Query 037612
Match_columns 663
No_of_seqs 318 out of 1056
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 02:42:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037612.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037612hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0166 Karyopherin (importin) 100.0 9.8E-41 2.1E-45 365.2 23.4 400 150-658 70-488 (514)
2 COG5064 SRP1 Karyopherin (impo 100.0 1.7E-40 3.7E-45 340.2 17.1 410 150-656 75-496 (526)
3 PLN03200 cellulose synthase-in 100.0 1.7E-36 3.7E-41 371.8 39.0 429 70-651 29-557 (2102)
4 PLN03200 cellulose synthase-in 100.0 2.9E-33 6.2E-38 343.6 38.2 436 149-655 407-859 (2102)
5 KOG4224 Armadillo repeat prote 99.9 3.3E-26 7.2E-31 237.1 20.7 337 152-637 91-435 (550)
6 KOG4224 Armadillo repeat prote 99.9 5.4E-26 1.2E-30 235.5 20.2 318 152-619 132-457 (550)
7 KOG0166 Karyopherin (importin) 99.9 1.3E-24 2.7E-29 238.8 26.6 333 191-626 68-413 (514)
8 COG5064 SRP1 Karyopherin (impo 99.9 4.8E-23 1E-27 212.2 18.7 335 190-626 72-420 (526)
9 PF05804 KAP: Kinesin-associat 99.8 1.6E-16 3.6E-21 183.2 36.5 344 151-655 295-651 (708)
10 PF05804 KAP: Kinesin-associat 99.7 8E-16 1.7E-20 177.6 30.8 308 166-627 268-583 (708)
11 KOG1048 Neural adherens juncti 99.6 1.5E-13 3.3E-18 156.1 22.8 378 146-603 233-679 (717)
12 KOG1048 Neural adherens juncti 99.5 2.9E-12 6.3E-17 145.7 20.2 296 190-627 234-613 (717)
13 PRK09687 putative lyase; Provi 99.4 9.2E-12 2E-16 131.0 21.7 249 150-603 27-277 (280)
14 PRK09687 putative lyase; Provi 99.4 3.1E-11 6.7E-16 127.0 20.7 235 190-626 24-258 (280)
15 PF04826 Arm_2: Armadillo-like 99.3 1.5E-10 3.4E-15 119.8 21.9 190 148-475 14-206 (254)
16 KOG4199 Uncharacterized conser 99.3 1.6E-09 3.5E-14 113.0 28.8 317 143-651 107-442 (461)
17 cd00020 ARM Armadillo/beta-cat 99.3 7.6E-11 1.7E-15 105.8 13.4 110 149-259 10-120 (120)
18 PF10508 Proteasom_PSMB: Prote 99.2 1.2E-08 2.6E-13 115.9 32.2 335 147-624 78-437 (503)
19 cd00020 ARM Armadillo/beta-cat 99.2 1.3E-10 2.9E-15 104.2 11.5 101 184-284 2-103 (120)
20 PF04826 Arm_2: Armadillo-like 99.2 1E-09 2.2E-14 113.7 19.0 216 185-545 8-231 (254)
21 PRK13800 putative oxidoreducta 99.1 7.7E-09 1.7E-13 125.1 24.8 59 190-258 622-680 (897)
22 KOG4500 Rho/Rac GTPase guanine 99.1 1.5E-08 3.3E-13 108.6 23.8 356 152-607 93-518 (604)
23 KOG4199 Uncharacterized conser 99.1 1.8E-07 3.8E-12 98.0 30.3 363 64-615 67-451 (461)
24 PF10508 Proteasom_PSMB: Prote 99.0 2.5E-07 5.5E-12 105.2 31.8 309 151-610 43-368 (503)
25 PRK13800 putative oxidoreducta 99.0 2.8E-08 6E-13 120.3 25.0 273 148-604 623-895 (897)
26 KOG4500 Rho/Rac GTPase guanine 98.9 4.1E-08 8.8E-13 105.4 17.4 334 161-625 56-407 (604)
27 KOG2122 Beta-catenin-binding p 98.9 1.5E-07 3.2E-12 112.1 22.3 337 159-626 206-578 (2195)
28 KOG2122 Beta-catenin-binding p 98.8 6.8E-08 1.5E-12 114.9 17.5 272 162-611 312-604 (2195)
29 PF01602 Adaptin_N: Adaptin N 98.6 1.7E-06 3.7E-11 98.1 18.7 336 142-612 110-448 (526)
30 PF01602 Adaptin_N: Adaptin N 98.5 2.2E-05 4.8E-10 89.1 26.0 117 150-284 8-126 (526)
31 KOG4646 Uncharacterized conser 98.5 6.3E-07 1.4E-11 83.1 8.9 133 144-281 14-146 (173)
32 PF00514 Arm: Armadillo/beta-c 98.4 2.1E-07 4.6E-12 69.1 4.3 41 178-218 1-41 (41)
33 KOG2160 Armadillo/beta-catenin 98.4 1.6E-05 3.5E-10 84.8 19.4 126 159-285 95-222 (342)
34 KOG0168 Putative ubiquitin fus 98.4 6.5E-05 1.4E-09 86.8 24.4 132 149-283 170-305 (1051)
35 KOG1222 Kinesin associated pro 98.3 0.00012 2.6E-09 80.2 23.5 133 148-285 306-438 (791)
36 PF00514 Arm: Armadillo/beta-c 98.3 6.5E-07 1.4E-11 66.5 3.8 41 219-259 1-41 (41)
37 cd00256 VATPase_H VATPase_H, r 98.3 0.00023 5.1E-09 78.9 24.9 131 152-284 107-240 (429)
38 KOG2171 Karyopherin (importin) 98.2 0.00031 6.7E-09 84.0 26.2 367 147-611 119-507 (1075)
39 KOG2160 Armadillo/beta-catenin 98.2 0.00012 2.5E-09 78.3 19.7 144 201-474 95-240 (342)
40 cd00256 VATPase_H VATPase_H, r 98.2 0.0016 3.4E-08 72.5 28.2 321 147-606 54-423 (429)
41 KOG3678 SARM protein (with ste 98.1 0.00015 3.2E-09 79.2 18.8 275 181-610 172-454 (832)
42 PTZ00429 beta-adaptin; Provisi 98.0 0.0096 2.1E-07 70.8 32.6 307 144-561 103-432 (746)
43 TIGR02270 conserved hypothetic 97.9 0.0022 4.7E-08 71.3 24.1 142 419-616 163-304 (410)
44 KOG1293 Proteins containing ar 97.9 0.0032 7E-08 71.7 24.9 110 151-261 14-127 (678)
45 PF03224 V-ATPase_H_N: V-ATPas 97.9 0.00028 6.1E-09 75.6 15.7 192 159-476 69-271 (312)
46 smart00185 ARM Armadillo/beta- 97.8 3.8E-05 8.2E-10 56.1 4.9 40 179-218 2-41 (41)
47 PTZ00429 beta-adaptin; Provisi 97.8 0.016 3.5E-07 68.9 28.6 295 148-611 34-329 (746)
48 KOG1241 Karyopherin (importin) 97.7 0.0069 1.5E-07 70.0 24.0 118 141-260 358-478 (859)
49 PF03224 V-ATPase_H_N: V-ATPas 97.7 0.00012 2.6E-09 78.4 9.6 140 142-284 146-294 (312)
50 KOG0168 Putative ubiquitin fus 97.7 0.0018 3.9E-08 75.3 18.8 255 191-626 169-432 (1051)
51 KOG1222 Kinesin associated pro 97.6 0.0089 1.9E-07 65.9 21.7 117 167-285 283-399 (791)
52 KOG0946 ER-Golgi vesicle-tethe 97.6 0.037 8.1E-07 64.4 27.4 131 147-282 23-176 (970)
53 PF13646 HEAT_2: HEAT repeats; 97.6 0.00027 5.8E-09 60.4 8.1 86 447-558 1-88 (88)
54 TIGR02270 conserved hypothetic 97.6 0.0048 1.1E-07 68.6 20.0 128 500-651 151-294 (410)
55 smart00185 ARM Armadillo/beta- 97.6 0.00011 2.3E-09 53.7 4.8 39 220-258 2-40 (41)
56 PF13646 HEAT_2: HEAT repeats; 97.5 0.00031 6.7E-09 60.0 7.3 85 498-603 1-87 (88)
57 KOG2171 Karyopherin (importin) 97.5 0.016 3.4E-07 69.9 22.8 110 151-262 353-464 (1075)
58 COG1413 FOG: HEAT repeat [Ener 97.4 0.037 8.1E-07 59.4 23.1 226 148-560 45-271 (335)
59 KOG1062 Vesicle coat complex A 97.2 0.11 2.3E-06 60.9 25.3 303 134-564 130-453 (866)
60 PF13513 HEAT_EZ: HEAT-like re 97.1 0.00059 1.3E-08 53.6 4.1 55 203-257 1-55 (55)
61 COG1413 FOG: HEAT repeat [Ener 97.1 0.041 8.9E-07 59.1 19.6 99 460-597 164-262 (335)
62 KOG2759 Vacuolar H+-ATPase V1 97.0 0.18 3.9E-06 55.3 22.7 131 152-285 120-254 (442)
63 KOG1062 Vesicle coat complex A 96.9 0.4 8.7E-06 56.3 25.6 267 144-561 105-378 (866)
64 KOG0946 ER-Golgi vesicle-tethe 96.8 0.15 3.3E-06 59.6 21.7 131 152-283 67-219 (970)
65 KOG2759 Vacuolar H+-ATPase V1 96.8 0.043 9.4E-07 60.0 16.4 267 143-472 153-436 (442)
66 KOG1293 Proteins containing ar 96.7 0.017 3.6E-07 66.1 12.6 127 139-270 416-544 (678)
67 PF13513 HEAT_EZ: HEAT-like re 96.6 0.003 6.6E-08 49.5 4.6 54 162-216 2-55 (55)
68 KOG3678 SARM protein (with ste 96.6 0.026 5.6E-07 62.2 12.4 176 436-626 171-354 (832)
69 PF05536 Neurochondrin: Neuroc 96.5 0.028 6E-07 64.9 12.9 134 148-285 7-153 (543)
70 KOG1517 Guanine nucleotide bin 96.3 0.091 2E-06 62.9 16.1 145 418-576 572-742 (1387)
71 PF09759 Atx10homo_assoc: Spin 96.2 0.018 3.9E-07 51.6 7.5 67 206-272 3-72 (102)
72 KOG2023 Nuclear transport rece 96.2 0.73 1.6E-05 53.3 21.5 171 100-280 129-307 (885)
73 COG5096 Vesicle coat complex, 96.1 0.14 3E-06 60.6 16.3 152 425-606 42-193 (757)
74 PF09759 Atx10homo_assoc: Spin 96.1 0.018 3.9E-07 51.7 7.0 65 164-228 3-70 (102)
75 KOG2973 Uncharacterized conser 96.0 0.49 1.1E-05 50.2 17.8 114 149-268 6-120 (353)
76 KOG1061 Vesicle coat complex A 95.8 0.51 1.1E-05 55.3 18.8 95 160-263 99-193 (734)
77 PF05536 Neurochondrin: Neuroc 95.7 0.13 2.8E-06 59.5 13.3 153 447-611 7-171 (543)
78 KOG4646 Uncharacterized conser 95.6 0.017 3.6E-07 54.3 4.8 95 189-284 16-111 (173)
79 KOG1789 Endocytosis protein RM 95.5 2.7 5.9E-05 51.0 22.8 113 146-260 1771-1884(2235)
80 KOG1242 Protein containing ada 95.3 1.6 3.5E-05 50.2 20.1 136 423-560 274-442 (569)
81 PF12348 CLASP_N: CLASP N term 95.1 0.42 9.2E-06 48.3 13.5 181 419-614 23-212 (228)
82 KOG1059 Vesicle coat complex A 95.0 0.48 1E-05 55.1 14.6 224 191-576 146-373 (877)
83 KOG4413 26S proteasome regulat 94.5 6.3 0.00014 42.5 20.3 126 155-282 91-223 (524)
84 KOG0213 Splicing factor 3b, su 94.4 8.2 0.00018 45.6 22.4 111 147-263 800-916 (1172)
85 KOG1077 Vesicle coat complex A 94.4 12 0.00026 44.0 23.7 91 497-598 330-423 (938)
86 PF12348 CLASP_N: CLASP N term 94.3 0.84 1.8E-05 46.1 13.6 105 156-261 17-125 (228)
87 KOG4535 HEAT and armadillo rep 94.1 0.17 3.7E-06 56.3 8.3 228 419-655 407-655 (728)
88 COG5215 KAP95 Karyopherin (imp 94.0 6.4 0.00014 45.2 20.2 118 142-263 361-483 (858)
89 KOG0567 HEAT repeat-containing 93.8 4.2 9.1E-05 42.6 17.2 55 534-603 219-275 (289)
90 KOG0213 Splicing factor 3b, su 93.4 6.1 0.00013 46.6 19.1 182 444-653 882-1065(1172)
91 COG5181 HSH155 U2 snRNP splice 93.3 3.7 8E-05 47.4 17.0 115 144-263 602-721 (975)
92 KOG2259 Uncharacterized conser 93.3 6 0.00013 46.1 18.7 54 510-563 387-440 (823)
93 KOG2259 Uncharacterized conser 92.5 1.1 2.3E-05 51.9 11.5 112 144-263 195-314 (823)
94 PF02985 HEAT: HEAT repeat; I 92.3 0.16 3.5E-06 35.2 3.1 28 534-561 1-28 (31)
95 KOG1061 Vesicle coat complex A 92.3 0.61 1.3E-05 54.7 9.5 146 444-612 48-193 (734)
96 KOG1242 Protein containing ada 92.0 24 0.00053 40.8 21.6 115 160-284 229-345 (569)
97 PF10165 Ric8: Guanine nucleot 91.8 1.5 3.2E-05 49.6 11.9 145 134-282 14-190 (446)
98 PF12717 Cnd1: non-SMC mitotic 91.5 0.66 1.4E-05 45.6 7.7 91 510-609 2-93 (178)
99 PF02985 HEAT: HEAT repeat; I 91.5 0.27 6E-06 34.0 3.5 28 232-259 2-29 (31)
100 KOG1824 TATA-binding protein-i 91.3 7.2 0.00016 47.2 16.6 93 512-612 948-1040(1233)
101 COG5181 HSH155 U2 snRNP splice 91.2 7.5 0.00016 45.0 16.1 140 449-612 734-874 (975)
102 KOG1060 Vesicle coat complex A 90.8 1.6 3.4E-05 51.5 10.7 151 419-589 303-476 (968)
103 PF12755 Vac14_Fab1_bd: Vacuol 90.2 1.1 2.4E-05 39.9 7.1 66 189-257 27-94 (97)
104 KOG1517 Guanine nucleotide bin 90.1 8.1 0.00018 47.2 15.8 187 85-284 462-654 (1387)
105 PF10165 Ric8: Guanine nucleot 89.9 1.3 2.8E-05 50.1 9.1 113 169-282 3-132 (446)
106 PF06025 DUF913: Domain of Unk 89.7 16 0.00035 40.5 17.2 62 221-282 96-161 (379)
107 PF11841 DUF3361: Domain of un 89.5 3.3 7.3E-05 40.2 10.2 111 183-294 5-123 (160)
108 PF14668 RICTOR_V: Rapamycin-i 89.1 1.9 4E-05 36.5 7.2 66 206-272 4-70 (73)
109 PF12717 Cnd1: non-SMC mitotic 87.2 3.3 7.1E-05 40.6 8.9 92 160-260 1-93 (178)
110 PF11698 V-ATPase_H_C: V-ATPas 87.2 1.7 3.6E-05 40.2 6.3 72 146-217 43-114 (119)
111 PF11701 UNC45-central: Myosin 86.9 5.5 0.00012 38.4 10.0 131 456-605 16-156 (157)
112 PF08045 CDC14: Cell division 86.6 4.9 0.00011 42.1 10.1 84 203-286 105-190 (257)
113 KOG0567 HEAT repeat-containing 86.6 46 0.001 35.1 19.5 61 188-258 66-128 (289)
114 KOG1059 Vesicle coat complex A 85.9 85 0.0018 37.5 30.2 135 133-283 131-267 (877)
115 PF12755 Vac14_Fab1_bd: Vacuol 85.6 4.2 9E-05 36.2 7.8 59 495-553 26-88 (97)
116 PF14664 RICTOR_N: Rapamycin-i 85.5 5.8 0.00013 43.8 10.6 116 159-279 80-195 (371)
117 COG5369 Uncharacterized conser 85.1 2 4.3E-05 48.8 6.7 111 497-611 432-548 (743)
118 PF06371 Drf_GBD: Diaphanous G 85.1 6.7 0.00015 38.2 9.9 105 151-258 71-186 (187)
119 PF11698 V-ATPase_H_C: V-ATPas 85.1 1.9 4E-05 39.9 5.4 72 532-607 42-114 (119)
120 COG5240 SEC21 Vesicle coat com 85.0 84 0.0018 36.6 23.5 131 453-606 421-553 (898)
121 COG5369 Uncharacterized conser 84.8 2.1 4.5E-05 48.6 6.6 95 166-260 450-546 (743)
122 PF11701 UNC45-central: Myosin 84.5 2 4.3E-05 41.5 5.7 101 154-256 51-156 (157)
123 PF05659 RPW8: Arabidopsis bro 84.5 4 8.6E-05 39.2 7.6 73 14-87 17-89 (147)
124 KOG2023 Nuclear transport rece 84.2 16 0.00035 42.9 13.3 172 446-632 129-311 (885)
125 PF05004 IFRD: Interferon-rela 83.2 21 0.00045 38.5 13.4 132 420-560 103-255 (309)
126 PF12719 Cnd3: Nuclear condens 81.7 10 0.00022 40.3 10.4 108 146-259 26-143 (298)
127 PF05004 IFRD: Interferon-rela 81.1 84 0.0018 33.8 20.1 115 141-258 38-159 (309)
128 KOG1077 Vesicle coat complex A 80.2 1.4E+02 0.003 35.7 23.3 107 533-655 329-436 (938)
129 PF05918 API5: Apoptosis inhib 80.2 6.8 0.00015 45.4 8.7 77 508-593 34-110 (556)
130 COG5096 Vesicle coat complex, 79.5 14 0.00031 44.2 11.3 104 145-258 91-194 (757)
131 KOG1789 Endocytosis protein RM 78.5 18 0.0004 44.4 11.5 116 165-282 1743-1863(2235)
132 PF08045 CDC14: Cell division 77.7 19 0.0004 37.8 10.3 90 165-254 109-202 (257)
133 KOG2973 Uncharacterized conser 77.7 5.4 0.00012 42.6 6.4 89 192-284 6-94 (353)
134 COG5116 RPN2 26S proteasome re 77.4 8 0.00017 44.4 7.9 126 452-608 523-650 (926)
135 PF14664 RICTOR_N: Rapamycin-i 77.3 1.2E+02 0.0027 33.5 24.3 130 418-560 123-267 (371)
136 KOG2032 Uncharacterized conser 77.1 24 0.00052 40.0 11.5 138 412-561 269-414 (533)
137 PF12460 MMS19_C: RNAPII trans 76.1 22 0.00047 39.7 11.2 112 149-264 274-399 (415)
138 PF12460 MMS19_C: RNAPII trans 75.7 44 0.00095 37.3 13.5 115 489-610 264-396 (415)
139 PF05918 API5: Apoptosis inhib 75.3 12 0.00026 43.4 8.9 92 456-561 33-124 (556)
140 KOG4151 Myosin assembly protei 75.2 47 0.001 39.7 13.7 175 97-284 502-682 (748)
141 KOG1824 TATA-binding protein-i 75.2 93 0.002 38.3 16.0 105 444-561 173-285 (1233)
142 COG5240 SEC21 Vesicle coat com 74.7 1.2E+02 0.0026 35.5 16.1 141 419-562 280-442 (898)
143 KOG2999 Regulator of Rac1, req 73.7 31 0.00068 39.7 11.3 137 147-285 84-226 (713)
144 PF04063 DUF383: Domain of unk 73.6 22 0.00047 35.7 9.3 92 190-282 53-157 (192)
145 KOG2734 Uncharacterized conser 72.7 1.7E+02 0.0038 33.1 17.1 113 168-281 105-233 (536)
146 KOG2062 26S proteasome regulat 72.0 13 0.00028 44.0 8.0 96 497-607 555-652 (929)
147 PF12031 DUF3518: Domain of un 71.8 9.2 0.0002 39.6 6.2 133 144-284 71-228 (257)
148 KOG1060 Vesicle coat complex A 70.8 34 0.00074 41.0 11.1 138 449-612 291-462 (968)
149 KOG1240 Protein kinase contain 70.6 54 0.0012 41.1 13.0 51 419-472 439-489 (1431)
150 COG5215 KAP95 Karyopherin (imp 67.9 1.6E+02 0.0034 34.5 15.1 204 418-630 236-457 (858)
151 KOG3036 Protein involved in ce 67.7 57 0.0012 34.1 10.8 108 162-270 140-257 (293)
152 PF06025 DUF913: Domain of Unk 66.9 94 0.002 34.5 13.3 110 161-270 123-243 (379)
153 KOG1241 Karyopherin (importin) 66.7 2.9E+02 0.0064 33.3 31.4 187 454-652 268-476 (859)
154 PF12719 Cnd3: Nuclear condens 65.9 39 0.00084 35.9 9.9 117 496-612 26-147 (298)
155 KOG2611 Neurochondrin/leucine- 65.3 69 0.0015 36.5 11.5 126 152-281 17-161 (698)
156 PF12031 DUF3518: Domain of un 64.8 13 0.00029 38.5 5.7 83 160-243 137-229 (257)
157 KOG2999 Regulator of Rac1, req 64.1 82 0.0018 36.5 12.0 54 191-244 85-138 (713)
158 PF11841 DUF3361: Domain of un 63.3 96 0.0021 30.3 11.0 105 152-258 17-130 (160)
159 KOG4535 HEAT and armadillo rep 62.0 24 0.00052 40.0 7.4 100 416-524 497-602 (728)
160 KOG3665 ZYG-1-like serine/thre 59.6 1.2E+02 0.0027 36.5 13.3 164 426-603 494-692 (699)
161 PF08167 RIX1: rRNA processing 59.6 83 0.0018 30.5 10.1 112 143-259 22-143 (165)
162 COG5116 RPN2 26S proteasome re 57.6 33 0.00072 39.7 7.6 96 503-614 523-621 (926)
163 PF03130 HEAT_PBS: PBS lyase H 56.7 8 0.00017 25.9 1.7 26 549-589 1-26 (27)
164 PF14668 RICTOR_V: Rapamycin-i 56.5 40 0.00088 28.5 6.2 66 164-230 4-70 (73)
165 KOG0414 Chromosome condensatio 54.8 88 0.0019 39.2 10.9 117 456-595 934-1051(1251)
166 KOG2734 Uncharacterized conser 54.8 1.2E+02 0.0026 34.3 11.1 132 150-282 129-278 (536)
167 KOG2062 26S proteasome regulat 54.6 76 0.0017 37.9 10.0 98 503-616 526-626 (929)
168 KOG0211 Protein phosphatase 2A 54.6 4.8E+02 0.01 31.8 23.7 422 142-653 232-664 (759)
169 KOG1943 Beta-tubulin folding c 54.3 5.5E+02 0.012 32.4 20.8 111 142-259 337-457 (1133)
170 smart00638 LPD_N Lipoprotein N 53.4 80 0.0017 36.7 10.4 103 495-612 392-513 (574)
171 PF01347 Vitellogenin_N: Lipop 53.3 3.3E+02 0.0072 31.8 15.6 158 422-603 413-584 (618)
172 smart00567 EZ_HEAT E-Z type HE 53.0 14 0.00031 24.9 2.6 28 548-590 2-29 (30)
173 KOG4151 Myosin assembly protei 52.8 83 0.0018 37.7 10.1 110 496-610 504-615 (748)
174 PF01347 Vitellogenin_N: Lipop 51.4 61 0.0013 37.9 9.1 103 446-563 396-520 (618)
175 KOG0212 Uncharacterized conser 48.1 65 0.0014 37.3 8.0 86 190-282 337-422 (675)
176 KOG1078 Vesicle coat complex C 47.5 92 0.002 37.5 9.3 138 419-561 261-420 (865)
177 cd03569 VHS_Hrs_Vps27p VHS dom 44.5 1.2E+02 0.0025 28.9 8.2 107 99-218 3-114 (142)
178 PF07923 N1221: N1221-like pro 43.7 41 0.00088 35.9 5.5 57 143-200 57-127 (293)
179 PF11865 DUF3385: Domain of un 42.8 1.7E+02 0.0037 28.3 9.2 68 191-258 88-156 (160)
180 COG5098 Chromosome condensatio 42.0 78 0.0017 37.7 7.5 134 409-565 906-1040(1128)
181 PF06685 DUF1186: Protein of u 41.4 1.6E+02 0.0035 30.8 9.3 82 530-619 70-154 (249)
182 PF07814 WAPL: Wings apart-lik 40.1 1.5E+02 0.0032 32.6 9.3 92 148-240 23-116 (361)
183 PF04063 DUF383: Domain of unk 39.2 89 0.0019 31.4 6.7 69 164-233 75-147 (192)
184 PF08216 CTNNBL: Catenin-beta- 39.1 36 0.00078 31.0 3.5 41 207-247 64-104 (108)
185 cd07670 BAR_SNX18 The Bin/Amph 39.0 2.3E+02 0.0051 28.7 9.5 87 1-110 24-110 (207)
186 PF07814 WAPL: Wings apart-lik 39.0 1.2E+02 0.0027 33.3 8.5 92 191-282 23-116 (361)
187 PF06371 Drf_GBD: Diaphanous G 38.7 1.7E+02 0.0036 28.2 8.6 71 532-607 106-186 (187)
188 PF10363 DUF2435: Protein of u 36.1 1.6E+02 0.0035 25.8 7.1 55 418-474 18-72 (92)
189 smart00638 LPD_N Lipoprotein N 34.8 3.6E+02 0.0078 31.3 11.9 90 496-603 442-540 (574)
190 PF14225 MOR2-PAG1_C: Cell mor 34.0 5.8E+02 0.013 26.8 13.5 134 447-606 113-252 (262)
191 KOG1240 Protein kinase contain 33.8 1.2E+03 0.025 30.2 17.5 106 151-259 427-537 (1431)
192 KOG0414 Chromosome condensatio 32.4 1.7E+02 0.0037 36.8 8.7 124 408-554 932-1056(1251)
193 KOG1058 Vesicle coat complex C 32.3 1.1E+02 0.0024 36.7 6.9 107 443-564 241-348 (948)
194 PF00790 VHS: VHS domain; Int 31.5 1.6E+02 0.0035 27.6 6.9 108 97-217 2-117 (140)
195 cd07626 BAR_SNX9_like The Bin/ 31.3 3.2E+02 0.007 27.6 9.3 85 1-110 16-102 (199)
196 KOG1058 Vesicle coat complex C 30.9 2.3E+02 0.005 34.2 9.1 37 528-564 238-274 (948)
197 PF11791 Aconitase_B_N: Aconit 29.4 32 0.0007 33.2 1.7 27 535-561 96-122 (154)
198 cd07668 BAR_SNX9 The Bin/Amphi 29.1 4.2E+02 0.0091 27.0 9.5 87 1-110 24-110 (210)
199 cd03568 VHS_STAM VHS domain fa 28.9 1.4E+02 0.003 28.4 6.0 47 580-626 38-86 (144)
200 PF14726 RTTN_N: Rotatin, an a 28.9 3.3E+02 0.0071 24.4 7.9 68 187-254 28-95 (98)
201 COG5231 VMA13 Vacuolar H+-ATPa 27.8 75 0.0016 34.5 4.2 74 143-217 353-427 (432)
202 PF13251 DUF4042: Domain of un 27.8 1.8E+02 0.004 28.9 6.8 79 486-564 87-176 (182)
203 PF04078 Rcd1: Cell differenti 27.6 5.8E+02 0.013 27.0 10.6 126 160-285 8-152 (262)
204 PF10363 DUF2435: Protein of u 26.8 2E+02 0.0043 25.3 6.1 80 194-282 8-87 (92)
205 PF04078 Rcd1: Cell differenti 26.2 3.1E+02 0.0068 28.9 8.3 119 162-286 111-239 (262)
206 cd03568 VHS_STAM VHS domain fa 26.1 1.7E+02 0.0036 27.9 6.0 70 190-259 38-110 (144)
207 cd03561 VHS VHS domain family; 25.8 2.2E+02 0.0048 26.4 6.7 70 190-259 38-112 (133)
208 cd03561 VHS VHS domain family; 25.5 3.1E+02 0.0067 25.4 7.6 69 149-218 40-112 (133)
209 KOG2611 Neurochondrin/leucine- 25.4 8.3E+02 0.018 28.3 11.8 147 449-606 15-180 (698)
210 KOG0211 Protein phosphatase 2A 25.0 3.5E+02 0.0077 32.9 9.6 161 419-596 253-415 (759)
211 KOG0212 Uncharacterized conser 24.4 1.2E+03 0.027 27.5 21.3 172 63-251 131-313 (675)
212 PF11791 Aconitase_B_N: Aconit 24.1 1.9E+02 0.0042 28.0 5.9 28 191-218 96-123 (154)
213 smart00288 VHS Domain present 23.9 1.9E+02 0.0041 27.0 5.8 71 580-656 38-111 (133)
214 PF08216 CTNNBL: Catenin-beta- 23.9 1.5E+02 0.0032 27.1 4.8 39 166-205 65-103 (108)
215 PF08569 Mo25: Mo25-like; Int 23.0 4.6E+02 0.01 28.7 9.4 113 147-260 165-284 (335)
216 cd07669 BAR_SNX33 The Bin/Amph 22.3 6.6E+02 0.014 25.6 9.4 87 1-110 24-110 (207)
217 PF13251 DUF4042: Domain of un 22.1 2.8E+02 0.0061 27.6 6.9 107 412-528 51-177 (182)
218 KOG2025 Chromosome condensatio 22.0 4.1E+02 0.0089 32.0 9.0 128 141-278 80-213 (892)
219 cd03569 VHS_Hrs_Vps27p VHS dom 21.9 2.3E+02 0.005 26.8 6.0 71 189-259 41-114 (142)
220 KOG1248 Uncharacterized conser 21.9 3.4E+02 0.0074 34.3 8.7 135 144-284 736-881 (1176)
221 cd03567 VHS_GGA VHS domain fam 21.6 2.6E+02 0.0055 26.6 6.2 70 190-259 39-116 (139)
222 PF08324 PUL: PUL domain; Int 21.6 1.6E+02 0.0035 30.5 5.4 109 159-268 122-240 (268)
223 PF06012 DUF908: Domain of Unk 21.3 3.7E+02 0.0081 29.1 8.3 66 204-269 237-307 (329)
224 KOG1820 Microtubule-associated 20.9 7.9E+02 0.017 30.3 11.5 126 418-560 310-441 (815)
225 KOG3036 Protein involved in ce 20.5 5.9E+02 0.013 26.9 8.8 96 165-261 97-199 (293)
No 1
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.8e-41 Score=365.17 Aligned_cols=400 Identities=19% Similarity=0.270 Sum_probs=312.4
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhhc-CChhhHHHHHhcCChHHHHHhhccC-ChHHHHHHHHHHHHhcC-CCcchHHH
Q 037612 150 EQVAILYTAGSLEHKSDAAASLVSLAR-DNDRYGKLIIEEGGVGPLLKLVKEG-KPEGQENAARAIGLLGR-DPESVEHM 226 (663)
Q Consensus 150 ~li~~L~~~G~~e~k~~AA~~L~~La~-~~~~~~~~Ive~G~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~-~~~~~~~i 226 (663)
..+..+.+ ++...+..|..+++.|.+ ........++..|.||.||.+|+.+ ++..|.+|||||.|+|. +.+....+
T Consensus 70 ~~~~~~~S-~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~v 148 (514)
T KOG0166|consen 70 LMLAALYS-DDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVV 148 (514)
T ss_pred HHHHHHhC-CCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccc
Confidence 34777788 888888888887777654 2223455666679999999999866 49999999999999995 78999999
Q ss_pred HHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHH
Q 037612 227 IHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVV 306 (663)
Q Consensus 227 v~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~ 306 (663)
+++|+||.|+++|.+++.+++++|+|||+|+|++++.+|+.+...|+++||+.++..... ..-++.+.|
T Consensus 149 v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~-----------~~~lRn~tW 217 (514)
T KOG0166|consen 149 VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDK-----------LSMLRNATW 217 (514)
T ss_pred ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccc-----------hHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999976531 013456677
Q ss_pred hhcccCc-cccCCCCCccccchhhhcccCCCCCCCCC-CCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCc
Q 037612 307 ASNKTNN-ANANGSNNKVIDDEDKQYHSLIPHPMGNK-TPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDN 384 (663)
Q Consensus 307 ~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~ 384 (663)
+.++.|+ ++|.++.- .+ ++.+ |.-.+ ..+.+.+|+.+|+|+.. |.++|.++
T Consensus 218 ~LsNlcrgk~P~P~~~-~v-------~~iL--p~L~~ll~~~D~~Vl~Da~WAls-----------------yLsdg~ne 270 (514)
T KOG0166|consen 218 TLSNLCRGKNPSPPFD-VV-------APIL--PALLRLLHSTDEEVLTDACWALS-----------------YLTDGSNE 270 (514)
T ss_pred HHHHHHcCCCCCCcHH-HH-------HHHH--HHHHHHHhcCCHHHHHHHHHHHH-----------------HHhcCChH
Confidence 7777665 23322211 01 0000 11111 34457789999999873 67777654
Q ss_pred cccccccccccccccccCCcCCC---CccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhh-cCChh
Q 037612 385 NVKQNHQSQHQHGLSNYGANTKG---RELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLE-KGPED 460 (663)
Q Consensus 385 ~~~~~~~~~~~~~~~~~g~~~~~---re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~-~~~~~ 460 (663)
.+ +.+...|..++. ....++ +.+.+|.++++|+++|++.++..+...|+++||..||. +....
T Consensus 271 ~i---------q~vi~~gvv~~LV~lL~~~~~----~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ 337 (514)
T KOG0166|consen 271 KI---------QMVIDAGVVPRLVDLLGHSSP----KVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKES 337 (514)
T ss_pred HH---------HHHHHccchHHHHHHHcCCCc----ccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchh
Confidence 33 334555665555 222222 35789999999999999999999999999999999999 55667
Q ss_pred HHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHH
Q 037612 461 VQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVK 540 (663)
Q Consensus 461 vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~ 540 (663)
++++|||+|+||++++. +|+..++. ++.+|+|++
T Consensus 338 ikkEAcW~iSNItAG~~---------------------~qiqaVid-------------------------a~l~p~Li~ 371 (514)
T KOG0166|consen 338 IKKEACWTISNITAGNQ---------------------EQIQAVID-------------------------ANLIPVLIN 371 (514)
T ss_pred HHHHHHHHHHHhhcCCH---------------------HHHHHHHH-------------------------cccHHHHHH
Confidence 99999999999998753 34444553 589999999
Q ss_pred hcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCC--------
Q 037612 541 LLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPD-------- 612 (663)
Q Consensus 541 LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~-------- 612 (663)
+|+.+++++++||+||++|++++++ +++.+++++.|.|+|||.||...|..+...++.+|.|+- .+++
T Consensus 372 ~l~~~ef~~rKEAawaIsN~ts~g~---~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil-~~~e~~~~~~~n 447 (514)
T KOG0166|consen 372 LLQTAEFDIRKEAAWAISNLTSSGT---PEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENIL-KVGEAEKNRGTN 447 (514)
T ss_pred HHhccchHHHHHHHHHHHhhcccCC---HHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHH-HHHHHhcccccc
Confidence 9999999999999999999999986 689999999999999999999998888667999998883 3322
Q ss_pred --hHHHHhccchhhhhhccccccccccCCcHHHHHHHHHHHHhhhhcC
Q 037612 613 --SEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLELYQSRG 658 (663)
Q Consensus 613 --~~~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~le~~~~~~ 658 (663)
...|+++|+ .+..+.+|.|.++++|.+|..+++.|++..
T Consensus 448 ~~~~~IEe~gg-------ldkiE~LQ~hen~~Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 448 PLAIMIEEAGG-------LDKIENLQSHENEEIYKKAYKIIDTYFSEE 488 (514)
T ss_pred HHHHHHHHccC-------hhHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence 223444444 444567899999999999999999999843
No 2
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.7e-40 Score=340.25 Aligned_cols=410 Identities=20% Similarity=0.274 Sum_probs=310.5
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHh-hcCChhhHHHHHhcCChHHHHHhhccC-ChHHHHHHHHHHHHhcC-CCcchHHH
Q 037612 150 EQVAILYTAGSLEHKSDAAASLVSL-ARDNDRYGKLIIEEGGVGPLLKLVKEG-KPEGQENAARAIGLLGR-DPESVEHM 226 (663)
Q Consensus 150 ~li~~L~~~G~~e~k~~AA~~L~~L-a~~~~~~~~~Ive~G~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~-~~~~~~~i 226 (663)
++..-|.+ .+.|.+..|......+ ++++....+.++++|+||.+|++|++. ..-.|.+|+|||.|++. .......+
T Consensus 75 ~lt~~l~S-dDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvV 153 (526)
T COG5064 75 QLTQQLFS-DDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVV 153 (526)
T ss_pred HHHHHHhh-hHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEE
Confidence 34667788 8999999998888775 444445688889999999999999654 57799999999999996 56677788
Q ss_pred HHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHH
Q 037612 227 IHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVV 306 (663)
Q Consensus 227 v~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~ 306 (663)
|++|+||.|+++|.++..+|++++.|||+|+|++++.+|+.+.+.|++.||+.||.+... | ..-++...|
T Consensus 154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~--~--------ismlRn~TW 223 (526)
T COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAI--H--------ISMLRNATW 223 (526)
T ss_pred EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccc--h--------HHHHHHhHH
Confidence 899999999999999999999999999999999999999999999999999999975421 1 112344455
Q ss_pred hhcccCc-cccCCCCCccccchhhhcccCCCCCCCCC-CCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCc
Q 037612 307 ASNKTNN-ANANGSNNKVIDDEDKQYHSLIPHPMGNK-TPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDN 384 (663)
Q Consensus 307 ~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~ 384 (663)
+.++.|+ +||.++-. .+. ..+ |+... .-....+++.+++|+.+ |.++|..+
T Consensus 224 tLSNlcRGknP~P~w~-~is-------qal--piL~KLiys~D~evlvDA~WAiS-----------------YlsDg~~E 276 (526)
T COG5064 224 TLSNLCRGKNPPPDWS-NIS-------QAL--PILAKLIYSRDPEVLVDACWAIS-----------------YLSDGPNE 276 (526)
T ss_pred HHHHhhCCCCCCCchH-HHH-------HHH--HHHHHHHhhcCHHHHHHHHHHHH-----------------HhccCcHH
Confidence 5555554 22221111 000 000 11000 11235588999999874 67777643
Q ss_pred cccccccccccccccccCCcCCCCcc-CChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHH
Q 037612 385 NVKQNHQSQHQHGLSNYGANTKGREL-EDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQY 463 (663)
Q Consensus 385 ~~~~~~~~~~~~~~~~~g~~~~~re~-~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~ 463 (663)
.+. .+-..|+..|.-|. ..|. .+.+.+|.++++|+.+|++.++..|...|++..|..||++....+++
T Consensus 277 ~i~---------avld~g~~~RLvElLs~~s--a~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irK 345 (526)
T COG5064 277 KIQ---------AVLDVGIPGRLVELLSHES--AKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRK 345 (526)
T ss_pred HHH---------HHHhcCCcHHHHHHhcCcc--ccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhh
Confidence 222 23334554444221 1222 35699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcc
Q 037612 464 NSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLD 543 (663)
Q Consensus 464 ~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~ 543 (663)
++||+|+||+++.. +|+..+|+ .+.|||||++|+
T Consensus 346 EaCWTiSNITAGnt---------------------eqiqavid-------------------------~nliPpLi~lls 379 (526)
T COG5064 346 EACWTISNITAGNT---------------------EQIQAVID-------------------------ANLIPPLIHLLS 379 (526)
T ss_pred hhheeecccccCCH---------------------HHHHHHHh-------------------------cccchHHHHHHH
Confidence 99999999998753 34444443 579999999999
Q ss_pred cCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCChHHHHhccchh
Q 037612 544 EREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLT 623 (663)
Q Consensus 544 ~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~~~~i~~~~vl~ 623 (663)
..+..+++||+||++|..++++. .++..+++++.|.|+|||.||...+-++-..++.++.|+ +++++..+...-.-+.
T Consensus 380 ~ae~k~kKEACWAisNatsgg~~-~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eni-Lk~Ge~d~~~~~~nin 457 (526)
T COG5064 380 SAEYKIKKEACWAISNATSGGLN-RPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENI-LKVGEQDRLRYGKNIN 457 (526)
T ss_pred HHHHHHHHHHHHHHHhhhccccC-CchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHH-HhhhhHHHHhccCCcc
Confidence 99999999999999999988875 679999999999999999999988776655589999888 6666543322211111
Q ss_pred ---hhhh---ccccccccccCCcHHHHHHHHHHHHhhhh
Q 037612 624 ---VLEW---TSKQSHMTQDETVDPLLQDAKSRLELYQS 656 (663)
Q Consensus 624 ---~L~~---~~~~~~~~q~~~~~~l~~~a~~~le~~~~ 656 (663)
+... +.+.++-.|+..++.+|.||.+++|.|+.
T Consensus 458 ~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFg 496 (526)
T COG5064 458 IYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFG 496 (526)
T ss_pred HHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcc
Confidence 1100 44455677888999999999999999995
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.7e-36 Score=371.80 Aligned_cols=429 Identities=20% Similarity=0.200 Sum_probs=336.5
Q ss_pred HHHHHHHHHHHHHhhhcCcccccceecccccHHHHHHHHHhh-----hcchHHHHhhccccCCCCc--cccCCCCcccch
Q 037612 70 EQVLEKALSLVIKYRANGIIKRVFTIIPAAAFRKMSSQLENS-----IGDVSWLLRVSASAEDRDD--EYLGLPPIAANE 142 (663)
Q Consensus 70 ~~tl~~a~~l~~~C~~~~~~~r~~~i~~~~~l~~l~~~L~~~-----~~~~~~ll~~s~~~~~~~~--~~~~~p~ia~~~ 142 (663)
.+..+++...++.-.+.+...|.+..-..|.+|.|++.|.+. ...+..++++|...+++.. ..+.+||+
T Consensus 29 ~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~Iv~~GaIppL---- 104 (2102)
T PLN03200 29 PQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPL---- 104 (2102)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHH----
Confidence 355566666777777777776766543588999999999532 1236678888877655432 24456666
Q ss_pred hhHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCC--hhhH-HHHHhcCChHHHHHhhccCC---hHHHHHHHHHHHHh
Q 037612 143 PILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDN--DRYG-KLIIEEGGVGPLLKLVKEGK---PEGQENAARAIGLL 216 (663)
Q Consensus 143 ~i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~--~~~~-~~Ive~G~Ip~Lv~LL~sg~---~~~q~~Aa~AL~nL 216 (663)
+.+|+. |+.+.|++||++|++|+.++ |.++ .++++.|+||+|+.+|++|+ ..+++.|+.+|+||
T Consensus 105 ---------V~LL~s-Gs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nL 174 (2102)
T PLN03200 105 ---------LSLLKS-GSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNL 174 (2102)
T ss_pred ---------HHHHHC-CCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHH
Confidence 889999 99999999999999999875 6666 45568999999999999984 34678889999999
Q ss_pred cCCCcchH-HHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHh
Q 037612 217 GRDPESVE-HMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIV 295 (663)
Q Consensus 217 s~~~~~~~-~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~ 295 (663)
+.+++++. .++++|+||.|+++|+++++..|..|+++|.+++.++++.+..+.+.|+||+||++|++++
T Consensus 175 s~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~---------- 244 (2102)
T PLN03200 175 CGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGN---------- 244 (2102)
T ss_pred hcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCC----------
Confidence 99888875 5689999999999999999999999999999999877889999999999999999997652
Q ss_pred hhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCc
Q 037612 296 SKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGT 375 (663)
Q Consensus 296 ~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~ 375 (663)
T Consensus 245 -------------------------------------------------------------------------------- 244 (2102)
T PLN03200 245 -------------------------------------------------------------------------------- 244 (2102)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhh
Q 037612 376 DVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLE 455 (663)
Q Consensus 376 ~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~ 455 (663)
+ ..+|+.|++||++|+.++.++.+.|.+.||+++|+.++.
T Consensus 245 ------------------------------------~----~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~ 284 (2102)
T PLN03200 245 ------------------------------------E----VSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATV 284 (2102)
T ss_pred ------------------------------------C----hHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHh
Confidence 0 024888999999999999999999999999999999998
Q ss_pred cCCh---------hHHHHHHHHHHHHhhhhhc-----------c--H---------------------HHHhhhcCC---
Q 037612 456 KGPE---------DVQYNSAMALMEITAVAEK-----------D--A---------------------ELRRSAFKP--- 489 (663)
Q Consensus 456 ~~~~---------~vq~~aa~AL~~i~a~a~~-----------~--~---------------------~~rr~a~~~--- 489 (663)
.... .+|++|+|||.|||.+-.. . . +..+ +|.+
T Consensus 285 sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~-~i~~~~v 363 (2102)
T PLN03200 285 APSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTR-AFDPTVI 363 (2102)
T ss_pred CcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhh-hcccccc
Confidence 6553 4599999999999874211 0 0 0000 1111
Q ss_pred ----------CCchh-H-----------------------hHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhh-----H
Q 037612 490 ----------NAPAC-K-----------------------AVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKA-----T 530 (663)
Q Consensus 490 ----------~~~a~-~-----------------------~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~-----~ 530 (663)
..|.. + .+++.|+.|+...+.+++..++.+|++|+..-.. .
T Consensus 364 ~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi 443 (2102)
T PLN03200 364 EQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALG 443 (2102)
T ss_pred HHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 10110 1 1345677888888899999999999999965222 2
Q ss_pred hhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 037612 531 ETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHV 610 (663)
Q Consensus 531 e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~ 610 (663)
+.++||+||++|.+.+..+++.|+|+|++++.+. .++...|+++|||++|++||+++++.+|..|+++|+|++.+.
T Consensus 444 ~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~n----denr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~ 519 (2102)
T PLN03200 444 GREGVQLLISLLGLSSEQQQEYAVALLAILTDEV----DESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHS 519 (2102)
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC----HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCc
Confidence 4678999999999999999999999999998543 467779999999999999999999999999999999999887
Q ss_pred CChHH-HHhccchhhhhhccccccccccCCcHHHHHHHHHHH
Q 037612 611 PDSED-LAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRL 651 (663)
Q Consensus 611 ~~~~~-i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~l 651 (663)
++... +.++|+++.|.+-.+.. ++..+.-+..++..|
T Consensus 520 ~qir~iV~~aGAIppLV~LL~sg----d~~~q~~Aa~AL~nL 557 (2102)
T PLN03200 520 EDIRACVESAGAVPALLWLLKNG----GPKGQEIAAKTLTKL 557 (2102)
T ss_pred HHHHHHHHHCCCHHHHHHHHhCC----CHHHHHHHHHHHHHH
Confidence 66555 55889999987543322 234445556665555
No 4
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=2.9e-33 Score=343.58 Aligned_cols=436 Identities=17% Similarity=0.151 Sum_probs=312.1
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC-CCcchHHHH
Q 037612 149 WEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR-DPESVEHMI 227 (663)
Q Consensus 149 ~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~-~~~~~~~iv 227 (663)
+.+|.+|+. ++.+.|.+++++|.+|+.+++++++.|++.|+||+|+++|++++...|+.|+++|.||+. +++++..|+
T Consensus 407 k~LV~LL~~-~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIi 485 (2102)
T PLN03200 407 KVLVGLITM-ATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAIT 485 (2102)
T ss_pred hhhhhhhcc-CCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 346888999 999999999999999998889999999999999999999999999999999999999995 667899999
Q ss_pred HcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHh
Q 037612 228 HSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVA 307 (663)
Q Consensus 228 ~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~ 307 (663)
++|+||+|+++|++++.++|++|+|+|+||+.+++++|..+.++|+||+|+++|++|+.+.. +.+.+ .|..+...
T Consensus 486 eaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q-~~Aa~----AL~nLi~~ 560 (2102)
T PLN03200 486 AAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQ-EIAAK----TLTKLVRT 560 (2102)
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHH-HHHHH----HHHHHHhc
Confidence 99999999999999999999999999999999888899999999999999999999864221 11111 22222110
Q ss_pred hcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcccc
Q 037612 308 SNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVK 387 (663)
Q Consensus 308 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~ 387 (663)
. +...+ .+ +..-+....++-...++..-..+.. +........++.. ..+|.
T Consensus 561 ~-----------d~~~I-------~~-Lv~LLlsdd~~~~~~aL~vLgnIls----l~~~~d~~~~g~~-~~ggL----- 611 (2102)
T PLN03200 561 A-----------DAATI-------SQ-LTALLLGDLPESKVHVLDVLGHVLS----VASLEDLVREGSA-ANDAL----- 611 (2102)
T ss_pred c-----------chhHH-------HH-HHHHhcCCChhHHHHHHHHHHHHHh----hcchhHHHHHhhh-ccccH-----
Confidence 0 00000 00 0000000000000111110000000 0000000000000 01121
Q ss_pred ccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHH
Q 037612 388 QNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAM 467 (663)
Q Consensus 388 ~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~ 467 (663)
+.. ....+.+++ ..|..|+++|++++.++.++|..+...|++++|+.||++++.++++++||
T Consensus 612 -----~~L---------v~LL~sgs~----~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~ 673 (2102)
T PLN03200 612 -----RTL---------IQLLSSSKE----ETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSAR 673 (2102)
T ss_pred -----HHH---------HHHHcCCCH----HHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHH
Confidence 000 011222333 46999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhH----hhccHHHHHHhcc
Q 037612 468 ALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKAT----ETRMIVPLVKLLD 543 (663)
Q Consensus 468 AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~----e~~~I~pLV~LL~ 543 (663)
||.+++.... .+.+.. + ...++|++|++++++.++++...|..+|++++...... +.++|+|||++|+
T Consensus 674 AL~nL~~~~~--~~q~~~-~-----v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr 745 (2102)
T PLN03200 674 ALAALSRSIK--ENRKVS-Y-----AAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLR 745 (2102)
T ss_pred HHHHHHhCCC--HHHHHH-H-----HHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHH
Confidence 9999986432 232221 1 12568999999999999999999999999999977553 3578999999999
Q ss_pred cCCHHHHHHHHHHHHhcccCCCCCChhh-H-HHHHHcCCHHHHHHHHhcCChhH--HHHHHHHHHHHhcCCCC-------
Q 037612 544 EREAEVSREASIALTKFACSDNYLHSDH-S-KAIISAGGAKHLVQLVYFGEQIV--QLSALVLLCYIALHVPD------- 612 (663)
Q Consensus 544 ~~~~~v~~eAa~AL~~la~~~~~~~~~~-~-~~Iv~~ggi~~Lv~LL~~~~~~~--q~~Al~~L~~la~~~~~------- 612 (663)
+++++++++|+|||.+++.... .++ . ..+...|.+.||+.+|...+... -..|+..|.+++.....
T Consensus 746 ~G~~~~k~~Aa~AL~~L~~~~~---~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~ 822 (2102)
T PLN03200 746 EGTLEGKRNAARALAQLLKHFP---VDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPP 822 (2102)
T ss_pred hCChHHHHHHHHHHHHHHhCCC---hhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCc
Confidence 9999999999999999986652 333 2 57899999999999999875544 23599999999853211
Q ss_pred -hHHHHhccchhhhhhccccccccccCCcHHHHHHHHHHHHhhh
Q 037612 613 -SEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLELYQ 655 (663)
Q Consensus 613 -~~~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~le~~~ 655 (663)
..-++..+.+..|.. -+ .+....++.||+.+|+.+=
T Consensus 823 ~~~~~e~p~~l~~l~~------~l-~~~~p~~~~kai~il~~~~ 859 (2102)
T PLN03200 823 WAVLAEVPSSLEPLVR------CL-AEGHPLVQDKAIEILSRLC 859 (2102)
T ss_pred hhhHHhccCchHHHHH------HH-HcCChHHHHHHHHHHHHHh
Confidence 222333455555531 12 3466678888888887653
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.3e-26 Score=237.12 Aligned_cols=337 Identities=19% Similarity=0.261 Sum_probs=274.6
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCc
Q 037612 152 VAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGV 231 (663)
Q Consensus 152 i~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGa 231 (663)
...|++ .+...+..|..+++|+|.. -+|+-.|++.+|+.+|+.-+-++..+.|.+|+.+|+||+..++||..|...|+
T Consensus 91 l~llqs-~d~~Iq~aa~~alGnlAVn-~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGa 168 (550)
T KOG4224|consen 91 LALLQS-CDKCIQCAAGEALGNLAVN-MENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGA 168 (550)
T ss_pred HHHHhC-cchhhhhhhhhhhccceec-cCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccc
Confidence 456778 8888889999999999975 66899999999999999999888899999999999999999999999999999
Q ss_pred hHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhccc
Q 037612 232 CLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKT 311 (663)
Q Consensus 232 Ip~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~ 311 (663)
+.||+++-++.+..+|.++.++|.||+. +.++|..++..|++|.||+++.+|.. +
T Consensus 169 L~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~--d---------------------- 223 (550)
T KOG4224|consen 169 LEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDL--D---------------------- 223 (550)
T ss_pred hhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCCh--h----------------------
Confidence 9999998889999999999999999995 67999999999999999999987731 0
Q ss_pred CccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcccccccc
Q 037612 312 NNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQ 391 (663)
Q Consensus 312 ~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~ 391 (663)
T Consensus 224 -------------------------------------------------------------------------------- 223 (550)
T KOG4224|consen 224 -------------------------------------------------------------------------------- 223 (550)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhc--cHHHHHHHhhcCChhHHHHHHHHH
Q 037612 392 SQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESR--ALLCFAVLLEKGPEDVQYNSAMAL 469 (663)
Q Consensus 392 ~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esg--al~~L~~LL~~~~~~vq~~aa~AL 469 (663)
.|..|..|+.+++. ...+.+...+++ -++.|+.|++++++.+|-.|..||
T Consensus 224 ---------------------------vqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lAL 275 (550)
T KOG4224|consen 224 ---------------------------VQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLAL 275 (550)
T ss_pred ---------------------------HHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHH
Confidence 13344445555554 234444445544 899999999999999999999999
Q ss_pred HHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhh----HhhccHHHHHHhcccC
Q 037612 470 MEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKA----TETRMIVPLVKLLDER 545 (663)
Q Consensus 470 ~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~----~e~~~I~pLV~LL~~~ 545 (663)
.+|++..+...++-++ +.++.++++++++...+...-+-.|-|++-..-+ .++|.+.|||++|+-+
T Consensus 276 rnlasdt~Yq~eiv~a----------g~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~ 345 (550)
T KOG4224|consen 276 RNLASDTEYQREIVEA----------GSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAG 345 (550)
T ss_pred hhhcccchhhhHHHhc----------CCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcC
Confidence 9999888776666653 5678899999876633333333444455543322 4678899999999977
Q ss_pred CHH-HHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCChHHHHhccchhh
Q 037612 546 EAE-VSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTV 624 (663)
Q Consensus 546 ~~~-v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~~~~i~~~~vl~~ 624 (663)
+.+ ++..|.-.|.|+|..- ..+.+.|.+.|+|+.|+.|+..+...+|..--.++..++.+..+.+.+...|++++
T Consensus 346 dnEeiqchAvstLrnLAass----e~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~i 421 (550)
T KOG4224|consen 346 DNEEIQCHAVSTLRNLAASS----EHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPI 421 (550)
T ss_pred CchhhhhhHHHHHHHHhhhh----hhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcce
Confidence 666 9999999999998542 23467899999999999999998877888866778889999999999999999999
Q ss_pred h-hhcccccccccc
Q 037612 625 L-EWTSKQSHMTQD 637 (663)
Q Consensus 625 L-~~~~~~~~~~q~ 637 (663)
| +|...+.+-.+.
T Consensus 422 LIp~t~s~s~Ev~g 435 (550)
T KOG4224|consen 422 LIPWTGSESEEVRG 435 (550)
T ss_pred eecccCccchhhcc
Confidence 8 776665554444
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.4e-26 Score=235.54 Aligned_cols=318 Identities=23% Similarity=0.276 Sum_probs=271.1
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCc
Q 037612 152 VAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGV 231 (663)
Q Consensus 152 i~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGa 231 (663)
+..+.+ ...+.+.+|..+|.||+.- +.||..|...|++.||.+|-++.+...|.+|..+|.||....+|++.+|.+|+
T Consensus 132 i~qmmt-d~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~ 209 (550)
T KOG4224|consen 132 ILQMMT-DGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGG 209 (550)
T ss_pred HHHhcC-CCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCC
Confidence 444556 6789999999999999987 77999999999999999998898999999999999999999999999999999
Q ss_pred hHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCC--cHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhc
Q 037612 232 CLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHN--IIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASN 309 (663)
Q Consensus 232 Ip~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g--~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~ 309 (663)
+|.||.+|+++++++|..+..+++|++- +...|..+++.+ .||.||.|+++|.
T Consensus 210 lpvLVsll~s~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s------------------------ 264 (550)
T KOG4224|consen 210 LPVLVSLLKSGDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDLMDDGS------------------------ 264 (550)
T ss_pred chhhhhhhccCChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHHhCCC------------------------
Confidence 9999999999999999999999999996 578899999988 9999999997552
Q ss_pred ccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcccccc
Q 037612 310 KTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQN 389 (663)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~ 389 (663)
T Consensus 265 -------------------------------------------------------------------------------- 264 (550)
T KOG4224|consen 265 -------------------------------------------------------------------------------- 264 (550)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHH
Q 037612 390 HQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMAL 469 (663)
Q Consensus 390 ~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL 469 (663)
.+.|..|+.||.+|+. ....+.+|+++|++|.+++||++.-...--....++
T Consensus 265 ---------------------------~kvkcqA~lALrnlas-dt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCI 316 (550)
T KOG4224|consen 265 ---------------------------DKVKCQAGLALRNLAS-DTEYQREIVEAGSLPLLVELLQSPMGPLILASVACI 316 (550)
T ss_pred ---------------------------hHHHHHHHHHHhhhcc-cchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHH
Confidence 1347788999999997 567889999999999999999998887777888888
Q ss_pred HHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcC-cchhhHHHHHHHHhhhchhh-----HhhccHHHHHHhcc
Q 037612 470 MEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKAD-SDLLIPCIKAVGNLARTFKA-----TETRMIVPLVKLLD 543 (663)
Q Consensus 470 ~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~-~~l~~~a~~aLg~La~~~~~-----~e~~~I~pLV~LL~ 543 (663)
.||+- .+-|..+ .+-.+...+|+++++-+| ++.|..+...|++||.+... .+.|.||.|..|+.
T Consensus 317 rnisi-hplNe~l---------I~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~l 386 (550)
T KOG4224|consen 317 RNISI-HPLNEVL---------IADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLL 386 (550)
T ss_pred hhccc-ccCcccc---------eecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHh
Confidence 88852 2222111 122456678999999888 66999999999999985443 36789999999999
Q ss_pred cCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCChHHHHhc
Q 037612 544 EREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSEDLAQA 619 (663)
Q Consensus 544 ~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~~~~i~~~ 619 (663)
++.-.++.|-..+++-++-.++ .-.++.+.|-++.|+.++.+.++.++-+|+.+|.|++.++.+-..+.++
T Consensus 387 D~pvsvqseisac~a~Lal~d~-----~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEa 457 (550)
T KOG4224|consen 387 DGPVSVQSEISACIAQLALNDN-----DKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEA 457 (550)
T ss_pred cCChhHHHHHHHHHHHHHhccc-----cHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHH
Confidence 9999999998888888875543 2457999999999999999888888999999999999998886655544
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.3e-24 Score=238.80 Aligned_cols=333 Identities=18% Similarity=0.252 Sum_probs=256.8
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHHhcCCC--cchHHHHHcCchHHHHHhhcc-CChhHHHHHHHHHHHHhcCChhHHHH
Q 037612 191 VGPLLKLVKEGKPEGQENAARAIGLLGRDP--ESVEHMIHSGVCLVFAKILKE-GPMKVQAVVAWAVSELAGNYPKCQDL 267 (663)
Q Consensus 191 Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~--~~~~~iv~aGaIp~Lv~lL~s-~~~~vq~~Aa~aL~nLA~~~~~~r~~ 267 (663)
.+..+..+.|++...|..|..++..|-... .....++..|.||.||+.|.. .++.+|..|||||.|+|....+.-..
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 788999999999888999999998887533 345566667999999999975 45999999999999999988777788
Q ss_pred HHhCCcHHHHHHHhccCcc--chhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCc
Q 037612 268 FAQHNIIRLLVGHLAFETV--QEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPS 345 (663)
Q Consensus 268 i~~~g~I~~LV~LL~sgt~--~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~ 345 (663)
+++.|++|.++.||.+... ++..-| +..+.. + ...
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavW--------------ALgNIa---------------------------g--ds~ 184 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVW--------------ALGNIA---------------------------G--DSP 184 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHH--------------HHhccc---------------------------c--CCh
Confidence 9999999999999997742 332222 211100 0 011
Q ss_pred cchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHH
Q 037612 346 QMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAAR 425 (663)
Q Consensus 346 ~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~ 425 (663)
+..+.|.+.+++. |+...+.. .++ ..+...+++
T Consensus 185 ~~Rd~vl~~g~l~----------------------------------pLl~~l~~----------~~~---~~~lRn~tW 217 (514)
T KOG0166|consen 185 DCRDYVLSCGALD----------------------------------PLLRLLNK----------SDK---LSMLRNATW 217 (514)
T ss_pred HHHHHHHhhcchH----------------------------------HHHHHhcc----------ccc---hHHHHHHHH
Confidence 2333443333322 11111110 111 358999999
Q ss_pred HHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHh
Q 037612 426 ALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRII 505 (663)
Q Consensus 426 AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll 505 (663)
+|.||++|..........+.+++.|.+||.+.|++|..+++|||++++++.......-- --++++.|+.++
T Consensus 218 ~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi---------~~gvv~~LV~lL 288 (514)
T KOG0166|consen 218 TLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVI---------DAGVVPRLVDLL 288 (514)
T ss_pred HHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHH---------HccchHHHHHHH
Confidence 99999999865666667788999999999999999999999999999977643322111 136889999999
Q ss_pred hhcCcchhhHHHHHHHHhhhchhh-----HhhccHHHHHHhcc-cCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcC
Q 037612 506 EKADSDLLIPCIKAVGNLARTFKA-----TETRMIVPLVKLLD-EREAEVSREASIALTKFACSDNYLHSDHSKAIISAG 579 (663)
Q Consensus 506 ~~~~~~l~~~a~~aLg~La~~~~~-----~e~~~I~pLV~LL~-~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~g 579 (663)
.+.++.++.||.+++||+++.... ...+.+|.|-.+|. +.+..+++||+|+++|++.+ + .+|..+++++|
T Consensus 289 ~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG-~---~~qiqaVida~ 364 (514)
T KOG0166|consen 289 GHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAG-N---QEQIQAVIDAN 364 (514)
T ss_pred cCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcC-C---HHHHHHHHHcc
Confidence 999999999999999999875443 34688999999998 55666999999999999864 3 68999999999
Q ss_pred CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCC-C-hHHHHhccchhhhh
Q 037612 580 GAKHLVQLVYFGEQIVQLSALVLLCYIALHVP-D-SEDLAQAEVLTVLE 626 (663)
Q Consensus 580 gi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~-~-~~~i~~~~vl~~L~ 626 (663)
-+|.|+.+|..++-..|..|+++++|++.... + -.-|++.|+++.|-
T Consensus 365 l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plc 413 (514)
T KOG0166|consen 365 LIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLC 413 (514)
T ss_pred cHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhh
Confidence 99999999999999899999999999974443 3 24488999999986
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.90 E-value=4.8e-23 Score=212.22 Aligned_cols=335 Identities=16% Similarity=0.193 Sum_probs=251.6
Q ss_pred ChHHHHHhhccCChHHHHHHHHHHHHhcC--CCcchHHHHHcCchHHHHHhhcc-CChhHHHHHHHHHHHHhcCChhHHH
Q 037612 190 GVGPLLKLVKEGKPEGQENAARAIGLLGR--DPESVEHMIHSGVCLVFAKILKE-GPMKVQAVVAWAVSELAGNYPKCQD 266 (663)
Q Consensus 190 ~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~--~~~~~~~iv~aGaIp~Lv~lL~s-~~~~vq~~Aa~aL~nLA~~~~~~r~ 266 (663)
-+|.|..-|-|++.+.|-.|..-...+-. +..-...++++|+||.||+++.+ ...-.|-.|||+|.|+|+.....-.
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk 151 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK 151 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence 46889998999888888888777666553 44557889999999999999954 4556778899999999986544446
Q ss_pred HHHhCCcHHHHHHHhccCcc--chhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCC
Q 037612 267 LFAQHNIIRLLVGHLAFETV--QEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTP 344 (663)
Q Consensus 267 ~i~~~g~I~~LV~LL~sgt~--~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~ 344 (663)
.+++.|++|.++.||.++.. .+.+ ||+..+.. + ..
T Consensus 152 vVvd~~AVPlfiqlL~s~~~~V~eQa--------------vWALGNiA------G-----------------------DS 188 (526)
T COG5064 152 VVVDAGAVPLFIQLLSSTEDDVREQA--------------VWALGNIA------G-----------------------DS 188 (526)
T ss_pred EEEeCCchHHHHHHHcCchHHHHHHH--------------HHHhcccc------C-----------------------Cc
Confidence 77899999999999987742 2322 33322211 0 01
Q ss_pred ccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHH
Q 037612 345 SQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAA 424 (663)
Q Consensus 345 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa 424 (663)
..|...|..++++. |+.-.+- ...++ ..|.+.+.
T Consensus 189 ~~~RD~vL~~gale----------------------------------plL~ll~----------ss~~~--ismlRn~T 222 (526)
T COG5064 189 EGCRDYVLQCGALE----------------------------------PLLGLLL----------SSAIH--ISMLRNAT 222 (526)
T ss_pred hhHHHHHHhcCchH----------------------------------HHHHHHH----------hccch--HHHHHHhH
Confidence 12333333333222 1110000 11222 36899999
Q ss_pred HHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHH
Q 037612 425 RALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRI 504 (663)
Q Consensus 425 ~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~l 504 (663)
++|.||++|.-..-..-.-+.+++.|.+|+.+.++++-..|+|||++|+.++.+..+ +.+.. +....|+++
T Consensus 223 WtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~---avld~------g~~~RLvEl 293 (526)
T COG5064 223 WTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQ---AVLDV------GIPGRLVEL 293 (526)
T ss_pred HHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHH---HHHhc------CCcHHHHHH
Confidence 999999999766666667788999999999999999999999999999988754322 11221 233569999
Q ss_pred hhhcCcchhhHHHHHHHHhhhchhhH-----hhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcC
Q 037612 505 IEKADSDLLIPCIKAVGNLARTFKAT-----ETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAG 579 (663)
Q Consensus 505 l~~~~~~l~~~a~~aLg~La~~~~~~-----e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~g 579 (663)
+.+++..++.|+++++||+.+..... ..|.++.+-.+|++..+.+++||+|.++|++.+. .+|..++++++
T Consensus 294 Ls~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGn----teqiqavid~n 369 (526)
T COG5064 294 LSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGN----TEQIQAVIDAN 369 (526)
T ss_pred hcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCC----HHHHHHHHhcc
Confidence 99999999999999999998754432 3577888999999999999999999999997653 69999999999
Q ss_pred CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCCh----HHHHhccchhhhh
Q 037612 580 GAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDS----EDLAQAEVLTVLE 626 (663)
Q Consensus 580 gi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~~----~~i~~~~vl~~L~ 626 (663)
-||||+.||.+-+-+++..|.|++.|...+..++ .-++..|++..|.
T Consensus 370 liPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc 420 (526)
T COG5064 370 LIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLC 420 (526)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHH
Confidence 9999999999999889999999999987555443 3467788888875
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.80 E-value=1.6e-16 Score=183.22 Aligned_cols=344 Identities=20% Similarity=0.235 Sum_probs=264.1
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcC
Q 037612 151 QVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSG 230 (663)
Q Consensus 151 li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aG 230 (663)
|+..|+. ++.+....+...|..|+-. .+|+..+.+.|+||+|++++.+++...+..|.+.|+|||.+++.+..|++.|
T Consensus 295 Lv~~Ldr-~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~G 372 (708)
T PF05804_consen 295 LVKCLDR-ENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLG 372 (708)
T ss_pred HHHHHcC-CCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCC
Confidence 5888999 9999999999999999875 6799999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcc
Q 037612 231 VCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNK 310 (663)
Q Consensus 231 aIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~ 310 (663)
.||.|+.+|.++ ..+..+...|.+|+. ++++|..|...++||.|+.+|-++...
T Consensus 373 lIPkLv~LL~d~--~~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~~~~~----------------------- 426 (708)
T PF05804_consen 373 LIPKLVELLKDP--NFREVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLENSEE----------------------- 426 (708)
T ss_pred CcHHHHHHhCCC--chHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHhCCCc-----------------------
Confidence 999999999865 456778899999997 579999999999999999987533100
Q ss_pred cCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccc
Q 037612 311 TNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNH 390 (663)
Q Consensus 311 ~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~ 390 (663)
T Consensus 427 -------------------------------------------------------------------------------- 426 (708)
T PF05804_consen 427 -------------------------------------------------------------------------------- 426 (708)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHH
Q 037612 391 QSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALM 470 (663)
Q Consensus 391 ~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~ 470 (663)
+.+..+...+.|||. +..|+..+.+.++++.|++..-+....+-. ..|.
T Consensus 427 ---------------------------~v~~eliaL~iNLa~-~~rnaqlm~~g~gL~~L~~ra~~~~D~lLl---KlIR 475 (708)
T PF05804_consen 427 ---------------------------EVQLELIALLINLAL-NKRNAQLMCEGNGLQSLMKRALKTRDPLLL---KLIR 475 (708)
T ss_pred ---------------------------cccHHHHHHHHHHhc-CHHHHHHHHhcCcHHHHHHHHHhcccHHHH---HHHH
Confidence 001123456677886 779999999999999999776655543322 3555
Q ss_pred HHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcC-cchhhHHHHHHHHhhhc-hh----hHhhccHHHHHHhcc-
Q 037612 471 EITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKAD-SDLLIPCIKAVGNLART-FK----ATETRMIVPLVKLLD- 543 (663)
Q Consensus 471 ~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~-~~l~~~a~~aLg~La~~-~~----~~e~~~I~pLV~LL~- 543 (663)
||+. ++...+. .|.+ .|..|++++..++ +++...|+..|+||.-. +. -.+.+.+|-|.++|.
T Consensus 476 NiS~---h~~~~k~-~f~~-------~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~ 544 (708)
T PF05804_consen 476 NISQ---HDGPLKE-LFVD-------FIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKP 544 (708)
T ss_pred HHHh---cCchHHH-HHHH-------HHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCC
Confidence 6643 3323332 3432 5677888888765 78999999999999743 11 134578999999995
Q ss_pred -cCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcC--ChhHHHHHHHHHHHHhcCCCChHHHHh-c
Q 037612 544 -EREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFG--EQIVQLSALVLLCYIALHVPDSEDLAQ-A 619 (663)
Q Consensus 544 -~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~--~~~~q~~Al~~L~~la~~~~~~~~i~~-~ 619 (663)
..++++.-|++..++++++++ +-+..+++.|-++.|+.||... |...+..-+.+...+..|...++.|.+ .
T Consensus 545 g~~~dDl~LE~Vi~~gtla~d~-----~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~ 619 (708)
T PF05804_consen 545 GASEDDLLLEVVILLGTLASDP-----ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKET 619 (708)
T ss_pred CCCChHHHHHHHHHHHHHHCCH-----HHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhcc
Confidence 446789999999999998764 3456788999999999999876 344566677788888899888888755 4
Q ss_pred cchhhhhhccccccccccC--CcHHHHHHHHHHHHhhh
Q 037612 620 EVLTVLEWTSKQSHMTQDE--TVDPLLQDAKSRLELYQ 655 (663)
Q Consensus 620 ~vl~~L~~~~~~~~~~q~~--~~~~l~~~a~~~le~~~ 655 (663)
++..-|. ..+++. .++.....++-++..|.
T Consensus 620 ~~~~yli------dL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 620 EIPAYLI------DLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred chHHHHH------HHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 5555554 233332 56666666666665554
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.75 E-value=8e-16 Score=177.57 Aligned_cols=308 Identities=19% Similarity=0.178 Sum_probs=237.4
Q ss_pred HHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChh
Q 037612 166 DAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMK 245 (663)
Q Consensus 166 ~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~ 245 (663)
-+...|.|||.+ +.+...+.+.|+|++|+++|++++.+....+++.|.+||.+.+|+..|.+.|+|++|++++.+++.+
T Consensus 268 v~~~lLlNLAed-~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~ 346 (708)
T PF05804_consen 268 VAFYLLLNLAED-PRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENED 346 (708)
T ss_pred HHHHHHHHHhcC-hHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHH
Confidence 344569999975 7788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCcccc
Q 037612 246 VQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVID 325 (663)
Q Consensus 246 vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~ 325 (663)
++..+.+.|.||+- +++.|..+++.|.||.|+.+|..++.
T Consensus 347 l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~~~--------------------------------------- 386 (708)
T PF05804_consen 347 LVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDPNF--------------------------------------- 386 (708)
T ss_pred HHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCCch---------------------------------------
Confidence 99999999999996 67999999999999999999975421
Q ss_pred chhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcC
Q 037612 326 DEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANT 405 (663)
Q Consensus 326 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~ 405 (663)
T Consensus 387 -------------------------------------------------------------------------------- 386 (708)
T PF05804_consen 387 -------------------------------------------------------------------------------- 386 (708)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhc-CChhHHHHHHHHHHHHhhhhhccHHHHh
Q 037612 406 KGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEK-GPEDVQYNSAMALMEITAVAEKDAELRR 484 (663)
Q Consensus 406 ~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~-~~~~vq~~aa~AL~~i~a~a~~~~~~rr 484 (663)
+..|...|++|+. ++.....++.+++++.++++|-. +.+.++.++...+.|++.... |.++-
T Consensus 387 --------------~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r-naqlm- 449 (708)
T PF05804_consen 387 --------------REVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR-NAQLM- 449 (708)
T ss_pred --------------HHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH-HHHHH-
Confidence 1123456777776 55666678888899999987654 567788888888888875543 33211
Q ss_pred hhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhh---ccHHHHHHhccc-CCHHHHHHHHHHHHhc
Q 037612 485 SAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATET---RMIVPLVKLLDE-REAEVSREASIALTKF 560 (663)
Q Consensus 485 ~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~---~~I~pLV~LL~~-~~~~v~~eAa~AL~~l 560 (663)
. . .++.+.|++..-+..+.+.. +-|-|++..-...+. ..|+||++++.+ .+++...|+...|+|+
T Consensus 450 --~-~-----g~gL~~L~~ra~~~~D~lLl---KlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL 518 (708)
T PF05804_consen 450 --C-E-----GNGLQSLMKRALKTRDPLLL---KLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANL 518 (708)
T ss_pred --H-h-----cCcHHHHHHHHHhcccHHHH---HHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhc
Confidence 1 0 23566666444443333332 344566665433332 358999999865 4778888999999999
Q ss_pred ccCCCCCChhhHHHHH-HcCCHHHHHHHHhcC--ChhHHHHHHHHHHHHhcCCCChHHHHhccchhhhhh
Q 037612 561 ACSDNYLHSDHSKAII-SAGGAKHLVQLVYFG--EQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVLEW 627 (663)
Q Consensus 561 a~~~~~~~~~~~~~Iv-~~ggi~~Lv~LL~~~--~~~~q~~Al~~L~~la~~~~~~~~i~~~~vl~~L~~ 627 (663)
+..+ .++..++ +.+-+|.|..+|..| ++.++..++.++..++....-...+++.|+++.|..
T Consensus 519 ~~~~-----ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~ 583 (708)
T PF05804_consen 519 TIPD-----LDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIE 583 (708)
T ss_pred ccCC-----cCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHH
Confidence 8654 2355544 679999999999866 333777889999989877666788999999999853
No 11
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.58 E-value=1.5e-13 Score=156.08 Aligned_cols=378 Identities=18% Similarity=0.180 Sum_probs=239.8
Q ss_pred hHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC---CCcc
Q 037612 146 CLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR---DPES 222 (663)
Q Consensus 146 ~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~---~~~~ 222 (663)
+.+-+-|.+|.. .....+.+||..|--++..+.+-|..+.+.||||.||.||++.+.++|.+|++||.||.- +++|
T Consensus 233 ~~lpe~i~mL~~-q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 233 PTLPEVISMLMS-QDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred cccHHHHHHHhc-cChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 344556889988 889999999999999999988889999999999999999999999999999999999993 3469
Q ss_pred hHHHHHcCchHHHHHhhcc-CChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhH
Q 037612 223 VEHMIHSGVCLVFAKILKE-GPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSI 301 (663)
Q Consensus 223 ~~~iv~aGaIp~Lv~lL~s-~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl 301 (663)
+-.|.+.++||.++++|+. +|.++++.++..|.||+++ +.....++.. ++..|-.-+-. .|+.|- .
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~-al~tLt~~vI~----P~Sgw~---~---- 378 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIITS-ALSTLTDNVII----PHSGWE---E---- 378 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHHH-HHHHHHHhhcc----cccccC---C----
Confidence 9999999999999999986 8999999999999999975 4666665543 33444332211 111110 0
Q ss_pred HHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccC
Q 037612 302 HAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNG 381 (663)
Q Consensus 302 ~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g 381 (663)
++.. +..+ ....+.+ +++=+.++-..+-..+. ......|
T Consensus 379 -----------------~~~~-~~~~---~~~vf~n-----~tgcLRNlSs~~~eaR~---------------~mr~c~G 417 (717)
T KOG1048|consen 379 -----------------EPAP-RKAE---DSTVFRN-----VTGCLRNLSSAGQEARE---------------QMRECDG 417 (717)
T ss_pred -----------------CCcc-cccc---cceeeeh-----hhhhhccccchhHHHHH---------------HHhhccc
Confidence 0000 0000 0000000 00000000000000000 0001112
Q ss_pred C-CccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCCh-------------------------
Q 037612 382 Q-DNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNS------------------------- 435 (663)
Q Consensus 382 ~-~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~------------------------- 435 (663)
. +..+. -+++.+.. .+. | .+-.++|..-|.||+.-..
T Consensus 418 LIdaL~~-----~iq~~i~~-------~~~-d----~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~ 480 (717)
T KOG1048|consen 418 LIDALLF-----SIQTAIQK-------SDL-D----SKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAE 480 (717)
T ss_pred hHHHHHH-----HHHHHHHh-------ccc-c----chhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCccc
Confidence 1 11000 00000000 000 1 1224445555555544111
Q ss_pred -------------hhhHH--Hh-------------hhccHHHHHHHh-hcCChhHHHHHHHHHHHHhhhhhccHHHHhhh
Q 037612 436 -------------PICRS--IT-------------ESRALLCFAVLL-EKGPEDVQYNSAMALMEITAVAEKDAELRRSA 486 (663)
Q Consensus 436 -------------~~~~~--I~-------------esgal~~L~~LL-~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a 486 (663)
.+|.. |. ..-.+.+-..|| ++.+....+.+|.||-|++++.-.-++.-+.+
T Consensus 481 ~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~ 560 (717)
T KOG1048|consen 481 SVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGA 560 (717)
T ss_pred ccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhh
Confidence 01000 00 011222323344 35677999999999999998765555544443
Q ss_pred cCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHh---hccHHHHHHhcccC------CHHHHHHHHHHH
Q 037612 487 FKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATE---TRMIVPLVKLLDER------EAEVSREASIAL 557 (663)
Q Consensus 487 ~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e---~~~I~pLV~LL~~~------~~~v~~eAa~AL 557 (663)
|-+. +-+.++|+++++.+++.+...++.+|.||+++.++++ +.+||-||+.|-.. +.++...+...|
T Consensus 561 v~~k----ekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl 636 (717)
T KOG1048|consen 561 VFRK----EKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTL 636 (717)
T ss_pred hhhh----ccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhH
Confidence 3121 2256889999999999999999999999999999876 56899999999433 367888899999
Q ss_pred HhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHH
Q 037612 558 TKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFG-EQIVQLSALVLL 603 (663)
Q Consensus 558 ~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~-~~~~q~~Al~~L 603 (663)
.|+.... .++.+.+.+.+|++-|+.+.++. +++.-..|-..|
T Consensus 637 ~niv~~~----~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL 679 (717)
T KOG1048|consen 637 NNIVRKN----VLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVL 679 (717)
T ss_pred HHHHHHh----HHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHH
Confidence 9997543 68899999999999999998775 554444344444
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.45 E-value=2.9e-12 Score=145.73 Aligned_cols=296 Identities=19% Similarity=0.209 Sum_probs=219.4
Q ss_pred ChHHHHHhhccCChHHHHHHHHHHHHhc-CCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCC--hhHHH
Q 037612 190 GVGPLLKLVKEGKPEGQENAARAIGLLG-RDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNY--PKCQD 266 (663)
Q Consensus 190 ~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs-~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~--~~~r~ 266 (663)
-+|--+.+|.+.++..|-+|+.=|..++ ++.+.+..+-+-|+|+.||.+|.+...+||.+|+|||.||.-.. .++.-
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 5888999999999999999999999999 57788899999999999999999999999999999999999543 34889
Q ss_pred HHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCcc
Q 037612 267 LFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQ 346 (663)
Q Consensus 267 ~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~ 346 (663)
.|.+.++||.|+++|+.-.
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~------------------------------------------------------------- 332 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQ------------------------------------------------------------- 332 (717)
T ss_pred hhhhcCChHHHHHHHHhhc-------------------------------------------------------------
Confidence 9999999999999997310
Q ss_pred chhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHH
Q 037612 347 MHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARA 426 (663)
Q Consensus 347 ~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~A 426 (663)
|. ++++..+..
T Consensus 333 -----------------------------------------------------------------D~----ev~e~iTg~ 343 (717)
T KOG1048|consen 333 -----------------------------------------------------------------DD----EVRELITGI 343 (717)
T ss_pred -----------------------------------------------------------------ch----HHHHHHHHH
Confidence 11 134555577
Q ss_pred HHHHhcCChhhhHHHhhhccHHHHHHHh--------------hcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCc
Q 037612 427 LWHLAKGNSPICRSITESRALLCFAVLL--------------EKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAP 492 (663)
Q Consensus 427 L~~La~gn~~~~~~I~esgal~~L~~LL--------------~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~ 492 (663)
||||+. ++..+..|.++. +..|-..+ +-.+.++-+|++.+|.|+++..+ +-||. |..
T Consensus 344 LWNLSS-~D~lK~~ii~~a-l~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~---eaR~~-mr~--- 414 (717)
T KOG1048|consen 344 LWNLSS-NDALKMLIITSA-LSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQ---EAREQ-MRE--- 414 (717)
T ss_pred Hhcccc-hhHHHHHHHHHH-HHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhH---HHHHH-Hhh---
Confidence 777775 456666655543 33222211 11235778899999999976332 33442 222
Q ss_pred hhHhHHHHHHHHhh----hcC--cchhhHHHHHHHHhhhchh-------------------------------h--Hh--
Q 037612 493 ACKAVVDQLFRIIE----KAD--SDLLIPCIKAVGNLARTFK-------------------------------A--TE-- 531 (663)
Q Consensus 493 a~~~vv~qL~~ll~----~~~--~~l~~~a~~aLg~La~~~~-------------------------------~--~e-- 531 (663)
|.+.|+.|+-.++ ..+ +.--+.|++-+-||+--.. . ..
T Consensus 415 -c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~ 493 (717)
T KOG1048|consen 415 -CDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSD 493 (717)
T ss_pred -ccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhch
Confidence 4667777776665 333 4455888888888765221 0 00
Q ss_pred --------------h-c--------cHHHHHHhc-ccCCHHHHHHHHHHHHhcccCCCCCChhhHH-HH-HHcCCHHHHH
Q 037612 532 --------------T-R--------MIVPLVKLL-DEREAEVSREASIALTKFACSDNYLHSDHSK-AI-ISAGGAKHLV 585 (663)
Q Consensus 532 --------------~-~--------~I~pLV~LL-~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~-~I-v~~ggi~~Lv 585 (663)
. | +|.|-..|| .+.++.+.+.++.||=|++.+.. ...++.. .+ .++.|.++|+
T Consensus 494 ~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~-~~~~~~~~~v~~kekgl~~l~ 572 (717)
T KOG1048|consen 494 DNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW-TWSEYMRGAVFRKEKGLPPLV 572 (717)
T ss_pred hcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC-cchhHHHhhhhhhccCccHHH
Confidence 0 1 366655556 47788999999999999975543 3455555 34 7899999999
Q ss_pred HHHhcCChhHHHHHHHHHHHHhcCCCChHHHHhccchhhhhh
Q 037612 586 QLVYFGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVLEW 627 (663)
Q Consensus 586 ~LL~~~~~~~q~~Al~~L~~la~~~~~~~~i~~~~vl~~L~~ 627 (663)
.||+.+++.+...+..+|.|++.+.-+.+.|. .++|+-|.-
T Consensus 573 ~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~ 613 (717)
T KOG1048|consen 573 ELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVR 613 (717)
T ss_pred HHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHH
Confidence 99999999888889999999999999999998 777887754
No 13
>PRK09687 putative lyase; Provisional
Probab=99.44 E-value=9.2e-12 Score=130.96 Aligned_cols=249 Identities=16% Similarity=0.149 Sum_probs=180.5
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHc
Q 037612 150 EQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHS 229 (663)
Q Consensus 150 ~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~a 229 (663)
+|+..|.. .+..+|..|+.+|..+-. ...++.+.+++++.++..+..|+++|+.|...+.. ..
T Consensus 27 ~L~~~L~d-~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~ 89 (280)
T PRK09687 27 ELFRLLDD-HNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QD 89 (280)
T ss_pred HHHHHHhC-CCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hH
Confidence 34777778 888889898888887631 23577888888888889999999999988753322 22
Q ss_pred CchHHHHHh-hccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhh
Q 037612 230 GVCLVFAKI-LKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVAS 308 (663)
Q Consensus 230 GaIp~Lv~l-L~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~ 308 (663)
-+++.|..+ ++++++.|+..|+.+|+++....+.. -+.++..|.. ..
T Consensus 90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~---------~~~a~~~l~~--------------------~~--- 137 (280)
T PRK09687 90 NVFNILNNLALEDKSACVRASAINATGHRCKKNPLY---------SPKIVEQSQI--------------------TA--- 137 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc---------chHHHHHHHH--------------------Hh---
Confidence 366788877 57778889999999998885321100 0111111100 00
Q ss_pred cccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccc
Q 037612 309 NKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQ 388 (663)
Q Consensus 309 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~ 388 (663)
T Consensus 138 -------------------------------------------------------------------------------- 137 (280)
T PRK09687 138 -------------------------------------------------------------------------------- 137 (280)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHH
Q 037612 389 NHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMA 468 (663)
Q Consensus 389 ~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~A 468 (663)
. -+++ .++..|++||+++. ...+++.|..+|+..+.+|+..|+++
T Consensus 138 ----------~----------D~~~----~VR~~a~~aLg~~~-----------~~~ai~~L~~~L~d~~~~VR~~A~~a 182 (280)
T PRK09687 138 ----------F----------DKST----NVRFAVAFALSVIN-----------DEAAIPLLINLLKDPNGDVRNWAAFA 182 (280)
T ss_pred ----------h----------CCCH----HHHHHHHHHHhccC-----------CHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 0 0122 24778888986442 23478999999999999999999999
Q ss_pred HHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHH
Q 037612 469 LMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAE 548 (663)
Q Consensus 469 L~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~ 548 (663)
|..+.. ++ ..+++.|+.++.+.+++++..|+.+||.+.. ..+||+|++.|+.++
T Consensus 183 Lg~~~~---~~---------------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~------~~av~~Li~~L~~~~-- 236 (280)
T PRK09687 183 LNSNKY---DN---------------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD------KRVLSVLIKELKKGT-- 236 (280)
T ss_pred HhcCCC---CC---------------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC------hhHHHHHHHHHcCCc--
Confidence 987621 11 2467889999999999999999999998652 468999999998766
Q ss_pred HHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHh-cCChhHHHHHHHHH
Q 037612 549 VSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVY-FGEQIVQLSALVLL 603 (663)
Q Consensus 549 v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~-~~~~~~q~~Al~~L 603 (663)
++.+|+.||+++.+. ..++.|.+++. ++|+.++..|.++|
T Consensus 237 ~~~~a~~ALg~ig~~---------------~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 237 VGDLIIEAAGELGDK---------------TLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred hHHHHHHHHHhcCCH---------------hHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 688999999999632 27899999997 78888888888776
No 14
>PRK09687 putative lyase; Provisional
Probab=99.38 E-value=3.1e-11 Score=127.00 Aligned_cols=235 Identities=18% Similarity=0.184 Sum_probs=175.9
Q ss_pred ChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHH
Q 037612 190 GVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFA 269 (663)
Q Consensus 190 ~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~ 269 (663)
-+++|+.+|.+.+..++..|+++|..+.. .-+++.+..+++++++.++..++++|+.|.... ..
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~----- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAK-RC----- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cc-----
Confidence 48899999999999999999999988763 446788899999999999999999999996422 11
Q ss_pred hCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchh
Q 037612 270 QHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHN 349 (663)
Q Consensus 270 ~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~ 349 (663)
...+++.|..++..+
T Consensus 88 ~~~a~~~L~~l~~~D----------------------------------------------------------------- 102 (280)
T PRK09687 88 QDNVFNILNNLALED----------------------------------------------------------------- 102 (280)
T ss_pred hHHHHHHHHHHHhcC-----------------------------------------------------------------
Confidence 112345554443211
Q ss_pred hHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHH
Q 037612 350 VVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWH 429 (663)
Q Consensus 350 ~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~ 429 (663)
+|+ .++..|+.+|++
T Consensus 103 -------------------------------------------------------------~d~----~VR~~A~~aLG~ 117 (280)
T PRK09687 103 -------------------------------------------------------------KSA----CVRASAINATGH 117 (280)
T ss_pred -------------------------------------------------------------CCH----HHHHHHHHHHhc
Confidence 122 247778888887
Q ss_pred HhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcC
Q 037612 430 LAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKAD 509 (663)
Q Consensus 430 La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~ 509 (663)
+..+... ....++..|..++...+..|++.+++||.+|. + ..+++.|+.++++.+
T Consensus 118 ~~~~~~~-----~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-----~---------------~~ai~~L~~~L~d~~ 172 (280)
T PRK09687 118 RCKKNPL-----YSPKIVEQSQITAFDKSTNVRFAVAFALSVIN-----D---------------EAAIPLLINLLKDPN 172 (280)
T ss_pred ccccccc-----cchHHHHHHHHHhhCCCHHHHHHHHHHHhccC-----C---------------HHHHHHHHHHhcCCC
Confidence 7543211 12234556777788889999999999997662 1 236789999999999
Q ss_pred cchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHh
Q 037612 510 SDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVY 589 (663)
Q Consensus 510 ~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~ 589 (663)
+++...++.+||.+... ...++++|+.+|.+.+.+|+.+|+++|+++.. ..++++|+..|.
T Consensus 173 ~~VR~~A~~aLg~~~~~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~---------------~~av~~Li~~L~ 233 (280)
T PRK09687 173 GDVRNWAAFALNSNKYD----NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD---------------KRVLSVLIKELK 233 (280)
T ss_pred HHHHHHHHHHHhcCCCC----CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC---------------hhHHHHHHHHHc
Confidence 99999999999988321 12589999999999999999999999999742 238999999999
Q ss_pred cCChhHHHHHHHHHHHHhcCCCChHHHHhccchhhhh
Q 037612 590 FGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVLE 626 (663)
Q Consensus 590 ~~~~~~q~~Al~~L~~la~~~~~~~~i~~~~vl~~L~ 626 (663)
.++ +...|+.+|..+ ++ ...+|.|.
T Consensus 234 ~~~--~~~~a~~ALg~i----g~------~~a~p~L~ 258 (280)
T PRK09687 234 KGT--VGDLIIEAAGEL----GD------KTLLPVLD 258 (280)
T ss_pred CCc--hHHHHHHHHHhc----CC------HhHHHHHH
Confidence 876 456788888655 22 35678887
No 15
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.33 E-value=1.5e-10 Score=119.80 Aligned_cols=190 Identities=16% Similarity=0.158 Sum_probs=159.0
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHH
Q 037612 148 IWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMI 227 (663)
Q Consensus 148 v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv 227 (663)
+..++..|+...++..++.|..+|++.+.. +.+++.|.+.|||+.+..+|.++++.+++.|.+||.|||.+.+|+..|-
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik 92 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIK 92 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHH
Confidence 356788998625889999999999998764 7899999999999999999999999999999999999999999999874
Q ss_pred HcCchHHHHHhhccC--ChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHH
Q 037612 228 HSGVCLVFAKILKEG--PMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVV 305 (663)
Q Consensus 228 ~aGaIp~Lv~lL~s~--~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv 305 (663)
. .|+.+.+...+. +..+|..+..+|.||+.. ++++..++. .||.|+.||.+|+.
T Consensus 93 ~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~-~~~~~~l~~--~i~~ll~LL~~G~~------------------- 148 (254)
T PF04826_consen 93 M--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT-NDYHHMLAN--YIPDLLSLLSSGSE------------------- 148 (254)
T ss_pred H--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC-cchhhhHHh--hHHHHHHHHHcCCh-------------------
Confidence 4 577777766553 578899999999999864 566777754 78999998876630
Q ss_pred HhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcc
Q 037612 306 VASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNN 385 (663)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~ 385 (663)
T Consensus 149 -------------------------------------------------------------------------------- 148 (254)
T PF04826_consen 149 -------------------------------------------------------------------------------- 148 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcC-ChhHHHH
Q 037612 386 VKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKG-PEDVQYN 464 (663)
Q Consensus 386 ~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~-~~~vq~~ 464 (663)
+.|..+.+.|+||+. |+.+.+.+....++..|+.|+.+. +.++-.+
T Consensus 149 --------------------------------~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~ 195 (254)
T PF04826_consen 149 --------------------------------KTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLR 195 (254)
T ss_pred --------------------------------HHHHHHHHHHHHhcc-CHHHHHHHHhccchhHHHHHHccCCccHHHHH
Confidence 136667789999997 788999999999999999999975 6788889
Q ss_pred HHHHHHHHhhh
Q 037612 465 SAMALMEITAV 475 (663)
Q Consensus 465 aa~AL~~i~a~ 475 (663)
+.+-+-||...
T Consensus 196 ~l~~~~ni~~~ 206 (254)
T PF04826_consen 196 VLTFFENINEN 206 (254)
T ss_pred HHHHHHHHHHh
Confidence 88888888533
No 16
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=1.6e-09 Score=112.97 Aligned_cols=317 Identities=18% Similarity=0.168 Sum_probs=213.1
Q ss_pred hhHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhcc--CChHHHHHHHHHHHHhc-CC
Q 037612 143 PILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKE--GKPEGQENAARAIGLLG-RD 219 (663)
Q Consensus 143 ~i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~s--g~~~~q~~Aa~AL~nLs-~~ 219 (663)
++.+..|.+ .++|+...-.++..+|.++....+. +.+.-|...+|++|.. .+.++-......+..=+ ++
T Consensus 107 ~~~it~~~l----a~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~h 178 (461)
T KOG4199|consen 107 DALITLLEL----AESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMH 178 (461)
T ss_pred chhhhHHHH----hhCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 444566652 3327777778888899888765444 5567889999999863 34555555555555555 57
Q ss_pred CcchHHHHHcCchHHHHHhhc-cCChhHHHHHHHHHHHHhcCChhHH----------HHHHhCCcHHHHHHHhccCccch
Q 037612 220 PESVEHMIHSGVCLVFAKILK-EGPMKVQAVVAWAVSELAGNYPKCQ----------DLFAQHNIIRLLVGHLAFETVQE 288 (663)
Q Consensus 220 ~~~~~~iv~aGaIp~Lv~lL~-s~~~~vq~~Aa~aL~nLA~~~~~~r----------~~i~~~g~I~~LV~LL~sgt~~~ 288 (663)
.-||+.+++.|+.+.+.+.|. .|..++.....|++..|.-+ +++| ..|+++|+...|++.|..+-
T Consensus 179 E~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~d-DDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~--- 254 (461)
T KOG4199|consen 179 EVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTD-DDIRVVFGQAHGHARTIAKEGILTALTEALQAGI--- 254 (461)
T ss_pred HHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCC-CceeeecchhhHHHHHHHHhhhHHHHHHHHHccC---
Confidence 889999999999999997774 46667888899999999863 3443 34555566666666554331
Q ss_pred hhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccc
Q 037612 289 HSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQG 368 (663)
Q Consensus 289 ~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 368 (663)
T Consensus 255 -------------------------------------------------------------------------------- 254 (461)
T KOG4199|consen 255 -------------------------------------------------------------------------------- 254 (461)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHH
Q 037612 369 NVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALL 448 (663)
Q Consensus 369 ~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~ 448 (663)
||. .-..+..+|..||- +.+.|++|.|+||+.
T Consensus 255 -------------------------------------------dp~----~L~~l~~tl~~lAV-r~E~C~~I~e~GGl~ 286 (461)
T KOG4199|consen 255 -------------------------------------------DPD----SLVSLSTTLKALAV-RDEICKSIAESGGLD 286 (461)
T ss_pred -------------------------------------------Ccc----HHHHHHHHHHHHHH-HHHHHHHHHHccCHH
Confidence 111 12234456677776 679999999999999
Q ss_pred HHHHHhhcC-ChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhch
Q 037612 449 CFAVLLEKG-PEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTF 527 (663)
Q Consensus 449 ~L~~LL~~~-~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~ 527 (663)
.|++++.+. ....++-+=.+++-+.+.++++ .++ .
T Consensus 287 tl~~~i~d~n~~~~r~l~k~~lslLralAG~D-------------------------------svK-------------s 322 (461)
T KOG4199|consen 287 TLLRCIDDSNEQGNRTLAKTCLSLLRALAGSD-------------------------------SVK-------------S 322 (461)
T ss_pred HHHHHHhhhchhhHHHHHHHHHHHHHHHhCCC-------------------------------chH-------------H
Confidence 999999874 3344432222222222222221 111 0
Q ss_pred hhHhhccHHHHHHhc--ccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChh--HHHHHHHHH
Q 037612 528 KATETRMIVPLVKLL--DEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQI--VQLSALVLL 603 (663)
Q Consensus 528 ~~~e~~~I~pLV~LL--~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~--~q~~Al~~L 603 (663)
.-.+.++.+-++.++ -..+|.|-.++..+++-++-. .++|+..+++.||...-|+-++..... +|.+|.+++
T Consensus 323 ~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR----~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~I 398 (461)
T KOG4199|consen 323 TIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLR----SPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMI 398 (461)
T ss_pred HHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhc----CcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 113467888888887 356788888888888888744 379999999999999999988866433 688899999
Q ss_pred HHHhcCCCChHHHHhccchhhhhhccccccccccCCcHHHHHHHHHHH
Q 037612 604 CYIALHVPDSEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRL 651 (663)
Q Consensus 604 ~~la~~~~~~~~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~l 651 (663)
.|++.+..+..++.=+.++..|.. .-+..|++.++-+..|+.-|
T Consensus 399 RNiv~rs~~~~~~~l~~GiE~Li~----~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 399 RNIVVRSAENRTILLANGIEKLIR----TAKANHETCEAAAKAALRDL 442 (461)
T ss_pred HHHHHhhhhccchHHhccHHHHHH----HHHhcCccHHHHHHHHHHhc
Confidence 999988777655444444555542 23345677777777777655
No 17
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.26 E-value=7.6e-11 Score=105.80 Aligned_cols=110 Identities=23% Similarity=0.280 Sum_probs=101.4
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCC-cchHHHH
Q 037612 149 WEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDP-ESVEHMI 227 (663)
Q Consensus 149 ~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~-~~~~~iv 227 (663)
..++..|+. ++.+.|..|+++|.+++..++.++..+++.|++|.|+++|.++++.+++.|+++|+||+.+. .....++
T Consensus 10 ~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 88 (120)
T cd00020 10 PALVSLLSS-SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVL 88 (120)
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 345888899 99999999999999999988889999999999999999999999999999999999999765 6677788
Q ss_pred HcCchHHHHHhhccCChhHHHHHHHHHHHHhc
Q 037612 228 HSGVCLVFAKILKEGPMKVQAVVAWAVSELAG 259 (663)
Q Consensus 228 ~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~ 259 (663)
+.|+++.|+++|.+++.++++.++|+|.+|+.
T Consensus 89 ~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 89 EAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999973
No 18
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.23 E-value=1.2e-08 Score=115.92 Aligned_cols=335 Identities=16% Similarity=0.183 Sum_probs=245.8
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHH
Q 037612 147 LIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHM 226 (663)
Q Consensus 147 ~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~i 226 (663)
+...+...|++ .+...|..++..|.+++.+++.....+.+.+.++.++.+|.+++..+.+.|+.+|.+|+.++..-..+
T Consensus 78 ~~~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l 156 (503)
T PF10508_consen 78 YQPFLQRGLTH-PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQL 156 (503)
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHH
Confidence 33445778889 99999999999999999887777788889999999999999999999999999999999999888899
Q ss_pred HHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHH
Q 037612 227 IHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVV 306 (663)
Q Consensus 227 v~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~ 306 (663)
++.+.++.|.+++...+..++-++-+.+.+++..+++....+.+.|.++.++..|+++.
T Consensus 157 ~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dD--------------------- 215 (503)
T PF10508_consen 157 FDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDD--------------------- 215 (503)
T ss_pred hCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCcc---------------------
Confidence 99999999999999878889999999999999999999999999999999988876421
Q ss_pred hhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccc
Q 037612 307 ASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNV 386 (663)
Q Consensus 307 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~ 386 (663)
T Consensus 216 -------------------------------------------------------------------------------- 215 (503)
T PF10508_consen 216 -------------------------------------------------------------------------------- 215 (503)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHH---
Q 037612 387 KQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQY--- 463 (663)
Q Consensus 387 ~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~--- 463 (663)
. -+|.+|...|..||. +..+...+.+.|.+.-|..++.....+-+.
T Consensus 216 --------------------------i----Lvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~ 264 (503)
T PF10508_consen 216 --------------------------I----LVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSL 264 (503)
T ss_pred --------------------------H----HHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccch
Confidence 0 135667777888887 677788888899999999888754433211
Q ss_pred --HHHH-HHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhh--------
Q 037612 464 --NSAM-ALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATET-------- 532 (663)
Q Consensus 464 --~aa~-AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~-------- 532 (663)
...+ ...+++.. +....-. .....++.|.+++++.|+..+..|..++|.++.+....+.
T Consensus 265 ~l~g~~~f~g~la~~--~~~~v~~--------~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~ 334 (503)
T PF10508_consen 265 LLPGRMKFFGNLARV--SPQEVLE--------LYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPA 334 (503)
T ss_pred hhhhHHHHHHHHHhc--ChHHHHH--------HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchH
Confidence 1111 11222221 1111110 0123556677888888999999999999999987655331
Q ss_pred --ccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHH-------HcCCHH-HHHHHHhcCChhHHHHHHHH
Q 037612 533 --RMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAII-------SAGGAK-HLVQLVYFGEQIVQLSALVL 602 (663)
Q Consensus 533 --~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv-------~~ggi~-~Lv~LL~~~~~~~q~~Al~~ 602 (663)
.++...-....++..+++..+..||+++-..+.....++...+. ..+... .++.+++.+=+.++..++..
T Consensus 335 ~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~ 414 (503)
T PF10508_consen 335 MKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRL 414 (503)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHH
Confidence 23555555567888899999999999995333211122221222 233344 56777877745588989999
Q ss_pred HHHHhcCCCChHHHHhc-cchhh
Q 037612 603 LCYIALHVPDSEDLAQA-EVLTV 624 (663)
Q Consensus 603 L~~la~~~~~~~~i~~~-~vl~~ 624 (663)
|..++.+.--.++|... |.+.-
T Consensus 415 l~~l~~~~Wg~~~i~~~~gfie~ 437 (503)
T PF10508_consen 415 LQALAAQPWGQREICSSPGFIEY 437 (503)
T ss_pred HHHHhcCHHHHHHHHhCccHHhh
Confidence 99998776555554444 44333
No 19
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.20 E-value=1.3e-10 Score=104.22 Aligned_cols=101 Identities=21% Similarity=0.312 Sum_probs=94.9
Q ss_pred HHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCC-CcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCCh
Q 037612 184 LIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRD-PESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYP 262 (663)
Q Consensus 184 ~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~-~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~ 262 (663)
.+++.|+|++|+++|+++++..++.|+++|.+++.+ ++....+++.|++|.|+++|+++++.++..++|+|+||+.+.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 467899999999999999999999999999999976 8899999999999999999999999999999999999998887
Q ss_pred hHHHHHHhCCcHHHHHHHhccC
Q 037612 263 KCQDLFAQHNIIRLLVGHLAFE 284 (663)
Q Consensus 263 ~~r~~i~~~g~I~~LV~LL~sg 284 (663)
..+..+.+.|+++.|+++|..+
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~ 103 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSS 103 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcC
Confidence 8889999999999999999876
No 20
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.19 E-value=1e-09 Score=113.70 Aligned_cols=216 Identities=17% Similarity=0.206 Sum_probs=161.6
Q ss_pred HHhcCChHHHHHhhccC-ChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChh
Q 037612 185 IIEEGGVGPLLKLVKEG-KPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPK 263 (663)
Q Consensus 185 Ive~G~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~ 263 (663)
+.+.+.+..|+.+|+.. ++.+|+.|..+++|.+.++.++..|.+.|+++.+..+|.++++.+++.|.++|.||+.+ .+
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~e 86 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DE 86 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hh
Confidence 46778899999999965 69999999999999999999999999999999999999999999999999999999974 56
Q ss_pred HHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCC
Q 037612 264 CQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKT 343 (663)
Q Consensus 264 ~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~ 343 (663)
++..+.. .|+.+++.+.+..
T Consensus 87 n~~~Ik~--~i~~Vc~~~~s~~---------------------------------------------------------- 106 (254)
T PF04826_consen 87 NQEQIKM--YIPQVCEETVSSP---------------------------------------------------------- 106 (254)
T ss_pred hHHHHHH--HHHHHHHHHhcCC----------------------------------------------------------
Confidence 6666532 2333333221110
Q ss_pred CccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHH
Q 037612 344 PSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMA 423 (663)
Q Consensus 344 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~A 423 (663)
-|. .+|..+
T Consensus 107 -------------------------------------------------------------------lns----~~Q~ag 115 (254)
T PF04826_consen 107 -------------------------------------------------------------------LNS----EVQLAG 115 (254)
T ss_pred -------------------------------------------------------------------CCC----HHHHHH
Confidence 011 246678
Q ss_pred HHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHH
Q 037612 424 ARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFR 503 (663)
Q Consensus 424 a~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ 503 (663)
.++|.+|+.-+ ..+..+ .+.+++|..||.+|++.+|.++...|++++. |++..|..+... +...++.
T Consensus 116 LrlL~nLtv~~-~~~~~l--~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~----np~~~~~Ll~~q------~~~~~~~ 182 (254)
T PF04826_consen 116 LRLLTNLTVTN-DYHHML--ANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE----NPDMTRELLSAQ------VLSSFLS 182 (254)
T ss_pred HHHHHccCCCc-chhhhH--HhhHHHHHHHHHcCChHHHHHHHHHHHHhcc----CHHHHHHHHhcc------chhHHHH
Confidence 88999998643 334444 3479999999999999999999999999963 566666554432 5667888
Q ss_pred Hhhhc-CcchhhHHHHHHHHhhhchhhHh------hccHHHHHHhcccC
Q 037612 504 IIEKA-DSDLLIPCIKAVGNLARTFKATE------TRMIVPLVKLLDER 545 (663)
Q Consensus 504 ll~~~-~~~l~~~a~~aLg~La~~~~~~e------~~~I~pLV~LL~~~ 545 (663)
++... +.++...++.-..||...+.... ..--.+|.-++.+.
T Consensus 183 Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~ 231 (254)
T PF04826_consen 183 LFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGES 231 (254)
T ss_pred HHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccH
Confidence 88876 46788888888899987666431 22345566555443
No 21
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.12 E-value=7.7e-09 Score=125.14 Aligned_cols=59 Identities=19% Similarity=0.227 Sum_probs=31.0
Q ss_pred ChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHh
Q 037612 190 GVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELA 258 (663)
Q Consensus 190 ~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA 258 (663)
.++.|+..|++.++.+++.|+.+|..+. ..++++.|+++|++.++.|+..|+.+|..+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~ 680 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT----------PPGFGPALVAALGDGAAAVRRAAAEGLRELV 680 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555442 1234555555555555555555555555553
No 22
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.11 E-value=1.5e-08 Score=108.62 Aligned_cols=356 Identities=16% Similarity=0.168 Sum_probs=218.4
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC----ChHHHH---HHHHHHHHhc-CCCcch
Q 037612 152 VAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEG----KPEGQE---NAARAIGLLG-RDPESV 223 (663)
Q Consensus 152 i~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg----~~~~q~---~Aa~AL~nLs-~~~~~~ 223 (663)
.....+ .+.|.-++..++|+|++.+|+++|..+.+.||-..++++|++- ++.--+ -+-..|.|-. .+++.+
T Consensus 93 rq~psS-~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~ 171 (604)
T KOG4500|consen 93 RQTPSS-PDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELR 171 (604)
T ss_pred HhCCCC-CcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHH
Confidence 445566 6788999999999999999999999999999988888888753 232222 3334555555 457789
Q ss_pred HHHHHcCchHHHHHhhccC----------------------------------------------ChhHHHHHHHHHHHH
Q 037612 224 EHMIHSGVCLVFAKILKEG----------------------------------------------PMKVQAVVAWAVSEL 257 (663)
Q Consensus 224 ~~iv~aGaIp~Lv~lL~s~----------------------------------------------~~~vq~~Aa~aL~nL 257 (663)
.++++.|+++.|+.++.-+ .++..++.-..+...
T Consensus 172 aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~ 251 (604)
T KOG4500|consen 172 AQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKA 251 (604)
T ss_pred HHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHH
Confidence 9999999999777665321 122333334444444
Q ss_pred hcCChhHHHHHHhCCcHHHHHHHhcc-CccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCC
Q 037612 258 AGNYPKCQDLFAQHNIIRLLVGHLAF-ETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIP 336 (663)
Q Consensus 258 A~~~~~~r~~i~~~g~I~~LV~LL~s-gt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 336 (663)
+.+ +...-.+++.|.+..+++|++. .+. +.++...++......... ++
T Consensus 252 aen-d~Vkl~la~~gl~e~~~~lv~~~k~~---------t~k~d~~~l~k~~~el~v---------ll------------ 300 (604)
T KOG4500|consen 252 AEN-DLVKLSLAQNGLLEDSIDLVRNMKDF---------TKKTDMLNLFKRIAELDV---------LL------------ 300 (604)
T ss_pred hcC-cceeeehhhcchHHHHHHHHHhcccc---------cchHHHHHHHHhhhhHhh---------hh------------
Confidence 432 2444455666666666666653 111 111111112111110000 00
Q ss_pred CCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHH
Q 037612 337 HPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATK 416 (663)
Q Consensus 337 ~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~ 416 (663)
.+|+ .-|+.+-. ++ . ..+++.+ - -.+.|
T Consensus 301 -ltGD---eSMq~L~~---------------------------~p---~--------~l~~~~s--w----~~S~d---- 328 (604)
T KOG4500|consen 301 -LTGD---ESMQKLHA---------------------------DP---Q--------FLDFLES--W----FRSDD---- 328 (604)
T ss_pred -hcCc---hHHHHHhc---------------------------Cc---H--------HHHHHHH--H----hcCCc----
Confidence 0000 00111110 00 0 0000000 0 00011
Q ss_pred HHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhh-----cCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCC
Q 037612 417 AYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLE-----KGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNA 491 (663)
Q Consensus 417 ~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~-----~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~ 491 (663)
..+..+++-|++|||+ ++++|...++.+-+--|..+|. .|+.++|+.+..||.|+. -|-..|+.|-+
T Consensus 329 ~~l~t~g~LaigNfaR-~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~-----IPv~nka~~~~-- 400 (604)
T KOG4500|consen 329 SNLITMGSLAIGNFAR-RDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLM-----IPVSNKAHFAP-- 400 (604)
T ss_pred hhHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcc-----ccCCchhhccc--
Confidence 2478999999999998 7899999999999888887775 466789999999999885 22233444544
Q ss_pred chhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHh---------hccHHHHHHhcccCCHH-HHHHHHHHHHhcc
Q 037612 492 PACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATE---------TRMIVPLVKLLDEREAE-VSREASIALTKFA 561 (663)
Q Consensus 492 ~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e---------~~~I~pLV~LL~~~~~~-v~~eAa~AL~~la 561 (663)
.||++.++..++...|-+.---. |.+.-+..+.| ...+..||+--.+.|+. |..|.-+-|.-|.
T Consensus 401 ---aGvteaIL~~lk~~~ppv~fkll---gTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lI 474 (604)
T KOG4500|consen 401 ---AGVTEAILLQLKLASPPVTFKLL---GTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLI 474 (604)
T ss_pred ---cchHHHHHHHHHhcCCcchHHHH---HHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHH
Confidence 57888888888887765543332 33322222211 12466777776666665 8888888888775
Q ss_pred cCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 037612 562 CSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIA 607 (663)
Q Consensus 562 ~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la 607 (663)
-...| .+-...|.+.|||+++|.++....-..|..|+.+||.++
T Consensus 475 kHs~~--kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~ 518 (604)
T KOG4500|consen 475 KHSKY--KDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTE 518 (604)
T ss_pred HhhHh--hhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHH
Confidence 32211 244567889999999999998887778999999999875
No 23
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=1.8e-07 Score=98.03 Aligned_cols=363 Identities=17% Similarity=0.144 Sum_probs=229.9
Q ss_pred hhhhhHHHHHHHHHHHHHH----hhhcCcccccceecccccHHHHHHHHHh-hhcchHHHHhhccccCCCCccccCCCCc
Q 037612 64 RIIDDTEQVLEKALSLVIK----YRANGIIKRVFTIIPAAAFRKMSSQLEN-SIGDVSWLLRVSASAEDRDDEYLGLPPI 138 (663)
Q Consensus 64 ~l~~~~~~tl~~a~~l~~~----C~~~~~~~r~~~i~~~~~l~~l~~~L~~-~~~~~~~ll~~s~~~~~~~~~~~~~p~i 138 (663)
.|-..+++.+++.+.++.+ |++ |.--|+.. ..+|+.+-++..|.. ..++...+++.-.... ...-+-|.+
T Consensus 67 ~i~e~i~~~~~E~s~ll~~l~d~ck~-~~A~r~la-~~~ga~~~~it~~~la~~~~~~~l~ksL~al~---~lt~~qpdl 141 (461)
T KOG4199|consen 67 KIKEHIGQKLEETTELLEQLADECKK-SLAHRVLA-GKNGAHDALITLLELAESPNESVLKKSLEAIN---SLTHKQPDL 141 (461)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhh-hHHHHHHh-ccCCCcchhhhHHHHhhCCchhHHHHHHHHHH---HhhcCCcch
Confidence 3444466777777776552 332 33334332 367899998888864 2344444433111000 011133444
Q ss_pred ccchhhHhHHHHHHHHhccC-CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHh-hccCChHHHHHHHHHHHHh
Q 037612 139 AANEPILCLIWEQVAILYTA-GSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKL-VKEGKPEGQENAARAIGLL 216 (663)
Q Consensus 139 a~~~~i~~~v~~li~~L~~~-G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~L-L~sg~~~~q~~Aa~AL~nL 216 (663)
...+++.-. +..|... .+.+.-......+.--+-.++.||+.+++.+..|.+..- ...|..+.-+++.||+.-|
T Consensus 142 ~da~g~~vv----v~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l 217 (461)
T KOG4199|consen 142 FDAEAMAVV----LKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRAL 217 (461)
T ss_pred hccccHHHH----HHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHh
Confidence 444444333 3333220 333333333344444445568999999999999988844 4567778999999999999
Q ss_pred cCCCc----------chHHHHHcCchHHHHHhhccC-ChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCc
Q 037612 217 GRDPE----------SVEHMIHSGVCLVFAKILKEG-PMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFET 285 (663)
Q Consensus 217 s~~~~----------~~~~iv~aGaIp~Lv~lL~s~-~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt 285 (663)
..+++ +.+.|+..|+...|++.|+-+ +|++......+|..||-. .+.-..|.+.|++..|+.++.+.+
T Consensus 218 ~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr-~E~C~~I~e~GGl~tl~~~i~d~n 296 (461)
T KOG4199|consen 218 LTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR-DEICKSIAESGGLDTLLRCIDDSN 296 (461)
T ss_pred cCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHhhhc
Confidence 98765 456789999999999999874 588999999999999975 577788899999999999997532
Q ss_pred cchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCccc
Q 037612 286 VQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQ 365 (663)
Q Consensus 286 ~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~ 365 (663)
.++. +
T Consensus 297 ~~~~------------r--------------------------------------------------------------- 301 (461)
T KOG4199|consen 297 EQGN------------R--------------------------------------------------------------- 301 (461)
T ss_pred hhhH------------H---------------------------------------------------------------
Confidence 1110 0
Q ss_pred ccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhc
Q 037612 366 KQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESR 445 (663)
Q Consensus 366 ~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esg 445 (663)
.+...+...|..|| |++++-..|++.|
T Consensus 302 ----------------------------------------------------~l~k~~lslLralA-G~DsvKs~IV~~g 328 (461)
T KOG4199|consen 302 ----------------------------------------------------TLAKTCLSLLRALA-GSDSVKSTIVEKG 328 (461)
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHh-CCCchHHHHHHhc
Confidence 01222334455555 8999999999999
Q ss_pred cHHHHHHHhhc--CChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHh
Q 037612 446 ALLCFAVLLEK--GPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNL 523 (663)
Q Consensus 446 al~~L~~LL~~--~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~L 523 (663)
|++-++.|+.. .++.|-..+..+++-||-- .||.-+.+|
T Consensus 329 g~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR---~pdhsa~~i------------------------------------ 369 (461)
T KOG4199|consen 329 GLDKIITLALRHSDDPLVIQEVMAIISILCLR---SPDHSAKAI------------------------------------ 369 (461)
T ss_pred ChHHHHHHHHHcCCChHHHHHHHHHHHHHHhc---CcchHHHHH------------------------------------
Confidence 99999998874 3455555555555555411 112111111
Q ss_pred hhchhhHhhccHHHHHHhcc--cCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHH
Q 037612 524 ARTFKATETRMIVPLVKLLD--EREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALV 601 (663)
Q Consensus 524 a~~~~~~e~~~I~pLV~LL~--~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~ 601 (663)
|+|+-...|+.+. -....++++|+|.+.|++..+ .+++ .+.=..||+.|++.-+...+.....|-.
T Consensus 370 -------e~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs----~~~~-~~~l~~GiE~Li~~A~~~h~tce~~aka 437 (461)
T KOG4199|consen 370 -------EAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS----AENR-TILLANGIEKLIRTAKANHETCEAAAKA 437 (461)
T ss_pred -------hcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh----hhcc-chHHhccHHHHHHHHHhcCccHHHHHHH
Confidence 1222222344442 224568999999999998543 2344 4555678999999888776656555777
Q ss_pred HHHHHhcCCCChHH
Q 037612 602 LLCYIALHVPDSED 615 (663)
Q Consensus 602 ~L~~la~~~~~~~~ 615 (663)
+|.-+-.++..+|+
T Consensus 438 ALRDLGc~v~lre~ 451 (461)
T KOG4199|consen 438 ALRDLGCDVYLREE 451 (461)
T ss_pred HHHhcCcchhhHHH
Confidence 78777677766655
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.04 E-value=2.5e-07 Score=105.19 Aligned_cols=309 Identities=17% Similarity=0.189 Sum_probs=225.2
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcc-hHHHHHc
Q 037612 151 QVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPES-VEHMIHS 229 (663)
Q Consensus 151 li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~-~~~iv~a 229 (663)
++..|++ .+.+.-..++..|..+...- .-..+ ..+..+.|...|.++++.++..++++|.++..+.+. ...+.+.
T Consensus 43 lf~~L~~-~~~e~v~~~~~iL~~~l~~~--~~~~l-~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 43 LFDCLNT-SNREQVELICDILKRLLSAL--SPDSL-LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHhh-cChHHHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 5778888 77777788888888876532 23333 467889999999999999999999999999986655 5666789
Q ss_pred CchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhc
Q 037612 230 GVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASN 309 (663)
Q Consensus 230 GaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~ 309 (663)
+.++.++.+|.+++.++.+.|+.+|.+|+.+.++ .+.+...+.++.|..++...+
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~-~~~l~~~~~~~~L~~l~~~~~------------------------ 173 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG-LEQLFDSNLLSKLKSLMSQSS------------------------ 173 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh-HHHHhCcchHHHHHHHHhccC------------------------
Confidence 9999999999999999999999999999986544 445557777777777664321
Q ss_pred ccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcccccc
Q 037612 310 KTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQN 389 (663)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~ 389 (663)
T Consensus 174 -------------------------------------------------------------------------------- 173 (503)
T PF10508_consen 174 -------------------------------------------------------------------------------- 173 (503)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHH
Q 037612 390 HQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMAL 469 (663)
Q Consensus 390 ~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL 469 (663)
+ ..+.++-..+.+++..++..-..+.++|.+..++..|++.|.=+|.++...|
T Consensus 174 -----------------------~----~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell 226 (503)
T PF10508_consen 174 -----------------------D----IVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELL 226 (503)
T ss_pred -----------------------H----HHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHH
Confidence 0 0122344556777777888888888999999999999998889999999999
Q ss_pred HHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcC--c---chhhHHH-HHHHHhhhchhhHh----hccHHHHH
Q 037612 470 MEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKAD--S---DLLIPCI-KAVGNLARTFKATE----TRMIVPLV 539 (663)
Q Consensus 470 ~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~--~---~l~~~a~-~aLg~La~~~~~~e----~~~I~pLV 539 (663)
.+++.. .++ .+... -.++++.|..++...+ + .+.+|+. +..|+++...+..- ...+..|.
T Consensus 227 ~~La~~-~~g---~~yL~------~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~ 296 (503)
T PF10508_consen 227 SELAET-PHG---LQYLE------QQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLF 296 (503)
T ss_pred HHHHcC-hhH---HHHHH------hCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 999762 222 22111 1468899999987654 2 3456665 67788888522211 13456667
Q ss_pred HhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHH-HHcC-CHHHHHHH----HhcCChhHHHHHHHHHHHHhcCC
Q 037612 540 KLLDEREAEVSREASIALTKFACSDNYLHSDHSKAI-ISAG-GAKHLVQL----VYFGEQIVQLSALVLLCYIALHV 610 (663)
Q Consensus 540 ~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~I-v~~g-gi~~Lv~L----L~~~~~~~q~~Al~~L~~la~~~ 610 (663)
+++++.++..+.-|..+|+.++++ .++-..+ ...| .++..+.- .+.+...++..++.+|.++....
T Consensus 297 ~~~~s~d~~~~~~A~dtlg~igst-----~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~ 368 (503)
T PF10508_consen 297 SMLESQDPTIREVAFDTLGQIGST-----VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSG 368 (503)
T ss_pred HHhCCCChhHHHHHHHHHHHHhCC-----HHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcC
Confidence 777889999999999999999865 3555566 4433 44555443 44455558999999999995333
No 25
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.04 E-value=2.8e-08 Score=120.34 Aligned_cols=273 Identities=16% Similarity=0.105 Sum_probs=196.4
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHH
Q 037612 148 IWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMI 227 (663)
Q Consensus 148 v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv 227 (663)
+-.|+..|+. .+...|..|+..|..+. ..+.++.|+.+|+..++.++..|+.+|..+.....
T Consensus 623 ~~~L~~~L~D-~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~------ 684 (897)
T PRK13800 623 VAELAPYLAD-PDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP------ 684 (897)
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC------
Confidence 4567889999 99999999999999863 23579999999998899999999999988853221
Q ss_pred HcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHh
Q 037612 228 HSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVA 307 (663)
Q Consensus 228 ~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~ 307 (663)
..+.|...|.+.++.|+..|+.+|..+...+ ...|+..|+.... .+ ....+.+|...
T Consensus 685 ---~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d~------~V--R~~Av~aL~~~ 741 (897)
T PRK13800 685 ---PAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAALGDPDH------RV--RIEAVRALVSV 741 (897)
T ss_pred ---chHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHhcCCCH------HH--HHHHHHHHhcc
Confidence 2368889999999999999999999875321 3456777765431 01 00011111100
Q ss_pred hcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcccc
Q 037612 308 SNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVK 387 (663)
Q Consensus 308 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~ 387 (663)
.. . ..
T Consensus 742 ~~-----------------~---------------------~~------------------------------------- 746 (897)
T PRK13800 742 DD-----------------V---------------------ES------------------------------------- 746 (897)
T ss_pred cC-----------------c---------------------HH-------------------------------------
Confidence 00 0 00
Q ss_pred ccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHH
Q 037612 388 QNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAM 467 (663)
Q Consensus 388 ~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~ 467 (663)
+. ....-+++ .++..|+.+|+.+..+ +..+++.|..++...++.|+..|+.
T Consensus 747 ------l~----------~~l~D~~~----~VR~~aa~aL~~~~~~---------~~~~~~~L~~ll~D~d~~VR~aA~~ 797 (897)
T PRK13800 747 ------VA----------GAATDENR----EVRIAVAKGLATLGAG---------GAPAGDAVRALTGDPDPLVRAAALA 797 (897)
T ss_pred ------HH----------HHhcCCCH----HHHHHHHHHHHHhccc---------cchhHHHHHHHhcCCCHHHHHHHHH
Confidence 00 00011234 4689999999887653 2234778999999999999999999
Q ss_pred HHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCH
Q 037612 468 ALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREA 547 (663)
Q Consensus 468 AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~ 547 (663)
+|.++... ..+++.|+..+++.++.+...++.+||.+.. ...+++|+.+|++.+.
T Consensus 798 aLg~~g~~-------------------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~------~~a~~~L~~~L~D~~~ 852 (897)
T PRK13800 798 ALAELGCP-------------------PDDVAAATAALRASAWQVRQGAARALAGAAA------DVAVPALVEALTDPHL 852 (897)
T ss_pred HHHhcCCc-------------------chhHHHHHHHhcCCChHHHHHHHHHHHhccc------cchHHHHHHHhcCCCH
Confidence 99776311 1234557788888888999999999997752 3468999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHH
Q 037612 548 EVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLC 604 (663)
Q Consensus 548 ~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~ 604 (663)
.|+++|++||+++..+ + ...+.|..+|...++.++..|..+|.
T Consensus 853 ~VR~~A~~aL~~~~~~-----~---------~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 853 DVRKAAVLALTRWPGD-----P---------AARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHHHHHHhccCCC-----H---------HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 9999999999997311 1 13678889999999988888888873
No 26
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.91 E-value=4.1e-08 Score=105.40 Aligned_cols=334 Identities=15% Similarity=0.135 Sum_probs=218.3
Q ss_pred HHHHHHHHHHHHHhhcCChh----hHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC-CCcchHHHHHcCchHHH
Q 037612 161 LEHKSDAAASLVSLARDNDR----YGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR-DPESVEHMIHSGVCLVF 235 (663)
Q Consensus 161 ~e~k~~AA~~L~~La~~~~~----~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~-~~~~~~~iv~aGaIp~L 235 (663)
...+..++.++...+.. +. +++.-+++|.+.+|.+...|++.++.+.--+||+|++. ++++|..+.+.||-..+
T Consensus 56 ~tv~~~qssC~A~~sk~-ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqiv 134 (604)
T KOG4500|consen 56 DTVYLFQSSCLADRSKN-EVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIV 134 (604)
T ss_pred chhhhhhHHHHHHHhhh-HHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceeh
Confidence 34444555556655532 32 34444668899999999999989999999999999996 78999999999998889
Q ss_pred HHhhcc---CC----hhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhh
Q 037612 236 AKILKE---GP----MKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVAS 308 (663)
Q Consensus 236 v~lL~s---~~----~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~ 308 (663)
+++|+. .+ .+.-..+.+.|.|-.-++.+.|..+++.|+++.|+.++.-+- ++. .+|.-+.++
T Consensus 135 id~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~----------qNa-a~~e~ll~~ 203 (604)
T KOG4500|consen 135 IDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDW----------QNA-ALTEKLLAP 203 (604)
T ss_pred HhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhccc----------ccH-HHHHHHHhc
Confidence 998864 22 245566778888988888899999999999999999987552 110 111111110
Q ss_pred cccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccc
Q 037612 309 NKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQ 388 (663)
Q Consensus 309 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~ 388 (663)
.- + |-+.+. .|-+. + . .++++..
T Consensus 204 f~------------------------------n-----lls~~~-e~~~~--------------~----~---~d~sl~~ 226 (604)
T KOG4500|consen 204 FF------------------------------N-----LLSFVC-EMLYP--------------F----C---KDCSLVF 226 (604)
T ss_pred cc------------------------------c-----HHHHHH-Hhhhh--------------h----h---ccchHHH
Confidence 00 0 000000 00000 0 0 0000000
Q ss_pred cccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHH
Q 037612 389 NHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMA 468 (663)
Q Consensus 389 ~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~A 468 (663)
.+.+.+ ++.- -+| ..+|.-.-|...+. |+..+....+.|-+.|+..|++.-...-++.=+.+
T Consensus 227 ----~l~~ll------~~~v-~~d------~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~ 288 (604)
T KOG4500|consen 227 ----MLLQLL------PSMV-RED------IDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLN 288 (604)
T ss_pred ----HHHHHH------HHhh-ccc------hhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcccccchHHHHH
Confidence 000000 0000 011 34556666666665 88999999999999999999998554444444444
Q ss_pred HHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchh-hHHHHHHHHhhhchhhHhhccHHHHHHhcccCCH
Q 037612 469 LMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLL-IPCIKAVGNLARTFKATETRMIVPLVKLLDEREA 547 (663)
Q Consensus 469 L~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~-~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~ 547 (663)
++... . .+.-++-.+|+..+ ..+ ......-++.-+++.+.
T Consensus 289 l~k~~------------------------~-el~vllltGDeSMq~L~~--------------~p~~l~~~~sw~~S~d~ 329 (604)
T KOG4500|consen 289 LFKRI------------------------A-ELDVLLLTGDESMQKLHA--------------DPQFLDFLESWFRSDDS 329 (604)
T ss_pred HHHhh------------------------h-hHhhhhhcCchHHHHHhc--------------CcHHHHHHHHHhcCCch
Confidence 43221 1 12334444443322 111 01256777888899999
Q ss_pred HHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhc-----CChhHHHHHHHHHHHHhcCCCChHHHHhccch
Q 037612 548 EVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYF-----GEQIVQLSALVLLCYIALHVPDSEDLAQAEVL 622 (663)
Q Consensus 548 ~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~-----~~~~~q~~Al~~L~~la~~~~~~~~i~~~~vl 622 (663)
+..-.++.|++||+-.+ +|+..+++.|-+..|+.+|-- |+...|-.++.+|.|++..+++...++++|+.
T Consensus 330 ~l~t~g~LaigNfaR~D-----~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvt 404 (604)
T KOG4500|consen 330 NLITMGSLAIGNFARRD-----DICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVT 404 (604)
T ss_pred hHHHHHHHHHHhhhccc-----hHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchH
Confidence 99999999999999654 789999999999999998653 34446777999999999999999999999876
Q ss_pred hhh
Q 037612 623 TVL 625 (663)
Q Consensus 623 ~~L 625 (663)
...
T Consensus 405 eaI 407 (604)
T KOG4500|consen 405 EAI 407 (604)
T ss_pred HHH
Confidence 654
No 27
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=98.89 E-value=1.5e-07 Score=112.13 Aligned_cols=337 Identities=14% Similarity=0.137 Sum_probs=231.6
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC---ChHHHHHHHHHHHHhcC-CCcchHHHHHcCchHH
Q 037612 159 GSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEG---KPEGQENAARAIGLLGR-DPESVEHMIHSGVCLV 234 (663)
Q Consensus 159 G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg---~~~~q~~Aa~AL~nLs~-~~~~~~~iv~aGaIp~ 234 (663)
-+...+++.++.++.++.. ++........|.+|-||++|--. +.+.++.|-.||.||-. +++.++.=-+.-+++.
T Consensus 206 l~t~D~ee~ar~fLemSss-~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~l 284 (2195)
T KOG2122|consen 206 LGTDDEEEMARTFLEMSSS-PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHL 284 (2195)
T ss_pred cccCCHHHHHHHHHHhccC-chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHH
Confidence 3446778888999999875 66677888999999999999744 35788899999999995 5555544444445555
Q ss_pred HHH----------hhccCC-------hhHHH-HHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhh
Q 037612 235 FAK----------ILKEGP-------MKVQA-VVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVS 296 (663)
Q Consensus 235 Lv~----------lL~s~~-------~~vq~-~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~ 296 (663)
|=+ .|..+. .+-+- .|..+|..++= ++|+|..+-+.|++..+-+||... |
T Consensus 285 LeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vD----h------- 352 (2195)
T KOG2122|consen 285 LEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVD----H------- 352 (2195)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHH----H-------
Confidence 442 232221 12233 56677777774 689999999999999999988422 1
Q ss_pred hhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCcc
Q 037612 297 KATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTD 376 (663)
Q Consensus 297 ~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~ 376 (663)
.+| + |.
T Consensus 353 ---~mh----------------g------------------p~------------------------------------- 358 (2195)
T KOG2122|consen 353 ---EMH----------------G------------------PE------------------------------------- 358 (2195)
T ss_pred ---Hhc----------------C------------------CC-------------------------------------
Confidence 000 0 00
Q ss_pred ccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhh-hccHHHHHHHhh
Q 037612 377 VKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITE-SRALLCFAVLLE 455 (663)
Q Consensus 377 ~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~e-sgal~~L~~LL~ 455 (663)
..|+.- ..++..|+.||-||-+|...|-...-- .|-+.|++.-|.
T Consensus 359 ---------------------------------tnd~~~-~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~ 404 (2195)
T KOG2122|consen 359 ---------------------------------TNDGEC-NALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLI 404 (2195)
T ss_pred ---------------------------------CCcHHH-HHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHh
Confidence 001111 247889999999999998887665544 555669999999
Q ss_pred cCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHH-hhhcCcchhhHHHHHHHHhhh-------ch
Q 037612 456 KGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRI-IEKADSDLLIPCIKAVGNLAR-------TF 527 (663)
Q Consensus 456 ~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~l-l~~~~~~l~~~a~~aLg~La~-------~~ 527 (663)
+..++++.--|..|.|++=-|..|-. .+|.+ -+-|.-|... ++...+.-+.....|||||+. .|
T Consensus 405 s~peeL~QV~AsvLRNLSWRAD~nmK---kvLrE-----~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~i 476 (2195)
T KOG2122|consen 405 SAPEELLQVYASVLRNLSWRADSNMK---KVLRE-----TGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEI 476 (2195)
T ss_pred cChHHHHHHHHHHHHhccccccccHH---HHHHh-----hhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhh
Confidence 99989999899999999755544411 12222 1234444433 333334455677889999976 35
Q ss_pred hhHhhccHHHHHHhcc----cCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHH
Q 037612 528 KATETRMIVPLVKLLD----EREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLL 603 (663)
Q Consensus 528 ~~~e~~~I~pLV~LL~----~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L 603 (663)
|+++ |.+..||.+|. ...-.+-+.|..-|.|..+-- ..+.+|...+-+.+++.-|.+.|++.+-.++-+++.+|
T Consensus 477 CaVD-GALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~I-At~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTL 554 (2195)
T KOG2122|consen 477 CAVD-GALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLI-ATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTL 554 (2195)
T ss_pred hccc-chHHHHHhhccccCCcchhhhhhcCccHHHHHHhHh-hccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhh
Confidence 5444 78999999994 334445555666665543110 01346666788999999999999999887888899999
Q ss_pred HHHh-cCCCChHHHHhccchhhhh
Q 037612 604 CYIA-LHVPDSEDLAQAEVLTVLE 626 (663)
Q Consensus 604 ~~la-~~~~~~~~i~~~~vl~~L~ 626 (663)
|||. .+..+++.|-+.|.++.|.
T Consensus 555 WNLSAR~p~DQq~LwD~gAv~mLr 578 (2195)
T KOG2122|consen 555 WNLSARSPEDQQMLWDDGAVPMLR 578 (2195)
T ss_pred hhhhcCCHHHHHHHHhcccHHHHH
Confidence 9996 5556678899999999986
No 28
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=98.84 E-value=6.8e-08 Score=114.88 Aligned_cols=272 Identities=15% Similarity=0.181 Sum_probs=190.0
Q ss_pred HHHHHHHH-HHHHhhcCChhhHHHHHhcCChHHHHHhhccC------------ChHHHHHHHHHHHHhc-CCCcchHHHH
Q 037612 162 EHKSDAAA-SLVSLARDNDRYGKLIIEEGGVGPLLKLVKEG------------KPEGQENAARAIGLLG-RDPESVEHMI 227 (663)
Q Consensus 162 e~k~~AA~-~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg------------~~~~q~~Aa~AL~nLs-~~~~~~~~iv 227 (663)
+-+..||. +|.-++ -+++||...-|.|++..+-+||..+ ...+++.|..||.||. ++-.||..+-
T Consensus 312 ~H~lcaA~~~lMK~S-FDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LC 390 (2195)
T KOG2122|consen 312 EHQLCAALCTLMKLS-FDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLC 390 (2195)
T ss_pred chhhHHHHHHHHHhh-ccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 44554444 444444 5699999999999999888887432 1357899999999999 5667888777
Q ss_pred -HcCchHHHHHhhccCChhHHHHHHHHHHHHhcC-ChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHH
Q 037612 228 -HSGVCLVFAKILKEGPMKVQAVVAWAVSELAGN-YPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVV 305 (663)
Q Consensus 228 -~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~-~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv 305 (663)
..|.+..+|..|.+..++++...|..|.||+=. +.+....+.+.|-+-.|+.--
T Consensus 391 s~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~a------------------------ 446 (2195)
T KOG2122|consen 391 SQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACA------------------------ 446 (2195)
T ss_pred hhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHH------------------------
Confidence 589999999999999889999999999999832 335666666666555443311
Q ss_pred HhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcc
Q 037612 306 VASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNN 385 (663)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~ 385 (663)
++. .
T Consensus 447 ---------------------------------------------------l~~-------------------~------ 450 (2195)
T KOG2122|consen 447 ---------------------------------------------------LRN-------------------K------ 450 (2195)
T ss_pred ---------------------------------------------------HHh-------------------c------
Confidence 000 0
Q ss_pred ccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhh-hccHHHHHHHhhcCCh----h
Q 037612 386 VKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITE-SRALLCFAVLLEKGPE----D 460 (663)
Q Consensus 386 ~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~e-sgal~~L~~LL~~~~~----~ 460 (663)
+|+ + ...-.-|||||+.+...|-..|-. .|+|..|+.+|..... .
T Consensus 451 ----------------------kEs-T-------LKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLa 500 (2195)
T KOG2122|consen 451 ----------------------KES-T-------LKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLA 500 (2195)
T ss_pred ----------------------ccc-h-------HHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhh
Confidence 000 0 112346999999999888888766 7888888888875431 2
Q ss_pred HHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHH
Q 037612 461 VQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVK 540 (663)
Q Consensus 461 vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~ 540 (663)
+-+++-.-|.|.+..--.+.+.|+ ..++.+.|.-|++
T Consensus 501 IIEsaGGILRNVSS~IAt~E~yRQ-------------------------------------------ILR~~NCLq~LLQ 537 (2195)
T KOG2122|consen 501 IIESAGGILRNVSSLIATCEDYRQ-------------------------------------------ILRRHNCLQTLLQ 537 (2195)
T ss_pred hhhcCccHHHHHHhHhhccchHHH-------------------------------------------HHHHhhHHHHHHH
Confidence 333333333333211111111111 1124567888999
Q ss_pred hcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCC
Q 037612 541 LLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVP 611 (663)
Q Consensus 541 LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~ 611 (663)
+|.+...-|--+++.+|+||..- +++.+.+|.+.|++..|-+|+.+...++-+-++.+|-|+..+-|
T Consensus 538 ~LKS~SLTiVSNaCGTLWNLSAR----~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 538 HLKSHSLTIVSNACGTLWNLSAR----SPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred HhhhcceEEeecchhhhhhhhcC----CHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 99988888889999999999643 36788999999999999999999988776778888999865553
No 29
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.59 E-value=1.7e-06 Score=98.14 Aligned_cols=336 Identities=20% Similarity=0.235 Sum_probs=211.0
Q ss_pred hhhHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHh-cCCC
Q 037612 142 EPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLL-GRDP 220 (663)
Q Consensus 142 ~~i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nL-s~~~ 220 (663)
+-+..++..+...|.+ .++..|..|+.++..+...++. .+-.. .++.|.++|.+.++.++..|..++..+ ..++
T Consensus 110 ~~~~~l~~~v~~ll~~-~~~~VRk~A~~~l~~i~~~~p~---~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~ 184 (526)
T PF01602_consen 110 EMAEPLIPDVIKLLSD-PSPYVRKKAALALLKIYRKDPD---LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDD 184 (526)
T ss_dssp HHHHHHHHHHHHHHHS-SSHHHHHHHHHHHHHHHHHCHC---CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHH
T ss_pred chhhHHHHHHHHHhcC-CchHHHHHHHHHHHHHhccCHH---HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcc
Confidence 3344455666777888 8999999999999998876443 22233 689999999888899999999999999 1111
Q ss_pred cchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhh
Q 037612 221 ESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATS 300 (663)
Q Consensus 221 ~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~s 300 (663)
... . .-...++.|.+++...++-.|......|..++...+..... ...++.+..+|++. ..++.- ..
T Consensus 185 ~~~-~-~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~------~~~V~~--e~ 251 (526)
T PF01602_consen 185 SYK-S-LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSS------SPSVVY--EA 251 (526)
T ss_dssp HHT-T-HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHH------HHHHHH--HH
T ss_pred hhh-h-hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhcc------ccHHHH--HH
Confidence 111 1 11223444555556788888888989898888755554422 34677888888632 122210 01
Q ss_pred HHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCcccccc
Q 037612 301 IHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSN 380 (663)
Q Consensus 301 l~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~ 380 (663)
++.+...... . .+++...-
T Consensus 252 ~~~i~~l~~~----------~---------------------------~~~~~~~~------------------------ 270 (526)
T PF01602_consen 252 IRLIIKLSPS----------P---------------------------ELLQKAIN------------------------ 270 (526)
T ss_dssp HHHHHHHSSS----------H---------------------------HHHHHHHH------------------------
T ss_pred HHHHHHhhcc----------h---------------------------HHHHhhHH------------------------
Confidence 1221111000 0 00000000
Q ss_pred CCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChh
Q 037612 381 GQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPED 460 (663)
Q Consensus 381 g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~ 460 (663)
++...+. ..|+. ++-.+..+|..++..+ ...+. ..-..+..+....+..
T Consensus 271 ------------~L~~lL~----------s~~~n----vr~~~L~~L~~l~~~~---~~~v~--~~~~~~~~l~~~~d~~ 319 (526)
T PF01602_consen 271 ------------PLIKLLS----------SSDPN----VRYIALDSLSQLAQSN---PPAVF--NQSLILFFLLYDDDPS 319 (526)
T ss_dssp ------------HHHHHHT----------SSSHH----HHHHHHHHHHHHCCHC---HHHHG--THHHHHHHHHCSSSHH
T ss_pred ------------HHHHHhh----------cccch----hehhHHHHHHHhhccc---chhhh--hhhhhhheecCCCChh
Confidence 1111111 12443 5888999999998865 22222 2222333444478889
Q ss_pred HHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhh-hcCcchhhHHHHHHHHhhhchhhHhhccHHHHH
Q 037612 461 VQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIE-KADSDLLIPCIKAVGNLARTFKATETRMIVPLV 539 (663)
Q Consensus 461 vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~-~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV 539 (663)
++..+...|+.++... | .+.+++.|...+. ..+++++..++.+|+.++..+.......+..++
T Consensus 320 Ir~~~l~lL~~l~~~~--n--------------~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~ 383 (526)
T PF01602_consen 320 IRKKALDLLYKLANES--N--------------VKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLL 383 (526)
T ss_dssp HHHHHHHHHHHH--HH--H--------------HHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHH
T ss_pred HHHHHHHHHhhccccc--c--------------hhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHH
Confidence 9999999999886321 2 1347788888884 447789999999999999998766667899999
Q ss_pred HhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhc-CChhHHHHHHHHHHHHhcCCCC
Q 037612 540 KLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYF-GEQIVQLSALVLLCYIALHVPD 612 (663)
Q Consensus 540 ~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~-~~~~~q~~Al~~L~~la~~~~~ 612 (663)
++|......+..++...+.++.... ++....+ ++.|+.++.. .++.+...++|.++-.+...++
T Consensus 384 ~ll~~~~~~~~~~~~~~i~~ll~~~----~~~~~~~-----l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~ 448 (526)
T PF01602_consen 384 KLLEISGDYVSNEIINVIRDLLSNN----PELREKI-----LKKLIELLEDISSPEALAAAIWILGEYGELIEN 448 (526)
T ss_dssp HHHHCTGGGCHCHHHHHHHHHHHHS----TTTHHHH-----HHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT
T ss_pred HhhhhccccccchHHHHHHHHhhcC----hhhhHHH-----HHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc
Confidence 9998887888889999998887442 2222332 7788888775 4555666688888766555554
No 30
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.54 E-value=2.2e-05 Score=89.13 Aligned_cols=117 Identities=15% Similarity=0.087 Sum_probs=84.3
Q ss_pred HHHHHhccCC--CHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHH
Q 037612 150 EQVAILYTAG--SLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMI 227 (663)
Q Consensus 150 ~li~~L~~~G--~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv 227 (663)
++...+.. . +.+.|.++...|..+...+... .-+.+..++++.+.+...++-+--++..+...+.....+
T Consensus 8 el~~~~~~-~~~~~~~~~~~l~kli~~~~~G~~~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l- 79 (526)
T PF01602_consen 8 ELAKILNS-FKIDISKKKEALKKLIYLMMLGYDI------SFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL- 79 (526)
T ss_dssp HHHHHHHC-SSTHHHHHHHHHHHHHHHHHTT---------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH-
T ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHHHHHcCCCC------chHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH-
Confidence 34455556 6 7778888888888876543321 268999999999888999998888888888654443333
Q ss_pred HcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccC
Q 037612 228 HSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFE 284 (663)
Q Consensus 228 ~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sg 284 (663)
++..|.+=|.++++.++..|..+|++++ +++.... .++.+..+|.+.
T Consensus 80 ---~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~ 126 (526)
T PF01602_consen 80 ---IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDP 126 (526)
T ss_dssp ---HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSS
T ss_pred ---HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCC
Confidence 7788888899999999999999999998 3454433 346666666543
No 31
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.47 E-value=6.3e-07 Score=83.14 Aligned_cols=133 Identities=14% Similarity=0.027 Sum_probs=115.9
Q ss_pred hHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcch
Q 037612 144 ILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESV 223 (663)
Q Consensus 144 i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~ 223 (663)
-+.++..||.-.+..-+.|.|++-.+.|.|.|-+ +-|+..+.+..++..+|..|.+.+....+.+..+|+|+|.++.|+
T Consensus 14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~ 92 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNA 92 (173)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHH
Confidence 3567788888888745889999999999999986 889999999999999999999999999999999999999999999
Q ss_pred HHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHh
Q 037612 224 EHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHL 281 (663)
Q Consensus 224 ~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL 281 (663)
..|++++++|..+..|+++...+.-.++.++..|+-..-..|+.+.. |+.|..+
T Consensus 93 ~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~----p~Vv~~v 146 (173)
T KOG4646|consen 93 KFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS----PAVVRTV 146 (173)
T ss_pred HHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc----HHHHHHH
Confidence 99999999999999999999888889999999998655556666654 4444444
No 32
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.45 E-value=2.1e-07 Score=69.13 Aligned_cols=41 Identities=41% Similarity=0.633 Sum_probs=38.6
Q ss_pred ChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC
Q 037612 178 NDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR 218 (663)
Q Consensus 178 ~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~ 218 (663)
++++++.|++.|+||+|++||+++++.+|++|+|||+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 47899999999999999999999999999999999999973
No 33
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.6e-05 Score=84.75 Aligned_cols=126 Identities=33% Similarity=0.374 Sum_probs=114.4
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC-CCcchHHHHHcCchHHHHH
Q 037612 159 GSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR-DPESVEHMIHSGVCLVFAK 237 (663)
Q Consensus 159 G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~-~~~~~~~iv~aGaIp~Lv~ 237 (663)
-+.+.|+.|...|..+..+ -.|..-++..||.+||+.+|++++..+++.|+|+|+..+. +|.....+++.|+.+.|+.
T Consensus 95 ~~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred CCHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 4889999999999999854 6788999999999999999999999999999999999995 7999999999999999999
Q ss_pred hhcc-CChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCc
Q 037612 238 ILKE-GPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFET 285 (663)
Q Consensus 238 lL~s-~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt 285 (663)
.|.+ ++..++..|-.|++.|-.+++..++.|...++...|...|.+++
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~ 222 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNN 222 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCC
Confidence 9976 45678899999999999999999999999999999999887653
No 34
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=6.5e-05 Score=86.76 Aligned_cols=132 Identities=16% Similarity=0.102 Sum_probs=101.8
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhc-CChhhHHHHHhcCChHHHHHhhccC-ChHHHHHHHHHHHHhc-CCCcchHH
Q 037612 149 WEQVAILYTAGSLEHKSDAAASLVSLAR-DNDRYGKLIIEEGGVGPLLKLVKEG-KPEGQENAARAIGLLG-RDPESVEH 225 (663)
Q Consensus 149 ~~li~~L~~~G~~e~k~~AA~~L~~La~-~~~~~~~~Ive~G~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs-~~~~~~~~ 225 (663)
..|+.-|+..++...+.+|+..|..+.. .|++.-..+--.-.||.||.||+.. +.+++-.|++||++|+ .-|.....
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~ 249 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAI 249 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhe
Confidence 4456667763466666788777766433 3343222222234699999999966 5999999999999999 48999999
Q ss_pred HHHcCchHHHHHhhcc-CChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhcc
Q 037612 226 MIHSGVCLVFAKILKE-GPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAF 283 (663)
Q Consensus 226 iv~aGaIp~Lv~lL~s-~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~s 283 (663)
+|++|+||.|++-|.. .-++|-+++..||-.|+..++ .++.+.|+|-..+..|++
T Consensus 250 vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDF 305 (1051)
T KOG0168|consen 250 VVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDF 305 (1051)
T ss_pred eecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHH
Confidence 9999999999988866 568999999999999997543 457799999988888864
No 35
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.00012 Score=80.16 Aligned_cols=133 Identities=19% Similarity=0.153 Sum_probs=107.4
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHH
Q 037612 148 IWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMI 227 (663)
Q Consensus 148 v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv 227 (663)
|.-||..|.. .+.+.-.--..-|--|+-. ++|+....+.|.|..|++|.....++.......-|+|||-+...+..||
T Consensus 306 V~mLVKaLdr-~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv 383 (791)
T KOG1222|consen 306 VAMLVKALDR-SNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMV 383 (791)
T ss_pred HHHHHHHHcc-cchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHh
Confidence 3345666666 5544444444445555544 6689999999999999999999999999999999999999999999999
Q ss_pred HcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCc
Q 037612 228 HSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFET 285 (663)
Q Consensus 228 ~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt 285 (663)
..|-+|.|+.+|.+.+- ...|...|..++. ++..+..++....|+.|...+-+|+
T Consensus 384 ~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~-dD~~K~MfayTdci~~lmk~v~~~~ 438 (791)
T KOG1222|consen 384 NGGLLPHLASLLDSDTK--HGIALNMLYHLSC-DDDAKAMFAYTDCIKLLMKDVLSGT 438 (791)
T ss_pred hccchHHHHHHhCCccc--chhhhhhhhhhcc-CcHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999987642 3567788888887 4689999999999999998776665
No 36
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.30 E-value=6.5e-07 Score=66.51 Aligned_cols=41 Identities=29% Similarity=0.494 Sum_probs=38.5
Q ss_pred CCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhc
Q 037612 219 DPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAG 259 (663)
Q Consensus 219 ~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~ 259 (663)
+++++..+++.|+||+|+++|+++++++++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999999999999999973
No 37
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.28 E-value=0.00023 Score=78.94 Aligned_cols=131 Identities=15% Similarity=0.014 Sum_probs=99.3
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC-ChHHHHHHHHHHHHhcCCCcchHHHHHcC
Q 037612 152 VAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEG-KPEGQENAARAIGLLGRDPESVEHMIHSG 230 (663)
Q Consensus 152 i~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~~~~~~~~iv~aG 230 (663)
+..|+. ++.-....|+..|..+...+..+.......-...-|...|+++ +...+.-|+.+|..|...++.|..+.+.+
T Consensus 107 l~lL~~-~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~ 185 (429)
T cd00256 107 FNLLNR-QDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLAD 185 (429)
T ss_pred HHHHcC-CchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHcc
Confidence 557777 8888888999988888764332211111111234566677765 47889999999999999999999999999
Q ss_pred chHHHHHhhccC--ChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccC
Q 037612 231 VCLVFAKILKEG--PMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFE 284 (663)
Q Consensus 231 aIp~Lv~lL~s~--~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sg 284 (663)
++++|+.+|+.. ...++-++.-++.-|+= +++......+.+.|+.|+++++..
T Consensus 186 ~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~l~~i~k~s 240 (429)
T cd00256 186 GVPTLVKLLSNATLGFQLQYQSIFCIWLLTF-NPHAAEVLKRLSLIQDLSDILKES 240 (429)
T ss_pred CHHHHHHHHhhccccHHHHHHHHHHHHHHhc-cHHHHHhhccccHHHHHHHHHHhh
Confidence 999999999763 45778889988988885 445666777889999999999754
No 38
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.00031 Score=83.98 Aligned_cols=367 Identities=16% Similarity=0.145 Sum_probs=211.6
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChH----HHHHhhccCChHHHHHHHHHHHHhcCCC-c
Q 037612 147 LIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVG----PLLKLVKEGKPEGQENAARAIGLLGRDP-E 221 (663)
Q Consensus 147 ~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip----~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~-~ 221 (663)
++.+++...++ ++...|+-|...|.++...-. +. ..+-++ -|.+.+..++..++..|++|+...+... .
T Consensus 119 ll~~L~q~~~S-~~~~~rE~al~il~s~~~~~~-~~----~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~ 192 (1075)
T KOG2171|consen 119 LLQFLFQSTKS-PNPSLRESALLILSSLPETFG-NT----LQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLEN 192 (1075)
T ss_pred HHHHHHHHhcC-CCcchhHHHHHHHHhhhhhhc-cc----cchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhcc
Confidence 46667888999 999999999999999865311 11 123334 4444555555559999999999999533 3
Q ss_pred chHHHHH-cCchHHHHHhhc----cCChhHHHHHHHHHHHHhcCChhHHH-HHHhCCcHHHHHHHhccCccchhhhHHHh
Q 037612 222 SVEHMIH-SGVCLVFAKILK----EGPMKVQAVVAWAVSELAGNYPKCQD-LFAQHNIIRLLVGHLAFETVQEHSKYAIV 295 (663)
Q Consensus 222 ~~~~iv~-aGaIp~Lv~lL~----s~~~~vq~~Aa~aL~nLA~~~~~~r~-~i~~~g~I~~LV~LL~sgt~~~~s~~~v~ 295 (663)
++...-. .--+|.++.+|. .++.+.-..+-.+|-.|+...|..-. .+. .+|..-.++.++....+..+.
T Consensus 193 ~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~--~ii~~~l~Ia~n~~l~~~~R~--- 267 (1075)
T KOG2171|consen 193 NKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS--QIIQFSLEIAKNKELENSIRH--- 267 (1075)
T ss_pred chHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH--HHHHHHHHHhhcccccHHHHH---
Confidence 4333333 335676777774 46666667788888888876655422 221 133333333332221111110
Q ss_pred hhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCc
Q 037612 296 SKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGT 375 (663)
Q Consensus 296 ~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~ 375 (663)
.+|.-++..... +|.+.. ..+.-.+.++...+.+.+ .+.....
T Consensus 268 ---~ALe~ivs~~e~---------------------Ap~~~k----~~~~~~~~lv~~~l~~mt---------e~~~D~e 310 (1075)
T KOG2171|consen 268 ---LALEFLVSLSEY---------------------APAMCK----KLALLGHTLVPVLLAMMT---------EEEDDDE 310 (1075)
T ss_pred ---HHHHHHHHHHHh---------------------hHHHhh----hchhhhccHHHHHHHhcC---------Ccccchh
Confidence 122211111100 000000 000011233333333331 0111122
Q ss_pred cccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhh
Q 037612 376 DVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLE 455 (663)
Q Consensus 376 ~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~ 455 (663)
|.+++-.++ -+.++| ...|.++|-.+|.+=.... +-.-.+..+..+|.
T Consensus 311 w~~~d~~de-----------------------d~~~~~------~~~A~~~lDrlA~~L~g~~---v~p~~~~~l~~~l~ 358 (1075)
T KOG2171|consen 311 WSNEDDLDE-----------------------DDEETP------YRAAEQALDRLALHLGGKQ---VLPPLFEALEAMLQ 358 (1075)
T ss_pred hcccccccc-----------------------ccccCc------HHHHHHHHHHHHhcCChhh---ehHHHHHHHHHHhc
Confidence 222222110 112334 5577888888887543322 22333446667888
Q ss_pred cCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhH-----
Q 037612 456 KGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKAT----- 530 (663)
Q Consensus 456 ~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~----- 530 (663)
+.+-.-+..+.+||+-|+.|.. +.-+.-+ -.+++-++..+.++.+.++..|+-|||-++++|...
T Consensus 359 S~~w~~R~AaL~Als~i~EGc~---~~m~~~l-------~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~ 428 (1075)
T KOG2171|consen 359 STEWKERHAALLALSVIAEGCS---DVMIGNL-------PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKH 428 (1075)
T ss_pred CCCHHHHHHHHHHHHHHHcccH---HHHHHHH-------HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHH
Confidence 9998999999999988876654 2222111 124555666777778999999999999999988752
Q ss_pred hhccHHHHHHhcc-cCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHH-----HHhcCChhHHHHHHHHHH
Q 037612 531 ETRMIVPLVKLLD-EREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQ-----LVYFGEQIVQLSALVLLC 604 (663)
Q Consensus 531 e~~~I~pLV~LL~-~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~-----LL~~~~~~~q~~Al~~L~ 604 (663)
..+++|.|+..|+ ..++.|+..|+-||.||...- .+.+++ .-++.|++ |+.++.+.+|+.++.++.
T Consensus 429 ~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~-------~~~~l~-pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIa 500 (1075)
T KOG2171|consen 429 HERLPPALIALLDSTQNVRVQAHAAAALVNFSEEC-------DKSILE-PYLDGLMEKKLLLLLQSSKPYVQEQAVTAIA 500 (1075)
T ss_pred HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhC-------cHHHHH-HHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 2468889999995 557799999999999996321 223332 22333333 455668888999999998
Q ss_pred HHhcCCC
Q 037612 605 YIALHVP 611 (663)
Q Consensus 605 ~la~~~~ 611 (663)
-.|.-.+
T Consensus 501 svA~AA~ 507 (1075)
T KOG2171|consen 501 SVADAAQ 507 (1075)
T ss_pred HHHHHHh
Confidence 7764443
No 39
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=0.00012 Score=78.28 Aligned_cols=144 Identities=15% Similarity=0.170 Sum_probs=122.5
Q ss_pred CChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHH
Q 037612 201 GKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGH 280 (663)
Q Consensus 201 g~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~L 280 (663)
-+++-++.|.--|..+..+-+|...++..|+..+++..|++.+..+++.|||.|+..+.++|..|..+.+.|+.+.|+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 35788888888888888888999999999999999999999999999999999999999999999999999999999988
Q ss_pred hccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcC
Q 037612 281 LAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVG 360 (663)
Q Consensus 281 L~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~ 360 (663)
|.+.+.
T Consensus 175 ls~~~~-------------------------------------------------------------------------- 180 (342)
T KOG2160|consen 175 LSSDDP-------------------------------------------------------------------------- 180 (342)
T ss_pred HccCCC--------------------------------------------------------------------------
Confidence 864310
Q ss_pred CCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHH
Q 037612 361 TKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRS 440 (663)
Q Consensus 361 ~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~ 440 (663)
...+..|..|+..|-+++..-+..
T Consensus 181 --------------------------------------------------------~~~r~kaL~AissLIRn~~~g~~~ 204 (342)
T KOG2160|consen 181 --------------------------------------------------------NTVRTKALFAISSLIRNNKPGQDE 204 (342)
T ss_pred --------------------------------------------------------chHHHHHHHHHHHHHhcCcHHHHH
Confidence 012566778999999999999999
Q ss_pred HhhhccHHHHHHHhhcCC--hhHHHHHHHHHHHHhh
Q 037612 441 ITESRALLCFAVLLEKGP--EDVQYNSAMALMEITA 474 (663)
Q Consensus 441 I~esgal~~L~~LL~~~~--~~vq~~aa~AL~~i~a 474 (663)
+....|..+|...|++++ ...|..++.-+..+..
T Consensus 205 fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 205 FLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred HHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 999999999999999954 4556677777766653
No 40
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.16 E-value=0.0016 Score=72.51 Aligned_cols=321 Identities=12% Similarity=0.104 Sum_probs=196.8
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhc-----CChHHHHHhhccCChHHHHHHHHHHHHhcCC-C
Q 037612 147 LIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEE-----GGVGPLLKLVKEGKPEGQENAARAIGLLGRD-P 220 (663)
Q Consensus 147 ~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~-----G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~-~ 220 (663)
++.-++.+|+.....+.......-+..|..+++.....+.+. ....|++++|..++..++..|...|..|... +
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~ 133 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGL 133 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCc
Confidence 444456666653566666666666666776665545555553 4678999999988889999999999999842 3
Q ss_pred cchHHHHHcCchHHHHHhhccC-ChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhh
Q 037612 221 ESVEHMIHSGVCLVFAKILKEG-PMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKAT 299 (663)
Q Consensus 221 ~~~~~iv~aGaIp~Lv~lL~s~-~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~ 299 (663)
.+.......-.+..|...|+++ +.+.+..++.+|..|.. .+++|..|.+.+++++|+.+|+..+..
T Consensus 134 ~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~~~------------ 200 (429)
T cd00256 134 AKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNATLG------------ 200 (429)
T ss_pred cccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhcccc------------
Confidence 2211111111334566666654 46778888899999986 579999999999999999999642100
Q ss_pred hHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccc
Q 037612 300 SIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKS 379 (663)
Q Consensus 300 sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~ 379 (663)
T Consensus 201 -------------------------------------------------------------------------------- 200 (429)
T cd00256 201 -------------------------------------------------------------------------------- 200 (429)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhc-CC
Q 037612 380 NGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEK-GP 458 (663)
Q Consensus 380 ~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~-~~ 458 (663)
.+++=.+..++|-|+... .......+.+.++.|+.+++. ..
T Consensus 201 -------------------------------------~Ql~Y~~ll~lWlLSF~~-~~~~~~~~~~~i~~l~~i~k~s~K 242 (429)
T cd00256 201 -------------------------------------FQLQYQSIFCIWLLTFNP-HAAEVLKRLSLIQDLSDILKESTK 242 (429)
T ss_pred -------------------------------------HHHHHHHHHHHHHHhccH-HHHHhhccccHHHHHHHHHHhhhh
Confidence 012333445667776632 333444556677777777774 35
Q ss_pred hhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhc--CcchhhHHHHHHHHh-hh------chh-
Q 037612 459 EDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKA--DSDLLIPCIKAVGNL-AR------TFK- 528 (663)
Q Consensus 459 ~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~--~~~l~~~a~~aLg~L-a~------~~~- 528 (663)
+.|-.-+..+|.|+...+... +-++. +.+ -+....+.+++..+... +|+-...-+..|... .. +|.
T Consensus 243 EKvvRv~l~~l~Nll~~~~~~-~~~~~-~~~--~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~ 318 (429)
T cd00256 243 EKVIRIVLAIFRNLISKRVDR-EVKKT-AAL--QMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDE 318 (429)
T ss_pred HHHHHHHHHHHHHHhhccccc-chhhh-HHH--HHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 667777778888876433211 00000 000 00010123444444433 232222222222111 11 111
Q ss_pred ------------------------------hHhhccHHHHHHhcc-cCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHH
Q 037612 529 ------------------------------ATETRMIVPLVKLLD-EREAEVSREASIALTKFACSDNYLHSDHSKAIIS 577 (663)
Q Consensus 529 ------------------------------~~e~~~I~pLV~LL~-~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~ 577 (663)
..+-.++.-|+++|+ +.++.+..-|+.=++.|+- .+|.....+-+
T Consensus 319 Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr----~~P~gr~i~~~ 394 (429)
T cd00256 319 YKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVR----HYPRGKDVVEQ 394 (429)
T ss_pred HHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHH----HCccHHHHHHH
Confidence 011136899999995 5566666668888888873 24555666777
Q ss_pred cCCHHHHHHHHhcCChhHHHHHHHHHHHH
Q 037612 578 AGGAKHLVQLVYFGEQIVQLSALVLLCYI 606 (663)
Q Consensus 578 ~ggi~~Lv~LL~~~~~~~q~~Al~~L~~l 606 (663)
.||=..+++|+.++++.++-+|+-++--+
T Consensus 395 lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl 423 (429)
T cd00256 395 LGGKQRVMRLLNHEDPNVRYEALLAVQKL 423 (429)
T ss_pred cCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 89988999999999999999999888655
No 41
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.14 E-value=0.00015 Score=79.17 Aligned_cols=275 Identities=21% Similarity=0.215 Sum_probs=186.2
Q ss_pred hHHHHHhcCChHHHHHhhccCCh--HHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhcc-CChhHHHHHHHHHHHH
Q 037612 181 YGKLIIEEGGVGPLLKLVKEGKP--EGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKE-GPMKVQAVVAWAVSEL 257 (663)
Q Consensus 181 ~~~~Ive~G~Ip~Lv~LL~sg~~--~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s-~~~~vq~~Aa~aL~nL 257 (663)
-.+.|...|++..|++++.+++. .++.+|++.|-.+.. .+|+..|+.-| ...++.+-+. .+++++..++..|.+|
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 46678888999999999999874 457888888877653 57888888877 5666555544 4678889999999999
Q ss_pred hcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCC
Q 037612 258 AGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPH 337 (663)
Q Consensus 258 A~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 337 (663)
=.++++.-..+++.|++...+.-.+
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~r------------------------------------------------------- 274 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCR------------------------------------------------------- 274 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecc-------------------------------------------------------
Confidence 8777665555555555332111000
Q ss_pred CCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHH
Q 037612 338 PMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKA 417 (663)
Q Consensus 338 p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~ 417 (663)
| .||.
T Consensus 275 ----------------------------------------------------------------------R--t~P~--- 279 (832)
T KOG3678|consen 275 ----------------------------------------------------------------------R--TDPA--- 279 (832)
T ss_pred ----------------------------------------------------------------------c--CCHH---
Confidence 0 1343
Q ss_pred HHHHHHHHHHHHHhc-CChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHh
Q 037612 418 YMKAMAARALWHLAK-GNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKA 496 (663)
Q Consensus 418 ~lk~~Aa~AL~~La~-gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~ 496 (663)
+...||.||+|++- |.-+.++.|++.++-.-|.-|--+.++-.+++||.|+.-|+.+-|-.++.||+. .-+
T Consensus 280 -lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~KE~E~~VrkS~-------Tla 351 (832)
T KOG3678|consen 280 -LLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATNKEVEREVRKSG-------TLA 351 (832)
T ss_pred -HHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhhhhhhHHHhhcc-------chh
Confidence 47788899998874 456778889999999888888888888899999999999988877778888751 234
Q ss_pred HHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhH-hhc---cHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhH
Q 037612 497 VVDQLFRIIEKADSDLLIPCIKAVGNLARTFKAT-ETR---MIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHS 572 (663)
Q Consensus 497 vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~-e~~---~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~ 572 (663)
.|++++..++.+ ..|++.... +.+ -+.-||-+|++.--+.+.-+++-|+--|.-.. -...-
T Consensus 352 LVEPlva~~DP~-------------~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs--~Q~K~ 416 (832)
T KOG3678|consen 352 LVEPLVASLDPG-------------RFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKS--LQGKT 416 (832)
T ss_pred hhhhhhhccCcc-------------hhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHH--hccch
Confidence 677776665432 233332221 112 37888888887766666666665544432211 01223
Q ss_pred HHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 037612 573 KAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHV 610 (663)
Q Consensus 573 ~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~ 610 (663)
+..-+-|+|..|-.+..+++...-.-|-.+|..+-..+
T Consensus 417 kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEEV 454 (832)
T KOG3678|consen 417 KVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEEV 454 (832)
T ss_pred hHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcccc
Confidence 56778899999999998887743333555665443333
No 42
>PTZ00429 beta-adaptin; Provisional
Probab=98.01 E-value=0.0096 Score=70.81 Aligned_cols=307 Identities=16% Similarity=0.164 Sum_probs=184.9
Q ss_pred hHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcch
Q 037612 144 ILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESV 223 (663)
Q Consensus 144 i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~ 223 (663)
....+..+..-|+. .++..|-.|.++|.++-. +... +-.++++.++|...++-+++.|+.|+..|-... .
T Consensus 103 alLaINtl~KDl~d-~Np~IRaLALRtLs~Ir~--~~i~-----e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~--p 172 (746)
T PTZ00429 103 ALLAVNTFLQDTTN-SSPVVRALAVRTMMCIRV--SSVL-----EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD--M 172 (746)
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHHHHHcCCc--HHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--c
Confidence 34455666777788 888999999888888743 2222 235788999998889999999999999997522 2
Q ss_pred HHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHH
Q 037612 224 EHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHA 303 (663)
Q Consensus 224 ~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~ 303 (663)
..+.+.|.++-|.++|.+.++.|+..|..+|..+...++..... ..+.+.-|+..|..-+ + | ....-|+.
T Consensus 173 elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l--~~~~~~~Ll~~L~e~~--E---W---~Qi~IL~l 242 (746)
T PTZ00429 173 QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIES--SNEWVNRLVYHLPECN--E---W---GQLYILEL 242 (746)
T ss_pred ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHH--HHHHHHHHHHHhhcCC--h---H---HHHHHHHH
Confidence 34557789999999999999999999999999998765543222 2334555666554322 1 1 11111121
Q ss_pred HHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCC
Q 037612 304 VVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQD 383 (663)
Q Consensus 304 lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~ 383 (663)
+.. .. |... .....++....
T Consensus 243 L~~-y~----------------------------P~~~---~e~~~il~~l~---------------------------- 262 (746)
T PTZ00429 243 LAA-QR----------------------------PSDK---ESAETLLTRVL---------------------------- 262 (746)
T ss_pred HHh-cC----------------------------CCCc---HHHHHHHHHHH----------------------------
Confidence 111 00 1000 00011110000
Q ss_pred ccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHH
Q 037612 384 NNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQY 463 (663)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~ 463 (663)
++ .. ...+. +.-.|++++.++............-.+.-.+|+.|+ ++++++|+
T Consensus 263 ---------~~------------Lq-~~N~A----VVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~-ss~~eiqy 315 (746)
T PTZ00429 263 ---------PR------------MS-HQNPA----VVMGAIKVVANLASRCSQELIERCTVRVNTALLTLS-RRDAETQY 315 (746)
T ss_pred ---------HH------------hc-CCCHH----HHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhh-CCCccHHH
Confidence 00 00 01222 466788888888753211111111122235677774 56778999
Q ss_pred HHHHHHHHHhhhhhccHHHHhh---hc--CCCCch------------------hHhHHHHHHHHhhhcCcchhhHHHHHH
Q 037612 464 NSAMALMEITAVAEKDAELRRS---AF--KPNAPA------------------CKAVVDQLFRIIEKADSDLLIPCIKAV 520 (663)
Q Consensus 464 ~aa~AL~~i~a~a~~~~~~rr~---a~--~~~~~a------------------~~~vv~qL~~ll~~~~~~l~~~a~~aL 520 (663)
-+...|..|.. ..+.+-.. .| +.+.|. +..+++.|..-+.+.|.+....+++||
T Consensus 316 vaLr~I~~i~~---~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAI 392 (746)
T PTZ00429 316 IVCKNIHALLV---IFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAI 392 (746)
T ss_pred HHHHHHHHHHH---HCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 88777765542 22222111 11 122221 122555666666666788999999999
Q ss_pred HHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcc
Q 037612 521 GNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFA 561 (663)
Q Consensus 521 g~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la 561 (663)
|.+|..+...-...|..|+++|+.+... ..+++.++.++.
T Consensus 393 g~lA~k~~~~a~~cV~~Ll~ll~~~~~~-v~e~i~vik~Il 432 (746)
T PTZ00429 393 ASLAIKVDSVAPDCANLLLQIVDRRPEL-LPQVVTAAKDIV 432 (746)
T ss_pred HHHHHhChHHHHHHHHHHHHHhcCCchh-HHHHHHHHHHHH
Confidence 9999998877778899999999776553 446777776663
No 43
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.94 E-value=0.0022 Score=71.32 Aligned_cols=142 Identities=15% Similarity=0.013 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHH
Q 037612 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVV 498 (663)
Q Consensus 419 lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv 498 (663)
+++.|+++|+.+-.. .+++.|...+.+.+++|+..|++++..+- . ...+
T Consensus 163 Vra~A~raLG~l~~~-----------~a~~~L~~al~d~~~~VR~aA~~al~~lG--~------------------~~A~ 211 (410)
T TIGR02270 163 VRAAALRALGELPRR-----------LSESTLRLYLRDSDPEVRFAALEAGLLAG--S------------------RLAW 211 (410)
T ss_pred HHHHHHHHHHhhccc-----------cchHHHHHHHcCCCHHHHHHHHHHHHHcC--C------------------HhHH
Confidence 578888888765542 35666778889999999999999986551 1 1234
Q ss_pred HHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHc
Q 037612 499 DQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISA 578 (663)
Q Consensus 499 ~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ 578 (663)
+.|..+....+..+......+++.. ...+++..|..++++.. ++..+++||+.+...
T Consensus 212 ~~l~~~~~~~g~~~~~~l~~~lal~------~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p--------------- 268 (410)
T TIGR02270 212 GVCRRFQVLEGGPHRQRLLVLLAVA------GGPDAQAWLRELLQAAA--TRREALRAVGLVGDV--------------- 268 (410)
T ss_pred HHHHHHHhccCccHHHHHHHHHHhC------CchhHHHHHHHHhcChh--hHHHHHHHHHHcCCc---------------
Confidence 5555544444433332222333322 12367899999997644 899999999988533
Q ss_pred CCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCChHHH
Q 037612 579 GGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSEDL 616 (663)
Q Consensus 579 ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~~~~i 616 (663)
..+++|+.++.... +...|..+++.|+.=.-..+.+
T Consensus 269 ~av~~L~~~l~d~~--~aR~A~eA~~~ItG~~l~~~~l 304 (410)
T TIGR02270 269 EAAPWCLEAMREPP--WARLAGEAFSLITGMDVALEEL 304 (410)
T ss_pred chHHHHHHHhcCcH--HHHHHHHHHHHhhCCCcchhhh
Confidence 27888988885333 5556888888886544443433
No 44
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.92 E-value=0.0032 Score=71.68 Aligned_cols=110 Identities=16% Similarity=0.073 Sum_probs=89.4
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCC--hHHHHHHHHHHHHhc-CCCcchHHHH
Q 037612 151 QVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGK--PEGQENAARAIGLLG-RDPESVEHMI 227 (663)
Q Consensus 151 li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~--~~~q~~Aa~AL~nLs-~~~~~~~~iv 227 (663)
.+.+|.. -+++....|..-.-|++-.++.++..+++.|++|.|..++...+ ++.+..-+..+..+. ++.+....+.
T Consensus 14 ~l~~L~~-~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL 92 (678)
T KOG1293|consen 14 LLYRLLH-LDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVL 92 (678)
T ss_pred HHHhhhc-CCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHH
Confidence 3567777 78888899988888888877888888999999999999998654 666644444444444 5788899999
Q ss_pred HcCchHHHHHhhccCC-hhHHHHHHHHHHHHhcCC
Q 037612 228 HSGVCLVFAKILKEGP-MKVQAVVAWAVSELAGNY 261 (663)
Q Consensus 228 ~aGaIp~Lv~lL~s~~-~~vq~~Aa~aL~nLA~~~ 261 (663)
+.+.++.|.++|.+.+ ..+.+...+.+.++-..+
T Consensus 93 ~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~ 127 (678)
T KOG1293|consen 93 RIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETS 127 (678)
T ss_pred HHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcc
Confidence 9999999999999888 788889999999997644
No 45
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.90 E-value=0.00028 Score=75.56 Aligned_cols=192 Identities=17% Similarity=0.143 Sum_probs=140.7
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHHHHh------cCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCch
Q 037612 159 GSLEHKSDAAASLVSLARDNDRYGKLIIE------EGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVC 232 (663)
Q Consensus 159 G~~e~k~~AA~~L~~La~~~~~~~~~Ive------~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaI 232 (663)
.+.+.......-+..|..+++...+.+.+ .....||++++.+++..++..|+..|..|......+..-...+.+
T Consensus 69 ~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l 148 (312)
T PF03224_consen 69 SNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEAL 148 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHH
Confidence 67788888888888888887766666655 226889999999999999999999999999755544444347788
Q ss_pred HHHHHhhcc----CChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhh
Q 037612 233 LVFAKILKE----GPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVAS 308 (663)
Q Consensus 233 p~Lv~lL~s----~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~ 308 (663)
+.+++.|++ .+.+++..++.+|.+|.. .+++|..+.+.|++++|+.+|+... .+
T Consensus 149 ~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~--~~------------------- 206 (312)
T PF03224_consen 149 PKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQA--TN------------------- 206 (312)
T ss_dssp HHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH--------------------------
T ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhc--cc-------------------
Confidence 999999875 345677899999999995 6899999999999999999985110 00
Q ss_pred cccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccc
Q 037612 309 NKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQ 388 (663)
Q Consensus 309 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~ 388 (663)
. +.
T Consensus 207 ~----------------------------------------------------------------------~~------- 209 (312)
T PF03224_consen 207 S----------------------------------------------------------------------NS------- 209 (312)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred C----------------------------------------------------------------------CC-------
Confidence 0 00
Q ss_pred cccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhc-CChhHHHHHHH
Q 037612 389 NHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEK-GPEDVQYNSAM 467 (663)
Q Consensus 389 ~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~-~~~~vq~~aa~ 467 (663)
...+++=.+..++|.|+. +......+...+.++.|+.+++. ..+.|-.-+.+
T Consensus 210 --------------------------~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la 262 (312)
T PF03224_consen 210 --------------------------SGIQLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLA 262 (312)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHH
T ss_pred --------------------------CchhHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHH
Confidence 003567778899999998 67888889999999999999985 46788889999
Q ss_pred HHHHHhhhh
Q 037612 468 ALMEITAVA 476 (663)
Q Consensus 468 AL~~i~a~a 476 (663)
++.|+...+
T Consensus 263 ~l~Nl~~~~ 271 (312)
T PF03224_consen 263 ILRNLLSKA 271 (312)
T ss_dssp HHHHTTSSS
T ss_pred HHHHHHhcc
Confidence 999986544
No 46
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.79 E-value=3.8e-05 Score=56.14 Aligned_cols=40 Identities=28% Similarity=0.430 Sum_probs=36.8
Q ss_pred hhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC
Q 037612 179 DRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR 218 (663)
Q Consensus 179 ~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~ 218 (663)
+.++..+++.|+||+|++||+++++.+++.|+|+|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 4488999999999999999999899999999999999973
No 47
>PTZ00429 beta-adaptin; Provisional
Probab=97.76 E-value=0.016 Score=68.89 Aligned_cols=295 Identities=13% Similarity=0.054 Sum_probs=187.9
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhh-cCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHH
Q 037612 148 IWEQVAILYTAGSLEHKSDAAASLVSLA-RDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHM 226 (663)
Q Consensus 148 v~~li~~L~~~G~~e~k~~AA~~L~~La-~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~i 226 (663)
+.++-..|++ ++...|.+|...+..+. .+.|. ....+-.++++.+.+...++-.--.|.+.+........+
T Consensus 34 ~~ELr~~L~s-~~~~~kk~alKkvIa~mt~G~Dv-------S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL 105 (746)
T PTZ00429 34 GAELQNDLNG-TDSYRKKAAVKRIIANMTMGRDV-------SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL 105 (746)
T ss_pred HHHHHHHHHC-CCHHHHHHHHHHHHHHHHCCCCc-------hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH
Confidence 3455677788 88888888887666554 43221 235777888898989999998888888887633332333
Q ss_pred HHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHH
Q 037612 227 IHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVV 306 (663)
Q Consensus 227 v~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~ 306 (663)
+|..|.+=|.++++.++..|..+|+++-. ++. ++.++.-++.+ +
T Consensus 106 ----aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i---------~e~l~~~lkk~--------------------L- 149 (746)
T PTZ00429 106 ----AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSV---------LEYTLEPLRRA--------------------V- 149 (746)
T ss_pred ----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHH---------HHHHHHHHHHH--------------------h-
Confidence 67888888999999999999888888753 222 22222222100 0
Q ss_pred hhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccc
Q 037612 307 ASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNV 386 (663)
Q Consensus 307 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~ 386 (663)
.
T Consensus 150 --~----------------------------------------------------------------------------- 150 (746)
T PTZ00429 150 --A----------------------------------------------------------------------------- 150 (746)
T ss_pred --c-----------------------------------------------------------------------------
Confidence 0
Q ss_pred cccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHH
Q 037612 387 KQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSA 466 (663)
Q Consensus 387 ~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa 466 (663)
-.+| +++..||-|+.++-..+++ .+.+.+-+..|..+|...++.|+.+|.
T Consensus 151 -----------------------D~~p----YVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl 200 (746)
T PTZ00429 151 -----------------------DPDP----YVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAA 200 (746)
T ss_pred -----------------------CCCH----HHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHH
Confidence 0122 3577888888888765543 234566677888999999999999999
Q ss_pred HHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCC
Q 037612 467 MALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDERE 546 (663)
Q Consensus 467 ~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~ 546 (663)
.+|++|....... +. ..+..+..|+..|..-++-.+......|......-...-..+|.-+...|++.+
T Consensus 201 ~aL~eI~~~~~~~--l~---------l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N 269 (746)
T PTZ00429 201 AIVCEVNDYGSEK--IE---------SSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQN 269 (746)
T ss_pred HHHHHHHHhCchh--hH---------HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999996322111 11 123345667777766666666666666533211111111357888888899999
Q ss_pred HHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCC
Q 037612 547 AEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVP 611 (663)
Q Consensus 547 ~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~ 611 (663)
+-|.-+|+.++.++...-+ ++..+.+. ..-.+||+.|+. +++.+|--++..+..++...+
T Consensus 270 ~AVVl~Aik~il~l~~~~~---~~~~~~~~-~rl~~pLv~L~s-s~~eiqyvaLr~I~~i~~~~P 329 (746)
T PTZ00429 270 PAVVMGAIKVVANLASRCS---QELIERCT-VRVNTALLTLSR-RDAETQYIVCKNIHALLVIFP 329 (746)
T ss_pred HHHHHHHHHHHHHhcCcCC---HHHHHHHH-HHHHHHHHHhhC-CCccHHHHHHHHHHHHHHHCH
Confidence 9999999999999974311 12122211 112267888854 455577777766655554443
No 48
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.0069 Score=69.98 Aligned_cols=118 Identities=14% Similarity=0.181 Sum_probs=94.6
Q ss_pred chhhHhHHHHHHH-HhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCC
Q 037612 141 NEPILCLIWEQVA-ILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRD 219 (663)
Q Consensus 141 ~~~i~~~v~~li~-~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~ 219 (663)
.|.|.+.||.+|. -+++ .+.+.|..|+.+++++....+..+..=+..+++|.+++++...+...+.-++|+|+.++.+
T Consensus 358 ~D~Iv~~Vl~Fiee~i~~-pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~ 436 (859)
T KOG1241|consen 358 GDDIVPHVLPFIEENIQN-PDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADF 436 (859)
T ss_pred cccchhhhHHHHHHhcCC-cchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhh
Confidence 7888889999998 8899 9999999999999999877666666556689999999999966788889999999999953
Q ss_pred -Ccc-hHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcC
Q 037612 220 -PES-VEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGN 260 (663)
Q Consensus 220 -~~~-~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~ 260 (663)
++- -...-..+.++.|++=|.+. |.+-.+++|++.+|+..
T Consensus 437 l~e~~~n~~~l~~~l~~l~~gL~De-Prva~N~CWAf~~Laea 478 (859)
T KOG1241|consen 437 LPEAIINQELLQSKLSALLEGLNDE-PRVASNVCWAFISLAEA 478 (859)
T ss_pred chhhcccHhhhhHHHHHHHHHhhhC-chHHHHHHHHHHHHHHH
Confidence 322 22233455666666666654 78899999999999953
No 49
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.73 E-value=0.00012 Score=78.38 Aligned_cols=140 Identities=23% Similarity=0.231 Sum_probs=105.0
Q ss_pred hhhHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhh------ccC-ChHHHHHHHHHHH
Q 037612 142 EPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLV------KEG-KPEGQENAARAIG 214 (663)
Q Consensus 142 ~~i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL------~sg-~~~~q~~Aa~AL~ 214 (663)
+.+..++.-+-..+++ .+.+...-|+.+|.+|.+. +.+|..+.+.|++++|+++| .+. ....|.++..+++
T Consensus 146 ~~l~~ll~~L~~~l~~-~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lW 223 (312)
T PF03224_consen 146 EALPKLLQWLSSQLSS-SDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLW 223 (312)
T ss_dssp HHHHHHHHHHH-TT-H-HHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcC-CCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHH
Confidence 3344444333334445 5556668889999999875 88999999999999999999 333 3789999999999
Q ss_pred HhcCCCcchHHHHHcCchHHHHHhhcc-CChhHHHHHHHHHHHHhcCChh-HHHHHHhCCcHHHHHHHhccC
Q 037612 215 LLGRDPESVEHMIHSGVCLVFAKILKE-GPMKVQAVVAWAVSELAGNYPK-CQDLFAQHNIIRLLVGHLAFE 284 (663)
Q Consensus 215 nLs~~~~~~~~iv~aGaIp~Lv~lL~s-~~~~vq~~Aa~aL~nLA~~~~~-~r~~i~~~g~I~~LV~LL~sg 284 (663)
.||-+++....+.+.+.||.|+++++. ..+.+-..+.+++.||....++ +...+...|+ ++++..|...
T Consensus 224 lLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~-l~~l~~L~~r 294 (312)
T PF03224_consen 224 LLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGL-LKTLQNLSER 294 (312)
T ss_dssp HHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-H-HHHHHHHHSS
T ss_pred HHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccH-HHHHHHHhcC
Confidence 999999999999999999999999976 5688999999999999976543 6666667666 5555656544
No 50
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.0018 Score=75.31 Aligned_cols=255 Identities=16% Similarity=0.152 Sum_probs=171.1
Q ss_pred hHHHHHhhccC-ChHHHHHHHHHHHHhc--CCCcchHHHHHcCchHHHHHhhccC-ChhHHHHHHHHHHHHhcCChhHHH
Q 037612 191 VGPLLKLVKEG-KPEGQENAARAIGLLG--RDPESVEHMIHSGVCLVFAKILKEG-PMKVQAVVAWAVSELAGNYPKCQD 266 (663)
Q Consensus 191 Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs--~~~~~~~~iv~aGaIp~Lv~lL~s~-~~~vq~~Aa~aL~nLA~~~~~~r~ 266 (663)
+..|+.=|... ++..|-.|+.=|+.+- ++.+.-.-+--.-.||.||.+|+.. ..+++-.|+.||.||+..-|..-.
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 44555555544 7888888888887655 3555554444566899999999874 589999999999999998899999
Q ss_pred HHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCcc
Q 037612 267 LFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQ 346 (663)
Q Consensus 267 ~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~ 346 (663)
.++++++||.|++=|.. | +
T Consensus 249 ~vV~~~aIPvl~~kL~~----------I-e-------------------------------------------------- 267 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLT----------I-E-------------------------------------------------- 267 (1051)
T ss_pred eeecccchHHHHHhhhh----------h-h--------------------------------------------------
Confidence 99999999999885521 0 0
Q ss_pred chhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHH
Q 037612 347 MHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARA 426 (663)
Q Consensus 347 ~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~A 426 (663)
+-| +-+.+..|
T Consensus 268 ---------------------------------------------------------------yiD------vAEQ~LqA 278 (1051)
T KOG0168|consen 268 ---------------------------------------------------------------YID------VAEQSLQA 278 (1051)
T ss_pred ---------------------------------------------------------------hhH------HHHHHHHH
Confidence 001 23445677
Q ss_pred HHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhh
Q 037612 427 LWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIE 506 (663)
Q Consensus 427 L~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~ 506 (663)
|-.+++-+ -+.|..+|+|...+..|+.-...+|..|.....|+|..-. -..|+. |+
T Consensus 279 LE~iSR~H---~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~------sd~f~~-------v~-------- 334 (1051)
T KOG0168|consen 279 LEKISRRH---PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR------SDEFHF-------VM-------- 334 (1051)
T ss_pred HHHHHhhc---cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CccchH-------HH--------
Confidence 88888754 3556889999988888888888999988888777763321 112332 11
Q ss_pred hcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHH
Q 037612 507 KADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQ 586 (663)
Q Consensus 507 ~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~ 586 (663)
..+|.|-.+|+..+..+-+.++.+++.++++- .+.++--..+...|=|.-..+
T Consensus 335 --------------------------ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f-~h~~~kLdql~s~dLi~~~~q 387 (1051)
T KOG0168|consen 335 --------------------------EALPLLTPLLSYQDKKPIESVCICLTRIADGF-QHGPDKLDQLCSHDLITNIQQ 387 (1051)
T ss_pred --------------------------HHHHHHHHHHhhccchhHHHHHHHHHHHHHhc-ccChHHHHHHhchhHHHHHHH
Confidence 25777778888888888888888888776442 122333446777777777777
Q ss_pred HHhcCCh----hHHHHHHHHHHHHhcCCCCh-HHHHhccchhhhh
Q 037612 587 LVYFGEQ----IVQLSALVLLCYIALHVPDS-EDLAQAEVLTVLE 626 (663)
Q Consensus 587 LL~~~~~----~~q~~Al~~L~~la~~~~~~-~~i~~~~vl~~L~ 626 (663)
||....+ .+..--+.+|.-++.+.+.. +.+.+-++-..|.
T Consensus 388 Llsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~ 432 (1051)
T KOG0168|consen 388 LLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLK 432 (1051)
T ss_pred HHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHH
Confidence 7765522 22333444555555665553 3344555444443
No 51
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.0089 Score=65.95 Aligned_cols=117 Identities=15% Similarity=0.057 Sum_probs=102.0
Q ss_pred HHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhH
Q 037612 167 AAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKV 246 (663)
Q Consensus 167 AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~v 246 (663)
|..-|.|||.+ -+.-....+...|.-||+.|+-.+.+.-.-...-|..||...+|+..|.+.|.|.-|+++..+.++++
T Consensus 283 a~ylLlNlAed-~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL 361 (791)
T KOG1222|consen 283 AVYLLLNLAED-ISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDL 361 (791)
T ss_pred HHHHHHHHhhh-hhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHH
Confidence 44567788864 44444556778899999999988888888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCc
Q 037612 247 QAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFET 285 (663)
Q Consensus 247 q~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt 285 (663)
.......|+||+= +...|..++..|.+|-|+.+|.+++
T Consensus 362 ~~~tl~LlfNlSF-D~glr~KMv~~GllP~l~~ll~~d~ 399 (791)
T KOG1222|consen 362 RKATLMLLFNLSF-DSGLRPKMVNGGLLPHLASLLDSDT 399 (791)
T ss_pred HHHHHHHhhhccc-cccccHHHhhccchHHHHHHhCCcc
Confidence 9999999999996 4578888889999999999999876
No 52
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.037 Score=64.40 Aligned_cols=131 Identities=21% Similarity=0.232 Sum_probs=98.6
Q ss_pred HHHHHHHHhccCC-CHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC--ChHHHHHHHHHHHHhcCCCc--
Q 037612 147 LIWEQVAILYTAG-SLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEG--KPEGQENAARAIGLLGRDPE-- 221 (663)
Q Consensus 147 ~v~~li~~L~~~G-~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg--~~~~q~~Aa~AL~nLs~~~~-- 221 (663)
.|-.|+.|+.+ . -.+.|++|+..|-.+++ +||..++ +-|.+||+..|+.+ +++.-..+.-++.++-.+++
T Consensus 23 TI~kLcDRves-sTL~eDRR~A~rgLKa~sr---kYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 23 TIEKLCDRVES-STLLEDRRDAVRGLKAFSR---KYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred HHHHHHHHHhh-ccchhhHHHHHHHHHHHHH---HHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 34556778877 5 47999999999999985 5888887 56799999999976 58999999999999997653
Q ss_pred -----ch----------HH-HHHcCchHHHHHhhccCChhHHHHHHHHHHHHhc-CChhHHHHHHh-CCcHHHHHHHhc
Q 037612 222 -----SV----------EH-MIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAG-NYPKCQDLFAQ-HNIIRLLVGHLA 282 (663)
Q Consensus 222 -----~~----------~~-iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~-~~~~~r~~i~~-~g~I~~LV~LL~ 282 (663)
.+ .. |-..+-|..|+..+..-+..|+-.+...|.+|-. ..++.|+.+.. .-+|..||.+|+
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence 22 11 3356778888888888888888888888777743 45677766543 456777777774
No 53
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.60 E-value=0.00027 Score=60.36 Aligned_cols=86 Identities=24% Similarity=0.366 Sum_probs=70.3
Q ss_pred HHHHHHHh-hcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhh
Q 037612 447 LLCFAVLL-EKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLAR 525 (663)
Q Consensus 447 l~~L~~LL-~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~ 525 (663)
|+.|.+.| +++++.+|..++++|.++. + ..+++.|.+++++.++.++..++.+||.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----~---------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-----D---------------PEAIPALIELLKDEDPMVRRAAARALGRIG- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----H---------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----C---------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-
Confidence 46788888 7888999999999987541 1 236788999999988999999999999884
Q ss_pred chhhHhhccHHHHHHhccc-CCHHHHHHHHHHHH
Q 037612 526 TFKATETRMIVPLVKLLDE-REAEVSREASIALT 558 (663)
Q Consensus 526 ~~~~~e~~~I~pLV~LL~~-~~~~v~~eAa~AL~ 558 (663)
....++.|+++|.+ .+..++.+|+.||+
T Consensus 60 -----~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -----DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -----HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 24589999999965 46667899999985
No 54
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.60 E-value=0.0048 Score=68.58 Aligned_cols=128 Identities=16% Similarity=0.095 Sum_probs=61.9
Q ss_pred HHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCC------------CC
Q 037612 500 QLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDN------------YL 567 (663)
Q Consensus 500 qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~------------~~ 567 (663)
.|..++++.++.+...++++||.|.. ...+|+|...+++.++.|+..|+++|..+...+- ..
T Consensus 151 ~L~~~L~d~d~~Vra~A~raLG~l~~------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l~~~~~~~g~~ 224 (410)
T TIGR02270 151 ALEAALTHEDALVRAAALRALGELPR------RLSESTLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVCRRFQVLEGGP 224 (410)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhcc------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHhccCcc
Confidence 44444555555555555555554432 2234555555555555555555555544421100 00
Q ss_pred ChhhHHHHHHc----CCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCChHHHHhccchhhhhhccccccccccCCcHHH
Q 037612 568 HSDHSKAIISA----GGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVLEWTSKQSHMTQDETVDPL 643 (663)
Q Consensus 568 ~~~~~~~Iv~~----ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~~~~i~~~~vl~~L~~~~~~~~~~q~~~~~~l 643 (663)
...-...+... ..++.|.+|++.+. ++..++.+|..+ + ....++.|. ..+.++.+..+
T Consensus 225 ~~~~l~~~lal~~~~~a~~~L~~ll~d~~--vr~~a~~AlG~l----g------~p~av~~L~------~~l~d~~~aR~ 286 (410)
T TIGR02270 225 HRQRLLVLLAVAGGPDAQAWLRELLQAAA--TRREALRAVGLV----G------DVEAAPWCL------EAMREPPWARL 286 (410)
T ss_pred HHHHHHHHHHhCCchhHHHHHHHHhcChh--hHHHHHHHHHHc----C------CcchHHHHH------HHhcCcHHHHH
Confidence 00000011111 24566777776543 677788888654 2 233455555 33334457777
Q ss_pred HHHHHHHH
Q 037612 644 LQDAKSRL 651 (663)
Q Consensus 644 ~~~a~~~l 651 (663)
+.++..++
T Consensus 287 A~eA~~~I 294 (410)
T TIGR02270 287 AGEAFSLI 294 (410)
T ss_pred HHHHHHHh
Confidence 77777665
No 55
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.60 E-value=0.00011 Score=53.71 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=36.7
Q ss_pred CcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHh
Q 037612 220 PESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELA 258 (663)
Q Consensus 220 ~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA 258 (663)
++++..+++.|+|++|+++|++++++++..++|+|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 458899999999999999999999999999999999997
No 56
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.51 E-value=0.00031 Score=59.96 Aligned_cols=85 Identities=22% Similarity=0.393 Sum_probs=67.3
Q ss_pred HHHHHHHh-hhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHH
Q 037612 498 VDQLFRII-EKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAII 576 (663)
Q Consensus 498 v~qL~~ll-~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv 576 (663)
++.|++.+ ++.++.++..++.+||.+. ....+|+|+++|++.++.|+.+|+++|+++..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG------DPEAIPALIELLKDEDPMVRRAAARALGRIGD-------------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------------
Confidence 46678878 6777899999999998543 23579999999999999999999999999842
Q ss_pred HcCCHHHHHHHHhcCC-hhHHHHHHHHH
Q 037612 577 SAGGAKHLVQLVYFGE-QIVQLSALVLL 603 (663)
Q Consensus 577 ~~ggi~~Lv~LL~~~~-~~~q~~Al~~L 603 (663)
...++.|++++...+ ..++..|+.+|
T Consensus 61 -~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 61 -PEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp -HHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 238899999998864 44577777776
No 57
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.016 Score=69.94 Aligned_cols=110 Identities=17% Similarity=0.155 Sum_probs=86.4
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCC-CcchHHHHHc
Q 037612 151 QVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRD-PESVEHMIHS 229 (663)
Q Consensus 151 li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~-~~~~~~iv~a 229 (663)
+=.+|++ .+...|..|..+|..++.+..+.-.-.. .-.++-.+..|..+++++|-.|..|++.+|.+ .....+-..+
T Consensus 353 l~~~l~S-~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e 430 (1075)
T KOG2171|consen 353 LEAMLQS-TEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHE 430 (1075)
T ss_pred HHHHhcC-CCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHH
Confidence 3457888 8999999999999999877654433322 23677778888888999999999999999975 4445555566
Q ss_pred CchHHHHHhhcc-CChhHHHHHHHHHHHHhcCCh
Q 037612 230 GVCLVFAKILKE-GPMKVQAVVAWAVSELAGNYP 262 (663)
Q Consensus 230 GaIp~Lv~lL~s-~~~~vq~~Aa~aL~nLA~~~~ 262 (663)
-.+|.|+..+.+ +.++|+..||.|+-|++...+
T Consensus 431 ~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~ 464 (1075)
T KOG2171|consen 431 RLPPALIALLDSTQNVRVQAHAAAALVNFSEECD 464 (1075)
T ss_pred hccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc
Confidence 678899999977 568999999999999997543
No 58
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.38 E-value=0.037 Score=59.40 Aligned_cols=226 Identities=25% Similarity=0.279 Sum_probs=162.1
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHH
Q 037612 148 IWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMI 227 (663)
Q Consensus 148 v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv 227 (663)
+..++..+.. .+...|..|+..|+.+.. .-.+|+|.++|.+.++.++..|+.+|+.+-.
T Consensus 45 ~~~~~~~l~~-~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------- 103 (335)
T COG1413 45 ADELLKLLED-EDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGD--------- 103 (335)
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC---------
Confidence 3444667777 788899999888666532 2369999999999999999999997776643
Q ss_pred HcCchHHHHHhhc-cCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHH
Q 037612 228 HSGVCLVFAKILK-EGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVV 306 (663)
Q Consensus 228 ~aGaIp~Lv~lL~-s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~ 306 (663)
.-++++|+++|. +++..++..++++|+.+-.. .++.+|+.++....... +.+
T Consensus 104 -~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~--------------a~~- 156 (335)
T COG1413 104 -PEAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGS--------------AAA- 156 (335)
T ss_pred -hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhh--------------hhh-
Confidence 237899999998 58889999999999998632 13788888886542000 000
Q ss_pred hhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccc
Q 037612 307 ASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNV 386 (663)
Q Consensus 307 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~ 386 (663)
+
T Consensus 157 -------------------------------------------------~------------------------------ 157 (335)
T COG1413 157 -------------------------------------------------A------------------------------ 157 (335)
T ss_pred -------------------------------------------------h------------------------------
Confidence 0
Q ss_pred cccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHH
Q 037612 387 KQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSA 466 (663)
Q Consensus 387 ~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa 466 (663)
.++.. ..++..++.+|+.+-. ..+++.+..+++.....++..++
T Consensus 158 ------------------------~~~~~-~~~r~~a~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa 201 (335)
T COG1413 158 ------------------------LDAAL-LDVRAAAAEALGELGD-----------PEAIPLLIELLEDEDADVRRAAA 201 (335)
T ss_pred ------------------------ccchH-HHHHHHHHHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHH
Confidence 00000 1357777888865443 34677889999999999999999
Q ss_pred HHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCC
Q 037612 467 MALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDERE 546 (663)
Q Consensus 467 ~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~ 546 (663)
.+|..+.... ...++.+...+...+..+...++.+||.+.. ...+.+|+..+.+.+
T Consensus 202 ~aL~~~~~~~------------------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~------~~~~~~l~~~l~~~~ 257 (335)
T COG1413 202 SALGQLGSEN------------------VEAADLLVKALSDESLEVRKAALLALGEIGD------EEAVDALAKALEDED 257 (335)
T ss_pred HHHHHhhcch------------------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc------chhHHHHHHHHhccc
Confidence 9998774321 1245667788887778888888888876542 356889999999999
Q ss_pred HHHHHHHHHHHHhc
Q 037612 547 AEVSREASIALTKF 560 (663)
Q Consensus 547 ~~v~~eAa~AL~~l 560 (663)
..+...+..++..+
T Consensus 258 ~~~~~~~~~~~~~~ 271 (335)
T COG1413 258 VILALLAAAALGAL 271 (335)
T ss_pred hHHHHHHHHHhccc
Confidence 98888888877633
No 59
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.11 Score=60.90 Aligned_cols=303 Identities=19% Similarity=0.211 Sum_probs=192.9
Q ss_pred CCCCcccchhhHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHH
Q 037612 134 GLPPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAI 213 (663)
Q Consensus 134 ~~p~ia~~~~i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL 213 (663)
.+..|.+.|-++.+.-+...+|+. .+.-.|..|+-++..+-+..++.. +-.+++.-++|.+.+..+--.+..-+
T Consensus 130 alg~i~s~EmardlapeVe~Ll~~-~~~~irKKA~Lca~r~irK~P~l~-----e~f~~~~~~lL~ek~hGVL~~~l~l~ 203 (866)
T KOG1062|consen 130 ALGNICSPEMARDLAPEVERLLQH-RDPYIRKKAALCAVRFIRKVPDLV-----EHFVIAFRKLLCEKHHGVLIAGLHLI 203 (866)
T ss_pred HhhccCCHHHhHHhhHHHHHHHhC-CCHHHHHHHHHHHHHHHHcCchHH-----HHhhHHHHHHHhhcCCceeeeHHHHH
Confidence 344567777777777776778888 899999999998888776544422 23477788888877766666677777
Q ss_pred HHhcC-CCcchHHHHHcCchHHHHHhhcc---------------CChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHH
Q 037612 214 GLLGR-DPESVEHMIHSGVCLVFAKILKE---------------GPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLL 277 (663)
Q Consensus 214 ~nLs~-~~~~~~~iv~aGaIp~Lv~lL~s---------------~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~L 277 (663)
+.|+. +++.-...-+ .++.||..|+. .+|=+|.+....|.-|-.++++.-+.+-. .|
T Consensus 204 ~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D-----iL 276 (866)
T KOG1062|consen 204 TELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND-----IL 276 (866)
T ss_pred HHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH-----HH
Confidence 77774 4544444433 77888888752 13456666666666666555555444321 11
Q ss_pred HHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhh
Q 037612 278 VGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAM 357 (663)
Q Consensus 278 V~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~ 357 (663)
-+.......-.+..++| ..+.|.+=|.+
T Consensus 277 aqvatntdsskN~GnAI----------------------------------------------------LYE~V~TI~~I 304 (866)
T KOG1062|consen 277 AQVATNTDSSKNAGNAI----------------------------------------------------LYECVRTIMDI 304 (866)
T ss_pred HHHHhcccccccchhHH----------------------------------------------------HHHHHHHHHhc
Confidence 11111100000000110 11122111111
Q ss_pred hcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhh
Q 037612 358 KVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPI 437 (663)
Q Consensus 358 ~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~ 437 (663)
. ++ ..++.-|+..|++|-.+.+.|
T Consensus 305 ~----------------------------------------------------~~----~~LrvlainiLgkFL~n~d~N 328 (866)
T KOG1062|consen 305 R----------------------------------------------------SN----SGLRVLAINILGKFLLNRDNN 328 (866)
T ss_pred c----------------------------------------------------CC----chHHHHHHHHHHHHhcCCccc
Confidence 1 01 236888999999999988888
Q ss_pred hHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcC-----CCCchhHhHHHHHHHHhhhcCcch
Q 037612 438 CRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFK-----PNAPACKAVVDQLFRIIEKADSDL 512 (663)
Q Consensus 438 ~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~-----~~~~a~~~vv~qL~~ll~~~~~~l 512 (663)
.+ --|+-.|.+++.....-||.+= +++.+| ...-++-+||.||. .|+.=.+..++.|+..+.+.++++
T Consensus 329 ir----YvaLn~L~r~V~~d~~avqrHr-~tIleC--L~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~d~~~ 401 (866)
T KOG1062|consen 329 IR----YVALNMLLRVVQQDPTAVQRHR-STILEC--LKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLESSDEDF 401 (866)
T ss_pred ee----eeehhhHHhhhcCCcHHHHHHH-HHHHHH--hcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccHHH
Confidence 54 4577788888887776666654 344333 33345666665543 444445668888999999999999
Q ss_pred hhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCC
Q 037612 513 LIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSD 564 (663)
Q Consensus 513 ~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~ 564 (663)
+..|+.-+..++..|.-....-|..+.+.|...-..|+..+...|..+..++
T Consensus 402 k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~ 453 (866)
T KOG1062|consen 402 KADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANA 453 (866)
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcC
Confidence 9999999999999998766667888888887777777777777776665433
No 60
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.11 E-value=0.00059 Score=53.62 Aligned_cols=55 Identities=24% Similarity=0.337 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHH
Q 037612 203 PEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSEL 257 (663)
Q Consensus 203 ~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nL 257 (663)
+.++..|+++|++++........-....++|.|+.+|++.+++|+..|+|+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4678999999999997665555556677999999999999999999999999976
No 61
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.10 E-value=0.041 Score=59.06 Aligned_cols=99 Identities=25% Similarity=0.298 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHH
Q 037612 460 DVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLV 539 (663)
Q Consensus 460 ~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV 539 (663)
.++..++.+|.++-. ...++.+...+...+..++..++.+|+.+...- ..+.+.++
T Consensus 164 ~~r~~a~~~l~~~~~--------------------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----~~~~~~l~ 219 (335)
T COG1413 164 DVRAAAAEALGELGD--------------------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN----VEAADLLV 219 (335)
T ss_pred HHHHHHHHHHHHcCC--------------------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----hhHHHHHH
Confidence 567777777765521 124567888898888889999999998876432 13568889
Q ss_pred HhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHH
Q 037612 540 KLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQL 597 (663)
Q Consensus 540 ~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~ 597 (663)
..++..+..++..++.+|+..-.. ..+.+|+..+...+.....
T Consensus 220 ~~~~~~~~~vr~~~~~~l~~~~~~---------------~~~~~l~~~l~~~~~~~~~ 262 (335)
T COG1413 220 KALSDESLEVRKAALLALGEIGDE---------------EAVDALAKALEDEDVILAL 262 (335)
T ss_pred HHhcCCCHHHHHHHHHHhcccCcc---------------hhHHHHHHHHhccchHHHH
Confidence 999999999999999999988422 2456667767666554433
No 62
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.98 E-value=0.18 Score=55.35 Aligned_cols=131 Identities=17% Similarity=0.079 Sum_probs=95.9
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcC-ChHHHHHhhccC-ChHHHHHHHHHHHHhcCCCcchHHHHHc
Q 037612 152 VAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEG-GVGPLLKLVKEG-KPEGQENAARAIGLLGRDPESVEHMIHS 229 (663)
Q Consensus 152 i~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G-~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~~~~~~~~iv~a 229 (663)
+.+|.. ++.-.-..+++.+.-++..... +..-.+-. -..-|-.++.++ ++...--|+++|..+...++.|-.++.+
T Consensus 120 l~ll~r-~d~~iv~~~~~Ils~la~~g~~-~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~a 197 (442)
T KOG2759|consen 120 LNLLNR-QDTFIVEMSFRILSKLACFGNC-KMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIA 197 (442)
T ss_pred HHHHhc-CChHHHHHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeec
Confidence 667777 7666666677777777654321 11000111 133455566664 5778888999999999999999999999
Q ss_pred CchHHHHHhhcc--CChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCc
Q 037612 230 GVCLVFAKILKE--GPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFET 285 (663)
Q Consensus 230 GaIp~Lv~lL~s--~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt 285 (663)
.++..++..|.+ ....+|-+..-++.-|+=+ |...+.+...+.|+.|+++++..+
T Consensus 198 dg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~~~ae~~~~~~li~~L~~Ivk~~~ 254 (442)
T KOG2759|consen 198 DGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-PHAAEKLKRFDLIQDLSDIVKEST 254 (442)
T ss_pred CcchhhHHHHhccCcchhHHHHHHHHHHHhhcC-HHHHHHHhhccHHHHHHHHHHHHH
Confidence 999999999943 3577888999999999864 555577788999999999998654
No 63
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.4 Score=56.33 Aligned_cols=267 Identities=17% Similarity=0.197 Sum_probs=170.3
Q ss_pred hHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC-CCcc
Q 037612 144 ILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR-DPES 222 (663)
Q Consensus 144 i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~-~~~~ 222 (663)
...++..+..-|++ ++.-+.--|..+|++++.. +-.| ...|-..+||+..++-+++.|+-|+..+=. .++.
T Consensus 105 llLltNslknDL~s-~nq~vVglAL~alg~i~s~-Emar------dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l 176 (866)
T KOG1062|consen 105 LLLLTNSLKNDLNS-SNQYVVGLALCALGNICSP-EMAR------DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL 176 (866)
T ss_pred HHHHHHHHHhhccC-CCeeehHHHHHHhhccCCH-HHhH------HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH
Confidence 33344555667777 7777778888899998752 3222 346777788888899999999999888874 4554
Q ss_pred hHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHH
Q 037612 223 VEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIH 302 (663)
Q Consensus 223 ~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~ 302 (663)
.+. .++...++|.+.+..|...+..-+..|+..+++.-..+.. .++-||..|+.=+
T Consensus 177 ~e~-----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~----------------- 232 (866)
T KOG1062|consen 177 VEH-----FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLT----------------- 232 (866)
T ss_pred HHH-----hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHh-----------------
Confidence 443 5778889998888788788888888888877777777766 7788887775210
Q ss_pred HHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCC
Q 037612 303 AVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQ 382 (663)
Q Consensus 303 ~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~ 382 (663)
. ... . .++...|+
T Consensus 233 ------~-~~y----s--------------------------------------------------------peydv~gi 245 (866)
T KOG1062|consen 233 ------N-SGY----S--------------------------------------------------------PEYDVHGI 245 (866)
T ss_pred ------c-CCC----C--------------------------------------------------------CccCccCC
Confidence 0 000 0 01111111
Q ss_pred CccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCC----
Q 037612 383 DNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGP---- 458 (663)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~---- 458 (663)
.||- +|.+..+-|.=|-+|+......+.+ -|.+..++.+
T Consensus 246 ----------------------------~dPF----LQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdsskN 288 (866)
T KOG1062|consen 246 ----------------------------SDPF----LQIRILRLLRILGQNDADASDLMND-----ILAQVATNTDSSKN 288 (866)
T ss_pred ----------------------------CchH----HHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhccccccc
Confidence 2553 3556666666555554444332221 2334443222
Q ss_pred --hhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHH
Q 037612 459 --EDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIV 536 (663)
Q Consensus 459 --~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~ 536 (663)
--+-|+|..+||.|- .++.+|- ..++-|=+++...|-.+++-+..+|.-+-..-...-.+-=.
T Consensus 289 ~GnAILYE~V~TI~~I~----~~~~Lrv-----------lainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~ 353 (866)
T KOG1062|consen 289 AGNAILYECVRTIMDIR----SNSGLRV-----------LAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRS 353 (866)
T ss_pred chhHHHHHHHHHHHhcc----CCchHHH-----------HHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHH
Confidence 278899999999883 3556664 35677778888888888888887777665533322112334
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhcc
Q 037612 537 PLVKLLDEREAEVSREASIALTKFA 561 (663)
Q Consensus 537 pLV~LL~~~~~~v~~eAa~AL~~la 561 (663)
.++..|++.|.-++++|..-+..+.
T Consensus 354 tIleCL~DpD~SIkrralELs~~lv 378 (866)
T KOG1062|consen 354 TILECLKDPDVSIKRRALELSYALV 378 (866)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 5677777888888887776666665
No 64
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.15 Score=59.57 Aligned_cols=131 Identities=17% Similarity=0.141 Sum_probs=105.8
Q ss_pred HHHhccCC--CHHHHHHHHHHHHHhhcCCh------hhH-----------HHHHhcCChHHHHHhhccCChHHHHHHHHH
Q 037612 152 VAILYTAG--SLEHKSDAAASLVSLARDND------RYG-----------KLIIEEGGVGPLLKLVKEGKPEGQENAARA 212 (663)
Q Consensus 152 i~~L~~~G--~~e~k~~AA~~L~~La~~~~------~~~-----------~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~A 212 (663)
|..|+. . +.|.-..+..++.++...+| ..+ ..|-..+-|..|+..++..+-.++..|..-
T Consensus 67 i~vL~~-D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqL 145 (970)
T KOG0946|consen 67 IQVLQR-DYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQL 145 (970)
T ss_pred HHHHhh-ccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHH
Confidence 888887 4 67777888889988877653 111 123456789999999999999999999999
Q ss_pred HHHhcCC--CcchHHHH-HcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhcc
Q 037612 213 IGLLGRD--PESVEHMI-HSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAF 283 (663)
Q Consensus 213 L~nLs~~--~~~~~~iv-~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~s 283 (663)
|.+|-.+ .+-+..+. .=-||+.|+.+|.+..+-++-.+.--|..|+.+++..|..++-+++...|..+++.
T Consensus 146 lsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIee 219 (970)
T KOG0946|consen 146 LSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEE 219 (970)
T ss_pred HHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHh
Confidence 9998854 44555555 45699999999999888899999999999999999999999999999988888863
No 65
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.82 E-value=0.043 Score=60.04 Aligned_cols=267 Identities=17% Similarity=0.128 Sum_probs=166.0
Q ss_pred hhHhHHHHHHHHhccCC-CHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC--ChHHHHHHHHHHHHhcCC
Q 037612 143 PILCLIWEQVAILYTAG-SLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEG--KPEGQENAARAIGLLGRD 219 (663)
Q Consensus 143 ~i~~~v~~li~~L~~~G-~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg--~~~~q~~Aa~AL~nLs~~ 219 (663)
....+...+...|+. + +.+-..-|+.+|-.+.+. +++|-.++.++|+..|+..|.++ +...|.....+++-|+-+
T Consensus 153 e~~~~~~~l~~~l~~-~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn 230 (442)
T KOG2759|consen 153 ELDVYKGFLKEQLQS-STNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN 230 (442)
T ss_pred HHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC
Confidence 334445555667777 6 556677888899999987 77999999999999999999543 578999999999999999
Q ss_pred CcchHHHHHcCchHHHHHhhccC-ChhHHHHHHHHHHHHhcCCh------hHHHHHHhCCcHHHHHHHhccCcc-chhhh
Q 037612 220 PESVEHMIHSGVCLVFAKILKEG-PMKVQAVVAWAVSELAGNYP------KCQDLFAQHNIIRLLVGHLAFETV-QEHSK 291 (663)
Q Consensus 220 ~~~~~~iv~aGaIp~Lv~lL~s~-~~~vq~~Aa~aL~nLA~~~~------~~r~~i~~~g~I~~LV~LL~sgt~-~~~s~ 291 (663)
+.-.+.+-..+-|+.|++++++. .+.|-..+..++.|+....+ +....++.. -+++-+++|..+.. .++-.
T Consensus 231 ~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~-~v~k~l~~L~~rkysDEDL~ 309 (442)
T KOG2759|consen 231 PHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLC-KVLKTLQSLEERKYSDEDLV 309 (442)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhc-CchHHHHHHHhcCCCcHHHH
Confidence 99889998899999999999874 47788888999999987553 222344444 45677777764421 11100
Q ss_pred HHHh---hhh-hhHHHHHHhhcccCccccCCCCCccccch--hhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCccc
Q 037612 292 YAIV---SKA-TSIHAVVVASNKTNNANANGSNNKVIDDE--DKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQ 365 (663)
Q Consensus 292 ~~v~---~~~-~sl~~lv~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~ 365 (663)
..+- +.. .+.+.+--. |+ .|...+.+ + |+ |++
T Consensus 310 ~di~~L~e~L~~svq~LsSF------------------DeY~sEl~sG~L-~----WS-------------------P~H 347 (442)
T KOG2759|consen 310 DDIEFLTEKLKNSVQDLSSF------------------DEYKSELRSGRL-E----WS-------------------PVH 347 (442)
T ss_pred HHHHHHHHHHHHHHHhhccH------------------HHHHHHHHhCCc-C----CC-------------------ccc
Confidence 0000 000 011111000 00 00000000 0 00 111
Q ss_pred ccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhc
Q 037612 366 KQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESR 445 (663)
Q Consensus 366 ~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esg 445 (663)
+..+-=+++.....+ +|+.+..++.. -..-..||-. -+.|+.=++.+.+..++--..+..-|
T Consensus 348 k~e~FW~eNa~rlne---------nnyellkiL~~-----lLe~s~Dp~i----L~VAc~DIge~Vr~yP~gk~vv~k~g 409 (442)
T KOG2759|consen 348 KSEKFWRENADRLNE---------NNYELLKILIK-----LLETSNDPII----LCVACHDIGEYVRHYPEGKAVVEKYG 409 (442)
T ss_pred cccchHHHhHHHHhh---------ccHHHHHHHHH-----HHhcCCCCce----eehhhhhHHHHHHhCchHhHHHHHhc
Confidence 100000000000000 11111111100 0011235543 56788889999999999999999999
Q ss_pred cHHHHHHHhhcCChhHHHHHHHHHHHH
Q 037612 446 ALLCFAVLLEKGPEDVQYNSAMALMEI 472 (663)
Q Consensus 446 al~~L~~LL~~~~~~vq~~aa~AL~~i 472 (663)
|-.-++.|+...+++|+++|..|+..|
T Consensus 410 gKe~vM~Llnh~d~~Vry~ALlavQ~l 436 (442)
T KOG2759|consen 410 GKERVMNLLNHEDPEVRYHALLAVQKL 436 (442)
T ss_pred hHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 999999999999999999999887654
No 66
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=96.69 E-value=0.017 Score=66.06 Aligned_cols=127 Identities=13% Similarity=0.137 Sum_probs=102.5
Q ss_pred ccchhhHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC
Q 037612 139 AANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR 218 (663)
Q Consensus 139 a~~~~i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~ 218 (663)
..++.+.++ |.+|.. |+.-.+.-+..+|.|+..+-..+|...++.|||..|.+++.+.+...+.++.|+|.++.-
T Consensus 416 ~~~dv~~pl----vqll~d-p~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f 490 (678)
T KOG1293|consen 416 KRNDVAQPL----VQLLMD-PEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMF 490 (678)
T ss_pred ccchhHHHH----HHHhhC-cchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 445555555 667788 888899999999999988777789999999999999999999999999999999999996
Q ss_pred CCcchH--HHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHh
Q 037612 219 DPESVE--HMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQ 270 (663)
Q Consensus 219 ~~~~~~--~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~ 270 (663)
+.++.. ..-..=.-.-++.+.+++++.||+++-..|.||..+..+.-+.+.+
T Consensus 491 ~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 491 NCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLE 544 (678)
T ss_pred cchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence 554433 3334444556777888999999999999999999876566555544
No 67
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.63 E-value=0.003 Score=49.54 Aligned_cols=54 Identities=22% Similarity=0.153 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHh
Q 037612 162 EHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLL 216 (663)
Q Consensus 162 e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nL 216 (663)
..|..|+++|++++...+..-+. .-...+|.|+.+|+++++.++..|++||++|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 57899999999998765554443 3467899999999988899999999999986
No 68
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=96.55 E-value=0.026 Score=62.19 Aligned_cols=176 Identities=13% Similarity=0.214 Sum_probs=131.1
Q ss_pred hhhHHHhhhccHHHHHHHhhcCCh--hHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcC-cch
Q 037612 436 PICRSITESRALLCFAVLLEKGPE--DVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKAD-SDL 512 (663)
Q Consensus 436 ~~~~~I~esgal~~L~~LL~~~~~--~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~-~~l 512 (663)
..|..|-..|++.-|.+++...+. .|+.+|+.-|-+|.. +++...+-| .....++.+-+... +++
T Consensus 171 ~LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~-----------~~~~~Il~lAK~~e~~e~ 238 (832)
T KOG3678|consen 171 GLCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVAR-----------IGLGVILNLAKEREPVEL 238 (832)
T ss_pred hhhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhh-----------ccchhhhhhhhhcCcHHH
Confidence 468999999999999999998765 568899999988863 333222222 11223444444333 567
Q ss_pred hhHHHHHHHHhhhchh-----hHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHH
Q 037612 513 LIPCIKAVGNLARTFK-----ATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQL 587 (663)
Q Consensus 513 ~~~a~~aLg~La~~~~-----~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~L 587 (663)
......-|+++-.... -.++++|..++.-.+..++.+.+.++.||+|++-.+ +.+..+.|++....+-|.-|
T Consensus 239 aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~---~~a~qrrmveKr~~EWLF~L 315 (832)
T KOG3678|consen 239 ARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHG---GQAVQRRMVEKRAAEWLFPL 315 (832)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhc---hhHHHHHHHHhhhhhhhhhh
Confidence 7666666777644322 245788888888888999999999999999998544 35778899999999999988
Q ss_pred HhcCChhHHHHHHHHHHHHhcCCCChHHHHhccchhhhh
Q 037612 588 VYFGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVLE 626 (663)
Q Consensus 588 L~~~~~~~q~~Al~~L~~la~~~~~~~~i~~~~vl~~L~ 626 (663)
-.+.|+....+|..+.|.++.|-.-..++.+.|.+.+.|
T Consensus 316 A~skDel~R~~AClAV~vlat~KE~E~~VrkS~TlaLVE 354 (832)
T KOG3678|consen 316 AFSKDELLRLHACLAVAVLATNKEVEREVRKSGTLALVE 354 (832)
T ss_pred hcchHHHHHHHHHHHHhhhhhhhhhhHHHhhccchhhhh
Confidence 877788778899999999988877777777788776654
No 69
>PF05536 Neurochondrin: Neurochondrin
Probab=96.46 E-value=0.028 Score=64.90 Aligned_cols=134 Identities=15% Similarity=0.180 Sum_probs=107.7
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhhcCChh---hHHHHHhcCChHHHHHhhccCC-------hHHHHHHHHHHHHhc
Q 037612 148 IWEQVAILYTAGSLEHKSDAAASLVSLARDNDR---YGKLIIEEGGVGPLLKLVKEGK-------PEGQENAARAIGLLG 217 (663)
Q Consensus 148 v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~---~~~~Ive~G~Ip~Lv~LL~sg~-------~~~q~~Aa~AL~nLs 217 (663)
+.+-+.+|+. .+++.|.-+..-+-.+...++. .++.|.++=|..=|-+||+++. ...+.-|...|...+
T Consensus 7 l~~c~~lL~~-~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 7 LEKCLSLLKS-ADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHhcc-CCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 4455789999 8888888888888888776663 3456888778888999999843 346677888888888
Q ss_pred CCCcch--HHHHHcCchHHHHHhhccCCh-hHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCc
Q 037612 218 RDPESV--EHMIHSGVCLVFAKILKEGPM-KVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFET 285 (663)
Q Consensus 218 ~~~~~~--~~iv~aGaIp~Lv~lL~s~~~-~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt 285 (663)
.+++.. ..++ +-||.|++++.+++. ++...+..+|..++. +++.+..+.+.|+|+.|++.+.++.
T Consensus 86 ~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~~~ 153 (543)
T PF05536_consen 86 RDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPNQS 153 (543)
T ss_pred CChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHhCc
Confidence 876653 4454 479999999988776 899999999999995 6899999999999999999988753
No 70
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.35 E-value=0.091 Score=62.92 Aligned_cols=145 Identities=17% Similarity=0.203 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcC-ChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHh
Q 037612 418 YMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKG-PEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKA 496 (663)
Q Consensus 418 ~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~-~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~ 496 (663)
+.|++||..|..+..|-..-|+.-.+.+-+.-+..+|+.+ .+=++..+|.+|.-|= ++..+.|=+.-. -.
T Consensus 572 EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW---~d~~~Arw~G~r------~~ 642 (1387)
T KOG1517|consen 572 EQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLW---EDYDEARWSGRR------DN 642 (1387)
T ss_pred HHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hhcchhhhcccc------cc
Confidence 4799999999999999888888888888777666777775 5778888888887663 223333322111 12
Q ss_pred HHHHHHHHhhhcCcchhhHHHHHHHHhhhc----hhh-----------------HhhccHH----HHHHhcccCCHHHHH
Q 037612 497 VVDQLFRIIEKADSDLLIPCIKAVGNLART----FKA-----------------TETRMIV----PLVKLLDEREAEVSR 551 (663)
Q Consensus 497 vv~qL~~ll~~~~~~l~~~a~~aLg~La~~----~~~-----------------~e~~~I~----pLV~LL~~~~~~v~~ 551 (663)
..+-|..++.+.-+++...++-|||.+-++ |.. .|+ .|+ +|+.+++.+.+-|+.
T Consensus 643 AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~-~i~~~~~~ll~~vsdgsplvr~ 721 (1387)
T KOG1517|consen 643 AHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIED-LIIKGLMSLLALVSDGSPLVRT 721 (1387)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHH-HHHhhHHHHHHHHhccchHHHH
Confidence 456788888888899999999999998776 332 111 233 899999999999999
Q ss_pred HHHHHHHhcccCCCCCChhhHHHHH
Q 037612 552 EASIALTKFACSDNYLHSDHSKAII 576 (663)
Q Consensus 552 eAa~AL~~la~~~~~~~~~~~~~Iv 576 (663)
|.+.+|+.|+.+ |..|.+..+
T Consensus 722 ev~v~ls~~~~g----~~~~~~~va 742 (1387)
T KOG1517|consen 722 EVVVALSHFVVG----YVSHLKVVA 742 (1387)
T ss_pred HHHHHHHHHHHh----hHHHhHHHh
Confidence 999999999855 345554443
No 71
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.22 E-value=0.018 Score=51.65 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhc-CCCcchHHHHHcCchHHHHHhhcc--CChhHHHHHHHHHHHHhcCChhHHHHHHhCC
Q 037612 206 QENAARAIGLLG-RDPESVEHMIHSGVCLVFAKILKE--GPMKVQAVVAWAVSELAGNYPKCQDLFAQHN 272 (663)
Q Consensus 206 q~~Aa~AL~nLs-~~~~~~~~iv~aGaIp~Lv~lL~s--~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g 272 (663)
+..-...|+||+ .++.++..+.+.|+||.+...+.- ..|-+++.|.+||.||+.+++++|+.|.+..
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~ 72 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQLE 72 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhcc
Confidence 455678899999 478999999999999999998853 5689999999999999999999999987644
No 72
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.19 E-value=0.73 Score=53.30 Aligned_cols=171 Identities=15% Similarity=0.140 Sum_probs=109.1
Q ss_pred cHHHHHHHHHhhh-----cchHHHHhhccccCCCCccccCCCCcccchhhHhHHHHHHHHhccCCCHHHHHHHHHHHHHh
Q 037612 100 AFRKMSSQLENSI-----GDVSWLLRVSASAEDRDDEYLGLPPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSL 174 (663)
Q Consensus 100 ~l~~l~~~L~~~~-----~~~~~ll~~s~~~~~~~~~~~~~p~ia~~~~i~~~v~~li~~L~~~G~~e~k~~AA~~L~~L 174 (663)
.+|.|...|++.. |...+|-+++-..... +..-+.+.|+.+++-.++...++ .++..|..|..++-..
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~------lds~~~~rpl~~mipkfl~f~~h-~spkiRs~A~~cvNq~ 201 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQF------LDSDVLTRPLNIMIPKFLQFFKH-PSPKIRSHAVGCVNQF 201 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHH------HhhhcccCchHHhHHHHHHHHhC-CChhHHHHHHhhhhhe
Confidence 4566666665532 3466665544321111 00112378888888888888899 9999999998887665
Q ss_pred hcCChhhHHHHHhcC-ChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHH
Q 037612 175 ARDNDRYGKLIIEEG-GVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWA 253 (663)
Q Consensus 175 a~~~~~~~~~Ive~G-~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~a 253 (663)
.-. .....+...+ -+..|-.|-...+++++++-..+|..|-.....+-.=--.+.|.-+++.-++.+.+|--.|++-
T Consensus 202 i~~--~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEF 279 (885)
T KOG2023|consen 202 III--QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEF 279 (885)
T ss_pred eec--CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHH
Confidence 432 2233333322 4555666655557999999999999888533222222234667777777788888999999999
Q ss_pred HHHHhcCChhHHHHHHhC--CcHHHHHHH
Q 037612 254 VSELAGNYPKCQDLFAQH--NIIRLLVGH 280 (663)
Q Consensus 254 L~nLA~~~~~~r~~i~~~--g~I~~LV~L 280 (663)
...+|.+ |-+++.+... ..||.|++=
T Consensus 280 wla~aeq-pi~~~~L~p~l~kliPvLl~~ 307 (885)
T KOG2023|consen 280 WLALAEQ-PICKEVLQPYLDKLIPVLLSG 307 (885)
T ss_pred HHHHhcC-cCcHHHHHHHHHHHHHHHHcc
Confidence 9999975 5777766542 345555543
No 73
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.13 E-value=0.14 Score=60.55 Aligned_cols=152 Identities=19% Similarity=0.179 Sum_probs=114.9
Q ss_pred HHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHH
Q 037612 425 RALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRI 504 (663)
Q Consensus 425 ~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~l 504 (663)
+.+.++..|++ . +--++-.++...+.+.++|+-.=.=|..+ ++.+|+.. .-+++++++=
T Consensus 42 ~iIa~M~~G~d-m------ssLf~dViK~~~trd~ElKrL~ylYl~~y---ak~~P~~~-----------lLavNti~kD 100 (757)
T COG5096 42 KIIAQMSLGED-M------SSLFPDVIKNVATRDVELKRLLYLYLERY---AKLKPELA-----------LLAVNTIQKD 100 (757)
T ss_pred HHHHHHhcCCC-h------HHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hccCHHHH-----------HHHHHHHHhh
Confidence 57788888876 2 12345666777788889998655555444 34445433 3467888888
Q ss_pred hhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHH
Q 037612 505 IEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHL 584 (663)
Q Consensus 505 l~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~L 584 (663)
++++++.++..|++.++.|-..--. ..+++|+.++|.++.++|++.|+.|+.++=.-+ -+...+.|-+.++
T Consensus 101 l~d~N~~iR~~AlR~ls~l~~~el~--~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld-------~~l~~~~g~~~~l 171 (757)
T COG5096 101 LQDPNEEIRGFALRTLSLLRVKELL--GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD-------KDLYHELGLIDIL 171 (757)
T ss_pred ccCCCHHHHHHHHHHHHhcChHHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC-------HhhhhcccHHHHH
Confidence 9999999999999999877432111 347999999999999999999999999994222 2356788899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHH
Q 037612 585 VQLVYFGEQIVQLSALVLLCYI 606 (663)
Q Consensus 585 v~LL~~~~~~~q~~Al~~L~~l 606 (663)
..|+...+|.+...|+.+|..+
T Consensus 172 ~~l~~D~dP~Vi~nAl~sl~~i 193 (757)
T COG5096 172 KELVADSDPIVIANALASLAEI 193 (757)
T ss_pred HHHhhCCCchHHHHHHHHHHHh
Confidence 9999999998888899999766
No 74
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.12 E-value=0.018 Score=51.70 Aligned_cols=65 Identities=28% Similarity=0.291 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhcc--CChHHHHHHHHHHHHhc-CCCcchHHHHH
Q 037612 164 KSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKE--GKPEGQENAARAIGLLG-RDPESVEHMIH 228 (663)
Q Consensus 164 k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~s--g~~~~q~~Aa~AL~nLs-~~~~~~~~iv~ 228 (663)
|..-...|++|+..+..+++.|.+.||||.+++.-.- .+|-++|.|.+||.||+ .+++|+..|.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 5667788999999999999999999999999998653 36999999999999999 57888888765
No 75
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.00 E-value=0.49 Score=50.23 Aligned_cols=114 Identities=21% Similarity=0.249 Sum_probs=86.8
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHH-HhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHH
Q 037612 149 WEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLI-IEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMI 227 (663)
Q Consensus 149 ~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~I-ve~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv 227 (663)
-+++..|+. -++..|..|...|..|... . .+... .+.-.++.|.+|+....+ -+.|++||.|+|.++.-+..++
T Consensus 6 ~elv~ll~~-~sP~v~~~AV~~l~~lt~~-~-~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 6 VELVELLHS-LSPPVRKAAVEHLLGLTGR-G-LQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHhcc-CChHHHHHHHHHHhhcccc-c-hhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 456888899 9999999999999998764 1 12211 123357888899876555 7789999999999999999998
Q ss_pred HcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHH
Q 037612 228 HSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLF 268 (663)
Q Consensus 228 ~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i 268 (663)
.. .+..++..+.++....-...+..|+||+..+.......
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll 120 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALL 120 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHH
Confidence 88 78888888877755666778889999998665555443
No 76
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.83 E-value=0.51 Score=55.32 Aligned_cols=95 Identities=22% Similarity=0.192 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhh
Q 037612 160 SLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKIL 239 (663)
Q Consensus 160 ~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL 239 (663)
+...|.-|.++++.+-. ++... -...||.++|+.+++-.++.|+..+.++ +..+.+...+.|.++.|-.++
T Consensus 99 np~iR~lAlrtm~~l~v--~~i~e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl--~~~~~~~~~~~gl~~~L~~ll 169 (734)
T KOG1061|consen 99 NPLIRALALRTMGCLRV--DKITE-----YLCDPLLKCLKDDDPYVRKTAAVCVAKL--FDIDPDLVEDSGLVDALKDLL 169 (734)
T ss_pred CHHHHHHHhhceeeEee--hHHHH-----HHHHHHHHhccCCChhHHHHHHHHHHHh--hcCChhhccccchhHHHHHHh
Confidence 44555555555555432 11111 2477999999999999999888777665 456778888999999999999
Q ss_pred ccCChhHHHHHHHHHHHHhcCChh
Q 037612 240 KEGPMKVQAVVAWAVSELAGNYPK 263 (663)
Q Consensus 240 ~s~~~~vq~~Aa~aL~nLA~~~~~ 263 (663)
.+.++.|..+|..+|..+...+++
T Consensus 170 ~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 170 SDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred cCCCchHHHHHHHHHHHHHHhCCC
Confidence 998999999999999999876543
No 77
>PF05536 Neurochondrin: Neurochondrin
Probab=95.67 E-value=0.13 Score=59.52 Aligned_cols=153 Identities=18% Similarity=0.237 Sum_probs=101.0
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcC-c---c---hhhHHHHH
Q 037612 447 LLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKAD-S---D---LLIPCIKA 519 (663)
Q Consensus 447 l~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~-~---~---l~~~a~~a 519 (663)
+.-..++|+..+++.|.-+..-+-.+....+.+...+|..|+- -..+-|-||++.+. + . .+.-++.-
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~a------ig~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv 80 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEA------IGFKFLDRLLRTGSVPSDCPPEEYLSLAVSV 80 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHh------cChhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 4455678888885555554444445544444344445545532 23567889999854 1 2 22223333
Q ss_pred HHHhhhchhhH-h---hccHHHHHHhcccCCH-HHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChh
Q 037612 520 VGNLARTFKAT-E---TRMIVPLVKLLDEREA-EVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQI 594 (663)
Q Consensus 520 Lg~La~~~~~~-e---~~~I~pLV~LL~~~~~-~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~ 594 (663)
|.+.++..... . ..-||.|++.+.+.+. .+..++...|..+++. ++..+++++.|+++.|++.+..+..
T Consensus 81 L~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-----~~G~~aLl~~g~v~~L~ei~~~~~~- 154 (543)
T PF05536_consen 81 LAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-----PEGAKALLESGAVPALCEIIPNQSF- 154 (543)
T ss_pred HHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-----cHhHHHHHhcCCHHHHHHHHHhCcc-
Confidence 33333321111 1 2459999999987777 9999999999999843 5889999999999999999988544
Q ss_pred HHHHHHHHHHHHhcCCC
Q 037612 595 VQLSALVLLCYIALHVP 611 (663)
Q Consensus 595 ~q~~Al~~L~~la~~~~ 611 (663)
.+..|+.+|.++....+
T Consensus 155 ~~E~Al~lL~~Lls~~~ 171 (543)
T PF05536_consen 155 QMEIALNLLLNLLSRLG 171 (543)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 66779999988865544
No 78
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=95.63 E-value=0.017 Score=54.31 Aligned_cols=95 Identities=14% Similarity=0.087 Sum_probs=83.9
Q ss_pred CChHHHHHhhccC-ChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHH
Q 037612 189 GGVGPLLKLVKEG-KPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDL 267 (663)
Q Consensus 189 G~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~ 267 (663)
+-+..||.-.... +.+.|+.-..-|.|.+-+|.|-..+.+..++..+|.-|...+..+.+.+.++|+|++. ++.+...
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~~ 94 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHHH
Confidence 4466777777654 5889998888888999999999999999999999999999999999999999999997 6788899
Q ss_pred HHhCCcHHHHHHHhccC
Q 037612 268 FAQHNIIRLLVGHLAFE 284 (663)
Q Consensus 268 i~~~g~I~~LV~LL~sg 284 (663)
|.+.+++|..+..|++.
T Consensus 95 I~ea~g~plii~~lssp 111 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSP 111 (173)
T ss_pred HHHhcCCceEEeecCCC
Confidence 99999999999888765
No 79
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=2.7 Score=51.00 Aligned_cols=113 Identities=12% Similarity=0.055 Sum_probs=88.0
Q ss_pred hHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHH
Q 037612 146 CLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEH 225 (663)
Q Consensus 146 ~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~ 225 (663)
..+.-++..|+.-|+...+.-|...+.-+. .+..+...+++.|.+-.|+.||-| -|..++.+..+|+.|+.+++....
T Consensus 1771 g~F~l~~~~lr~~~~~~iq~LaL~Vi~~~T-an~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~ke 1848 (2235)
T KOG1789|consen 1771 GNFPLLITYLRCRKHPKLQILALQVILLAT-ANKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKE 1848 (2235)
T ss_pred cccHHHHHHHHHcCCchHHHHHHHHHHHHh-cccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHH
Confidence 333444555555255556666666665554 567788899999999999999976 578899999999999999999999
Q ss_pred HHHcCchHHHHHhhc-cCChhHHHHHHHHHHHHhcC
Q 037612 226 MIHSGVCLVFAKILK-EGPMKVQAVVAWAVSELAGN 260 (663)
Q Consensus 226 iv~aGaIp~Lv~lL~-s~~~~vq~~Aa~aL~nLA~~ 260 (663)
-.+.|++--+..++. +.++.++.++|..++.|..+
T Consensus 1849 A~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1849 ALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred HHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence 999999888887774 46688889999999999863
No 80
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.33 E-value=1.6 Score=50.15 Aligned_cols=136 Identities=18% Similarity=0.240 Sum_probs=86.8
Q ss_pred HHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhh------hc-CCC-----
Q 037612 423 AARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRS------AF-KPN----- 490 (663)
Q Consensus 423 Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~------a~-~~~----- 490 (663)
+...|+.++. ....+.+...+..+|++...|-...+++|+.+-.+|-.++..-+ |+++.+- ++ +|+
T Consensus 274 slellg~m~~-~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svid-N~dI~~~ip~Lld~l~dp~~~~~e 351 (569)
T KOG1242|consen 274 SLELLGAMAD-CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID-NPDIQKIIPTLLDALADPSCYTPE 351 (569)
T ss_pred HHHHHHHHHH-hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHhcCcccchHH
Confidence 3334444443 23334445556678888888888888888888888888876654 6666651 01 111
Q ss_pred ---------------CchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHh--h----ccHHHHHHhcccCCHHH
Q 037612 491 ---------------APACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATE--T----RMIVPLVKLLDEREAEV 549 (663)
Q Consensus 491 ---------------~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e--~----~~I~pLV~LL~~~~~~v 549 (663)
.|.-.-.++-|.+=+...+...+..++..+||+++-..... . ..+|.|=..+....|++
T Consensus 352 ~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEv 431 (569)
T KOG1242|consen 352 CLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEV 431 (569)
T ss_pred HHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhH
Confidence 12222244545577777777888899999999998663322 1 23444444556779999
Q ss_pred HHHHHHHHHhc
Q 037612 550 SREASIALTKF 560 (663)
Q Consensus 550 ~~eAa~AL~~l 560 (663)
+..+++||+.+
T Consensus 432 R~vaarAL~~l 442 (569)
T KOG1242|consen 432 RAVAARALGAL 442 (569)
T ss_pred HHHHHHHHHHH
Confidence 99999999766
No 81
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.06 E-value=0.42 Score=48.27 Aligned_cols=181 Identities=17% Similarity=0.162 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHhcCC--hhhhHHHhh--hccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchh
Q 037612 419 MKAMAARALWHLAKGN--SPICRSITE--SRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPAC 494 (663)
Q Consensus 419 lk~~Aa~AL~~La~gn--~~~~~~I~e--sgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~ 494 (663)
-+..|..-|-.+..|+ ......+.+ ...+.++...+.+....+-..|+.++..++..-.+. |. |-+
T Consensus 23 ~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~-------~~---~~~ 92 (228)
T PF12348_consen 23 ERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH-------FE---PYA 92 (228)
T ss_dssp HHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG-------GH---HHH
T ss_pred HHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh-------HH---HHH
Confidence 4677888888888877 222222222 133457777777778889999999999887544322 22 334
Q ss_pred HhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhcc-HHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHH
Q 037612 495 KAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRM-IVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSK 573 (663)
Q Consensus 495 ~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~-I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~ 573 (663)
...++.|++.+.+....+...|..+|-.+...... ..++ ++.+...+.+.++.++.+++..|..+...-. ....
T Consensus 93 ~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~-~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~----~~~~ 167 (228)
T PF12348_consen 93 DILLPPLLKKLGDSKKFIREAANNALDAIIESCSY-SPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG----SDSS 167 (228)
T ss_dssp HHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H---HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---------G
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc----chHh
Confidence 56788888888877777888898889888775441 1234 6777777899999999999998888753211 0011
Q ss_pred HHHH----cCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCChH
Q 037612 574 AIIS----AGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSE 614 (663)
Q Consensus 574 ~Iv~----~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~~~ 614 (663)
.+-. ..-++.++.++..+++.+...|-.+++.+..+.|++.
T Consensus 168 ~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 168 VLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp GG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred hhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 1111 2345677788889999898889999998877777654
No 82
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.98 E-value=0.48 Score=55.13 Aligned_cols=224 Identities=15% Similarity=0.189 Sum_probs=143.7
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHHhcC-CCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHH
Q 037612 191 VGPLLKLVKEGKPEGQENAARAIGLLGR-DPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFA 269 (663)
Q Consensus 191 Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~-~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~ 269 (663)
-+-++.||.+..+-+++.|...|+.+.. .|+ ++ .-.+|-|++=|.++|+.|+..|+..++.||..+|.+--.+
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe---Al--r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L- 219 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE---AL--RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL- 219 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH---hH--hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-
Confidence 4567889998889999999999999984 443 33 2368999999999999999999999999998777653332
Q ss_pred hCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchh
Q 037612 270 QHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHN 349 (663)
Q Consensus 270 ~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~ 349 (663)
-|.+-.||...+ ..|.. |+ +.+. +
T Consensus 220 ----AP~ffkllttSs----NNWmL------IK-iiKL----------------F------------------------- 243 (877)
T KOG1059|consen 220 ----APLFYKLLVTSS----NNWVL------IK-LLKL----------------F------------------------- 243 (877)
T ss_pred ----cHHHHHHHhccC----CCeeh------HH-HHHH----------------H-------------------------
Confidence 366677775332 01111 00 0000 0
Q ss_pred hHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHH
Q 037612 350 VVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWH 429 (663)
Q Consensus 350 ~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~ 429 (663)
+++. |+ | |-
T Consensus 244 -----~aLt----------------------------------pl----------------E-PR--------------- 252 (877)
T KOG1059|consen 244 -----AALT----------------------------------PL----------------E-PR--------------- 252 (877)
T ss_pred -----hhcc----------------------------------cc----------------C-ch---------------
Confidence 0000 00 0 00
Q ss_pred HhcCChhhhHHHhhhccHHHHHHHhhcCC-hhHHHHHHHHHHH--HhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhh
Q 037612 430 LAKGNSPICRSITESRALLCFAVLLEKGP-EDVQYNSAMALME--ITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIE 506 (663)
Q Consensus 430 La~gn~~~~~~I~esgal~~L~~LL~~~~-~~vq~~aa~AL~~--i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~ 506 (663)
.-..-+++|..|+++.. ..+-|+|.-++-. +.++-.++. ..++..|.-|--+++
T Consensus 253 ------------LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~-----------asiqLCvqKLr~fie 309 (877)
T KOG1059|consen 253 ------------LGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHS-----------ASIQLCVQKLRIFIE 309 (877)
T ss_pred ------------hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcH-----------HHHHHHHHHHhhhhh
Confidence 00123556666666654 3677777666532 222211121 223456777888999
Q ss_pred hcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHH
Q 037612 507 KADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAII 576 (663)
Q Consensus 507 ~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv 576 (663)
+.|+.+++-++-|++-++.+....-..--.-++++|++.|+-++-+|..-|..+.+. +|.+.|+
T Consensus 310 dsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk------kNl~eIV 373 (877)
T KOG1059|consen 310 DSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSK------KNLMEIV 373 (877)
T ss_pred cCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh------hhHHHHH
Confidence 999999999999999998876542222234568889999999999988888877644 3455555
No 83
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=6.3 Score=42.46 Aligned_cols=126 Identities=16% Similarity=0.106 Sum_probs=97.8
Q ss_pred hccCCCHHHHHHHHHHHHHhhcCChhh----HHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcC
Q 037612 155 LYTAGSLEHKSDAAASLVSLARDNDRY----GKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSG 230 (663)
Q Consensus 155 L~~~G~~e~k~~AA~~L~~La~~~~~~----~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aG 230 (663)
|.. .+..+|.-|+..++.+..++|.| ...++..|..|.++.++...+.++-+.|...|..|+..++--..|++..
T Consensus 91 Lia-ddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSe 169 (524)
T KOG4413|consen 91 LIA-DDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESE 169 (524)
T ss_pred ccC-CcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccc
Confidence 334 57789999999999988777744 3456688999999999988889999999999999999999999999888
Q ss_pred chHHHHHh---hccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhc
Q 037612 231 VCLVFAKI---LKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLA 282 (663)
Q Consensus 231 aIp~Lv~l---L~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~ 282 (663)
-..++-.. .++. .-++..+-..+-.+.+.+++.-..+-..|.+..|..=|.
T Consensus 170 llDdlhlrnlaakcn-diaRvRVleLIieifSiSpesaneckkSGLldlLeaElk 223 (524)
T KOG4413|consen 170 LLDDLHLRNLAAKCN-DIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELK 223 (524)
T ss_pred cCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhc
Confidence 77765433 2333 345667777777887778888888888887666655554
No 84
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.37 E-value=8.2 Score=45.59 Aligned_cols=111 Identities=24% Similarity=0.139 Sum_probs=81.0
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhh---HHHHHhcCChHHHHHhhccCChHHH---HHHHHHHHHhcCCC
Q 037612 147 LIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRY---GKLIIEEGGVGPLLKLVKEGKPEGQ---ENAARAIGLLGRDP 220 (663)
Q Consensus 147 ~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~---~~~Ive~G~Ip~Lv~LL~sg~~~~q---~~Aa~AL~nLs~~~ 220 (663)
++-..+.+|++ .+..+|++||..+.+++.. -++ -+.....|.| |.+.|.+..+++- -.|..|+.|.-+-.
T Consensus 800 i~stiL~rLnn-ksa~vRqqaadlis~la~V-lktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~ 875 (1172)
T KOG0213|consen 800 ICSTILWRLNN-KSAKVRQQAADLISSLAKV-LKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMT 875 (1172)
T ss_pred HHHHHHHHhcC-CChhHHHHHHHHHHHHHHH-HHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhcccc
Confidence 44556779999 9999999999999999853 111 2334445544 7778877777654 45666666665333
Q ss_pred cchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChh
Q 037612 221 ESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPK 263 (663)
Q Consensus 221 ~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~ 263 (663)
.-..-| .|.+|.|.-+|++.+..||++....++.+|..+++
T Consensus 876 km~pPi--~dllPrltPILknrheKVqen~IdLvg~IadrgpE 916 (1172)
T KOG0213|consen 876 KMTPPI--KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPE 916 (1172)
T ss_pred ccCCCh--hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcc
Confidence 333333 57899999999999999999999999999987766
No 85
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.36 E-value=12 Score=44.00 Aligned_cols=91 Identities=16% Similarity=0.255 Sum_probs=71.0
Q ss_pred HHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHh--hccHHHHHHhcc-cCCHHHHHHHHHHHHhcccCCCCCChhhHH
Q 037612 497 VVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATE--TRMIVPLVKLLD-EREAEVSREASIALTKFACSDNYLHSDHSK 573 (663)
Q Consensus 497 vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e--~~~I~pLV~LL~-~~~~~v~~eAa~AL~~la~~~~~~~~~~~~ 573 (663)
.++||-.+|.+..+.+.+-+..++.-|+..-.+.+ +.-...++..|. ++|.-+++.|+.-|..+|- .+|.+
T Consensus 330 ~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD------~~Nak 403 (938)
T KOG1077|consen 330 AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCD------VSNAK 403 (938)
T ss_pred HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhc------hhhHH
Confidence 57889999999999999999888888877644433 123777888898 9999999999999999973 36688
Q ss_pred HHHHcCCHHHHHHHHhcCChhHHHH
Q 037612 574 AIISAGGAKHLVQLVYFGEQIVQLS 598 (663)
Q Consensus 574 ~Iv~~ggi~~Lv~LL~~~~~~~q~~ 598 (663)
.|++ -|.+.|.+-|..+++.
T Consensus 404 ~IV~-----elLqYL~tAd~siree 423 (938)
T KOG1077|consen 404 QIVA-----ELLQYLETADYSIREE 423 (938)
T ss_pred HHHH-----HHHHHHhhcchHHHHH
Confidence 8875 5778777777655554
No 86
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.34 E-value=0.84 Score=46.08 Aligned_cols=105 Identities=14% Similarity=0.126 Sum_probs=68.6
Q ss_pred ccCCCHHHHHHHHHHHHHhhcCC--hhhHHHHHhc--CChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCc
Q 037612 156 YTAGSLEHKSDAAASLVSLARDN--DRYGKLIIEE--GGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGV 231 (663)
Q Consensus 156 ~~~G~~e~k~~AA~~L~~La~~~--~~~~~~Ive~--G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGa 231 (663)
.. .+.+.|.+|...|..+...+ ..+...+++. ..++.++..+.+....+...|..++..|+..-...-.-.-.-.
T Consensus 17 ~~-~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 17 SE-SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp T--SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred Cc-cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 45 68899999999999998766 2334444321 5667888888877778899999999999954333232234458
Q ss_pred hHHHHHhhccCChhHHHHHHHHHHHHhcCC
Q 037612 232 CLVFAKILKEGPMKVQAVVAWAVSELAGNY 261 (663)
Q Consensus 232 Ip~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~ 261 (663)
+|+|++.+.++...+++.|..+|..+..+.
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~ 125 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESC 125 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHC
Confidence 899999999998899999999999999754
No 87
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=94.14 E-value=0.17 Score=56.28 Aligned_cols=228 Identities=18% Similarity=0.129 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHH
Q 037612 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVV 498 (663)
Q Consensus 419 lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv 498 (663)
++..|.|++.-+.-+...-+..++...+.......|.+..-.+|..++|++.+|++.=-.+.- .+.|.+++..-
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~P------s~~s~~eR~sg 480 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMP------TPDSFQERFSG 480 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCC------CchHHHHHHHH
Confidence 577788888665554433444444444444444555555668999999999999743221100 01123344433
Q ss_pred HHHHHHhhhc-----C-cchhhHHHHHHHHhhhchhhHh--------hc-cHHHHHHhcccCCHHHHHHHHHHHHhcccC
Q 037612 499 DQLFRIIEKA-----D-SDLLIPCIKAVGNLARTFKATE--------TR-MIVPLVKLLDEREAEVSREASIALTKFACS 563 (663)
Q Consensus 499 ~qL~~ll~~~-----~-~~l~~~a~~aLg~La~~~~~~e--------~~-~I~pLV~LL~~~~~~v~~eAa~AL~~la~~ 563 (663)
..|.+++... + +.++..+.++|||+..-....+ .+ ++..+-..+-...++|+=+|+.|++|+-.+
T Consensus 481 ~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn 560 (728)
T KOG4535|consen 481 LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKN 560 (728)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcC
Confidence 4444555432 2 6789999999999988655332 12 233333334577889999999999999876
Q ss_pred CCCCChhhHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCCCChH--HHHhccchhhhhhccccc---ccccc
Q 037612 564 DNYLHSDHSKAIISAGGAKHLVQLVYFG-EQIVQLSALVLLCYIALHVPDSE--DLAQAEVLTVLEWTSKQS---HMTQD 637 (663)
Q Consensus 564 ~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~-~~~~q~~Al~~L~~la~~~~~~~--~i~~~~vl~~L~~~~~~~---~~~q~ 637 (663)
+...-.+.-.+ --..+.|++|+... +-++.+.|+.+|.--....++.. .+.=...+..|.|..+.. +-...
T Consensus 561 ~a~~lq~~~wA---~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~~d~~~Lsw~~lv~aLi~s~~~v~f~eY~~~ 637 (728)
T KOG4535|consen 561 PALPLQTAPWA---SQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQYGDQYALSWNALVTALQKSEDTIDFLEYKYC 637 (728)
T ss_pred ccccccCCCch---HHHHHHHHHHHHHhccceEeehhhhhhcCCCCcccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64321111111 12457788988764 55677788888854443333322 222223344444433322 11111
Q ss_pred CCcHHHHHHHHHHHHhhh
Q 037612 638 ETVDPLLQDAKSRLELYQ 655 (663)
Q Consensus 638 ~~~~~l~~~a~~~le~~~ 655 (663)
.....-++.|+++++..-
T Consensus 638 Dsl~~q~c~av~hll~la 655 (728)
T KOG4535|consen 638 DSLRTQICQALIHLLSLA 655 (728)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 233445677777777643
No 88
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=94.01 E-value=6.4 Score=45.20 Aligned_cols=118 Identities=11% Similarity=0.059 Sum_probs=85.0
Q ss_pred hhhHhHHHHHHH-HhccCCCHHHHHHHHHHHHHhhcCChh-hHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCC
Q 037612 142 EPILCLIWEQVA-ILYTAGSLEHKSDAAASLVSLARDNDR-YGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRD 219 (663)
Q Consensus 142 ~~i~~~v~~li~-~L~~~G~~e~k~~AA~~L~~La~~~~~-~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~ 219 (663)
+-|.--||.+|. -+++ .+...|+.|+.+++++..+.++ .+..++ ..++|.+..++......++..++||++.|+.+
T Consensus 361 d~i~~pVl~FvEqni~~-~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 361 DKIMRPVLGFVEQNIRS-ESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred hHhHHHHHHHHHHhccC-chhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 344444777777 6788 8999999999999999865433 233333 56888999888766688999999999999852
Q ss_pred CcchHHHHHcCchHHHHHhhccC---ChhHHHHHHHHHHHHhcCChh
Q 037612 220 PESVEHMIHSGVCLVFAKILKEG---PMKVQAVVAWAVSELAGNYPK 263 (663)
Q Consensus 220 ~~~~~~iv~aGaIp~Lv~lL~s~---~~~vq~~Aa~aL~nLA~~~~~ 263 (663)
....|-..|-+++.+.-+.-| .|.+-.+..|+.-||+.+-++
T Consensus 439 --va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~ 483 (858)
T COG5215 439 --VAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAK 483 (858)
T ss_pred --HHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhh
Confidence 233344566667666655433 467778899999999975433
No 89
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=93.85 E-value=4.2 Score=42.57 Aligned_cols=55 Identities=29% Similarity=0.265 Sum_probs=42.5
Q ss_pred cHHHHHHhc--ccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHH
Q 037612 534 MIVPLVKLL--DEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLL 603 (663)
Q Consensus 534 ~I~pLV~LL--~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L 603 (663)
.||-|.+.| .+.++.|+.||+.||+..+.. .+++.|...+...++.+.+....+|
T Consensus 219 ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e---------------~~~~vL~e~~~D~~~vv~esc~val 275 (289)
T KOG0567|consen 219 AIPSLIKVLLDETEHPMVRHEAAEALGAIADE---------------DCVEVLKEYLGDEERVVRESCEVAL 275 (289)
T ss_pred hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH---------------HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 599999998 366889999999999988733 3677888888888886766544444
No 90
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=93.38 E-value=6.1 Score=46.60 Aligned_cols=182 Identities=18% Similarity=0.177 Sum_probs=112.8
Q ss_pred hccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHh
Q 037612 444 SRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNL 523 (663)
Q Consensus 444 sgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~L 523 (663)
++.+|.|-.+|++....||.|+..-+.-|+....+-...|.= ....=.|++++.+..-+....+..++|++
T Consensus 882 ~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREW---------MRIcfeLlelLkahkK~iRRaa~nTfG~I 952 (1172)
T KOG0213|consen 882 KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREW---------MRICFELLELLKAHKKEIRRAAVNTFGYI 952 (1172)
T ss_pred hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 345778888899999999999999998887544322111110 11223478888888889999999999999
Q ss_pred hhchhhHhhccHHHHHHhcc--cCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHH
Q 037612 524 ARTFKATETRMIVPLVKLLD--EREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALV 601 (663)
Q Consensus 524 a~~~~~~e~~~I~pLV~LL~--~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~ 601 (663)
|+.....+ ++..|++=|. ++...|....++|+..-.|+. ...+|.|++=-+.++..+|--.+-
T Consensus 953 akaIGPqd--VLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p-------------FtVLPalmneYrtPe~nVQnGVLk 1017 (1172)
T KOG0213|consen 953 AKAIGPQD--VLATLLNNLKVQERQNRVCTTVAIAIVAETCGP-------------FTVLPALMNEYRTPEANVQNGVLK 1017 (1172)
T ss_pred HHhcCHHH--HHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc-------------hhhhHHHHhhccCchhHHHHhHHH
Confidence 96444333 3333333332 222223333444443333433 236788888788888888888888
Q ss_pred HHHHHhcCCCChHHHHhccchhhhhhccccccccccCCcHHHHHHHHHHHHh
Q 037612 602 LLCYIALHVPDSEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLEL 653 (663)
Q Consensus 602 ~L~~la~~~~~~~~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~le~ 653 (663)
+||.+-.-.++...=.=..+.|.|+-+ .+-.|+..++++..+..|+.+
T Consensus 1018 alsf~FeyigemskdYiyav~PlleDA----lmDrD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1018 ALSFMFEYIGEMSKDYIYAVTPLLEDA----LMDRDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred HHHHHHHHHHHHhhhHHHHhhHHHHHh----hccccHHHHHHHHHHHHHHhc
Confidence 888774333332221113456666633 333456677888888888876
No 91
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=93.32 E-value=3.7 Score=47.38 Aligned_cols=115 Identities=22% Similarity=0.173 Sum_probs=81.4
Q ss_pred hHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCCh--hhHHHHHhcCChHHHHHhhccCChHHHH---HHHHHHHHhcC
Q 037612 144 ILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDND--RYGKLIIEEGGVGPLLKLVKEGKPEGQE---NAARAIGLLGR 218 (663)
Q Consensus 144 i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~--~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~---~Aa~AL~nLs~ 218 (663)
..++|...+.+|++ .++.+|++||...++|+..=. .--+.+...|.| |.+-|.+..++.-- +|..++.+.-.
T Consensus 602 l~~ivStiL~~L~~-k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 602 LSMIVSTILKLLRS-KPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred hHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhc
Confidence 34567788889999 999999999999999874311 002333344444 56666666676554 44455544444
Q ss_pred CCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChh
Q 037612 219 DPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPK 263 (663)
Q Consensus 219 ~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~ 263 (663)
...-+.-| .|.+|.|.-+|++....++++....++.++.++|+
T Consensus 679 ~~~mqpPi--~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pe 721 (975)
T COG5181 679 FRSMQPPI--SGILPSLTPILRNKHQKVVANTIALVGTICMNSPE 721 (975)
T ss_pred ccccCCch--hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcc
Confidence 33333334 68999999999999999999999999999987776
No 92
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.28 E-value=6 Score=46.13 Aligned_cols=54 Identities=19% Similarity=0.203 Sum_probs=46.1
Q ss_pred cchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccC
Q 037612 510 SDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACS 563 (663)
Q Consensus 510 ~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~ 563 (663)
-++.+.++.+++.||.+.+.-..+.+--||+++.+...+|+..|..+|..++..
T Consensus 387 ~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 387 YEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVH 440 (823)
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999876654456799999999999999999999999998743
No 93
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.49 E-value=1.1 Score=51.94 Aligned_cols=112 Identities=11% Similarity=0.106 Sum_probs=75.0
Q ss_pred hHhHHHH-HHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC-C--
Q 037612 144 ILCLIWE-QVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR-D-- 219 (663)
Q Consensus 144 i~~~v~~-li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~-~-- 219 (663)
.+-.+|. ++..... ++..+|..|+..|..|..... --+. .....+++|+..+..++..|...++-.+. .
T Consensus 195 d~~~~~~~l~~~~~~-~D~~Vrt~A~eglL~L~eg~k-L~~~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~ 267 (823)
T KOG2259|consen 195 DREHAARGLIYLEHD-QDFRVRTHAVEGLLALSEGFK-LSKA-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPA 267 (823)
T ss_pred cHHHHHHHHHHHhcC-CCcchHHHHHHHHHhhccccc-ccHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCC
Confidence 3445555 5556566 788888888888888765322 1122 35678889988888888888666655552 2
Q ss_pred ---C-cchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChh
Q 037612 220 ---P-ESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPK 263 (663)
Q Consensus 220 ---~-~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~ 263 (663)
. .+..++++ .+...+.+.+++.+-.|+..|+.+|+.+-..+++
T Consensus 268 ~~e~e~~e~kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee 314 (823)
T KOG2259|consen 268 PLERESEEEKLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEE 314 (823)
T ss_pred cccchhhhhhhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHH
Confidence 1 12333433 3677777888888889999999999988765433
No 94
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.28 E-value=0.16 Score=35.22 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=25.0
Q ss_pred cHHHHHHhcccCCHHHHHHHHHHHHhcc
Q 037612 534 MIVPLVKLLDEREAEVSREASIALTKFA 561 (663)
Q Consensus 534 ~I~pLV~LL~~~~~~v~~eAa~AL~~la 561 (663)
++|.++++|++.+++|+..|+.+|++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999986
No 95
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.26 E-value=0.61 Score=54.67 Aligned_cols=146 Identities=16% Similarity=0.191 Sum_probs=104.6
Q ss_pred hccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHh
Q 037612 444 SRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNL 523 (663)
Q Consensus 444 sgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~L 523 (663)
+.-.+.+++...+.+-++|+-+=-=|++.+. ..|+... ..+..+++=.+++++.+..-|++..|++
T Consensus 48 SslF~dvvk~~~T~dlelKKlvyLYl~nYa~---~~P~~a~-----------~avnt~~kD~~d~np~iR~lAlrtm~~l 113 (734)
T KOG1061|consen 48 SSLFPDVVKCMQTRDLELKKLVYLYLMNYAK---GKPDLAI-----------LAVNTFLKDCEDPNPLIRALALRTMGCL 113 (734)
T ss_pred HhhhHHHHhhcccCCchHHHHHHHHHHHhhc---cCchHHH-----------hhhhhhhccCCCCCHHHHHHHhhceeeE
Confidence 4456677777788888888877666776653 2444332 3344444444445566777777766665
Q ss_pred hhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHH
Q 037612 524 ARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLL 603 (663)
Q Consensus 524 a~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L 603 (663)
- +...-...+.||.+.|.+.++++++-|+....++-. .+.....+.|=+..|..|+...++.+..+|+.+|
T Consensus 114 ~--v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~-------~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL 184 (734)
T KOG1061|consen 114 R--VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD-------IDPDLVEDSGLVDALKDLLSDSNPMVVANALAAL 184 (734)
T ss_pred e--ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhc-------CChhhccccchhHHHHHHhcCCCchHHHHHHHHH
Confidence 3 333334579999999999999999999999999943 2344566788889999999988988888999999
Q ss_pred HHHhcCCCC
Q 037612 604 CYIALHVPD 612 (663)
Q Consensus 604 ~~la~~~~~ 612 (663)
..+....++
T Consensus 185 ~eI~e~~~~ 193 (734)
T KOG1061|consen 185 SEIHESHPS 193 (734)
T ss_pred HHHHHhCCC
Confidence 999755543
No 96
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=92.03 E-value=24 Score=40.83 Aligned_cols=115 Identities=16% Similarity=0.097 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhh
Q 037612 160 SLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKIL 239 (663)
Q Consensus 160 ~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL 239 (663)
..+.|..|..+.-.+.+.-+.+... -.+|+++.=+.+..-+.+..++..|+.|+......-...-...||.+.+.|
T Consensus 229 ~~~Vr~Aa~~a~kai~~~~~~~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl 304 (569)
T KOG1242|consen 229 INKVREAAVEAAKAIMRCLSAYAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVL 304 (569)
T ss_pred chhhhHHHHHHHHHHHHhcCcchhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHH
Confidence 4556666655555544322222111 136666666655567889999999999997777777777788999999999
Q ss_pred ccCChhHHHHHHHHHHHHhcC--ChhHHHHHHhCCcHHHHHHHhccC
Q 037612 240 KEGPMKVQAVVAWAVSELAGN--YPKCQDLFAQHNIIRLLVGHLAFE 284 (663)
Q Consensus 240 ~s~~~~vq~~Aa~aL~nLA~~--~~~~r~~i~~~g~I~~LV~LL~sg 284 (663)
.+.++++++.+-.+|-++... +++.+. .+|.|++-+...
T Consensus 305 ~DT~~evr~a~~~~l~~~~svidN~dI~~------~ip~Lld~l~dp 345 (569)
T KOG1242|consen 305 WDTKPEVRKAGIETLLKFGSVIDNPDIQK------IIPTLLDALADP 345 (569)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhccHHHHH------HHHHHHHHhcCc
Confidence 999999999999999999862 333322 347777766533
No 97
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=91.84 E-value=1.5 Score=49.62 Aligned_cols=145 Identities=17% Similarity=0.142 Sum_probs=106.1
Q ss_pred CCCCcccchhhHhHHHHHHH--------HhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC----
Q 037612 134 GLPPIAANEPILCLIWEQVA--------ILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEG---- 201 (663)
Q Consensus 134 ~~p~ia~~~~i~~~v~~li~--------~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg---- 201 (663)
++.++...+.+..+++ .+ .... .+.+....|..+|.|+.-.++..|...++.|+.+.|++.|+..
T Consensus 14 ~~~~l~~~~~l~~L~~--~a~l~~~~~~~~~~-~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~ 90 (446)
T PF10165_consen 14 GLDPLFTEEGLSTLLK--HAGLSESDEDEFES-PDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSS 90 (446)
T ss_pred cchhhccHHHHHHHHH--hcCCcccccccccC-CChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccC
Confidence 4446666666655544 22 2334 5778899999999999998999999999999999999999987
Q ss_pred -ChHHHHHHHHHHHHhcC-CCcchHHHHH-cCchHHHHHhhccC-----------------ChhHHHHHHHHHHHHhcCC
Q 037612 202 -KPEGQENAARAIGLLGR-DPESVEHMIH-SGVCLVFAKILKEG-----------------PMKVQAVVAWAVSELAGNY 261 (663)
Q Consensus 202 -~~~~q~~Aa~AL~nLs~-~~~~~~~iv~-aGaIp~Lv~lL~s~-----------------~~~vq~~Aa~aL~nLA~~~ 261 (663)
+.+.+....+-|+-++. ..+.+..+++ .+++..+++.|... +......+...++|+..+.
T Consensus 91 ~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~ 170 (446)
T PF10165_consen 91 QPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHY 170 (446)
T ss_pred CChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhcc
Confidence 68899999999999995 5677777775 48999888877410 2234556677889998655
Q ss_pred hhHHHHHHhCCcHHHHHHHhc
Q 037612 262 PKCQDLFAQHNIIRLLVGHLA 282 (663)
Q Consensus 262 ~~~r~~i~~~g~I~~LV~LL~ 282 (663)
+.... =.....++.|+.+|.
T Consensus 171 ~~~~~-~~~~~~~~~l~~il~ 190 (446)
T PF10165_consen 171 PKSVP-EEFSPSIPHLVSILR 190 (446)
T ss_pred Ccccc-hhhhHHHHHHHHHHH
Confidence 44333 123456788877765
No 98
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=91.53 E-value=0.66 Score=45.55 Aligned_cols=91 Identities=15% Similarity=0.210 Sum_probs=71.9
Q ss_pred cchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCH-HHHHHHH
Q 037612 510 SDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGA-KHLVQLV 588 (663)
Q Consensus 510 ~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi-~~Lv~LL 588 (663)
+.++..++.++|-|+.-+++.-...+|.+...|++.++.|++.|...|+++...+ +... .|-+ ..++.++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-~ik~--------k~~l~~~~l~~l 72 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED-MIKV--------KGQLFSRILKLL 72 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-ceee--------hhhhhHHHHHHH
Confidence 4566778889999988888766678999999999999999999999999998654 2221 2223 6777788
Q ss_pred hcCChhHHHHHHHHHHHHhcC
Q 037612 589 YFGEQIVQLSALVLLCYIALH 609 (663)
Q Consensus 589 ~~~~~~~q~~Al~~L~~la~~ 609 (663)
...++.++..|...+..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 888888888899888888655
No 99
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.47 E-value=0.27 Score=34.02 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=25.6
Q ss_pred hHHHHHhhccCChhHHHHHHHHHHHHhc
Q 037612 232 CLVFAKILKEGPMKVQAVVAWAVSELAG 259 (663)
Q Consensus 232 Ip~Lv~lL~s~~~~vq~~Aa~aL~nLA~ 259 (663)
+|.|+++|++++++|+..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999999985
No 100
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=91.26 E-value=7.2 Score=47.20 Aligned_cols=93 Identities=19% Similarity=0.170 Sum_probs=56.0
Q ss_pred hhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcC
Q 037612 512 LLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFG 591 (663)
Q Consensus 512 l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~ 591 (663)
...-.++.||-|.-.-+ ...+|.|=..++++.+..+.-+.-|+ +|.-++. +.-.+ .....-|.-...+++.+
T Consensus 948 tR~vvAECLGkL~l~ep---esLlpkL~~~~~S~a~~~rs~vvsav-Kfsisd~---p~~id-~~lk~~ig~fl~~~~dp 1019 (1233)
T KOG1824|consen 948 TRNVVAECLGKLVLIEP---ESLLPKLKLLLRSEASNTRSSVVSAV-KFSISDQ---PQPID-PLLKQQIGDFLKLLRDP 1019 (1233)
T ss_pred hHHHHHHHhhhHHhCCh---HHHHHHHHHHhcCCCcchhhhhhhee-eeeecCC---CCccC-HHHHHHHHHHHHHHhCC
Confidence 33444444554443221 13577777777777776666555554 4543331 11122 33445667788899999
Q ss_pred ChhHHHHHHHHHHHHhcCCCC
Q 037612 592 EQIVQLSALVLLCYIALHVPD 612 (663)
Q Consensus 592 ~~~~q~~Al~~L~~la~~~~~ 612 (663)
|..+...|+.++--.+.|-|.
T Consensus 1020 Dl~VrrvaLvv~nSaahNKps 1040 (1233)
T KOG1824|consen 1020 DLEVRRVALVVLNSAAHNKPS 1040 (1233)
T ss_pred chhHHHHHHHHHHHHHccCHh
Confidence 998877799988777666665
No 101
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=91.18 E-value=7.5 Score=44.99 Aligned_cols=140 Identities=14% Similarity=0.164 Sum_probs=83.2
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchh
Q 037612 449 CFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFK 528 (663)
Q Consensus 449 ~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~ 528 (663)
-|+.+|++.+.+++.+|.-++..|+..- -| +.|.+.|+.=++..+-.+.....-||+-.|..-.
T Consensus 734 eLvd~Lks~nKeiRR~A~~tfG~Is~ai-----------GP-----qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg 797 (975)
T COG5181 734 ELVDSLKSWNKEIRRNATETFGCISRAI-----------GP-----QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG 797 (975)
T ss_pred HHHHHHHHhhHHHHHhhhhhhhhHHhhc-----------CH-----HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC
Confidence 5778889999999999999999886332 12 3456666666655544444444445555553200
Q ss_pred hHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHH-HHhcCChhHHHHHHHHHHHHh
Q 037612 529 ATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQ-LVYFGEQIVQLSALVLLCYIA 607 (663)
Q Consensus 529 ~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~-LL~~~~~~~q~~Al~~L~~la 607 (663)
. -.++|.|..=-...+..|+.-...|++-+- .|.+...-+++. .|.||+. -|...|+.-..-|...+..++
T Consensus 798 p--fsVlP~lm~dY~TPe~nVQnGvLkam~fmF---eyig~~s~dYvy---~itPlleDAltDrD~vhRqta~nvI~Hl~ 869 (975)
T COG5181 798 P--FSVLPTLMSDYETPEANVQNGVLKAMCFMF---EYIGQASLDYVY---SITPLLEDALTDRDPVHRQTAMNVIRHLV 869 (975)
T ss_pred c--hhhHHHHHhcccCchhHHHHhHHHHHHHHH---HHHHHHHHHHHH---HhhHHHHhhhcccchHHHHHHHHHHHHHh
Confidence 0 125777766667777788887888877663 121211122343 3555553 455556643334777777777
Q ss_pred cCCCC
Q 037612 608 LHVPD 612 (663)
Q Consensus 608 ~~~~~ 612 (663)
+|.+-
T Consensus 870 Lnc~g 874 (975)
T COG5181 870 LNCPG 874 (975)
T ss_pred cCCCC
Confidence 77654
No 102
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.80 E-value=1.6 Score=51.52 Aligned_cols=151 Identities=23% Similarity=0.339 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHh----hhcCCCCchh
Q 037612 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRR----SAFKPNAPAC 494 (663)
Q Consensus 419 lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr----~a~~~~~~a~ 494 (663)
+.-.+|.+.|++|-.+ . ......+|++||++.. ++|+- .|.+|+-....++.+.. +.|...+-..
T Consensus 303 VVmA~aql~y~lAP~~-~------~~~i~kaLvrLLrs~~-~vqyv---vL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~ 371 (968)
T KOG1060|consen 303 VVMAVAQLFYHLAPKN-Q------VTKIAKALVRLLRSNR-EVQYV---VLQNIATISIKRPTLFEPHLKSFFVRSSDPT 371 (968)
T ss_pred HHHHHHhHHHhhCCHH-H------HHHHHHHHHHHHhcCC-cchhh---hHHHHHHHHhcchhhhhhhhhceEeecCCHH
Confidence 3567889999999643 2 2334678999998755 66663 34444433443443321 1222111100
Q ss_pred --H-----------------hHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHH
Q 037612 495 --K-----------------AVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASI 555 (663)
Q Consensus 495 --~-----------------~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~ 555 (663)
| -+...++.-|.+.|-++-..+++|||-+|........-.+..||.||++.+..|-.+|+.
T Consensus 372 ~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~ 451 (968)
T KOG1060|consen 372 QVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVV 451 (968)
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHH
Confidence 1 122334445555555677899999999998888777788999999999999999999999
Q ss_pred HHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHh
Q 037612 556 ALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVY 589 (663)
Q Consensus 556 AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~ 589 (663)
.+-.+...+- .+|-+. |..|.+|+.
T Consensus 452 vIk~Llq~~p---~~h~~i------i~~La~lld 476 (968)
T KOG1060|consen 452 VIKRLLQKDP---AEHLEI------LFQLARLLD 476 (968)
T ss_pred HHHHHHhhCh---HHHHHH------HHHHHHHhh
Confidence 9999975442 344333 335556553
No 103
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=90.23 E-value=1.1 Score=39.87 Aligned_cols=66 Identities=12% Similarity=0.135 Sum_probs=50.4
Q ss_pred CChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHH--HcCchHHHHHhhccCChhHHHHHHHHHHHH
Q 037612 189 GGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMI--HSGVCLVFAKILKEGPMKVQAVVAWAVSEL 257 (663)
Q Consensus 189 G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv--~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nL 257 (663)
-.|||++.++...+.+++..|..+|+||+... +..+. =......|.+++.+.++.||..| +.|-+|
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~--~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVA--RGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 36899999999999999999999999999633 23333 24577788888888888886544 666554
No 104
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.06 E-value=8.1 Score=47.21 Aligned_cols=187 Identities=13% Similarity=0.087 Sum_probs=135.6
Q ss_pred hcCcccccceecccccHHHHHHHHHhhhcchHHHHhhccccCCCC-ccccCCCCcccchhhHhHHHHHHHHhccCCCHHH
Q 037612 85 ANGIIKRVFTIIPAAAFRKMSSQLENSIGDVSWLLRVSASAEDRD-DEYLGLPPIAANEPILCLIWEQVAILYTAGSLEH 163 (663)
Q Consensus 85 ~~~~~~r~~~i~~~~~l~~l~~~L~~~~~~~~~ll~~s~~~~~~~-~~~~~~p~ia~~~~i~~~v~~li~~L~~~G~~e~ 163 (663)
++|...|. |..-+|-+++-|-+..+.+-+|.=++.-.+-+. +... |-.=+|-++ .+.+||+ ...|-
T Consensus 462 d~gse~r~----PPeQLPiVLQVLLSQvHRlRAL~LL~RFLDlGpWAV~L-----aLsVGIFPY---VLKLLQS-~a~EL 528 (1387)
T KOG1517|consen 462 DYGSESRT----PPEQLPIVLQVLLSQVHRLRALVLLARFLDLGPWAVDL-----ALSVGIFPY---VLKLLQS-SAREL 528 (1387)
T ss_pred HhccccCC----ChHhcchHHHHHHHHHHHHHHHHHHHHHhccchhhhhh-----hhccchHHH---HHHHhcc-chHhh
Confidence 44555554 788888888888777777666543443333221 1111 111123333 3678899 88888
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhcc-CC--hHHHHHHHHHHHHhcC-CCcchHHHHHcCchHHHHHhh
Q 037612 164 KSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKE-GK--PEGQENAARAIGLLGR-DPESVEHMIHSGVCLVFAKIL 239 (663)
Q Consensus 164 k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~s-g~--~~~q~~Aa~AL~nLs~-~~~~~~~iv~aGaIp~Lv~lL 239 (663)
|---+..=..+...++.++..+++++|=.-++..|.. +. ++.+--||..|..+.. ++-....-.+.+.|..-.+.|
T Consensus 529 rpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~l 608 (1387)
T KOG1517|consen 529 RPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHL 608 (1387)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHh
Confidence 8655444444333457888889999998889999987 33 4788899999999995 567788888999999999999
Q ss_pred ccC-ChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccC
Q 037612 240 KEG-PMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFE 284 (663)
Q Consensus 240 ~s~-~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sg 284 (663)
.++ .+-++.-.+-+|+.|=.+.+++|=...+.++..-|+.+|+..
T Consensus 609 nd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~ 654 (1387)
T KOG1517|consen 609 NDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDP 654 (1387)
T ss_pred cCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCc
Confidence 886 578888899999999999999999889999999999999754
No 105
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=89.93 E-value=1.3 Score=50.11 Aligned_cols=113 Identities=20% Similarity=0.222 Sum_probs=87.2
Q ss_pred HHHHHhhcCChhhHHHHHhcCChHHHHHhh---------c-cCChHHHHHHHHHHHHhcC-CCcchHHHHHcCchHHHHH
Q 037612 169 ASLVSLARDNDRYGKLIIEEGGVGPLLKLV---------K-EGKPEGQENAARAIGLLGR-DPESVEHMIHSGVCLVFAK 237 (663)
Q Consensus 169 ~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL---------~-sg~~~~q~~Aa~AL~nLs~-~~~~~~~iv~aGaIp~Lv~ 237 (663)
.+|.-|+++ +.+..-|....++..|+++- . ..+..+..+|.++|.|+-- ++.-++..++.|..+.+++
T Consensus 3 ~~LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~ 81 (446)
T PF10165_consen 3 ETLRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE 81 (446)
T ss_pred HHHHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence 455666665 44566666666677776665 2 3357899999999999995 6677888889999999999
Q ss_pred hhccC-----ChhHHHHHHHHHHHHhcCChhHHHHHHh-CCcHHHHHHHhc
Q 037612 238 ILKEG-----PMKVQAVVAWAVSELAGNYPKCQDLFAQ-HNIIRLLVGHLA 282 (663)
Q Consensus 238 lL~s~-----~~~vq~~Aa~aL~nLA~~~~~~r~~i~~-~g~I~~LV~LL~ 282 (663)
.|+.. +.+++-.....|+-++...+..+..+.+ .+++..|+..|.
T Consensus 82 ~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~ 132 (446)
T PF10165_consen 82 RLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALE 132 (446)
T ss_pred HHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHH
Confidence 99876 6888888999999998777777755554 588888888775
No 106
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=89.72 E-value=16 Score=40.51 Aligned_cols=62 Identities=16% Similarity=0.281 Sum_probs=48.8
Q ss_pred cchHHHHH-cCchHHHHHhhccCC---hhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhc
Q 037612 221 ESVEHMIH-SGVCLVFAKILKEGP---MKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLA 282 (663)
Q Consensus 221 ~~~~~iv~-aGaIp~Lv~lL~s~~---~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~ 282 (663)
+.-+-+++ .--...|-.+++... +.+-..|+..+..+-.++|.+-..+.+.|.++.+++-+.
T Consensus 96 ~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~ 161 (379)
T PF06025_consen 96 DRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAIT 161 (379)
T ss_pred cccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHh
Confidence 33444666 445666777777643 678889999999999999999999999999999988776
No 107
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=89.50 E-value=3.3 Score=40.21 Aligned_cols=111 Identities=21% Similarity=0.174 Sum_probs=89.0
Q ss_pred HHHHhcCChHHHHHhhccCCh------HHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccC--ChhHHHHHHHHH
Q 037612 183 KLIIEEGGVGPLLKLVKEGKP------EGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEG--PMKVQAVVAWAV 254 (663)
Q Consensus 183 ~~Ive~G~Ip~Lv~LL~sg~~------~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~--~~~vq~~Aa~aL 254 (663)
...+..||++.|++++++|+. +....+..|...|--+....+..++.-.|.-.+...... +..+...+...|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 456778999999999999873 566778888888887777778888888888888888754 478889999999
Q ss_pred HHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHH
Q 037612 255 SELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAI 294 (663)
Q Consensus 255 ~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v 294 (663)
-++..+++.....+.++=-++.|+.+|... .++.+.+++
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~-~~~iq~nai 123 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVS-NQEIQTNAI 123 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcC-CHHHHHHHH
Confidence 999988888788888887899999999874 344444433
No 108
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=89.13 E-value=1.9 Score=36.48 Aligned_cols=66 Identities=14% Similarity=0.256 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhcc-CChhHHHHHHHHHHHHhcCChhHHHHHHhCC
Q 037612 206 QENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKE-GPMKVQAVVAWAVSELAGNYPKCQDLFAQHN 272 (663)
Q Consensus 206 q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s-~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g 272 (663)
.+.|.||+++++..+..-..+-+.+.|+.++++-.+ +...++.-+-.+|+-++. ..+..+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence 578999999999988888888889999999999964 668999999999999996 567777776665
No 109
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=87.24 E-value=3.3 Score=40.64 Aligned_cols=92 Identities=16% Similarity=0.132 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCch-HHHHHh
Q 037612 160 SLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVC-LVFAKI 238 (663)
Q Consensus 160 ~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaI-p~Lv~l 238 (663)
++..|.++..+++.|+.--+. ++ +..+|.+...|+++++.+++.|..+|..|-..+-.+.. |-+ ..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LV-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HH-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHH
Confidence 356889999999999864332 33 46799999999999999999999999999864333222 344 778888
Q ss_pred hccCChhHHHHHHHHHHHHhcC
Q 037612 239 LKEGPMKVQAVVAWAVSELAGN 260 (663)
Q Consensus 239 L~s~~~~vq~~Aa~aL~nLA~~ 260 (663)
|.+.+++++..|...+..+...
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999864
No 110
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=87.20 E-value=1.7 Score=40.22 Aligned_cols=72 Identities=17% Similarity=0.156 Sum_probs=56.8
Q ss_pred hHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhc
Q 037612 146 CLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLG 217 (663)
Q Consensus 146 ~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs 217 (663)
-+++.|+.+|....+...-.-|+.=|+.+++.-+.-|..|-+.|+=..+.+|+.+++++++.+|..|+..|-
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 456778888854135556667888899999988887887778899999999999999999999999998764
No 111
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=86.86 E-value=5.5 Score=38.44 Aligned_cols=131 Identities=21% Similarity=0.294 Sum_probs=83.1
Q ss_pred cCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhH-----
Q 037612 456 KGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKAT----- 530 (663)
Q Consensus 456 ~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~----- 530 (663)
...++++..+..++..+-..+. .+ |+ +.+-+.+-..+.+++.+-...++.++..|=......
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~--~~-----~~------~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~ 82 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAR--EE-----FK------EKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELF 82 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHH--HH-----HH------HHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHC
T ss_pred CCCHhHHHHHHHHHHHHHHHhH--HH-----HH------HHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3456777777777765521111 11 11 223445556666666666666666666653332221
Q ss_pred -hhccHHHHHHhcc--cCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcC-Chh-HHHHHHHHHHH
Q 037612 531 -ETRMIVPLVKLLD--EREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFG-EQI-VQLSALVLLCY 605 (663)
Q Consensus 531 -e~~~I~pLV~LL~--~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~-~~~-~q~~Al~~L~~ 605 (663)
..+.++-++.+.+ ..+..++..++.+|..-|.+ +.++..+...|++.|-.+++.+ ++. +++.|+..||-
T Consensus 83 ~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d------~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 83 LSEGFLESLLPLASRKSKDRKVQKAALELLSAACID------KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS------HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc------HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 2467888888888 77888888888888776644 4577777788999999999644 565 68888888874
No 112
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=86.62 E-value=4.9 Score=42.11 Aligned_cols=84 Identities=15% Similarity=0.090 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHHhc-CCCcchHHHHHcCchHHHHHhhc-cCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHH
Q 037612 203 PEGQENAARAIGLLG-RDPESVEHMIHSGVCLVFAKILK-EGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGH 280 (663)
Q Consensus 203 ~~~q~~Aa~AL~nLs-~~~~~~~~iv~aGaIp~Lv~lL~-s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~L 280 (663)
......|...|..++ .++..+....+..++..|+++|. +..+.++..+..+|..+--++|.+...|.+.+|+..++.+
T Consensus 105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 344667888999998 58999999999999999999994 4668888888888888777788999999999999999999
Q ss_pred hccCcc
Q 037612 281 LAFETV 286 (663)
Q Consensus 281 L~sgt~ 286 (663)
+++...
T Consensus 185 lk~~~~ 190 (257)
T PF08045_consen 185 LKSKST 190 (257)
T ss_pred Hccccc
Confidence 997754
No 113
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=86.61 E-value=46 Score=35.09 Aligned_cols=61 Identities=28% Similarity=0.448 Sum_probs=44.0
Q ss_pred cCChHHHHHhhccCC--hHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHh
Q 037612 188 EGGVGPLLKLVKEGK--PEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELA 258 (663)
Q Consensus 188 ~G~Ip~Lv~LL~sg~--~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA 258 (663)
+.+||.|+..|...+ +-++..|+.||+++. +++ .++.|-+..+++...|++-+..|+..+-
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~~---------~~~~l~k~~~dp~~~v~ETc~lAi~rle 128 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DPE---------SLEILTKYIKDPCKEVRETCELAIKRLE 128 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhc-chh---------hHHHHHHHhcCCccccchHHHHHHHHHH
Confidence 346889998887543 677888999998877 433 3455666666777788887777777775
No 114
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.92 E-value=85 Score=37.47 Aligned_cols=135 Identities=16% Similarity=0.148 Sum_probs=100.7
Q ss_pred cCCCCcccchhhHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHH
Q 037612 133 LGLPPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARA 212 (663)
Q Consensus 133 ~~~p~ia~~~~i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~A 212 (663)
.|+..|..-+-.+-+..|++.+|.+ ..+-.|..|.-.|+.+- -.|-+.+. ..+|.|++=|+.+++.+|-.|+..
T Consensus 131 ~GLS~fvTpdLARDLa~Dv~tLL~s-skpYvRKkAIl~lykvF---LkYPeAlr--~~FprL~EkLeDpDp~V~SAAV~V 204 (877)
T KOG1059|consen 131 SGLSCIVTPDLARDLADDVFTLLNS-SKPYVRKKAILLLYKVF---LKYPEALR--PCFPRLVEKLEDPDPSVVSAAVSV 204 (877)
T ss_pred cccccccCchhhHHHHHHHHHHHhc-CchHHHHHHHHHHHHHH---HhhhHhHh--hhHHHHHHhccCCCchHHHHHHHH
Confidence 3555666666677788899999999 88899999988888765 34555553 689999999999999999999999
Q ss_pred HHHhcC-CCcchHHHHHcCchHHHHHhhccCC-hhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhcc
Q 037612 213 IGLLGR-DPESVEHMIHSGVCLVFAKILKEGP-MKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAF 283 (663)
Q Consensus 213 L~nLs~-~~~~~~~iv~aGaIp~Lv~lL~s~~-~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~s 283 (663)
++.||. +|.|--.+ -|.|.++|-+.+ -=+.....-..++|+--.|.-.. -.|+||.+|+.+
T Consensus 205 ICELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~s 267 (877)
T KOG1059|consen 205 ICELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMES 267 (877)
T ss_pred HHHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHh
Confidence 999994 88887655 488999996543 22333444455666655555433 367999999965
No 115
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=85.63 E-value=4.2 Score=36.19 Aligned_cols=59 Identities=15% Similarity=0.267 Sum_probs=47.1
Q ss_pred HhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHh----hccHHHHHHhcccCCHHHHHHH
Q 037612 495 KAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATE----TRMIVPLVKLLDEREAEVSREA 553 (663)
Q Consensus 495 ~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e----~~~I~pLV~LL~~~~~~v~~eA 553 (663)
+..+++++..+.+.|..+...+|++|.++++.+...- ..+..-|.+++.+.++.|+..|
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a 88 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA 88 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH
Confidence 3478889999999999999999999999998766421 2467777888888888887665
No 116
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=85.54 E-value=5.8 Score=43.82 Aligned_cols=116 Identities=13% Similarity=0.108 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHh
Q 037612 159 GSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKI 238 (663)
Q Consensus 159 G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~l 238 (663)
.....|++|..-+..+...... .+. +-.|.+..+|.+.+..++..+.-+..+|..|+. -+.+.++++||+.+|++.
T Consensus 80 ~~~~ER~QALkliR~~l~~~~~-~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l--~~P~lv~~~gG~~~L~~~ 155 (371)
T PF14664_consen 80 KNDVEREQALKLIRAFLEIKKG-PKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELAL--LNPELVAECGGIRVLLRA 155 (371)
T ss_pred CChHHHHHHHHHHHHHHHhcCC-ccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHh--hCHHHHHHcCCHHHHHHH
Confidence 3567888887766666544211 111 246788999999998889999999999999996 456678899999999999
Q ss_pred hccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHH
Q 037612 239 LKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVG 279 (663)
Q Consensus 239 L~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~ 279 (663)
+-+|..++.+..+.++.++-. +|..|..+...--+..|+.
T Consensus 156 l~d~~~~~~~~l~~~lL~lLd-~p~tR~yl~~~~dL~~l~a 195 (371)
T PF14664_consen 156 LIDGSFSISESLLDTLLYLLD-SPRTRKYLRPGFDLESLLA 195 (371)
T ss_pred HHhccHhHHHHHHHHHHHHhC-CcchhhhhcCCccHHHHHH
Confidence 998877788889999999984 7899988765444555444
No 117
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=85.14 E-value=2 Score=48.77 Aligned_cols=111 Identities=15% Similarity=0.193 Sum_probs=90.9
Q ss_pred HHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhH-----hhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhh
Q 037612 497 VVDQLFRIIEKADSDLLIPCIKAVGNLARTFKAT-----ETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDH 571 (663)
Q Consensus 497 vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~-----e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~ 571 (663)
+++.|++++..++..+..++..++-|..--|.+. ++++|..|+.++.+.+...+....|.|..+.-+ +.++
T Consensus 432 I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyn----cq~~ 507 (743)
T COG5369 432 IVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYN----CQKN 507 (743)
T ss_pred hHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhc----Ccch
Confidence 7788999999988888889989998988888774 467899999999999999999999999988522 2333
Q ss_pred HH-HHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCC
Q 037612 572 SK-AIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVP 611 (663)
Q Consensus 572 ~~-~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~ 611 (663)
.+ .....-|+..++.+-..++-++|..-+-.|.|+..+..
T Consensus 508 ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~ 548 (743)
T COG5369 508 EKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTS 548 (743)
T ss_pred hhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccc
Confidence 33 35667789999999888888899999999999976543
No 118
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=85.12 E-value=6.7 Score=38.19 Aligned_cols=105 Identities=16% Similarity=0.185 Sum_probs=73.1
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhhc-CChhhHHHHHhcCChHHHHHhhcc---------CChHHHHHHHHHHHHhcCCC
Q 037612 151 QVAILYTAGSLEHKSDAAASLVSLAR-DNDRYGKLIIEEGGVGPLLKLVKE---------GKPEGQENAARAIGLLGRDP 220 (663)
Q Consensus 151 li~~L~~~G~~e~k~~AA~~L~~La~-~~~~~~~~Ive~G~Ip~Lv~LL~s---------g~~~~q~~Aa~AL~nLs~~~ 220 (663)
+|..|+. +.... .-...|...-+ .+....+..++.||+..|+++|.. .+...+.....||..|..+.
T Consensus 71 ~i~~L~~-~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~ 147 (187)
T PF06371_consen 71 YIKKLKS-RPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTK 147 (187)
T ss_dssp HHHHHTT-T--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSH
T ss_pred HHHHHHc-cCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccH
Confidence 4677777 65443 22222222222 233445667789999999999953 12478889999999999887
Q ss_pred cchHHHH-HcCchHHHHHhhccCChhHHHHHHHHHHHHh
Q 037612 221 ESVEHMI-HSGVCLVFAKILKEGPMKVQAVVAWAVSELA 258 (663)
Q Consensus 221 ~~~~~iv-~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA 258 (663)
.....++ ..++|..|+..|.+.+..++..+...|+.++
T Consensus 148 ~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 148 YGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 7777776 5899999999999999999999999998876
No 119
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=85.07 E-value=1.9 Score=39.92 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=53.5
Q ss_pred hccHHHHHHhc-ccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 037612 532 TRMIVPLVKLL-DEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIA 607 (663)
Q Consensus 532 ~~~I~pLV~LL-~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la 607 (663)
-.++.-|+++| .+.++.+..-|+.=|+.|+.. +++....|-+.||-..+++|+.++++.++..|+.++--+.
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~----~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRH----YPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-----GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHH----ChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 35799999999 455666666788888999743 4565555666777777789999999999999999886553
No 120
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=85.03 E-value=84 Score=36.63 Aligned_cols=131 Identities=20% Similarity=0.196 Sum_probs=79.0
Q ss_pred HhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhh-Hh
Q 037612 453 LLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKA-TE 531 (663)
Q Consensus 453 LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~-~e 531 (663)
|+..|.-+.|.+..-||+.+ -+..|+.+. ...+.|...|+ |-+....+++-||-|.+.-+. .+
T Consensus 421 L~~eGg~eFK~~~Vdaisd~---~~~~p~skE-----------raLe~LC~fIE--Dcey~~I~vrIL~iLG~EgP~a~~ 484 (898)
T COG5240 421 LLQEGGLEFKKYMVDAISDA---MENDPDSKE-----------RALEVLCTFIE--DCEYHQITVRILGILGREGPRAKT 484 (898)
T ss_pred HHhcccchHHHHHHHHHHHH---HhhCchHHH-----------HHHHHHHHHHh--hcchhHHHHHHHHHhcccCCCCCC
Confidence 34455568888888887654 344555443 23455667775 344455566777777764332 22
Q ss_pred -hccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHH
Q 037612 532 -TRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYI 606 (663)
Q Consensus 532 -~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~l 606 (663)
.+.|..+..-+-=.+.-|+..|..||++|+-+-+-. ....-..-.|-+.|...|..+...|..+|-++
T Consensus 485 P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~-------~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 485 PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV-------VSPQSVENALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc-------ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhh
Confidence 234555554443355668888999999998543311 11122233556677777777888888888777
No 121
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=84.76 E-value=2.1 Score=48.64 Aligned_cols=95 Identities=13% Similarity=0.042 Sum_probs=76.4
Q ss_pred HHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCc--chHHHHHcCchHHHHHhhccCC
Q 037612 166 DAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPE--SVEHMIHSGVCLVFAKILKEGP 243 (663)
Q Consensus 166 ~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~--~~~~iv~aGaIp~Lv~lL~s~~ 243 (663)
-+...+.|+...-..-+.-..+.|.|..|++++.+-+...|.+..|.|.++--+.+ .+-.....-++..++++..++.
T Consensus 450 ~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc 529 (743)
T COG5369 450 PDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPC 529 (743)
T ss_pred cchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcc
Confidence 33444555444333446677888999999999998889999999999999995443 3556677788999999999999
Q ss_pred hhHHHHHHHHHHHHhcC
Q 037612 244 MKVQAVVAWAVSELAGN 260 (663)
Q Consensus 244 ~~vq~~Aa~aL~nLA~~ 260 (663)
-.||++.-..|.|+..+
T Consensus 530 ~~vq~q~lQilrNftc~ 546 (743)
T COG5369 530 FKVQHQVLQILRNFTCD 546 (743)
T ss_pred cccHHHHHHHHHhcccc
Confidence 99999999999999874
No 122
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=84.51 E-value=2 Score=41.50 Aligned_cols=101 Identities=17% Similarity=0.174 Sum_probs=71.6
Q ss_pred HhccCCCHHHHHHHHHHHHHhhcCChhhHHHHH-hcCChHHHHHhhc--cCChHHHHHHHHHHHHhcCCCcchHHHHHcC
Q 037612 154 ILYTAGSLEHKSDAAASLVSLARDNDRYGKLII-EEGGVGPLLKLVK--EGKPEGQENAARAIGLLGRDPESVEHMIHSG 230 (663)
Q Consensus 154 ~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Iv-e~G~Ip~Lv~LL~--sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aG 230 (663)
++.. ++.+.+..+..+|..|=-..+.-...|. .+|.++.++.+.. +.+...|..++.+| +-|..+++++..+...
T Consensus 51 ~~~~-~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell-~aAc~d~~~r~~I~~~ 128 (157)
T PF11701_consen 51 LLDE-GEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELL-SAACIDKSCRTFISKN 128 (157)
T ss_dssp HHCC-HHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHH-HHHTTSHHHHHCCHHH
T ss_pred HHcc-ccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHH-HHHHccHHHHHHHHHH
Confidence 4455 5666788887777777655555555554 6788999999998 55677777777776 5566667777777777
Q ss_pred chHHHHHhhcc-CChh-HHHHHHHHHHH
Q 037612 231 VCLVFAKILKE-GPMK-VQAVVAWAVSE 256 (663)
Q Consensus 231 aIp~Lv~lL~s-~~~~-vq~~Aa~aL~n 256 (663)
+++.|-++++. .+.. ++..|+-+|..
T Consensus 129 ~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 129 YVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 89999999964 4455 78888877764
No 123
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=84.48 E-value=4 Score=39.19 Aligned_cols=73 Identities=23% Similarity=0.336 Sum_probs=65.2
Q ss_pred hHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhhHHHHHHHHHHHHHHhhhcC
Q 037612 14 QLADQVVKAADEATSMKQDCAELKSKTEKLAALLRQAARASSDLYERPTRRIIDDTEQVLEKALSLVIKYRANG 87 (663)
Q Consensus 14 ~l~~~v~~~~~~~~~f~~~~~~i~~k~~~l~~~L~~~~~~~~~~~~~p~~~l~~~~~~tl~~a~~l~~~C~~~~ 87 (663)
+|.+.|+.++..+..|+.-...+.+-++.|.-...+.-... +.-++|-++.+....++++++..|+.+|.+.+
T Consensus 17 eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~-~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~ 89 (147)
T PF05659_consen 17 ELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLN-VELDRPRQEEIERLKELLEKGKELVEKCSKVR 89 (147)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHh-hhcCCchhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 56788999999999999999999999999998888877776 67788879999999999999999999998765
No 124
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.19 E-value=16 Score=42.85 Aligned_cols=172 Identities=16% Similarity=0.144 Sum_probs=112.5
Q ss_pred cHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhh
Q 037612 446 ALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLAR 525 (663)
Q Consensus 446 al~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~ 525 (663)
.++.|+.+|.+.+...++-|-.||..|+... ++.-.+.+- +.| ....++.+++++++.++.+...++ +|+-.
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs---a~~lds~~~-~rp-l~~mipkfl~f~~h~spkiRs~A~---~cvNq 200 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDS---AQFLDSDVL-TRP-LNIMIPKFLQFFKHPSPKIRSHAV---GCVNQ 200 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhh---HHHHhhhcc-cCc-hHHhHHHHHHHHhCCChhHHHHHH---hhhhh
Confidence 5789999999999999999999999998443 343333232 223 346788899999999888876654 44432
Q ss_pred ch-------hhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHH-cCCHHHHHHHHhcCChhHHH
Q 037612 526 TF-------KATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIIS-AGGAKHLVQLVYFGEQIVQL 597 (663)
Q Consensus 526 ~~-------~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~-~ggi~~Lv~LL~~~~~~~q~ 597 (663)
-. -..-...+.-|..|-.+.+++|++..+.||.-+.-. +++ +.+-. .+-|+.+.+.-+..++.+-.
T Consensus 201 ~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev----r~d--kl~phl~~IveyML~~tqd~dE~VAL 274 (885)
T KOG2023|consen 201 FIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV----RPD--KLVPHLDNIVEYMLQRTQDVDENVAL 274 (885)
T ss_pred eeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh----cHH--hcccchHHHHHHHHHHccCcchhHHH
Confidence 11 111123577788888999999999999999888521 111 11111 12344566666666776777
Q ss_pred HHHHHHHHHhcCCCChHHHHhc---cchhhhhhccccc
Q 037612 598 SALVLLCYIALHVPDSEDLAQA---EVLTVLEWTSKQS 632 (663)
Q Consensus 598 ~Al~~L~~la~~~~~~~~i~~~---~vl~~L~~~~~~~ 632 (663)
.|.....-+|.+. .-+++.+. ..+|+|..+..+.
T Consensus 275 EACEFwla~aeqp-i~~~~L~p~l~kliPvLl~~M~Ys 311 (885)
T KOG2023|consen 275 EACEFWLALAEQP-ICKEVLQPYLDKLIPVLLSGMVYS 311 (885)
T ss_pred HHHHHHHHHhcCc-CcHHHHHHHHHHHHHHHHccCccc
Confidence 7888777776655 54444433 5788886544443
No 125
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=83.22 E-value=21 Score=38.46 Aligned_cols=132 Identities=25% Similarity=0.263 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhc--CChhhhHHHhhhccHHHHHHHhhcCCh--hHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhH
Q 037612 420 KAMAARALWHLAK--GNSPICRSITESRALLCFAVLLEKGPE--DVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACK 495 (663)
Q Consensus 420 k~~Aa~AL~~La~--gn~~~~~~I~esgal~~L~~LL~~~~~--~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~ 495 (663)
+.-|++++.-|+- |.......|.+ ...+.|.+.+..+.. .++..|+.||.-++-....+.+--.. +.
T Consensus 103 ~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~--------~~ 173 (309)
T PF05004_consen 103 QALAARALALLALTLGAGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEE--------LM 173 (309)
T ss_pred HHHHHHHHHHHhhhcCCCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHH--------HH
Confidence 4455555544443 43345555554 356788888887654 45556677777665444333221110 00
Q ss_pred hHHHHHHHHh-hhc-----------CcchhhHHHHHHHHhhhchhhH--h---hccHHHHHHhcccCCHHHHHHHHHHHH
Q 037612 496 AVVDQLFRII-EKA-----------DSDLLIPCIKAVGNLARTFKAT--E---TRMIVPLVKLLDEREAEVSREASIALT 558 (663)
Q Consensus 496 ~vv~qL~~ll-~~~-----------~~~l~~~a~~aLg~La~~~~~~--e---~~~I~pLV~LL~~~~~~v~~eAa~AL~ 558 (663)
...+-++.+. .+. ++.+...|+.+-+-|.++.... . ...+|.|+.+|++.+.+|+..|..+|+
T Consensus 174 ~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiA 253 (309)
T PF05004_consen 174 ESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIA 253 (309)
T ss_pred HHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 1222222211 111 1357788888888888776652 1 347999999999999999999998887
Q ss_pred hc
Q 037612 559 KF 560 (663)
Q Consensus 559 ~l 560 (663)
=+
T Consensus 254 ll 255 (309)
T PF05004_consen 254 LL 255 (309)
T ss_pred HH
Confidence 55
No 126
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=81.74 E-value=10 Score=40.31 Aligned_cols=108 Identities=12% Similarity=0.057 Sum_probs=81.1
Q ss_pred hHHHHHH-HHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC-C-Ccc
Q 037612 146 CLIWEQV-AILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR-D-PES 222 (663)
Q Consensus 146 ~~v~~li-~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~-~-~~~ 222 (663)
.++..+| .-+++ .+...|+.|..+|+-.+--+.+.. ...++.+...++.++..++..|..+|+.|.. + .+.
T Consensus 26 ~ll~~lI~P~v~~-~~~~vR~~al~cLGl~~Lld~~~a-----~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQS-SDPAVRELALKCLGLCCLLDKELA-----KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 4455555 47788 899999999999999887644221 2347889999988889999999999999984 2 122
Q ss_pred hHH-------HHHcCchHHHHHhhccCChhHHHHHHHHHHHHhc
Q 037612 223 VEH-------MIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAG 259 (663)
Q Consensus 223 ~~~-------iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~ 259 (663)
-.. .-....+..|.+.|.+.+++++..++..++.|--
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 111 2234577888888888888999999999999764
No 127
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=81.14 E-value=84 Score=33.81 Aligned_cols=115 Identities=24% Similarity=0.271 Sum_probs=79.1
Q ss_pred chhhHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHh--cCChHHHHHhhccCChHHHHHHHHHHHHhcC
Q 037612 141 NEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIE--EGGVGPLLKLVKEGKPEGQENAARAIGLLGR 218 (663)
Q Consensus 141 ~~~i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive--~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~ 218 (663)
.+.+.--+.+.|..|.. .+...|+.|...|..+....- ..+.|-+ .-.+..+.+.++.|+..-+.-|+.++.-|+.
T Consensus 38 ~~~~e~~L~~~Id~l~e-K~~~~Re~aL~~l~~~l~~~~-~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~l 115 (309)
T PF05004_consen 38 QEDLEDKLKEAIDLLTE-KSSSTREAALEALIRALSSRY-LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLAL 115 (309)
T ss_pred hhHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhh
Confidence 44444445677888888 888999999999999875422 2223321 2368899999999987777788888888874
Q ss_pred C---CcchHHHHHcCchHHHHHhhccCChh--HHHHHHHHHHHHh
Q 037612 219 D---PESVEHMIHSGVCLVFAKILKEGPMK--VQAVVAWAVSELA 258 (663)
Q Consensus 219 ~---~~~~~~iv~aGaIp~Lv~lL~s~~~~--vq~~Aa~aL~nLA 258 (663)
. .+....+++ ...|+|.+++.+++.. ++..++.+|+-++
T Consensus 116 tlg~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~ 159 (309)
T PF05004_consen 116 TLGAGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICT 159 (309)
T ss_pred hcCCCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHH
Confidence 3 355566665 4899999999887543 4444554555544
No 128
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.22 E-value=1.4e+02 Score=35.73 Aligned_cols=107 Identities=20% Similarity=0.247 Sum_probs=69.9
Q ss_pred ccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhc-CChhHHHHHHHHHHHHhcCCC
Q 037612 533 RMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYF-GEQIVQLSALVLLCYIALHVP 611 (663)
Q Consensus 533 ~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~-~~~~~q~~Al~~L~~la~~~~ 611 (663)
+.+..|-++|++++..++--|...++++++.+ ++...+..- ...++..|+. .|.-+...|+++|.-+ ..+.
T Consensus 329 ~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~------~s~davK~h-~d~Ii~sLkterDvSirrravDLLY~m-cD~~ 400 (938)
T KOG1077|consen 329 RAVNQLGQFLSHRETNIRYLALESMCKLASSE------FSIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAM-CDVS 400 (938)
T ss_pred HHHHHHHHHhhcccccchhhhHHHHHHHHhcc------chHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHH-hchh
Confidence 45666677888898888888888999998764 233333333 6677888884 4665677799988766 6777
Q ss_pred ChHHHHhccchhhhhhccccccccccCCcHHHHHHHHHHHHhhh
Q 037612 612 DSEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLELYQ 655 (663)
Q Consensus 612 ~~~~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~le~~~ 655 (663)
|.+.|++ +.+.-|+-+.- . --+++.-|+-..-|.|-
T Consensus 401 Nak~IV~-elLqYL~tAd~-s------ireeivlKvAILaEKyA 436 (938)
T KOG1077|consen 401 NAKQIVA-ELLQYLETADY-S------IREEIVLKVAILAEKYA 436 (938)
T ss_pred hHHHHHH-HHHHHHhhcch-H------HHHHHHHHHHHHHHHhc
Confidence 7777773 44555552111 1 12456666666666664
No 129
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=80.22 E-value=6.8 Score=45.38 Aligned_cols=77 Identities=13% Similarity=0.239 Sum_probs=44.7
Q ss_pred cCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHH
Q 037612 508 ADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQL 587 (663)
Q Consensus 508 ~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~L 587 (663)
+++..+.-|+.=|.--...|+..+...|-.+++|..+.+..|+..|...|-.+|.+. +++...|+ ..|+||
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~----~~~v~kva-----DvL~Ql 104 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN----PEHVSKVA-----DVLVQL 104 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHH-----HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH----HHHHhHHH-----HHHHHH
Confidence 345555556555555566677666677777777777777778888888877776442 35555544 367777
Q ss_pred HhcCCh
Q 037612 588 VYFGEQ 593 (663)
Q Consensus 588 L~~~~~ 593 (663)
|.+.++
T Consensus 105 L~tdd~ 110 (556)
T PF05918_consen 105 LQTDDP 110 (556)
T ss_dssp TT---H
T ss_pred HhcccH
Confidence 776654
No 130
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=79.49 E-value=14 Score=44.22 Aligned_cols=104 Identities=18% Similarity=0.147 Sum_probs=83.4
Q ss_pred HhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchH
Q 037612 145 LCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVE 224 (663)
Q Consensus 145 ~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~ 224 (663)
+-.+..+..-|+. .+.+.|..|.+.|..| ++ + + +. .-.++|+.+++..+++.+++.|+-|+++|=. -.+.
T Consensus 91 lLavNti~kDl~d-~N~~iR~~AlR~ls~l-~~-~---e-l~-~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~ 160 (757)
T COG5096 91 LLAVNTIQKDLQD-PNEEIRGFALRTLSLL-RV-K---E-LL-GNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKD 160 (757)
T ss_pred HHHHHHHHhhccC-CCHHHHHHHHHHHHhc-Ch-H---H-HH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHh
Confidence 3344666778888 8999999998888876 22 1 2 22 2468999999999999999999999999863 4456
Q ss_pred HHHHcCchHHHHHhhccCChhHHHHHHHHHHHHh
Q 037612 225 HMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELA 258 (663)
Q Consensus 225 ~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA 258 (663)
...+.|.+-.+..++.+.+|.|...|..+|..+-
T Consensus 161 l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 161 LYHELGLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred hhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 6778899999999999999999998888888875
No 131
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=78.55 E-value=18 Score=44.43 Aligned_cols=116 Identities=17% Similarity=0.132 Sum_probs=88.6
Q ss_pred HHHHHHHHHhhcCChhhHHHHH----hcCChHHHHHhhccC-ChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhh
Q 037612 165 SDAAASLVSLARDNDRYGKLII----EEGGVGPLLKLVKEG-KPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKIL 239 (663)
Q Consensus 165 ~~AA~~L~~La~~~~~~~~~Iv----e~G~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL 239 (663)
.-+..+|.||.+.++.-..... =.|-.+-+..+|.+. ++.+|.-|...+..+..+.+....|+..|.+..|..+|
T Consensus 1743 ~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lL 1822 (2235)
T KOG1789|consen 1743 LMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLL 1822 (2235)
T ss_pred HHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHH
Confidence 4567789998877763322221 236677888888865 58999999999988889999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhc
Q 037612 240 KEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLA 282 (663)
Q Consensus 240 ~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~ 282 (663)
.|. |..++.+...|..|+++. +.-.+-.+.|++--+..++-
T Consensus 1823 HS~-PS~R~~vL~vLYAL~S~~-~i~keA~~hg~l~yil~~~c 1863 (2235)
T KOG1789|consen 1823 HSQ-PSMRARVLDVLYALSSNG-QIGKEALEHGGLMYILSILC 1863 (2235)
T ss_pred hcC-hHHHHHHHHHHHHHhcCc-HHHHHHHhcCchhhhhHHHh
Confidence 885 467889999999999754 54444456676666666553
No 132
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=77.70 E-value=19 Score=37.84 Aligned_cols=90 Identities=17% Similarity=0.087 Sum_probs=69.8
Q ss_pred HHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhcc-CChHHHHHHHHHHHHhcC-CCcchHHHHHcCchHHHHHhhccC
Q 037612 165 SDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKE-GKPEGQENAARAIGLLGR-DPESVEHMIHSGVCLVFAKILKEG 242 (663)
Q Consensus 165 ~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~s-g~~~~q~~Aa~AL~nLs~-~~~~~~~iv~aGaIp~Lv~lL~s~ 242 (663)
..|...|--++--++..|....+..++..|++||+. ..+.+|..+..+|..+-. ++.|.+..-+.+|+..++.++++.
T Consensus 109 ~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~ 188 (257)
T PF08045_consen 109 ALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSK 188 (257)
T ss_pred HHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccc
Confidence 345555555555567789999999999999999954 468999999999988884 789999999999999999999875
Q ss_pred C--hhHHHHHHHHH
Q 037612 243 P--MKVQAVVAWAV 254 (663)
Q Consensus 243 ~--~~vq~~Aa~aL 254 (663)
. .+++-...+-|
T Consensus 189 ~~~~~~r~K~~EFL 202 (257)
T PF08045_consen 189 STDRELRLKCIEFL 202 (257)
T ss_pred cccHHHhHHHHHHH
Confidence 4 34444444433
No 133
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.67 E-value=5.4 Score=42.64 Aligned_cols=89 Identities=15% Similarity=0.094 Sum_probs=66.4
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhC
Q 037612 192 GPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQH 271 (663)
Q Consensus 192 p~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~ 271 (663)
.-||+||.+.+|.+++.|..-|.++++.......--+.-.++.+.+++...++ -+.|+.+|.|++. .++.|..+...
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-~~~l~~~ll~~ 82 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ-KEELRKKLLQD 82 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh-hHHHHHHHHHH
Confidence 35789999999999999999999998762222222234578889999987665 5789999999997 56778777766
Q ss_pred CcHHHHHHHhccC
Q 037612 272 NIIRLLVGHLAFE 284 (663)
Q Consensus 272 g~I~~LV~LL~sg 284 (663)
.+..++..+-..
T Consensus 83 -~~k~l~~~~~~p 94 (353)
T KOG2973|consen 83 -LLKVLMDMLTDP 94 (353)
T ss_pred -HHHHHHHHhcCc
Confidence 677777766543
No 134
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=77.41 E-value=8 Score=44.43 Aligned_cols=126 Identities=21% Similarity=0.282 Sum_probs=84.1
Q ss_pred HHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHH-hhhcCcchhhHHHHHHHHhhhchhhH
Q 037612 452 VLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRI-IEKADSDLLIPCIKAVGNLARTFKAT 530 (663)
Q Consensus 452 ~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~l-l~~~~~~l~~~a~~aLg~La~~~~~~ 530 (663)
.|+.+.++-++++.+.++.---.+..+ -++|..|+.. +.+++++++..|+.|||-+.-.
T Consensus 523 ell~d~ds~lRy~G~fs~alAy~GTgn----------------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~---- 582 (926)
T COG5116 523 ELLYDKDSILRYNGVFSLALAYVGTGN----------------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD---- 582 (926)
T ss_pred HHhcCchHHhhhccHHHHHHHHhcCCc----------------chhHhhhheeecccCchHHHHHHHHheeeeEec----
Confidence 556666667777776665321122221 2356666666 7788899999999999977532
Q ss_pred hhccHHHHHHhcc-cCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 037612 531 ETRMIVPLVKLLD-EREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIAL 608 (663)
Q Consensus 531 e~~~I~pLV~LL~-~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~ 608 (663)
+...++..|++|+ +-++-|+.-.|.||+=+|.+. .+++ ++..|=.|++....-+...|++++.-+..
T Consensus 583 D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~----G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 583 DRDLLVGTVELLSESHNFHVRAGVAVALGIACAGT----GDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred CcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCC----ccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHh
Confidence 2346777888885 558889999999998776442 1222 45667778887766565568887776643
No 135
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=77.28 E-value=1.2e+02 Score=33.50 Aligned_cols=130 Identities=18% Similarity=0.234 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhH
Q 037612 418 YMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAV 497 (663)
Q Consensus 418 ~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~v 497 (663)
.++..|..+|..++-.|++. +.++||+..|...+-.+.-++....++++..+-. +|..|+. +.+. --
T Consensus 123 ~lr~~cletL~El~l~~P~l---v~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd----~p~tR~y-l~~~-----~d 189 (371)
T PF14664_consen 123 RLRRICLETLCELALLNPEL---VAECGGIRVLLRALIDGSFSISESLLDTLLYLLD----SPRTRKY-LRPG-----FD 189 (371)
T ss_pred HHHHHHHHHHHHHHhhCHHH---HHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC----Ccchhhh-hcCC-----cc
Confidence 47889999999999866554 6789999999988887777788899999988853 4555553 2221 12
Q ss_pred HHHHHHHhhhc-------Cc--chhhHHHHHHHHhhhchh------hHhhccHHHHHHhcccCCHHHHHHHHHHHHhc
Q 037612 498 VDQLFRIIEKA-------DS--DLLIPCIKAVGNLARTFK------ATETRMIVPLVKLLDEREAEVSREASIALTKF 560 (663)
Q Consensus 498 v~qL~~ll~~~-------~~--~l~~~a~~aLg~La~~~~------~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~l 560 (663)
++.++.-+.+. +. +....+..++..+=++.. ....+++.-||+.|.-..+++++....-|..+
T Consensus 190 L~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dl 267 (371)
T PF14664_consen 190 LESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDL 267 (371)
T ss_pred HHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34444444433 12 345667777777666533 23337899999999999999988877777544
No 136
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.06 E-value=24 Score=40.03 Aligned_cols=138 Identities=21% Similarity=0.276 Sum_probs=95.9
Q ss_pred ChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCC
Q 037612 412 DPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNA 491 (663)
Q Consensus 412 d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~ 491 (663)
||. ++.+.+|++-|++.+.|-++-++.-...--....-.|...-+.+|+-++..+|-.+....+ +.+++- .|.
T Consensus 269 dp~--a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~-~~~l~~-~~l--- 341 (533)
T KOG2032|consen 269 DPS--AKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS-NDDLES-YLL--- 341 (533)
T ss_pred Cch--hHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh-hcchhh-hch---
Confidence 554 3789999999999999988877764433333333455556678999999999877765544 334332 333
Q ss_pred chhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhc--------hhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcc
Q 037612 492 PACKAVVDQLFRIIEKADSDLLIPCIKAVGNLART--------FKATETRMIVPLVKLLDEREAEVSREASIALTKFA 561 (663)
Q Consensus 492 ~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~--------~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la 561 (663)
.+..++..+.++.+++....+....|.|+.- |...-++...||+-.|.+.++++.. |+.+...++
T Consensus 342 ----~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~~~c 414 (533)
T KOG2032|consen 342 ----NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSELRTC 414 (533)
T ss_pred ----hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHHHhc
Confidence 3567899999999999999999999999862 2222234566777778888887764 455555554
No 137
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=76.11 E-value=22 Score=39.74 Aligned_cols=112 Identities=17% Similarity=0.085 Sum_probs=79.5
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhcCChhh-------------HHHHHhcCChHHHHHhhccCChHHHHHHHHHHHH
Q 037612 149 WEQVAILYTAGSLEHKSDAAASLVSLARDNDRY-------------GKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGL 215 (663)
Q Consensus 149 ~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~-------------~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~n 215 (663)
..++..| ++.+....||..+.-|..+.+.. |+.+. .-.+|+|++-.++.+...+.+-..||.+
T Consensus 274 ~~L~~lL---~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F-~~~~p~L~~~~~~~~~~~k~~yL~ALs~ 349 (415)
T PF12460_consen 274 DKLLELL---SSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF-TQVLPKLLEGFKEADDEIKSNYLTALSH 349 (415)
T ss_pred HHHHHHh---CChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH-HHHHHHHHHHHhhcChhhHHHHHHHHHH
Confidence 3344444 33556778888888888763322 33332 2459999999998777789999999999
Q ss_pred hcCCCcchHHHHH-cCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhH
Q 037612 216 LGRDPESVEHMIH-SGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKC 264 (663)
Q Consensus 216 Ls~~~~~~~~iv~-aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~ 264 (663)
|-.+-.....+-+ .-.+|.|++-|..++.+++..+..+|..+....++.
T Consensus 350 ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~ 399 (415)
T PF12460_consen 350 LLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPEL 399 (415)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHH
Confidence 9975332222222 448899999999999999999999999998765443
No 138
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=75.71 E-value=44 Score=37.33 Aligned_cols=115 Identities=21% Similarity=0.210 Sum_probs=84.5
Q ss_pred CCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhH---h--------------hccHHHHHHhcccCCHHHHH
Q 037612 489 PNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKAT---E--------------TRMIVPLVKLLDEREAEVSR 551 (663)
Q Consensus 489 ~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~---e--------------~~~I~pLV~LL~~~~~~v~~ 551 (663)
.++|.+...++.|+.++.+ +++-..++++++-|...+... + ..++|+|++-..+.+.+.+.
T Consensus 264 R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~ 341 (415)
T PF12460_consen 264 RGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKS 341 (415)
T ss_pred cCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHH
Confidence 4567777788999999976 677888999999997763321 1 13599999999988888888
Q ss_pred HHHHHHHhcccCCCCCChhhHHHHHHc-CCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 037612 552 EASIALTKFACSDNYLHSDHSKAIISA-GGAKHLVQLVYFGEQIVQLSALVLLCYIALHV 610 (663)
Q Consensus 552 eAa~AL~~la~~~~~~~~~~~~~Iv~~-ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~ 610 (663)
....||+.+..+- + ..-.+-+. .=+|.|++=|..+++.++..++..|..+..+.
T Consensus 342 ~yL~ALs~ll~~v----P-~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 342 NYLTALSHLLKNV----P-KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHhhC----C-HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 9999999997431 1 12223333 34566677788888888888999998886555
No 139
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=75.31 E-value=12 Score=43.37 Aligned_cols=92 Identities=15% Similarity=0.195 Sum_probs=60.2
Q ss_pred cCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccH
Q 037612 456 KGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMI 535 (663)
Q Consensus 456 ~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I 535 (663)
+|+...|.-||.-|... -.+=|+++. ..++.+++|.+++|..++..|++.|..+++.-...-.+++
T Consensus 33 kg~~k~K~Laaq~I~kf---fk~FP~l~~-----------~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kva 98 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKF---FKHFPDLQE-----------EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVA 98 (556)
T ss_dssp GS-HHHHHHHHHHHHHH---HCC-GGGHH-----------HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHH
T ss_pred cCCHHHHHHHHHHHHHH---HhhChhhHH-----------HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHH
Confidence 35677788777775433 233344443 3578889999998989999999999999886544446789
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHhcc
Q 037612 536 VPLVKLLDEREAEVSREASIALTKFA 561 (663)
Q Consensus 536 ~pLV~LL~~~~~~v~~eAa~AL~~la 561 (663)
.-|++||.+.++.....+-.+|..+.
T Consensus 99 DvL~QlL~tdd~~E~~~v~~sL~~ll 124 (556)
T PF05918_consen 99 DVLVQLLQTDDPVELDAVKNSLMSLL 124 (556)
T ss_dssp HHHHHHTT---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999888777777777776664
No 140
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=75.23 E-value=47 Score=39.72 Aligned_cols=175 Identities=15% Similarity=0.157 Sum_probs=111.1
Q ss_pred ccccHHHHHHHHHhh--hcchHHHHhhccccCCCCccccCCCCcccchhhHhHHHHHHHHhccCC-CHHHHHHHHHHHHH
Q 037612 97 PAAAFRKMSSQLENS--IGDVSWLLRVSASAEDRDDEYLGLPPIAANEPILCLIWEQVAILYTAG-SLEHKSDAAASLVS 173 (663)
Q Consensus 97 ~~~~l~~l~~~L~~~--~~~~~~ll~~s~~~~~~~~~~~~~p~ia~~~~i~~~v~~li~~L~~~G-~~e~k~~AA~~L~~ 173 (663)
..++++-+..+.--. .+.+.|---+.. ...+|.=.+-+.+.++ ...++. . ..-....+..+|.|
T Consensus 502 k~~~~~aLlrl~~~q~e~akl~~~~aL~~--------~i~f~~~~~~~v~~~~----~s~~~~-d~~~~en~E~L~altn 568 (748)
T KOG4151|consen 502 KPGGYEALLRLGQQQFEEAKLKWYHALAG--------KIDFPGERSYEVVKPL----DSALHN-DEKGLENFEALEALTN 568 (748)
T ss_pred cccHHHHHHHHHHHhchHHHHHHHHHHhh--------hcCCCCCchhhhhhhh----cchhhh-hHHHHHHHHHHHHhhc
Confidence 557787777776332 334555432221 1122222334444444 333333 2 23345678889999
Q ss_pred hhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCC-cchHHHHH-cCchHHHHHhhccCChhHHHHHH
Q 037612 174 LARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDP-ESVEHMIH-SGVCLVFAKILKEGPMKVQAVVA 251 (663)
Q Consensus 174 La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~-~~~~~iv~-aGaIp~Lv~lL~s~~~~vq~~Aa 251 (663)
|++.++.-|..|.++=+++-+=.++...++..|..|+..+.||..++ -+.+.+++ .-..+.....+...+....-.+|
T Consensus 569 Las~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a 648 (748)
T KOG4151|consen 569 LASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGA 648 (748)
T ss_pred ccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhcc
Confidence 99988888888988877777666777778999999999999999765 45666776 66777777777776666666777
Q ss_pred HHHHHHhcCChhHHH-HHHhCCcHHHHHHHhccC
Q 037612 252 WAVSELAGNYPKCQD-LFAQHNIIRLLVGHLAFE 284 (663)
Q Consensus 252 ~aL~nLA~~~~~~r~-~i~~~g~I~~LV~LL~sg 284 (663)
+++..++..+..+.. ...-...-..++.++.++
T Consensus 649 ~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~ 682 (748)
T KOG4151|consen 649 GALAAITSVVENHCSRILELLEWLEILVRAIQDE 682 (748)
T ss_pred ccccchhhcchhhhhhHHHhhcchHHHHHhhcCc
Confidence 777766654444433 222233445555555544
No 141
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=75.15 E-value=93 Score=38.27 Aligned_cols=105 Identities=14% Similarity=0.234 Sum_probs=70.1
Q ss_pred hccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcC-cchhhHHHHHHHH
Q 037612 444 SRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKAD-SDLLIPCIKAVGN 522 (663)
Q Consensus 444 sgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~-~~l~~~a~~aLg~ 522 (663)
.+.+.|+.--|.+...-|++.++.+|..++.... .+ +...+++.|++=+.... ......-+..|+.
T Consensus 173 ~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~--~~-----------ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~ 239 (1233)
T KOG1824|consen 173 LSILKCLLPQLQSPRLAVRKKAITALGHLASSCN--RD-----------LYVELIEHLLKGLSNRTQMSATRTYIQCLAA 239 (1233)
T ss_pred HHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC--HH-----------HHHHHHHHHHhccCCCCchHHHHHHHHHHHH
Confidence 4456677777788888999999999988864442 12 22446666666665443 3344445566677
Q ss_pred hhhc----hhhHhhccHHHHHHhc---ccCCHHHHHHHHHHHHhcc
Q 037612 523 LART----FKATETRMIVPLVKLL---DEREAEVSREASIALTKFA 561 (663)
Q Consensus 523 La~~----~~~~e~~~I~pLV~LL---~~~~~~v~~eAa~AL~~la 561 (663)
+++. |.+.-.+++|.+.+.. ++.+.+.++....||.-|.
T Consensus 240 i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl 285 (1233)
T KOG1824|consen 240 ICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFL 285 (1233)
T ss_pred HHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHH
Confidence 7664 3333356888888888 7888888887777775553
No 142
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=74.74 E-value=1.2e+02 Score=35.46 Aligned_cols=141 Identities=16% Similarity=0.157 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhc-----cHHHH-------hh-
Q 037612 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEK-----DAELR-------RS- 485 (663)
Q Consensus 419 lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~-----~~~~r-------r~- 485 (663)
+.-.+|+++..|+..|..-+. -.-.+..|-.+|++.....|..|...|.+|+-..-+ |+++- |.
T Consensus 280 V~lE~Ar~v~~~~~~nv~~~~---~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~I 356 (898)
T COG5240 280 VFLEAARAVCALSEENVGSQF---VDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTI 356 (898)
T ss_pred hhHHHHHHHHHHHHhccCHHH---HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccc
Confidence 456678888888776532221 122455677778888888888888888777632211 11111 00
Q ss_pred -------hcCC-CCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhc-ccCCHHHHHHHHHH
Q 037612 486 -------AFKP-NAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLL-DEREAEVSREASIA 556 (663)
Q Consensus 486 -------a~~~-~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL-~~~~~~v~~eAa~A 556 (663)
.+|+ ++--.-..+.++..++.+-++..++.++.|+-+|+-.|+....-++.-|...| +++..+-++.++.|
T Consensus 357 styAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vda 436 (898)
T COG5240 357 STYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDA 436 (898)
T ss_pred hHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 0010 00001114455556666667899999999999999999988777888887766 78888888888888
Q ss_pred HHhccc
Q 037612 557 LTKFAC 562 (663)
Q Consensus 557 L~~la~ 562 (663)
+.....
T Consensus 437 isd~~~ 442 (898)
T COG5240 437 ISDAME 442 (898)
T ss_pred HHHHHh
Confidence 876653
No 143
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=73.68 E-value=31 Score=39.70 Aligned_cols=137 Identities=19% Similarity=0.188 Sum_probs=102.2
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCh----HHHHHHHHHHHHhcCCCcc
Q 037612 147 LIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKP----EGQENAARAIGLLGRDPES 222 (663)
Q Consensus 147 ~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~----~~q~~Aa~AL~nLs~~~~~ 222 (663)
++..+..++.+ |+...|..|...|.+++.+ .......+...|+..|..+..+|+. .......+|+..|-.+.-.
T Consensus 84 ~a~~i~e~l~~-~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvv 161 (713)
T KOG2999|consen 84 YAKRIMEILTE-GNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVV 161 (713)
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhcee
Confidence 45566789999 9999999999999999876 6678888889999999999998864 4555566666666544444
Q ss_pred hHHHHHcCchHHHHHhhcc--CChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCc
Q 037612 223 VEHMIHSGVCLVFAKILKE--GPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFET 285 (663)
Q Consensus 223 ~~~iv~aGaIp~Lv~lL~s--~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt 285 (663)
....+...+|...+.+.+- -+..+-..|...|-++..+++.-++.+.++--|..|+.+|..++
T Consensus 162 sW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n 226 (713)
T KOG2999|consen 162 SWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSN 226 (713)
T ss_pred eeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcc
Confidence 4555555555555555532 23456667777788888777788899999999999999998654
No 144
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=73.61 E-value=22 Score=35.73 Aligned_cols=92 Identities=16% Similarity=0.173 Sum_probs=64.1
Q ss_pred ChHHHHHhhccC------ChHHHHHHHHHHHHhcCCCcchHHHHHcC--c--hHHHHHhhccCChhHHHHHHHHHHHHhc
Q 037612 190 GVGPLLKLVKEG------KPEGQENAARAIGLLGRDPESVEHMIHSG--V--CLVFAKILKEGPMKVQAVVAWAVSELAG 259 (663)
Q Consensus 190 ~Ip~Lv~LL~sg------~~~~q~~Aa~AL~nLs~~~~~~~~iv~aG--a--Ip~Lv~lL~s~~~~vq~~Aa~aL~nLA~ 259 (663)
.+..|++++..| ...-...-+..+.||+..++.|+.+.+.. . |..|+-...+.+..=+.-++.+|.|++=
T Consensus 53 ~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccF 132 (192)
T PF04063_consen 53 YLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCF 132 (192)
T ss_pred HHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhc
Confidence 588888888762 23456678899999999999999998543 3 4555555566666667779999999996
Q ss_pred CChhHHHHHHh---CCcHHHHHHHhc
Q 037612 260 NYPKCQDLFAQ---HNIIRLLVGHLA 282 (663)
Q Consensus 260 ~~~~~r~~i~~---~g~I~~LV~LL~ 282 (663)
+. +....+.. .+.+|.|+--|.
T Consensus 133 d~-~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 133 DT-DSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred cH-hHHHHhcCchhhhhHHHHHhhcc
Confidence 44 33344433 356666655554
No 145
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.71 E-value=1.7e+02 Score=33.09 Aligned_cols=113 Identities=15% Similarity=0.150 Sum_probs=82.8
Q ss_pred HHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC---CCcc-------hHHHHHcCchHHHHH
Q 037612 168 AASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR---DPES-------VEHMIHSGVCLVFAK 237 (663)
Q Consensus 168 A~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~---~~~~-------~~~iv~aGaIp~Lv~ 237 (663)
...+-.+|.- +.-.-.+++..+|+.|+.||...+.++-....--|..|.- ..++ ..++|+.++|+.||+
T Consensus 105 IQ~mhvlAt~-PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvq 183 (536)
T KOG2734|consen 105 IQEMHVLATM-PDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQ 183 (536)
T ss_pred HHHHHhhhcC-hHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHH
Confidence 3455567766 4445677899999999999999888888888888888873 1222 457889999999999
Q ss_pred hhccCChhHHHHH------HHHHHHHhcCChhHHHHHHhCCcHHHHHHHh
Q 037612 238 ILKEGPMKVQAVV------AWAVSELAGNYPKCQDLFAQHNIIRLLVGHL 281 (663)
Q Consensus 238 lL~s~~~~vq~~A------a~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL 281 (663)
-+..=+..+++.+ ...+-|+..-.+.+-..+++.|.+.-|+.=+
T Consensus 184 nveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl 233 (536)
T KOG2734|consen 184 NVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRL 233 (536)
T ss_pred HHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHH
Confidence 9976555555544 4556777777778888888888777776633
No 146
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=71.99 E-value=13 Score=44.00 Aligned_cols=96 Identities=20% Similarity=0.223 Sum_probs=60.0
Q ss_pred HHHHHHHH-hhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhccc-CCHHHHHHHHHHHHhcccCCCCCChhhHHH
Q 037612 497 VVDQLFRI-IEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDE-REAEVSREASIALTKFACSDNYLHSDHSKA 574 (663)
Q Consensus 497 vv~qL~~l-l~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~-~~~~v~~eAa~AL~~la~~~~~~~~~~~~~ 574 (663)
+|.+|+.+ +.+.+++++..|+.|||-+...-+ .-.|..|.+|++ -++-|+.-||.||+=+|.+. ....
T Consensus 555 air~lLh~aVsD~nDDVrRaAVialGFVl~~dp----~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGt-----G~~e- 624 (929)
T KOG2062|consen 555 AIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP----EQLPSTVSLLSESYNPHVRYGAAMALGIACAGT-----GLKE- 624 (929)
T ss_pred hHHHhhcccccccchHHHHHHHHHheeeEecCh----hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCC-----CcHH-
Confidence 34556655 667789999999999987643222 247778888864 48888889999998775332 1111
Q ss_pred HHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 037612 575 IISAGGAKHLVQLVYFGEQIVQLSALVLLCYIA 607 (663)
Q Consensus 575 Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la 607 (663)
+|..|=.|.+.+..-+...|++++.-+-
T Consensus 625 -----Ai~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 625 -----AINLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred -----HHHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 3334444444443324444777776554
No 147
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=71.76 E-value=9.2 Score=39.63 Aligned_cols=133 Identities=15% Similarity=0.115 Sum_probs=88.4
Q ss_pred hHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCCh--hhHHHHH---hcCChHHHHHh--------hc---cCChHHHH
Q 037612 144 ILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDND--RYGKLII---EEGGVGPLLKL--------VK---EGKPEGQE 207 (663)
Q Consensus 144 i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~--~~~~~Iv---e~G~Ip~Lv~L--------L~---sg~~~~q~ 207 (663)
-..|-|+....|+. +|...|.|++..=| .+-+.|. =.|.+.-.|-= .. .+...-|.
T Consensus 71 ~~~wwwd~l~~lRE--------nalV~laNisgqLdLs~~~e~I~~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqr 142 (257)
T PF12031_consen 71 EAEWWWDCLEQLRE--------NALVTLANISGQLDLSDYPESIARPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQR 142 (257)
T ss_pred hHHHHHHHHHHHhh--------cceEeeeeeeeeeecccCchHHHHHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHH
Confidence 34466777766666 88888888875322 1112221 01211111100 01 11246899
Q ss_pred HHHHHHHHhcCCCcchHHHHHcCc-------hHHHHHhhcc-CChhHHHHHHHHHHHHhcCChh-HHHHHHhCCcHHHHH
Q 037612 208 NAARAIGLLGRDPESVEHMIHSGV-------CLVFAKILKE-GPMKVQAVVAWAVSELAGNYPK-CQDLFAQHNIIRLLV 278 (663)
Q Consensus 208 ~Aa~AL~nLs~~~~~~~~iv~aGa-------Ip~Lv~lL~s-~~~~vq~~Aa~aL~nLA~~~~~-~r~~i~~~g~I~~LV 278 (663)
.|..+|..|+..+.|...|...|- +..|+++|.. +++..++.|...|.||+..+.. +|..-.+.+.|..||
T Consensus 143 laLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li 222 (257)
T PF12031_consen 143 LALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLI 222 (257)
T ss_pred HHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHH
Confidence 999999999999999888887774 4455666644 6788999999999999976544 556667789999999
Q ss_pred HHhccC
Q 037612 279 GHLAFE 284 (663)
Q Consensus 279 ~LL~sg 284 (663)
..++..
T Consensus 223 ~FiE~a 228 (257)
T PF12031_consen 223 AFIEDA 228 (257)
T ss_pred HHHHHH
Confidence 999754
No 148
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.81 E-value=34 Score=40.97 Aligned_cols=138 Identities=14% Similarity=0.233 Sum_probs=91.3
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhc--
Q 037612 449 CFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLART-- 526 (663)
Q Consensus 449 ~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~-- 526 (663)
+.-.||.+.++.|-..+|.+.|.++-..+ ....++.|++++++. .++++...+.|..++..
T Consensus 291 stkpLl~S~n~sVVmA~aql~y~lAP~~~----------------~~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~ 353 (968)
T KOG1060|consen 291 STKPLLQSRNPSVVMAVAQLFYHLAPKNQ----------------VTKIAKALVRLLRSN-REVQYVVLQNIATISIKRP 353 (968)
T ss_pred hccHHHhcCCcHHHHHHHhHHHhhCCHHH----------------HHHHHHHHHHHHhcC-CcchhhhHHHHHHHHhcch
Confidence 44456788888999999999998864331 134678899988753 46666666666666541
Q ss_pred --hhh---------------------------Hhhc---cHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHH
Q 037612 527 --FKA---------------------------TETR---MIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKA 574 (663)
Q Consensus 527 --~~~---------------------------~e~~---~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~ 574 (663)
|.. .+.+ +++-|-....+.+..+.-.|+.||+.||+.--
T Consensus 354 ~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~--------- 424 (968)
T KOG1060|consen 354 TLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIG--------- 424 (968)
T ss_pred hhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC---------
Confidence 110 1111 23333334456666778889999999984421
Q ss_pred HHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCC
Q 037612 575 IISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPD 612 (663)
Q Consensus 575 Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~ 612 (663)
=+..-++.-|++||++.+..+...|+..+-.|....|-
T Consensus 425 sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~ 462 (968)
T KOG1060|consen 425 SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPA 462 (968)
T ss_pred chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChH
Confidence 12344678899999999998888888888888655554
No 149
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=70.65 E-value=54 Score=41.15 Aligned_cols=51 Identities=27% Similarity=0.264 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHH
Q 037612 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEI 472 (663)
Q Consensus 419 lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i 472 (663)
.|..|.+-|..|++ ..+.++.=.+.+|.++.|++....+||..|..+|.++
T Consensus 439 tK~~ALeLl~~lS~---~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~ 489 (1431)
T KOG1240|consen 439 TKLAALELLQELST---YIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTEL 489 (1431)
T ss_pred hHHHHHHHHHHHhh---hcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 47788888888886 5566777788999999999999999999999998875
No 150
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=67.94 E-value=1.6e+02 Score=34.54 Aligned_cols=204 Identities=16% Similarity=0.147 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCch----
Q 037612 418 YMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPA---- 493 (663)
Q Consensus 418 ~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a---- 493 (663)
+++..|-..|-++-.=+-.--+.+.|.--.....+-+++.+++|...+.---+-||.- |.+.+.-- ..-|..|+
T Consensus 236 e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeE-eid~~~e~-~~~pe~p~qn~~ 313 (858)
T COG5215 236 ELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEE-EIDGEMED-KYLPEVPAQNHG 313 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH-HhhhHHHH-hhcccCchhhcc
Confidence 4576666666555432323333444444333445666788888887766443344421 11111111 11233443
Q ss_pred -----hHhHHHHHHHHhhhcCc----chhhHHHHHHHHhhhchhh-HhhccHHHHHHhc----ccCCHHHHHHHHHHHHh
Q 037612 494 -----CKAVVDQLFRIIEKADS----DLLIPCIKAVGNLARTFKA-TETRMIVPLVKLL----DEREAEVSREASIALTK 559 (663)
Q Consensus 494 -----~~~vv~qL~~ll~~~~~----~l~~~a~~aLg~La~~~~~-~e~~~I~pLV~LL----~~~~~~v~~eAa~AL~~ 559 (663)
.+.|++.|+.|++..++ +.--+...|=.||- -|.. .-..++.|..... ++.+-.-++.|+.|++.
T Consensus 314 fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLq-lfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGS 392 (858)
T COG5215 314 FARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQ-LFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGS 392 (858)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHH-HHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhh
Confidence 44588999999998542 23233322222321 2221 2245777766664 55666667789999999
Q ss_pred cccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCChHHHHhccchhhhhhccc
Q 037612 560 FACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVLEWTSK 630 (663)
Q Consensus 560 la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~~~~i~~~~vl~~L~~~~~ 630 (663)
.-.+.+ .+..-.|+ ...+|-+..+...+.--++..++|++..++.|+++. |--.+-++....+..
T Consensus 393 vm~gp~---~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~--i~p~~Hl~~~vsa~l 457 (858)
T COG5215 393 VMHGPC---EDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMI--ISPCGHLVLEVSASL 457 (858)
T ss_pred hhcCcc---HHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHh--cCccccccHHHHHHH
Confidence 987763 23333444 456777777776433324556999999998888763 223344444443333
No 151
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=67.74 E-value=57 Score=34.13 Aligned_cols=108 Identities=10% Similarity=0.092 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhhcCChhh-HHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHH-------H-cCch
Q 037612 162 EHKSDAAASLVSLARDNDRY-GKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMI-------H-SGVC 232 (663)
Q Consensus 162 e~k~~AA~~L~~La~~~~~~-~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv-------~-aGaI 232 (663)
-.|.-+...++.|.+.+|.. .+.+...++||-.++.++.|+...|.-|+..+..+-.++..-.-|- . .-.+
T Consensus 140 yLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L 219 (293)
T KOG3036|consen 140 YLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVL 219 (293)
T ss_pred HHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHH
Confidence 35778888999998866543 3345678999999999999999999999999999988765322111 0 1122
Q ss_pred H-HHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHh
Q 037612 233 L-VFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQ 270 (663)
Q Consensus 233 p-~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~ 270 (663)
. .+.++.+.+++.+-+.+..+..+|+. +|.+|.++..
T Consensus 220 ~kmv~~l~~~ps~RllKhviRcYlrLsd-nprar~aL~~ 257 (293)
T KOG3036|consen 220 GKMVFQLVSMPSPRLLKHVIRCYLRLSD-NPRARAALRS 257 (293)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcC-CHHHHHHHHh
Confidence 2 23344466889999999999999996 6888887753
No 152
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=66.88 E-value=94 Score=34.50 Aligned_cols=110 Identities=12% Similarity=0.100 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhc-cC---ChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHH
Q 037612 161 LEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVK-EG---KPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFA 236 (663)
Q Consensus 161 ~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~-sg---~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv 236 (663)
...=..|+..+..+..+.+..-..|.|.|.++.+++-+. .+ +.+.-..=-.+|..||.+.+..+.+.+.+.++.|.
T Consensus 123 ~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f 202 (379)
T PF06025_consen 123 PSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLF 202 (379)
T ss_pred hHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHH
Confidence 445567888888888777777778889999999999998 54 24555555578888999999999999999999999
Q ss_pred HhhccCCh-------hHHHHHHHHHHHHhcCChhHHHHHHh
Q 037612 237 KILKEGPM-------KVQAVVAWAVSELAGNYPKCQDLFAQ 270 (663)
Q Consensus 237 ~lL~s~~~-------~vq~~Aa~aL~nLA~~~~~~r~~i~~ 270 (663)
+++.+++- +.-...-.++-.|..+.|.-|..+.+
T Consensus 203 ~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 203 EIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID 243 (379)
T ss_pred HHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99987531 22223334455667777888777654
No 153
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.74 E-value=2.9e+02 Score=33.35 Aligned_cols=187 Identities=18% Similarity=0.169 Sum_probs=108.5
Q ss_pred hhcCChhHHHHHHHHHHHHhhhhhcc--HHHHhhhcCCCCc---------hhHhHHHHHHHHhhhcC----cchhhHHHH
Q 037612 454 LEKGPEDVQYNSAMALMEITAVAEKD--AELRRSAFKPNAP---------ACKAVVDQLFRIIEKAD----SDLLIPCIK 518 (663)
Q Consensus 454 L~~~~~~vq~~aa~AL~~i~a~a~~~--~~~rr~a~~~~~~---------a~~~vv~qL~~ll~~~~----~~l~~~a~~ 518 (663)
+++.+++|...+.--=+.||+- |.+ .+... ++.-..| +.+.|++-|++++.+.+ ++.--|+..
T Consensus 268 mks~~deValQaiEFWsticeE-EiD~~~e~~e-~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kA 345 (859)
T KOG1241|consen 268 MKSDNDEVALQAIEFWSTICEE-EIDLAIEYGE-AVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKA 345 (859)
T ss_pred HcCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHH
Confidence 3567777777765544445521 111 01111 2332222 45579999999999844 333444433
Q ss_pred HHHHhhhchhhHhhccHHHHHHh----cccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChh
Q 037612 519 AVGNLARTFKATETRMIVPLVKL----LDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQI 594 (663)
Q Consensus 519 aLg~La~~~~~~e~~~I~pLV~L----L~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~ 594 (663)
|=.||----......++||.... +++.+-.-+..|+.|++..-.+.+ ++.-+.|+ .+++|.++.++..++-.
T Consensus 346 Ag~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~---~~~Lt~iV-~qalp~ii~lm~D~sl~ 421 (859)
T KOG1241|consen 346 AGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPE---PDKLTPIV-IQALPSIINLMSDPSLW 421 (859)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCc---hhhhhHHH-hhhhHHHHHHhcCchhh
Confidence 33333211112234455555544 567788888889999998876543 44444555 67899999999855554
Q ss_pred HHHHHHHHHHHHhcCCCCh---HHHHhccchhhhhhccccccccccCCcHHHHHHHHHHHH
Q 037612 595 VQLSALVLLCYIALHVPDS---EDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLE 652 (663)
Q Consensus 595 ~q~~Al~~L~~la~~~~~~---~~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~le 652 (663)
+...+.+.|..++.+.++. .+.. ..+++.+.. .+.++|.+..=.|-|+.-|-
T Consensus 422 VkdTaAwtlgrI~d~l~e~~~n~~~l-~~~l~~l~~-----gL~DePrva~N~CWAf~~La 476 (859)
T KOG1241|consen 422 VKDTAAWTLGRIADFLPEAIINQELL-QSKLSALLE-----GLNDEPRVASNVCWAFISLA 476 (859)
T ss_pred hcchHHHHHHHHHhhchhhcccHhhh-hHHHHHHHH-----HhhhCchHHHHHHHHHHHHH
Confidence 5555999999999887742 2222 233333321 34456677666666666655
No 154
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=65.92 E-value=39 Score=35.92 Aligned_cols=117 Identities=18% Similarity=0.178 Sum_probs=77.0
Q ss_pred hHHHHHH-HHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccC-C-CCCChhhH
Q 037612 496 AVVDQLF-RIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACS-D-NYLHSDHS 572 (663)
Q Consensus 496 ~vv~qL~-~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~-~-~~~~~~~~ 572 (663)
+..+.|+ .-+++.++.++..++++||-.+---......-++.+.+.++.++..++..|..++.-+... | .+......
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 3444444 6777888899999999998766433333334588899999888999999999999877521 1 11100000
Q ss_pred --HHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCC
Q 037612 573 --KAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPD 612 (663)
Q Consensus 573 --~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~ 612 (663)
.......-++.+...|.+.++.+|.-|+..+|.|-++..-
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i 147 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRI 147 (298)
T ss_pred cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 0011223445666677777877899999999998655543
No 155
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=65.31 E-value=69 Score=36.52 Aligned_cols=126 Identities=15% Similarity=0.134 Sum_probs=87.9
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhhcCCh---hhHHHHHhcCChHHHHHhhccCC-----h--HHHHHHHHHHHHhcCCCc
Q 037612 152 VAILYTAGSLEHKSDAAASLVSLARDND---RYGKLIIEEGGVGPLLKLVKEGK-----P--EGQENAARAIGLLGRDPE 221 (663)
Q Consensus 152 i~~L~~~G~~e~k~~AA~~L~~La~~~~---~~~~~Ive~G~Ip~Lv~LL~sg~-----~--~~q~~Aa~AL~nLs~~~~ 221 (663)
..++.. .+++.|..|.--.-.+.+.+| .+|+.|.|+=|.+-|=+||.+++ + .-+.-+...|...+..++
T Consensus 17 ~~L~~~-k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 17 LKLLKG-KRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHhcc-cChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 334444 466777666554444555443 46889999999999999997643 2 234556667777777765
Q ss_pred --chHHHHHcCchHHHHHhhcc-CChh------HHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHh
Q 037612 222 --SVEHMIHSGVCLVFAKILKE-GPMK------VQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHL 281 (663)
Q Consensus 222 --~~~~iv~aGaIp~Lv~lL~s-~~~~------vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL 281 (663)
....|++ .||.|.+++.. ++++ +.+.+=.+|..+|.. +.....+...|+|+.+-.+-
T Consensus 96 lAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y 161 (698)
T KOG2611|consen 96 LASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMY 161 (698)
T ss_pred hccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHH
Confidence 3566665 69999999976 4555 778888899999976 55566666889999987653
No 156
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=64.78 E-value=13 Score=38.47 Aligned_cols=83 Identities=14% Similarity=0.139 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHHHHHhcCC-------hHHHHHhhccC-ChHHHHHHHHHHHHhcCCCcc-hHHHH-Hc
Q 037612 160 SLEHKSDAAASLVSLARDNDRYGKLIIEEGG-------VGPLLKLVKEG-KPEGQENAARAIGLLGRDPES-VEHMI-HS 229 (663)
Q Consensus 160 ~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~-------Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~~~~~-~~~iv-~a 229 (663)
...-|..|..+|..|+.. +.|.+.|...|- +..|+++|... ++..+|.|...|.||+..++. .+.+. +.
T Consensus 137 ~lSPqrlaLEaLcKLsV~-e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~ 215 (257)
T PF12031_consen 137 PLSPQRLALEALCKLSVI-ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQK 215 (257)
T ss_pred CCCHHHHHHHHHHHhhee-ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhh
Confidence 345678899999999865 788888887775 45677777654 688999999999999975444 43443 78
Q ss_pred CchHHHHHhhccCC
Q 037612 230 GVCLVFAKILKEGP 243 (663)
Q Consensus 230 GaIp~Lv~lL~s~~ 243 (663)
+.|..|+.++.+..
T Consensus 216 ~~i~~Li~FiE~a~ 229 (257)
T PF12031_consen 216 PCISHLIAFIEDAE 229 (257)
T ss_pred chHHHHHHHHHHHH
Confidence 99999999997654
No 157
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=64.12 E-value=82 Score=36.49 Aligned_cols=54 Identities=17% Similarity=0.345 Sum_probs=48.9
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCCh
Q 037612 191 VGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPM 244 (663)
Q Consensus 191 Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~ 244 (663)
...+.+++.+|+...|-.|..-|..++.+......++...++..|.++..+|+.
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~ 138 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRV 138 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCcc
Confidence 446778899999888888999999999999999999999999999999999874
No 158
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=63.33 E-value=96 Score=30.28 Aligned_cols=105 Identities=9% Similarity=0.043 Sum_probs=78.9
Q ss_pred HHHhccCCCH------HHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC--ChHHHHHHHHHHHHhcCCCcc-
Q 037612 152 VAILYTAGSL------EHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEG--KPEGQENAARAIGLLGRDPES- 222 (663)
Q Consensus 152 i~~L~~~G~~------e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg--~~~~q~~Aa~AL~nLs~~~~~- 222 (663)
+.++.. |+. +.-..+..++..|..++...|+ +.+..-|...+.++... ++.++..|..-|-++..++..
T Consensus 17 ~~~iE~-g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~l 94 (160)
T PF11841_consen 17 IKMIEE-GTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKL 94 (160)
T ss_pred HHHHHc-CCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHH
Confidence 666677 763 4445667778888877655675 55566778888888754 478999999999999976666
Q ss_pred hHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHh
Q 037612 223 VEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELA 258 (663)
Q Consensus 223 ~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA 258 (663)
...|-++=-++.|+..|+.+++++|..+..-+-.|=
T Consensus 95 y~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 95 YQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALF 130 (160)
T ss_pred HHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 555556777999999999999999999887666654
No 159
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=61.97 E-value=24 Score=39.97 Aligned_cols=100 Identities=19% Similarity=0.227 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHhcCChhhhH---HHhhhccHHHH-HHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcC-CC
Q 037612 416 KAYMKAMAARALWHLAKGNSPICR---SITESRALLCF-AVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFK-PN 490 (663)
Q Consensus 416 ~~~lk~~Aa~AL~~La~gn~~~~~---~I~esgal~~L-~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~-~~ 490 (663)
+.+++.+|-+||+|+..=-..... ..++.+.+.-+ -..+-.+.-.||-|+|.|+.|+-... +|+ -+
T Consensus 497 ~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~---------a~~lq~ 567 (728)
T KOG4535|consen 497 KDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNP---------ALPLQT 567 (728)
T ss_pred hhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCc---------cccccC
Confidence 356788899999877651110100 01111211111 11122345589999999999985322 342 23
Q ss_pred CchhHhHHHHHHHHhhhcC-cchhhHHHHHHHHhh
Q 037612 491 APACKAVVDQLFRIIEKAD-SDLLIPCIKAVGNLA 524 (663)
Q Consensus 491 ~~a~~~vv~qL~~ll~~~~-~~l~~~a~~aLg~La 524 (663)
.+-+.-+.+.|..++.+.. -.+.+.|+.+|.--+
T Consensus 568 ~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 568 APWASQAFNALTSLVTSCKNFKVRIRAAAALSVPG 602 (728)
T ss_pred CCchHHHHHHHHHHHHHhccceEeehhhhhhcCCC
Confidence 3445556666666665433 566666666665444
No 160
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=59.63 E-value=1.2e+02 Score=36.45 Aligned_cols=164 Identities=17% Similarity=0.263 Sum_probs=108.4
Q ss_pred HHHHHhcCChhhhHHHhhhccHHHHHHHhhc-CChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHH--HHH
Q 037612 426 ALWHLAKGNSPICRSITESRALLCFAVLLEK-GPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVD--QLF 502 (663)
Q Consensus 426 AL~~La~gn~~~~~~I~esgal~~L~~LL~~-~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~--qL~ 502 (663)
+||++...++.+|+.+.+.+|...|...++. ...+++...-.-+.+++...+.++..-- | .-++ -+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~--~--------~~~~~~~f~ 563 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMI--F--------EFIDFSVFK 563 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhH--H--------HHHHHHHHH
Confidence 9999999999999999999999999999995 4568899988888888876654322111 0 1111 122
Q ss_pred HHhhhcCc-chhhHHHHHHHHhhhc--------hhh---------------Hh-----hccHHH-HHHhcc-cCCHHHHH
Q 037612 503 RIIEKADS-DLLIPCIKAVGNLART--------FKA---------------TE-----TRMIVP-LVKLLD-EREAEVSR 551 (663)
Q Consensus 503 ~ll~~~~~-~l~~~a~~aLg~La~~--------~~~---------------~e-----~~~I~p-LV~LL~-~~~~~v~~ 551 (663)
.+..+++. +.-+.++.-|+.+-.. +++ .+ .+.+.| +-+++. ...+..+.
T Consensus 564 ~~~~~w~~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~l 643 (699)
T KOG3665|consen 564 VLLNKWDSIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQL 643 (699)
T ss_pred HHHhhcchhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHH
Confidence 34555554 6666666666655442 111 00 123556 666663 55666788
Q ss_pred HHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHH
Q 037612 552 EASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFG-EQIVQLSALVLL 603 (663)
Q Consensus 552 eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~-~~~~q~~Al~~L 603 (663)
-|.|++.++.... ++.++.+.+.||+..+..+-... ...++..+...+
T Consensus 644 Wal~ti~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 644 WALWTIKNVLEQN----KEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred HHHHHHHHHHHcC----hhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 8999999998543 46788899999999888863333 333444444433
No 161
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=59.60 E-value=83 Score=30.49 Aligned_cols=112 Identities=13% Similarity=0.130 Sum_probs=66.6
Q ss_pred hhHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcC--ChHHHHHhhccCC-hHHHHHHHHHHHHhc--
Q 037612 143 PILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEG--GVGPLLKLVKEGK-PEGQENAARAIGLLG-- 217 (663)
Q Consensus 143 ~i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G--~Ip~Lv~LL~sg~-~~~q~~Aa~AL~nLs-- 217 (663)
.+.-++-.+..+|++ .+.+.|..++.-+.-+...++ ++.+.+.| -+..|+..|+..+ +...+.|..+|..|-
T Consensus 22 ~l~~l~~ri~~LL~s-~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 22 ALHKLVTRINSLLQS-KSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHHHHHHHHhCC-CChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 344455556678888 787777666555555543322 56665655 3889999999765 677888888888776
Q ss_pred --CCCcchHHHHHc---CchHHHHHhhccCChhHHHHHHHHHHHHhc
Q 037612 218 --RDPESVEHMIHS---GVCLVFAKILKEGPMKVQAVVAWAVSELAG 259 (663)
Q Consensus 218 --~~~~~~~~iv~a---GaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~ 259 (663)
..++-.+.+..- +.|+.++++++. ....+.+..+|..+-.
T Consensus 99 ~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 99 IRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred hcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 345555555422 233334444433 3444555555555543
No 162
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=57.60 E-value=33 Score=39.65 Aligned_cols=96 Identities=20% Similarity=0.195 Sum_probs=61.8
Q ss_pred HHhhhcCcchhhHHHHHHHHhhhchhhH-hhccHHHHHHh-cccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCC
Q 037612 503 RIIEKADSDLLIPCIKAVGNLARTFKAT-ETRMIVPLVKL-LDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGG 580 (663)
Q Consensus 503 ~ll~~~~~~l~~~a~~aLg~La~~~~~~-e~~~I~pLV~L-L~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~gg 580 (663)
+++.+.|+-+...++-+++. .++.+ ..++|..|+.. .++++.+|++.|+.||+-.||.+. +.
T Consensus 523 ell~d~ds~lRy~G~fs~al---Ay~GTgn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~-------------~~ 586 (926)
T COG5116 523 ELLYDKDSILRYNGVFSLAL---AYVGTGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR-------------DL 586 (926)
T ss_pred HHhcCchHHhhhccHHHHHH---HHhcCCcchhHhhhheeecccCchHHHHHHHHheeeeEecCc-------------ch
Confidence 55555555565555444431 12221 13567777777 689999999999999999988762 23
Q ss_pred HHHHHHHHhc-CChhHHHHHHHHHHHHhcCCCChH
Q 037612 581 AKHLVQLVYF-GEQIVQLSALVLLCYIALHVPDSE 614 (663)
Q Consensus 581 i~~Lv~LL~~-~~~~~q~~Al~~L~~la~~~~~~~ 614 (663)
+.-.|+||.. ..+.+..-.+.+|...+.+.++..
T Consensus 587 lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~ 621 (926)
T COG5116 587 LVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV 621 (926)
T ss_pred hhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH
Confidence 4456666654 466666666777777777777644
No 163
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=56.69 E-value=8 Score=25.93 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHh
Q 037612 549 VSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVY 589 (663)
Q Consensus 549 v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~ 589 (663)
|+.+|+++|+++.. ..++++|+..|.
T Consensus 1 VR~~Aa~aLg~igd---------------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD---------------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S---------------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC---------------HHHHHHHHHHhc
Confidence 67899999999953 226788887764
No 164
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=56.48 E-value=40 Score=28.47 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC-ChHHHHHHHHHHHHhcCCCcchHHHHHcC
Q 037612 164 KSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEG-KPEGQENAARAIGLLGRDPESVEHMIHSG 230 (663)
Q Consensus 164 k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~~~~~~~~iv~aG 230 (663)
...|.++++++++. +.-...+-+.+.|+-++++-++. ...++--|-.+|+-+|...+..+.+-+.|
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 45788999999875 44455555678999999999865 47888899999999999888887776665
No 165
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=54.78 E-value=88 Score=39.24 Aligned_cols=117 Identities=18% Similarity=0.252 Sum_probs=86.7
Q ss_pred cCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhh-hcCcchhhHHHHHHHHhhhchhhHhhcc
Q 037612 456 KGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIE-KADSDLLIPCIKAVGNLARTFKATETRM 534 (663)
Q Consensus 456 ~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~-~~~~~l~~~a~~aLg~La~~~~~~e~~~ 534 (663)
.+++++|..|.-||..+..... --|.--.+-|+.+++ +++|.++..++-|+|-+|--|++.-...
T Consensus 934 ~sdp~Lq~AAtLaL~klM~iSa--------------~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~ 999 (1251)
T KOG0414|consen 934 FSDPELQAAATLALGKLMCISA--------------EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPW 999 (1251)
T ss_pred CCCHHHHHHHHHHHHHHhhhhH--------------HHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchh
Confidence 4567899988888876643321 112334567888898 5669999999999999999999755456
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhH
Q 037612 535 IVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIV 595 (663)
Q Consensus 535 I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~ 595 (663)
-+-|.+.|.+.++.|++.|...|+++-..+ .|-=.|-+.-+..++..+++.+
T Consensus 1000 T~~Ly~rL~D~~~~vRkta~lvlshLILnd---------miKVKGql~eMA~cl~D~~~~I 1051 (1251)
T KOG0414|consen 1000 TEHLYRRLRDESPSVRKTALLVLSHLILND---------MIKVKGQLSEMALCLEDPNAEI 1051 (1251)
T ss_pred hHHHHHHhcCccHHHHHHHHHHHHHHHHhh---------hhHhcccHHHHHHHhcCCcHHH
Confidence 677888899999999999999999997443 2233566677777777776643
No 166
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.75 E-value=1.2e+02 Score=34.30 Aligned_cols=132 Identities=15% Similarity=0.159 Sum_probs=92.4
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhhcCC---------hhhHHHHHhcCChHHHHHhhccCC------hHHHHHHHHHHH
Q 037612 150 EQVAILYTAGSLEHKSDAAASLVSLARDN---------DRYGKLIIEEGGVGPLLKLVKEGK------PEGQENAARAIG 214 (663)
Q Consensus 150 ~li~~L~~~G~~e~k~~AA~~L~~La~~~---------~~~~~~Ive~G~Ip~Lv~LL~sg~------~~~q~~Aa~AL~ 214 (663)
.++.+|.. .+.+.-..-..-|-.|...+ +.-...+++.++|+.||.-++.-+ ..+..++...+-
T Consensus 129 slL~LLgH-eNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vve 207 (536)
T KOG2734|consen 129 SLLELLGH-ENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLAVVE 207 (536)
T ss_pred HHHHHhcC-CCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHH
Confidence 34555555 55444444444444444221 123556778889999998886322 356777888888
Q ss_pred HhcC-CCcchHHHHHcCchHHHHHhhccC-C-hhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhc
Q 037612 215 LLGR-DPESVEHMIHSGVCLVFAKILKEG-P-MKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLA 282 (663)
Q Consensus 215 nLs~-~~~~~~~iv~aGaIp~Lv~lL~s~-~-~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~ 282 (663)
|+.. .++....+++.|-+..|.+-|... . ..-+..+...|+-+-.++.+++.....-++|-.|+.-|.
T Consensus 208 Nlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la 278 (536)
T KOG2734|consen 208 NLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLA 278 (536)
T ss_pred HHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcc
Confidence 9885 688899999999999998855432 2 345678889999998888889999999999888877553
No 167
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=54.60 E-value=76 Score=37.95 Aligned_cols=98 Identities=18% Similarity=0.202 Sum_probs=68.6
Q ss_pred HHhhhcCcchhhHHHHHHHHhhhchhhH-hhccHHHHHHh-cccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCC
Q 037612 503 RIIEKADSDLLIPCIKAVGNLARTFKAT-ETRMIVPLVKL-LDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGG 580 (663)
Q Consensus 503 ~ll~~~~~~l~~~a~~aLg~La~~~~~~-e~~~I~pLV~L-L~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~gg 580 (663)
+++.+.||-+...++-+++- -+..+ ..++|..|+.. .++.+.+|++.|+.||+-.++.+ +++
T Consensus 526 el~~dkdpilR~~Gm~t~al---Ay~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~d----p~~--------- 589 (929)
T KOG2062|consen 526 ELLRDKDPILRYGGMYTLAL---AYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD----PEQ--------- 589 (929)
T ss_pred HHhcCCchhhhhhhHHHHHH---HHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecC----hhh---------
Confidence 56666666676666554431 12221 13578888887 58999999999999999888765 232
Q ss_pred HHHHHHHHhcC-ChhHHHHHHHHHHHHhcCCCChHHH
Q 037612 581 AKHLVQLVYFG-EQIVQLSALVLLCYIALHVPDSEDL 616 (663)
Q Consensus 581 i~~Lv~LL~~~-~~~~q~~Al~~L~~la~~~~~~~~i 616 (663)
.+..|+||..+ ++.+..-|+.+|...+...++.+.|
T Consensus 590 ~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi 626 (929)
T KOG2062|consen 590 LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAI 626 (929)
T ss_pred chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHH
Confidence 34567777654 7777777999999888888887753
No 168
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=54.60 E-value=4.8e+02 Score=31.84 Aligned_cols=422 Identities=15% Similarity=0.113 Sum_probs=210.6
Q ss_pred hhhHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCc
Q 037612 142 EPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPE 221 (663)
Q Consensus 142 ~~i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~ 221 (663)
+++..-.+.++..|-.-.+...|.-+|.-+++++..- ...+...+.+|-++.|+......+++.|..++.++...-.
T Consensus 232 ~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~---~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~ 308 (759)
T KOG0211|consen 232 DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVL---ESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLD 308 (759)
T ss_pred HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHH---HHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcC
Confidence 4444444444444433157788999999999998652 3477788999999999998888999999999999885222
Q ss_pred chHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhH
Q 037612 222 SVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSI 301 (663)
Q Consensus 222 ~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl 301 (663)
... =+..-..+.+++...+++..+..+.+.....|...-.. .....--+++...+++... ....+++....
T Consensus 309 ~~~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~~~~~--~e~r~a~a~~~--- 379 (759)
T KOG0211|consen 309 DDD-DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLLKDEE--WEVRYAIAKKV--- 379 (759)
T ss_pred Cch-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHhcchh--hhhhHHhhcch---
Confidence 111 22334778899999998877777777766666542111 2223345677777776431 12223332111
Q ss_pred HHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccC
Q 037612 302 HAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNG 381 (663)
Q Consensus 302 ~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g 381 (663)
+-+.+..+..++ +.+ |...- =-.+...|.+.+- + .....+
T Consensus 380 ~~l~~~l~~~~~-------------------~~i--~~~~i-lp~~~~lv~d~~~-~-----------------vr~a~a 419 (759)
T KOG0211|consen 380 QKLACYLNASCY-------------------PNI--PDSSI-LPEVQVLVLDNAL-H-----------------VRSALA 419 (759)
T ss_pred HHHhhhcCcccc-------------------ccc--chhhh-hHHHHHHHhcccc-h-----------------HHHHHh
Confidence 111111010000 000 00000 0001111111000 0 000000
Q ss_pred CCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHH----HHhhcC
Q 037612 382 QDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFA----VLLEKG 457 (663)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~----~LL~~~ 457 (663)
. +.. ...|.. | ..+.-+.-.|.....+|........|+.. .........+.+|+.-+. ..+-.-
T Consensus 420 ~---~~~-~~~p~~------~-k~~ti~~llp~~~~~l~de~~~V~lnli~-~ls~~~~v~~v~g~~~~s~slLp~i~el 487 (759)
T KOG0211|consen 420 S---VIT-GLSPIL------P-KERTISELLPLLIGNLKDEDPIVRLNLID-KLSLLEEVNDVIGISTVSNSLLPAIVEL 487 (759)
T ss_pred c---ccc-ccCccC------C-cCcCccccChhhhhhcchhhHHHHHhhHH-HHHHHHhccCcccchhhhhhhhhhhhhh
Confidence 0 000 000110 0 11111222344434455555555555542 011112222222222111 111111
Q ss_pred ChhHHHHHHHHHHHH-hhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcC----cchhhHHHHHHHHhhhchhhH--
Q 037612 458 PEDVQYNSAMALMEI-TAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKAD----SDLLIPCIKAVGNLARTFKAT-- 530 (663)
Q Consensus 458 ~~~vq~~aa~AL~~i-~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~----~~l~~~a~~aLg~La~~~~~~-- 530 (663)
.++....+.+|+.+- -..+.+ .. ...|. +.+..++..+. ..+...|+..+-.++..|...
T Consensus 488 ~~d~~wRvr~ail~~ip~la~q-~~--~~~~~----------~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~ 554 (759)
T KOG0211|consen 488 AEDLLWRVRLAILEYIPQLALQ-LG--VEFFD----------EKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWA 554 (759)
T ss_pred ccchhHHHHHHHHHHHHHHHHh-hh--hHHhh----------HHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchh
Confidence 111122222222111 000000 00 00111 12333343333 245566666777777777732
Q ss_pred hhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 037612 531 ETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHV 610 (663)
Q Consensus 531 e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~ 610 (663)
....||-+.....+....++...+.++.-|+. -....|....=.+++++|...+.+.+..+++..|--+-...
T Consensus 555 ~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~-------v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L 627 (759)
T KOG0211|consen 555 RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAE-------VLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLL 627 (759)
T ss_pred HHHhhHHHHHHhcCcccchhhHHHHHHHHHHH-------HhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhc
Confidence 23468888877776678888888888887762 12345677778899999999999889999998886663211
Q ss_pred CChHHHHhccchhhhhhccccccccccCCcHHHHHHHHHHHHh
Q 037612 611 PDSEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLEL 653 (663)
Q Consensus 611 ~~~~~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~le~ 653 (663)
.....++.+.|.++.-.+ -|+..++-.+..|.+-+++
T Consensus 628 --~~~~~~~~v~pll~~L~~----d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 628 --DESVRDEEVLPLLETLSS----DQELDVRYRAILAFGSIEL 664 (759)
T ss_pred --chHHHHHHHHHHHHHhcc----CcccchhHHHHHHHHHHHH
Confidence 235566778888874222 3555666666666655443
No 169
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=54.29 E-value=5.5e+02 Score=32.39 Aligned_cols=111 Identities=16% Similarity=0.123 Sum_probs=71.9
Q ss_pred hhhHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCC-hHHHHHHHHHHHHhcCCC
Q 037612 142 EPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGK-PEGQENAARAIGLLGRDP 220 (663)
Q Consensus 142 ~~i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~-~~~q~~Aa~AL~nLs~~~ 220 (663)
+.+.+.+..|...|+. ++...|.-||.-++.+++..+ +..+ .-+|...++++...+ +..=..|..||..|+.-.
T Consensus 337 eivE~vie~Lls~l~d-~dt~VrWSaAKg~grvt~rlp--~~La--d~vi~svid~~~p~e~~~aWHgacLaLAELA~rG 411 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSD-TDTVVRWSAAKGLGRVTSRLP--PELA--DQVIGSVIDLFNPAEDDSAWHGACLALAELALRG 411 (1133)
T ss_pred HHHHHHHHHHHHhccC-CcchhhHHHHHHHHHHHccCc--HHHH--HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC
Confidence 3455777888889999 999999999999999998755 3332 346777777776554 555568999999998521
Q ss_pred -cchHHHHHcCchHHHHHhhcc----C----ChhHHHHHHHHHHHHhc
Q 037612 221 -ESVEHMIHSGVCLVFAKILKE----G----PMKVQAVVAWAVSELAG 259 (663)
Q Consensus 221 -~~~~~iv~aGaIp~Lv~lL~s----~----~~~vq~~Aa~aL~nLA~ 259 (663)
--...+. -++|.+++-|.= | ...|+..|+-.+..++.
T Consensus 412 lLlps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~R 457 (1133)
T KOG1943|consen 412 LLLPSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFAR 457 (1133)
T ss_pred CcchHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHh
Confidence 1111111 256677766631 1 13456666655555553
No 170
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=53.38 E-value=80 Score=36.68 Aligned_cols=103 Identities=20% Similarity=0.264 Sum_probs=68.4
Q ss_pred HhHHHHHHHHhhhcC----cchhhHHHHHHHHhhhchhhHh--------hccHHHHHHhcc----cCCHHHHHHHHHHHH
Q 037612 495 KAVVDQLFRIIEKAD----SDLLIPCIKAVGNLARTFKATE--------TRMIVPLVKLLD----EREAEVSREASIALT 558 (663)
Q Consensus 495 ~~vv~qL~~ll~~~~----~~l~~~a~~aLg~La~~~~~~e--------~~~I~pLV~LL~----~~~~~v~~eAa~AL~ 558 (663)
+..++.+..++++.. +.+...|+.++|+|.+..+... ...+++|.+.|. +++.+...-+..||+
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 457777888887642 4577889999999998766533 236788888774 356666667888999
Q ss_pred hcccCCCCCChhhHHHHHHcCCHHHHHHHHh-cC--ChhHHHHHHHHHHHHhcCCCC
Q 037612 559 KFACSDNYLHSDHSKAIISAGGAKHLVQLVY-FG--EQIVQLSALVLLCYIALHVPD 612 (663)
Q Consensus 559 ~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~-~~--~~~~q~~Al~~L~~la~~~~~ 612 (663)
|+.+.. .++.|...+. .. ++.++..|+.+|..++.+.+.
T Consensus 472 N~g~~~---------------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~ 513 (574)
T smart00638 472 NAGHPS---------------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR 513 (574)
T ss_pred ccCChh---------------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch
Confidence 886432 3344554444 11 334677788888877654443
No 171
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=53.27 E-value=3.3e+02 Score=31.80 Aligned_cols=158 Identities=16% Similarity=0.100 Sum_probs=81.5
Q ss_pred HHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhc----CChhHHHHHHHHHHHHhhhhhccH-HHHhhhcCCCCchhHh
Q 037612 422 MAARALWHLAKGNSPICRSITESRALLCFAVLLEK----GPEDVQYNSAMALMEITAVAEKDA-ELRRSAFKPNAPACKA 496 (663)
Q Consensus 422 ~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~----~~~~vq~~aa~AL~~i~a~a~~~~-~~rr~a~~~~~~a~~~ 496 (663)
.|+..|+.|......-... .+.-|..|+++ ....++.-|..++..+....-.+. ..... =........-
T Consensus 413 ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~-~~~~~~~~~~ 486 (618)
T PF01347_consen 413 EAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFC-DPCSRCIIEK 486 (618)
T ss_dssp HHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT------------SS--GG
T ss_pred HHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccc-cccchhhHHH
Confidence 3566677666533222222 23334444442 345677777777776642221110 00000 0001111223
Q ss_pred HHHHHHHHhh----hcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccC---CHHHHHHHHHHHHhcccCCCCCCh
Q 037612 497 VVDQLFRIIE----KADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDER---EAEVSREASIALTKFACSDNYLHS 569 (663)
Q Consensus 497 vv~qL~~ll~----~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~---~~~v~~eAa~AL~~la~~~~~~~~ 569 (663)
+++.|...+. .++.+.+..+++||||+.. ...|+.|+..+... +..++..|.+||.+++.. ++
T Consensus 487 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~----~~ 556 (618)
T PF01347_consen 487 YVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH----CP 556 (618)
T ss_dssp GTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-----H
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc----Cc
Confidence 4455554444 4456788899999999974 24788999888655 788999999999988632 12
Q ss_pred hhHHHHHHcCCHHHHHHHHhcCChhH--HHHHHHHH
Q 037612 570 DHSKAIISAGGAKHLVQLVYFGEQIV--QLSALVLL 603 (663)
Q Consensus 570 ~~~~~Iv~~ggi~~Lv~LL~~~~~~~--q~~Al~~L 603 (663)
+ . ..+.|+.+........ .+.|+.+|
T Consensus 557 ~---~-----v~~~l~~I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 557 E---K-----VREILLPIFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp H---H-----HHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred H---H-----HHHHHHHHhcCCCCChhHHHHHHHHH
Confidence 1 1 3457788777653334 44455444
No 172
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=53.00 E-value=14 Score=24.90 Aligned_cols=28 Identities=21% Similarity=0.231 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhc
Q 037612 548 EVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYF 590 (663)
Q Consensus 548 ~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~ 590 (663)
.|+.+|+++|+++.+.. ++++|++.|..
T Consensus 2 ~vR~~aa~aLg~~~~~~---------------a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGDEE---------------AVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCCHh---------------HHHHHHHHhcC
Confidence 47889999999995322 56777777653
No 173
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=52.76 E-value=83 Score=37.74 Aligned_cols=110 Identities=19% Similarity=0.209 Sum_probs=76.4
Q ss_pred hHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHh-hccHHHHHHhcccCCHHHHH-HHHHHHHhcccCCCCCChhhHH
Q 037612 496 AVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATE-TRMIVPLVKLLDEREAEVSR-EASIALTKFACSDNYLHSDHSK 573 (663)
Q Consensus 496 ~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e-~~~I~pLV~LL~~~~~~v~~-eAa~AL~~la~~~~~~~~~~~~ 573 (663)
+..+.|+++-....++-+.....||.. .-.|.... ...++|+-.++++.+..... |+..||+|+++..+ .+-.
T Consensus 504 ~~~~aLlrl~~~q~e~akl~~~~aL~~-~i~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~---s~r~- 578 (748)
T KOG4151|consen 504 GGYEALLRLGQQQFEEAKLKWYHALAG-KIDFPGERSYEVVKPLDSALHNDEKGLENFEALEALTNLASISE---SDRQ- 578 (748)
T ss_pred cHHHHHHHHHHHhchHHHHHHHHHHhh-hcCCCCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcch---hhHH-
Confidence 456778888887778877777777762 22344322 35799999998766533333 79999999997654 1223
Q ss_pred HHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 037612 574 AIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHV 610 (663)
Q Consensus 574 ~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~ 610 (663)
.|.+.-++.-+=.++...++..|..++.+++||..+.
T Consensus 579 ~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~ 615 (748)
T KOG4151|consen 579 KILKEKALGKIEELMTEENPALQRAALESIINLLWSP 615 (748)
T ss_pred HHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhH
Confidence 3887777766556666667767999999999996554
No 174
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=51.42 E-value=61 Score=37.92 Aligned_cols=103 Identities=15% Similarity=0.178 Sum_probs=62.9
Q ss_pred cHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhc----CcchhhHHHHHHH
Q 037612 446 ALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKA----DSDLLIPCIKAVG 521 (663)
Q Consensus 446 al~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~----~~~l~~~a~~aLg 521 (663)
++..+..++.++...- ..++..|+.+.... ..|+ +.+++.+..|+++. ++.+...|+.++|
T Consensus 396 av~~i~~~I~~~~~~~-~ea~~~l~~l~~~~----------~~Pt----~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~ 460 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTD-DEAAQLLASLPFHV----------RRPT----EELLKELFELAKSPKVKNSPYLRETALLSLG 460 (618)
T ss_dssp HHHHHHHHHHTT-S-H-HHHHHHHHHHHHT-------------------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCH-HHHHHHHHHHHhhc----------CCCC----HHHHHHHHHHHhCccccCChhHHHHHHHHHH
Confidence 3455666666644322 23556665554322 0122 45667677777643 3568889999999
Q ss_pred HhhhchhhHh--------------hccHHHHHHhcc----cCCHHHHHHHHHHHHhcccC
Q 037612 522 NLARTFKATE--------------TRMIVPLVKLLD----EREAEVSREASIALTKFACS 563 (663)
Q Consensus 522 ~La~~~~~~e--------------~~~I~pLV~LL~----~~~~~v~~eAa~AL~~la~~ 563 (663)
+|.+.++... ...++.|...|. .++.+.+.-+..||+|+...
T Consensus 461 ~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~ 520 (618)
T PF01347_consen 461 SLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP 520 (618)
T ss_dssp HHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G
T ss_pred HHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc
Confidence 9999877652 236888888875 45667777899999999643
No 175
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.09 E-value=65 Score=37.34 Aligned_cols=86 Identities=15% Similarity=0.158 Sum_probs=66.2
Q ss_pred ChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHH
Q 037612 190 GVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFA 269 (663)
Q Consensus 190 ~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~ 269 (663)
.|..|-+.|+.+..+.+..+..=+..|=....+.-........+.|.+-|++.+.+|...+...+++++.++ +..
T Consensus 337 ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~-~~~---- 411 (675)
T KOG0212|consen 337 IIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSS-NSP---- 411 (675)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCc-ccc----
Confidence 577888888887788888887777677666677777777888999999999999999999999999999643 332
Q ss_pred hCCcHHHHHHHhc
Q 037612 270 QHNIIRLLVGHLA 282 (663)
Q Consensus 270 ~~g~I~~LV~LL~ 282 (663)
|-++.+..||.
T Consensus 412 --~~~~fl~sLL~ 422 (675)
T KOG0212|consen 412 --NLRKFLLSLLE 422 (675)
T ss_pred --cHHHHHHHHHH
Confidence 34555555553
No 176
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.46 E-value=92 Score=37.46 Aligned_cols=138 Identities=19% Similarity=0.237 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhh-----hhccHHHH-------hh-
Q 037612 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAV-----AEKDAELR-------RS- 485 (663)
Q Consensus 419 lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~-----a~~~~~~r-------r~- 485 (663)
..-.||+|+-+|..-++..-. .++-.|--++.+...-+|+.|.++|.+++.. .-.|.|+- |+
T Consensus 261 V~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsI 335 (865)
T KOG1078|consen 261 VIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSI 335 (865)
T ss_pred HHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccch
Confidence 456789999887765443322 2677788888999999999999999887622 11122221 11
Q ss_pred -hcCCCCc-------hhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhc-ccCCHHHHHHHHHH
Q 037612 486 -AFKPNAP-------ACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLL-DEREAEVSREASIA 556 (663)
Q Consensus 486 -a~~~~~~-------a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL-~~~~~~v~~eAa~A 556 (663)
-+.++.= -.-..+.|+-.++..=+++.++..+.|+-+|+..|+...+.++.-|-++| +++..+-++....+
T Consensus 336 at~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~ 415 (865)
T KOG1078|consen 336 ATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDA 415 (865)
T ss_pred hHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHH
Confidence 0111000 00114455555565667999999999999999999998888999999998 56777778877777
Q ss_pred HHhcc
Q 037612 557 LTKFA 561 (663)
Q Consensus 557 L~~la 561 (663)
+....
T Consensus 416 Ii~ii 420 (865)
T KOG1078|consen 416 IIDII 420 (865)
T ss_pred HHHHH
Confidence 76654
No 177
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=44.51 E-value=1.2e+02 Score=28.88 Aligned_cols=107 Identities=12% Similarity=0.137 Sum_probs=73.1
Q ss_pred ccHHHHHHHHHh-hhcchHHH--HhhccccCCCCccccCCCCcccchhhHhHHHHHHHHhccCCCHHHHHHHHHHHHHhh
Q 037612 99 AAFRKMSSQLEN-SIGDVSWL--LRVSASAEDRDDEYLGLPPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLA 175 (663)
Q Consensus 99 ~~l~~l~~~L~~-~~~~~~~l--l~~s~~~~~~~~~~~~~p~ia~~~~i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La 175 (663)
+.|+.++.+..+ .+.+.+|- +.++..-... +....+.++.+ ..+|+. ++..+...|..-|-.+.
T Consensus 3 ~~~~~~I~kATs~~l~~~dw~~ileicD~In~~--------~~~~k~a~ral----~krl~~-~n~~vql~AL~LLe~~v 69 (142)
T cd03569 3 SEFDELIEKATSELLGEPDLASILEICDMIRSK--------DVQPKYAMRAL----KKRLLS-KNPNVQLYALLLLESCV 69 (142)
T ss_pred chHHHHHHHHcCcccCccCHHHHHHHHHHHhCC--------CCCHHHHHHHH----HHHHcC-CChHHHHHHHHHHHHHH
Confidence 456666666633 23334444 3444322211 12344555544 779999 99999999988888888
Q ss_pred cCC-hhhHHHHHhcCChHHHHHhhccC-ChHHHHHHHHHHHHhcC
Q 037612 176 RDN-DRYGKLIIEEGGVGPLLKLVKEG-KPEGQENAARAIGLLGR 218 (663)
Q Consensus 176 ~~~-~~~~~~Ive~G~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~ 218 (663)
.+. +.....|...+.+..|++++... ++.+++.....+.+-+.
T Consensus 70 kNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 70 KNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 763 55777888889999999999853 57899999888888874
No 178
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=43.75 E-value=41 Score=35.85 Aligned_cols=57 Identities=25% Similarity=0.244 Sum_probs=46.9
Q ss_pred hhHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCC--------------hhhHHHHHhcCChHHHHHhhcc
Q 037612 143 PILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDN--------------DRYGKLIIEEGGVGPLLKLVKE 200 (663)
Q Consensus 143 ~i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~--------------~~~~~~Ive~G~Ip~Lv~LL~s 200 (663)
.-..++..++..|.. ++.+.|..|+.+|.+++.+. ..|...+.+.|++++|+++|+.
T Consensus 57 ~~~~~i~~ll~~L~~-~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 57 QRKDFIEKLLDQLES-SDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred hHHHHHHHHHHhccc-cchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 334567778999999 99999999999999997653 1367788899999999999974
No 179
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=42.78 E-value=1.7e+02 Score=28.28 Aligned_cols=68 Identities=10% Similarity=0.194 Sum_probs=38.5
Q ss_pred hHHHHHhhccCC-hHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHh
Q 037612 191 VGPLLKLVKEGK-PEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELA 258 (663)
Q Consensus 191 Ip~Lv~LL~sg~-~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA 258 (663)
+..|++.|+..+ ...+..++.|+.++-.....+..-.=.-.||.+++++++.++..++.--.-|+.|.
T Consensus 88 i~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 88 INALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 556677666655 44445566666666633222222222347788888887666566666555555543
No 180
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=42.05 E-value=78 Score=37.66 Aligned_cols=134 Identities=19% Similarity=0.266 Sum_probs=95.8
Q ss_pred ccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhh-cCChhHHHHHHHHHHHHhhhhhccHHHHhhhc
Q 037612 409 ELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLE-KGPEDVQYNSAMALMEITAVAEKDAELRRSAF 487 (663)
Q Consensus 409 e~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~-~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~ 487 (663)
-+.|++ ++..|.-.|++|-.=+..-|. .-+|-|...++ +++|-++.||+-+|...+-. |
T Consensus 906 ~~sd~~----lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vc-----------f 965 (1128)
T COG5098 906 RFSDEE----LQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVC-----------F 965 (1128)
T ss_pred ccCCHH----HHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeecccccee-----------h
Confidence 356764 688888899887664445554 35788888888 67889999998887655311 1
Q ss_pred CCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCC
Q 037612 488 KPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDN 565 (663)
Q Consensus 488 ~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~ 565 (663)
.. .+..--+.|.+-+.+.+..++..|...+..|--.-.-.-+|-.|-++.+|.+.++++..-|-.-++.+|..+|
T Consensus 966 N~---~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdN 1040 (1128)
T COG5098 966 NT---TADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDN 1040 (1128)
T ss_pred hh---hhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhccc
Confidence 11 0122346788888888888999999998877321111224668999999999999999999888888987765
No 181
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=41.36 E-value=1.6e+02 Score=30.79 Aligned_cols=82 Identities=21% Similarity=0.304 Sum_probs=52.7
Q ss_pred HhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChh--HHHHHHHHHHHHh
Q 037612 530 TETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQI--VQLSALVLLCYIA 607 (663)
Q Consensus 530 ~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~--~q~~Al~~L~~la 607 (663)
++.+..|||+++++..+..+-.-. +-+.+.+ ....-+.+-.|-+.+|.+++..++.. ++..|+.+|..++
T Consensus 70 re~~A~~~li~l~~~~~~~~~~l~----GD~~tE~----l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~ 141 (249)
T PF06685_consen 70 REERALPPLIRLFSQDDDFLEDLF----GDFITED----LPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLV 141 (249)
T ss_pred hhhhhHHHHHHHHcCCcchHHHHH----cchhHhH----HHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 357899999999976654222111 1111111 11233456678899999999888443 5777999999998
Q ss_pred cCCCC-hHHHHhc
Q 037612 608 LHVPD-SEDLAQA 619 (663)
Q Consensus 608 ~~~~~-~~~i~~~ 619 (663)
.+.+. ++++.+.
T Consensus 142 ~~~~~~Re~vi~~ 154 (249)
T PF06685_consen 142 HEGPISREEVIQY 154 (249)
T ss_pred HcCCCCHHHHHHH
Confidence 77777 4555544
No 182
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=40.15 E-value=1.5e+02 Score=32.63 Aligned_cols=92 Identities=17% Similarity=0.150 Sum_probs=66.9
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhc-cCCh-HHHHHHHHHHHHhcCCCcchHH
Q 037612 148 IWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVK-EGKP-EGQENAARAIGLLGRDPESVEH 225 (663)
Q Consensus 148 v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~-sg~~-~~q~~Aa~AL~nLs~~~~~~~~ 225 (663)
|.+++..|....+...|..++-.|..-+.+ +..+..+.+.|.+..+++.+. .++. ..-..++.+++-|+.+..+-..
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 344566666513667899999999998875 778999999999999999994 4444 4555555566666666666666
Q ss_pred HHHcCchHHHHHhhc
Q 037612 226 MIHSGVCLVFAKILK 240 (663)
Q Consensus 226 iv~aGaIp~Lv~lL~ 240 (663)
+-+.+....++++|.
T Consensus 102 ~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLK 116 (361)
T ss_pred hhchhHHHHHHHHhc
Confidence 667777777788887
No 183
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=39.21 E-value=89 Score=31.35 Aligned_cols=69 Identities=14% Similarity=0.082 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHhc--CC--hHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchH
Q 037612 164 KSDAAASLVSLARDNDRYGKLIIEE--GG--VGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCL 233 (663)
Q Consensus 164 k~~AA~~L~~La~~~~~~~~~Ive~--G~--Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp 233 (663)
-..-|..|.|+++. +.-|+.+.+. +. |..|+-+.++.+..-+..++.+|.|.|-+.+....+.....+.
T Consensus 75 ~~yla~vl~NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~ 147 (192)
T PF04063_consen 75 YDYLASVLANLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVD 147 (192)
T ss_pred hhHHHHHHHHhcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhh
Confidence 35678899999986 6778888864 34 6777777777788888999999999999888888877644333
No 184
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=39.14 E-value=36 Score=31.01 Aligned_cols=41 Identities=12% Similarity=0.308 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHH
Q 037612 207 ENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQ 247 (663)
Q Consensus 207 ~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq 247 (663)
..+...+..||..|+--..+++.|+++.|+.||.....++.
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 34566788999999999999999999999999988776653
No 185
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=39.04 E-value=2.3e+02 Score=28.75 Aligned_cols=87 Identities=15% Similarity=0.183 Sum_probs=53.3
Q ss_pred CchHHHHHHhhHHhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhhHHHHHHHHHHHH
Q 037612 1 MADKVKQILAKPIQLADQVVKAADEATSMKQDCAELKSKTEKLAALLRQAARASSDLYERPTRRIIDDTEQVLEKALSLV 80 (663)
Q Consensus 1 ~~~~~~~~l~~~~~l~~~v~~~~~~~~~f~~~~~~i~~k~~~l~~~L~~~~~~~~~~~~~p~~~l~~~~~~tl~~a~~l~ 80 (663)
|++.|+.++...-+.+.+ -+..||.||+-|+.-...|+..+.- .+ .-++.|-..-+..|+.+|+..-.++
T Consensus 24 Md~sv~~l~~~~~e~~kk------~~~~~KkEyqkiG~af~~LsqaF~~---d~-~~~s~~L~~Av~~tg~~y~~IG~~f 93 (207)
T cd07670 24 MDESVLQLNHTANEFARK------QVTGFKKEYQKVGQSFKGLSQAFEL---DQ-QAFSAGLNQAIAFTGEAYEAIGELF 93 (207)
T ss_pred HHHHHHHHHHHHHHHHHH------HhccccHHHHHHHHHHHHHHHHHcc---CC-cccchHHHHHHHHHHHHHHHHHHHH
Confidence 455556555555444433 2467999999999888888776641 00 1233344566666777777754444
Q ss_pred HHhhhcCcccccceecccccHHHHHHHHHh
Q 037612 81 IKYRANGIIKRVFTIIPAAAFRKMSSQLEN 110 (663)
Q Consensus 81 ~~C~~~~~~~r~~~i~~~~~l~~l~~~L~~ 110 (663)
. +. |.-|+.++...|..
T Consensus 94 a---eQ----------pk~Dl~Pl~d~L~~ 110 (207)
T cd07670 94 A---EQ----------PRQDLDPVMDLLAL 110 (207)
T ss_pred H---hc----------chhhhHHHHHHHHH
Confidence 3 33 55578888877764
No 186
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=39.00 E-value=1.2e+02 Score=33.27 Aligned_cols=92 Identities=16% Similarity=0.145 Sum_probs=69.0
Q ss_pred hHHHHHhhccC-ChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhcc-CChhHHHHHHHHHHHHhcCChhHHHHH
Q 037612 191 VGPLLKLVKEG-KPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKE-GPMKVQAVVAWAVSELAGNYPKCQDLF 268 (663)
Q Consensus 191 Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s-~~~~vq~~Aa~aL~nLA~~~~~~r~~i 268 (663)
|.-+++=|+++ +...+..++.-|..-+.+++.++.+...|.+..+++.+.. ++..+-..++.++..+-..+...-..+
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 44555555644 4788999999999999999999999999999999999955 444366666666666655454555556
Q ss_pred HhCCcHHHHHHHhc
Q 037612 269 AQHNIIRLLVGHLA 282 (663)
Q Consensus 269 ~~~g~I~~LV~LL~ 282 (663)
...+.+..++.||.
T Consensus 103 ~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 103 LDRDSLRLLLKLLK 116 (361)
T ss_pred hchhHHHHHHHHhc
Confidence 67777888888887
No 187
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=38.74 E-value=1.7e+02 Score=28.24 Aligned_cols=71 Identities=13% Similarity=0.119 Sum_probs=51.2
Q ss_pred hccHHHHHHhcc---------cCCHHHHHHHHHHHHhcccCCCCCChhhHHHH-HHcCCHHHHHHHHhcCChhHHHHHHH
Q 037612 532 TRMIVPLVKLLD---------EREAEVSREASIALTKFACSDNYLHSDHSKAI-ISAGGAKHLVQLVYFGEQIVQLSALV 601 (663)
Q Consensus 532 ~~~I~pLV~LL~---------~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~I-v~~ggi~~Lv~LL~~~~~~~q~~Al~ 601 (663)
.+|+..|+++|. ..+.+...++..+|..+..+ ......+ -..+++..|+..|.+.+..+...++.
T Consensus 106 ~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~-----~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~le 180 (187)
T PF06371_consen 106 LGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNT-----KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALE 180 (187)
T ss_dssp HHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSS-----HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHcc-----HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHH
Confidence 468888888872 24557788889998888743 2344544 45889999999999988888888888
Q ss_pred HHHHHh
Q 037612 602 LLCYIA 607 (663)
Q Consensus 602 ~L~~la 607 (663)
+|..++
T Consensus 181 iL~~lc 186 (187)
T PF06371_consen 181 ILAALC 186 (187)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887765
No 188
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=36.12 E-value=1.6e+02 Score=25.84 Aligned_cols=55 Identities=20% Similarity=0.138 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhh
Q 037612 418 YMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITA 474 (663)
Q Consensus 418 ~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a 474 (663)
.++..+..-|.+|....+ +..+...+.+..|...|+..++-|--+|..+|..++.
T Consensus 18 PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 18 PVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred chHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 468999999999998766 5566667888889999999999999999999887753
No 189
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=34.80 E-value=3.6e+02 Score=31.29 Aligned_cols=90 Identities=21% Similarity=0.288 Sum_probs=55.7
Q ss_pred hHHHHHHHHhh----hcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcc---cCCHHHHHHHHHHHHhcccCCCCCC
Q 037612 496 AVVDQLFRIIE----KADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLD---EREAEVSREASIALTKFACSDNYLH 568 (663)
Q Consensus 496 ~vv~qL~~ll~----~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~---~~~~~v~~eAa~AL~~la~~~~~~~ 568 (663)
..++.|.+.+. ..+.+.+.-+++||||+.. ...|+.|...+. ..+..++..|.+||.+++...
T Consensus 442 ~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~---- 511 (574)
T smart00638 442 ELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRD---- 511 (574)
T ss_pred HHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhC----
Confidence 34455555444 3455667889999999974 235666666664 345679999999999886321
Q ss_pred hhhHHHHHHcCCHHHHHHHHhcCChh--HHHHHHHHH
Q 037612 569 SDHSKAIISAGGAKHLVQLVYFGEQI--VQLSALVLL 603 (663)
Q Consensus 569 ~~~~~~Iv~~ggi~~Lv~LL~~~~~~--~q~~Al~~L 603 (663)
++ -.-+.|+.+....+.. +.+.|+..|
T Consensus 512 p~--------~v~~~l~~i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 512 PR--------KVQEVLLPIYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred ch--------HHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 11 1335677776665333 444455544
No 190
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=34.04 E-value=5.8e+02 Score=26.84 Aligned_cols=134 Identities=18% Similarity=0.119 Sum_probs=78.9
Q ss_pred HHHHHHHhhcCC----hhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcC-cchhhHHHHHHH
Q 037612 447 LLCFAVLLEKGP----EDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKAD-SDLLIPCIKAVG 521 (663)
Q Consensus 447 l~~L~~LL~~~~----~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~-~~l~~~a~~aLg 521 (663)
+|.|..-+++++ .+.-..+|.+|..+|...+ .+.+-| ++....++. -.-..-....+.
T Consensus 113 LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~-~~~La~----------------il~~ya~~~fr~~~dfl~~v~~ 175 (262)
T PF14225_consen 113 LPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG-LPNLAR----------------ILSSYAKGRFRDKDDFLSQVVS 175 (262)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC-CccHHH----------------HHHHHHhcCCCCHHHHHHHHHH
Confidence 556666666655 1344577888887764322 222222 222222222 112222223344
Q ss_pred Hhhhch-hhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHH
Q 037612 522 NLARTF-KATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSAL 600 (663)
Q Consensus 522 ~La~~~-~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al 600 (663)
.|...| +..+..++.-|+.+|.++.+.++.....-|.-+-..-+ ..+. ...+-|.||.+||.+.-. ..|+
T Consensus 176 ~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d-----~~~~-~~~dlispllrlL~t~~~---~eAL 246 (262)
T PF14225_consen 176 YLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVD-----MRSP-HGADLISPLLRLLQTDLW---MEAL 246 (262)
T ss_pred HHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhcccc-----CCCC-cchHHHHHHHHHhCCccH---HHHH
Confidence 555655 56677889999999999999999999888877753221 1122 455679999999977644 2356
Q ss_pred HHHHHH
Q 037612 601 VLLCYI 606 (663)
Q Consensus 601 ~~L~~l 606 (663)
..|-++
T Consensus 247 ~VLd~~ 252 (262)
T PF14225_consen 247 EVLDEI 252 (262)
T ss_pred HHHHHH
Confidence 555433
No 191
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=33.83 E-value=1.2e+03 Score=30.24 Aligned_cols=106 Identities=14% Similarity=0.143 Sum_probs=76.9
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC----CCcchHHH
Q 037612 151 QVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR----DPESVEHM 226 (663)
Q Consensus 151 li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~----~~~~~~~i 226 (663)
+...++..-+.+.|.+|..-|..|+.--+. +..+ .-++|-+|.|+......+|..|..+|..+-. -+.+-..|
T Consensus 427 lts~IR~lk~~~tK~~ALeLl~~lS~~i~d--e~~L-DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dani 503 (1431)
T KOG1240|consen 427 LTSCIRALKTIQTKLAALELLQELSTYIDD--EVKL-DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANI 503 (1431)
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHhhhcch--HHHH-hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchh
Confidence 334444434678999999999998864221 1111 3479999999998889999999999988773 23344556
Q ss_pred HHcCchHHHHHhhcc-CChhHHHHHHHHHHHHhc
Q 037612 227 IHSGVCLVFAKILKE-GPMKVQAVVAWAVSELAG 259 (663)
Q Consensus 227 v~aGaIp~Lv~lL~s-~~~~vq~~Aa~aL~nLA~ 259 (663)
+-+=..|-|-+++.+ ....++..=|..|+.||.
T Consensus 504 F~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~ 537 (1431)
T KOG1240|consen 504 FPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAK 537 (1431)
T ss_pred hHhhhhhhhHhhhccCccceehhhHHhhHHHHHH
Confidence 666689999999987 556677777888888885
No 192
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=32.44 E-value=1.7e+02 Score=36.84 Aligned_cols=124 Identities=19% Similarity=0.259 Sum_probs=83.9
Q ss_pred CccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhh-cCChhHHHHHHHHHHHHhhhhhccHHHHhhh
Q 037612 408 RELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLE-KGPEDVQYNSAMALMEITAVAEKDAELRRSA 486 (663)
Q Consensus 408 re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~-~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a 486 (663)
..+.||+ ++..|.-||++|-.=+..-|.. .++-|...++ +..+-++-|+.-++.-++ +.-.| .
T Consensus 932 ~~~sdp~----Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDla-v~fpn------l 995 (1251)
T KOG0414|consen 932 GLFSDPE----LQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLA-VRFPN------L 995 (1251)
T ss_pred CcCCCHH----HHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchh-hhccc------c
Confidence 3456775 6999999999998766666653 5788888888 677889999988887653 11111 1
Q ss_pred cCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHH
Q 037612 487 FKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREAS 554 (663)
Q Consensus 487 ~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa 554 (663)
|.| --+.|.+-+.+.++.++..|...|..|=-+---+-+|-++-+..+|.+.+++++.-|=
T Consensus 996 ie~-------~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk 1056 (1251)
T KOG0414|consen 996 IEP-------WTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAK 1056 (1251)
T ss_pred cch-------hhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHH
Confidence 111 2355777787777888888877777664332223356688888888877777765444
No 193
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.27 E-value=1.1e+02 Score=36.69 Aligned_cols=107 Identities=14% Similarity=0.243 Sum_probs=66.7
Q ss_pred hhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCc-chhhHHHHHHH
Q 037612 443 ESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADS-DLLIPCIKAVG 521 (663)
Q Consensus 443 esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~-~l~~~a~~aLg 521 (663)
+++-+.|+..||.+.++.|.++||++|-.++.. +..- |+..+.+++++.+.++ .++....-=|.
T Consensus 241 ~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~----p~al-----------k~Aa~~~i~l~~kesdnnvklIvldrl~ 305 (948)
T KOG1058|consen 241 KARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND----PTAL-----------KAAASTYIDLLVKESDNNVKLIVLDRLS 305 (948)
T ss_pred hhHHHHHHHHHHhcCCchhhhhhcceEEEccCC----HHHH-----------HHHHHHHHHHHHhccCcchhhhhHHHHH
Confidence 345688999999999999999999999766432 3322 4456777877776653 34433333333
Q ss_pred HhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCC
Q 037612 522 NLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSD 564 (663)
Q Consensus 522 ~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~ 564 (663)
.+...-...=.+.|--.+++|+..+.+|++-+.--...+.++-
T Consensus 306 ~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr 348 (948)
T KOG1058|consen 306 ELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR 348 (948)
T ss_pred HHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc
Confidence 3331111111234666678889999999887665555555443
No 194
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=31.53 E-value=1.6e+02 Score=27.56 Aligned_cols=108 Identities=17% Similarity=0.225 Sum_probs=72.0
Q ss_pred ccccHHHHHHHHHhhh-cchHH--HHhhccccCCCCccccCCCCcccchhhHhHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 037612 97 PAAAFRKMSSQLENSI-GDVSW--LLRVSASAEDRDDEYLGLPPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVS 173 (663)
Q Consensus 97 ~~~~l~~l~~~L~~~~-~~~~~--ll~~s~~~~~~~~~~~~~p~ia~~~~i~~~v~~li~~L~~~G~~e~k~~AA~~L~~ 173 (663)
+.+.+..++.+..+.. .+.+| +++++..-... +..+.+.+ +-+-.+|+. ++...+..|..-|-.
T Consensus 2 ~~~~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~--------~~~~kea~----~~l~krl~~-~~~~vq~~aL~lld~ 68 (140)
T PF00790_consen 2 PSSSITELIEKATSESLPSPDWSLILEICDLINSS--------PDGAKEAA----RALRKRLKH-GNPNVQLLALTLLDA 68 (140)
T ss_dssp CCSHHHHHHHHHT-TTSSS--HHHHHHHHHHHHTS--------TTHHHHHH----HHHHHHHTT-SSHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcC--------CccHHHHH----HHHHHHHhC-CCHHHHHHHHHHHHH
Confidence 4566777777775532 23344 44444332211 12234444 444779999 999999999998888
Q ss_pred hhcCC-hhhHHHHHhcCChHHHHHhhccCC-hH---HHHHHHHHHHHhc
Q 037612 174 LARDN-DRYGKLIIEEGGVGPLLKLVKEGK-PE---GQENAARAIGLLG 217 (663)
Q Consensus 174 La~~~-~~~~~~Ive~G~Ip~Lv~LL~sg~-~~---~q~~Aa~AL~nLs 217 (663)
+..+. +.....|.....+.-|++++.+.. .. +++.+...|...+
T Consensus 69 lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 69 LVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 88775 567788887888999999998653 33 7888888877776
No 195
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=31.26 E-value=3.2e+02 Score=27.58 Aligned_cols=85 Identities=19% Similarity=0.236 Sum_probs=53.0
Q ss_pred CchHHHHHHhhHHhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc--hhhhhhhhHHHHHHHHHH
Q 037612 1 MADKVKQILAKPIQLADQVVKAADEATSMKQDCAELKSKTEKLAALLRQAARASSDLYER--PTRRIIDDTEQVLEKALS 78 (663)
Q Consensus 1 ~~~~~~~~l~~~~~l~~~v~~~~~~~~~f~~~~~~i~~k~~~l~~~L~~~~~~~~~~~~~--p~~~l~~~~~~tl~~a~~ 78 (663)
|++.|+.+....-..+..- ...||.+|+.|+.=...|+..+.- |-++. +-.+-+..|++++++...
T Consensus 16 md~svk~l~~~~~~~~kk~------~~~~kkeyqk~G~af~~L~~af~~------d~~~~~t~Ls~Al~~~g~~~e~Ig~ 83 (199)
T cd07626 16 MDDSVKNLINIAQEQAKKH------QGPYKKEYQKIGQAFTSLGTAFEL------DETPTSVPLTQAIKHTGQAYEEIGE 83 (199)
T ss_pred HHHHHHHHHHHHHHHHHHH------hhhhhHHHHHHHHHHHHHHHHHcc------CCCccchHHHHHHHHHHHHHHHHHH
Confidence 4555555555544444332 467999999988888777766641 22222 237778888888888665
Q ss_pred HHHHhhhcCcccccceecccccHHHHHHHHHh
Q 037612 79 LVIKYRANGIIKRVFTIIPAAAFRKMSSQLEN 110 (663)
Q Consensus 79 l~~~C~~~~~~~r~~~i~~~~~l~~l~~~L~~ 110 (663)
+...- |..|+.++...|..
T Consensus 84 l~~eQ-------------a~~D~~~l~E~L~e 102 (199)
T cd07626 84 LFAEQ-------------PKHDLIPLLDGLHE 102 (199)
T ss_pred HHHHh-------------hHhhHHHHHHHHHH
Confidence 54433 45566677766654
No 196
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.92 E-value=2.3e+02 Score=34.20 Aligned_cols=37 Identities=24% Similarity=0.236 Sum_probs=29.8
Q ss_pred hhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCC
Q 037612 528 KATETRMIVPLVKLLDEREAEVSREASIALTKFACSD 564 (663)
Q Consensus 528 ~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~ 564 (663)
++...+-|..+..+|.+.++.|.-|||.+|.++..++
T Consensus 238 p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p 274 (948)
T KOG1058|consen 238 PAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDP 274 (948)
T ss_pred HHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCH
Confidence 3344678999999999889999999999988886443
No 197
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=29.39 E-value=32 Score=33.17 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=21.1
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHhcc
Q 037612 535 IVPLVKLLDEREAEVSREASIALTKFA 561 (663)
Q Consensus 535 I~pLV~LL~~~~~~v~~eAa~AL~~la 561 (663)
|.|||++|++.+.++..+|+.+|.+-.
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 999999999999999999999998753
No 198
>cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi
Probab=29.15 E-value=4.2e+02 Score=27.04 Aligned_cols=87 Identities=16% Similarity=0.207 Sum_probs=49.6
Q ss_pred CchHHHHHHhhHHhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhhHHHHHHHHHHHH
Q 037612 1 MADKVKQILAKPIQLADQVVKAADEATSMKQDCAELKSKTEKLAALLRQAARASSDLYERPTRRIIDDTEQVLEKALSLV 80 (663)
Q Consensus 1 ~~~~~~~~l~~~~~l~~~v~~~~~~~~~f~~~~~~i~~k~~~l~~~L~~~~~~~~~~~~~p~~~l~~~~~~tl~~a~~l~ 80 (663)
|++.|+.+....-+.+.+ -+..||.||+-|+.-...|+..+-- .+ .-++.+-.+-+..|+.||+....++
T Consensus 24 MD~svk~l~~~~~e~~kk------~~~~~KkEyqkiG~af~~LsqaFe~---d~-~~~~~~L~~Ai~~tg~~y~~IG~~f 93 (210)
T cd07668 24 MDDGVKELLTVGQEHWKR------CTGPLPKEYQKIGKALQSLATVFST---SG-YQGETDLNDAITEAGKTYEEIASLV 93 (210)
T ss_pred HHHHHHHHHHHHHHHHHH------HcccccHHHHHHHHHHHHHHHHHhc---CC-cccchHHHHHHHHHHHHHHHHHHHH
Confidence 445555555444443332 2467999999998877777665541 10 1122233555566777777654444
Q ss_pred HHhhhcCcccccceecccccHHHHHHHHHh
Q 037612 81 IKYRANGIIKRVFTIIPAAAFRKMSSQLEN 110 (663)
Q Consensus 81 ~~C~~~~~~~r~~~i~~~~~l~~l~~~L~~ 110 (663)
.- . |.-|+.++...|..
T Consensus 94 ae---Q----------pk~Dl~pl~d~L~~ 110 (210)
T cd07668 94 AE---Q----------PKKDLHFLMETNHE 110 (210)
T ss_pred Hh---c----------chhhhHHHHHHHHH
Confidence 43 3 44577777777654
No 199
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=28.94 E-value=1.4e+02 Score=28.45 Aligned_cols=47 Identities=23% Similarity=0.229 Sum_probs=32.7
Q ss_pred CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCC--hHHHHhccchhhhh
Q 037612 580 GAKHLVQLVYFGEQIVQLSALVLLCYIALHVPD--SEDLAQAEVLTVLE 626 (663)
Q Consensus 580 gi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~--~~~i~~~~vl~~L~ 626 (663)
+++.|..-|.++++.+|..|+.+|-.+..|.+. ..+++..+.+.-|.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~ 86 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELK 86 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHH
Confidence 455555556677787888888888888888876 45566666665554
No 200
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=28.90 E-value=3.3e+02 Score=24.38 Aligned_cols=68 Identities=15% Similarity=0.055 Sum_probs=51.6
Q ss_pred hcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHH
Q 037612 187 EEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAV 254 (663)
Q Consensus 187 e~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL 254 (663)
+.+.+..|++-....+...++.+..-|..|..++.-...+.+-|++.-|-++=..-++..+......+
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34445556665556666788899999999999999999999999999988866656677776665544
No 201
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=27.82 E-value=75 Score=34.50 Aligned_cols=74 Identities=11% Similarity=0.071 Sum_probs=59.6
Q ss_pred hhHhHHHHHHHHhccCCCHH-HHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhc
Q 037612 143 PILCLIWEQVAILYTAGSLE-HKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLG 217 (663)
Q Consensus 143 ~i~~~v~~li~~L~~~G~~e-~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs 217 (663)
+--.+++-|+..||. ..+. --.-|+.-++.+.+..++.+..+.+-|+=..+.+|+.+++++++.+|..|+..+-
T Consensus 353 dny~i~k~L~~~lq~-n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 353 DNYEIVKVLKKYLQS-NNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred hhHHHHHHHHHHHhc-CCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 334567778888887 4333 3345777888888888999999999999999999999999999999999997654
No 202
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=27.78 E-value=1.8e+02 Score=28.91 Aligned_cols=79 Identities=14% Similarity=0.216 Sum_probs=51.6
Q ss_pred hcCCCCchhHhHHHH----HHHHhhhc-CcchhhHHHHHHHHhhhchhh--HhhccHHH----HHHhcccCCHHHHHHHH
Q 037612 486 AFKPNAPACKAVVDQ----LFRIIEKA-DSDLLIPCIKAVGNLARTFKA--TETRMIVP----LVKLLDEREAEVSREAS 554 (663)
Q Consensus 486 a~~~~~~a~~~vv~q----L~~ll~~~-~~~l~~~a~~aLg~La~~~~~--~e~~~I~p----LV~LL~~~~~~v~~eAa 554 (663)
.|-+-+.-....+.+ |+..+..+ +..++..+.++++.|..+.+= -+.+.+++ +-.++.+.|.+++..+.
T Consensus 87 sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l 166 (182)
T PF13251_consen 87 SFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAAL 166 (182)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 455544333334433 55566655 467888999999999776442 23444444 44556889999999999
Q ss_pred HHHHhcccCC
Q 037612 555 IALTKFACSD 564 (663)
Q Consensus 555 ~AL~~la~~~ 564 (663)
.+++-+.+..
T Consensus 167 ~~~~~l~s~~ 176 (182)
T PF13251_consen 167 SCLGALLSVQ 176 (182)
T ss_pred HHHHHHHcCC
Confidence 8888876543
No 203
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=27.59 E-value=5.8e+02 Score=27.00 Aligned_cols=126 Identities=16% Similarity=0.212 Sum_probs=81.9
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHHHHHhc-CChHHHHH-------hhccCC--h---HHHHHHHHHHHHhcCCCcchHHH
Q 037612 160 SLEHKSDAAASLVSLARDNDRYGKLIIEE-GGVGPLLK-------LVKEGK--P---EGQENAARAIGLLGRDPESVEHM 226 (663)
Q Consensus 160 ~~e~k~~AA~~L~~La~~~~~~~~~Ive~-G~Ip~Lv~-------LL~sg~--~---~~q~~Aa~AL~nLs~~~~~~~~i 226 (663)
+.+.|++|...|..--...++-.-.+-.. |.+..|+. .|..++ + .--.+|..-|..++.+++.+...
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 46778887666655322222222233333 44444433 333332 1 33467888888899999999999
Q ss_pred HHcCchHHHHHhhccCC-----hhHHHHHHHHHHHHhc-CChhHHHHHHhCCcHHHHHHHhccCc
Q 037612 227 IHSGVCLVFAKILKEGP-----MKVQAVVAWAVSELAG-NYPKCQDLFAQHNIIRLLVGHLAFET 285 (663)
Q Consensus 227 v~aGaIp~Lv~lL~s~~-----~~vq~~Aa~aL~nLA~-~~~~~r~~i~~~g~I~~LV~LL~sgt 285 (663)
+++...--|.-.|+..+ +-++-.+-+.++.|.. ++++....+.+.+.||..+..++.|+
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~Gs 152 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGS 152 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhcc
Confidence 99998877777775432 4567777888888885 45678888889999999999999986
No 204
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=26.77 E-value=2e+02 Score=25.27 Aligned_cols=80 Identities=15% Similarity=0.128 Sum_probs=55.9
Q ss_pred HHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCc
Q 037612 194 LLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNI 273 (663)
Q Consensus 194 Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~ 273 (663)
.+..|.++.+.++-.+..-|..|-.... ...+-..+.+..+...|++.++=|=-.|..+|..|+...|+ .+
T Consensus 8 al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~--------~v 78 (92)
T PF10363_consen 8 ALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD--------EV 78 (92)
T ss_pred HHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH--------HH
Confidence 3455666778888888888888886555 22222356777888888888888888899999999875543 24
Q ss_pred HHHHHHHhc
Q 037612 274 IRLLVGHLA 282 (663)
Q Consensus 274 I~~LV~LL~ 282 (663)
++.|++-..
T Consensus 79 l~~L~~~y~ 87 (92)
T PF10363_consen 79 LPILLDEYA 87 (92)
T ss_pred HHHHHHHHh
Confidence 566665443
No 205
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=26.18 E-value=3.1e+02 Score=28.94 Aligned_cols=119 Identities=12% Similarity=0.125 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhhcCCh-hhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcch-------HHHH-HcCch
Q 037612 162 EHKSDAAASLVSLARDND-RYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESV-------EHMI-HSGVC 232 (663)
Q Consensus 162 e~k~~AA~~L~~La~~~~-~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~-------~~iv-~aGaI 232 (663)
..|..+...++.|.+.++ +....+.+.+.||..++.++.|+.-.|.-|...+..|-.++..- +++. =.-++
T Consensus 111 ~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL 190 (262)
T PF04078_consen 111 YLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVL 190 (262)
T ss_dssp HHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHH
T ss_pred hhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHH
Confidence 356777788888887544 34455567889999999999999999999999998887655421 1111 12244
Q ss_pred HHHHHh-hccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCcc
Q 037612 233 LVFAKI-LKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETV 286 (663)
Q Consensus 233 p~Lv~l-L~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~ 286 (663)
..+|.- .+.+++.+-+...++-..|+. ++.+|+.+.+ .+| ..|+.+++
T Consensus 191 ~~mV~~l~~~pS~RLLKhIIrCYlRLsd-nprar~aL~~--~LP---~~Lrd~~f 239 (262)
T PF04078_consen 191 NKMVEQLVKQPSPRLLKHIIRCYLRLSD-NPRAREALRQ--CLP---DQLRDGTF 239 (262)
T ss_dssp HHHHHHHHHS--HHHHHHHHHHHHHHTT-STTHHHHHHH--HS----GGGTSSTT
T ss_pred HHHHHHHccCCChhHHHHHHHHHHHHcc-CHHHHHHHHH--hCc---HHHhcHHH
Confidence 444443 356789999999999999996 5788888764 333 35666653
No 206
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=26.14 E-value=1.7e+02 Score=27.92 Aligned_cols=70 Identities=11% Similarity=0.119 Sum_probs=59.4
Q ss_pred ChHHHHHhhccCChHHHHHHHHHHHHhcCC--CcchHHHHHcCchHHHHHhhcc-CChhHHHHHHHHHHHHhc
Q 037612 190 GVGPLLKLVKEGKPEGQENAARAIGLLGRD--PESVEHMIHSGVCLVFAKILKE-GPMKVQAVVAWAVSELAG 259 (663)
Q Consensus 190 ~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~--~~~~~~iv~aGaIp~Lv~lL~s-~~~~vq~~Aa~aL~nLA~ 259 (663)
++..|.+-|.++++..|-.|...|-.+..+ +.....|.....+..|++++.. .++.|+......|...+.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 566777788888999999999999988864 4568889999999999999987 678999999888888875
No 207
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=25.83 E-value=2.2e+02 Score=26.41 Aligned_cols=70 Identities=20% Similarity=0.120 Sum_probs=57.4
Q ss_pred ChHHHHHhhccCChHHHHHHHHHHHHhcCC--CcchHHHHHcCchHHHHHhhcc---CChhHHHHHHHHHHHHhc
Q 037612 190 GVGPLLKLVKEGKPEGQENAARAIGLLGRD--PESVEHMIHSGVCLVFAKILKE---GPMKVQAVVAWAVSELAG 259 (663)
Q Consensus 190 ~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~--~~~~~~iv~aGaIp~Lv~lL~s---~~~~vq~~Aa~aL~nLA~ 259 (663)
++..|-+-|+++++..|..|...|-.+..+ +.....+.....+.-|++++.. .++.|+..+...+...+.
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 577888889999999999999999999865 3467777777888889999975 367899998888888775
No 208
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=25.48 E-value=3.1e+02 Score=25.44 Aligned_cols=69 Identities=16% Similarity=0.117 Sum_probs=56.5
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhcCChh-hHHHHHhcCChHHHHHhhccC---ChHHHHHHHHHHHHhcC
Q 037612 149 WEQVAILYTAGSLEHKSDAAASLVSLARDNDR-YGKLIIEEGGVGPLLKLVKEG---KPEGQENAARAIGLLGR 218 (663)
Q Consensus 149 ~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~-~~~~Ive~G~Ip~Lv~LL~sg---~~~~q~~Aa~AL~nLs~ 218 (663)
+-+-.+|+. |+...+..|...|-.+..+... ....|.....+..|++++... ++.++..+...|.+.+.
T Consensus 40 raL~krl~~-~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 40 RAIRKKIKY-GNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 344778999 9999999999999998887644 677787777788899999863 57899999999988884
No 209
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=25.39 E-value=8.3e+02 Score=28.31 Aligned_cols=147 Identities=15% Similarity=0.200 Sum_probs=81.9
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcC-----cc-h-hhHHHHHHH
Q 037612 449 CFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKAD-----SD-L-LIPCIKAVG 521 (663)
Q Consensus 449 ~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~-----~~-l-~~~a~~aLg 521 (663)
-+..|++..+++.|..+..-+-....+..-++..+|-.|.. -+...+=+++...+ ++ + +-.++.-|.
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeA------VGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLa 88 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEA------VGFHFLDRLLRTKSGPGDCPDDVYLQISITVLA 88 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHH------hccchHHHHhhcCCCCCCCcHHHHHHHHHHHHH
Confidence 35567777777777766665555554444444455444431 12234556666543 22 2 233333344
Q ss_pred Hhhhchhh--Hh--hccHHHHHHhcccC-CHH------HHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhc
Q 037612 522 NLARTFKA--TE--TRMIVPLVKLLDER-EAE------VSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYF 590 (663)
Q Consensus 522 ~La~~~~~--~e--~~~I~pLV~LL~~~-~~~------v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~ 590 (663)
+-++...- .+ -.-||.|...++.+ +++ +..++=..|...++.+ ...+.++..||++.++|.-..
T Consensus 89 cFC~~pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e-----~G~~~Lia~G~~~~~~Q~y~~ 163 (698)
T KOG2611|consen 89 CFCRVPELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAE-----AGLMTLIASGGLRVIAQMYEL 163 (698)
T ss_pred HHhCChhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCC-----chhHHHHhcCchHHHHHHHhC
Confidence 44443221 11 13599999999533 444 5556777777777653 467889999999999986443
Q ss_pred CCh-hHHHHHHHHHHHH
Q 037612 591 GEQ-IVQLSALVLLCYI 606 (663)
Q Consensus 591 ~~~-~~q~~Al~~L~~l 606 (663)
++- .-|.-|+..|--.
T Consensus 164 ~~~~~d~alal~Vlll~ 180 (698)
T KOG2611|consen 164 PDGSHDMALALKVLLLL 180 (698)
T ss_pred CCCchhHHHHHHHHHHH
Confidence 322 1344455444333
No 210
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=25.04 E-value=3.5e+02 Score=32.93 Aligned_cols=161 Identities=19% Similarity=0.231 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHH
Q 037612 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVV 498 (663)
Q Consensus 419 lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv 498 (663)
.+..++.=++++|..- ...+..++.++.+..|+......|++.|.-++-++...-....+.++ -..
T Consensus 253 Vr~~~a~~l~~~a~~~---~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~-----------~~~ 318 (759)
T KOG0211|consen 253 VRRAVASNLGNIAKVL---ESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVK-----------SLT 318 (759)
T ss_pred hHHHHHhhhHHHHHHH---HHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhh-----------hhh
Confidence 4777888888888743 33788899999999999999999999887777666433322213332 244
Q ss_pred HHHHHHhhhcCcchhhHHHHHHHHhhhchhhH--hhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHH
Q 037612 499 DQLFRIIEKADSDLLIPCIKAVGNLARTFKAT--ETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAII 576 (663)
Q Consensus 499 ~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~--e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv 576 (663)
+.++...+.++..+..........|...|... ..--++|...+++..+.+++.+++.=..+|++..++.+ ...|.
T Consensus 319 ~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~---~~~i~ 395 (759)
T KOG0211|consen 319 ESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASC---YPNIP 395 (759)
T ss_pred HHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCccc---ccccc
Confidence 55677777666666666666666666665551 12359999999999999999999988888887665311 11233
Q ss_pred HcCCHHHHHHHHhcCChhHH
Q 037612 577 SAGGAKHLVQLVYFGEQIVQ 596 (663)
Q Consensus 577 ~~ggi~~Lv~LL~~~~~~~q 596 (663)
...-++-+-.++....+.+.
T Consensus 396 ~~~ilp~~~~lv~d~~~~vr 415 (759)
T KOG0211|consen 396 DSSILPEVQVLVLDNALHVR 415 (759)
T ss_pred hhhhhHHHHHHHhcccchHH
Confidence 33335555556655555443
No 211
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.36 E-value=1.2e+03 Score=27.48 Aligned_cols=172 Identities=15% Similarity=0.160 Sum_probs=102.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhcCcccccceecccccHHHHHHHHHhhhcc---------hHHHHhhccccCCCCcccc
Q 037612 63 RRIIDDTEQVLEKALSLVIKYRANGIIKRVFTIIPAAAFRKMSSQLENSIGD---------VSWLLRVSASAEDRDDEYL 133 (663)
Q Consensus 63 ~~l~~~~~~tl~~a~~l~~~C~~~~~~~r~~~i~~~~~l~~l~~~L~~~~~~---------~~~ll~~s~~~~~~~~~~~ 133 (663)
-++..++.++.+.++++..+.-+.=..-+. ..-.++.++.+|.-++-+ ++|+--+-
T Consensus 131 ~klsaDsd~~V~~~aeLLdRLikdIVte~~----~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Ld----------- 195 (675)
T KOG0212|consen 131 CKLSADSDQNVRGGAELLDRLIKDIVTESA----STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLD----------- 195 (675)
T ss_pred HHHhcCCccccccHHHHHHHHHHHhccccc----cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh-----------
Confidence 677778888888888877766443111111 133578888888554432 67763211
Q ss_pred CCCCcccchhhHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHh-cCChHHHHHhhccCChHHHHHHHHH
Q 037612 134 GLPPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIE-EGGVGPLLKLVKEGKPEGQENAARA 212 (663)
Q Consensus 134 ~~p~ia~~~~i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive-~G~Ip~Lv~LL~sg~~~~q~~Aa~A 212 (663)
..|++.=..-+..+.--|+.+|.. .+.+.|..+=.+|.++-.+ -.+.-.-.+ ...|+.|+.=+.+..+..|..|..=
T Consensus 196 s~P~~~m~~yl~~~ldGLf~~LsD-~s~eVr~~~~t~l~~fL~e-I~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~W 273 (675)
T KOG0212|consen 196 SVPDLEMISYLPSLLDGLFNMLSD-SSDEVRTLTDTLLSEFLAE-IRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTW 273 (675)
T ss_pred cCCcHHHHhcchHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHH-HhcCccccCcccchhhccccccCCcHHHHHHHHHH
Confidence 223331112222234446778888 8888886665555554321 111111112 2468899999999999999999888
Q ss_pred HHHhcCCCcchHHHHHcCchHHHHHhhccCCh-hHHHHHH
Q 037612 213 IGLLGRDPESVEHMIHSGVCLVFAKILKEGPM-KVQAVVA 251 (663)
Q Consensus 213 L~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~-~vq~~Aa 251 (663)
|.....-+...-...-+|.+..+..++.+..+ ..++.+.
T Consensus 274 i~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~ 313 (675)
T KOG0212|consen 274 IQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQ 313 (675)
T ss_pred HHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHH
Confidence 88877655555555567777777777766443 3444443
No 212
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=24.05 E-value=1.9e+02 Score=27.97 Aligned_cols=28 Identities=36% Similarity=0.341 Sum_probs=21.5
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHHhcC
Q 037612 191 VGPLLKLVKEGKPEGQENAARAIGLLGR 218 (663)
Q Consensus 191 Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~ 218 (663)
|.|||++|++.+..+...|+.+|.+.-.
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 9999999999899999999999988764
No 213
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=23.92 E-value=1.9e+02 Score=26.99 Aligned_cols=71 Identities=17% Similarity=0.132 Sum_probs=0.0
Q ss_pred CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCC--hHHHHhccchhhhhhccccccccccCCcHH-HHHHHHHHHHhhhh
Q 037612 580 GAKHLVQLVYFGEQIVQLSALVLLCYIALHVPD--SEDLAQAEVLTVLEWTSKQSHMTQDETVDP-LLQDAKSRLELYQS 656 (663)
Q Consensus 580 gi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~--~~~i~~~~vl~~L~~~~~~~~~~q~~~~~~-l~~~a~~~le~~~~ 656 (663)
+++.|-.=|.++++.+|..|+.+|-.+..|.+. ..++...+.+..|. .+...+.... +-.+++.-+.....
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~------~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELV------KLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHH------HHHcCCCCcHHHHHHHHHHHHHHHH
No 214
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=23.91 E-value=1.5e+02 Score=27.12 Aligned_cols=39 Identities=23% Similarity=0.252 Sum_probs=29.7
Q ss_pred HHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHH
Q 037612 166 DAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEG 205 (663)
Q Consensus 166 ~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~ 205 (663)
.....|..||.. +..-...++.|+++.|+.||...+.++
T Consensus 65 ~~Ik~l~~La~~-P~LYp~lv~l~~v~sL~~LL~HeN~DI 103 (108)
T PF08216_consen 65 EEIKKLSVLATA-PELYPELVELGAVPSLLGLLSHENTDI 103 (108)
T ss_pred HHHHHHHHccCC-hhHHHHHHHcCCHHHHHHHHCCCCcce
Confidence 445567788876 455667779999999999998876544
No 215
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=23.03 E-value=4.6e+02 Score=28.65 Aligned_cols=113 Identities=12% Similarity=0.149 Sum_probs=84.7
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcC---ChHHHHHhhccCChHHHHHHHHHHHHhcCCCcch
Q 037612 147 LIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEG---GVGPLLKLVKEGKPEGQENAARAIGLLGRDPESV 223 (663)
Q Consensus 147 ~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G---~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~ 223 (663)
.+|.++.-.+. ++.+.-.+|..++-.|-..+..-........ .+...-.||.+++-..+..+..-|+.|-.++.|.
T Consensus 165 ~f~~ff~~~~~-~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~ 243 (335)
T PF08569_consen 165 CFWKFFKYVQL-PNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNF 243 (335)
T ss_dssp GGGGHHHHTTS-SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGH
T ss_pred HHHHHHHHhcC-CccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHH
Confidence 46889999999 9999999999999997654443333333322 4668889999999999999999999999999987
Q ss_pred HHHH----HcCchHHHHHhhccCChhHHHHHHHHHHHHhcC
Q 037612 224 EHMI----HSGVCLVFAKILKEGPMKVQAVVAWAVSELAGN 260 (663)
Q Consensus 224 ~~iv----~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~ 260 (663)
..|. +.-=+..++.+|++.+..+|-.|--..--..++
T Consensus 244 ~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 244 NVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 7654 344577888899999999999987766655553
No 216
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=22.27 E-value=6.6e+02 Score=25.65 Aligned_cols=87 Identities=14% Similarity=0.179 Sum_probs=49.9
Q ss_pred CchHHHHHHhhHHhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhhHHHHHHHHHHHH
Q 037612 1 MADKVKQILAKPIQLADQVVKAADEATSMKQDCAELKSKTEKLAALLRQAARASSDLYERPTRRIIDDTEQVLEKALSLV 80 (663)
Q Consensus 1 ~~~~~~~~l~~~~~l~~~v~~~~~~~~~f~~~~~~i~~k~~~l~~~L~~~~~~~~~~~~~p~~~l~~~~~~tl~~a~~l~ 80 (663)
|++.|+.++...-+.+.+ -+..||.||+-|+.-...|+..+-- .. ..++.+-..-+..|+.||+....++
T Consensus 24 MD~svk~l~~~~~e~~kk------~~~~~kkEyqkiG~af~~LsqaFe~---d~-~~~s~~L~~Av~~tG~~y~~IG~~f 93 (207)
T cd07669 24 MDDSVLQLSNVASELVRK------HLGGFRKEFQKLGNAFQAISHSFQL---DP-PYSSEALNNAISHTGRTYEAVGEMF 93 (207)
T ss_pred HHHHHHHHHHHHHHHHHH------HcccccHHHHHHHHHHHHHHHHHhc---CC-CccchHHHHHHHHHHHHHHHHHHHH
Confidence 455555555544443332 2456999999998878777766641 00 1122233555666777777755544
Q ss_pred HHhhhcCcccccceecccccHHHHHHHHHh
Q 037612 81 IKYRANGIIKRVFTIIPAAAFRKMSSQLEN 110 (663)
Q Consensus 81 ~~C~~~~~~~r~~~i~~~~~l~~l~~~L~~ 110 (663)
.-- |--|+.++...|..
T Consensus 94 aeQ-------------pk~D~~pl~d~L~~ 110 (207)
T cd07669 94 AEQ-------------PKNDLFQMLDTLSL 110 (207)
T ss_pred Hhc-------------chhhhhHHHHHHHH
Confidence 432 44567777766654
No 217
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=22.08 E-value=2.8e+02 Score=27.57 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=62.3
Q ss_pred ChhHHHHHHHHHHHHHHHHhcCChhhhHHHhh----hccHH---------------HHHHHhhcC-ChhHHHHHHHHHHH
Q 037612 412 DPATKAYMKAMAARALWHLAKGNSPICRSITE----SRALL---------------CFAVLLEKG-PEDVQYNSAMALME 471 (663)
Q Consensus 412 d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~e----sgal~---------------~L~~LL~~~-~~~vq~~aa~AL~~ 471 (663)
||.. +.+..|+.+|..|-.|....=....+ .+..- +|...|..+ +..+......++.-
T Consensus 51 Dp~~--kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~ 128 (182)
T PF13251_consen 51 DPSP--KVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAV 128 (182)
T ss_pred CCch--hHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 5543 67899999999998875333222221 12222 444445444 23444444444433
Q ss_pred HhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchh
Q 037612 472 ITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFK 528 (663)
Q Consensus 472 i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~ 528 (663)
+.... |--| + ..+....++.++..++.+.|.+++..+...+|+|.....
T Consensus 129 Lv~~t---PY~r---L--~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 129 LVQAT---PYHR---L--PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred HHccC---Chhh---c--CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 32211 1111 1 113344578888899999999999999999999876544
No 218
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=22.00 E-value=4.1e+02 Score=32.03 Aligned_cols=128 Identities=15% Similarity=0.105 Sum_probs=0.0
Q ss_pred chhhHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCC
Q 037612 141 NEPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDP 220 (663)
Q Consensus 141 ~~~i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~ 220 (663)
+|-+..++..++.-..+ .+..+|.+.+.-|.-|...+.. +...+-.+.+..|..-|....+.++..|+.||..+=.++
T Consensus 80 ~DlV~~~f~hlLRg~Es-kdk~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~ 157 (892)
T KOG2025|consen 80 EDLVAGTFYHLLRGTES-KDKKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDP 157 (892)
T ss_pred hhHHHHHHHHHHhcccC-cchhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCC
Q ss_pred cchHHHHHcCchHHHHHhhcc-CChhHHHHHHHHHHHHhcCChhHHHHHHh-----CCcHHHHH
Q 037612 221 ESVEHMIHSGVCLVFAKILKE-GPMKVQAVVAWAVSELAGNYPKCQDLFAQ-----HNIIRLLV 278 (663)
Q Consensus 221 ~~~~~iv~aGaIp~Lv~lL~s-~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~-----~g~I~~LV 278 (663)
.+-.-= ++..|+.+++. ++++|+..| |.||+ .++..+-.|.+ .|+++.||
T Consensus 158 ~dee~~----v~n~l~~liqnDpS~EVRRaa---LsnI~-vdnsTlp~IveRarDV~~anRrlv 213 (892)
T KOG2025|consen 158 KDEECP----VVNLLKDLIQNDPSDEVRRAA---LSNIS-VDNSTLPCIVERARDVSGANRRLV 213 (892)
T ss_pred CCCccc----HHHHHHHHHhcCCcHHHHHHH---HHhhc-cCcccchhHHHHhhhhhHHHHHHH
No 219
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=21.90 E-value=2.3e+02 Score=26.84 Aligned_cols=71 Identities=11% Similarity=0.008 Sum_probs=58.9
Q ss_pred CChHHHHHhhccCChHHHHHHHHHHHHhcCC--CcchHHHHHcCchHHHHHhhcc-CChhHHHHHHHHHHHHhc
Q 037612 189 GGVGPLLKLVKEGKPEGQENAARAIGLLGRD--PESVEHMIHSGVCLVFAKILKE-GPMKVQAVVAWAVSELAG 259 (663)
Q Consensus 189 G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~--~~~~~~iv~aGaIp~Lv~lL~s-~~~~vq~~Aa~aL~nLA~ 259 (663)
.++..|.+-|.++++..|-.|...|-.+..+ ......+.+.+.+..|++++.. .++.|+..+...+..-+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 4577888888999999999999988888865 4567888899999999999974 567899888888877774
No 220
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.89 E-value=3.4e+02 Score=34.32 Aligned_cols=135 Identities=14% Similarity=0.095 Sum_probs=84.2
Q ss_pred hHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcC------ChHHHHHhhccC--ChHHHHHH--HHHH
Q 037612 144 ILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEG------GVGPLLKLVKEG--KPEGQENA--ARAI 213 (663)
Q Consensus 144 i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G------~Ip~Lv~LL~sg--~~~~q~~A--a~AL 213 (663)
+...|.+.|=.++. -+...|++|..+|..+.. .....+.| .|.+.+..+..| .......| ..|+
T Consensus 736 i~k~I~EvIL~~Ke-~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai 809 (1176)
T KOG1248|consen 736 IPKLIPEVILSLKE-VNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAI 809 (1176)
T ss_pred HHHHHHHHHHhccc-ccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHH
Confidence 34455555555566 688899999999999873 12222333 678888888877 33333322 3455
Q ss_pred HHhcCC-CcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccC
Q 037612 214 GLLGRD-PESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFE 284 (663)
Q Consensus 214 ~nLs~~-~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sg 284 (663)
..+... ...-....-.+.|.-+.-.|.++++++...|...+.-+....|+.--....+-.+|.+..++...
T Consensus 810 ~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~ 881 (1176)
T KOG1248|consen 810 THILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH 881 (1176)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh
Confidence 555432 22222222234555566666788899999999999988877776655544555777777777543
No 221
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=21.62 E-value=2.6e+02 Score=26.56 Aligned_cols=70 Identities=9% Similarity=-0.023 Sum_probs=57.5
Q ss_pred ChHHHHHhhccCChHHHHHHHHHHHHhcCC--CcchHHHHHcCchHHHHHhhcc------CChhHHHHHHHHHHHHhc
Q 037612 190 GVGPLLKLVKEGKPEGQENAARAIGLLGRD--PESVEHMIHSGVCLVFAKILKE------GPMKVQAVVAWAVSELAG 259 (663)
Q Consensus 190 ~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~--~~~~~~iv~aGaIp~Lv~lL~s------~~~~vq~~Aa~aL~nLA~ 259 (663)
++..|.+-|.++++..|-.|...|-.+..+ +..+..|.+...+.-|++++.. .++.|+......+..-+.
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 566788888899999999999999888854 5678889999999999999953 457899988887777764
No 222
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=21.56 E-value=1.6e+02 Score=30.45 Aligned_cols=109 Identities=13% Similarity=0.052 Sum_probs=71.5
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHHHHhc-C-ChHHHHHhhccC----ChHHHHHHHHHHHHhcCC--CcchHHHHHcC
Q 037612 159 GSLEHKSDAAASLVSLARDNDRYGKLIIEE-G-GVGPLLKLVKEG----KPEGQENAARAIGLLGRD--PESVEHMIHSG 230 (663)
Q Consensus 159 G~~e~k~~AA~~L~~La~~~~~~~~~Ive~-G-~Ip~Lv~LL~sg----~~~~q~~Aa~AL~nLs~~--~~~~~~iv~aG 230 (663)
+...-+.-+.+.+.|+-.. +..+..+.+. + .|...+..+.+. +...|..+++.++|+|.. ..+...-....
T Consensus 122 ~~~~~~ml~lR~l~NlF~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ 200 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSH-PPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSE 200 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTS-CCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHH
T ss_pred CcHHHHHHHHHHHHHhhCC-CccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 4566777888999998875 5567776643 3 466666655554 578999999999999931 11111111112
Q ss_pred chHHHHHhh-cc-CChhHHHHHHHHHHHHhcCChhHHHHH
Q 037612 231 VCLVFAKIL-KE-GPMKVQAVVAWAVSELAGNYPKCQDLF 268 (663)
Q Consensus 231 aIp~Lv~lL-~s-~~~~vq~~Aa~aL~nLA~~~~~~r~~i 268 (663)
.+..+++++ .. .++|+.-...-||++|...++..+...
T Consensus 201 ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~ 240 (268)
T PF08324_consen 201 LLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLA 240 (268)
T ss_dssp HHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHC
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHH
Confidence 355666633 22 578999999999999997665555544
No 223
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=21.29 E-value=3.7e+02 Score=29.07 Aligned_cols=66 Identities=12% Similarity=0.296 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCCCcchHHHHHcC--chHHHHHhhccC---ChhHHHHHHHHHHHHhcCChhHHHHHH
Q 037612 204 EGQENAARAIGLLGRDPESVEHMIHSG--VCLVFAKILKEG---PMKVQAVVAWAVSELAGNYPKCQDLFA 269 (663)
Q Consensus 204 ~~q~~Aa~AL~nLs~~~~~~~~iv~aG--aIp~Lv~lL~s~---~~~vq~~Aa~aL~nLA~~~~~~r~~i~ 269 (663)
.++-.|...|..+..++.....++..+ .+.-|+++++.+ +.++|..|..+|.-|+.......+.+.
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~ 307 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLR 307 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 445566666666667778888898888 999999999764 468999999999999986655555544
No 224
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=20.90 E-value=7.9e+02 Score=30.32 Aligned_cols=126 Identities=15% Similarity=0.213 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhH
Q 037612 418 YMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAV 497 (663)
Q Consensus 418 ~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~v 497 (663)
.+...||..|..+|++....+.. ...+.+++|..-+....+.++.....++=.+... .+ .-..
T Consensus 310 ~v~~~aa~~l~~ia~~lr~~~~~-~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns---~~-------------l~~~ 372 (815)
T KOG1820|consen 310 NVVMLAAQILELIAKKLRPLFRK-YAKNVFPSLLDRLKEKKSELRDALLKALDAILNS---TP-------------LSKM 372 (815)
T ss_pred hHHHHHHHHHHHHHHhcchhhHH-HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc---cc-------------HHHH
Confidence 46677888888899988777554 3355667777666666666655444443323211 10 1124
Q ss_pred HHHHHHHhhhcCcchhhHHHHHHHHhhhchh-h-----HhhccHHHHHHhcccCCHHHHHHHHHHHHhc
Q 037612 498 VDQLFRIIEKADSDLLIPCIKAVGNLARTFK-A-----TETRMIVPLVKLLDEREAEVSREASIALTKF 560 (663)
Q Consensus 498 v~qL~~ll~~~~~~l~~~a~~aLg~La~~~~-~-----~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~l 560 (663)
.+.+...+++..+..+..|...+...-+... . .-...+|.++..-.+.+.+|++.|..+++.+
T Consensus 373 ~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v 441 (815)
T KOG1820|consen 373 SEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAV 441 (815)
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHH
Confidence 5667788899999999998887766654433 1 1135789999999999999999988888766
No 225
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=20.46 E-value=5.9e+02 Score=26.94 Aligned_cols=96 Identities=14% Similarity=0.204 Sum_probs=69.6
Q ss_pred HHHHHHHHHhhcCChhhHHHHHhcCC---hHHHHHhhccC-C-hHHHHHHHHHHHHhcCC--CcchHHHHHcCchHHHHH
Q 037612 165 SDAAASLVSLARDNDRYGKLIIEEGG---VGPLLKLVKEG-K-PEGQENAARAIGLLGRD--PESVEHMIHSGVCLVFAK 237 (663)
Q Consensus 165 ~~AA~~L~~La~~~~~~~~~Ive~G~---Ip~Lv~LL~sg-~-~~~q~~Aa~AL~nLs~~--~~~~~~iv~aGaIp~Lv~ 237 (663)
-+|..-|-.+|++ ++.|....++-. +-|++.--+.. . .-.+--+...++.|..+ ++....+...++||..++
T Consensus 97 cnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 97 CNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 4666666667877 567888887654 22443333322 2 34677888889998853 455777889999999999
Q ss_pred hhccCChhHHHHHHHHHHHHhcCC
Q 037612 238 ILKEGPMKVQAVVAWAVSELAGNY 261 (663)
Q Consensus 238 lL~s~~~~vq~~Aa~aL~nLA~~~ 261 (663)
....|++..|..|...+..+-.++
T Consensus 176 ime~GSelSKtvA~fIlqKIlldD 199 (293)
T KOG3036|consen 176 IMESGSELSKTVATFILQKILLDD 199 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHhhcc
Confidence 999999999999998888877644
Done!