Query 037612
Match_columns 663
No_of_seqs 318 out of 1056
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 03:45:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037612.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037612hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ul1_B Importin subunit alpha- 100.0 6.3E-40 2.2E-44 368.3 34.0 406 147-656 58-478 (510)
2 3tpo_A Importin subunit alpha- 100.0 9.9E-39 3.4E-43 359.8 33.9 405 148-656 78-497 (529)
3 3now_A UNC-45 protein, SD10334 100.0 1.9E-36 6.4E-41 354.4 36.0 404 97-654 329-783 (810)
4 1xm9_A Plakophilin 1; armadill 100.0 1.4E-36 4.8E-41 336.9 30.9 377 149-656 5-449 (457)
5 3l6x_A Catenin delta-1; cateni 100.0 2.7E-35 9.2E-40 334.4 32.5 381 149-621 51-489 (584)
6 1xm9_A Plakophilin 1; armadill 100.0 8.1E-35 2.8E-39 322.8 25.1 412 100-612 3-453 (457)
7 3nmz_A APC variant protein; pr 100.0 3.6E-34 1.2E-38 317.7 26.6 311 159-612 94-454 (458)
8 4b8j_A Importin subunit alpha- 100.0 8.2E-33 2.8E-37 309.5 36.9 401 148-657 76-497 (528)
9 3nmw_A APC variant protein; AR 100.0 5.2E-34 1.8E-38 307.0 26.0 274 161-612 46-338 (354)
10 3nmz_A APC variant protein; pr 100.0 1.2E-32 4.3E-37 305.4 28.2 363 151-654 37-451 (458)
11 3now_A UNC-45 protein, SD10334 100.0 8.5E-33 2.9E-37 323.6 27.0 312 149-606 424-780 (810)
12 1wa5_B Importin alpha subunit; 100.0 5.1E-31 1.7E-35 295.6 37.3 404 146-656 87-510 (530)
13 1jdh_A Beta-catenin; beta-cate 100.0 6.3E-32 2.2E-36 299.9 27.0 481 97-652 15-526 (529)
14 3tpo_A Importin subunit alpha- 100.0 3.8E-31 1.3E-35 297.9 30.8 360 94-604 114-493 (529)
15 3l6x_A Catenin delta-1; cateni 100.0 3.1E-31 1.1E-35 301.1 29.9 303 186-630 45-405 (584)
16 3ul1_B Importin subunit alpha- 100.0 4.3E-31 1.5E-35 296.5 28.4 381 71-605 72-475 (510)
17 2jdq_A Importin alpha-1 subuni 100.0 3.4E-30 1.2E-34 279.8 33.8 401 148-656 22-443 (450)
18 1jdh_A Beta-catenin; beta-cate 100.0 5.5E-30 1.9E-34 284.3 33.8 331 149-626 20-361 (529)
19 2z6h_A Catenin beta-1, beta-ca 100.0 2.5E-29 8.4E-34 289.3 34.7 463 97-627 12-505 (644)
20 2z6g_A B-catenin; FULL-length, 100.0 1.7E-28 5.8E-33 289.2 35.9 479 97-652 148-662 (780)
21 2z6h_A Catenin beta-1, beta-ca 100.0 1.3E-28 4.3E-33 283.4 34.1 330 151-627 19-359 (644)
22 4b8j_A Importin subunit alpha- 100.0 3.3E-28 1.1E-32 272.2 32.8 362 95-607 113-495 (528)
23 1wa5_B Importin alpha subunit; 100.0 8.9E-28 3E-32 269.3 31.9 363 96-609 127-511 (530)
24 3nmw_A APC variant protein; AR 100.0 3.4E-29 1.2E-33 269.5 19.3 232 160-564 97-336 (354)
25 2jdq_A Importin alpha-1 subuni 100.0 1.6E-27 5.6E-32 258.7 31.8 317 149-607 110-442 (450)
26 2z6g_A B-catenin; FULL-length, 100.0 1.3E-27 4.6E-32 281.5 33.4 333 148-627 152-495 (780)
27 4hxt_A De novo protein OR329; 99.9 9.5E-26 3.3E-30 225.3 27.4 243 189-612 2-245 (252)
28 4hxt_A De novo protein OR329; 99.9 1.7E-25 5.8E-30 223.4 27.0 238 149-564 5-243 (252)
29 4db8_A Armadillo-repeat protei 99.9 1E-25 3.5E-30 226.8 23.0 236 149-562 15-251 (252)
30 4db8_A Armadillo-repeat protei 99.9 6E-25 2.1E-29 221.2 23.4 241 188-609 11-252 (252)
31 3opb_A SWI5-dependent HO expre 99.9 7.1E-23 2.4E-27 236.5 30.4 326 144-609 332-729 (778)
32 3tt9_A Plakophilin-2; cell adh 99.9 7.8E-24 2.7E-28 214.9 16.8 206 147-473 9-228 (233)
33 4db6_A Armadillo repeat protei 99.9 7.6E-23 2.6E-27 200.4 22.9 191 151-473 17-208 (210)
34 4db6_A Armadillo repeat protei 99.9 4E-22 1.4E-26 195.2 22.9 199 187-562 10-209 (210)
35 3tt9_A Plakophilin-2; cell adh 99.9 7.4E-23 2.5E-27 207.7 17.9 196 190-525 9-229 (233)
36 1xqr_A HSPBP1 protein; armadil 99.9 3.3E-22 1.1E-26 210.1 22.7 233 201-658 52-289 (296)
37 1xqr_A HSPBP1 protein; armadil 99.9 1.5E-21 5E-26 205.1 20.1 185 159-475 52-239 (296)
38 3opb_A SWI5-dependent HO expre 99.9 8.6E-21 2.9E-25 219.2 26.7 294 147-562 377-728 (778)
39 1oyz_A Hypothetical protein YI 99.5 1.8E-12 6.2E-17 132.6 24.5 250 149-603 26-277 (280)
40 1oyz_A Hypothetical protein YI 99.5 8.1E-13 2.8E-17 135.2 21.7 259 185-651 19-277 (280)
41 3grl_A General vesicular trans 99.4 8.4E-12 2.9E-16 141.4 23.5 291 148-620 23-355 (651)
42 3grl_A General vesicular trans 99.4 7.4E-11 2.5E-15 133.7 28.2 328 152-617 66-458 (651)
43 3ltm_A Alpha-REP4; protein eng 99.3 1.3E-10 4.4E-15 113.7 19.6 187 188-563 18-204 (211)
44 3ltj_A Alpharep-4; protein eng 99.3 2.2E-10 7.6E-15 111.1 18.9 185 188-561 13-197 (201)
45 1b3u_A Protein (protein phosph 99.3 7.5E-10 2.6E-14 123.4 25.6 335 152-652 248-586 (588)
46 2vgl_B AP-2 complex subunit be 99.3 7.5E-10 2.6E-14 126.1 25.8 320 144-614 119-463 (591)
47 4fdd_A Transportin-1; heat rep 99.2 1.4E-10 4.8E-15 137.0 20.3 314 147-612 129-475 (852)
48 3ltm_A Alpha-REP4; protein eng 99.2 3.8E-10 1.3E-14 110.4 18.7 141 419-611 66-206 (211)
49 1b3u_A Protein (protein phosph 99.2 1.4E-09 4.8E-14 121.2 22.6 206 419-652 340-547 (588)
50 3ltj_A Alpharep-4; protein eng 99.2 1.3E-09 4.5E-14 105.6 18.6 136 419-606 61-196 (201)
51 1w63_A Adapter-related protein 99.1 3.9E-08 1.3E-12 112.7 30.3 305 144-610 105-416 (618)
52 2vgl_B AP-2 complex subunit be 99.1 1E-09 3.4E-14 125.1 15.9 303 147-613 87-424 (591)
53 4fdd_A Transportin-1; heat rep 99.0 1.1E-08 3.8E-13 120.8 22.3 315 144-609 87-430 (852)
54 4gmo_A Putative uncharacterize 99.0 9.4E-09 3.2E-13 119.3 19.4 221 187-524 32-257 (684)
55 4gmo_A Putative uncharacterize 99.0 2.4E-09 8.3E-14 124.3 14.3 129 152-282 40-192 (684)
56 1w63_A Adapter-related protein 98.8 1.8E-07 6.1E-12 107.3 23.2 332 144-608 140-490 (618)
57 1ibr_B P95, importin beta-1 su 98.8 6.5E-08 2.2E-12 104.3 17.7 316 151-610 95-439 (462)
58 2bpt_A Importin beta-1 subunit 98.8 4.4E-07 1.5E-11 105.9 24.9 316 147-612 370-715 (861)
59 1ibr_B P95, importin beta-1 su 98.8 3E-07 1E-11 99.0 20.5 289 147-562 129-437 (462)
60 1qgr_A Protein (importin beta 98.6 5E-06 1.7E-10 97.2 26.7 330 147-609 129-480 (876)
61 2bpt_A Importin beta-1 subunit 98.6 1.1E-05 3.8E-10 94.1 28.2 334 161-653 345-711 (861)
62 1qgr_A Protein (importin beta 98.5 7.6E-06 2.6E-10 95.6 24.0 316 148-611 368-725 (876)
63 1te4_A Conserved protein MTH18 98.2 8.6E-08 2.9E-12 87.3 -1.1 119 444-604 11-129 (131)
64 2vgl_A Adaptor protein complex 98.2 0.00013 4.3E-09 83.7 23.6 304 144-608 109-433 (621)
65 1u6g_C TIP120 protein, CAND1; 97.9 9.2E-05 3.2E-09 90.8 16.8 265 148-561 8-283 (1230)
66 4ady_A RPN2, 26S proteasome re 97.9 0.0022 7.4E-08 76.2 27.3 296 160-612 371-680 (963)
67 1u6g_C TIP120 protein, CAND1; 97.9 0.00038 1.3E-08 85.3 21.4 307 146-608 48-403 (1230)
68 1te4_A Conserved protein MTH18 97.8 3.8E-05 1.3E-09 69.5 8.0 88 447-560 44-131 (131)
69 2vgl_A Adaptor protein complex 97.8 0.0058 2E-07 69.9 26.6 284 160-612 51-362 (621)
70 2qk2_A LP04448P; mini spindles 97.7 0.00065 2.2E-08 67.6 15.2 179 418-612 30-209 (242)
71 4ady_A RPN2, 26S proteasome re 97.5 0.012 4.3E-07 69.8 25.0 259 161-560 451-717 (963)
72 3b2a_A TON_1937, putative unch 97.3 0.005 1.7E-07 61.7 14.9 150 445-614 33-185 (265)
73 1ho8_A Vacuolar ATP synthase s 97.2 0.052 1.8E-06 59.8 23.2 132 150-284 171-330 (480)
74 3b2a_A TON_1937, putative unch 97.1 0.0053 1.8E-07 61.6 13.7 173 419-613 49-222 (265)
75 2db0_A 253AA long hypothetical 97.1 0.18 6.3E-06 48.8 23.5 157 422-607 89-245 (253)
76 2qk2_A LP04448P; mini spindles 97.0 0.0057 1.9E-07 60.7 12.7 127 418-561 72-204 (242)
77 2qk1_A Protein STU2; STU2P, XM 97.0 0.012 4.2E-07 59.3 15.3 186 418-612 31-224 (249)
78 3tjz_B Coatomer subunit gamma; 96.8 0.062 2.1E-06 57.3 19.6 270 165-611 45-319 (355)
79 2qk1_A Protein STU2; STU2P, XM 96.6 0.049 1.7E-06 54.9 16.1 184 450-651 21-218 (249)
80 3tjz_B Coatomer subunit gamma; 96.4 0.076 2.6E-06 56.6 16.8 165 418-610 43-207 (355)
81 3dad_A FH1/FH2 domain-containi 96.3 0.022 7.5E-07 60.0 11.9 135 147-282 119-264 (339)
82 2iw3_A Elongation factor 3A; a 96.3 0.087 3E-06 63.1 18.2 126 148-283 16-144 (986)
83 3dad_A FH1/FH2 domain-containi 96.1 0.16 5.5E-06 53.5 16.9 92 191-283 120-213 (339)
84 2db0_A 253AA long hypothetical 95.3 0.32 1.1E-05 47.2 13.8 115 144-268 105-219 (253)
85 1ho8_A Vacuolar ATP synthase s 95.0 5.4 0.00019 43.9 29.2 331 148-607 79-475 (480)
86 1wa5_C Importin alpha RE-expor 92.2 2.5 8.5E-05 50.3 17.2 103 447-559 550-667 (960)
87 2x1g_F Cadmus; transport prote 89.6 23 0.0008 41.7 22.1 55 201-259 476-535 (971)
88 4ffb_C Protein STU2; tubulin f 89.3 2.8 9.7E-05 42.0 12.1 128 418-560 70-210 (278)
89 1lrv_A LRV, leucine-rich repea 88.3 0.17 5.8E-06 51.0 2.0 64 154-253 58-121 (244)
90 2x19_B Importin-13; nuclear tr 88.0 47 0.0016 38.9 25.8 92 159-259 461-556 (963)
91 1wa5_C Importin alpha RE-expor 82.4 12 0.0004 44.5 14.4 179 418-607 473-669 (960)
92 2iw3_A Elongation factor 3A; a 79.7 50 0.0017 39.6 18.2 125 151-284 100-225 (986)
93 4hat_C Exportin-1; heat repeat 79.3 2 6.9E-05 51.9 6.3 106 160-269 466-576 (1023)
94 3l9t_A Putative uncharacterize 78.5 19 0.00064 36.0 11.9 129 418-577 86-218 (240)
95 4hat_C Exportin-1; heat repeat 78.1 8.7 0.0003 46.3 11.3 134 419-563 469-619 (1023)
96 2of3_A ZYG-9; multifunctional 77.0 12 0.0004 38.0 10.3 98 447-560 134-234 (266)
97 3u0r_A Apoptosis inhibitor 5; 72.1 14 0.0005 40.5 9.9 95 156-262 38-132 (507)
98 3u0r_A Apoptosis inhibitor 5; 70.9 14 0.00047 40.7 9.4 123 456-606 39-161 (507)
99 1lsh_A Lipovitellin (LV-1N, LV 69.1 40 0.0014 40.7 14.0 100 495-609 390-508 (1056)
100 4ffb_C Protein STU2; tubulin f 66.6 62 0.0021 31.9 12.9 187 418-612 24-216 (278)
101 1lrv_A LRV, leucine-rich repea 64.7 4.4 0.00015 40.6 3.8 21 449-469 102-122 (244)
102 3m1i_C Exportin-1; heat repeat 64.5 94 0.0032 37.0 16.1 91 515-612 519-622 (1049)
103 1lsh_A Lipovitellin (LV-1N, LV 63.9 46 0.0016 40.1 13.2 91 495-603 439-538 (1056)
104 2f31_A Diaphanous protein homo 57.0 25 0.00087 34.5 7.8 108 151-261 5-127 (233)
105 2x1g_F Cadmus; transport prote 56.9 60 0.0021 38.1 12.4 125 419-562 480-615 (971)
106 2x19_B Importin-13; nuclear tr 55.1 85 0.0029 36.6 13.2 127 418-562 464-599 (963)
107 3ebb_A Phospholipase A2-activa 52.7 1.9E+02 0.0064 29.6 13.8 107 159-268 160-272 (304)
108 3l9t_A Putative uncharacterize 52.6 1.2E+02 0.0039 30.3 11.5 99 159-270 116-218 (240)
109 2of3_A ZYG-9; multifunctional 52.1 2E+02 0.0067 28.9 14.5 139 456-613 98-241 (266)
110 3m1i_C Exportin-1; heat repeat 51.5 75 0.0025 37.9 12.1 132 419-561 469-617 (1049)
111 3eg5_B Protein diaphanous homo 48.5 74 0.0025 33.7 10.2 109 151-261 71-193 (383)
112 3oc3_A Helicase MOT1, MOT1; re 47.5 22 0.00075 40.2 5.8 85 162-258 243-327 (800)
113 3ebb_A Phospholipase A2-activa 43.4 1.9E+02 0.0064 29.6 12.0 64 196-259 154-220 (304)
114 2fv2_A RCD1 required for cell 41.7 95 0.0033 31.3 9.0 107 163-270 118-234 (268)
115 2bnx_A Diaphanous protein homo 35.4 1E+02 0.0034 32.7 8.7 108 151-261 9-131 (386)
116 2fv2_A RCD1 required for cell 34.5 95 0.0032 31.3 7.7 81 205-285 72-158 (268)
117 3c2g_A SYS-1 protein; beta-cat 27.3 3.6E+02 0.012 28.6 10.7 115 169-284 264-379 (619)
118 3ibv_A Exportin-T; karyopherin 27.1 1.5E+02 0.0051 35.4 9.2 92 159-254 205-301 (980)
119 1upk_A MO25 protein; transfera 25.8 3E+02 0.01 28.7 9.9 113 147-260 165-284 (341)
120 3o2t_A Symplekin; heat repeat, 24.4 5.2E+02 0.018 27.3 11.8 106 495-607 62-182 (386)
121 3gwk_C SAG1039, putative uncha 21.8 3.1E+02 0.01 22.2 7.7 28 26-53 50-77 (98)
No 1
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=6.3e-40 Score=368.26 Aligned_cols=406 Identities=15% Similarity=0.176 Sum_probs=316.4
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhh-cCChhhHHHHHhcCChHHHHHhhccC-ChHHHHHHHHHHHHhcC-CCcch
Q 037612 147 LIWEQVAILYTAGSLEHKSDAAASLVSLA-RDNDRYGKLIIEEGGVGPLLKLVKEG-KPEGQENAARAIGLLGR-DPESV 223 (663)
Q Consensus 147 ~v~~li~~L~~~G~~e~k~~AA~~L~~La-~~~~~~~~~Ive~G~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~-~~~~~ 223 (663)
-+.++|..|++ ++.+.+..|+.+++.|. .+.....+.|++.|+||+||+||++. ++.+|++|+|||+||+. +++++
T Consensus 58 ~i~~~v~~l~s-~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 58 SVEDIVKGINS-NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp CHHHHHHHHTS-SCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 35677999999 99999999999999754 44344578999999999999999855 58999999999999984 77899
Q ss_pred HHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHH
Q 037612 224 EHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHA 303 (663)
Q Consensus 224 ~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~ 303 (663)
..|+++|+||+|+++|+++++++++.|+|+|+||+.+++++|+.+.+.|++++|+.+|.+......... .+..
T Consensus 137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~-------~~~~ 209 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG-------YLRN 209 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHH-------HHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHH-------HHHH
Confidence 999999999999999999999999999999999999899999999999999999999987643221110 1111
Q ss_pred HHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCC
Q 037612 304 VVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQD 383 (663)
Q Consensus 304 lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~ 383 (663)
+.++..+.+. +.... .....+ ..++.
T Consensus 210 a~~~L~nl~~---~~~~~------------------------~~~~~~--~~~lp------------------------- 235 (510)
T 3ul1_B 210 LTWTLSNLCR---NKNPA------------------------PPLDAV--EQILP------------------------- 235 (510)
T ss_dssp HHHHHHHHHC---CCSSC------------------------CCHHHH--HHHHH-------------------------
T ss_pred HHHHHHHHhh---cccch------------------------hHHHHH--HhHHH-------------------------
Confidence 2222111110 00000 000000 00000
Q ss_pred ccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHH
Q 037612 384 NNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQY 463 (663)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~ 463 (663)
.+. +....+|++ ++..|+++|++|+.++......+.+.|+++.|+.+|.+.+..++.
T Consensus 236 ---------~L~----------~LL~~~~~~----v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~ 292 (510)
T 3ul1_B 236 ---------TLV----------RLLHHNDPE----VLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT 292 (510)
T ss_dssp ---------HHH----------HHTTCSCHH----HHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHH
T ss_pred ---------HHH----------HHHhcCCHH----HHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhh
Confidence 000 011123543 588999999999999988889999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhh-----HhhccHHHH
Q 037612 464 NSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKA-----TETRMIVPL 538 (663)
Q Consensus 464 ~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~-----~e~~~I~pL 538 (663)
.++++|++|+...+ +.++..+ -.++++.|+.++.+.+++++..++.+|++|+..... .+.++||+|
T Consensus 293 ~al~aL~nl~~~~~---~~~~~i~------~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~L 363 (510)
T 3ul1_B 293 PALRAIGNIVTGTD---EQTQKVI------DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFL 363 (510)
T ss_dssp HHHHHHHHHTTSCH---HHHHHHH------HTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHhhcCCH---HHHHHHh------hccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHH
Confidence 99999999975543 3333221 135677888999999999999999999999875333 346899999
Q ss_pred HHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhc---CCCChH-
Q 037612 539 VKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIAL---HVPDSE- 614 (663)
Q Consensus 539 V~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~---~~~~~~- 614 (663)
+.+|.+++++++++|+|||+|++++++ .++...+++.|+|++|+.||+++++.++..++.+|.++.. +.++.+
T Consensus 364 v~lL~~~~~~v~~~Aa~aL~Nl~~~~~---~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~ 440 (510)
T 3ul1_B 364 VGVLSKADFKTQKEAAWAITNYTSGGT---VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEK 440 (510)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHHHHCC---HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHccCC---HHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHH
Confidence 999999999999999999999998764 6788899999999999999999999888889999988852 334433
Q ss_pred ---HHHhccchhhhhhccccccccccCCcHHHHHHHHHHHHhhhh
Q 037612 615 ---DLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLELYQS 656 (663)
Q Consensus 615 ---~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~le~~~~ 656 (663)
.|.+.|++..++ .+|.|.++++|.+|..++|.|++
T Consensus 441 ~~~~iee~ggl~~ie-------~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 441 LSIMIEECGGLDKIE-------ALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp HHHHHHHTTHHHHHH-------HGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCcHHHHH-------HHHcCCCHHHHHHHHHHHHHHCC
Confidence 355667766665 56888999999999999999986
No 2
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=9.9e-39 Score=359.76 Aligned_cols=405 Identities=15% Similarity=0.171 Sum_probs=315.3
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhh-cCChhhHHHHHhcCChHHHHHhhccC-ChHHHHHHHHHHHHhcC-CCcchH
Q 037612 148 IWEQVAILYTAGSLEHKSDAAASLVSLA-RDNDRYGKLIIEEGGVGPLLKLVKEG-KPEGQENAARAIGLLGR-DPESVE 224 (663)
Q Consensus 148 v~~li~~L~~~G~~e~k~~AA~~L~~La-~~~~~~~~~Ive~G~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~-~~~~~~ 224 (663)
+.+++..+++ ++.+.+..|+..++.|. .++....+.|++.|+||+||++|+.+ ++..|..|+|+|+||+. +++++.
T Consensus 78 l~~lv~~l~s-~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 78 VEDIVKGINS-NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp HHHHHHHHTS-SCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4456889999 99999999999998864 44444578899999999999999865 58999999999999996 567889
Q ss_pred HHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHH
Q 037612 225 HMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAV 304 (663)
Q Consensus 225 ~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~l 304 (663)
.++++|+||+|+++|+++++++++.|+|+|+||+.+++++|+.+.+.|++++|+.+|........... .+..+
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~-------~~~~a 229 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG-------YLRNL 229 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHH-------HHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHH-------HHHHH
Confidence 99999999999999999999999999999999999899999999999999999999987642221110 11222
Q ss_pred HHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCc
Q 037612 305 VVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDN 384 (663)
Q Consensus 305 v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~ 384 (663)
.++..+.+. +..+. .....+ ..++.
T Consensus 230 ~~~L~nl~~---~~~~~------------------------~~~~~~--~~~lp-------------------------- 254 (529)
T 3tpo_A 230 TWTLSNLCR---NKNPA------------------------PPLDAV--EQILP-------------------------- 254 (529)
T ss_dssp HHHHHHHHC---CCTTC------------------------CCHHHH--HHHHH--------------------------
T ss_pred HHHHHHHHh---cccch------------------------hhHHHH--hhHHH--------------------------
Confidence 222222111 00000 000000 00000
Q ss_pred cccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHH
Q 037612 385 NVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYN 464 (663)
Q Consensus 385 ~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~ 464 (663)
.+. +....+|++ ++..|++||.+++.++......+.+.|+++.|+.+|.+.+..++..
T Consensus 255 --------~L~----------~LL~~~~~~----v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~ 312 (529)
T 3tpo_A 255 --------TLV----------RLLHHNDPE----VLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 312 (529)
T ss_dssp --------HHH----------HHTTSSCHH----HHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHH
T ss_pred --------HHH----------HHhcCCcHH----HHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHH
Confidence 000 011124554 5889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhh-----HhhccHHHHH
Q 037612 465 SAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKA-----TETRMIVPLV 539 (663)
Q Consensus 465 aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~-----~e~~~I~pLV 539 (663)
++++|++|+.+. ++.+.... -.++++.|+.++.+.+++++..|+.+|++|+..... .+.++||+|+
T Consensus 313 a~~aL~nl~~~~---~~~~~~i~------~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv 383 (529)
T 3tpo_A 313 ALRAIGNIVTGT---DEQTQKVI------DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 383 (529)
T ss_dssp HHHHHHHHTTSC---HHHHHHHH------HTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHccc---hHHHHHHh------hcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHH
Confidence 999999997543 33333221 135778899999999999999999999999875332 3468999999
Q ss_pred HhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhc---CCCChH--
Q 037612 540 KLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIAL---HVPDSE-- 614 (663)
Q Consensus 540 ~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~---~~~~~~-- 614 (663)
.+|.+++++++++|+|||+|++++++ .++...+++.|+|++|+.||.++++.++..++.+|.++.. ..++.+
T Consensus 384 ~lL~~~~~~v~~~A~~aL~nl~~~~~---~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~ 460 (529)
T 3tpo_A 384 GVLSKADFKTQKAAAWAITNYTSGGT---VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKL 460 (529)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHHHSC---HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcCCC---HHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHH
Confidence 99999999999999999999997663 6888999999999999999999999888889999988842 333332
Q ss_pred --HHHhccchhhhhhccccccccccCCcHHHHHHHHHHHHhhhh
Q 037612 615 --DLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLELYQS 656 (663)
Q Consensus 615 --~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~le~~~~ 656 (663)
.|.+.|++..++ .+|+|.++++|.+|..++|.|++
T Consensus 461 ~~~iee~ggl~~ie-------~Lq~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 461 SIMIEECGGLDKIE-------ALQRHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp HHHHHHTTCHHHHT-------GGGGCSSHHHHHHHHHHHHHHC-
T ss_pred HHHHHHCCcHHHHH-------HHHcCCCHHHHHHHHHHHHHHCC
Confidence 355667766665 56889999999999999999986
No 3
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.9e-36 Score=354.43 Aligned_cols=404 Identities=15% Similarity=0.141 Sum_probs=309.1
Q ss_pred ccccHHHHHHHHHhhhc-----chHHHHhhccccCCCCccccCCCCcccchhhHhHHHHHHHHhccCC--CHHHHHHHHH
Q 037612 97 PAAAFRKMSSQLENSIG-----DVSWLLRVSASAEDRDDEYLGLPPIAANEPILCLIWEQVAILYTAG--SLEHKSDAAA 169 (663)
Q Consensus 97 ~~~~l~~l~~~L~~~~~-----~~~~ll~~s~~~~~~~~~~~~~p~ia~~~~i~~~v~~li~~L~~~G--~~e~k~~AA~ 169 (663)
..+ ++.|..+|.+... .+..|.+++...++ ....|++ ..+.+..++..++..|.+ + +.+.+.+|++
T Consensus 329 ~~g-v~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~----d~~~~~~-~~g~i~~Lv~~l~~lL~~-~~~d~~v~~~Ave 401 (810)
T 3now_A 329 EQG-VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQ----DAAIRPF-GDGAALKLAEACRRFLIK-PGKDKDIRRWAAD 401 (810)
T ss_dssp HHH-HHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTT----TTSCCSS-TTTHHHHHHHHHHHHHHC-SSCCSSHHHHHHH
T ss_pred HcC-cHHHHHHHcCCCHHHHHHHHHHHHHhcccccc----Cccccch-hhccHHHHHHHHHHHhcC-CCCCHHHHHHHHH
Confidence 444 5888888854321 13334444322110 1123343 346677788888999998 7 8899999999
Q ss_pred HHHHhhcCChhhHHHHH-hcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCc---------------------------
Q 037612 170 SLVSLARDNDRYGKLII-EEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPE--------------------------- 221 (663)
Q Consensus 170 ~L~~La~~~~~~~~~Iv-e~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~--------------------------- 221 (663)
+|.+|+.+ +..+..++ +.|+||+||+||+++++.+|..|+|+|.||+.+.+
T Consensus 402 aLayLS~~-~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~ 480 (810)
T 3now_A 402 GLAYLTLD-AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDD 480 (810)
T ss_dssp HHHHHTTS-HHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHH
T ss_pred HHHHHhCC-cHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCcccccccc
Confidence 99999976 44555555 68999999999999999999999999999997432
Q ss_pred ---ch---HHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHh
Q 037612 222 ---SV---EHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIV 295 (663)
Q Consensus 222 ---~~---~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~ 295 (663)
++ +.|+++|+||+|+++|+++++++|++|+|+|+|||. ++++|..+.+.|+||+|+.+|++|+.
T Consensus 481 ~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~--------- 550 (810)
T 3now_A 481 VDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTE--------- 550 (810)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCH---------
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCH---------
Confidence 22 789999999999999999999999999999999996 57899999999999999999976530
Q ss_pred hhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCc
Q 037612 296 SKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGT 375 (663)
Q Consensus 296 ~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~ 375 (663)
T Consensus 551 -------------------------------------------------------------------------------- 550 (810)
T 3now_A 551 -------------------------------------------------------------------------------- 550 (810)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcC-ChhhhHH-HhhhccHHHHHHH
Q 037612 376 DVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKG-NSPICRS-ITESRALLCFAVL 453 (663)
Q Consensus 376 ~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~g-n~~~~~~-I~esgal~~L~~L 453 (663)
..|..|++||.+|+.+ ++...-. ....+++++|+.|
T Consensus 551 ------------------------------------------~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~L 588 (810)
T 3now_A 551 ------------------------------------------KGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNL 588 (810)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHT
T ss_pred ------------------------------------------HHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHH
Confidence 1367889999999874 3332110 0124699999999
Q ss_pred hhcCCh-hHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhH--
Q 037612 454 LEKGPE-DVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKAT-- 530 (663)
Q Consensus 454 L~~~~~-~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~-- 530 (663)
|.++.. ..+++|+|||.||+...+ +.++.+.. .++++.|+.++.+.++.++.+|+.+|+||+......
T Consensus 589 L~~~~~~l~~~eAl~AL~NLa~~~d---~~~~~Ii~------aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~ 659 (810)
T 3now_A 589 LQQDCTALENFESLMALTNLASMNE---SVRQRIIK------EQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKM 659 (810)
T ss_dssp TSTTSCHHHHHHHHHHHHHHTTSCH---HHHHHHHH------TTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHHHhcCCH---HHHHHHHH------cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHH
Confidence 997644 556899999999986643 44443221 357899999999999999999999999999864432
Q ss_pred --h-hccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHH-cCCHHHHHHHHhcCChhHHHHHHHHHHHH
Q 037612 531 --E-TRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIIS-AGGAKHLVQLVYFGEQIVQLSALVLLCYI 606 (663)
Q Consensus 531 --e-~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~-~ggi~~Lv~LL~~~~~~~q~~Al~~L~~l 606 (663)
+ .+.+++||.||++.+..++++|+|||++++++. .+++++|++ .||+++|++||.+++..+|..|+++|+|+
T Consensus 660 ~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s----~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL 735 (810)
T 3now_A 660 FEGNNDRVKFLALLCEDEDEETATACAGALAIITSVS----VKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNM 735 (810)
T ss_dssp HHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHC----HHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC----HHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 2 478999999999999999999999999998642 577889999 99999999999999999999999999999
Q ss_pred hcCCCC-hHHHHhccchhhhhhccccccccccCCcHHHHHHHHHHHHhh
Q 037612 607 ALHVPD-SEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLELY 654 (663)
Q Consensus 607 a~~~~~-~~~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~le~~ 654 (663)
+.+.++ ...|.++|+++.|..-.+.. -..++.+-+.+.+++..+..|
T Consensus 736 ~~~s~e~~~~l~e~G~i~~L~~LL~~~-d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 736 INAGEEIAKKLFETDIMELLSGLGQLP-DDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp HTTCHHHHHHHHTSTHHHHHTTSCCCT-TSTTHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHhCc-ccCcHHHHHHHHHHHHHHHhC
Confidence 875543 56799999999998322211 011223444455555544443
No 4
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=1.4e-36 Score=336.88 Aligned_cols=377 Identities=13% Similarity=0.146 Sum_probs=295.2
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCC-CcchHHHH
Q 037612 149 WEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRD-PESVEHMI 227 (663)
Q Consensus 149 ~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~-~~~~~~iv 227 (663)
..++..|++ ++.+.|..|+++|.+|+..++.++..|++.|+||+||++|+++++..|+.|+++|.||+.+ ++++..|+
T Consensus 5 ~~lv~~L~s-~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 5 PKAVQYLSS-QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHS-SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHCC-CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 345889999 9999999999999999988788888999999999999999999999999999999999975 89999999
Q ss_pred HcCchHHHHHhhc-cCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHH
Q 037612 228 HSGVCLVFAKILK-EGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVV 306 (663)
Q Consensus 228 ~aGaIp~Lv~lL~-s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~ 306 (663)
++|+||+|+++|+ ++++++++.++|+|+||+.+ ++.|..+.+ |+||+|+.+|.... +.+ +
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~----s~~---~---------- 144 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPF----SGW---C---------- 144 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHH----HTC---C----------
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccc----ccc---c----------
Confidence 9999999999999 88999999999999999986 789998999 99999999995210 000 0
Q ss_pred hhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccc
Q 037612 307 ASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNV 386 (663)
Q Consensus 307 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~ 386 (663)
. +
T Consensus 145 --------------------~-----------------------------------------------------~----- 146 (457)
T 1xm9_A 145 --------------------D-----------------------------------------------------G----- 146 (457)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------c-----------------------------------------------------C-----
Confidence 0 0
Q ss_pred cccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhh-ccHHHHHHHhhc------CCh
Q 037612 387 KQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITES-RALLCFAVLLEK------GPE 459 (663)
Q Consensus 387 ~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~es-gal~~L~~LL~~------~~~ 459 (663)
...+.+|..++ .+...|++||+||+.+ +.+...+.+. |++++|+.+|++ .+.
T Consensus 147 ----------------~~~~~~e~~~~----~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~ 205 (457)
T 1xm9_A 147 ----------------NSNMSREVVDP----EVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDD 205 (457)
T ss_dssp -----------------------CCCH----HHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTC
T ss_pred ----------------ccchhcccccH----HHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCch
Confidence 00011122233 3688999999999987 8899999997 999999999986 356
Q ss_pred hHHHHHHHHHHHHhhhhh----ccHH-H----H--------hhhcCCC------------------------CchhHhHH
Q 037612 460 DVQYNSAMALMEITAVAE----KDAE-L----R--------RSAFKPN------------------------APACKAVV 498 (663)
Q Consensus 460 ~vq~~aa~AL~~i~a~a~----~~~~-~----r--------r~a~~~~------------------------~~a~~~vv 498 (663)
.++.+|+++|.+++...+ .... + | ...|... .-.-.+++
T Consensus 206 ~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 285 (457)
T 1xm9_A 206 KSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAI 285 (457)
T ss_dssp TTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHH
T ss_pred HHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchH
Confidence 788999999999862110 0000 0 0 0011000 00113468
Q ss_pred HHHHHHhhhcC-cchhhHHHHHHHHhhhch---h--h-----HhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCC
Q 037612 499 DQLFRIIEKAD-SDLLIPCIKAVGNLARTF---K--A-----TETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYL 567 (663)
Q Consensus 499 ~qL~~ll~~~~-~~l~~~a~~aLg~La~~~---~--~-----~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~ 567 (663)
+.|+.++.+.+ +++++.|+.+|+||+..- . . .+.++||+||++|.+++++++++|+|+|.|++.+.
T Consensus 286 ~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--- 362 (457)
T 1xm9_A 286 RTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--- 362 (457)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG---
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH---
Confidence 88999998765 889999999999998631 1 1 13689999999999999999999999999998542
Q ss_pred ChhhHHHHHHcCCHHHHHHHHhcCCh------hHHHHHHHHHHHHhcCCCC-hHHHHhccchhhhhhccccccccccCCc
Q 037612 568 HSDHSKAIISAGGAKHLVQLVYFGEQ------IVQLSALVLLCYIALHVPD-SEDLAQAEVLTVLEWTSKQSHMTQDETV 640 (663)
Q Consensus 568 ~~~~~~~Iv~~ggi~~Lv~LL~~~~~------~~q~~Al~~L~~la~~~~~-~~~i~~~~vl~~L~~~~~~~~~~q~~~~ 640 (663)
+.+.++..|+|++||+||..+++ .++..++.+|+++..+.++ ...+.++|+++.|+ .+..++..
T Consensus 363 ---~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~------~L~~~~~~ 433 (457)
T 1xm9_A 363 ---LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNII------NLCRSSAS 433 (457)
T ss_dssp ---GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHH------HHHHCTTC
T ss_pred ---HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHH------HHHcCCCc
Confidence 34456667999999999998753 4677899999999766555 45688999999998 44444347
Q ss_pred HHHHHHHHHHHHhhhh
Q 037612 641 DPLLQDAKSRLELYQS 656 (663)
Q Consensus 641 ~~l~~~a~~~le~~~~ 656 (663)
+.++.+|...|+.|..
T Consensus 434 ~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 434 PKAAEAARLLLSDMWS 449 (457)
T ss_dssp HHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHc
Confidence 8899999999999876
No 5
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=2.7e-35 Score=334.43 Aligned_cols=381 Identities=17% Similarity=0.107 Sum_probs=283.3
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC--CCcchHHH
Q 037612 149 WEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR--DPESVEHM 226 (663)
Q Consensus 149 ~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~--~~~~~~~i 226 (663)
..+|..|++ ++.+.|.+||++|.+|+..++.+|..|++.|+||+||+||++++..+|++|+|||.||+. +++|+..|
T Consensus 51 ~~LV~~L~s-~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I 129 (584)
T 3l6x_A 51 PEVIAMLGF-RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAI 129 (584)
T ss_dssp HHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHH
T ss_pred HHHHHHHCC-CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 344889999 999999999999999998889999999999999999999999999999999999999997 48999999
Q ss_pred HHcCchHHHHHhhcc-CChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhc---cCccchhhhHHHhhhhhhHH
Q 037612 227 IHSGVCLVFAKILKE-GPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLA---FETVQEHSKYAIVSKATSIH 302 (663)
Q Consensus 227 v~aGaIp~Lv~lL~s-~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~---sgt~~~~s~~~v~~~~~sl~ 302 (663)
+++|+||+||++|++ ++.+++++++++|.||+. +++++..|++ ++||+||.||. +|........ .+ +
T Consensus 130 ~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~----~k--~- 200 (584)
T 3l6x_A 130 KNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNED----CK--P- 200 (584)
T ss_dssp HHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------------
T ss_pred HHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhccccccccccccc----cc--c-
Confidence 999999999999997 578999999999999997 5788888886 57999999983 2211000000 00 0
Q ss_pred HHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCC
Q 037612 303 AVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQ 382 (663)
Q Consensus 303 ~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~ 382 (663)
.......++.++.+... |+. ....
T Consensus 201 ----------------------------------------~~~~d~~V~~nAa~~L~---------NLs-------~~~~ 224 (584)
T 3l6x_A 201 ----------------------------------------RHIEWESVLTNTAGCLR---------NVS-------SERS 224 (584)
T ss_dssp -----------------------------------------CCCCHHHHHHHHHHHH---------HHT-------SSCH
T ss_pred ----------------------------------------cccccHHHHHHHHHHHH---------HHh-------cCCH
Confidence 00001122222222110 000 0000
Q ss_pred CccccccccccccccccccCCcCCCCccCChhHH------------HHHHHHHHHHHHHHhcCChhh-------------
Q 037612 383 DNNVKQNHQSQHQHGLSNYGANTKGRELEDPATK------------AYMKAMAARALWHLAKGNSPI------------- 437 (663)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~------------~~lk~~Aa~AL~~La~gn~~~------------- 437 (663)
...+.....+|.+ ++-+. .+.++.|..+|+||+.+....
T Consensus 225 ---------~~R~~i~~~~Gli-------~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~ 288 (584)
T 3l6x_A 225 ---------EARRKLRECDGLV-------DALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPN 288 (584)
T ss_dssp ---------HHHHHHHHSTTHH-------HHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-------
T ss_pred ---------HHHHHHHHcCCcH-------HHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhccc
Confidence 0011111112221 22221 146678999999999862111
Q ss_pred ------------hHHHhhhccHHHHHHHhh-cCChhHHHHHHHHHHHHhhhhhcc-HHHHhhhcCCCCchhHhHHHHHHH
Q 037612 438 ------------CRSITESRALLCFAVLLE-KGPEDVQYNSAMALMEITAVAEKD-AELRRSAFKPNAPACKAVVDQLFR 503 (663)
Q Consensus 438 ------------~~~I~esgal~~L~~LL~-~~~~~vq~~aa~AL~~i~a~a~~~-~~~rr~a~~~~~~a~~~vv~qL~~ 503 (663)
...+.+.++++.|+.||+ +.+++++++|+|||+++|++.... ..+|+ ++.. ..+++.|++
T Consensus 289 ~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~-~v~~-----~~glp~Lv~ 362 (584)
T 3l6x_A 289 VANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRS-ALRQ-----EKALSAIAD 362 (584)
T ss_dssp -------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHH-HHTS-----HHHHHHHHH
T ss_pred ccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHH-HHHH-----cCcHHHHHH
Confidence 112234567788999996 567999999999999998764222 23332 2221 357899999
Q ss_pred HhhhcCcchhhHHHHHHHHhhhchhhH---hhccHHHHHHhcccC--------CHHHHHHHHHHHHhcccCCCCCChhhH
Q 037612 504 IIEKADSDLLIPCIKAVGNLARTFKAT---ETRMIVPLVKLLDER--------EAEVSREASIALTKFACSDNYLHSDHS 572 (663)
Q Consensus 504 ll~~~~~~l~~~a~~aLg~La~~~~~~---e~~~I~pLV~LL~~~--------~~~v~~eAa~AL~~la~~~~~~~~~~~ 572 (663)
|+.+++++++..++.+|+||+....+. +.++||+||++|..+ ..++...|+++|.|+++++ +++.
T Consensus 363 LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~----~~~~ 438 (584)
T 3l6x_A 363 LLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAEN----LEAA 438 (584)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTC----HHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCC----HHHH
Confidence 999999999999999999999875543 368999999999766 4788999999999998654 6889
Q ss_pred HHHHHcCCHHHHHHHHhcC--ChhHHHHHHHHHHHHhcCCCChHHHHhccc
Q 037612 573 KAIISAGGAKHLVQLVYFG--EQIVQLSALVLLCYIALHVPDSEDLAQAEV 621 (663)
Q Consensus 573 ~~Iv~~ggi~~Lv~LL~~~--~~~~q~~Al~~L~~la~~~~~~~~i~~~~v 621 (663)
+.|+++|||++|++||+++ ++.++..|..+||++..|.+.+..+.++|.
T Consensus 439 ~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk~G~ 489 (584)
T 3l6x_A 439 KKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGW 489 (584)
T ss_dssp HHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHTTTC
T ss_pred HHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHHHcCC
Confidence 9999999999999999987 777888999999999998888888887653
No 6
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=8.1e-35 Score=322.77 Aligned_cols=412 Identities=14% Similarity=0.114 Sum_probs=278.6
Q ss_pred cHHHHHHHHHhhhcc-----hHHHHhhccccCCCCccccCCCCcccchhhHhHHHHHHHHhccCCCHHHHHHHHHHHHHh
Q 037612 100 AFRKMSSQLENSIGD-----VSWLLRVSASAEDRDDEYLGLPPIAANEPILCLIWEQVAILYTAGSLEHKSDAAASLVSL 174 (663)
Q Consensus 100 ~l~~l~~~L~~~~~~-----~~~ll~~s~~~~~~~~~~~~~p~ia~~~~i~~~v~~li~~L~~~G~~e~k~~AA~~L~~L 174 (663)
+++.++..|.+...+ ...|-+++...++... .+...+.+.. ++..|++ ++.+.+..|+++|.+|
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~------~i~~~g~i~~----Lv~lL~s-~~~~~~~~A~~aL~nL 71 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQ------QVYQLGGICK----LVDLLRS-PNQNVQQAAAGALRNL 71 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHH------HHHHTTHHHH----HHHHTTS-SCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHH------HHHHcCCHHH----HHHHHcC-CCHHHHHHHHHHHHHH
Confidence 578889999764332 3444455532221000 1112223332 3889999 9999999999999999
Q ss_pred hcCChhhHHHHHhcCChHHHHHhhc-cCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhh--------ccC---
Q 037612 175 ARDNDRYGKLIIEEGGVGPLLKLVK-EGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKIL--------KEG--- 242 (663)
Q Consensus 175 a~~~~~~~~~Ive~G~Ip~Lv~LL~-sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL--------~s~--- 242 (663)
+.++++++..|++.|+||+|+++|+ ++++..|+.|+|+|+||+.+++++..|++ |+||+|+++| +++
T Consensus 72 a~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~ 150 (457)
T 1xm9_A 72 VFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNM 150 (457)
T ss_dssp HSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC------
T ss_pred hcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccch
Confidence 9988999999999999999999999 88999999999999999999999999999 9999999999 333
Q ss_pred -----ChhHHHHHHHHHHHHhcCChhHHHHHHhC-CcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCcccc
Q 037612 243 -----PMKVQAVVAWAVSELAGNYPKCQDLFAQH-NIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANA 316 (663)
Q Consensus 243 -----~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~-g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~ 316 (663)
+++++..|+|+|+||+.+ ++++..+.+. |+||+|+.+|+++....+.. .+ .....+.+..+.+.
T Consensus 151 ~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~-----~~-~~e~a~~~L~nLs~--- 220 (457)
T 1xm9_A 151 SREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCD-----DK-SVENCMCVLHNLSY--- 220 (457)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTT-----CT-THHHHHHHHHHHTT---
T ss_pred hcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCc-----hH-HHHHHHHHHHhccc---
Confidence 345666999999999986 8999999997 99999999998642100000 00 00000000000000
Q ss_pred CCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccc
Q 037612 317 NGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQH 396 (663)
Q Consensus 317 ~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~ 396 (663)
. . ..+ ...+.. ......+....
T Consensus 221 ~---~---~~~--------------------------------------------------~~~~~~-~~~~~~~~~~~- 242 (457)
T 1xm9_A 221 R---L---DAE--------------------------------------------------VPTRYR-QLEYNARNAYT- 242 (457)
T ss_dssp T---H---HHH--------------------------------------------------SCCHHH-HHHHTC------
T ss_pred c---h---hcc--------------------------------------------------Ccchhh-hcccccccccc-
Confidence 0 0 000 000000 00000000000
Q ss_pred cccccCCcCCCCccCChhHHHHHHHHHHHHHHHHh----cCChhhhHHHhhhccHHHHHHHhhcC-ChhHHHHHHHHHHH
Q 037612 397 GLSNYGANTKGRELEDPATKAYMKAMAARALWHLA----KGNSPICRSITESRALLCFAVLLEKG-PEDVQYNSAMALME 471 (663)
Q Consensus 397 ~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La----~gn~~~~~~I~esgal~~L~~LL~~~-~~~vq~~aa~AL~~ 471 (663)
.....|..... . .+.+.. -+.+. ..++.....+.+.+++++|+.||++. ++++++.|+|||++
T Consensus 243 ~~~~~~~~~~~------~--~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~n 310 (457)
T 1xm9_A 243 EKSSTGCFSNK------S--DKMMNN----NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQN 310 (457)
T ss_dssp -----------------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred cccccchhhcc------c--hhhhhc----cccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 00000000000 0 000000 00011 12334556677899999999999865 68999999999999
Q ss_pred Hhhhhhcc-HHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhH---hhccHHHHHHhcccCC-
Q 037612 472 ITAVAEKD-AELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKAT---ETRMIVPLVKLLDERE- 546 (663)
Q Consensus 472 i~a~a~~~-~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~---e~~~I~pLV~LL~~~~- 546 (663)
||++.... ..+.|.++.. .++++.|++++.+++++++..++.+|.+|+...... +.++|||||++|...+
T Consensus 311 l~~~~~~~~~~~~~~~v~~-----~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~ 385 (457)
T 1xm9_A 311 LTASKGLMSSGMSQLIGLK-----EKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTG 385 (457)
T ss_dssp HTTCSSSHHHHHHHHHHTT-----SCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCS
T ss_pred hccCcCcchHHHHHHHHHH-----cCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCC
Confidence 99775433 2343333322 246899999999999999999999999999876554 3579999999998764
Q ss_pred -----HHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCCCC
Q 037612 547 -----AEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFG-EQIVQLSALVLLCYIALHVPD 612 (663)
Q Consensus 547 -----~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~-~~~~q~~Al~~L~~la~~~~~ 612 (663)
+++...+.++|.|+..++ .++...|.+.||+++|++|++++ ++.++..|.++|.++..|.+-
T Consensus 386 ~~~~~~~v~~~~l~~l~ni~~~~----~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l 453 (457)
T 1xm9_A 386 NTSNSEDILSSACYTVRNLMASQ----PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKEL 453 (457)
T ss_dssp CSTTHHHHHHHHHHHHHHHHTTC----THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTC
T ss_pred CCCCcHHHHHHHHHHHHHHHhcC----HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhh
Confidence 468889999999997654 47888999999999999999999 888888999999998766554
No 7
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=3.6e-34 Score=317.71 Aligned_cols=311 Identities=15% Similarity=0.140 Sum_probs=258.0
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCh----------HHHHHhhccCC--hH-----HH-------HHHHHHHH
Q 037612 159 GSLEHKSDAAASLVSLARDNDRYGKLIIEEGGV----------GPLLKLVKEGK--PE-----GQ-------ENAARAIG 214 (663)
Q Consensus 159 G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~I----------p~Lv~LL~sg~--~~-----~q-------~~Aa~AL~ 214 (663)
|+.+.+.+|+|+|.|++..++...+...+.|++ +.++++|.+.. .+ .. ..|+|+|+
T Consensus 94 ~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~ 173 (458)
T 3nmz_A 94 GSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLM 173 (458)
T ss_dssp CCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHH
Confidence 347999999999999999888878888888888 77888887642 22 33 39999999
Q ss_pred HhcCCCcchHHHHHcCchHHHHHhhcc-----------CChhHHHHHHHHHHHHhcCChhHHHHHHh-CCcHHHHHHHhc
Q 037612 215 LLGRDPESVEHMIHSGVCLVFAKILKE-----------GPMKVQAVVAWAVSELAGNYPKCQDLFAQ-HNIIRLLVGHLA 282 (663)
Q Consensus 215 nLs~~~~~~~~iv~aGaIp~Lv~lL~s-----------~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~-~g~I~~LV~LL~ 282 (663)
||+.++++|..|++.|++++|+++|.. .++.+|..|+|+|.||+.+++..+..+.. .|+||+||.||+
T Consensus 174 nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~ 253 (458)
T 3nmz_A 174 KLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK 253 (458)
T ss_dssp HHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGG
T ss_pred HhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHh
Confidence 999999999999999999999999952 23678999999999999877778887765 566999999997
Q ss_pred cCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCC
Q 037612 283 FETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTK 362 (663)
Q Consensus 283 sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~ 362 (663)
+++
T Consensus 254 s~~----------------------------------------------------------------------------- 256 (458)
T 3nmz_A 254 SES----------------------------------------------------------------------------- 256 (458)
T ss_dssp CSC-----------------------------------------------------------------------------
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 542
Q ss_pred cccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcC-ChhhhHHH
Q 037612 363 PVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKG-NSPICRSI 441 (663)
Q Consensus 363 ~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~g-n~~~~~~I 441 (663)
+ .++..|++||++|+.+ ++.+...|
T Consensus 257 --------------------------------------------------~----~v~~~A~~aL~nLs~~~~~~~k~~I 282 (458)
T 3nmz_A 257 --------------------------------------------------E----DLQQVIASVLRNLSWRADVNSKKTL 282 (458)
T ss_dssp --------------------------------------------------H----HHHHHHHHHHHHHTSSCCHHHHHHH
T ss_pred --------------------------------------------------H----HHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 1 2477899999999996 67888999
Q ss_pred hhhccHHHHHHH-hhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcc----hhhHH
Q 037612 442 TESRALLCFAVL-LEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSD----LLIPC 516 (663)
Q Consensus 442 ~esgal~~L~~L-L~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~----l~~~a 516 (663)
.+.|+++.|+.+ +++++.+++++++.|||+|+... .+.+..+. ...++++.|++++.+.++. ++..+
T Consensus 283 ~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~---~~nk~~I~-----~~~Gal~~Lv~LL~~~~~~~~~~v~~~A 354 (458)
T 3nmz_A 283 REVGSVKALMECALEVKKESTLKSVLSALWNLSAHC---TENKADIC-----AVDGALAFLVGTLTYRSQTNTLAIIESG 354 (458)
T ss_dssp HHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHC---HHHHHHHH-----HSTTHHHHHHHHTTCCCSSSTTHHHHHH
T ss_pred HHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCC---HHHHHHHH-----HhcCcHHHHHHHhcCCCCcchHHHHHHH
Confidence 999999999997 56678899999999999998632 22232211 0246899999999987653 88999
Q ss_pred HHHHHHhhh----chhh----HhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHH
Q 037612 517 IKAVGNLAR----TFKA----TETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLV 588 (663)
Q Consensus 517 ~~aLg~La~----~~~~----~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL 588 (663)
+.+|.||+. +... .+.++||+||.+|.+++++++++|+|||+|++.+. +++..+|++.|||++|+.||
T Consensus 355 ~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~----~~~~~~i~~~G~I~~Lv~LL 430 (458)
T 3nmz_A 355 GGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN----PKDQEALWDMGAVSMLKNLI 430 (458)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSC----HHHHHHHHHHTHHHHHHTTT
T ss_pred HHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCC----HHHHHHHHHCCCHHHHHHHH
Confidence 999999985 3333 34689999999999999999999999999998543 58888999999999999999
Q ss_pred hcCChhHHHHHHHHHHHHhcCCCC
Q 037612 589 YFGEQIVQLSALVLLCYIALHVPD 612 (663)
Q Consensus 589 ~~~~~~~q~~Al~~L~~la~~~~~ 612 (663)
+++++.++..|+++|.+|+.+.+.
T Consensus 431 ~s~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 431 HSKHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp TCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred hCCCHHHHHHHHHHHHHHHcCCHh
Confidence 999998999999999999877654
No 8
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=8.2e-33 Score=309.47 Aligned_cols=401 Identities=18% Similarity=0.211 Sum_probs=315.0
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhhcCCh-hhHHHHHhcCChHHHHHhhccCC-hHHHHHHHHHHHHhcCC-CcchH
Q 037612 148 IWEQVAILYTAGSLEHKSDAAASLVSLARDND-RYGKLIIEEGGVGPLLKLVKEGK-PEGQENAARAIGLLGRD-PESVE 224 (663)
Q Consensus 148 v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~-~~~~~Ive~G~Ip~Lv~LL~sg~-~~~q~~Aa~AL~nLs~~-~~~~~ 224 (663)
+..++..|++ ++.+.+..|+++|.+++..++ .++..+++.|+||+|+++|++++ +..|+.|+|+|++|+.+ ++++.
T Consensus 76 l~~lv~~L~s-~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 76 LPAMIGGVYS-DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp HHHHHHHHTS-SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 4455889999 999999999999999976543 67888999999999999999887 99999999999999974 78999
Q ss_pred HHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHH
Q 037612 225 HMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAV 304 (663)
Q Consensus 225 ~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~l 304 (663)
.+++.|+||+|+++|++++++++..|+|+|++|+.+++..+..+.+.|++++|+.+|........... ...++
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~-------a~~~L 227 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRN-------ATWTL 227 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHH-------HHHHH
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHH-------HHHHH
Confidence 99999999999999999999999999999999999888999999999999999999953321111111 11111
Q ss_pred HHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCc
Q 037612 305 VVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDN 384 (663)
Q Consensus 305 v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~ 384 (663)
....... +.. ....+ .++. +
T Consensus 228 ~~L~~~~-------~~~-------------------------~~~~~---------------------------~~~l-~ 247 (528)
T 4b8j_A 228 SNFCRGK-------PQP-------------------------SFEQT---------------------------RPAL-P 247 (528)
T ss_dssp HHHHCSS-------SCC-------------------------CHHHH---------------------------TTHH-H
T ss_pred HHHHcCC-------CCC-------------------------cHHHH---------------------------HHHH-H
Confidence 1110000 000 00000 0000 0
Q ss_pred cccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHH
Q 037612 385 NVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYN 464 (663)
Q Consensus 385 ~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~ 464 (663)
.+...+ ..+|+ .++..|+++|++|+.++......+.+.|+++.|+.+|.+++++++..
T Consensus 248 --------~L~~lL----------~~~~~----~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~ 305 (528)
T 4b8j_A 248 --------ALARLI----------HSNDE----EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIP 305 (528)
T ss_dssp --------HHHHHT----------TCCCH----HHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHH
T ss_pred --------HHHHHH----------CCCCH----HHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHH
Confidence 000001 11344 35889999999999998888888999999999999999999999999
Q ss_pred HHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhc-CcchhhHHHHHHHHhhhchhh-----HhhccHHHH
Q 037612 465 SAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKA-DSDLLIPCIKAVGNLARTFKA-----TETRMIVPL 538 (663)
Q Consensus 465 aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~-~~~l~~~a~~aLg~La~~~~~-----~e~~~I~pL 538 (663)
|+++|.+|+... .+.++..+. .++++.|+.++.+. ++.++..|+.+|++|+..... .+.++||+|
T Consensus 306 a~~~L~nl~~~~---~~~~~~~~~------~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L 376 (528)
T 4b8j_A 306 ALRTVGNIVTGD---DAQTQCIID------HQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPL 376 (528)
T ss_dssp HHHHHHHHTTSC---HHHHHHHHT------TTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCC---HHHHHHHHH------hhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHH
Confidence 999999998543 344443332 35789999999998 889999999999999874322 245899999
Q ss_pred HHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCC------
Q 037612 539 VKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPD------ 612 (663)
Q Consensus 539 V~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~------ 612 (663)
+++|.+.+++++++|+|||+|++..++ +++...+++.|++++|+.+|..+++.++..++.+|+++....+.
T Consensus 377 ~~lL~~~~~~v~~~a~~aL~nl~~~~~---~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~ 453 (528)
T 4b8j_A 377 VNLLQTAEFDIKKEAAWAISNATSGGS---HDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAA 453 (528)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHSC---HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHcCCC---HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999999999999999999999997643 57888999999999999999999998899999999999754322
Q ss_pred ------hHHHHhccchhhhhhccccccccccCCcHHHHHHHHHHHHhhhhc
Q 037612 613 ------SEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLELYQSR 657 (663)
Q Consensus 613 ------~~~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~le~~~~~ 657 (663)
...+.+.|++..++ ..+.+.+++++.+|...++.|++.
T Consensus 454 ~~~~~~~~~i~~~~~~~~l~-------~L~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 454 GDVNVFSQMIDEAEGLEKIE-------NLQSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp CSCCHHHHHHHHTTHHHHHH-------HGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred ccccHHHHHHHHCCcHHHHH-------HHHcCCCHHHHHHHHHHHHHHCCC
Confidence 44567777777776 235678889999999999999873
No 9
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=5.2e-34 Score=307.00 Aligned_cols=274 Identities=15% Similarity=0.158 Sum_probs=230.7
Q ss_pred HHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhcc-----------CChHHHHHHHHHHHHhcCCCc-chHHHHH
Q 037612 161 LEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKE-----------GKPEGQENAARAIGLLGRDPE-SVEHMIH 228 (663)
Q Consensus 161 ~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~s-----------g~~~~q~~Aa~AL~nLs~~~~-~~~~iv~ 228 (663)
.+.+.+|+++|.+++.+ +++|+.|++.|++++|+.||.+ .++..|++|+|+|.||+.+++ ++..|..
T Consensus 46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35666899999999976 8899999999999999999953 236799999999999997654 7777765
Q ss_pred c-CchHHHHHhhccCChhHHHHHHHHHHHHhcC-ChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHH
Q 037612 229 S-GVCLVFAKILKEGPMKVQAVVAWAVSELAGN-YPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVV 306 (663)
Q Consensus 229 a-GaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~-~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~ 306 (663)
. |+||+||++|+++++++++.|+|+|.||+.. ++++|..+.+.|+||+||++|....
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~--------------------- 183 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK--------------------- 183 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC---------------------
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC---------------------
Confidence 5 5599999999999999999999999999974 5789999999999999999863210
Q ss_pred hhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccc
Q 037612 307 ASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNV 386 (663)
Q Consensus 307 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~ 386 (663)
T Consensus 184 -------------------------------------------------------------------------------- 183 (354)
T 3nmw_A 184 -------------------------------------------------------------------------------- 183 (354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHh-hhccHHHHHHHhhcCCh----hH
Q 037612 387 KQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSIT-ESRALLCFAVLLEKGPE----DV 461 (663)
Q Consensus 387 ~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~-esgal~~L~~LL~~~~~----~v 461 (663)
++ .+++.|+.|||+|+.+++.++..|. +.|++++|+.+|+++++ ++
T Consensus 184 -------------------------~~----~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v 234 (354)
T 3nmw_A 184 -------------------------KE----STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAI 234 (354)
T ss_dssp -------------------------CH----HHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHH
T ss_pred -------------------------CH----HHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHH
Confidence 11 2467889999999998889988888 79999999999998765 59
Q ss_pred HHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHh
Q 037612 462 QYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKL 541 (663)
Q Consensus 462 q~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~L 541 (663)
+++|+|+|++|+.....+++.|+. + .+.++||+||++
T Consensus 235 ~~~A~~aL~nLs~~~a~~~~~~~~------------------i-------------------------~~~g~i~~Lv~l 271 (354)
T 3nmw_A 235 IESGGGILRNVSSLIATNEDHRQI------------------L-------------------------RENNCLQTLLQH 271 (354)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHH------------------H-------------------------HTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCHHHHHH------------------H-------------------------HHcCCHHHHHHH
Confidence 999999999998511112333321 1 135789999999
Q ss_pred cccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCC
Q 037612 542 LDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPD 612 (663)
Q Consensus 542 L~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~ 612 (663)
|++++.+++++|+|||+|++.+. +++...|++.|+|++|++||+++++.++..|+++|++|+.+.++
T Consensus 272 L~~~~~~v~~~A~~aL~nLa~~~----~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 272 LKSHSLTIVSNACGTLWNLSARN----PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp TTCSCHHHHHHHHHHHHHHTSSC----HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HcCCChHHHHHHHHHHHHHhCCC----HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998543 57888999999999999999999998999999999999987665
No 10
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=305.36 Aligned_cols=363 Identities=16% Similarity=0.140 Sum_probs=276.9
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhcc------------CChHHHHHHHHHHHHhc-
Q 037612 151 QVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKE------------GKPEGQENAARAIGLLG- 217 (663)
Q Consensus 151 li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~s------------g~~~~q~~Aa~AL~nLs- 217 (663)
++..|.+ .+.+ +....|.++... ++.+..+++.|+||.||++|+. +++..|.+|+|||.||+
T Consensus 37 l~~~~~~-~~~~---~~~~~ll~~~~~-~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~ 111 (458)
T 3nmz_A 37 LLSMLGT-HDKD---DMSRTLLAMSSS-QDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIH 111 (458)
T ss_dssp ---------CCH---HHHHHHHHHHSS-TTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCHH---HHHHHHHHHHcC-CcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHc
Confidence 3555555 4433 478899999875 5578899999999999999996 34799999999999999
Q ss_pred CCCcchHHHHHcCch----------HHHHHhhccCC--hh-----HHH-------HHHHHHHHHhcCChhHHHHHHhCCc
Q 037612 218 RDPESVEHMIHSGVC----------LVFAKILKEGP--MK-----VQA-------VVAWAVSELAGNYPKCQDLFAQHNI 273 (663)
Q Consensus 218 ~~~~~~~~iv~aGaI----------p~Lv~lL~s~~--~~-----vq~-------~Aa~aL~nLA~~~~~~r~~i~~~g~ 273 (663)
++++.+....+.|++ +.++++|++.. ++ +++ +|+|+|.||+. ++++|+.+.+.|+
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~ 190 (458)
T 3nmz_A 112 SQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGG 190 (458)
T ss_dssp HSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTH
T ss_pred cCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCC
Confidence 578999999999999 88888887652 33 444 99999999986 5899999999999
Q ss_pred HHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHh
Q 037612 274 IRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTN 353 (663)
Q Consensus 274 I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 353 (663)
+++|+.||..+. . . +
T Consensus 191 l~~Lv~LL~~~~----~---~-----------~----------------------------------------------- 205 (458)
T 3nmz_A 191 LQAIAELLQVDC----E---M-----------Y----------------------------------------------- 205 (458)
T ss_dssp HHHHHHHHHHHH----H---H-----------S-----------------------------------------------
T ss_pred HHHHHHHHhhhh----c---c-----------c-----------------------------------------------
Confidence 999999996421 0 0 0
Q ss_pred hhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcC
Q 037612 354 TMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKG 433 (663)
Q Consensus 354 ~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~g 433 (663)
+. . .+. ....++..|+++|.||+.+
T Consensus 206 ---------------------------~~----~-----------------------~~~-~~~~l~~~Aa~aL~nLa~~ 230 (458)
T 3nmz_A 206 ---------------------------GL----T-----------------------NDH-YSITLRRYAGMALTNLTFG 230 (458)
T ss_dssp ---------------------------TT----C-----------------------CCH-HHHHHHHHHHHHHHHHHTT
T ss_pred ---------------------------cc----c-----------------------cCC-CCHHHHHHHHHHHHHHhCC
Confidence 00 0 000 0124799999999999999
Q ss_pred ChhhhHHHhh-hccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHh-hhcCcc
Q 037612 434 NSPICRSITE-SRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRII-EKADSD 511 (663)
Q Consensus 434 n~~~~~~I~e-sgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll-~~~~~~ 511 (663)
+..+...|.+ .|+++.|+.||+++++++|.+|+|||++|+... +.+.|.... -.++++.|++++ .+++++
T Consensus 231 ~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~--~~~~k~~I~------~~GaI~~LV~lLl~s~~~~ 302 (458)
T 3nmz_A 231 DVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRA--DVNSKKTLR------EVGSVKALMECALEVKKES 302 (458)
T ss_dssp CHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSC--CHHHHHHHH------HTTHHHHHHHHHTTCCSHH
T ss_pred CcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC--CHHHHHHHH------HcCCHHHHHHHHhcCCCHH
Confidence 8878777754 566999999999999999999999999997541 233343211 136899999975 456788
Q ss_pred hhhHHHHHHHHhhh-chhhH-----hhccHHHHHHhcccCCH----HHHHHHHHHHHhccc--CCCCCChhhHHHHHHcC
Q 037612 512 LLIPCIKAVGNLAR-TFKAT-----ETRMIVPLVKLLDEREA----EVSREASIALTKFAC--SDNYLHSDHSKAIISAG 579 (663)
Q Consensus 512 l~~~a~~aLg~La~-~~~~~-----e~~~I~pLV~LL~~~~~----~v~~eAa~AL~~la~--~~~~~~~~~~~~Iv~~g 579 (663)
++.+++.+||||+. .-.++ +.++||+||++|...++ +++++|+|+|.|++. .+ .+++...|++.|
T Consensus 303 v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~---~~~~~~~i~~~G 379 (458)
T 3nmz_A 303 TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT---NEDHRQILRENN 379 (458)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccC---CHHHHHHHHHcc
Confidence 99999999999998 32321 46899999999976654 599999999999985 12 257788899999
Q ss_pred CHHHHHHHHhcCChhHHHHHHHHHHHHhc-CCCChHHHHhccchhhhhhccccccccccCCcHHHHHHHHHHHHhh
Q 037612 580 GAKHLVQLVYFGEQIVQLSALVLLCYIAL-HVPDSEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLELY 654 (663)
Q Consensus 580 gi~~Lv~LL~~~~~~~q~~Al~~L~~la~-~~~~~~~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~le~~ 654 (663)
++++|++||++++..+|..|+++|+|++. +..+...|.++|+++.|..-.. . .++.++.-+..|+..|-.+
T Consensus 380 ~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~-s---~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 380 CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH-S---KHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTT-C---SSHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh-C---CCHHHHHHHHHHHHHHHcC
Confidence 99999999999998899999999999995 4455677999999999983221 1 2445666777777776543
No 11
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=8.5e-33 Score=323.59 Aligned_cols=312 Identities=16% Similarity=0.164 Sum_probs=263.4
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhcCCh-----------------------------hhH---HHHHhcCChHHHHH
Q 037612 149 WEQVAILYTAGSLEHKSDAAASLVSLARDND-----------------------------RYG---KLIIEEGGVGPLLK 196 (663)
Q Consensus 149 ~~li~~L~~~G~~e~k~~AA~~L~~La~~~~-----------------------------~~~---~~Ive~G~Ip~Lv~ 196 (663)
..||.+|++ ++...+..|+++|.||+.++| .++ +.|++.|+||+|+.
T Consensus 424 p~LV~LL~s-~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~ 502 (810)
T 3now_A 424 HALMDLARG-GNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCA 502 (810)
T ss_dssp HHHHHHHHT-TCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHhCC-CChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHH
Confidence 345888999 999999999999999998653 123 78899999999999
Q ss_pred hhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcC-ChhHHHHH---HhCC
Q 037612 197 LVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGN-YPKCQDLF---AQHN 272 (663)
Q Consensus 197 LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~-~~~~r~~i---~~~g 272 (663)
||+++++.+|+.|+|+|+||+.+++++..|+++|+||+|+.+|+++++.+|+.|+|||+||+.+ +++ ..+ ...|
T Consensus 503 LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~--~~~~~~~~~~ 580 (810)
T 3now_A 503 LAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPE--VSFSGQRSLD 580 (810)
T ss_dssp HHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHH--HHTTTHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChh--hhhcchhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999863 332 211 1136
Q ss_pred cHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHH
Q 037612 273 IIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVT 352 (663)
Q Consensus 273 ~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 352 (663)
+||||+.||.++.
T Consensus 581 aIppLv~LL~~~~------------------------------------------------------------------- 593 (810)
T 3now_A 581 VIRPLLNLLQQDC------------------------------------------------------------------- 593 (810)
T ss_dssp THHHHHHTTSTTS-------------------------------------------------------------------
T ss_pred HHHHHHHHhCCCC-------------------------------------------------------------------
Confidence 9999999996331
Q ss_pred hhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhc
Q 037612 353 NTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAK 432 (663)
Q Consensus 353 ~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~ 432 (663)
+ ...+..|++||.||+.
T Consensus 594 -----------------------------------------------------------~----~l~~~eAl~AL~NLa~ 610 (810)
T 3now_A 594 -----------------------------------------------------------T----ALENFESLMALTNLAS 610 (810)
T ss_dssp -----------------------------------------------------------C----HHHHHHHHHHHHHHTT
T ss_pred -----------------------------------------------------------c----HHHHHHHHHHHHHHhc
Confidence 0 0125568899999999
Q ss_pred CChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcch
Q 037612 433 GNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDL 512 (663)
Q Consensus 433 gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l 512 (663)
+++.++..|.+.|+++.|+.||.++++.+|..|+++|+||+... +.+.. |..+ .++++.|+.++++.+.++
T Consensus 611 ~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~----~~~~~-~v~~----~g~l~~Lv~LL~s~d~~v 681 (810)
T 3now_A 611 MNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE----DVIKM-FEGN----NDRVKFLALLCEDEDEET 681 (810)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH----HHHHH-HHSS----SSHHHHHHHGGGCSSHHH
T ss_pred CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh----HHHHH-HHhc----cCcHHHHHHHhcCCCHHH
Confidence 99999999999999999999999999999999999999997543 44443 3322 257889999999999999
Q ss_pred hhHHHHHHHHhhhc-hhh----Hh-hccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHH
Q 037612 513 LIPCIKAVGNLART-FKA----TE-TRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQ 586 (663)
Q Consensus 513 ~~~a~~aLg~La~~-~~~----~e-~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~ 586 (663)
+..++.||++|+.. ... .+ .++|||||+||++++++++++|+|||.|+++++ .++.++|+++||+++|+.
T Consensus 682 q~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s----~e~~~~l~e~G~i~~L~~ 757 (810)
T 3now_A 682 ATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAG----EEIAKKLFETDIMELLSG 757 (810)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTC----HHHHHHHHTSTHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCC----HHHHHHHHHCCCHHHHHH
Confidence 99999999999873 221 23 689999999999999999999999999998753 578899999999999999
Q ss_pred HHhcC---ChhHHHHHHHHHHHH
Q 037612 587 LVYFG---EQIVQLSALVLLCYI 606 (663)
Q Consensus 587 LL~~~---~~~~q~~Al~~L~~l 606 (663)
||+.+ ++.+...|+.+|.++
T Consensus 758 LL~~~d~~~~~i~e~Al~aL~~l 780 (810)
T 3now_A 758 LGQLPDDTRAKAREVATQCLAAA 780 (810)
T ss_dssp SCCCTTSTTHHHHHHHHHHHHHH
T ss_pred HHhCcccCcHHHHHHHHHHHHHH
Confidence 99866 455666699999777
No 12
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=5.1e-31 Score=295.64 Aligned_cols=404 Identities=17% Similarity=0.188 Sum_probs=314.0
Q ss_pred hHHHHHHHHhccCCCHHHHHHHHHHHHHhhcC-ChhhHHHHHhcCChHHHHHhhccC-ChHHHHHHHHHHHHhcCC-Ccc
Q 037612 146 CLIWEQVAILYTAGSLEHKSDAAASLVSLARD-NDRYGKLIIEEGGVGPLLKLVKEG-KPEGQENAARAIGLLGRD-PES 222 (663)
Q Consensus 146 ~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~-~~~~~~~Ive~G~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~~-~~~ 222 (663)
..+..++..|++ ++.+.+..|+.+|.++... ++.++..+++.|+||+|+++|+++ ++.+|+.|+|+|.+|+.+ +++
T Consensus 87 ~~i~~lv~~L~s-~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 87 QELPQMTQQLNS-DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp CCHHHHHHHHSC-SSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 345667889999 9999999999999998654 245678889999999999999997 799999999999999974 678
Q ss_pred hHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHH
Q 037612 223 VEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIH 302 (663)
Q Consensus 223 ~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~ 302 (663)
+..+++.|++|+|+++|+++++++++.|+|+|++|+.++++.+..+.+.|++++|+.+|.+... .-... ++.
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~v~~~-------a~~ 237 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKP-SLIRT-------ATW 237 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCH-HHHHH-------HHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCH-HHHHH-------HHH
Confidence 8899999999999999999999999999999999998888999999999999999999986421 10011 111
Q ss_pred HHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCC
Q 037612 303 AVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQ 382 (663)
Q Consensus 303 ~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~ 382 (663)
++........ +.. . .... ..++.
T Consensus 238 ~L~~L~~~~~------~~~------------------------~-~~~~--~~~l~------------------------ 260 (530)
T 1wa5_B 238 TLSNLCRGKK------PQP------------------------D-WSVV--SQALP------------------------ 260 (530)
T ss_dssp HHHHHHCCSS------SCC------------------------C-HHHH--GGGHH------------------------
T ss_pred HHHHHhCCCC------CCC------------------------c-HHHH--HhHHH------------------------
Confidence 1111111000 000 0 0000 00000
Q ss_pred CccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHH
Q 037612 383 DNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQ 462 (663)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq 462 (663)
.+...+ ..+|+ .++..|+++|++|+.+++.....+.+.|+++.|+.+|.+.+.+++
T Consensus 261 ----------~L~~lL----------~~~d~----~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~ 316 (530)
T 1wa5_B 261 ----------TLAKLI----------YSMDT----ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQ 316 (530)
T ss_dssp ----------HHHHHT----------TCCCH----HHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred ----------HHHHHH----------cCCCH----HHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhH
Confidence 011111 11344 468999999999999988888899999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhh-----HhhccHHH
Q 037612 463 YNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKA-----TETRMIVP 537 (663)
Q Consensus 463 ~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~-----~e~~~I~p 537 (663)
..|+++|++|+... ++..+..+. .++++.|+.++.+.++.++..++.+|++|+..... .+.+++|+
T Consensus 317 ~~a~~~L~~l~~~~---~~~~~~~~~------~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~ 387 (530)
T 1wa5_B 317 TPALRAVGNIVTGN---DLQTQVVIN------AGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP 387 (530)
T ss_dssp HHHHHHHHHHTTSC---HHHHHHHHH------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCC---HHHHHHHHH------cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH
Confidence 99999999997543 233332221 35889999999999899999999999999864322 24689999
Q ss_pred HHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCC-----
Q 037612 538 LVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPD----- 612 (663)
Q Consensus 538 LV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~----- 612 (663)
|+++|++.+++++++|+|||++++.+++. .+++...+++.|++++|+.+|..+++.++..++.+|.++....+.
T Consensus 388 L~~lL~~~~~~v~~~a~~aL~~l~~~~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~ 466 (530)
T 1wa5_B 388 LVKLLEVAEYKTKKEACWAISNASSGGLQ-RPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEAR 466 (530)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHTTT-CTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 99999999999999999999999876421 126788999999999999999999998999999999999754432
Q ss_pred -------hHHHHhccchhhhhhccccccccccCCcHHHHHHHHHHHHhhhh
Q 037612 613 -------SEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLELYQS 656 (663)
Q Consensus 613 -------~~~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~le~~~~ 656 (663)
...+.+.|++..|+ . ++.+....++.+|...++.|+.
T Consensus 467 ~~~~~~~~~~l~~~g~~~~L~------~-L~~~~~~~v~~~a~~il~~~~~ 510 (530)
T 1wa5_B 467 GLNINENADFIEKAGGMEKIF------N-CQQNENDKIYEKAYKIIETYFG 510 (530)
T ss_dssp TCSSCHHHHHHHHTTHHHHHH------G-GGGCSCHHHHHHHHHHHHHHSS
T ss_pred cccccHHHHHHHHcCcHHHHH------H-HHcCCCHHHHHHHHHHHHHHCC
Confidence 24477788888887 3 2455778899999999999886
No 13
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=6.3e-32 Score=299.88 Aligned_cols=481 Identities=16% Similarity=0.119 Sum_probs=320.0
Q ss_pred ccccHHHHHHHHHhhhc-----chHHHHhhccccCCCCccccCCCCcccchhhHhHHHHHHHHhccCC-CHHHHHHHHHH
Q 037612 97 PAAAFRKMSSQLENSIG-----DVSWLLRVSASAEDRDDEYLGLPPIAANEPILCLIWEQVAILYTAG-SLEHKSDAAAS 170 (663)
Q Consensus 97 ~~~~l~~l~~~L~~~~~-----~~~~ll~~s~~~~~~~~~~~~~p~ia~~~~i~~~v~~li~~L~~~G-~~e~k~~AA~~ 170 (663)
..+.++.++.+|..... .+..|.+++....++. .+.... ..+..++..|+. + +.+.+..|+.+
T Consensus 15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~-------~~~~~~---~~i~~Lv~~L~~-~~~~~~~~~a~~~ 83 (529)
T 1jdh_A 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH-------AIMRSP---QMVSAIVRTMQN-TNDVETARCTAGT 83 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHH-------HHHTCH---HHHHHHHHHHHH-CCCHHHHHHHHHH
T ss_pred hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHH-------HHHhCc---chHHHHHHHHhc-CCCHHHHHHHHHH
Confidence 56789999999864221 1444545554322110 000110 123345778887 7 88999999999
Q ss_pred HHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCC-CcchHHHHHcCchHHHHHhhccCChhHHHH
Q 037612 171 LVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRD-PESVEHMIHSGVCLVFAKILKEGPMKVQAV 249 (663)
Q Consensus 171 L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~-~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~ 249 (663)
|.+|+.+ +.++..|++.|+||+|+++|+++++.+|+.|+++|.||+.+ +.++..+++.|++|.|+++|++++++++..
T Consensus 84 L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~ 162 (529)
T 1jdh_A 84 LHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI 162 (529)
T ss_dssp HHHHTTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHH
T ss_pred HHHHHcC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHH
Confidence 9999876 66999999999999999999999999999999999999975 677888889999999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhh
Q 037612 250 VAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDK 329 (663)
Q Consensus 250 Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~ 329 (663)
++.+|.+|+..+++.+..+.+.|+++.|+.+|++++... ..+.. ...+...... +.+...+.
T Consensus 163 ~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~-~~~~a------~~~L~~l~~~-------~~~~~~~~---- 224 (529)
T 1jdh_A 163 TTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK-LLWTT------SRVLKVLSVC-------SSNKPAIV---- 224 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHH-HHHHH------HHHHHHHTTS-------TTHHHHHH----
T ss_pred HHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHH-HHHHH------HHHHHHHhcC-------cccHHHHH----
Confidence 999999999878899999999999999999998764211 11111 1111100000 00000000
Q ss_pred hcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCc
Q 037612 330 QYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRE 409 (663)
Q Consensus 330 ~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re 409 (663)
....+. ++-.-......++...+.+... ++...... ..+.. .+ ++ .+... ..
T Consensus 225 -~~g~~~-~L~~ll~~~~~~~~~~a~~~L~---------~l~~~~~~--~~~~~-~~-i~---~L~~l----------l~ 276 (529)
T 1jdh_A 225 -EAGGMQ-ALGLHLTDPSQRLVQNCLWTLR---------NLSDAATK--QEGME-GL-LG---TLVQL----------LG 276 (529)
T ss_dssp -HTTHHH-HHHTTTTSSCHHHHHHHHHHHH---------HHHTTCTT--CSCCH-HH-HH---HHHHH----------TT
T ss_pred -HCCCHH-HHHHHHhCCChHHHHHHHHHHH---------HHhcCChh--hHHHH-hH-HH---HHHHH----------Hc
Confidence 000000 0000000011233334443331 01000000 00000 00 00 01111 12
Q ss_pred cCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcC--ChhHHHHHHHHHHHHhhhhhccHHHHhhhc
Q 037612 410 LEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKG--PEDVQYNSAMALMEITAVAEKDAELRRSAF 487 (663)
Q Consensus 410 ~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~--~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~ 487 (663)
.+|++ ++..|+++|++|+.++..++..+.+.|+++.|+.+|.+. ++++++.++++|++|+....++...|+...
T Consensus 277 ~~~~~----v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~ 352 (529)
T 1jdh_A 277 SDDIN----VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVR 352 (529)
T ss_dssp CSCHH----HHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHH
T ss_pred CCCHH----HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 24554 588999999999999999999999999999999999863 379999999999999765433333444322
Q ss_pred CCCCchhHhHHHHHHHHhhhcCc-chhhHHHHHHHHhhhchhhH----hhccHHHHHHhcccCCHHHHHHHHHHHHh--c
Q 037612 488 KPNAPACKAVVDQLFRIIEKADS-DLLIPCIKAVGNLARTFKAT----ETRMIVPLVKLLDEREAEVSREASIALTK--F 560 (663)
Q Consensus 488 ~~~~~a~~~vv~qL~~ll~~~~~-~l~~~a~~aLg~La~~~~~~----e~~~I~pLV~LL~~~~~~v~~eAa~AL~~--l 560 (663)
. .++++.|++++.+.++ .++..++.+|++++...... +.++||+|+++|++.+++++++|+|+++| +
T Consensus 353 ~------~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~ 426 (529)
T 1jdh_A 353 L------HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 426 (529)
T ss_dssp H------TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------C
T ss_pred H------cCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhh
Confidence 1 3468999999998874 89999999999999764443 35789999999999999999999999888 3
Q ss_pred ccCCCC---------------CChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCChHHHHhccchhhh
Q 037612 561 ACSDNY---------------LHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVL 625 (663)
Q Consensus 561 a~~~~~---------------~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~~~~i~~~~vl~~L 625 (663)
..+++. .++++...|.+.|++++|+.++.++++.++..|+.+|++++.+.+....+.+.|+++.|
T Consensus 427 ~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L 506 (529)
T 1jdh_A 427 VEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPL 506 (529)
T ss_dssp BTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHH
T ss_pred hccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHH
Confidence 322110 02355567999999999999999999989999999999998665556778899999999
Q ss_pred hhccccccccccCCcHHHHHHHHHHHH
Q 037612 626 EWTSKQSHMTQDETVDPLLQDAKSRLE 652 (663)
Q Consensus 626 ~~~~~~~~~~q~~~~~~l~~~a~~~le 652 (663)
+ .. +++...+++..|...|+
T Consensus 507 ~------~l-~~~~~~~v~~~a~~aL~ 526 (529)
T 1jdh_A 507 T------EL-LHSRNEGVATYAAAVLF 526 (529)
T ss_dssp H------HG-GGCSSHHHHHHHHHHHH
T ss_pred H------HH-hcCCCHHHHHHHHHHHH
Confidence 8 22 23355666666665554
No 14
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=3.8e-31 Score=297.93 Aligned_cols=360 Identities=19% Similarity=0.252 Sum_probs=287.3
Q ss_pred eecccccHHHHHHHHHhhhc-----chHH-HHhhccccCCCCccccCCCCcccchhhHhHHHHHHHHhccCCCHHHHHHH
Q 037612 94 TIIPAAAFRKMSSQLENSIG-----DVSW-LLRVSASAEDRDDEYLGLPPIAANEPILCLIWEQVAILYTAGSLEHKSDA 167 (663)
Q Consensus 94 ~i~~~~~l~~l~~~L~~~~~-----~~~~-ll~~s~~~~~~~~~~~~~p~ia~~~~i~~~v~~li~~L~~~G~~e~k~~A 167 (663)
.|+..|.+|+|+..|..... ...| |-+++........ .+...+.+.. |+.+|++ ++.+.|+.|
T Consensus 114 ~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~------~vv~~Gaip~----Lv~LL~s-~~~~v~e~A 182 (529)
T 3tpo_A 114 NIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK------AVVDGGAIPA----FISLLAS-PHAHISEQA 182 (529)
T ss_dssp HHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH------HHHHTTHHHH----HHHHTTC-SCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH------HHHHCCCHHH----HHHHHcC-CCHHHHHHH
Confidence 34588999999999964321 1334 4455543211100 0112222222 3789999 999999999
Q ss_pred HHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCC-----hHHHHHHHHHHHHhcCCCcc-hHHHHHcCchHHHHHhhcc
Q 037612 168 AASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGK-----PEGQENAARAIGLLGRDPES-VEHMIHSGVCLVFAKILKE 241 (663)
Q Consensus 168 A~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~-----~~~q~~Aa~AL~nLs~~~~~-~~~iv~aGaIp~Lv~lL~s 241 (663)
+++|++|+.+++.+|..|++.|++++|+.+|...+ ...+++++|+|.|++.+... .......|++|.|+++|.+
T Consensus 183 ~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~ 262 (529)
T 3tpo_A 183 VWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHH 262 (529)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcC
Confidence 99999999998999999999999999999998654 34688999999999986544 3444557899999999999
Q ss_pred CChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCC
Q 037612 242 GPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNN 321 (663)
Q Consensus 242 ~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~ 321 (663)
++++++..++|+|++|+.++++....+.+.|++|.||.+|.++.
T Consensus 263 ~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~------------------------------------ 306 (529)
T 3tpo_A 263 NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE------------------------------------ 306 (529)
T ss_dssp SCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSC------------------------------------
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCC------------------------------------
Confidence 99999999999999999888888899999999999999996431
Q ss_pred ccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcccccccccccccccccc
Q 037612 322 KVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNY 401 (663)
Q Consensus 322 ~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 401 (663)
T Consensus 307 -------------------------------------------------------------------------------- 306 (529)
T 3tpo_A 307 -------------------------------------------------------------------------------- 306 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHH
Q 037612 402 GANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAE 481 (663)
Q Consensus 402 g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~ 481 (663)
..++..|+++|++++.+++.++..+.+.|++++|+.||+++++++|++|+|+|++|+++.. +
T Consensus 307 ---------------~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~---~ 368 (529)
T 3tpo_A 307 ---------------LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ---D 368 (529)
T ss_dssp ---------------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCH---H
T ss_pred ---------------hhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccH---H
Confidence 1246778999999999999999999999999999999999999999999999999987644 3
Q ss_pred HHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchh------hHhhccHHHHHHhcccCCHHHHHHHHH
Q 037612 482 LRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFK------ATETRMIVPLVKLLDEREAEVSREASI 555 (663)
Q Consensus 482 ~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~------~~e~~~I~pLV~LL~~~~~~v~~eAa~ 555 (663)
.+...+ ..++++.|+.++.+++.+++..|+.+|+|++.... -.+.|+|+||++||+..++++...+.+
T Consensus 369 ~~~~v~------~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~ 442 (529)
T 3tpo_A 369 QIQQVV------NHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILD 442 (529)
T ss_dssp HHHHHH------HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHHHHH------hcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHH
Confidence 333211 14688999999999999999999999999986422 135789999999999999999999999
Q ss_pred HHHhcccCCCCC-Chhh-HHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHH
Q 037612 556 ALTKFACSDNYL-HSDH-SKAIISAGGAKHLVQLVYFGEQIVQLSALVLLC 604 (663)
Q Consensus 556 AL~~la~~~~~~-~~~~-~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~ 604 (663)
||.|+..-+... +.+. +..|.+.||+..|-.|..+.++.+...|...|-
T Consensus 443 aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie 493 (529)
T 3tpo_A 443 AISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 493 (529)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999986321111 1222 345889999999999999888878888888884
No 15
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=3.1e-31 Score=301.14 Aligned_cols=303 Identities=16% Similarity=0.153 Sum_probs=248.0
Q ss_pred HhcCChHHHHHhhccCChHHHHHHHHHHHHhcC-CCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcC-Chh
Q 037612 186 IEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR-DPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGN-YPK 263 (663)
Q Consensus 186 ve~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~-~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~-~~~ 263 (663)
.+.+.||+||++|+++++..|++|+++|.+|+. +++++..|++.|+||+||++|+++++++|+.|+|+|.||+.+ +++
T Consensus 45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence 357899999999999999999999999999995 789999999999999999999999999999999999999974 589
Q ss_pred HHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCC
Q 037612 264 CQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKT 343 (663)
Q Consensus 264 ~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~ 343 (663)
++..|++.|+||+||.+|+++.
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~---------------------------------------------------------- 146 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKAR---------------------------------------------------------- 146 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCC----------------------------------------------------------
T ss_pred HHHHHHHcCCHHHHHHHHcCCC----------------------------------------------------------
Confidence 9999999999999999997531
Q ss_pred CccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHH
Q 037612 344 PSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMA 423 (663)
Q Consensus 344 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~A 423 (663)
+ ..+++.|
T Consensus 147 --------------------------------------------------------------------~----~~~~e~a 154 (584)
T 3l6x_A 147 --------------------------------------------------------------------D----MDLTEVI 154 (584)
T ss_dssp --------------------------------------------------------------------S----HHHHHHH
T ss_pred --------------------------------------------------------------------C----HHHHHHH
Confidence 0 1247789
Q ss_pred HHHHHHHhcCChhhhHHHhhhccHHHHHHHhh------------------cCChhHHHHHHHHHHHHhhhhhccHHHHhh
Q 037612 424 ARALWHLAKGNSPICRSITESRALLCFAVLLE------------------KGPEDVQYNSAMALMEITAVAEKDAELRRS 485 (663)
Q Consensus 424 a~AL~~La~gn~~~~~~I~esgal~~L~~LL~------------------~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~ 485 (663)
+.|||+|+. ++.+...|.+ +++++|++||. ..+++++++|+++|.|++...+ +.|+.
T Consensus 155 a~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~---~~R~~ 229 (584)
T 3l6x_A 155 TGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERS---EARRK 229 (584)
T ss_dssp HHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCH---HHHHH
T ss_pred HHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCH---HHHHH
Confidence 999999997 7889888885 68999999882 2257999999999999986433 34443
Q ss_pred hcCCCCchhHhHHHHHHHHhhh------cCcchhhHHHHHHHHhhhchhh------------------------------
Q 037612 486 AFKPNAPACKAVVDQLFRIIEK------ADSDLLIPCIKAVGNLARTFKA------------------------------ 529 (663)
Q Consensus 486 a~~~~~~a~~~vv~qL~~ll~~------~~~~l~~~a~~aLg~La~~~~~------------------------------ 529 (663)
+.. +.++++.|+.++++ .+...+..|+.+|.||+.....
T Consensus 230 i~~-----~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L 304 (584)
T 3l6x_A 230 LRE-----CDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELL 304 (584)
T ss_dssp HHH-----STTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGG
T ss_pred HHH-----cCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHH
Confidence 211 25678899999986 3467889999999999865210
Q ss_pred HhhccHHHHHHhcc-cCCHHHHHHHHHHHHhcccCCCCCChhh-HHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 037612 530 TETRMIVPLVKLLD-EREAEVSREASIALTKFACSDNYLHSDH-SKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIA 607 (663)
Q Consensus 530 ~e~~~I~pLV~LL~-~~~~~v~~eAa~AL~~la~~~~~~~~~~-~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la 607 (663)
.+.++|++|+.+|. ..++++++.|++||.|++.+... .... ...|.+.||+++|+.||.++++.++..|+++|.||+
T Consensus 305 ~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~-~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs 383 (584)
T 3l6x_A 305 FQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWT-YGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLA 383 (584)
T ss_dssp GSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSH-HHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcc-ccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 01245889999995 56899999999999999765421 1122 234566899999999999999989999999999999
Q ss_pred cCCCChHHHHhccchhhhhhccc
Q 037612 608 LHVPDSEDLAQAEVLTVLEWTSK 630 (663)
Q Consensus 608 ~~~~~~~~i~~~~vl~~L~~~~~ 630 (663)
.+..+...| ..|++|.|..-..
T Consensus 384 ~~~~~~~~I-~~g~ip~LV~LL~ 405 (584)
T 3l6x_A 384 VDARNKELI-GKHAIPNLVKNLP 405 (584)
T ss_dssp TTCSCHHHH-HHHHHHHHHHTSS
T ss_pred CChhHHHHH-HhCCHHHHHHHhc
Confidence 988877766 6789999985333
No 16
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.98 E-value=4.3e-31 Score=296.46 Aligned_cols=381 Identities=19% Similarity=0.226 Sum_probs=295.6
Q ss_pred HHHHHHHHHHHHhhhcCcccccceecccccHHHHHHHHHhhh-cc----hHH-HHhhccccC-CCC--ccccCCCCcccc
Q 037612 71 QVLEKALSLVIKYRANGIIKRVFTIIPAAAFRKMSSQLENSI-GD----VSW-LLRVSASAE-DRD--DEYLGLPPIAAN 141 (663)
Q Consensus 71 ~tl~~a~~l~~~C~~~~~~~r~~~i~~~~~l~~l~~~L~~~~-~~----~~~-ll~~s~~~~-~~~--~~~~~~p~ia~~ 141 (663)
+..-+|..-+|++-.....--.=.|+..|.+|+|+.+|.... .+ ..| |-|++.... +.. ...+++|+
T Consensus 72 ~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~---- 147 (510)
T 3ul1_B 72 ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPA---- 147 (510)
T ss_dssp HHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHH----
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHH----
Confidence 334456666776632111111113568899999999996432 11 333 445543221 111 11222333
Q ss_pred hhhHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCC-----hHHHHHHHHHHHHh
Q 037612 142 EPILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGK-----PEGQENAARAIGLL 216 (663)
Q Consensus 142 ~~i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~-----~~~q~~Aa~AL~nL 216 (663)
|+.+|++ ++.+.|++|+++|++|+.+++.+|..+++.|++++|+.+|.+.+ ...+++++|+|.|+
T Consensus 148 ---------Lv~lL~s-~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 148 ---------FISLLAS-PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp ---------HHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred ---------HHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 3889999 99999999999999999998999999999999999999998754 34688999999999
Q ss_pred cCCCcch-HHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHh
Q 037612 217 GRDPESV-EHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIV 295 (663)
Q Consensus 217 s~~~~~~-~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~ 295 (663)
+.+.... ......|++|.|+++|.+++++++..++|+|++|+.++++....+.+.|++|.|+.+|.++.
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~---------- 287 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE---------- 287 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSC----------
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCC----------
Confidence 9865443 34445789999999999999999999999999999888888889999999999999996431
Q ss_pred hhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCc
Q 037612 296 SKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGT 375 (663)
Q Consensus 296 ~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~ 375 (663)
T Consensus 288 -------------------------------------------------------------------------------- 287 (510)
T 3ul1_B 288 -------------------------------------------------------------------------------- 287 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhh
Q 037612 376 DVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLE 455 (663)
Q Consensus 376 ~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~ 455 (663)
..++..|+++|++++.+++.++..+.+.|++++|+.||+
T Consensus 288 -----------------------------------------~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~ 326 (510)
T 3ul1_B 288 -----------------------------------------LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 326 (510)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTT
T ss_pred -----------------------------------------hhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhc
Confidence 124677899999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhh------
Q 037612 456 KGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKA------ 529 (663)
Q Consensus 456 ~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~------ 529 (663)
++++++|++|+|+|++|+++.. +.++..+ ..++++.|++++.+++.+++..|+.+|+|++.....
T Consensus 327 ~~~~~v~~~A~~aL~nl~a~~~---~~~~~v~------~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L 397 (510)
T 3ul1_B 327 NPKTNIQKEATWTMSNITAGRQ---DQIQQVV------NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYL 397 (510)
T ss_dssp CSSHHHHHHHHHHHHHHTTSCH---HHHHHHH------HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCcH---HHHHHHH------hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 9999999999999999986643 3333221 146889999999999999999999999999874322
Q ss_pred HhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCC-Chh-hHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHH
Q 037612 530 TETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYL-HSD-HSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCY 605 (663)
Q Consensus 530 ~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~-~~~-~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ 605 (663)
.+.++|+||+++|+..++++...+.++|.|+...+... +.+ -+..|.+.||++.|-.|..+.++.+...|...|-.
T Consensus 398 ~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~ 475 (510)
T 3ul1_B 398 VHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 475 (510)
T ss_dssp HHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999999999986321111 112 23458899999999999888888788888888843
No 17
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.98 E-value=3.4e-30 Score=279.76 Aligned_cols=401 Identities=17% Similarity=0.192 Sum_probs=307.4
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhhc-CChhhHHHHHhc-CChHHHHHhhccC-ChHHHHHHHHHHHHhcC-CCcch
Q 037612 148 IWEQVAILYTAGSLEHKSDAAASLVSLAR-DNDRYGKLIIEE-GGVGPLLKLVKEG-KPEGQENAARAIGLLGR-DPESV 223 (663)
Q Consensus 148 v~~li~~L~~~G~~e~k~~AA~~L~~La~-~~~~~~~~Ive~-G~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~-~~~~~ 223 (663)
+..++..|++ ++.+.|..|+..|..+.. ..+...+.+++. |++|.|+++|+++ ++..|..|+++|.+++. ++++.
T Consensus 22 l~~l~~~l~s-~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 22 TSDMIEMIFS-KSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp CHHHHHHHHS-SCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 3445888899 999999999999999764 222334556777 9999999999998 79999999999999997 46788
Q ss_pred HHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHH
Q 037612 224 EHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHA 303 (663)
Q Consensus 224 ~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~ 303 (663)
..+++.|++|.|+++|+++++++++.|+|+|++|+.++++.+..+.+.|++++|+.+|.+.....-... ++.+
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~-------a~~~ 173 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRN-------AVWA 173 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHH-------HHHH
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHH-------HHHH
Confidence 889999999999999999999999999999999999888999999999999999999985321111111 1111
Q ss_pred HHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCC
Q 037612 304 VVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQD 383 (663)
Q Consensus 304 lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~ 383 (663)
+........ +.. . ...+ .++.
T Consensus 174 L~~l~~~~~------~~~-------------------~------~~~~---------------------------~~~l- 194 (450)
T 2jdq_A 174 LSNLCRGKS------PPP-------------------E------FAKV---------------------------SPCL- 194 (450)
T ss_dssp HHHHHCCSS------SCC-------------------C------GGGT---------------------------GGGH-
T ss_pred HHHHhCCCC------CCC-------------------C------HHHH---------------------------HHHH-
Confidence 111111000 000 0 0000 0000
Q ss_pred ccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHH
Q 037612 384 NNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQY 463 (663)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~ 463 (663)
+ .+...+. .+|+ .++..|+++|.+|+.+...+...+.+.|+++.|+.+|.+.+++++.
T Consensus 195 ~--------~L~~~l~----------~~~~----~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~ 252 (450)
T 2jdq_A 195 N--------VLSWLLF----------VSDT----DVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVS 252 (450)
T ss_dssp H--------HHHHHTT----------CCCH----HHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHH
T ss_pred H--------HHHHHHc----------cCCH----HHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHH
Confidence 0 0111111 1344 4588999999999998888888899999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhh-----HhhccHHHH
Q 037612 464 NSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKA-----TETRMIVPL 538 (663)
Q Consensus 464 ~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~-----~e~~~I~pL 538 (663)
.++++|.+|+... ++.++..+. .++++.|++++.+.++.++..++.+|++|+..... .+.+++|+|
T Consensus 253 ~a~~~L~~l~~~~---~~~~~~~~~------~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 323 (450)
T 2jdq_A 253 PALRAVGNIVTGD---DIQTQVILN------CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323 (450)
T ss_dssp HHHHHHHHHTTSC---HHHHHHHHT------TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHhhCC---hHHHHHHHH------CccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence 9999999997543 333332222 25889999999998899999999999999964322 235899999
Q ss_pred HHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCC------
Q 037612 539 VKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPD------ 612 (663)
Q Consensus 539 V~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~------ 612 (663)
+++|.+.+++++++|+|+|++++.+.+ +++.+.+++.|++++|+++|..+++.++..|+.+|.+++...+.
T Consensus 324 ~~~l~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~ 400 (450)
T 2jdq_A 324 ISILQTAEFRTRKEAAWAITNATSGGS---AEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNG 400 (450)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHcCCC---HHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccc
Confidence 999999999999999999999986542 57788899999999999999999988999999999999754432
Q ss_pred ------hHHHHhccchhhhhhccccccccccCCcHHHHHHHHHHHHhhhh
Q 037612 613 ------SEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLELYQS 656 (663)
Q Consensus 613 ------~~~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~le~~~~ 656 (663)
...+.+.|+++.|+ . ++++....++..|...++.|+.
T Consensus 401 ~~~~~~~~~l~~~g~~~~l~------~-l~~~~~~~v~~~a~~~l~~~~~ 443 (450)
T 2jdq_A 401 TGINPYCALIEEAYGLDKIE------F-LQSHENQEIYQKAFDLIEHYFG 443 (450)
T ss_dssp SCCCHHHHHHHHHHCHHHHH------H-HHCHHHHHHHHHHHHHHHHHHC
T ss_pred cchhHHHHHHHHcCcHHHHH------H-HHcCCCHHHHHHHHHHHHHHCC
Confidence 24566777777776 2 3445677899999999999986
No 18
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.97 E-value=5.5e-30 Score=284.30 Aligned_cols=331 Identities=15% Similarity=0.155 Sum_probs=283.5
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhc-CChHHHHHhhccC-ChHHHHHHHHHHHHhcCCCcchHHH
Q 037612 149 WEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEE-GGVGPLLKLVKEG-KPEGQENAARAIGLLGRDPESVEHM 226 (663)
Q Consensus 149 ~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~-G~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~~~~~~~~i 226 (663)
-.++.+|+. ++.+.|..|+..|.+|+.+ +.++..+++. |+|++|+++|+++ ++..++.|+.+|.+|+.+++++..+
T Consensus 20 ~~Lv~lL~~-~~~~v~~~A~~~L~~l~~~-~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 97 (529)
T 1jdh_A 20 PELTKLLND-EDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HHHHHHHTC-SCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHHHcC-CccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHH
Confidence 334788999 9999999999999999976 5677777754 8999999999876 7899999999999999998999999
Q ss_pred HHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHH
Q 037612 227 IHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVV 306 (663)
Q Consensus 227 v~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~ 306 (663)
++.|+||+|+++|++++++++..|+++|.+|+.++++.+..+.+.|+||+|+.+|++++
T Consensus 98 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~--------------------- 156 (529)
T 1jdh_A 98 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN--------------------- 156 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCC---------------------
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCC---------------------
Confidence 99999999999999999999999999999999877788999999999999999996431
Q ss_pred hhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccc
Q 037612 307 ASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNV 386 (663)
Q Consensus 307 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~ 386 (663)
T Consensus 157 -------------------------------------------------------------------------------- 156 (529)
T 1jdh_A 157 -------------------------------------------------------------------------------- 156 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCCh-hHHHHH
Q 037612 387 KQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPE-DVQYNS 465 (663)
Q Consensus 387 ~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~-~vq~~a 465 (663)
.+.+..++.+|++++.+++.++..+.+.|+++.|+.+|++++. ..+..+
T Consensus 157 ------------------------------~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a 206 (529)
T 1jdh_A 157 ------------------------------VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT 206 (529)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHH
Confidence 0135667889999999999999999999999999999998765 566778
Q ss_pred HHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHh--hccHHHHHHhcc
Q 037612 466 AMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATE--TRMIVPLVKLLD 543 (663)
Q Consensus 466 a~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e--~~~I~pLV~LL~ 543 (663)
+.+|++++...+....+.+ .++++.|++++.+.+++++..++.+|++|++.....+ .++||+|+++|.
T Consensus 207 ~~~L~~l~~~~~~~~~~~~----------~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~ 276 (529)
T 1jdh_A 207 SRVLKVLSVCSSNKPAIVE----------AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG 276 (529)
T ss_dssp HHHHHHHTTSTTHHHHHHH----------TTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTT
T ss_pred HHHHHHHhcCcccHHHHHH----------CCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHc
Confidence 8999999854432222222 3588999999999889999999999999998754432 468999999999
Q ss_pred cCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcC-C-hhHHHHHHHHHHHHhcCCCCh----HHHH
Q 037612 544 EREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFG-E-QIVQLSALVLLCYIALHVPDS----EDLA 617 (663)
Q Consensus 544 ~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~-~-~~~q~~Al~~L~~la~~~~~~----~~i~ 617 (663)
+.+++++..|+|+|++++.++ .++...+.+.||+++|+++|... + +.++..|+.+|+|++.+.++. ..+.
T Consensus 277 ~~~~~v~~~a~~~L~~L~~~~----~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~ 352 (529)
T 1jdh_A 277 SDDINVVTCAAGILSNLTCNN----YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVR 352 (529)
T ss_dssp CSCHHHHHHHHHHHHHHTTTC----HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCC----HHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 999999999999999998653 57788999999999999999863 2 568899999999998876663 4788
Q ss_pred hccchhhhh
Q 037612 618 QAEVLTVLE 626 (663)
Q Consensus 618 ~~~vl~~L~ 626 (663)
+.|+++.|.
T Consensus 353 ~~~~i~~L~ 361 (529)
T 1jdh_A 353 LHYGLPVVV 361 (529)
T ss_dssp HTTCHHHHH
T ss_pred HcCChhHHH
Confidence 899999987
No 19
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.97 E-value=2.5e-29 Score=289.30 Aligned_cols=463 Identities=16% Similarity=0.119 Sum_probs=309.2
Q ss_pred ccccHHHHHHHHHhhhc-----chHHHHhhccccCCCCccccCCCCcccchhhHhHHHHHHHHhccCC-CHHHHHHHHHH
Q 037612 97 PAAAFRKMSSQLENSIG-----DVSWLLRVSASAEDRDDEYLGLPPIAANEPILCLIWEQVAILYTAG-SLEHKSDAAAS 170 (663)
Q Consensus 97 ~~~~l~~l~~~L~~~~~-----~~~~ll~~s~~~~~~~~~~~~~p~ia~~~~i~~~v~~li~~L~~~G-~~e~k~~AA~~ 170 (663)
..+.++.|+.+|..... .+..|.+++....++. .+.... ..+..++..|+. + +.+.+..|+.+
T Consensus 12 ~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~-------~i~~~~---~~i~~Lv~~L~~-~~~~~~~~~A~~~ 80 (644)
T 2z6h_A 12 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH-------AIMRSP---QMVSAIVRTMQN-TNDVETARCTAGT 80 (644)
T ss_dssp CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHH-------HHTTCH---HHHHHHHHHHHS-CCCHHHHHHHHHH
T ss_pred hhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHH-------HHHhcc---ChHHHHHHHHhc-CCCHHHHHHHHHH
Confidence 67889999999964221 2445555554322110 011111 123445788887 7 89999999999
Q ss_pred HHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCC-CcchHHHHHcCchHHHHHhhccCChhHHHH
Q 037612 171 LVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRD-PESVEHMIHSGVCLVFAKILKEGPMKVQAV 249 (663)
Q Consensus 171 L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~-~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~ 249 (663)
|.+|+.. +.++..|++.|+||+|+++|+++++.+|+.|+++|.||+.+ +..+..+++.|+||.|+++|++++++++..
T Consensus 81 L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~ 159 (644)
T 2z6h_A 81 LHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI 159 (644)
T ss_dssp HHHHTTS-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHH
T ss_pred HHHHhcC-hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHH
Confidence 9999986 56999999999999999999999999999999999999965 677888889999999999999999888888
Q ss_pred HHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhh
Q 037612 250 VAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDK 329 (663)
Q Consensus 250 Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~ 329 (663)
++.+|.+|+..+++.+..+.+.|+|+.|+.+|++++. +...+. ....+...... +.+...+...+
T Consensus 160 a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~-~~~~~~------a~~~L~nLs~~-------~~~~~~l~~~g- 224 (644)
T 2z6h_A 160 TTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY-EKLLWT------TSRVLKVLSVC-------SSNKPAIVEAG- 224 (644)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCC-HHHHHH------HHHHHHHHTTC-------TTHHHHHHHTT-
T ss_pred HHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCCh-HHHHHH------HHHHHHHHhcC-------cccHHHHHHCC-
Confidence 8999999997778999999999999999999987742 111111 11111111000 00000000000
Q ss_pred hcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCc
Q 037612 330 QYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRE 409 (663)
Q Consensus 330 ~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re 409 (663)
.. +.+..-+.. ....+...+++... ++...... ..+....+. .+.. ...
T Consensus 225 ~l-~~L~~ll~~----~~~~~~~~a~~~L~---------nL~~~~~~--~~~~~~~i~-----~Lv~----------lL~ 273 (644)
T 2z6h_A 225 GM-QALGLHLTD----PSQRLVQNCLWTLR---------NLSDAATK--QEGMEGLLG-----TLVQ----------LLG 273 (644)
T ss_dssp HH-HHHHTTTTC----SCHHHHHHHHHHHH---------HHGGGCTT--CCSCHHHHH-----HHHH----------HTT
T ss_pred CH-HHHHHHHhc----CCHHHHHHHHHHHH---------HHhhcchh--hhhhhhHHH-----HHHH----------HHc
Confidence 00 000000000 11223333333321 01000000 000000000 0110 111
Q ss_pred cCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcC-C-hhHHHHHHHHHHHHhhhhhccHHHHhhhc
Q 037612 410 LEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKG-P-EDVQYNSAMALMEITAVAEKDAELRRSAF 487 (663)
Q Consensus 410 ~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~-~-~~vq~~aa~AL~~i~a~a~~~~~~rr~a~ 487 (663)
.+|+ +++..|+++|++|+.++..++..+.+.|+++.|+.+|.+. + ++++..|+++|.+|+.....+...|...+
T Consensus 274 ~~d~----~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~ 349 (644)
T 2z6h_A 274 SDDI----NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVR 349 (644)
T ss_dssp CSCH----HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHH
T ss_pred CCCH----HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 2354 4589999999999999999999999999999999999873 3 79999999999999754332222332211
Q ss_pred CCCCchhHhHHHHHHHHhhhcC-cchhhHHHHHHHHhhhchhhH----hhccHHHHHHhcccCCHHHHHHHHHHHHh--c
Q 037612 488 KPNAPACKAVVDQLFRIIEKAD-SDLLIPCIKAVGNLARTFKAT----ETRMIVPLVKLLDEREAEVSREASIALTK--F 560 (663)
Q Consensus 488 ~~~~~a~~~vv~qL~~ll~~~~-~~l~~~a~~aLg~La~~~~~~----e~~~I~pLV~LL~~~~~~v~~eAa~AL~~--l 560 (663)
. .++++.|++++.+.+ +.++..++.+|+||+...... +.++||+|+++|.+.+++++++|+|+++| +
T Consensus 350 ~------~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~ 423 (644)
T 2z6h_A 350 L------HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 423 (644)
T ss_dssp H------TTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------
T ss_pred H------ccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchh
Confidence 1 347899999999876 589999999999999764442 46899999999988777777666666655 3
Q ss_pred ccCCCC---------------CChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCChHHHHhccchhhh
Q 037612 561 ACSDNY---------------LHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVL 625 (663)
Q Consensus 561 a~~~~~---------------~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~~~~i~~~~vl~~L 625 (663)
+.+.+. .+.++...+.+.|++++|++||.++++.+|..|+.+|++++.+.+....|.+.|+++.|
T Consensus 424 ~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L 503 (644)
T 2z6h_A 424 VEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPL 503 (644)
T ss_dssp CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHH
T ss_pred cccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHH
Confidence 322110 01244457889999999999999999989999999999998765567778999999998
Q ss_pred hh
Q 037612 626 EW 627 (663)
Q Consensus 626 ~~ 627 (663)
..
T Consensus 504 ~~ 505 (644)
T 2z6h_A 504 TE 505 (644)
T ss_dssp HH
T ss_pred HH
Confidence 73
No 20
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.97 E-value=1.7e-28 Score=289.18 Aligned_cols=479 Identities=15% Similarity=0.115 Sum_probs=320.4
Q ss_pred ccccHHHHHHHHHhhhc-----chHHHHhhccccCCCCccccCCCCcccchhhHhHHHHHHHHhccCC-CHHHHHHHHHH
Q 037612 97 PAAAFRKMSSQLENSIG-----DVSWLLRVSASAEDRDDEYLGLPPIAANEPILCLIWEQVAILYTAG-SLEHKSDAAAS 170 (663)
Q Consensus 97 ~~~~l~~l~~~L~~~~~-----~~~~ll~~s~~~~~~~~~~~~~p~ia~~~~i~~~v~~li~~L~~~G-~~e~k~~AA~~ 170 (663)
..+.++.|+.+|..... .+..|.+++....++. .+.... ..+..++..|+. + +.+.|.+|+.+
T Consensus 148 ~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~-------~i~~~~---~~i~~Lv~~L~~-~~d~~vr~~Aa~a 216 (780)
T 2z6g_A 148 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH-------AIMRSP---QMVSAIVRTMQN-TNDVETARCTSGT 216 (780)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHH-------HHTTCH---HHHHHHHHHHHH-CCCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHH-------HHHhcc---ChHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 47899999999964221 2455555554332110 011111 123445778887 7 89999999999
Q ss_pred HHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCC-CcchHHHHHcCchHHHHHhhccCChhHHHH
Q 037612 171 LVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRD-PESVEHMIHSGVCLVFAKILKEGPMKVQAV 249 (663)
Q Consensus 171 L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~-~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~ 249 (663)
|.+|+.. +.++..|++.|+||+|+++|+++++.+|+.|+++|.||+.+ +.++..+++.|+||.|+++|++++.+++..
T Consensus 217 L~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~ 295 (780)
T 2z6g_A 217 LHNLSHH-REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI 295 (780)
T ss_dssp HHHHHTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHH
T ss_pred HHHHhCC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHH
Confidence 9999876 67799999999999999999999999999999999999975 677778889999999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhh
Q 037612 250 VAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDK 329 (663)
Q Consensus 250 Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~ 329 (663)
++.+|.+|+..+++.+..+.+.|+++.|+.+|+.++.......+. ..+..+. .. . .+...+.
T Consensus 296 a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~----~aL~~Ls---~~-~------~~~~~i~---- 357 (780)
T 2z6g_A 296 TTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTS----RVLKVLS---VC-S------SNKPAIV---- 357 (780)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHH----HHHHHHH---TS-T------THHHHHH----
T ss_pred HHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHH----HHHHHhh---cC-h------HHHHHHH----
Confidence 999999999878899999999999999999999775311110000 0111110 00 0 0000000
Q ss_pred hcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCc
Q 037612 330 QYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRE 409 (663)
Q Consensus 330 ~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re 409 (663)
....+. ++..-.......++..+.+... ++...... ..+.. .+. + .+... ..
T Consensus 358 -~~g~l~-~Ll~lL~~~~~~~~~~a~~~L~---------~L~~~~~~--~~~~~-~~i-~---~Lv~l----------L~ 409 (780)
T 2z6g_A 358 -EAGGMQ-ALGLHLTDPSQRLVQNCLWTLR---------NLSDAATK--QEGME-GLL-G---TLVQL----------LG 409 (780)
T ss_dssp -HTTHHH-HHGGGTTCSCHHHHHHHHHHHH---------HHHTTCTT--CSCCH-HHH-H---HHHHH----------TT
T ss_pred -HhchHH-HHHHHHcCCchHHHHHHHHHHH---------HHhccchh--hhhhh-hHH-H---HHHHH----------Hc
Confidence 000000 0000000011223333333221 01000000 00000 000 0 01111 11
Q ss_pred cCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhc-CC-hhHHHHHHHHHHHHhhhhhccHHHHhhhc
Q 037612 410 LEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEK-GP-EDVQYNSAMALMEITAVAEKDAELRRSAF 487 (663)
Q Consensus 410 ~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~-~~-~~vq~~aa~AL~~i~a~a~~~~~~rr~a~ 487 (663)
.+|+. ++..|+++|++|+.++..++..+.+.|+++.|+.+|.. ++ ++++..|+++|.+|+....++...|....
T Consensus 410 ~~d~~----vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~ 485 (780)
T 2z6g_A 410 SDDIN----VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVR 485 (780)
T ss_dssp CSCHH----HHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHH
T ss_pred CCCHH----HHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 24554 58999999999999999999999999999999999986 33 49999999999999754332222232211
Q ss_pred CCCCchhHhHHHHHHHHhhhcCc-chhhHHHHHHHHhhhchhhH----hhccHHHHHHhcccCCHHHHHHHHHHH-----
Q 037612 488 KPNAPACKAVVDQLFRIIEKADS-DLLIPCIKAVGNLARTFKAT----ETRMIVPLVKLLDEREAEVSREASIAL----- 557 (663)
Q Consensus 488 ~~~~~a~~~vv~qL~~ll~~~~~-~l~~~a~~aLg~La~~~~~~----e~~~I~pLV~LL~~~~~~v~~eAa~AL----- 557 (663)
..++++.|++++.+.++ .++..|+.+|+||+...... +.++||+|+++|.+.+++++++|+|++
T Consensus 486 ------~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~ 559 (780)
T 2z6g_A 486 ------LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 559 (780)
T ss_dssp ------HTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CC
T ss_pred ------HcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchh
Confidence 13468899999998875 89999999999999765543 468899999999887766665555554
Q ss_pred -----------------HhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCChHHHHhcc
Q 037612 558 -----------------TKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSEDLAQAE 620 (663)
Q Consensus 558 -----------------~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~~~~i~~~~ 620 (663)
.+++.+ +++...|.+.|++++|+.||+++++.++..|+.+|++++.+.+..+.|.+.|
T Consensus 560 ~~~~~~~~v~~~a~~aL~~La~~-----~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g 634 (780)
T 2z6g_A 560 VEGVRMEEIVEACTGALHILARD-----IHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEG 634 (780)
T ss_dssp STTCCHHHHHHHHHHHHHHHTTS-----HHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTT
T ss_pred hcccChHHHHHHHHHHHHHHhcC-----hhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCC
Confidence 455422 3455678899999999999999999899999999999987766677899999
Q ss_pred chhhhhhccccccccccCCcHHHHHHHHHHHH
Q 037612 621 VLTVLEWTSKQSHMTQDETVDPLLQDAKSRLE 652 (663)
Q Consensus 621 vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~le 652 (663)
+++.|...... .++.++..+..|+.++.
T Consensus 635 ~i~~L~~Ll~~----~~~~Vr~~A~~aL~~l~ 662 (780)
T 2z6g_A 635 ATAPLTELLHS----RNEGVATYAAAVLFRMS 662 (780)
T ss_dssp CHHHHHHGGGC----SCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcC----CCHHHHHHHHHHHHHHH
Confidence 99999732211 23344444455554443
No 21
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.97 E-value=1.3e-28 Score=283.41 Aligned_cols=330 Identities=15% Similarity=0.158 Sum_probs=283.3
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhc-CChHHHHHhhccC-ChHHHHHHHHHHHHhcCCCcchHHHHH
Q 037612 151 QVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEE-GGVGPLLKLVKEG-KPEGQENAARAIGLLGRDPESVEHMIH 228 (663)
Q Consensus 151 li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~-G~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~~~~~~~~iv~ 228 (663)
++.+|+. ++...|..|+.+|.+|+.++ .++..+++. |+|++|+++|+++ ++..|+.|+.+|.+|+.+++++..+++
T Consensus 19 Lv~lL~~-~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~ 96 (644)
T 2z6h_A 19 LTKLLND-EDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFK 96 (644)
T ss_dssp HHHHHTC-SCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHT
T ss_pred HHHHHcC-CCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHH
Confidence 4788999 99999999999999999874 578777754 8999999999976 789999999999999999899999999
Q ss_pred cCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhh
Q 037612 229 SGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVAS 308 (663)
Q Consensus 229 aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~ 308 (663)
.|+||.|+++|+++++.++..|+++|.||+..+++.+..+.+.|+||+|+.+|++++
T Consensus 97 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~----------------------- 153 (644)
T 2z6h_A 97 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN----------------------- 153 (644)
T ss_dssp TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC-----------------------
T ss_pred cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCC-----------------------
Confidence 999999999999999999999999999999877788899999999999999996431
Q ss_pred cccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccc
Q 037612 309 NKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQ 388 (663)
Q Consensus 309 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~ 388 (663)
T Consensus 154 -------------------------------------------------------------------------------- 153 (644)
T 2z6h_A 154 -------------------------------------------------------------------------------- 153 (644)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCC-hhHHHHHHH
Q 037612 389 NHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGP-EDVQYNSAM 467 (663)
Q Consensus 389 ~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~-~~vq~~aa~ 467 (663)
.+++..++.+|++|+.+++.++..+.+.|+++.|+.+|++.+ ..++..++.
T Consensus 154 ----------------------------~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~ 205 (644)
T 2z6h_A 154 ----------------------------VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSR 205 (644)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred ----------------------------HHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHH
Confidence 023566788999999999999999999999999999999875 578899999
Q ss_pred HHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHh--hccHHHHHHhcccC
Q 037612 468 ALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATE--TRMIVPLVKLLDER 545 (663)
Q Consensus 468 AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e--~~~I~pLV~LL~~~ 545 (663)
+|++++...+....+.+ .++++.|++++.+.++.++..++.+|++|++.....+ .++||+|+++|.+.
T Consensus 206 ~L~nLs~~~~~~~~l~~----------~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~ 275 (644)
T 2z6h_A 206 VLKVLSVCSSNKPAIVE----------AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSD 275 (644)
T ss_dssp HHHHHTTCTTHHHHHHH----------TTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCS
T ss_pred HHHHHhcCcccHHHHHH----------CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCC
Confidence 99999854432222222 3578999999999889999999999999998654322 46899999999999
Q ss_pred CHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcC-C-hhHHHHHHHHHHHHhcCCCCh----HHHHhc
Q 037612 546 EAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFG-E-QIVQLSALVLLCYIALHVPDS----EDLAQA 619 (663)
Q Consensus 546 ~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~-~-~~~q~~Al~~L~~la~~~~~~----~~i~~~ 619 (663)
+++++..|+|+|++++.+. .++...+.+.||++.|+++|... + +.++..|+.+|+|++.+.++. ..+...
T Consensus 276 d~~v~~~a~~aL~~L~~~~----~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~ 351 (644)
T 2z6h_A 276 DINVVTCAAGILSNLTCNN----YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLH 351 (644)
T ss_dssp CHHHHHHHHHHHHHHHTTC----HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHcCC----HHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHc
Confidence 9999999999999998653 46788899999999999999874 3 568999999999998776653 347778
Q ss_pred cchhhhhh
Q 037612 620 EVLTVLEW 627 (663)
Q Consensus 620 ~vl~~L~~ 627 (663)
++++.|..
T Consensus 352 ~~l~~L~~ 359 (644)
T 2z6h_A 352 YGLPVVVK 359 (644)
T ss_dssp THHHHHHH
T ss_pred cChHHHHH
Confidence 99999873
No 22
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.97 E-value=3.3e-28 Score=272.18 Aligned_cols=362 Identities=16% Similarity=0.180 Sum_probs=290.7
Q ss_pred ecccccHHHHHHHHHhhh-cc-----hHHHHhhccccCCCCccccCCCCcccchhhHhHHHHHHHHhccCCCHHHHHHHH
Q 037612 95 IIPAAAFRKMSSQLENSI-GD-----VSWLLRVSASAEDRDDEYLGLPPIAANEPILCLIWEQVAILYTAGSLEHKSDAA 168 (663)
Q Consensus 95 i~~~~~l~~l~~~L~~~~-~~-----~~~ll~~s~~~~~~~~~~~~~p~ia~~~~i~~~v~~li~~L~~~G~~e~k~~AA 168 (663)
++..+.++.|+..|.... .+ +..|-+++........ .+...+. +-.++..|+. ++.+.|..|+
T Consensus 113 ~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~------~~~~~g~----i~~L~~lL~~-~~~~v~~~a~ 181 (528)
T 4b8j_A 113 VIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK------VVIDHGA----VPIFVKLLGS-SSDDVREQAV 181 (528)
T ss_dssp HHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH------HHHHTTH----HHHHHHHTTC-SCHHHHHHHH
T ss_pred HHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH------HHHhCCc----HHHHHHHhcC-CCHHHHHHHH
Confidence 346799999999996543 21 2333344432110000 0011122 2334788999 9999999999
Q ss_pred HHHHHhhcCChhhHHHHHhcCChHHHHHhh-ccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHH
Q 037612 169 ASLVSLARDNDRYGKLIIEEGGVGPLLKLV-KEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQ 247 (663)
Q Consensus 169 ~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL-~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq 247 (663)
++|++|+.+++.++..+.+.|+||+|+.+| .+.++..++.|+|+|.+|+.+.......+..|++|.|+++|.+++++++
T Consensus 182 ~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~ 261 (528)
T 4b8j_A 182 WALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVL 261 (528)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHH
Confidence 999999998888999999999999999999 4567999999999999999876666667779999999999999999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccch
Q 037612 248 AVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDE 327 (663)
Q Consensus 248 ~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~ 327 (663)
..++|+|++|+...++....+.+.|++|.|+.+|.++.
T Consensus 262 ~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~------------------------------------------ 299 (528)
T 4b8j_A 262 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS------------------------------------------ 299 (528)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSC------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCC------------------------------------------
Confidence 99999999999877777788889999999999996431
Q ss_pred hhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCC
Q 037612 328 DKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKG 407 (663)
Q Consensus 328 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~ 407 (663)
T Consensus 300 -------------------------------------------------------------------------------- 299 (528)
T 4b8j_A 300 -------------------------------------------------------------------------------- 299 (528)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcC-ChhHHHHHHHHHHHHhhhhhccHHHHhhh
Q 037612 408 RELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKG-PEDVQYNSAMALMEITAVAEKDAELRRSA 486 (663)
Q Consensus 408 re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~-~~~vq~~aa~AL~~i~a~a~~~~~~rr~a 486 (663)
..++..|+++|++|+.+++..+..+.+.|+++.|+.+|.++ ++.++++|+|+|++|+.+ +.+..+..
T Consensus 300 ---------~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~---~~~~~~~~ 367 (528)
T 4b8j_A 300 ---------PSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG---NKDQIQAV 367 (528)
T ss_dssp ---------HHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS---CHHHHHHH
T ss_pred ---------hhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 02467789999999999999999999999999999999999 999999999999999864 33333322
Q ss_pred cCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhch--hh----HhhccHHHHHHhcccCCHHHHHHHHHHHHhc
Q 037612 487 FKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTF--KA----TETRMIVPLVKLLDEREAEVSREASIALTKF 560 (663)
Q Consensus 487 ~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~--~~----~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~l 560 (663)
+. .++++.|++++.+++++++..++.+|++++... .. .+.++|++|+.+|.+.+++++..|.++|.++
T Consensus 368 ~~------~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l 441 (528)
T 4b8j_A 368 IN------AGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENI 441 (528)
T ss_dssp HH------TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HH------CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 21 357899999999999999999999999998762 11 2468999999999999999999999999999
Q ss_pred ccCCCC-------CChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 037612 561 ACSDNY-------LHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIA 607 (663)
Q Consensus 561 a~~~~~-------~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la 607 (663)
...+.. ........|.+.||+..|..|.+++++.++..|..+|..+.
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~ 495 (528)
T 4b8j_A 442 LKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 495 (528)
T ss_dssp HHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 743210 00124667899999999999999998888888999887773
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.96 E-value=8.9e-28 Score=269.28 Aligned_cols=363 Identities=18% Similarity=0.212 Sum_probs=291.3
Q ss_pred cccccHHHHHHHHHhh-hcc-----hHHHHhhccccCCCCccccCCCCcccchhhHhHHHHHHHHhccCCCHHHHHHHHH
Q 037612 96 IPAAAFRKMSSQLENS-IGD-----VSWLLRVSASAEDRDDEYLGLPPIAANEPILCLIWEQVAILYTAGSLEHKSDAAA 169 (663)
Q Consensus 96 ~~~~~l~~l~~~L~~~-~~~-----~~~ll~~s~~~~~~~~~~~~~p~ia~~~~i~~~v~~li~~L~~~G~~e~k~~AA~ 169 (663)
+..+.++.++..|... ..+ +..|-+++........ .+...+. +..++..|+. ++.+.|..|++
T Consensus 127 ~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~------~~~~~g~----i~~Lv~lL~~-~~~~vr~~A~~ 195 (530)
T 1wa5_B 127 IQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK------VVVDADA----VPLFIQLLYT-GSVEVKEQAIW 195 (530)
T ss_dssp HHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH------HHHHTTC----HHHHHHHHHH-CCHHHHHHHHH
T ss_pred HHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH------HHHHCCC----HHHHHHHHcC-CCHHHHHHHHH
Confidence 4678999999999654 221 2233333332110000 0001111 2334778899 99999999999
Q ss_pred HHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCC-cchHHHHHcCchHHHHHhhccCChhHHH
Q 037612 170 SLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDP-ESVEHMIHSGVCLVFAKILKEGPMKVQA 248 (663)
Q Consensus 170 ~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~-~~~~~iv~aGaIp~Lv~lL~s~~~~vq~ 248 (663)
+|++|+.+++.++..+++.|++|+|+.+|.+.++.++..|+|+|.+|+.+. .........|++|.|+++|.++++.++.
T Consensus 196 aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~ 275 (530)
T 1wa5_B 196 ALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 275 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHH
T ss_pred HHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHH
Confidence 999999988889999999999999999999988999999999999999765 6666777899999999999999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchh
Q 037612 249 VVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDED 328 (663)
Q Consensus 249 ~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~ 328 (663)
.++|+|.+|+...++....+.+.|++|.|+.+|.++.
T Consensus 276 ~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~------------------------------------------- 312 (530)
T 1wa5_B 276 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES------------------------------------------- 312 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSC-------------------------------------------
T ss_pred HHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCC-------------------------------------------
Confidence 9999999999877788888889999999999986321
Q ss_pred hhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCC
Q 037612 329 KQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGR 408 (663)
Q Consensus 329 ~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~r 408 (663)
T Consensus 313 -------------------------------------------------------------------------------- 312 (530)
T 1wa5_B 313 -------------------------------------------------------------------------------- 312 (530)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcC
Q 037612 409 ELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFK 488 (663)
Q Consensus 409 e~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~ 488 (663)
+ .++..|+++|++|+.+++.....+.+.|+++.|+.+|.+++..++..|+|+|++|+.+. ++..+..+.
T Consensus 313 ----~----~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~---~~~~~~~~~ 381 (530)
T 1wa5_B 313 ----T----LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN---TEQIQAVID 381 (530)
T ss_dssp ----H----HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC---HHHHHHHHH
T ss_pred ----h----hhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC---HHHHHHHHH
Confidence 0 24667889999999999999999999999999999999999999999999999998643 343333221
Q ss_pred CCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhh--------HhhccHHHHHHhcccCCHHHHHHHHHHHHhc
Q 037612 489 PNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKA--------TETRMIVPLVKLLDEREAEVSREASIALTKF 560 (663)
Q Consensus 489 ~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~--------~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~l 560 (663)
.++++.|+.++.+++++++..++.+|++++..... .+.++||+|+.+|.+.+++++..|.++|.++
T Consensus 382 ------~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l 455 (530)
T 1wa5_B 382 ------ANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENI 455 (530)
T ss_dssp ------TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999875321 2468999999999999999999999999999
Q ss_pred ccCCCC-------CChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcC
Q 037612 561 ACSDNY-------LHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALH 609 (663)
Q Consensus 561 a~~~~~-------~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~ 609 (663)
+..... .....+..|.+.||++.|..|+.++++.++..|..+|.++-..
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 456 LKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp HHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred HHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 743210 0113456799999999999999999998999999999887543
No 24
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=3.4e-29 Score=269.50 Aligned_cols=232 Identities=13% Similarity=0.144 Sum_probs=198.1
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHHHHHhc-CChHHHHHhhccCChHHHHHHHHHHHHhcCC--CcchHHHHHcCchHHHH
Q 037612 160 SLEHKSDAAASLVSLARDNDRYGKLIIEE-GGVGPLLKLVKEGKPEGQENAARAIGLLGRD--PESVEHMIHSGVCLVFA 236 (663)
Q Consensus 160 ~~e~k~~AA~~L~~La~~~~~~~~~Ive~-G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~--~~~~~~iv~aGaIp~Lv 236 (663)
+.+.|.+|+++|.+|+..++.++..|.+. |+||+||++|+++++.+|+.|+|+|.||+.. ++++..|+++|+||+||
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 46789999999999999888788888655 4599999999999999999999999999974 57899999999999999
Q ss_pred Hhh-ccCChhHHHHHHHHHHHHhcCChhHHHHHH-hCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCcc
Q 037612 237 KIL-KEGPMKVQAVVAWAVSELAGNYPKCQDLFA-QHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNA 314 (663)
Q Consensus 237 ~lL-~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~-~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~ 314 (663)
++| +++++++++.|+++|.||+..+++.+..+. ..|+||+||.+|++++..
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~--------------------------- 229 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQT--------------------------- 229 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSS---------------------------
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCc---------------------------
Confidence 975 678899999999999999986677787777 799999999999754200
Q ss_pred ccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccc
Q 037612 315 NANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQH 394 (663)
Q Consensus 315 ~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~ 394 (663)
T Consensus 230 -------------------------------------------------------------------------------- 229 (354)
T 3nmw_A 230 -------------------------------------------------------------------------------- 229 (354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhc---CChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHH
Q 037612 395 QHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAK---GNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALME 471 (663)
Q Consensus 395 ~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~---gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~ 471 (663)
.+ .+++..|+.+|++|+. +++.+...+.+.|++++|+.+|++++.++|++|+|||++
T Consensus 230 ----------------~~----~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~n 289 (354)
T 3nmw_A 230 ----------------NT----LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWN 289 (354)
T ss_dssp ----------------SC----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ----------------cc----HHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 00 0247789999999997 899999999999999999999999999999999999999
Q ss_pred HhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHH
Q 037612 472 ITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSR 551 (663)
Q Consensus 472 i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~ 551 (663)
|+.. +++.++. ++ +.|+||||++||+++++.+++
T Consensus 290 La~~---~~~~~~~------------------i~-------------------------~~G~i~~Lv~LL~s~~~~i~~ 323 (354)
T 3nmw_A 290 LSAR---NPKDQEA------------------LW-------------------------DMGAVSMLKNLIHSKHKMIAM 323 (354)
T ss_dssp HTSS---CHHHHHH------------------HH-------------------------HTTHHHHHHTTTTCSSHHHHH
T ss_pred HhCC---CHHHHHH------------------HH-------------------------HCCCHHHHHHHHhCCCHHHHH
Confidence 9743 2333321 11 358999999999999999999
Q ss_pred HHHHHHHhcccCC
Q 037612 552 EASIALTKFACSD 564 (663)
Q Consensus 552 eAa~AL~~la~~~ 564 (663)
+|++||.|++.+.
T Consensus 324 ~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 324 GSAAALRNLMANR 336 (354)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999998653
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.96 E-value=1.6e-27 Score=258.66 Aligned_cols=317 Identities=19% Similarity=0.148 Sum_probs=267.1
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhcc-CChHHHHHHHHHHHHhcCC--CcchHH
Q 037612 149 WEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKE-GKPEGQENAARAIGLLGRD--PESVEH 225 (663)
Q Consensus 149 ~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~s-g~~~~q~~Aa~AL~nLs~~--~~~~~~ 225 (663)
..++..|+. ++.+.|..|+++|++++.+++.++..+++.|++|+|+++|++ .+...++.|+++|++|+.+ +..+..
T Consensus 110 ~~L~~lL~~-~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 188 (450)
T 2jdq_A 110 PIFIELLSS-EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFA 188 (450)
T ss_dssp HHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGG
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 345788999 999999999999999999888899999999999999999996 5799999999999999965 344444
Q ss_pred HHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHH
Q 037612 226 MIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVV 305 (663)
Q Consensus 226 iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv 305 (663)
++ .|++|.|+++|+++++.++..++|+|.+|+.+.++.+..+.+.|++|+|+.+|.++.
T Consensus 189 ~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-------------------- 247 (450)
T 2jdq_A 189 KV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHND-------------------- 247 (450)
T ss_dssp GT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSC--------------------
T ss_pred HH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCc--------------------
Confidence 44 899999999999999999999999999999877788888889999999999885321
Q ss_pred HhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcc
Q 037612 306 VASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNN 385 (663)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~ 385 (663)
T Consensus 248 -------------------------------------------------------------------------------- 247 (450)
T 2jdq_A 248 -------------------------------------------------------------------------------- 247 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHH
Q 037612 386 VKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNS 465 (663)
Q Consensus 386 ~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~a 465 (663)
+ .++..|+++|++++.+++..+..+.+.|+++.|+.+|+++++.++..|
T Consensus 248 ---------------------------~----~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a 296 (450)
T 2jdq_A 248 ---------------------------Y----KVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEA 296 (450)
T ss_dssp ---------------------------H----HHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHH
T ss_pred ---------------------------h----hHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHH
Confidence 1 246778899999999999888889999999999999999999999999
Q ss_pred HHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchh--h----HhhccHHHHH
Q 037612 466 AMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFK--A----TETRMIVPLV 539 (663)
Q Consensus 466 a~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~--~----~e~~~I~pLV 539 (663)
+|+|++|+.+. ++..+..+. .++++.|++++.+++++++..++.+|++++.... . .+.+++|+|+
T Consensus 297 ~~~L~~l~~~~---~~~~~~~~~------~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~ 367 (450)
T 2jdq_A 297 CWTISNITAGN---RAQIQTVID------ANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLC 367 (450)
T ss_dssp HHHHHHHTTSC---HHHHHHHHH------TTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHcCC---HHHHHHHHH------CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHH
Confidence 99999998643 333332221 3578999999999999999999999999987521 1 2458999999
Q ss_pred HhcccCCHHHHHHHHHHHHhcccCCCC-------CChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 037612 540 KLLDEREAEVSREASIALTKFACSDNY-------LHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIA 607 (663)
Q Consensus 540 ~LL~~~~~~v~~eAa~AL~~la~~~~~-------~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la 607 (663)
++|++.++++++.|++||.+++..+.. .-......+.+.||++.|..|+++++..++..|+.+|.++-
T Consensus 368 ~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 368 DLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999843210 00123567889999999999999888878888999998874
No 26
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.96 E-value=1.3e-27 Score=281.52 Aligned_cols=333 Identities=15% Similarity=0.153 Sum_probs=284.1
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhc-CChHHHHHhhccC-ChHHHHHHHHHHHHhcCCCcchHH
Q 037612 148 IWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEE-GGVGPLLKLVKEG-KPEGQENAARAIGLLGRDPESVEH 225 (663)
Q Consensus 148 v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~-G~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~~~~~~~~ 225 (663)
+-.++..|+. ++...|.+|+.+|++|+.. +.++..+++. |+|++|+++|+++ ++..+++|+++|.+|+.+++++..
T Consensus 152 ip~Lv~lL~~-~d~~vr~~A~~~L~~L~~~-~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~ 229 (780)
T 2z6g_A 152 IPELTKLLND-EDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLA 229 (780)
T ss_dssp HHHHHHHHHC-SCHHHHHHHHHHHHHHHTS-HHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHCC-CCHHHHHHHHHHHHHHhCC-ChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHH
Confidence 3445778888 9999999999999999976 5677888754 8999999999876 799999999999999999999999
Q ss_pred HHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHH
Q 037612 226 MIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVV 305 (663)
Q Consensus 226 iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv 305 (663)
|++.|+||.|+++|+++++.++..|+++|.||+...++.+..+.+.|+|++|+.+|.++.
T Consensus 230 i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~-------------------- 289 (780)
T 2z6g_A 230 IFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-------------------- 289 (780)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC--------------------
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCC--------------------
Confidence 999999999999999999999999999999999877889999999999999999996431
Q ss_pred HhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcc
Q 037612 306 VASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNN 385 (663)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~ 385 (663)
T Consensus 290 -------------------------------------------------------------------------------- 289 (780)
T 2z6g_A 290 -------------------------------------------------------------------------------- 289 (780)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCCh-hHHHH
Q 037612 386 VKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPE-DVQYN 464 (663)
Q Consensus 386 ~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~-~vq~~ 464 (663)
.+++..|+.+|++|+.++..++..+.+.|+++.|+.+|++++. ..+..
T Consensus 290 -------------------------------~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~ 338 (780)
T 2z6g_A 290 -------------------------------VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT 338 (780)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHH
T ss_pred -------------------------------HHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHH
Confidence 0135567789999999999999999999999999999998765 56678
Q ss_pred HHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhH--hhccHHHHHHhc
Q 037612 465 SAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKAT--ETRMIVPLVKLL 542 (663)
Q Consensus 465 aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~--e~~~I~pLV~LL 542 (663)
++.+|++++...+....+.+ .++++.|+.++.+.++.++..|+.+|.+|+...... ..++||+|+++|
T Consensus 339 a~~aL~~Ls~~~~~~~~i~~----------~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL 408 (780)
T 2z6g_A 339 TSRVLKVLSVCSSNKPAIVE----------AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL 408 (780)
T ss_dssp HHHHHHHHHTSTTHHHHHHH----------TTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHT
T ss_pred HHHHHHHhhcChHHHHHHHH----------hchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHH
Confidence 89999999865433233222 468899999999988889999999999999765432 246899999999
Q ss_pred ccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhc-CC-hhHHHHHHHHHHHHhcCCCCh----HHH
Q 037612 543 DEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYF-GE-QIVQLSALVLLCYIALHVPDS----EDL 616 (663)
Q Consensus 543 ~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~-~~-~~~q~~Al~~L~~la~~~~~~----~~i 616 (663)
.+.+++++..|+++|++++.+. .++...+++.||+++|+++|.. ++ +.++..|+.+|++|+.+.++. ..+
T Consensus 409 ~~~d~~vr~~A~~aL~~L~~~~----~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v 484 (780)
T 2z6g_A 409 GSDDINVVTCAAGILSNLTCNN----YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAV 484 (780)
T ss_dssp TCSCHHHHHHHHHHHHHHTSSC----HHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhCC----HHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 9999999999999999998653 4678889999999999999986 33 258899999999998766663 467
Q ss_pred Hhccchhhhhh
Q 037612 617 AQAEVLTVLEW 627 (663)
Q Consensus 617 ~~~~vl~~L~~ 627 (663)
..+++++.|..
T Consensus 485 ~~~~~l~~L~~ 495 (780)
T 2z6g_A 485 RLHYGLPVVVK 495 (780)
T ss_dssp HHTTCHHHHHH
T ss_pred HHcCCHHHHHH
Confidence 88899999874
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=9.5e-26 Score=225.28 Aligned_cols=243 Identities=27% Similarity=0.314 Sum_probs=215.0
Q ss_pred CChHHHHHhhccCChHHHHHHHHHHHHhcCCC-cchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHH
Q 037612 189 GGVGPLLKLVKEGKPEGQENAARAIGLLGRDP-ESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDL 267 (663)
Q Consensus 189 G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~-~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~ 267 (663)
|+||.|+++|+++++..|..|+++|.+|+.+. +++..+++.|+++.|+++|++++++++..++++|.+|+.++++.+..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 67999999999999999999999999999755 59999999999999999999999999999999999999877999999
Q ss_pred HHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccc
Q 037612 268 FAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQM 347 (663)
Q Consensus 268 i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~ 347 (663)
+.+.|++++|+.+|++++
T Consensus 82 ~~~~~~i~~l~~ll~~~~-------------------------------------------------------------- 99 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTD-------------------------------------------------------------- 99 (252)
T ss_dssp HHHTTHHHHHHHHTTCSS--------------------------------------------------------------
T ss_pred HHHCCCHHHHHHHHcCCC--------------------------------------------------------------
Confidence 999999999999996431
Q ss_pred hhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHH
Q 037612 348 HNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARAL 427 (663)
Q Consensus 348 ~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL 427 (663)
+ .++..|+++|
T Consensus 100 -----------------------------------------------------------------~----~v~~~a~~~L 110 (252)
T 4hxt_A 100 -----------------------------------------------------------------S----EVQKEAARAL 110 (252)
T ss_dssp -----------------------------------------------------------------H----HHHHHHHHHH
T ss_pred -----------------------------------------------------------------H----HHHHHHHHHH
Confidence 1 2477899999
Q ss_pred HHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhh
Q 037612 428 WHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEK 507 (663)
Q Consensus 428 ~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~ 507 (663)
++|+.+++.++..+.+.|+++.|+.+|++++++++..++++|++|+...+ +.++ .++
T Consensus 111 ~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~---~~~~------------------~~~-- 167 (252)
T 4hxt_A 111 ANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD---EAIK------------------AIV-- 167 (252)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH---HHHH------------------HHH--
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH---HHHH------------------HHH--
Confidence 99999999999999999999999999999999999999999999975432 2211 011
Q ss_pred cCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHH
Q 037612 508 ADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQL 587 (663)
Q Consensus 508 ~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~L 587 (663)
+.+++|+|+++|++.+++++..|+++|.+++... +++...+.+.|+++.|+++
T Consensus 168 -----------------------~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~----~~~~~~l~~~~~i~~L~~l 220 (252)
T 4hxt_A 168 -----------------------DAGGVEVLVKLLTSTDSEVQKEAARALANIASGP----TSAIKAIVDAGGVEVLQKL 220 (252)
T ss_dssp -----------------------HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB----HHHHHHHHHTTHHHHHHHG
T ss_pred -----------------------HCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC----HHHHHHHHHCCCHHHHHHH
Confidence 2478999999999999999999999999998642 5777889999999999999
Q ss_pred HhcCChhHHHHHHHHHHHHhcCCCC
Q 037612 588 VYFGEQIVQLSALVLLCYIALHVPD 612 (663)
Q Consensus 588 L~~~~~~~q~~Al~~L~~la~~~~~ 612 (663)
+.++++.+|..|+++|++++.+.+.
T Consensus 221 l~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 221 LTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred HCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 9999998999999999999876654
No 28
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=1.7e-25 Score=223.44 Aligned_cols=238 Identities=26% Similarity=0.321 Sum_probs=212.0
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCC-CcchHHHH
Q 037612 149 WEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRD-PESVEHMI 227 (663)
Q Consensus 149 ~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~-~~~~~~iv 227 (663)
..++..|+. ++.+.|..|+++|.+++..++.++..+++.|+||+|+++|+++++..++.|+++|.||+.+ ++++..++
T Consensus 5 ~~L~~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 5 EKLVKLLTS-TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHTTC-SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 445889999 9999999999999999998888999999999999999999999999999999999999986 88999999
Q ss_pred HcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHh
Q 037612 228 HSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVA 307 (663)
Q Consensus 228 ~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~ 307 (663)
+.|+++.|+++|++++++++..++++|.+|+..+++.+..+.+.|+++.|+.+|++++
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~---------------------- 141 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD---------------------- 141 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC----------------------
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC----------------------
Confidence 9999999999999999999999999999999778899999999999999999996431
Q ss_pred hcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcccc
Q 037612 308 SNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVK 387 (663)
Q Consensus 308 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~ 387 (663)
T Consensus 142 -------------------------------------------------------------------------------- 141 (252)
T 4hxt_A 142 -------------------------------------------------------------------------------- 141 (252)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHH
Q 037612 388 QNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAM 467 (663)
Q Consensus 388 ~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~ 467 (663)
+ .++..|+++|++|+.+++.+...+.+.|+++.|+.+|++++++++..+++
T Consensus 142 -------------------------~----~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 192 (252)
T 4hxt_A 142 -------------------------S----EVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 192 (252)
T ss_dssp -------------------------H----HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred -------------------------H----HHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHH
Confidence 1 24777899999999999999899999999999999999999999999999
Q ss_pred HHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCH
Q 037612 468 ALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREA 547 (663)
Q Consensus 468 AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~ 547 (663)
+|++|+.. +++.++. ++ +.+++++|+++|++.++
T Consensus 193 ~L~~l~~~---~~~~~~~------------------l~-------------------------~~~~i~~L~~ll~~~~~ 226 (252)
T 4hxt_A 193 ALANIASG---PTSAIKA------------------IV-------------------------DAGGVEVLQKLLTSTDS 226 (252)
T ss_dssp HHHHHTTS---BHHHHHH------------------HH-------------------------HTTHHHHHHHGGGCSCH
T ss_pred HHHHHHcC---CHHHHHH------------------HH-------------------------HCCCHHHHHHHHCCCcH
Confidence 99999753 2232221 11 24789999999999999
Q ss_pred HHHHHHHHHHHhcccCC
Q 037612 548 EVSREASIALTKFACSD 564 (663)
Q Consensus 548 ~v~~eAa~AL~~la~~~ 564 (663)
+++++|+++|.|++...
T Consensus 227 ~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 227 EVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 99999999999998554
No 29
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=1e-25 Score=226.83 Aligned_cols=236 Identities=18% Similarity=0.247 Sum_probs=205.6
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC-CCcchHHHH
Q 037612 149 WEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR-DPESVEHMI 227 (663)
Q Consensus 149 ~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~-~~~~~~~iv 227 (663)
.+++..|++ ++.+.+..|+++|.++...++.+++.+++.|+||+|+++|+++++..++.|+++|.||+. +++++..++
T Consensus 15 ~~~~~~L~s-~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (252)
T 4db8_A 15 PQMTQQLNS-DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (252)
T ss_dssp HHHHHHHHS-SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 345889999 999999999999988666567889999999999999999999999999999999999996 789999999
Q ss_pred HcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHh
Q 037612 228 HSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVA 307 (663)
Q Consensus 228 ~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~ 307 (663)
+.|++|.|+++|++++++++..|+|+|+||+.+++.....+.+.|+||.|+.+|+++.
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~---------------------- 151 (252)
T 4db8_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN---------------------- 151 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSC----------------------
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCC----------------------
Confidence 9999999999999999999999999999999865444488999999999999996431
Q ss_pred hcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcccc
Q 037612 308 SNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVK 387 (663)
Q Consensus 308 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~ 387 (663)
T Consensus 152 -------------------------------------------------------------------------------- 151 (252)
T 4db8_A 152 -------------------------------------------------------------------------------- 151 (252)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHH
Q 037612 388 QNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAM 467 (663)
Q Consensus 388 ~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~ 467 (663)
+ .++..|+++|++|+.+++.+...+.+.|+++.|+.+|++++++++.++++
T Consensus 152 -------------------------~----~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 202 (252)
T 4db8_A 152 -------------------------E----QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 202 (252)
T ss_dssp -------------------------H----HHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHH
T ss_pred -------------------------H----HHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHH
Confidence 1 24778899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCH
Q 037612 468 ALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREA 547 (663)
Q Consensus 468 AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~ 547 (663)
+|.+|+.. +++.++. ++ +.+++++|+++|.+.++
T Consensus 203 ~L~~l~~~---~~~~~~~------------------~~-------------------------~~g~i~~L~~ll~~~~~ 236 (252)
T 4db8_A 203 ALSNIASG---GNEQKQA------------------VK-------------------------EAGALEKLEQLQSHENE 236 (252)
T ss_dssp HHHHHTTS---CHHHHHH------------------HH-------------------------HTTHHHHHHTTTTCSSS
T ss_pred HHHHHhcC---CHHHHHH------------------HH-------------------------HCCcHHHHHHHhCCCCH
Confidence 99999743 2232220 11 24789999999999999
Q ss_pred HHHHHHHHHHHhccc
Q 037612 548 EVSREASIALTKFAC 562 (663)
Q Consensus 548 ~v~~eAa~AL~~la~ 562 (663)
+++++|+++|.|+++
T Consensus 237 ~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 237 KIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHTHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999973
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=6e-25 Score=221.15 Aligned_cols=241 Identities=20% Similarity=0.247 Sum_probs=208.8
Q ss_pred cCChHHHHHhhccCChHHHHHHHHHHHHhc-CCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHH
Q 037612 188 EGGVGPLLKLVKEGKPEGQENAARAIGLLG-RDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQD 266 (663)
Q Consensus 188 ~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs-~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~ 266 (663)
....++++++|.++++..|..|+++|.++. .+++++..+++.|+||.|+++|++++++++..|+++|.+|+..+++.+.
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 346999999999999999999999997755 5778899999999999999999999999999999999999987899999
Q ss_pred HHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCcc
Q 037612 267 LFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQ 346 (663)
Q Consensus 267 ~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~ 346 (663)
.+.+.|++|+|+.+|++++
T Consensus 91 ~i~~~g~i~~L~~lL~~~~------------------------------------------------------------- 109 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPN------------------------------------------------------------- 109 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSC-------------------------------------------------------------
T ss_pred HHHHcCCHHHHHHHHcCCC-------------------------------------------------------------
Confidence 9999999999999996431
Q ss_pred chhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHH
Q 037612 347 MHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARA 426 (663)
Q Consensus 347 ~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~A 426 (663)
+ .++..|+++
T Consensus 110 ------------------------------------------------------------------~----~v~~~a~~~ 119 (252)
T 4db8_A 110 ------------------------------------------------------------------E----QILQEALWA 119 (252)
T ss_dssp ------------------------------------------------------------------H----HHHHHHHHH
T ss_pred ------------------------------------------------------------------H----HHHHHHHHH
Confidence 1 247788999
Q ss_pred HHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhh
Q 037612 427 LWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIE 506 (663)
Q Consensus 427 L~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~ 506 (663)
|++|+.+....+..+.+.|+++.|+.+|++++++++.+++|+|++|+... ++.++ .++
T Consensus 120 L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~---~~~~~------------------~~~- 177 (252)
T 4db8_A 120 LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG---NEQIQ------------------AVI- 177 (252)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC---HHHHH------------------HHH-
T ss_pred HHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC---hHHHH------------------HHH-
Confidence 99999977666689999999999999999999999999999999997543 22111 011
Q ss_pred hcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHH
Q 037612 507 KADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQ 586 (663)
Q Consensus 507 ~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~ 586 (663)
+.++||+|+++|++.+++++..|+++|++++... +++...+++.|++++|++
T Consensus 178 ------------------------~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~----~~~~~~~~~~g~i~~L~~ 229 (252)
T 4db8_A 178 ------------------------DAGALPALVQLLSSPNEQILQEALWALSNIASGG----NEQKQAVKEAGALEKLEQ 229 (252)
T ss_dssp ------------------------HTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC----HHHHHHHHHTTHHHHHHT
T ss_pred ------------------------HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC----HHHHHHHHHCCcHHHHHH
Confidence 2579999999999999999999999999998543 577788999999999999
Q ss_pred HHhcCChhHHHHHHHHHHHHhcC
Q 037612 587 LVYFGEQIVQLSALVLLCYIALH 609 (663)
Q Consensus 587 LL~~~~~~~q~~Al~~L~~la~~ 609 (663)
++..+++.++..|+++|++++.|
T Consensus 230 ll~~~~~~v~~~A~~~L~~l~~~ 252 (252)
T 4db8_A 230 LQSHENEKIQKEAQEALEKLQSH 252 (252)
T ss_dssp TTTCSSSHHHHTHHHHHHTTC--
T ss_pred HhCCCCHHHHHHHHHHHHHHhcC
Confidence 99999998999999999998643
No 31
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=7.1e-23 Score=236.51 Aligned_cols=326 Identities=14% Similarity=0.125 Sum_probs=257.6
Q ss_pred hHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHh-cCChHHHHHhhcc-CChHHHHHHHHHHHHhcCCCc
Q 037612 144 ILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIE-EGGVGPLLKLVKE-GKPEGQENAARAIGLLGRDPE 221 (663)
Q Consensus 144 i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive-~G~Ip~Lv~LL~s-g~~~~q~~Aa~AL~nLs~~~~ 221 (663)
+.-+...++..|.. ++.+.+.+|.+.|.+|+.+ +..|+.+++ .|.+..|+++|++ ++...+..++..|.||+.+.+
T Consensus 332 i~~La~~~~~~L~~-~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~ 409 (778)
T 3opb_A 332 LKQLSEIFINAISR-RIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPE 409 (778)
T ss_dssp HHHHHHHHHHHTTT-CCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhc-CCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCc
Confidence 34455666777777 7777799999999999876 455777765 4669999999995 678899999999999996432
Q ss_pred ---------------------------------------chHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCCh
Q 037612 222 ---------------------------------------SVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYP 262 (663)
Q Consensus 222 ---------------------------------------~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~ 262 (663)
++..++++|+||+|+.+++++++.+|+.++|+|.||+. ++
T Consensus 410 ~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~ 488 (778)
T 3opb_A 410 EXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SK 488 (778)
T ss_dssp CCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SG
T ss_pred ccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CH
Confidence 46678899999999999999999999999999999996 58
Q ss_pred hHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCC
Q 037612 263 KCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNK 342 (663)
Q Consensus 263 ~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~ 342 (663)
++|..+++.|++++|+.+|.+++..+
T Consensus 489 ~~R~~lvqqGal~~LL~lL~s~~~~~------------------------------------------------------ 514 (778)
T 3opb_A 489 NFIPQLAQQGAVKIILEYLANKQDIG------------------------------------------------------ 514 (778)
T ss_dssp GGHHHHHHTTHHHHHHHHTTCC---C------------------------------------------------------
T ss_pred HHHHHHHHCCCHHHHHHHHhcCCCcc------------------------------------------------------
Confidence 99999999999999999997653000
Q ss_pred CCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHH
Q 037612 343 TPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAM 422 (663)
Q Consensus 343 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~ 422 (663)
+ ..|..
T Consensus 515 ---------------------------------------------------------------------~-----~~k~~ 520 (778)
T 3opb_A 515 ---------------------------------------------------------------------E-----PIRIL 520 (778)
T ss_dssp ---------------------------------------------------------------------C-----HHHHH
T ss_pred ---------------------------------------------------------------------h-----HHHHH
Confidence 0 13678
Q ss_pred HHHHHHHHhc-CChhhhHHH-hhhccHHHHHHHhhc--CCh------------hHHHHHHHHHHHHhhhhhcc-HHHHhh
Q 037612 423 AARALWHLAK-GNSPICRSI-TESRALLCFAVLLEK--GPE------------DVQYNSAMALMEITAVAEKD-AELRRS 485 (663)
Q Consensus 423 Aa~AL~~La~-gn~~~~~~I-~esgal~~L~~LL~~--~~~------------~vq~~aa~AL~~i~a~a~~~-~~~rr~ 485 (663)
|+.||.++.. .|+.+.-.- .-.+++++|+.||.. +.. -.+++|++||.||+....++ .++|+.
T Consensus 521 AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~ 600 (778)
T 3opb_A 521 GCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKH 600 (778)
T ss_dssp HHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHH
Confidence 8889988884 333331100 013899999999983 221 23889999999998765322 346664
Q ss_pred hcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhH-------h----hccHHHHHHhcccCCHHHHHHHH
Q 037612 486 AFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKAT-------E----TRMIVPLVKLLDEREAEVSREAS 554 (663)
Q Consensus 486 a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~-------e----~~~I~pLV~LL~~~~~~v~~eAa 554 (663)
+++. +++++.|..++.+.++.++..|+..|.||+...... + .+.+++||.|+++.+.+++++|+
T Consensus 601 Ii~~-----~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAa 675 (778)
T 3opb_A 601 IVST-----KVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVA 675 (778)
T ss_dssp HHHS-----HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHh-----cCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHH
Confidence 3322 368899999999888899999999999998654321 1 12489999999999999999999
Q ss_pred HHHHhcccCCCCCChhhHHHHHHc-CCHHHHHHHHhc--CChhHHHHHHHHHHHHhcC
Q 037612 555 IALTKFACSDNYLHSDHSKAIISA-GGAKHLVQLVYF--GEQIVQLSALVLLCYIALH 609 (663)
Q Consensus 555 ~AL~~la~~~~~~~~~~~~~Iv~~-ggi~~Lv~LL~~--~~~~~q~~Al~~L~~la~~ 609 (663)
|||++++++. +..++.|++. +|+++|+.++.. +++.+|.+++.+++||+.-
T Consensus 676 gALAnLts~~----~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 676 AIFANIATTI----PLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHHHHHHHHC----HHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCC----hHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 9999997543 4567889998 899999999999 7888999999999999863
No 32
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.91 E-value=7.8e-24 Score=214.88 Aligned_cols=206 Identities=13% Similarity=0.095 Sum_probs=171.5
Q ss_pred HHHHHHHHhccCCCH--HHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC-CCcch
Q 037612 147 LIWEQVAILYTAGSL--EHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR-DPESV 223 (663)
Q Consensus 147 ~v~~li~~L~~~G~~--e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~-~~~~~ 223 (663)
.+..+|..|++ ++. +.+..|+++|.+|+..++.+|..|++.|+||+||++|+++++.+|+.|+|||.||+. +++|+
T Consensus 9 ~i~~lV~lL~s-~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEA-DHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCS-SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCC-CCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 34556999999 987 889999999999998889999999999999999999999999999999999999997 68999
Q ss_pred HHHHHcCchHHHHHhhc-cCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhc---cCccchhhhHHHhhhhh
Q 037612 224 EHMIHSGVCLVFAKILK-EGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLA---FETVQEHSKYAIVSKAT 299 (663)
Q Consensus 224 ~~iv~aGaIp~Lv~lL~-s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~---sgt~~~~s~~~v~~~~~ 299 (663)
..|+++|+||+|+++|+ +++.+++++|+.+|.||+. .++++..|.++ +||+|+.++. +|....
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~----------- 154 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMITE-ALLTLTENIIIPFSGWPEG----------- 154 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHHH-HHHHHCCCCCHHHHCCCGG-----------
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHhc-cHHHHHHHHhccccCCccc-----------
Confidence 99999999999999998 5789999999999999997 46778888774 7999998874 121000
Q ss_pred hHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccc
Q 037612 300 SIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKS 379 (663)
Q Consensus 300 sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~ 379 (663)
T Consensus 155 -------------------------------------------------------------------------------- 154 (233)
T 3tt9_A 155 -------------------------------------------------------------------------------- 154 (233)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhh-ccHHHHHHHhhcC-
Q 037612 380 NGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITES-RALLCFAVLLEKG- 457 (663)
Q Consensus 380 ~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~es-gal~~L~~LL~~~- 457 (663)
...+.....|+ .++.+|+.+|+||+.++.++.+.|.+. |.+++|+.+++.+
T Consensus 155 -----------------------~~~~~~~~~~~----~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~ 207 (233)
T 3tt9_A 155 -----------------------DYPKANGLLDF----DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTI 207 (233)
T ss_dssp -----------------------GCCCCCTTCCH----HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHH
T ss_pred -----------------------ccccccccchH----HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhh
Confidence 00001111244 359999999999999888999999876 5579999999853
Q ss_pred -----ChhHHHHHHHHHHHHh
Q 037612 458 -----PEDVQYNSAMALMEIT 473 (663)
Q Consensus 458 -----~~~vq~~aa~AL~~i~ 473 (663)
+...+++|+.+|.|++
T Consensus 208 ~~~~~~~k~~En~v~~L~nLs 228 (233)
T 3tt9_A 208 ADYQPDDKATENCVCILHNLS 228 (233)
T ss_dssp HTTCTTCHHHHHHHHHHHHHC
T ss_pred hcccchhHHHHHHHHHHHHHH
Confidence 4578999999999986
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.91 E-value=7.6e-23 Score=200.40 Aligned_cols=191 Identities=18% Similarity=0.222 Sum_probs=177.2
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhc-CCCcchHHHHHc
Q 037612 151 QVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLG-RDPESVEHMIHS 229 (663)
Q Consensus 151 li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs-~~~~~~~~iv~a 229 (663)
++.+|++ ++.+.|..|+++|.+++..++.++..+++.|+||+|+++|+++++..++.|+++|+||+ .+++++..+++.
T Consensus 17 l~~LL~s-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 95 (210)
T 4db6_A 17 MVQQLNS-PDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 95 (210)
T ss_dssp HHHHTTC-SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHhcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHC
Confidence 4778899 99999999999999999888999999999999999999999999999999999999999 477889999999
Q ss_pred CchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhc
Q 037612 230 GVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASN 309 (663)
Q Consensus 230 GaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~ 309 (663)
|++|.|+++|+++++.++..|+|+|+||+.++++.+..+.+.|+||+|+.+|++++
T Consensus 96 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~------------------------ 151 (210)
T 4db6_A 96 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN------------------------ 151 (210)
T ss_dssp TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC------------------------
T ss_pred CCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCC------------------------
Confidence 99999999999999999999999999999888888888999999999999996431
Q ss_pred ccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcccccc
Q 037612 310 KTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQN 389 (663)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~ 389 (663)
T Consensus 152 -------------------------------------------------------------------------------- 151 (210)
T 4db6_A 152 -------------------------------------------------------------------------------- 151 (210)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHH
Q 037612 390 HQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMAL 469 (663)
Q Consensus 390 ~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL 469 (663)
..++..|+.+|++|+.++..++..+.+.|+++.|+.+++++++++|++|+++|
T Consensus 152 ---------------------------~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL 204 (210)
T 4db6_A 152 ---------------------------EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 204 (210)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 12477889999999999899999999999999999999999999999999999
Q ss_pred HHHh
Q 037612 470 MEIT 473 (663)
Q Consensus 470 ~~i~ 473 (663)
.+++
T Consensus 205 ~~l~ 208 (210)
T 4db6_A 205 EKLQ 208 (210)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 9885
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.90 E-value=4e-22 Score=195.24 Aligned_cols=199 Identities=18% Similarity=0.253 Sum_probs=173.9
Q ss_pred hcCChHHHHHhhccCChHHHHHHHHHHHHhc-CCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHH
Q 037612 187 EEGGVGPLLKLVKEGKPEGQENAARAIGLLG-RDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQ 265 (663)
Q Consensus 187 e~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs-~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r 265 (663)
..|+.|+|+.||+++++..|..|+++|.+|+ .+++++..+++.|+||.|+++|++++++++..|+|+|+||+.++++.+
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 4688999999999999999999999999999 577889999999999999999999999999999999999998788999
Q ss_pred HHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCc
Q 037612 266 DLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPS 345 (663)
Q Consensus 266 ~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~ 345 (663)
..+.+.|+||+|+.+|+++.
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~------------------------------------------------------------ 109 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPN------------------------------------------------------------ 109 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSC------------------------------------------------------------
T ss_pred HHHHHCCCHHHHHHHHcCCc------------------------------------------------------------
Confidence 99999999999999996431
Q ss_pred cchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHH
Q 037612 346 QMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAAR 425 (663)
Q Consensus 346 ~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~ 425 (663)
+ .++..|++
T Consensus 110 -------------------------------------------------------------------~----~v~~~a~~ 118 (210)
T 4db6_A 110 -------------------------------------------------------------------E----QILQEALW 118 (210)
T ss_dssp -------------------------------------------------------------------H----HHHHHHHH
T ss_pred -------------------------------------------------------------------H----HHHHHHHH
Confidence 1 24778999
Q ss_pred HHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHh
Q 037612 426 ALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRII 505 (663)
Q Consensus 426 AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll 505 (663)
+|++|+.++...+..+.+.|+++.|+.+|++++.+++.+|+++|++++... ++.++. +
T Consensus 119 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~---~~~~~~------------------~- 176 (210)
T 4db6_A 119 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG---NEQKQA------------------V- 176 (210)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC---HHHHHH------------------H-
T ss_pred HHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC---cHHHHH------------------H-
Confidence 999999999999999999999999999999999999999999999997542 222220 1
Q ss_pred hhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhccc
Q 037612 506 EKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFAC 562 (663)
Q Consensus 506 ~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~ 562 (663)
.+.++|++|+++|++.+++++++|+++|.++++
T Consensus 177 ------------------------~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 177 ------------------------KEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp ------------------------HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred ------------------------HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 125789999999999999999999999999973
No 35
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.89 E-value=7.4e-23 Score=207.71 Aligned_cols=196 Identities=19% Similarity=0.202 Sum_probs=161.6
Q ss_pred ChHHHHHhhccCCh--HHHHHHHHHHHHhc-CCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHH
Q 037612 190 GVGPLLKLVKEGKP--EGQENAARAIGLLG-RDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQD 266 (663)
Q Consensus 190 ~Ip~Lv~LL~sg~~--~~q~~Aa~AL~nLs-~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~ 266 (663)
.||+||++|.++++ ..|..|+++|.+|+ .+++++..|++.|+||+||++|+++++++|+.|+|+|.||+..+++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 59999999999987 89999999999999 5788999999999999999999999999999999999999987889999
Q ss_pred HHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCcc
Q 037612 267 LFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQ 346 (663)
Q Consensus 267 ~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~ 346 (663)
.|.+.|+||+||.+|++..
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~------------------------------------------------------------- 107 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTR------------------------------------------------------------- 107 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCC-------------------------------------------------------------
T ss_pred HHHHcCCHHHHHHHHccCC-------------------------------------------------------------
Confidence 9999999999999996310
Q ss_pred chhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHH
Q 037612 347 MHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARA 426 (663)
Q Consensus 347 ~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~A 426 (663)
+ ..+++.|+.|
T Consensus 108 -----------------------------------------------------------------~----~~~~e~a~~a 118 (233)
T 3tt9_A 108 -----------------------------------------------------------------D----LETKKQITGL 118 (233)
T ss_dssp -----------------------------------------------------------------C----HHHHHHHHHH
T ss_pred -----------------------------------------------------------------C----HHHHHHHHHH
Confidence 1 1247889999
Q ss_pred HHHHhcCChhhhHHHhhhccHHHHHHHhh---c-------------CChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCC
Q 037612 427 LWHLAKGNSPICRSITESRALLCFAVLLE---K-------------GPEDVQYNSAMALMEITAVAEKDAELRRSAFKPN 490 (663)
Q Consensus 427 L~~La~gn~~~~~~I~esgal~~L~~LL~---~-------------~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~ 490 (663)
||+|+. ++.+...|.+ +++++|+.++. + .++++++||+.+|++++.. +++.|+..-.
T Consensus 119 L~nLS~-~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~---~~~~R~~~r~-- 191 (233)
T 3tt9_A 119 LWNLSS-NDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSA---GADGRKAMRR-- 191 (233)
T ss_dssp HHHHHT-SGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTS---CHHHHHHHHT--
T ss_pred HHHHHc-ChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcC---CHHHHHHHHH--
Confidence 999996 6788888887 57999998763 1 2569999999999999764 3344553211
Q ss_pred CchhHhHHHHHHHHhhhc------CcchhhHHHHHHHHhhh
Q 037612 491 APACKAVVDQLFRIIEKA------DSDLLIPCIKAVGNLAR 525 (663)
Q Consensus 491 ~~a~~~vv~qL~~ll~~~------~~~l~~~a~~aLg~La~ 525 (663)
+.++|+.|+.+++.. ++..++.|+++|.||+.
T Consensus 192 ---~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 192 ---CDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp ---STTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred ---CCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 246788888888763 34567888888888864
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.89 E-value=3.3e-22 Score=210.06 Aligned_cols=233 Identities=14% Similarity=0.140 Sum_probs=181.6
Q ss_pred CChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHH-hhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHH
Q 037612 201 GKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAK-ILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVG 279 (663)
Q Consensus 201 g~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~-lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~ 279 (663)
++.+.+..|+..|.+++.+.+|...+++.|++|+|+. +|+++++++++.|+|+|++++.+++++|+.+.+.|++|+|+.
T Consensus 52 ~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~ 131 (296)
T 1xqr_A 52 ADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 3567899999999999999899999999999999999 999999999999999999999999999999999999999999
Q ss_pred HhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhc
Q 037612 280 HLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKV 359 (663)
Q Consensus 280 LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~ 359 (663)
+|++++
T Consensus 132 LL~~~~-------------------------------------------------------------------------- 137 (296)
T 1xqr_A 132 LLDRDA-------------------------------------------------------------------------- 137 (296)
T ss_dssp HHHHCS--------------------------------------------------------------------------
T ss_pred HHccCC--------------------------------------------------------------------------
Confidence 996321
Q ss_pred CCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhH
Q 037612 360 GTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICR 439 (663)
Q Consensus 360 ~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~ 439 (663)
+ ..+++.|++||++|++|+.....
T Consensus 138 ----------------------------------------------------~----~~v~~~A~~ALsnl~~~~~~~~~ 161 (296)
T 1xqr_A 138 ----------------------------------------------------C----DTVRVKALFAISCLVREQEAGLL 161 (296)
T ss_dssp ----------------------------------------------------C----HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ----------------------------------------------------C----HHHHHHHHHHHHHHHcCCcHHHH
Confidence 0 02356677777777766543322
Q ss_pred HHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHH
Q 037612 440 SITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKA 519 (663)
Q Consensus 440 ~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~a 519 (663)
.+.+
T Consensus 162 ~~~~---------------------------------------------------------------------------- 165 (296)
T 1xqr_A 162 QFLR---------------------------------------------------------------------------- 165 (296)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 1111
Q ss_pred HHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHH
Q 037612 520 VGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSA 599 (663)
Q Consensus 520 Lg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~A 599 (663)
.++||+|+++|+++++.++++|+|||++++.+. +++...+++.|++++|+.||.++++.+|+.|
T Consensus 166 ------------~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~----~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~a 229 (296)
T 1xqr_A 166 ------------LDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH----PEHKGTLCSMGMVQQLVALVRTEHSPFHEHV 229 (296)
T ss_dssp ------------TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHTTHHHHHHHHHTSCCSTHHHHH
T ss_pred ------------CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC----hHHHHHHHHcCCHHHHHHHHcCCChhHHHHH
Confidence 357788888888888888888888888887653 4778899999999999999999999899999
Q ss_pred HHHHHHHhcCCCChHHHHhcc---chhhhhhccccccccccC-CcHHHHHHHHHHHHhhhhcC
Q 037612 600 LVLLCYIALHVPDSEDLAQAE---VLTVLEWTSKQSHMTQDE-TVDPLLQDAKSRLELYQSRG 658 (663)
Q Consensus 600 l~~L~~la~~~~~~~~i~~~~---vl~~L~~~~~~~~~~q~~-~~~~l~~~a~~~le~~~~~~ 658 (663)
+.+|++|+...+........+ ....|+.. ....|.+ +.+++|.++..+++.|++..
T Consensus 230 l~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~---~~~lq~~e~~~e~~~~~~~il~~~f~~~ 289 (296)
T 1xqr_A 230 LGALCSLVTDFPQGVRECREPELGLEELLRHR---CQLLQQHEEYQEELEFCEKLLQTCFSSP 289 (296)
T ss_dssp HHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHH---HHHHTTCGGGHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHhCChhHHHHHhccHHHHHHHHHHH---HHHccchHHHHHHHHHHHHHHHHHcCCC
Confidence 999999987643322222222 23344422 3445644 58999999999999999743
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.87 E-value=1.5e-21 Score=205.12 Aligned_cols=185 Identities=15% Similarity=0.118 Sum_probs=168.2
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHH-hhccCChHHHHHHHHHHHHhcC-CCcchHHHHHcCchHHHH
Q 037612 159 GSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLK-LVKEGKPEGQENAARAIGLLGR-DPESVEHMIHSGVCLVFA 236 (663)
Q Consensus 159 G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~-LL~sg~~~~q~~Aa~AL~nLs~-~~~~~~~iv~aGaIp~Lv 236 (663)
++.+.|..|+..|.++... ..|...+++.|++|+||. +|+++++.+|+.|+|+|+|++. ++.++..+++.|++|+|+
T Consensus 52 ~~~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 52 ADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence 4568999999999999864 668999999999999999 9999999999999999999996 567899999999999999
Q ss_pred Hhhcc-CChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccc
Q 037612 237 KILKE-GPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNAN 315 (663)
Q Consensus 237 ~lL~s-~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~ 315 (663)
++|++ .++.+++.|+|||+||+.+++..++.|.+.|+||+|+.+|+++.
T Consensus 131 ~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d------------------------------ 180 (296)
T 1xqr_A 131 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV------------------------------ 180 (296)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSC------------------------------
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCC------------------------------
Confidence 99986 47899999999999999888888889999999999999996431
Q ss_pred cCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcccccccccccc
Q 037612 316 ANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQ 395 (663)
Q Consensus 316 ~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~ 395 (663)
T Consensus 181 -------------------------------------------------------------------------------- 180 (296)
T 1xqr_A 181 -------------------------------------------------------------------------------- 180 (296)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhh
Q 037612 396 HGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAV 475 (663)
Q Consensus 396 ~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~ 475 (663)
.++|..|++||.+|+.+++..+..+.+.|++++|+.||.+++.++++.+++||.+|..+
T Consensus 181 ---------------------~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 181 ---------------------QKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred ---------------------HHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 12577899999999999999999999999999999999999999999999999999866
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.87 E-value=8.6e-21 Score=219.23 Aligned_cols=294 Identities=12% Similarity=0.110 Sum_probs=224.8
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCCh--------------------------------------hhHHHHHhc
Q 037612 147 LIWEQVAILYTAGSLEHKSDAAASLVSLARDND--------------------------------------RYGKLIIEE 188 (663)
Q Consensus 147 ~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~--------------------------------------~~~~~Ive~ 188 (663)
.+..|+.+++..++...-..++..|.||+...+ .+++.+.+.
T Consensus 377 ~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~ea 456 (778)
T 3opb_A 377 FTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRT 456 (778)
T ss_dssp HHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHC
Confidence 345567777731555667778888888865322 167888999
Q ss_pred CChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChh---HHHHHHHHHHHHhcCChhHH
Q 037612 189 GGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMK---VQAVVAWAVSELAGNYPKCQ 265 (663)
Q Consensus 189 G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~---vq~~Aa~aL~nLA~~~~~~r 265 (663)
|+||+|+.+++++++..|+.|+|+|.|||.++++|..+++.|++++|+++|.+++.. ++..|+.||++|+... +..
T Consensus 457 GvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~-np~ 535 (778)
T 3opb_A 457 ELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFT-NPG 535 (778)
T ss_dssp THHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTS-CHH
T ss_pred cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcC-CHH
Confidence 999999999999999999999999999999999999999999999999999998654 8999999999999532 222
Q ss_pred HHHHh---CCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCC
Q 037612 266 DLFAQ---HNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNK 342 (663)
Q Consensus 266 ~~i~~---~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~ 342 (663)
..|.. .|+||||++||..++.... . ++
T Consensus 536 ~~f~~~~~~~aI~pLv~LL~~~~~~~~--~-------~l----------------------------------------- 565 (778)
T 3opb_A 536 LIFKKYSALNAIPFLFELLPRSTPVDD--N-------PL----------------------------------------- 565 (778)
T ss_dssp HHSSSSCSTTHHHHHHHTSCCSSSCSS--C-------C------------------------------------------
T ss_pred HHcCCCccccchHHHHHHcCCCCCccc--c-------cc-----------------------------------------
Confidence 33421 3999999999974320000 0 00
Q ss_pred CCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHH
Q 037612 343 TPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAM 422 (663)
Q Consensus 343 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~ 422 (663)
. .++.-+ ...+..
T Consensus 566 ------------------------------------~---------------------------~~~~~~----~l~~fe 578 (778)
T 3opb_A 566 ------------------------------------H---------------------------NDEQIK----LTDNYE 578 (778)
T ss_dssp -----------------------------------------------------------------CCCCC----HHHHHH
T ss_pred ------------------------------------c---------------------------cccccc----HHHHHH
Confidence 0 000000 124778
Q ss_pred HHHHHHHHhcCC----hhhhHHHhh-hccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHH-hhhcCCCCchhHh
Q 037612 423 AARALWHLAKGN----SPICRSITE-SRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELR-RSAFKPNAPACKA 496 (663)
Q Consensus 423 Aa~AL~~La~gn----~~~~~~I~e-sgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~r-r~a~~~~~~a~~~ 496 (663)
|+.||.|||..+ .+.+..|.+ .|++++|..||.+++..+|..|+++|+|++...+ .+ +..|....|.+..
T Consensus 579 AL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e----~i~~k~~~~~~~~~~~ 654 (778)
T 3opb_A 579 ALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPL----TIAAKFFNLENPQSLR 654 (778)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGG----GTGGGTSCCSSHHHHH
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcH----HHHHHHHhhcCchhhc
Confidence 999999999976 245777887 4999999999999999999999999999986433 22 2245444555555
Q ss_pred HHHHHHHHhhhcCcchhhHHHHHHHHhhhchhh--H---h-hccHHHHHHhccc--CCHHHHHHHHHHHHhccc
Q 037612 497 VVDQLFRIIEKADSDLLIPCIKAVGNLARTFKA--T---E-TRMIVPLVKLLDE--REAEVSREASIALTKFAC 562 (663)
Q Consensus 497 vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~--~---e-~~~I~pLV~LL~~--~~~~v~~eAa~AL~~la~ 562 (663)
-++.|+.++..+|++++..|+.||++++..+.. . + .++|.+|+++|.+ .+++++..++.+|.|+++
T Consensus 655 rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 655 NFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999754433 1 2 4799999999998 899999999999999985
No 39
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.52 E-value=1.8e-12 Score=132.58 Aligned_cols=250 Identities=14% Similarity=0.091 Sum_probs=178.5
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHH
Q 037612 149 WEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIH 228 (663)
Q Consensus 149 ~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~ 228 (663)
..++..|.. ++...|..|+++|+.+.. .+.+++|+++|++.++..+..|+++|+.+...+.....
T Consensus 26 ~~L~~~L~~-~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~--- 90 (280)
T 1oyz_A 26 DELFRLLDD-HNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN--- 90 (280)
T ss_dssp HHHHHHTTC-SSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH---
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH---
Confidence 345778888 899999999999998751 24689999999988899999999999998754332211
Q ss_pred cCchHHHHH-hhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHh
Q 037612 229 SGVCLVFAK-ILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVA 307 (663)
Q Consensus 229 aGaIp~Lv~-lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~ 307 (663)
.++.|.+ +++++++.++..++++|+++...++... ..+++.|+.+|.+.
T Consensus 91 --l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~----------------------- 140 (280)
T 1oyz_A 91 --VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDK----------------------- 140 (280)
T ss_dssp --HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCS-----------------------
T ss_pred --HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCC-----------------------
Confidence 3344442 4567888999999999999974332211 12344444444321
Q ss_pred hcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcccc
Q 037612 308 SNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVK 387 (663)
Q Consensus 308 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~ 387 (663)
T Consensus 141 -------------------------------------------------------------------------------- 140 (280)
T 1oyz_A 141 -------------------------------------------------------------------------------- 140 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHH
Q 037612 388 QNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAM 467 (663)
Q Consensus 388 ~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~ 467 (663)
++ .++..|+.+|+++.. ..+++.|..+|+..+++|+..+++
T Consensus 141 ------------------------~~----~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~ 181 (280)
T 1oyz_A 141 ------------------------ST----NVRRATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAF 181 (280)
T ss_dssp ------------------------CH----HHHHHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHH
T ss_pred ------------------------CH----HHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22 246678888876532 347889999999999999999999
Q ss_pred HHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCH
Q 037612 468 ALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREA 547 (663)
Q Consensus 468 AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~ 547 (663)
+|..+... + ..+++.|+.++++.++.++..++.+||.+. ....+++|+.+|.+.+
T Consensus 182 aL~~~~~~---~---------------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~------~~~~~~~L~~~l~d~~- 236 (280)
T 1oyz_A 182 AININKYD---N---------------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK------DKRVLSVLCDELKKNT- 236 (280)
T ss_dssp HHHHHTCC---C---------------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT------CGGGHHHHHHHHTSSS-
T ss_pred HHHhhccC---c---------------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC------CHhhHHHHHHHhcCcc-
Confidence 99877311 1 235678888998888899999999999886 3468999999997654
Q ss_pred HHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHH
Q 037612 548 EVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFG-EQIVQLSALVLL 603 (663)
Q Consensus 548 ~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~-~~~~q~~Al~~L 603 (663)
++..|++||+++.. ...++.|..++... ++.....++..|
T Consensus 237 -vr~~a~~aL~~i~~---------------~~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 237 -VYDDIIEAAGELGD---------------KTLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp -CCHHHHHHHHHHCC---------------GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcCc---------------hhhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 89999999999842 14688899988754 444444455554
No 40
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.52 E-value=8.1e-13 Score=135.18 Aligned_cols=259 Identities=15% Similarity=0.115 Sum_probs=192.1
Q ss_pred HHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhH
Q 037612 185 IIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKC 264 (663)
Q Consensus 185 Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~ 264 (663)
+.+.+.++.|+.+|+++++..+..|+++|+++.. .++++.|+++|+++++.++..|+++|+.+....
T Consensus 19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~--- 85 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK--- 85 (280)
T ss_dssp HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT---
T ss_pred HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc---
Confidence 3456789999999999999999999999999972 357899999999999999999999999987432
Q ss_pred HHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCC
Q 037612 265 QDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTP 344 (663)
Q Consensus 265 r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~ 344 (663)
..++.++.+|..- +. .
T Consensus 86 -------~~~~~l~~~L~~~-------------------~~---~----------------------------------- 101 (280)
T 1oyz_A 86 -------KCEDNVFNILNNM-------------------AL---N----------------------------------- 101 (280)
T ss_dssp -------TTHHHHHHHHHHH-------------------HH---H-----------------------------------
T ss_pred -------ccchHHHHHHHHH-------------------Hh---c-----------------------------------
Confidence 1244455544210 00 0
Q ss_pred ccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHH
Q 037612 345 SQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAA 424 (663)
Q Consensus 345 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa 424 (663)
-+|+ .++..|+
T Consensus 102 -----------------------------------------------------------------d~~~----~vr~~a~ 112 (280)
T 1oyz_A 102 -----------------------------------------------------------------DKSA----CVRATAI 112 (280)
T ss_dssp -----------------------------------------------------------------CSCH----HHHHHHH
T ss_pred -----------------------------------------------------------------CCCH----HHHHHHH
Confidence 0122 2578899
Q ss_pred HHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHH
Q 037612 425 RALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRI 504 (663)
Q Consensus 425 ~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~l 504 (663)
.+|+++..+++.. ....++.|..+|.+.++.++..++++|.++.. ..+++.|+++
T Consensus 113 ~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------------------~~~~~~L~~~ 167 (280)
T 1oyz_A 113 ESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAFAISVIND--------------------KATIPLLINL 167 (280)
T ss_dssp HHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------------------CCHHHHHHH
T ss_pred HHHHHHhccCCcc-----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHH
Confidence 9999887654322 23568899999999999999999999986631 1257889999
Q ss_pred hhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHH
Q 037612 505 IEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHL 584 (663)
Q Consensus 505 l~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~L 584 (663)
+.+.++.++..++.+||.+... ....+++|+.+|++.++.|+.+|+++|+++.. ...++.|
T Consensus 168 l~d~~~~vr~~a~~aL~~~~~~----~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~---------------~~~~~~L 228 (280)
T 1oyz_A 168 LKDPNGDVRNWAAFAININKYD----NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD---------------KRVLSVL 228 (280)
T ss_dssp HTCSSHHHHHHHHHHHHHHTCC----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC---------------GGGHHHH
T ss_pred HcCCCHHHHHHHHHHHHhhccC----cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC---------------HhhHHHH
Confidence 9998899999999999988522 23579999999999999999999999999852 2378999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHhcCCCChHHHHhccchhhhhhccccccccccCCcHHHHHHHHHHH
Q 037612 585 VQLVYFGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRL 651 (663)
Q Consensus 585 v~LL~~~~~~~q~~Al~~L~~la~~~~~~~~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~l 651 (663)
+.+|..++ ++..|+.+|..+. + ..+++.|. ...+++...++..++...|
T Consensus 229 ~~~l~d~~--vr~~a~~aL~~i~----~------~~~~~~L~------~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 229 CDELKKNT--VYDDIIEAAGELG----D------KTLLPVLD------TMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp HHHHTSSS--CCHHHHHHHHHHC----C------GGGHHHHH------HHHTTSSCCHHHHHHHHHH
T ss_pred HHHhcCcc--HHHHHHHHHHhcC----c------hhhhHHHH------HHHhcCCCcHHHHHHHHHh
Confidence 99998755 6667888887762 1 35677776 3333334445555555544
No 41
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.43 E-value=8.4e-12 Score=141.39 Aligned_cols=291 Identities=13% Similarity=0.105 Sum_probs=210.9
Q ss_pred HHHHHHHhccCC-CHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC--ChHHHHHHHHHHHHhcC-CCc--
Q 037612 148 IWEQVAILYTAG-SLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEG--KPEGQENAARAIGLLGR-DPE-- 221 (663)
Q Consensus 148 v~~li~~L~~~G-~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg--~~~~q~~Aa~AL~nLs~-~~~-- 221 (663)
|..|+.+|++ + -.+.|+.|...|.++++ +|+..++ .+|+|+|+..|+.+ +.+.-+.+..+|.++-. +++
T Consensus 23 I~~L~~Rl~~-~tl~eDRR~Av~~Lk~~sk---~y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~ 97 (651)
T 3grl_A 23 IQKLCDRVAS-STLLDDRRNAVRALKSLSK---KYRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEE 97 (651)
T ss_dssp HHHHHHHHHH-CCSHHHHHHHHHHHHHTTT---TTTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC----
T ss_pred HHHHHHHHhh-ccchhHHHHHHHHHHHHHH---HhHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCccc
Confidence 4456889999 6 58999999999999985 3666665 78999999999975 57888889999988764 222
Q ss_pred ---------------chHHH-HHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChh-HHHHHHh-CCcHHHHHHHhcc
Q 037612 222 ---------------SVEHM-IHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPK-CQDLFAQ-HNIIRLLVGHLAF 283 (663)
Q Consensus 222 ---------------~~~~i-v~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~-~r~~i~~-~g~I~~LV~LL~s 283 (663)
+...+ -+.+.|+.|+.+|++.+..++-.+...|..|+.+.++ .|+.|.. .++|+.||.+|..
T Consensus 98 ~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d 177 (651)
T 3grl_A 98 VEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD 177 (651)
T ss_dssp ----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC
T ss_pred ccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC
Confidence 11223 3678999999999999999999999999999987776 8988885 5999999999963
Q ss_pred CccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCc
Q 037612 284 ETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKP 363 (663)
Q Consensus 284 gt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~ 363 (663)
..
T Consensus 178 ~r------------------------------------------------------------------------------ 179 (651)
T 3grl_A 178 SR------------------------------------------------------------------------------ 179 (651)
T ss_dssp SS------------------------------------------------------------------------------
T ss_pred ch------------------------------------------------------------------------------
Confidence 21
Q ss_pred ccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhh
Q 037612 364 VQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITE 443 (663)
Q Consensus 364 ~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~e 443 (663)
..++..|...|.+|+++|..+++.+.-
T Consensus 180 -----------------------------------------------------E~iRneallLL~~Lt~~n~~iQklVAF 206 (651)
T 3grl_A 180 -----------------------------------------------------EVIRNDGVLLLQALTRSNGAIQKIVAF 206 (651)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------------------------------------------------HHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 124556778889999999999999999
Q ss_pred hccHHHHHHHhhcCCh----hHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHH
Q 037612 444 SRALLCFAVLLEKGPE----DVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKA 519 (663)
Q Consensus 444 sgal~~L~~LL~~~~~----~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~a 519 (663)
.|+++.|..+++.+.+ .+...|...|.++... |+-.++ .|.
T Consensus 207 EnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~---N~sNQ~-~Fr------------------------------- 251 (651)
T 3grl_A 207 ENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKN---NNSNQN-FFK------------------------------- 251 (651)
T ss_dssp TTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTT---CHHHHH-HHH-------------------------------
T ss_pred hccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhc---CHHHHH-HHH-------------------------------
Confidence 9999999999997554 7777888888777654 333332 122
Q ss_pred HHHhhhchhhHhhccHHHHHHhcccCCHH------HHHH---HHHHHHhcccCCCCC--ChhhHHHHHHcCCHHHHHHHH
Q 037612 520 VGNLARTFKATETRMIVPLVKLLDEREAE------VSRE---ASIALTKFACSDNYL--HSDHSKAIISAGGAKHLVQLV 588 (663)
Q Consensus 520 Lg~La~~~~~~e~~~I~pLV~LL~~~~~~------v~~e---Aa~AL~~la~~~~~~--~~~~~~~Iv~~ggi~~Lv~LL 588 (663)
|++.||+|..+|..+++. ...+ +...+.-|.++++.. ...|++++.+.|++++|++|+
T Consensus 252 -----------Et~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll 320 (651)
T 3grl_A 252 -----------EGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTIL 320 (651)
T ss_dssp -----------HTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred -----------HcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHH
Confidence 344555555555322211 1112 222233334443321 357899999999999999998
Q ss_pred hcC--ChhHHHHHHHHHHHHhcCC-CChHHHHhcc
Q 037612 589 YFG--EQIVQLSALVLLCYIALHV-PDSEDLAQAE 620 (663)
Q Consensus 589 ~~~--~~~~q~~Al~~L~~la~~~-~~~~~i~~~~ 620 (663)
.++ ...++..|+.++..+..+. .+++.+++..
T Consensus 321 ~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~ 355 (651)
T 3grl_A 321 MATGVPADILTETINTVSEVIRGCQVNQDYFASVN 355 (651)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCE
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhcc
Confidence 875 4446778999998887544 4466677543
No 42
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.40 E-value=7.4e-11 Score=133.73 Aligned_cols=328 Identities=15% Similarity=0.161 Sum_probs=230.9
Q ss_pred HHHhccCC--CHHHHHHHHHHHHHhhcCChh-----------------hHHHH-HhcCChHHHHHhhccCChHHHHHHHH
Q 037612 152 VAILYTAG--SLEHKSDAAASLVSLARDNDR-----------------YGKLI-IEEGGVGPLLKLVKEGKPEGQENAAR 211 (663)
Q Consensus 152 i~~L~~~G--~~e~k~~AA~~L~~La~~~~~-----------------~~~~I-ve~G~Ip~Lv~LL~sg~~~~q~~Aa~ 211 (663)
+..|+. . +.|.-..+..+|.++...++. +.+.+ -+.+.|+.|+.+|++.+-..+.++..
T Consensus 66 i~~L~~-d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alq 144 (651)
T 3grl_A 66 IHVLQT-DRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVK 144 (651)
T ss_dssp HHHHHS-CTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHhc-ccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHH
Confidence 777776 4 555666677788776554332 22233 35678999999999999999999999
Q ss_pred HHHHhcCC-Cc-chHHHHHc-CchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccch
Q 037612 212 AIGLLGRD-PE-SVEHMIHS-GVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQE 288 (663)
Q Consensus 212 AL~nLs~~-~~-~~~~iv~a-GaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~ 288 (663)
.|..|+.+ ++ +...|..+ +|||.||.+|.+..+.++..+...|.+|+.++++.|..++-+|+++.|+.+++.+..
T Consensus 145 lL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~-- 222 (651)
T 3grl_A 145 LLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGN-- 222 (651)
T ss_dssp HHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTG--
T ss_pred HHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCC--
Confidence 99999953 44 68888866 999999999999999999999999999999999999999999999999999974310
Q ss_pred hhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccc
Q 037612 289 HSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQG 368 (663)
Q Consensus 289 ~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 368 (663)
T Consensus 223 -------------------------------------------------------------------------------- 222 (651)
T 3grl_A 223 -------------------------------------------------------------------------------- 222 (651)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHH
Q 037612 369 NVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALL 448 (663)
Q Consensus 369 ~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~ 448 (663)
.+| | .+..-|...|.+|.++|+.|+..+-|.+.++
T Consensus 223 ----------~~G--------------------g---------------ivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~ 257 (651)
T 3grl_A 223 ----------SDG--------------------G---------------IVVEDCLILLQNLLKNNNSNQNFFKEGSYIQ 257 (651)
T ss_dssp ----------GGS--------------------H---------------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCGG
T ss_pred ----------Ccc--------------------c---------------hhHHHHHHHHHHHHhcCHHHHHHHHHcCCHH
Confidence 001 0 1345577889999999999999999999999
Q ss_pred HHHHHhhcCCh-----hHHHHHHHHHHHHh----hh-hh--ccHHHHhhhcCCCCchhHhHHHHHHHHhhhcC--cchhh
Q 037612 449 CFAVLLEKGPE-----DVQYNSAMALMEIT----AV-AE--KDAELRRSAFKPNAPACKAVVDQLFRIIEKAD--SDLLI 514 (663)
Q Consensus 449 ~L~~LL~~~~~-----~vq~~aa~AL~~i~----a~-a~--~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~--~~l~~ 514 (663)
.|..||+.+.+ +++..-++++.+|- .. +. .+...+++.++ .+++.+|++++.... ..++.
T Consensus 258 ~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~------~g~l~~Ll~ll~~~~~p~~i~~ 331 (651)
T 3grl_A 258 RMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQ------CGLLQQLCTILMATGVPADILT 331 (651)
T ss_dssp GGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH------TTHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH------CCCHHHHHHHHccCCCCHHHHH
Confidence 99999986543 23333333333332 11 11 12334443222 357889999988753 56889
Q ss_pred HHHHHHHHhhhchhhHhhc----------cHHHHHHh----c-ccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHc-
Q 037612 515 PCIKAVGNLARTFKATETR----------MIVPLVKL----L-DEREAEVSREASIALTKFACSDNYLHSDHSKAIISA- 578 (663)
Q Consensus 515 ~a~~aLg~La~~~~~~e~~----------~I~pLV~L----L-~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~- 578 (663)
.++.++|.+.+.....+.. ..|.++.+ + +...++++.+|+.++..+..+ +.+.+..|+..
T Consensus 332 ~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~----N~~~Q~~i~~~l 407 (651)
T 3grl_A 332 ETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYK----NQKGQGEIVSTL 407 (651)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTT----CHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhC----CHHHHHHHHHhc
Confidence 9999999998865543211 13445554 4 345689999999999888644 34556666643
Q ss_pred -----CC----H---HHHHHHHhcCChhHHHHHHHHHHHHhcCCCChHHHH
Q 037612 579 -----GG----A---KHLVQLVYFGEQIVQLSALVLLCYIALHVPDSEDLA 617 (663)
Q Consensus 579 -----gg----i---~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~~~~i~ 617 (663)
+| + ..|+.-+-+.|+-.---|..+|.++..+.+..++.+
T Consensus 408 lp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K~~~ 458 (651)
T 3grl_A 408 LPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQL 458 (651)
T ss_dssp SSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 21 1 234555556677332348888888877766655543
No 43
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.29 E-value=1.3e-10 Score=113.71 Aligned_cols=187 Identities=21% Similarity=0.210 Sum_probs=151.3
Q ss_pred cCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHH
Q 037612 188 EGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDL 267 (663)
Q Consensus 188 ~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~ 267 (663)
.+.++.|+++|+++++..+..|+.+|..+.. ..+++.|+++|.++++.++..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 4679999999999999999999999998764 3689999999999999999999999999852
Q ss_pred HHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccc
Q 037612 268 FAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQM 347 (663)
Q Consensus 268 i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~ 347 (663)
.++++.|+.+|.+.
T Consensus 80 ---~~~~~~L~~~l~~~--------------------------------------------------------------- 93 (211)
T 3ltm_A 80 ---ERAVEPLIKALKDE--------------------------------------------------------------- 93 (211)
T ss_dssp ---GGGHHHHHHHTTCS---------------------------------------------------------------
T ss_pred ---HHHHHHHHHHHcCC---------------------------------------------------------------
Confidence 24667777766422
Q ss_pred hhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHH
Q 037612 348 HNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARAL 427 (663)
Q Consensus 348 ~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL 427 (663)
|+ .++..|+.+|
T Consensus 94 ----------------------------------------------------------------~~----~vr~~a~~aL 105 (211)
T 3ltm_A 94 ----------------------------------------------------------------DG----WVRQSAAVAL 105 (211)
T ss_dssp ----------------------------------------------------------------SH----HHHHHHHHHH
T ss_pred ----------------------------------------------------------------CH----HHHHHHHHHH
Confidence 11 2466778888
Q ss_pred HHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhh
Q 037612 428 WHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEK 507 (663)
Q Consensus 428 ~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~ 507 (663)
+++.. ..+++.|..+|++.++.|+..++++|.++.. ...++.|.+++++
T Consensus 106 ~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------------------~~~~~~L~~~l~d 154 (211)
T 3ltm_A 106 GQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------------------ERAVEPLIKALKD 154 (211)
T ss_dssp HHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------------------GGGHHHHHHHTTC
T ss_pred HHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHcC
Confidence 77642 3578899999999999999999999987731 1256788899988
Q ss_pred cCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccC
Q 037612 508 ADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACS 563 (663)
Q Consensus 508 ~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~ 563 (663)
.++.++..++.+|+.+.. ..+++.|..+|++.++.|+..|..+|.++...
T Consensus 155 ~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 155 EDGWVRQSAADALGEIGG------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp SSHHHHHHHHHHHHHHCS------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHhCc------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 889999999999998853 45799999999999999999999999999744
No 44
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.26 E-value=2.2e-10 Score=111.13 Aligned_cols=185 Identities=22% Similarity=0.217 Sum_probs=151.1
Q ss_pred cCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHH
Q 037612 188 EGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDL 267 (663)
Q Consensus 188 ~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~ 267 (663)
.+..+.++++|+++++..+..|+++|..+.. .++++.|+++|.++++.++..++++|+.+..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 4678999999999999999999999998764 3689999999999999999999999998853
Q ss_pred HHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccc
Q 037612 268 FAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQM 347 (663)
Q Consensus 268 i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~ 347 (663)
..+++.|+.+|.+.
T Consensus 75 ---~~~~~~L~~~l~d~--------------------------------------------------------------- 88 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDE--------------------------------------------------------------- 88 (201)
T ss_dssp ---GGGHHHHHHHTTCS---------------------------------------------------------------
T ss_pred ---HHHHHHHHHHHcCC---------------------------------------------------------------
Confidence 14667777766421
Q ss_pred hhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHH
Q 037612 348 HNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARAL 427 (663)
Q Consensus 348 ~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL 427 (663)
|+ .++..|+++|
T Consensus 89 ----------------------------------------------------------------~~----~vr~~a~~aL 100 (201)
T 3ltj_A 89 ----------------------------------------------------------------DG----WVRQSAAVAL 100 (201)
T ss_dssp ----------------------------------------------------------------SH----HHHHHHHHHH
T ss_pred ----------------------------------------------------------------CH----HHHHHHHHHH
Confidence 11 2466788888
Q ss_pred HHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhh
Q 037612 428 WHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEK 507 (663)
Q Consensus 428 ~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~ 507 (663)
+++.. ..+++.|..+|++.++.|+..++++|..+.. ...++.|.+++.+
T Consensus 101 ~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------------------~~~~~~L~~~l~d 149 (201)
T 3ltj_A 101 GQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------------------ERAVEPLIKALKD 149 (201)
T ss_dssp HHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------------------GGGHHHHHHHTTC
T ss_pred HHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------------------HHHHHHHHHHHcC
Confidence 77642 3478889999999999999999999987731 1256788899998
Q ss_pred cCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcc
Q 037612 508 ADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFA 561 (663)
Q Consensus 508 ~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la 561 (663)
.++.++..++.+|+.+.. ...++.|..+|++.++.|+..|..+|.++.
T Consensus 150 ~~~~vr~~A~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 150 EDGWVRQSAADALGEIGG------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp SSHHHHHHHHHHHHHHCS------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCc------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 888999999999998842 357999999999999999999999999884
No 45
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.25 E-value=7.5e-10 Score=123.38 Aligned_cols=335 Identities=13% Similarity=0.083 Sum_probs=222.9
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCC--CcchHHHHHc
Q 037612 152 VAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRD--PESVEHMIHS 229 (663)
Q Consensus 152 i~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~--~~~~~~iv~a 229 (663)
...++. .+...|..|+.+|+.++...+. .......+|.|+.+++..++.++..|+.+|..++.. ++.+....-.
T Consensus 248 ~~~~~d-~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 323 (588)
T 1b3u_A 248 RQAAED-KSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 323 (588)
T ss_dssp HHHHTC-SSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHH
T ss_pred HHHccC-CCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHH
Confidence 345566 7788899999999988753111 122345689999999988899999999999999853 2322223345
Q ss_pred CchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhc
Q 037612 230 GVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASN 309 (663)
Q Consensus 230 GaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~ 309 (663)
..+|.+.+++++.++.++..++++|..++..-+. . ......+|.|..+|+.+.
T Consensus 324 ~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~-~~~~~l~p~l~~~l~d~~------------------------ 376 (588)
T 1b3u_A 324 QILPCIKELVSDANQHVKSALASVIMGLSPILGK--D-NTIEHLLPLFLAQLKDEC------------------------ 376 (588)
T ss_dssp THHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--H-HHHHHTHHHHHHHHTCSC------------------------
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH--h-HHHHHHHHHHHHHhCCCc------------------------
Confidence 6789999999999999999999999999852111 1 112235566666665321
Q ss_pred ccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcccccc
Q 037612 310 KTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQN 389 (663)
Q Consensus 310 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~ 389 (663)
T Consensus 377 -------------------------------------------------------------------------------- 376 (588)
T 1b3u_A 377 -------------------------------------------------------------------------------- 376 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHH
Q 037612 390 HQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMAL 469 (663)
Q Consensus 390 ~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL 469 (663)
+ .++..|..+|..+....... ......++.|..+++..+..++..++.+|
T Consensus 377 -----------------------~----~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l 426 (588)
T 1b3u_A 377 -----------------------P----EVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYM 426 (588)
T ss_dssp -----------------------H----HHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred -----------------------h----HHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 0 11222223333322211000 01123466777777777888999999998
Q ss_pred HHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHh--hccHHHHHHhcccCCH
Q 037612 470 MEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATE--TRMIVPLVKLLDEREA 547 (663)
Q Consensus 470 ~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e--~~~I~pLV~LL~~~~~ 547 (663)
..++..-+. ..|. ..+++.+++++.+.+..++..++.+++.++..+.... ..++|.|++++++.+.
T Consensus 427 ~~l~~~~~~------~~~~------~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~ 494 (588)
T 1b3u_A 427 PLLAGQLGV------EFFD------EKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNY 494 (588)
T ss_dssp HHHHHHHCG------GGCC------HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCH
T ss_pred HHHHHHcCH------HHHH------HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCH
Confidence 887643221 1111 2467778888887778899999999999988776532 3689999999988999
Q ss_pred HHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCChHHHHhccchhhhhh
Q 037612 548 EVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVLEW 627 (663)
Q Consensus 548 ~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~~~~i~~~~vl~~L~~ 627 (663)
.++..++++++.++.. ......-..-++.|++++..+++.++..++.+|+.++...+. ......++|.|..
T Consensus 495 ~~R~~a~~~l~~l~~~-------~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~~~p~l~~ 565 (588)
T 1b3u_A 495 LHRMTTLFCINVLSEV-------CGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN--STLQSEVKPILEK 565 (588)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch--hhhHHHHHHHHHH
Confidence 9999999999998621 011123345778888999888888888899999999766553 2333566677653
Q ss_pred ccccccccccCCcHHHHHHHHHHHH
Q 037612 628 TSKQSHMTQDETVDPLLQDAKSRLE 652 (663)
Q Consensus 628 ~~~~~~~~q~~~~~~l~~~a~~~le 652 (663)
. ..-.++.++..+++|+..++
T Consensus 566 l----~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 566 L----TQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp H----TTCSSHHHHHHHHHHHHHTT
T ss_pred H----cCCCchhHHHHHHHHHHHhh
Confidence 1 11235577778888877654
No 46
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.25 E-value=7.5e-10 Score=126.14 Aligned_cols=320 Identities=15% Similarity=0.132 Sum_probs=204.6
Q ss_pred hHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCc-c
Q 037612 144 ILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPE-S 222 (663)
Q Consensus 144 i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~-~ 222 (663)
...++-.+...|.. .+...|..|+.+|..+...+++ .+.+.+.+|.|.++|.+.++.++..|+++|..++.+.. .
T Consensus 119 ~~~l~~~l~~~L~d-~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~ 194 (591)
T 2vgl_B 119 TEYLCEPLRKCLKD-EDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNS 194 (591)
T ss_dssp HHHHHHHHHHHSSC-SCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSC
T ss_pred HHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCc
Confidence 34445556778888 9999999999999999876543 33345789999999998899999999999999997543 2
Q ss_pred hHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHH
Q 037612 223 VEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIH 302 (663)
Q Consensus 223 ~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~ 302 (663)
.......+.++.|++.|.+.++-.|.....+|.+++..++... ...++.+..+|++.
T Consensus 195 ~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~------------------ 251 (591)
T 2vgl_B 195 NLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHA------------------ 251 (591)
T ss_dssp CSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSS------------------
T ss_pred cchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCC------------------
Confidence 1111223456777877777777777777777777764332211 11233333333211
Q ss_pred HHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCC
Q 037612 303 AVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQ 382 (663)
Q Consensus 303 ~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~ 382 (663)
T Consensus 252 -------------------------------------------------------------------------------- 251 (591)
T 2vgl_B 252 -------------------------------------------------------------------------------- 251 (591)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcC---ChhhhHHHhhhccHHHHHHHhhcCCh
Q 037612 383 DNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKG---NSPICRSITESRALLCFAVLLEKGPE 459 (663)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~g---n~~~~~~I~esgal~~L~~LL~~~~~ 459 (663)
++. +...|++++..+... ++.....+ -.+..++|+.|+. .++
T Consensus 252 -----------------------------~~~----V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~~-~d~ 296 (591)
T 2vgl_B 252 -----------------------------NSA----VVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPLVTLLS-GEP 296 (591)
T ss_dssp -----------------------------TTH----HHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHHHHHTT-SCH
T ss_pred -----------------------------ChH----HHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHHHHHhc-CCc
Confidence 111 234455555554421 11111111 1233455555554 566
Q ss_pred hHHHHHHHHHHHHhhhh---------------hccHHHHhhhcC-----CCCchhHhHHHHHHHHhhhcCcchhhHHHHH
Q 037612 460 DVQYNSAMALMEITAVA---------------EKDAELRRSAFK-----PNAPACKAVVDQLFRIIEKADSDLLIPCIKA 519 (663)
Q Consensus 460 ~vq~~aa~AL~~i~a~a---------------~~~~~~rr~a~~-----~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~a 519 (663)
++|+-+..+|..|.... .++..+|+.++. .+..-...+++.|...+++.|++++..++.+
T Consensus 297 ~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~a 376 (591)
T 2vgl_B 297 EVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRA 376 (591)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 77777777776665320 112334443322 1222235577888888888889999999999
Q ss_pred HHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhc-CChhHHHH
Q 037612 520 VGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYF-GEQIVQLS 598 (663)
Q Consensus 520 Lg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~-~~~~~q~~ 598 (663)
|+.++..|.......++.|+++|+.....+..++..++.++..... +. ...+++.|+..+.. .++.+...
T Consensus 377 I~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p----~~-----~~~~v~~L~~~l~~~~~~~~~~~ 447 (591)
T 2vgl_B 377 IGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYP----NK-----YESIIATLCENLDSLDEPDARAA 447 (591)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSC----SS-----CCTTHHHHHHTTTTCCSHHHHHH
T ss_pred HHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCc----ch-----HHHHHHHHHHHHHhccCHHHHHH
Confidence 9999999876667899999999999999999999999988853211 10 24567788887763 45555556
Q ss_pred HHHHHHHHhcCCCChH
Q 037612 599 ALVLLCYIALHVPDSE 614 (663)
Q Consensus 599 Al~~L~~la~~~~~~~ 614 (663)
++|+|+-.+.+.++..
T Consensus 448 ~~wilGey~~~~~~~~ 463 (591)
T 2vgl_B 448 MIWIVGEYAERIDNAD 463 (591)
T ss_dssp HHHHHHTTCTTCTTHH
T ss_pred HHHHHHcccccccCHH
Confidence 7777776655554433
No 47
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.25 E-value=1.4e-10 Score=136.98 Aligned_cols=314 Identities=13% Similarity=0.077 Sum_probs=202.5
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHH-H---HhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcc
Q 037612 147 LIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKL-I---IEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPES 222 (663)
Q Consensus 147 ~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~-I---ve~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~ 222 (663)
++-.++..+++ ++...|+.|..+|+.++.+.+..-.. . .-...+|+|++++++.++.++..|+++|.++......
T Consensus 129 ll~~L~~~l~~-~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~ 207 (852)
T 4fdd_A 129 LLPKLCSLLDS-EDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ 207 (852)
T ss_dssp HHHHHHHHHSC-SSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH
Confidence 45566888899 99999999999999998643321110 0 0124689999999988899999999999988754332
Q ss_pred hHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHH
Q 037612 223 VEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIH 302 (663)
Q Consensus 223 ~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~ 302 (663)
...-.-...++.|.+++.+++++++..++++|.+|+...++.-....+ +.++.++.++....
T Consensus 208 ~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~----------------- 269 (852)
T 4fdd_A 208 ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQD----------------- 269 (852)
T ss_dssp HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSS-----------------
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCc-----------------
Confidence 211112357889999999999999999999999999755443111111 24444444443211
Q ss_pred HHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCC
Q 037612 303 AVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQ 382 (663)
Q Consensus 303 ~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~ 382 (663)
T Consensus 270 -------------------------------------------------------------------------------- 269 (852)
T 4fdd_A 270 -------------------------------------------------------------------------------- 269 (852)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhh---hccHHHHHHHh-----
Q 037612 383 DNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITE---SRALLCFAVLL----- 454 (663)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~e---sgal~~L~~LL----- 454 (663)
+ .++..|+..+..++... .++.... ...++.+...+
T Consensus 270 ------------------------------~----~vr~~a~e~l~~l~~~~--~~~~~~~~~~~~l~p~ll~~l~~~e~ 313 (852)
T 4fdd_A 270 ------------------------------E----NVALEACEFWLTLAEQP--ICKDVLVRHLPKLIPVLVNGMKYSDI 313 (852)
T ss_dssp ------------------------------H----HHHHHHHHHHHHHTTST--THHHHHTTTHHHHHHHHHHHTSCCHH
T ss_pred ------------------------------H----HHHHHHHHHHHHHhcch--hHHHHHHHHHHHHHHHHHHHcCCcHh
Confidence 1 11233333333333211 1111111 11223333333
Q ss_pred -----hc------------CChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHH
Q 037612 455 -----EK------------GPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCI 517 (663)
Q Consensus 455 -----~~------------~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~ 517 (663)
+. ..-.+++.++.+|..++..... .....+++.+..++.+.+..++..++
T Consensus 314 d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~-------------~~~~~l~~~l~~~l~~~~~~~R~aa~ 380 (852)
T 4fdd_A 314 DIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD-------------ELLPHILPLLKELLFHHEWVVKESGI 380 (852)
T ss_dssp HHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG-------------GGHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH-------------HHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 11 1225788899999888654321 11234667777888888889999999
Q ss_pred HHHHHhhhchhhH----hhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCCh
Q 037612 518 KAVGNLARTFKAT----ETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQ 593 (663)
Q Consensus 518 ~aLg~La~~~~~~----e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~ 593 (663)
.+||+++...... -..++|.|+.+|++.++.|+..|+|+|++++..-. .......-.+-++.|+..|..+++
T Consensus 381 ~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~----~~~~~~~~~~ll~~L~~~L~d~~~ 456 (852)
T 4fdd_A 381 LVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV----SQPPDTYLKPLMTELLKRILDSNK 456 (852)
T ss_dssp HHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHH----HSCTTTTHHHHHHHHHHHHTCSSH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHhCCCH
Confidence 9999999865432 13579999999999999999999999999974210 000000112456788888888888
Q ss_pred hHHHHHHHHHHHHhcCCCC
Q 037612 594 IVQLSALVLLCYIALHVPD 612 (663)
Q Consensus 594 ~~q~~Al~~L~~la~~~~~ 612 (663)
.+|..|+.+|.+++.+.+.
T Consensus 457 ~vr~~a~~aL~~l~~~~~~ 475 (852)
T 4fdd_A 457 RVQEAACSAFATLEEEACT 475 (852)
T ss_dssp HHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHhhH
Confidence 8999999999999765543
No 48
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.23 E-value=3.8e-10 Score=110.37 Aligned_cols=141 Identities=22% Similarity=0.222 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHH
Q 037612 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVV 498 (663)
Q Consensus 419 lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv 498 (663)
++..|+.+|+++.. ..+++.|..+|++.++.++..++++|..+.. ...+
T Consensus 66 vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------------------~~~~ 114 (211)
T 3ltm_A 66 VRRAAADALGQIGD-----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--------------------ERAV 114 (211)
T ss_dssp HHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------------------GGGH
T ss_pred HHHHHHHHHHhhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------------------HHHH
Confidence 36677788877642 4578899999999999999999999987731 1256
Q ss_pred HHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHc
Q 037612 499 DQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISA 578 (663)
Q Consensus 499 ~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ 578 (663)
+.|++++.+.++.++..++.+||.+.. ...+++|+.+|++.++.|+..|+++|.++.. .
T Consensus 115 ~~L~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------------~ 173 (211)
T 3ltm_A 115 EPLIKALKDEDWFVRIAAAFALGEIGD------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---------------E 173 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---------------H
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------------h
Confidence 789999998899999999999999853 3589999999999999999999999999942 2
Q ss_pred CCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCC
Q 037612 579 GGAKHLVQLVYFGEQIVQLSALVLLCYIALHVP 611 (663)
Q Consensus 579 ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~ 611 (663)
..++.|..++..+++.++..|..+|+++..+.+
T Consensus 174 ~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 174 RVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 257789999999999899999999988854443
No 49
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.18 E-value=1.4e-09 Score=121.19 Aligned_cols=206 Identities=13% Similarity=0.097 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHH
Q 037612 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVV 498 (663)
Q Consensus 419 lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv 498 (663)
++..++.+|..++..-.. .......++.|..+++..+++|+..++.+|..+....... .. ...++
T Consensus 340 vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-~~-----------~~~~l 404 (588)
T 1b3u_A 340 VKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR-QL-----------SQSLL 404 (588)
T ss_dssp HHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH-HH-----------HHHHH
T ss_pred HHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH-HH-----------HHHHH
Confidence 467777777777642111 1123346778889999989999999999998886443211 11 13467
Q ss_pred HHHHHHhhhcCcchhhHHHHHHHHhhhchhhH--hhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHH
Q 037612 499 DQLFRIIEKADSDLLIPCIKAVGNLARTFKAT--ETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAII 576 (663)
Q Consensus 499 ~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~--e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv 576 (663)
+.|..++++.+..++..++.+|+.++..+... ...++|.++.+|.+.+..|++.|+.+|++++..- ..+ ..
T Consensus 405 p~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~---~~~----~~ 477 (588)
T 1b3u_A 405 PAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF---GKE----WA 477 (588)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH---CHH----HH
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh---Cch----hH
Confidence 77888888777788999999999998865542 1357899999999999999999999999997321 111 11
Q ss_pred HcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCChHHHHhccchhhhhhccccccccccCCcHHHHHHHHHHHH
Q 037612 577 SAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDSEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLE 652 (663)
Q Consensus 577 ~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~~~~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~le 652 (663)
-..-++.|+.++..++..++..++.++..++...+. +.....+++.|....+. .++.++.-+.+++..+-
T Consensus 478 ~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~l~d----~~~~Vr~~a~~~l~~l~ 547 (588)
T 1b3u_A 478 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ--DITTKHMLPTVLRMAGD----PVANVRFNVAKSLQKIG 547 (588)
T ss_dssp HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH--HHHHHHTHHHHHHGGGC----SCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHhhCCC----CCchHHHHHHHHHHHHH
Confidence 234677788888777776777799999888654332 12234566666522111 12356666666666654
No 50
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.16 E-value=1.3e-09 Score=105.64 Aligned_cols=136 Identities=23% Similarity=0.245 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHH
Q 037612 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVV 498 (663)
Q Consensus 419 lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv 498 (663)
++..|+.+|+.+.. ..+++.|..+|.+.++.++..++++|.++.. ...+
T Consensus 61 vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------------------~~~~ 109 (201)
T 3ltj_A 61 VRRAAADALGQIGD-----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--------------------ERAV 109 (201)
T ss_dssp HHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------------------GGGH
T ss_pred HHHHHHHHHHhhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------------------HHHH
Confidence 35667778876542 3578899999999999999999999987631 1256
Q ss_pred HHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHc
Q 037612 499 DQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISA 578 (663)
Q Consensus 499 ~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ 578 (663)
+.|++++.+.++.++..++.+||.+.. ...++.|+.+|++.++.|+..|+++|+++.. .
T Consensus 110 ~~L~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~---------------~ 168 (201)
T 3ltj_A 110 EPLIKALKDEDWFVRIAAAFALGEIGD------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---------------E 168 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHTC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---------------H
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCC------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------------h
Confidence 788899998889999999999999863 4689999999999999999999999999941 1
Q ss_pred CCHHHHHHHHhcCChhHHHHHHHHHHHH
Q 037612 579 GGAKHLVQLVYFGEQIVQLSALVLLCYI 606 (663)
Q Consensus 579 ggi~~Lv~LL~~~~~~~q~~Al~~L~~l 606 (663)
..++.|..++..+++.++..|..+|..+
T Consensus 169 ~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 169 RVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 2678899999999998888899999766
No 51
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.10 E-value=3.9e-08 Score=112.73 Aligned_cols=305 Identities=16% Similarity=0.145 Sum_probs=222.9
Q ss_pred hHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC-CCcc
Q 037612 144 ILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR-DPES 222 (663)
Q Consensus 144 i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~-~~~~ 222 (663)
+...+..+..-|++ .+...|..|..+|+++.. ++ +. ...+|++.++|++.++.+++.|+.|+.+|.. +++.
T Consensus 105 ~~l~in~l~kDL~~-~n~~vr~lAL~~L~~i~~--~~----~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~ 176 (618)
T 1w63_A 105 HLLMTNCIKNDLNH-STQFVQGLALCTLGCMGS--SE----MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL 176 (618)
T ss_dssp HHHHHHHHHHHHSC-SSSHHHHHHHHHHHHHCC--HH----HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHhcCC-CCHhHHHHHHHHHHhcCC--HH----HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH
Confidence 34555667778899 999999999999999973 32 22 3578999999999999999999999999995 5543
Q ss_pred hHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHH
Q 037612 223 VEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIH 302 (663)
Q Consensus 223 ~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~ 302 (663)
.. +.++.+.++|.+.++.|+..|+++|..++..+++....+. ..+|.|+.+|..-
T Consensus 177 v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~------------------ 231 (618)
T 1w63_A 177 ME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNL------------------ 231 (618)
T ss_dssp GG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHH------------------
T ss_pred HH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHH------------------
Confidence 32 6888999999999999999999999999976655433332 5788888877521
Q ss_pred HHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCC
Q 037612 303 AVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQ 382 (663)
Q Consensus 303 ~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~ 382 (663)
+. ...+ .++..+|.
T Consensus 232 --~~--~~~~--------------------------------------------------------------~~~~~~~~ 245 (618)
T 1w63_A 232 --IM--SGYS--------------------------------------------------------------PEHDVSGI 245 (618)
T ss_dssp --HH--SCCC--------------------------------------------------------------TTTCSSSS
T ss_pred --Hc--CCCC--------------------------------------------------------------ccccccCC
Confidence 00 0000 00111111
Q ss_pred CccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhc------
Q 037612 383 DNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEK------ 456 (663)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~------ 456 (663)
.+|- ++....++|..++..++... ...+..|..+++.
T Consensus 246 ----------------------------~~~~----~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~~~~ 288 (618)
T 1w63_A 246 ----------------------------SDPF----LQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNTETSKN 288 (618)
T ss_dssp ----------------------------SCHH----HHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSCCSST
T ss_pred ----------------------------CCCh----HHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhccccccc
Confidence 1332 46667888888887665432 2345566666642
Q ss_pred CChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHH
Q 037612 457 GPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIV 536 (663)
Q Consensus 457 ~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~ 536 (663)
....+.+.|+.+++.+.. +++++. .+++.|.+++.+.+++++..+..+|+.++...+..=....+
T Consensus 289 ~~~aV~~ea~~~i~~l~~----~~~l~~-----------~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~ 353 (618)
T 1w63_A 289 VGNAILYETVLTIMDIKS----ESGLRV-----------LAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRS 353 (618)
T ss_dssp HHHHHHHHHHHHHHHSCC----CHHHHH-----------HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHH
T ss_pred hHHHHHHHHHHHHHhcCC----CHHHHH-----------HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 234899999999988742 233332 35678999999999999999999999998765543335678
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 037612 537 PLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHV 610 (663)
Q Consensus 537 pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~ 610 (663)
.++.+|.+.+..+++.|...|.++++..| ...| ++.|...+...+...+..++.+++.++.+-
T Consensus 354 ~i~~~l~d~d~~Ir~~alelL~~l~~~~n------v~~i-----v~eL~~~l~~~d~e~r~~~v~~I~~la~k~ 416 (618)
T 1w63_A 354 TIVDCLKDLDVSIKRRAMELSFALVNGNN------IRGM-----MKELLYFLDSCEPEFKADCASGIFLAAEKY 416 (618)
T ss_dssp HHHHGGGSSCHHHHHHHHHHHHHHCCSSS------THHH-----HHHHHHHHHHCCHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHccCCChhHHHHHHHHHHHHccccc------HHHH-----HHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999986544 3344 367888887777778888999999998765
No 52
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.08 E-value=1e-09 Score=125.12 Aligned_cols=303 Identities=15% Similarity=0.138 Sum_probs=196.9
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC-CCcchHH
Q 037612 147 LIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR-DPESVEH 225 (663)
Q Consensus 147 ~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~-~~~~~~~ 225 (663)
.+..+...|+. .+...|..|..+|+++. +++... ..+|++.++|.+.++.+++.|+.||.++.. +++.
T Consensus 87 ~~n~l~kdL~~-~n~~ir~~AL~~L~~i~--~~~~~~-----~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~--- 155 (591)
T 2vgl_B 87 AVNSFVKDCED-PNPLIRALAVRTMGCIR--VDKITE-----YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM--- 155 (591)
T ss_dssp THHHHGGGSSS-SSHHHHHHHHHHHHTCC--SGGGHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---
T ss_pred HHHHHHHHcCC-CCHHHHHHHHHHHHcCC--hHHHHH-----HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---
Confidence 34445567788 89999999999999885 233232 347899999999899999999999999985 4442
Q ss_pred HHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHH
Q 037612 226 MIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVV 305 (663)
Q Consensus 226 iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv 305 (663)
+.+.+.++.|.++|.+.++.|+..|+++|..++..+++.+..-...+.++.|+..|...+ .|
T Consensus 156 ~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~-----~~------------- 217 (591)
T 2vgl_B 156 VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECT-----EW------------- 217 (591)
T ss_dssp HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCC-----HH-------------
T ss_pred cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCC-----ch-------------
Confidence 334688999999999999999999999999999766532100001122344444443211 01
Q ss_pred HhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcc
Q 037612 306 VASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNN 385 (663)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~ 385 (663)
T Consensus 218 -------------------------------------------------------------------------------- 217 (591)
T 2vgl_B 218 -------------------------------------------------------------------------------- 217 (591)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHH
Q 037612 386 VKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNS 465 (663)
Q Consensus 386 ~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~a 465 (663)
.+....++|.+++..++.. ....+..+..+|++.++.|+++|
T Consensus 218 ---------------------------------~q~~il~~l~~l~~~~~~~-----~~~~l~~l~~~l~~~~~~V~~ea 259 (591)
T 2vgl_B 218 ---------------------------------GQIFILDCLSNYNPKDDRE-----AQSICERVTPRLSHANSAVVLSA 259 (591)
T ss_dssp ---------------------------------HHHHHHHHHHTSCCCSHHH-----HHHHHHHHTTCSCSSTTHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHhCCCChHH-----HHHHHHHHHHHHcCCChHHHHHH
Confidence 0111122222222111111 12346677778888899999999
Q ss_pred HHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhh----------------
Q 037612 466 AMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKA---------------- 529 (663)
Q Consensus 466 a~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~---------------- 529 (663)
+++++++...-.++++..+. ....+...|+.++. .+++++..++.+|+.+....+.
T Consensus 260 ~~~i~~l~~~~~~~~~~~~~-------~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~ 331 (591)
T 2vgl_B 260 VKVLMKFLELLPKDSDYYNM-------LLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDP 331 (591)
T ss_dssp HHHHHHSCCSCCBTTBSHHH-------HHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSC
T ss_pred HHHHHHHhhccCCCHHHHHH-------HHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCCh
Confidence 99999875321112221110 11234556666654 6788999999999888752110
Q ss_pred ----H-----------h---hccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcC
Q 037612 530 ----T-----------E---TRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFG 591 (663)
Q Consensus 530 ----~-----------e---~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~ 591 (663)
. + ..+++.|...+.+.+.++++++++++++++..- +... ...++.|++++...
T Consensus 332 ~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~----~~~~-----~~~v~~Ll~ll~~~ 402 (591)
T 2vgl_B 332 IYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKV----EQSA-----ERCVSTLLDLIQTK 402 (591)
T ss_dssp HHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC----HHHH-----HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC----hhHH-----HHHHHHHHHHHccc
Confidence 0 0 124666667777889999999999999997431 2222 23568999999887
Q ss_pred ChhHHHHHHHHHHHHhcCCCCh
Q 037612 592 EQIVQLSALVLLCYIALHVPDS 613 (663)
Q Consensus 592 ~~~~q~~Al~~L~~la~~~~~~ 613 (663)
...+...++..+..+..+.++.
T Consensus 403 ~~~v~~e~i~~l~~ii~~~p~~ 424 (591)
T 2vgl_B 403 VNYVVQEAIVVIRDIFRKYPNK 424 (591)
T ss_dssp CHHHHHHHHHHHHHHHHHSCSS
T ss_pred chHHHHHHHHHHHHHHHHCcch
Confidence 6666666888898887766653
No 53
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.02 E-value=1.1e-08 Score=120.79 Aligned_cols=315 Identities=14% Similarity=0.071 Sum_probs=209.2
Q ss_pred hHhHHH-HHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCC-Cc
Q 037612 144 ILCLIW-EQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRD-PE 221 (663)
Q Consensus 144 i~~~v~-~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~-~~ 221 (663)
.+..++ .++..|.. .+...|..++.++..+++.+... . -.+.+|.|++++.++++..++.|..+|+.++.+ ++
T Consensus 87 ~~~~ik~~ll~~l~~-~~~~vr~~~a~~i~~ia~~~~~~-~---wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~ 161 (852)
T 4fdd_A 87 VTDFIKSECLNNIGD-SSPLIRATVGILITTIASKGELQ-N---WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAE 161 (852)
T ss_dssp HHHHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHHHTTTT-T---CTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhcCcc-c---cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHH
Confidence 334443 34556777 88899999999999998753210 0 135699999999999999999999999999953 22
Q ss_pred chHH-H---HHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhh
Q 037612 222 SVEH-M---IHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSK 297 (663)
Q Consensus 222 ~~~~-i---v~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~ 297 (663)
.-.. . .-...+|.|++++++.+++++..|+++|.++....++..... -...++.|+.++..
T Consensus 162 ~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~-~~~~l~~l~~~~~d-------------- 226 (852)
T 4fdd_A 162 ILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH-IDSFIENLFALAGD-------------- 226 (852)
T ss_dssp HHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS-HHHHHHHHHHHHTC--------------
T ss_pred HhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHcCC--------------
Confidence 1110 0 013478889999999999999999999988775432110000 00111111111110
Q ss_pred hhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccc
Q 037612 298 ATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDV 377 (663)
Q Consensus 298 ~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~ 377 (663)
T Consensus 227 -------------------------------------------------------------------------------- 226 (852)
T 4fdd_A 227 -------------------------------------------------------------------------------- 226 (852)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcC
Q 037612 378 KSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKG 457 (663)
Q Consensus 378 ~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~ 457 (663)
+|+ .++..|+.+|..++...+..-....+ +.+..+..++.+.
T Consensus 227 ---------------------------------~~~----~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~ 268 (852)
T 4fdd_A 227 ---------------------------------EEP----EVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQ 268 (852)
T ss_dssp ---------------------------------CCH----HHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCS
T ss_pred ---------------------------------CCH----HHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCC
Confidence 122 34778888898888765544332222 3566777888888
Q ss_pred ChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHh-----------hh--c---------CcchhhH
Q 037612 458 PEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRII-----------EK--A---------DSDLLIP 515 (663)
Q Consensus 458 ~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll-----------~~--~---------~~~l~~~ 515 (663)
+++++..|+..+..++.... .++ .++ |....+++.|+..+ .+ . +-.+...
T Consensus 269 ~~~vr~~a~e~l~~l~~~~~----~~~-~~~---~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~ 340 (852)
T 4fdd_A 269 DENVALEACEFWLTLAEQPI----CKD-VLV---RHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKC 340 (852)
T ss_dssp SHHHHHHHHHHHHHHTTSTT----HHH-HHT---TTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHH
T ss_pred cHHHHHHHHHHHHHHhcchh----HHH-HHH---HHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHH
Confidence 89999999999988764321 122 122 34456677777766 22 1 1135778
Q ss_pred HHHHHHHhhhchhhH-hhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChh
Q 037612 516 CIKAVGNLARTFKAT-ETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQI 594 (663)
Q Consensus 516 a~~aLg~La~~~~~~-e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~ 594 (663)
++.+|+.|+..+... -..++|.|..+|++.+..++..|+++|++++.+. .+.... .-.+.++.|+.++..+++.
T Consensus 341 a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~----~~~~~~-~l~~~l~~l~~~l~d~~~~ 415 (852)
T 4fdd_A 341 SAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGC----MQGMIP-YLPELIPHLIQCLSDKKAL 415 (852)
T ss_dssp HHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTT----HHHHGG-GHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc----hHHHHH-HHHHHHHHHHHHcCCCCHH
Confidence 999999999877632 1246777777888899999999999999998542 222221 1245688999999999988
Q ss_pred HHHHHHHHHHHHhcC
Q 037612 595 VQLSALVLLCYIALH 609 (663)
Q Consensus 595 ~q~~Al~~L~~la~~ 609 (663)
++..|+++|.+++..
T Consensus 416 Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 416 VRSITCWTLSRYAHW 430 (852)
T ss_dssp HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888899999988753
No 54
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.99 E-value=9.4e-09 Score=119.33 Aligned_cols=221 Identities=13% Similarity=0.145 Sum_probs=155.3
Q ss_pred hcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHH-HhhccCChhHHHHHHHHHHHHhcC-ChhH
Q 037612 187 EEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFA-KILKEGPMKVQAVVAWAVSELAGN-YPKC 264 (663)
Q Consensus 187 e~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv-~lL~s~~~~vq~~Aa~aL~nLA~~-~~~~ 264 (663)
....|.||++.|+++++..|..|++||.||+.+++.++.+...|+|++++ .+|.+.+.+|+..|+++|.||+.. +++.
T Consensus 32 ~~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 32 REDKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HHHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred chhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 34578899999999999999999999999999999999999999998765 568888999999999999999964 5788
Q ss_pred HHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCC
Q 037612 265 QDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTP 344 (663)
Q Consensus 265 r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~ 344 (663)
...+.+.|++++|..+|+... . ++.+ ... .. .
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~---~----------~~~~----~~~---------~~-----~----------------- 143 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVL---E----------TLTT----SEP---------PF-----S----------------- 143 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHH---H----------HHHC----BTT---------BG-----G-----------------
T ss_pred HHHHHHcChHHHHHHHHHhhH---H----------HHhh----hcc---------cc-----c-----------------
Confidence 899999999999999997421 0 0000 000 00 0
Q ss_pred ccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHH
Q 037612 345 SQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAA 424 (663)
Q Consensus 345 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa 424 (663)
.+.. +...........+.
T Consensus 144 -~~~~-------------------------------------------------------------~~~~~~~~~~~~~l 161 (684)
T 4gmo_A 144 -KLLK-------------------------------------------------------------AQQRLVWDITGSLL 161 (684)
T ss_dssp -GSCH-------------------------------------------------------------HHHHHHHHHHHHHH
T ss_pred -cccH-------------------------------------------------------------HHHHHHHHHHHHHH
Confidence 0000 00000012345577
Q ss_pred HHHHHHhcCChhhhHHHhhhccHHHHHHHhhcC---ChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHH
Q 037612 425 RALWHLAKGNSPICRSITESRALLCFAVLLEKG---PEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQL 501 (663)
Q Consensus 425 ~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~---~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL 501 (663)
.+||+||.++......|...++++.|+.+|... ..+++..++.+|+.++. +|+++.+. +..+ +. ..+...+
T Consensus 162 ~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~---dn~~~~~~-i~~~-~~-~~~~~~l 235 (684)
T 4gmo_A 162 VLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSE---DNLKVGQA-ITDD-QE-THVYDVL 235 (684)
T ss_dssp HHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHT---TCHHHHHH-HHTC-CS-SCHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhc---cCHHHHHH-HHhc-ch-HHHHHHH
Confidence 899999999999999999999999999998643 35899999999998864 45555543 2221 10 0122233
Q ss_pred HHHhhhcCcchhhHHHHHHHHhh
Q 037612 502 FRIIEKADSDLLIPCIKAVGNLA 524 (663)
Q Consensus 502 ~~ll~~~~~~l~~~a~~aLg~La 524 (663)
+. +.+.++..+..++..|.|+.
T Consensus 236 l~-~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 236 LK-LATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HH-HHHSSCTTHHHHHHHHHHHH
T ss_pred HH-HhcCCcHHHHHHHHHHHhHh
Confidence 33 33444555666777777764
No 55
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.98 E-value=2.4e-09 Score=124.30 Aligned_cols=129 Identities=14% Similarity=0.173 Sum_probs=107.3
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHH-hhccCChHHHHHHHHHHHHhcC--CCcchHHHHH
Q 037612 152 VAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLK-LVKEGKPEGQENAARAIGLLGR--DPESVEHMIH 228 (663)
Q Consensus 152 i~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~-LL~sg~~~~q~~Aa~AL~nLs~--~~~~~~~iv~ 228 (663)
+..|++ ++.+.|..|+++|.+|+. ++.+++.+..+|+|++++. +|...+..+++.|++||.||+. .++.+..+++
T Consensus 40 l~~L~S-~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~ 117 (684)
T 4gmo_A 40 LKDLKS-PDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYR 117 (684)
T ss_dssp HHHHSS-SCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHcCC-CCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHH
Confidence 667899 999999999999999996 5889999999999998765 6766789999999999999995 4677899999
Q ss_pred cCchHHHHHhhccCC---------------------hhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhc
Q 037612 229 SGVCLVFAKILKEGP---------------------MKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLA 282 (663)
Q Consensus 229 aGaIp~Lv~lL~s~~---------------------~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~ 282 (663)
.|++++|..+|++.. .++..++..+|.+|+..+.+....+...+.|+.|+.+|.
T Consensus 118 ~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 118 LDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp TTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred cChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 999999999996421 123445677888888777777778888888888888773
No 56
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.85 E-value=1.8e-07 Score=107.25 Aligned_cols=332 Identities=12% Similarity=0.110 Sum_probs=219.0
Q ss_pred hHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCC-cc
Q 037612 144 ILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDP-ES 222 (663)
Q Consensus 144 i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~-~~ 222 (663)
+..++..+...|.. .+...|..|+.+|..+...+++. + .+.++.|..+|...++.++..|+++|..++... +.
T Consensus 140 ~~~l~~~l~~~L~~-~~~~VRk~A~~al~~l~~~~p~~----v-~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~ 213 (618)
T 1w63_A 140 CRDLAGEVEKLLKT-SNSYLRKKAALCAVHVIRKVPEL----M-EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM 213 (618)
T ss_dssp HHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHHCGGG----G-GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHChHH----H-HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH
Confidence 34456667778888 99999999999999998765542 2 268899999999888999999999999999643 22
Q ss_pred hHHHHHcCchHHHHHhhcc---------------CChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccc
Q 037612 223 VEHMIHSGVCLVFAKILKE---------------GPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQ 287 (663)
Q Consensus 223 ~~~iv~aGaIp~Lv~lL~s---------------~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~ 287 (663)
...+ ...+|.|+++|++ .++-.|.....+|..++..+++... ..++.|-.++......
T Consensus 214 ~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~ 286 (618)
T 1w63_A 214 LAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETS 286 (618)
T ss_dssp HHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCS
T ss_pred HHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccc
Confidence 2222 2678999998864 3688899999999999977665432 3456666665422111
Q ss_pred hhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCccccc
Q 037612 288 EHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQ 367 (663)
Q Consensus 288 ~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 367 (663)
.|...++.. .+++++...... ..+...+. .
T Consensus 287 ~~~~~aV~~--ea~~~i~~l~~~-------------------------------------~~l~~~a~--~--------- 316 (618)
T 1w63_A 287 KNVGNAILY--ETVLTIMDIKSE-------------------------------------SGLRVLAI--N--------- 316 (618)
T ss_dssp STHHHHHHH--HHHHHHHHSCCC-------------------------------------HHHHHHHH--H---------
T ss_pred cchHHHHHH--HHHHHHHhcCCC-------------------------------------HHHHHHHH--H---------
Confidence 122222210 011211110000 00000000 0
Q ss_pred ccccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccH
Q 037612 368 GNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRAL 447 (663)
Q Consensus 368 ~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal 447 (663)
.+..++. ..|+. +|..|..+|..++..++.. + ....
T Consensus 317 -------------------------~L~~~L~----------~~d~~----vr~~aL~~L~~i~~~~p~~---~--~~~~ 352 (618)
T 1w63_A 317 -------------------------ILGRFLL----------NNDKN----IRYVALTSLLKTVQTDHNA---V--QRHR 352 (618)
T ss_dssp -------------------------HHHHHHT----------CSSTT----THHHHHHHHHHHHHHHHHH---H--GGGH
T ss_pred -------------------------HHHHHHh----------CCCCc----hHHHHHHHHHHHHhhCHHH---H--HHHH
Confidence 0111111 13454 4888999999888754322 1 2244
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhch
Q 037612 448 LCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTF 527 (663)
Q Consensus 448 ~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~ 527 (663)
..+...|...+.+++..+...|..++. ++| ...+++.|+..+.+.+++++..++.+||.+|..|
T Consensus 353 ~~i~~~l~d~d~~Ir~~alelL~~l~~--~~n--------------v~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~ 416 (618)
T 1w63_A 353 STIVDCLKDLDVSIKRRAMELSFALVN--GNN--------------IRGMMKELLYFLDSCEPEFKADCASGIFLAAEKY 416 (618)
T ss_dssp HHHHHGGGSSCHHHHHHHHHHHHHHCC--SSS--------------THHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHccCCChhHHHHHHHHHHHHcc--ccc--------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 567777888899999999999988853 222 1346788999999989999999999999999988
Q ss_pred hhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcC---ChhHHHHHHHHHH
Q 037612 528 KATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFG---EQIVQLSALVLLC 604 (663)
Q Consensus 528 ~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~---~~~~q~~Al~~L~ 604 (663)
...-...|+.|+++|+.....+..++..++..+.... ++.... .++.|+.++... ++..+ .++|+|+
T Consensus 417 ~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~----p~l~~~-----~v~~L~~~l~~~~~~~~~~~-~~~wilG 486 (618)
T 1w63_A 417 APSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNS----VEMHAY-----TVQRLYKAILGDYSQQPLVQ-VAAWCIG 486 (618)
T ss_dssp CCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHS----CSTHHH-----HHHHHHHHHHHCCSCSHHHH-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcC----hhHHHH-----HHHHHHHHHhcccccHHHHH-HHHHHHh
Confidence 6544568999999998887778888888888876432 222233 356789888852 44334 4788887
Q ss_pred HHhc
Q 037612 605 YIAL 608 (663)
Q Consensus 605 ~la~ 608 (663)
-.+.
T Consensus 487 Ey~~ 490 (618)
T 1w63_A 487 EYGD 490 (618)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 6653
No 57
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.83 E-value=6.5e-08 Score=104.32 Aligned_cols=316 Identities=12% Similarity=0.055 Sum_probs=197.5
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC--ChHHHHHHHHHHHHhcCC--CcchHHH
Q 037612 151 QVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEG--KPEGQENAARAIGLLGRD--PESVEHM 226 (663)
Q Consensus 151 li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg--~~~~q~~Aa~AL~nLs~~--~~~~~~i 226 (663)
++..|.. .+... ..++.+|..++........ -.+.+|.|+..+.++ ++..++.|..+|..|+.+ ++.-...
T Consensus 95 ll~~l~~-~~~~v-~~~~~~i~~ia~~~~~~~~---w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~ 169 (462)
T 1ibr_B 95 VLQTLGT-ETYRP-SSASQCVAGIACAEIPVNQ---WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK 169 (462)
T ss_dssp HHHHTTC-CCSSS-CSHHHHHHHHHHHHGGGTC---CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG
T ss_pred HHHHhCC-CCchh-hHHHHHHHHHHHHhccccc---cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH
Confidence 5666777 66666 7788889888865211000 136799999999998 889999999999999952 2211111
Q ss_pred HHcCchHHHHHhhccC--ChhHHHHHHHHHHHHhcCChhHHHHHHhC----CcHHHHHHHhccCccchhhhHHHhhhhhh
Q 037612 227 IHSGVCLVFAKILKEG--PMKVQAVVAWAVSELAGNYPKCQDLFAQH----NIIRLLVGHLAFETVQEHSKYAIVSKATS 300 (663)
Q Consensus 227 v~aGaIp~Lv~lL~s~--~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~----g~I~~LV~LL~sgt~~~~s~~~v~~~~~s 300 (663)
+ ...++.|++.|++. ++.++..|++++.++...-. ..+... -.++.|..++.+
T Consensus 170 ~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~----------------- 228 (462)
T 1ibr_B 170 S-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK---ANFDKESERHFIMQVVCEATQC----------------- 228 (462)
T ss_dssp H-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH---HHHTSHHHHHHHHHHHHHHTTC-----------------
T ss_pred H-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHhcCC-----------------
Confidence 1 24788899999887 78999999999999864211 000000 001111111000
Q ss_pred HHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCcccccc
Q 037612 301 IHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSN 380 (663)
Q Consensus 301 l~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~ 380 (663)
T Consensus 229 -------------------------------------------------------------------------------- 228 (462)
T 1ibr_B 229 -------------------------------------------------------------------------------- 228 (462)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChh
Q 037612 381 GQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPED 460 (663)
Q Consensus 381 g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~ 460 (663)
+|+ .++..++++|..++...+..-........++.+...++..+++
T Consensus 229 ------------------------------~~~----~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 274 (462)
T 1ibr_B 229 ------------------------------PDT----RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDE 274 (462)
T ss_dssp ------------------------------SSH----HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHH
T ss_pred ------------------------------CCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH
Confidence 122 2466677777777754332211111114455666677788899
Q ss_pred HHHHHHHHHHHHhhhhhccHHHHh-----------hhcCCCCchhHhHHHHHHHHhhhcC-------cchhhHHHHHHHH
Q 037612 461 VQYNSAMALMEITAVAEKDAELRR-----------SAFKPNAPACKAVVDQLFRIIEKAD-------SDLLIPCIKAVGN 522 (663)
Q Consensus 461 vq~~aa~AL~~i~a~a~~~~~~rr-----------~a~~~~~~a~~~vv~qL~~ll~~~~-------~~l~~~a~~aLg~ 522 (663)
++..+...+..++....+..+... ..++.-.+....+++.|++.+...+ ..+...++.+|+.
T Consensus 275 v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~ 354 (462)
T 1ibr_B 275 VALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLML 354 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHH
Confidence 999999998888644210000000 0000001122456677777775432 3577889999999
Q ss_pred hhhchhhH-hhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHH
Q 037612 523 LARTFKAT-ETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALV 601 (663)
Q Consensus 523 La~~~~~~-e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~ 601 (663)
|+..+... -..++|.+...|++.+..++..|..+|+.++.+.. .+...... ...+++|+.+|..+++.++..|++
T Consensus 355 l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~---~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~ 430 (462)
T 1ibr_B 355 LATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE---PSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAW 430 (462)
T ss_dssp HHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC---TTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCc---HHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99887631 12356777778889999999999999999985421 11111111 457889999999999989999999
Q ss_pred HHHHHhcCC
Q 037612 602 LLCYIALHV 610 (663)
Q Consensus 602 ~L~~la~~~ 610 (663)
+|+.++...
T Consensus 431 ~l~~~~~~~ 439 (462)
T 1ibr_B 431 TVGRICELL 439 (462)
T ss_dssp HHHHHHHHG
T ss_pred HHHHHHHhc
Confidence 999986443
No 58
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.80 E-value=4.4e-07 Score=105.93 Aligned_cols=316 Identities=16% Similarity=0.160 Sum_probs=199.8
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCCh-hhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcch--
Q 037612 147 LIWEQVAILYTAGSLEHKSDAAASLVSLARDND-RYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESV-- 223 (663)
Q Consensus 147 ~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~-~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~-- 223 (663)
++..+...|+. .+...|..|+.+|+.++.... ..-...+ ...+|.|++.++..++.++..++++|+.++..-...
T Consensus 370 l~~~l~~~l~~-~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 370 VLEFVEQNITA-DNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp HHHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHcCC-CChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC
Confidence 34445567778 889999999999999996532 2112222 247899999999888999999999999999531100
Q ss_pred HHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChh-----HHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhh
Q 037612 224 EHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPK-----CQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKA 298 (663)
Q Consensus 224 ~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~-----~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~ 298 (663)
..-.-...+|.|++.|++. +.++..++++|.+++....+ ....+ ...++.|+.++....
T Consensus 448 ~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d------------- 511 (861)
T 2bpt_A 448 PQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRID------------- 511 (861)
T ss_dssp TTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSC-------------
T ss_pred CHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcC-------------
Confidence 0001234688899999876 89999999999999853110 00000 011222222221100
Q ss_pred hhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCcccc
Q 037612 299 TSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVK 378 (663)
Q Consensus 299 ~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~ 378 (663)
T Consensus 512 -------------------------------------------------------------------------------- 511 (861)
T 2bpt_A 512 -------------------------------------------------------------------------------- 511 (861)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcC-
Q 037612 379 SNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKG- 457 (663)
Q Consensus 379 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~- 457 (663)
.++ .++..|..+|..++......+..... ..++.+...|...
T Consensus 512 --------------------------------~~~----~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~ 554 (861)
T 2bpt_A 512 --------------------------------NEF----NARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTM 554 (861)
T ss_dssp --------------------------------CGG----GHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHT
T ss_pred --------------------------------cch----HHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHH
Confidence 001 13556667777766644433322222 2344455444421
Q ss_pred --------------ChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCc-chhhHHHHHHHH
Q 037612 458 --------------PEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADS-DLLIPCIKAVGN 522 (663)
Q Consensus 458 --------------~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~-~l~~~a~~aLg~ 522 (663)
..+++..++.+|..|....+. + |. |....+++.++.+++..+. .++..++.+++.
T Consensus 555 ~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~-----~~---~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~ 624 (861)
T 2bpt_A 555 SVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS--S-----VE---PVADMLMGLFFRLLEKKDSAFIEDDVFYAISA 624 (861)
T ss_dssp TSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG--G-----TG---GGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHH
T ss_pred hhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh--h-----hH---HHHHHHHHHHHHHHccCCCCcHHHHHHHHHHH
Confidence 346788899999988755432 1 11 3445677888888888766 889999999999
Q ss_pred hhhchhhH----hhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCC--hhHH
Q 037612 523 LARTFKAT----ETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGE--QIVQ 596 (663)
Q Consensus 523 La~~~~~~----e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~--~~~q 596 (663)
++..+... -..++|.|+..|+..+++++..|..+++.++..- .++..-. -..-++.|+..+..++ +.++
T Consensus 625 l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~----~~~~~~~-~~~l~~~l~~~l~~~~~~~~vr 699 (861)
T 2bpt_A 625 LAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSL----EEDFRRY-SDAMMNVLAQMISNPNARRELK 699 (861)
T ss_dssp HHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT----GGGGHHH-HHHHHHHHHHHHHCTTCCTTHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh----chhccch-HHHHHHHHHHHhCCccccHhhh
Confidence 98765431 1357999999998888999999999998886321 1111111 1234566777777653 5577
Q ss_pred HHHHHHHHHHhcCCCC
Q 037612 597 LSALVLLCYIALHVPD 612 (663)
Q Consensus 597 ~~Al~~L~~la~~~~~ 612 (663)
..++.++..++.+.++
T Consensus 700 ~~~~~~l~~l~~~~~~ 715 (861)
T 2bpt_A 700 PAVLSVFGDIASNIGA 715 (861)
T ss_dssp HHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhhh
Confidence 7899999888876554
No 59
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.77 E-value=3e-07 Score=99.04 Aligned_cols=289 Identities=10% Similarity=0.039 Sum_probs=170.3
Q ss_pred HHHHHHHHhccCC--CHHHHHHHHHHHHHhhcCC-hhhHHHHHhcCChHHHHHhhccC--ChHHHHHHHHHHHHhcCCCc
Q 037612 147 LIWEQVAILYTAG--SLEHKSDAAASLVSLARDN-DRYGKLIIEEGGVGPLLKLVKEG--KPEGQENAARAIGLLGRDPE 221 (663)
Q Consensus 147 ~v~~li~~L~~~G--~~e~k~~AA~~L~~La~~~-~~~~~~Ive~G~Ip~Lv~LL~sg--~~~~q~~Aa~AL~nLs~~~~ 221 (663)
++-.++..++. + +...|..|..+|..++... ...-.... ...++.|+.+|+.. ++.++..|++++.++...-+
T Consensus 129 ll~~L~~~l~~-~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 129 LIPQLVANVTN-PNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45667888888 8 8999999999999998642 11111111 23688899999887 68999999999999764321
Q ss_pred -ch-HHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhH-HHHHHhCCcHHHHHHHhccCccchhhhHHHhhhh
Q 037612 222 -SV-EHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKC-QDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKA 298 (663)
Q Consensus 222 -~~-~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~-r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~ 298 (663)
+- ......-.++.|.+.+.+++++++..++++|..++...++. +..+ ..+.++.++..++... +.-+... .
T Consensus 207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~--~~v~~~a---~ 280 (462)
T 1ibr_B 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDI--DEVALQG---I 280 (462)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSS--HHHHHHH---H
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCc--hHHHHHH---H
Confidence 11 01111124677777788888999999999999999754332 1111 1155666666554321 0000000 0
Q ss_pred hhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCcccc
Q 037612 299 TSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVK 378 (663)
Q Consensus 299 ~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~ 378 (663)
..+..+..... ...-.. + +..
T Consensus 281 ~~l~~~~~~~~-------------------------------------------~~~~~~--------------~--~~~ 301 (462)
T 1ibr_B 281 EFWSNVCDEEM-------------------------------------------DLAIEA--------------S--EAA 301 (462)
T ss_dssp HHHHHHHHHHH-------------------------------------------HHHHHH--------------C--CTT
T ss_pred HHHHHHHHHHH-------------------------------------------HHHHhc--------------c--ccc
Confidence 01111110000 000000 0 000
Q ss_pred ccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcC-
Q 037612 379 SNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKG- 457 (663)
Q Consensus 379 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~- 457 (663)
.++. +..+.... . .+. . -...++.+...+...
T Consensus 302 ~~~~----------------------~~~~~~~~-~----~~~----~----------------~~~l~p~l~~~l~~~d 334 (462)
T 1ibr_B 302 EQGR----------------------PPEHTSKF-Y----AKG----A----------------LQYLVPILTQTLTKQD 334 (462)
T ss_dssp CSSS----------------------CSSCCCCC-H----HHH----H----------------HHHHHHHHHHHTTCCC
T ss_pred ccCC----------------------CccchhHH-H----HHH----H----------------hhhccHHHHHHHHhcc
Confidence 0000 00000000 0 000 0 012344455555432
Q ss_pred ------ChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhh--
Q 037612 458 ------PEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKA-- 529 (663)
Q Consensus 458 ------~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~-- 529 (663)
+..++..|+.+|..++..-.. .....+++.+...+.+.+..++..++.+||+++.....
T Consensus 335 ~d~~~~~~~~r~~a~~~L~~l~~~~~~-------------~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~ 401 (462)
T 1ibr_B 335 ENDDDDDWNPCKAAGVCLMLLATCCED-------------DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ 401 (462)
T ss_dssp SSCCTTCCSHHHHHHHHHHHHHHHTTT-------------THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTT
T ss_pred cccccccchHHHHHHHHHHHHHHhccH-------------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHH
Confidence 347899999999988754321 11234666777788877888999999999999975431
Q ss_pred ---HhhccHHHHHHhcccCCHHHHHHHHHHHHhccc
Q 037612 530 ---TETRMIVPLVKLLDEREAEVSREASIALTKFAC 562 (663)
Q Consensus 530 ---~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~ 562 (663)
.-..++|+|+.+|.+.++.|+..|+|+|++++.
T Consensus 402 ~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 402 LKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp TCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 114589999999999999999999999999973
No 60
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.63 E-value=5e-06 Score=97.23 Aligned_cols=330 Identities=11% Similarity=0.050 Sum_probs=193.3
Q ss_pred HHHHHHHHhccCC--CHHHHHHHHHHHHHhhcCChhhHHHHH--hcCChHHHHHhhccC--ChHHHHHHHHHHHHhcCC-
Q 037612 147 LIWEQVAILYTAG--SLEHKSDAAASLVSLARDNDRYGKLII--EEGGVGPLLKLVKEG--KPEGQENAARAIGLLGRD- 219 (663)
Q Consensus 147 ~v~~li~~L~~~G--~~e~k~~AA~~L~~La~~~~~~~~~Iv--e~G~Ip~Lv~LL~sg--~~~~q~~Aa~AL~nLs~~- 219 (663)
++..++..+.. + +...|..|..+|..++..-.. ..+. -...++.|+.+|..+ +...+..|..+|.++...
T Consensus 129 ll~~l~~~l~~-~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (876)
T 1qgr_A 129 LIPQLVANVTN-PNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (876)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34556778888 8 889999999999999854211 1111 124577888888876 578999999999998853
Q ss_pred Ccc-hHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhh
Q 037612 220 PES-VEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKA 298 (663)
Q Consensus 220 ~~~-~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~ 298 (663)
..+ .........++.+.+.+.+.+++++..+..+|..++...+..-........++.++..+.... +.-+... .
T Consensus 206 ~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~v~~~a---l 280 (876)
T 1qgr_A 206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI--DEVALQG---I 280 (876)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSS--HHHHHHH---H
T ss_pred HHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCc--hHHHHHH---H
Confidence 111 111111236777888888888999999999999999754433222223356666666554321 0000000 0
Q ss_pred hhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCcccc
Q 037612 299 TSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVK 378 (663)
Q Consensus 299 ~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~ 378 (663)
..+..+....... ....... .
T Consensus 281 ~~l~~l~~~~~~~--------------------------------------~~~~~~~---------------------~ 301 (876)
T 1qgr_A 281 EFWSNVCDEEMDL--------------------------------------AIEASEA---------------------A 301 (876)
T ss_dssp HHHHHHHHHHHHH--------------------------------------HHHHHHH---------------------H
T ss_pred HHHHHHHHHHHhH--------------------------------------hhhhccc---------------------c
Confidence 0111111000000 0000000 0
Q ss_pred ccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhc--
Q 037612 379 SNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEK-- 456 (663)
Q Consensus 379 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~-- 456 (663)
.++. .|. + .... ..+. .+ ...++.+..+|..
T Consensus 302 ~~~~---------~~~-------------~--~~~~---~~~~----~~----------------~~ll~~ll~~l~~~~ 334 (876)
T 1qgr_A 302 EQGR---------PPE-------------H--TSKF---YAKG----AL----------------QYLVPILTQTLTKQD 334 (876)
T ss_dssp HHSS---------CCS-------------S--CCCC---HHHH----HH----------------HHHHHHHHHHTTCCC
T ss_pred ccCC---------Ccc-------------c--hhHH---HHHH----HH----------------HHHhHHHHHHhhccc
Confidence 0000 000 0 0000 0000 00 1124455555542
Q ss_pred -----CChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchh-h-
Q 037612 457 -----GPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFK-A- 529 (663)
Q Consensus 457 -----~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~-~- 529 (663)
.+..++..++.+|..++..... .....+++.+...+.+.+..++..++.++|.++.... .
T Consensus 335 ~d~~~~~~~~r~~a~~~l~~l~~~~~~-------------~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~ 401 (876)
T 1qgr_A 335 ENDDDDDWNPCKAAGVCLMLLATCCED-------------DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ 401 (876)
T ss_dssp SSCCTTCCCHHHHHHHHHHHHHHHHGG-------------GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHHCcH-------------hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHH
Confidence 2347899999999888644321 1123456666677777778899999999999997654 1
Q ss_pred ---HhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCC-CC-ChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHH
Q 037612 530 ---TETRMIVPLVKLLDEREAEVSREASIALTKFACSDN-YL-HSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLC 604 (663)
Q Consensus 530 ---~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~-~~-~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~ 604 (663)
.-..++|.|+..|++.++.|+..|+|+|++++..-. +. ...+.. ..++.|+..|... +.++..|+.+|.
T Consensus 402 ~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~-----~~l~~l~~~l~~~-~~v~~~a~~al~ 475 (876)
T 1qgr_A 402 LKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLA-----PLLQCLIEGLSAE-PRVASNVCWAFS 475 (876)
T ss_dssp HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHH-----HHHHHHHHHTTSC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHH-----HHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence 123579999999999999999999999999974311 00 011222 2456777878764 668888999999
Q ss_pred HHhcC
Q 037612 605 YIALH 609 (663)
Q Consensus 605 ~la~~ 609 (663)
+++..
T Consensus 476 ~l~~~ 480 (876)
T 1qgr_A 476 SLAEA 480 (876)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88744
No 61
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.60 E-value=1.1e-05 Score=94.07 Aligned_cols=334 Identities=12% Similarity=0.154 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCc--chHHHHHcCchHHHHHh
Q 037612 161 LEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPE--SVEHMIHSGVCLVFAKI 238 (663)
Q Consensus 161 ~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~--~~~~iv~aGaIp~Lv~l 238 (663)
...|..|+.+|..++.... ..++ ...+|.+...|.+.+...++.|+++|+.++.... .-...+. ..+|.|++.
T Consensus 345 ~~~r~~a~~~L~~l~~~~~---~~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~ 419 (861)
T 2bpt_A 345 WNVSMSAGACLQLFAQNCG---NHIL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNL 419 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHG---GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHG
T ss_pred CcHHHHHHHHHHHHHHHcc---HhHH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHH
Confidence 3578888899999886422 1111 1345666667777788999999999999996432 2222222 478999999
Q ss_pred hccCChhHHHHHHHHHHHHhcCChhHHHHHHhCC----cHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCcc
Q 037612 239 LKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHN----IIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNA 314 (663)
Q Consensus 239 L~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g----~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~ 314 (663)
++++++.++..++|+|++++..-+. .+.... .+|.|+..|..
T Consensus 420 l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~~l~~l~~~l~~------------------------------- 465 (861)
T 2bpt_A 420 MNDQSLQVKETTAWCIGRIADSVAE---SIDPQQHLPGVVQACLIGLQD------------------------------- 465 (861)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHHGG---GSCTTTTHHHHHHHHHHHHTS-------------------------------
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhhh---hcCCHHHHHHHHHHHHHHhcc-------------------------------
Confidence 9999999999999999999852110 000011 12222222211
Q ss_pred ccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccc
Q 037612 315 NANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQH 394 (663)
Q Consensus 315 ~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~ 394 (663)
T Consensus 466 -------------------------------------------------------------------------------- 465 (861)
T 2bpt_A 466 -------------------------------------------------------------------------------- 465 (861)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCCh-----hhhHHHhhhccHHHHHHHhhcCC--hhHHHHHHH
Q 037612 395 QHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNS-----PICRSITESRALLCFAVLLEKGP--EDVQYNSAM 467 (663)
Q Consensus 395 ~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~-----~~~~~I~esgal~~L~~LL~~~~--~~vq~~aa~ 467 (663)
++ .++..|+.+|.+++.+.. .....+ ...++.|.+++++.+ .+++..++.
T Consensus 466 -----------------~~----~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~ 522 (861)
T 2bpt_A 466 -----------------HP----KVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFS 522 (861)
T ss_dssp -----------------CH----HHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHH
T ss_pred -----------------Ch----HHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHH
Confidence 11 235667777777765311 111111 234567778887544 689999999
Q ss_pred HHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhc---------------CcchhhHHHHHHHHhhhchhhH--
Q 037612 468 ALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKA---------------DSDLLIPCIKAVGNLARTFKAT-- 530 (663)
Q Consensus 468 AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~---------------~~~l~~~a~~aLg~La~~~~~~-- 530 (663)
+|..+....... .. +....+++.++..+... ..+++..++.+|+.+.+.+...
T Consensus 523 al~~l~~~~~~~--~~--------~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 592 (861)
T 2bpt_A 523 ALTTMVEYATDT--VA--------ETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVE 592 (861)
T ss_dssp HHHHHHHHCCGG--GH--------HHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTG
T ss_pred HHHHHHHHcchh--hH--------HHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 999987554321 11 12234555566655532 2446778889999988765541
Q ss_pred --hhccHHHHHHhcccCCH-HHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 037612 531 --ETRMIVPLVKLLDEREA-EVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIA 607 (663)
Q Consensus 531 --e~~~I~pLV~LL~~~~~-~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la 607 (663)
-..+++.++.+|+..+. .+++++..+++.++..-. .+-..++- .-++.|+..+...++.++..|+.++..++
T Consensus 593 ~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~---~~~~~~l~--~i~~~l~~~l~~~~~~vr~~a~~~l~~l~ 667 (861)
T 2bpt_A 593 PVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLG---KGFEKYLE--TFSPYLLKALNQVDSPVSITAVGFIADIS 667 (861)
T ss_dssp GGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHG---GGGHHHHH--HHHHHHHHHHHCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHh---hhHHHHHH--HHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 12467888888887776 899999999998873210 11112222 25678888887777777778999998887
Q ss_pred cCCCChHHHHhccchhhhhhccccccccccCCcHHHHHHHHHHHHh
Q 037612 608 LHVPDSEDLAQAEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRLEL 653 (663)
Q Consensus 608 ~~~~~~~~i~~~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~le~ 653 (663)
...++.-.-.-..+++.+....... ..++.++.-+..++..+-.
T Consensus 668 ~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~~vr~~~~~~l~~l~~ 711 (861)
T 2bpt_A 668 NSLEEDFRRYSDAMMNVLAQMISNP--NARRELKPAVLSVFGDIAS 711 (861)
T ss_dssp HHTGGGGHHHHHHHHHHHHHHHHCT--TCCTTHHHHHHHHHHHHHH
T ss_pred HHhchhccchHHHHHHHHHHHhCCc--cccHhhhHHHHHHHHHHHH
Confidence 6655321101123344332111110 0124566666666655543
No 62
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.52 E-value=7.6e-06 Score=95.64 Aligned_cols=316 Identities=14% Similarity=0.104 Sum_probs=190.8
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhhcCCh-hhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcc----
Q 037612 148 IWEQVAILYTAGSLEHKSDAAASLVSLARDND-RYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPES---- 222 (663)
Q Consensus 148 v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~-~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~---- 222 (663)
+..+...|+. .+...|..|+.+|+.++.... ....... ...+|.|+.+|++.++.++..|+++|.+++.....
T Consensus 368 l~~l~~~l~~-~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 445 (876)
T 1qgr_A 368 LPFIKEHIKN-PDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIN 445 (876)
T ss_dssp HHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSS
T ss_pred HHHHHHHccC-CChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhccc
Confidence 3444567778 889999999999999987543 2122222 34799999999988899999999999999953211
Q ss_pred hHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHH-----------HHHHh--CCcHHHHHHHhccCccchh
Q 037612 223 VEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQ-----------DLFAQ--HNIIRLLVGHLAFETVQEH 289 (663)
Q Consensus 223 ~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r-----------~~i~~--~g~I~~LV~LL~sgt~~~~ 289 (663)
... -...++.|++.|.+. +.++..++++|.+++....+.. ..+.. ...+|.|+.++....
T Consensus 446 ~~~--l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~---- 518 (876)
T 1qgr_A 446 DVY--LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPD---- 518 (876)
T ss_dssp TTT--HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCS----
T ss_pred HHH--HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcC----
Confidence 111 134678888888875 8999999999999985311000 00000 001111111111000
Q ss_pred hhHHHhhhhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCccccccc
Q 037612 290 SKYAIVSKATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGN 369 (663)
Q Consensus 290 s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 369 (663)
T Consensus 519 -------------------------------------------------------------------------------- 518 (876)
T 1qgr_A 519 -------------------------------------------------------------------------------- 518 (876)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHH
Q 037612 370 VINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLC 449 (663)
Q Consensus 370 ~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~ 449 (663)
.++. .++..+..+|..++......+.... ...++.
T Consensus 519 ----------------------------------------~~~~----~~r~~~~~~l~~l~~~~~~~~~~~~-~~l~~~ 553 (876)
T 1qgr_A 519 ----------------------------------------GHQN----NLRSSAYESLMEIVKNSAKDCYPAV-QKTTLV 553 (876)
T ss_dssp ----------------------------------------SCST----THHHHHHHHHHHHHHTCCSTTHHHH-HHHHHH
T ss_pred ----------------------------------------cchh----hHHHHHHHHHHHHHHHCchhhHHHH-HHHHHH
Confidence 0011 1345566666666654333222211 222334
Q ss_pred HHHHhhc---------CC------hhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcC--cch
Q 037612 450 FAVLLEK---------GP------EDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKAD--SDL 512 (663)
Q Consensus 450 L~~LL~~---------~~------~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~--~~l 512 (663)
+...+.. ++ ++++..++.++..++..-+. .++ . |....+++.|+.++++.+ ..+
T Consensus 554 l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~-~~~-----~---~~~~~l~~~l~~~l~~~~~~~~v 624 (876)
T 1qgr_A 554 IMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQH-QDA-----L---QISDVVMASLLRMFQSTAGSGGV 624 (876)
T ss_dssp HHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCH-HHH-----H---TTHHHHHHHHHHHC-----CCHH
T ss_pred HHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhCh-hhh-----h---HHHHHHHHHHHHHHHhccCCCCc
Confidence 4443332 11 35677888888887644320 122 1 334567888888888764 368
Q ss_pred hhHHHHHHHHhhhchhhH----hhccHHHHHHhcccC-CHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHH
Q 037612 513 LIPCIKAVGNLARTFKAT----ETRMIVPLVKLLDER-EAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQL 587 (663)
Q Consensus 513 ~~~a~~aLg~La~~~~~~----e~~~I~pLV~LL~~~-~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~L 587 (663)
+..++.++++++..+... -..++|.|+..|.+. ++.++..|.++|+.++..- .++..... ..-++.|+..
T Consensus 625 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~----~~~~~~~~-~~i~~~l~~~ 699 (876)
T 1qgr_A 625 QEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRAL----QSNIIPFC-DEVMQLLLEN 699 (876)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHH----GGGGHHHH-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHH----HHhhhhhH-HHHHHHHHHH
Confidence 889999999998754331 134789999999887 8999999999999986321 01111111 2455677777
Q ss_pred HhcC--ChhHHHHHHHHHHHHhcCCC
Q 037612 588 VYFG--EQIVQLSALVLLCYIALHVP 611 (663)
Q Consensus 588 L~~~--~~~~q~~Al~~L~~la~~~~ 611 (663)
+..+ +..++..++.+++.++...+
T Consensus 700 l~~~~~~~~~~~~~~~~l~~i~~~~g 725 (876)
T 1qgr_A 700 LGNENVHRSVKPQILSVFGDIALAIG 725 (876)
T ss_dssp HTCTTSCGGGHHHHHHHHHHHHHHHG
T ss_pred hCCccccHHhhHHHHHHHHHHHHHhc
Confidence 8763 44577789999998875444
No 63
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.25 E-value=8.6e-08 Score=87.25 Aligned_cols=119 Identities=18% Similarity=0.206 Sum_probs=89.1
Q ss_pred hccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHh
Q 037612 444 SRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNL 523 (663)
Q Consensus 444 sgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~L 523 (663)
...++.|..+|++.++.++..|+++|.++. .+ .++.|++++++.++.++..++.+||.+
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~-----------------~~----~~~~L~~~L~d~~~~vR~~A~~aL~~~ 69 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMG-----------------DE----AFEPLLESLSNEDWRIRGAAAWIIGNF 69 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCS-----------------ST----THHHHHHGGGCSCHHHHHHHHHHHGGG
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhC-----------------ch----HHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 345678888999999999999998875441 01 147888999988899999999999988
Q ss_pred hhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHH
Q 037612 524 ARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLL 603 (663)
Q Consensus 524 a~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L 603 (663)
.. ...+++|+.+|++.++.|+.+|+++|+++.. ..+++.|+.+|..+++.++..|+.+|
T Consensus 70 ~~------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---------------~~a~~~L~~~l~d~~~~vr~~A~~aL 128 (131)
T 1te4_A 70 QD------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG---------------ERVRAAMEKLAETGTGFARKVAVNYL 128 (131)
T ss_dssp CS------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---------------HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred CC------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------------HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 63 3469999999999999999999999999851 12578999999888887888888877
Q ss_pred H
Q 037612 604 C 604 (663)
Q Consensus 604 ~ 604 (663)
.
T Consensus 129 ~ 129 (131)
T 1te4_A 129 E 129 (131)
T ss_dssp G
T ss_pred H
Confidence 4
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.20 E-value=0.00013 Score=83.74 Aligned_cols=304 Identities=14% Similarity=0.161 Sum_probs=189.6
Q ss_pred hHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhh--ccCChHHHHHHHHHHHHhcC-CC
Q 037612 144 ILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLV--KEGKPEGQENAARAIGLLGR-DP 220 (663)
Q Consensus 144 i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL--~sg~~~~q~~Aa~AL~nLs~-~~ 220 (663)
+...+..+..-|++ .+.-.|..|..+|+++.. ++ +. ...+|++.++| .+.++-+++.|+.|+..+.. ++
T Consensus 109 ~~L~iN~l~kDl~~-~n~~ir~lALr~L~~i~~--~e----~~-~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p 180 (621)
T 2vgl_A 109 IRLINNAIKNDLAS-RNPTFMGLALHCIANVGS--RE----MA-EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP 180 (621)
T ss_dssp HHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHCC--HH----HH-HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHhhccCC--HH----HH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh
Confidence 44445566667888 899999999999999853 33 22 35689999999 77789999999999999996 44
Q ss_pred cchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhh
Q 037612 221 ESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATS 300 (663)
Q Consensus 221 ~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~s 300 (663)
+.. -..+.++.|.++|.+.++.|+..|..++..++..+++. -...+|.++..|..
T Consensus 181 ~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~-----~~~~~~~~~~~L~~----------------- 235 (621)
T 2vgl_A 181 DLV---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE-----FKTSVSLAVSRLSR----------------- 235 (621)
T ss_dssp GGC---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH-----HTTHHHHHHHHHHH-----------------
T ss_pred hhc---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH-----HHHHHHHHHHHHHH-----------------
Confidence 322 12589999999999999999999999999998765542 12356666666531
Q ss_pred HHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCcccccc
Q 037612 301 IHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSN 380 (663)
Q Consensus 301 l~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~ 380 (663)
++.. .... ..++...
T Consensus 236 ---ll~~-~~~~-------------------------------------------------------------~~~~~~~ 250 (621)
T 2vgl_A 236 ---IVTS-ASTD-------------------------------------------------------------LQDYTYY 250 (621)
T ss_dssp ---HHHC-CSSS-------------------------------------------------------------CSTTEET
T ss_pred ---HHhC-CCCC-------------------------------------------------------------ccchhhc
Confidence 0000 0000 0000000
Q ss_pred CCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcC-ChhhhHHHhhhccHHHHHHHhh----
Q 037612 381 GQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKG-NSPICRSITESRALLCFAVLLE---- 455 (663)
Q Consensus 381 g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~g-n~~~~~~I~esgal~~L~~LL~---- 455 (663)
|. .||- ++....+.|..++.. ++..... ...+|..++.
T Consensus 251 ~~----------------------------~~~w----~qi~il~ll~~~~~~~d~~~~~~-----l~~~L~~il~~~~~ 293 (621)
T 2vgl_A 251 FV----------------------------PAPW----LSVKLLRLLQCYPPPEDPAVRGR-----LTECLETILNKAQE 293 (621)
T ss_dssp TE----------------------------ESHH----HHHHHHHHGGGSSSCSSHHHHHH-----HHHHHHHHHHHHHS
T ss_pred CC----------------------------CCch----HHHHHHHHHHHhCCCCCHHHHHH-----HHHHHHHHHHhhcc
Confidence 00 0010 111112222222211 0111110 0112222221
Q ss_pred --------cCCh--hHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhh
Q 037612 456 --------KGPE--DVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLAR 525 (663)
Q Consensus 456 --------~~~~--~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~ 525 (663)
+.+. .|.++|+.+++.+. .++++++ .+++.|.+++.+.+++++..+..+|..++.
T Consensus 294 ~~ks~~l~~~n~~~aVl~ea~~~i~~l~----~~~~~~~-----------~~~~~L~~~L~~~~~niry~aL~~l~~l~~ 358 (621)
T 2vgl_A 294 PPKSKKVQHSNAKNAVLFEAISLIIHHD----SEPNLLV-----------RACNQLGQFLQHRETNLRYLALESMCTLAS 358 (621)
T ss_dssp CCSCSSHHHHHHHHHHHHHHHHHHHHHC----CCHHHHH-----------HHHHHHHHHSSCSCHHHHHHHHHHHHHHTT
T ss_pred CcccccccccchHHHHHHHHHHHHHhcC----CcHHHHH-----------HHHHHHHHHhcCCCcchHHHHHHHHHHHHh
Confidence 1122 78888999988774 2445443 357788899988889999999999999987
Q ss_pred chhhH--hhccHHHHHHhcc-cCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHH
Q 037612 526 TFKAT--ETRMIVPLVKLLD-EREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVL 602 (663)
Q Consensus 526 ~~~~~--e~~~I~pLV~LL~-~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~ 602 (663)
..... =....+-++..|+ +.+..++..|...|.++++. ++...|++ -|...+...+...+..++..
T Consensus 359 ~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~------~Nv~~Iv~-----eL~~yl~~~d~~~~~~~v~~ 427 (621)
T 2vgl_A 359 SEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR------SNAQQIVA-----EMLSYLETADYSIREEIVLK 427 (621)
T ss_dssp CTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH------HHHHHHHH-----HHHHHHHHCCHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh------hhHHHHHH-----HHHHHHHhcCHHHHHHHHHH
Confidence 65321 1345677788888 89999999999999999743 34555443 45555555565566666666
Q ss_pred HHHHhc
Q 037612 603 LCYIAL 608 (663)
Q Consensus 603 L~~la~ 608 (663)
++.++.
T Consensus 428 I~~la~ 433 (621)
T 2vgl_A 428 VAILAE 433 (621)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666663
No 65
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.94 E-value=9.2e-05 Score=90.76 Aligned_cols=265 Identities=15% Similarity=0.163 Sum_probs=171.4
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHH
Q 037612 148 IWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMI 227 (663)
Q Consensus 148 v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv 227 (663)
+-.++..+.+ .+.+.|..|...|.+....+...-..-.....++.|++.|.+.++..+..|+.+|.+++..-.. ..+
T Consensus 8 l~~lL~~l~s-~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~- 84 (1230)
T 1u6g_C 8 ISNLLEKMTS-SDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQV- 84 (1230)
T ss_dssp HHHHHHHTTC-SSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHH-
T ss_pred HHHHHHhcCC-CCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHH-
Confidence 4456778888 8999999999999886543211000001123578899999888899999999999999953222 111
Q ss_pred HcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhH------HHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhH
Q 037612 228 HSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKC------QDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSI 301 (663)
Q Consensus 228 ~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~------r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl 301 (663)
.-.++.|++.|.++++.++..++.+|+.++...+.. .... ....+|.|+..+...
T Consensus 85 -~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~~----------------- 145 (1230)
T 1u6g_C 85 -ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQ----------------- 145 (1230)
T ss_dssp -HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCC-----------------
T ss_pred -HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcCC-----------------
Confidence 236788888888888899999999999998532211 0000 112344444444310
Q ss_pred HHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccC
Q 037612 302 HAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNG 381 (663)
Q Consensus 302 ~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g 381 (663)
T Consensus 146 -------------------------------------------------------------------------------- 145 (1230)
T 1u6g_C 146 -------------------------------------------------------------------------------- 145 (1230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhH
Q 037612 382 QDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDV 461 (663)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~v 461 (663)
+++ ..+..|..+|..++......-.. .-...+..|...|.+.+..+
T Consensus 146 -----------------------------~~~----~~~~~al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~~~~v 191 (1230)
T 1u6g_C 146 -----------------------------EDV----SVQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTSPRLAV 191 (1230)
T ss_dssp -----------------------------SCH----HHHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSSHHH
T ss_pred -----------------------------Cch----HHHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcCCcHHH
Confidence 011 13445555555555311100000 01234567777888888899
Q ss_pred HHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcC-cchhhHHHHHHHHhhhchhhH----hhccHH
Q 037612 462 QYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKAD-SDLLIPCIKAVGNLARTFKAT----ETRMIV 536 (663)
Q Consensus 462 q~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~-~~l~~~a~~aLg~La~~~~~~----e~~~I~ 536 (663)
|..|+.||..++...+.. .| ..+++.|+..+...+ +.++..++.+++.++...... -..++|
T Consensus 192 R~~a~~al~~l~~~~~~~------~~-------~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~ 258 (1230)
T 1u6g_C 192 RKRTIIALGHLVMSCGNI------VF-------VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIP 258 (1230)
T ss_dssp HHHHHHHHHHHTTTC----------C-------TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHH
T ss_pred HHHHHHHHHHHHHhcCHH------HH-------HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999998886543211 11 236778887777654 467888999999998764431 135799
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhcc
Q 037612 537 PLVKLLDEREAEVSREASIALTKFA 561 (663)
Q Consensus 537 pLV~LL~~~~~~v~~eAa~AL~~la 561 (663)
.+++.+.+.+++++..|..++..++
T Consensus 259 ~ll~~l~d~~~~vR~~a~~~l~~l~ 283 (1230)
T 1u6g_C 259 LVVKFCNVDDDELREYCIQAFESFV 283 (1230)
T ss_dssp HHHHHHSSCCTTTHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 9999998889999999999998876
No 66
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.93 E-value=0.0022 Score=76.24 Aligned_cols=296 Identities=15% Similarity=0.103 Sum_probs=187.6
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhc---cCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHH
Q 037612 160 SLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVK---EGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFA 236 (663)
Q Consensus 160 ~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~---sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv 236 (663)
..-.|.-|+++|+.+-..+. .+++..|-..|. ++++..+-.|+.+|+.+.....+ .++..|.
T Consensus 371 ~~~~k~sA~aSLGlIh~g~~--------~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-------~~~~lL~ 435 (963)
T 4ady_A 371 QNWAKFTATASLGVIHKGNL--------LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-------DTTDYLK 435 (963)
T ss_dssp CTHHHHHHHHHHHHHTSSCT--------TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-------HHHHHHH
T ss_pred chHHHHHHHHHhhhhccCch--------HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-------HHHHHHH
Confidence 33467778888888765533 246788888887 56788999999999999865443 1578888
Q ss_pred HhhccCC--------hhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhh
Q 037612 237 KILKEGP--------MKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVAS 308 (663)
Q Consensus 237 ~lL~s~~--------~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~ 308 (663)
..|.+.+ +.++.-|+-+|+.....+. ++.++..|..+|..... ...+... -++. ++.
T Consensus 436 ~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~-------~eev~e~L~~~L~dd~~--~~~~~Aa---lALG-li~-- 500 (963)
T 4ady_A 436 NIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA-------NIEVYEALKEVLYNDSA--TSGEAAA---LGMG-LCM-- 500 (963)
T ss_dssp HHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC-------CHHHHHHHHHHHHTCCH--HHHHHHH---HHHH-HHH--
T ss_pred HHHcCccccccccccHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHhcCCH--HHHHHHH---HHHh-hhh--
Confidence 8887654 6677788888888754321 11245667777764421 0000000 0111 010
Q ss_pred cccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccc
Q 037612 309 NKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQ 388 (663)
Q Consensus 309 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~ 388 (663)
..++. . .-...+++
T Consensus 501 vGTgn-------~-----------------------~ai~~LL~------------------------------------ 514 (963)
T 4ady_A 501 LGTGK-------P-----------------------EAIHDMFT------------------------------------ 514 (963)
T ss_dssp TTCCC-------H-----------------------HHHHHHHH------------------------------------
T ss_pred cccCC-------H-----------------------HHHHHHHH------------------------------------
Confidence 11000 0 00001111
Q ss_pred cccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhh-cCChhHHHHHHH
Q 037612 389 NHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLE-KGPEDVQYNSAM 467 (663)
Q Consensus 389 ~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~-~~~~~vq~~aa~ 467 (663)
.+.. -++ ...++.++.+|+.+..|+...+ +.++.+|. ..++.+++-+++
T Consensus 515 --------~~~e---------~~~----e~vrR~aalgLGll~~g~~e~~---------~~li~~L~~~~dp~vRygaa~ 564 (963)
T 4ady_A 515 --------YSQE---------TQH----GNITRGLAVGLALINYGRQELA---------DDLITKMLASDESLLRYGGAF 564 (963)
T ss_dssp --------HHHH---------CSC----HHHHHHHHHHHHHHTTTCGGGG---------HHHHHHHHHCSCHHHHHHHHH
T ss_pred --------HHhc---------cCc----HHHHHHHHHHHHhhhCCChHHH---------HHHHHHHHhCCCHHHHHHHHH
Confidence 0000 011 2468889999999988876554 45555555 578899999999
Q ss_pred HHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhh-hcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhc-ccC
Q 037612 468 ALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIE-KADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLL-DER 545 (663)
Q Consensus 468 AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~-~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL-~~~ 545 (663)
++..-.++..++ .+|+.|+..+. +.+++++..|+.+||-++-.- ...++.++.+| +..
T Consensus 565 alglAyaGTGn~----------------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~----~e~v~rlv~~L~~~~ 624 (963)
T 4ady_A 565 TIALAYAGTGNN----------------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD----YTTVPRIVQLLSKSH 624 (963)
T ss_dssp HHHHHTTTSCCH----------------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS----CSSHHHHTTTGGGCS
T ss_pred HHHHHhcCCCCH----------------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC----HHHHHHHHHHHHhcC
Confidence 987555555432 24555665554 445788999999999875332 24799999866 678
Q ss_pred CHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCC
Q 037612 546 EAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPD 612 (663)
Q Consensus 546 ~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~ 612 (663)
++.|+..|++||+.++.+.. + . ..|..|..|+...+..+...|+.+|..+-....+
T Consensus 625 d~~VR~gAalALGli~aGn~-----~-~-----~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 625 NAHVRCGTAFALGIACAGKG-----L-Q-----SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTE 680 (963)
T ss_dssp CHHHHHHHHHHHHHHTSSSC-----C-H-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCT
T ss_pred CHHHHHHHHHHHHHhccCCC-----c-H-----HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999864321 1 1 2456888889888887877899999988544444
No 67
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.91 E-value=0.00038 Score=85.31 Aligned_cols=307 Identities=13% Similarity=0.065 Sum_probs=191.1
Q ss_pred hHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcch--
Q 037612 146 CLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESV-- 223 (663)
Q Consensus 146 ~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~-- 223 (663)
.++..++..|.. .+.+.|..|+.+|..++..... ..+ ...++.|+..|.++++..+..|+.+|..++..-...
T Consensus 48 ~il~~Ll~~L~d-~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~ 122 (1230)
T 1u6g_C 48 KVVKMILKLLED-KNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 122 (1230)
T ss_dssp HHHHHHHHHTTC-SSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc
Confidence 344556677788 8999999999999999864332 111 235788889888888888999999999998421111
Q ss_pred ----HHHHHcCchHHHHHhhc-cCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhh
Q 037612 224 ----EHMIHSGVCLVFAKILK-EGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKA 298 (663)
Q Consensus 224 ----~~iv~aGaIp~Lv~lL~-s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~ 298 (663)
..-.-...+|.|.+.+. ++++.++..|..+|..++...+.. + . ..++.++..|-..
T Consensus 123 ~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~---l-~-~~~~~ll~~l~~~-------------- 183 (1230)
T 1u6g_C 123 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGL---L-V-NFHPSILTCLLPQ-------------- 183 (1230)
T ss_dssp -CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSS---C-T-TTHHHHHHHHGGG--------------
T ss_pred ccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhH---H-H-HHHHHHHHHHHHH--------------
Confidence 11122347899999998 577889999999999988422110 0 0 0111111111000
Q ss_pred hhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCcccc
Q 037612 299 TSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVK 378 (663)
Q Consensus 299 ~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~ 378 (663)
T Consensus 184 -------------------------------------------------------------------------------- 183 (1230)
T 1u6g_C 184 -------------------------------------------------------------------------------- 183 (1230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCC
Q 037612 379 SNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGP 458 (663)
Q Consensus 379 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~ 458 (663)
+. .+++ .++..|+.||..++...... + -...++.|...|....
T Consensus 184 -------------------L~----------~~~~----~vR~~a~~al~~l~~~~~~~---~-~~~~l~~l~~~L~~~~ 226 (1230)
T 1u6g_C 184 -------------------LT----------SPRL----AVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKND 226 (1230)
T ss_dssp -------------------GG----------CSSH----HHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTC
T ss_pred -------------------Hc----------CCcH----HHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhccCC
Confidence 00 0112 35778888888888643221 1 1234566666665543
Q ss_pred -hhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhH----hhc
Q 037612 459 -EDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKAT----ETR 533 (663)
Q Consensus 459 -~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~----e~~ 533 (663)
.+++..++.++..|+..... .|.+ -...+++.+++.+.+.+++++..+..+++.+++.+... -..
T Consensus 227 ~~~~r~~a~~~l~~l~~~~~~-------~~~~---~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~ 296 (1230)
T 1u6g_C 227 SMSTTRTYIQCIAAISRQAGH-------RIGE---YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVST 296 (1230)
T ss_dssp SSCSCTTHHHHHHHHHHHSSG-------GGTT---SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhHH-------HHHH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHH
Confidence 46777888888888654321 2332 23468888999998888999999999999998865431 124
Q ss_pred cHHHHHHhcccC-------------------------------------CHHHHHHHHHHHHhcccCCCCCChhhHHHHH
Q 037612 534 MIVPLVKLLDER-------------------------------------EAEVSREASIALTKFACSDNYLHSDHSKAII 576 (663)
Q Consensus 534 ~I~pLV~LL~~~-------------------------------------~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv 576 (663)
++|++++.+... ...+++.|+.+|..++... ++....+.
T Consensus 297 li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~----~~~~~~~~ 372 (1230)
T 1u6g_C 297 IINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTR----HEMLPEFY 372 (1230)
T ss_dssp HHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTC----CTTHHHHH
T ss_pred HHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhc----hhHHHHHH
Confidence 677777766310 1235778888888887522 12122222
Q ss_pred HcCCHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 037612 577 SAGGAKHLVQLVYFGEQIVQLSALVLLCYIAL 608 (663)
Q Consensus 577 ~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~ 608 (663)
..-++.|+..++..++.++..++.+|..+..
T Consensus 373 -~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 403 (1230)
T 1u6g_C 373 -KTVSPALISRFKEREENVKADVFHAYLSLLK 403 (1230)
T ss_dssp -TTTHHHHHSTTSCSSSHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 3345667776766666677777777766543
No 68
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.83 E-value=3.8e-05 Score=69.48 Aligned_cols=88 Identities=11% Similarity=0.111 Sum_probs=76.0
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhc
Q 037612 447 LLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLART 526 (663)
Q Consensus 447 l~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~ 526 (663)
++.|..+|++.++.++..++++|.++.. ..+++.|++++++.++.++..++.+||.+..
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------------------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~- 102 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQD--------------------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG- 102 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------------------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-
Confidence 6889999999999999999999976631 2357889999999999999999999998862
Q ss_pred hhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhc
Q 037612 527 FKATETRMIVPLVKLLDEREAEVSREASIALTKF 560 (663)
Q Consensus 527 ~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~l 560 (663)
...++.|+.+|++.++.|+..|++||.++
T Consensus 103 -----~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 103 -----ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -----HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -----HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 35799999999999999999999999864
No 69
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.75 E-value=0.0058 Score=69.91 Aligned_cols=284 Identities=14% Similarity=0.085 Sum_probs=182.6
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhh
Q 037612 160 SLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKIL 239 (663)
Q Consensus 160 ~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL 239 (663)
+...|.++...|.++.....+ -..+.+..++++.+.+...++-+-.++.+++.....-..+ ++..|.+=|
T Consensus 51 ~~~~k~~~l~Kli~l~~~G~d------~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L----~iN~l~kDl 120 (621)
T 2vgl_A 51 DGYSKKKYVCKLLFIFLLGHD------IDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL----INNAIKNDL 120 (621)
T ss_dssp CHHHHHHHHHHHHHHHHHSCC------CCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH----HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCC------CchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH----HHHHHHHhc
Confidence 566777777776665432221 0347888899999989999999999998888643222222 567788888
Q ss_pred ccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCC
Q 037612 240 KEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGS 319 (663)
Q Consensus 240 ~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~ 319 (663)
.++++-++..|..+|+++.. ++.-. ..+|++..+|.++.
T Consensus 121 ~~~n~~ir~lALr~L~~i~~--~e~~~-----~l~~~v~~~l~~~d---------------------------------- 159 (621)
T 2vgl_A 121 ASRNPTFMGLALHCIANVGS--REMAE-----AFAGEIPKILVAGD---------------------------------- 159 (621)
T ss_dssp HSCCHHHHHHHHHHHHHHCC--HHHHH-----HHTTHHHHHHHCSS----------------------------------
T ss_pred CCCCHHHHHHHHHHhhccCC--HHHHH-----HHHHHHHHHHhCCC----------------------------------
Confidence 89999999999999999963 33221 12344433331110
Q ss_pred CCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcccccccccccccccc
Q 037612 320 NNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLS 399 (663)
Q Consensus 320 ~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~ 399 (663)
T Consensus 160 -------------------------------------------------------------------------------- 159 (621)
T 2vgl_A 160 -------------------------------------------------------------------------------- 159 (621)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcc
Q 037612 400 NYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKD 479 (663)
Q Consensus 400 ~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~ 479 (663)
.+| .++..|+.|+.++..-+++.. ...+.+..+.++|...++.|+.+|..+|.+|+.. +
T Consensus 160 -----------~~~----~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~---~ 218 (621)
T 2vgl_A 160 -----------TMD----SVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK---N 218 (621)
T ss_dssp -----------SCH----HHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH---C
T ss_pred -----------CCH----HHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh---C
Confidence 122 357788889998888555433 2247788999999999999999999999998643 3
Q ss_pred HHHHhhhcCCCCchhHhHHHHHHHHhhhc-------------CcchhhHHHHHHHHhhhch-hhHhhccHHHHHHhcc--
Q 037612 480 AELRRSAFKPNAPACKAVVDQLFRIIEKA-------------DSDLLIPCIKAVGNLARTF-KATETRMIVPLVKLLD-- 543 (663)
Q Consensus 480 ~~~rr~a~~~~~~a~~~vv~qL~~ll~~~-------------~~~l~~~a~~aLg~La~~~-~~~e~~~I~pLV~LL~-- 543 (663)
++. |++ .....+..|-+++..+ ++-.++..++.|+.+++.. ......++.+|-+++.
T Consensus 219 ~~~----~~~---~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~ 291 (621)
T 2vgl_A 219 PEE----FKT---SVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKA 291 (621)
T ss_dssp HHH----HTT---HHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHH
T ss_pred hHH----HHH---HHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence 331 222 1122344444555432 3457777788888777532 2212233444444432
Q ss_pred ----------cCC--HHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCC
Q 037612 544 ----------ERE--AEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVP 611 (663)
Q Consensus 544 ----------~~~--~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~ 611 (663)
+.+ ..|.-||+.++..+... ++... .++..|..+|.++++.+|--|+..|..++...+
T Consensus 292 ~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~-----~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~ 361 (621)
T 2vgl_A 292 QEPPKSKKVQHSNAKNAVLFEAISLIIHHDSE-----PNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEF 361 (621)
T ss_dssp HSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCC-----HHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTT
T ss_pred ccCcccccccccchHHHHHHHHHHHHHhcCCc-----HHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccC
Confidence 122 27888899998888521 11111 356788899988888888889999998876655
Q ss_pred C
Q 037612 612 D 612 (663)
Q Consensus 612 ~ 612 (663)
+
T Consensus 362 ~ 362 (621)
T 2vgl_A 362 S 362 (621)
T ss_dssp T
T ss_pred c
Confidence 4
No 70
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.68 E-value=0.00065 Score=67.61 Aligned_cols=179 Identities=11% Similarity=0.080 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhh-cCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHh
Q 037612 418 YMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLE-KGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKA 496 (663)
Q Consensus 418 ~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~-~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~ 496 (663)
+.+..|+.+|..+..+++...... -...+..|.+++. ..+..|+..++.+|..++..-.. .| .+-...
T Consensus 30 ~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~-------~~---~~~~~~ 98 (242)
T 2qk2_A 30 TLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK-------RF---SNYASA 98 (242)
T ss_dssp HHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG-------GG---HHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh-------hH---HHHHHH
Confidence 458889999999998743321111 1244667888894 88999999999999998743321 12 133456
Q ss_pred HHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHH
Q 037612 497 VVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAII 576 (663)
Q Consensus 497 vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv 576 (663)
+++.|++.+.+.++.++..++.+|.++.....- ..++|.|...|++.++.++.++...|..+...-. ........+-
T Consensus 99 ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~--~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~-~~~~~~~~l~ 175 (242)
T 2qk2_A 99 CVPSLLEKFKEKKPNVVTALREAIDAIYASTSL--EAQQESIVESLSNKNPSVKSETALFIARALTRTQ-PTALNKKLLK 175 (242)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC-GGGCCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC-CCCccHHHHH
Confidence 888999999888888999999999999876542 2479999999999999999999999999653210 0000122221
Q ss_pred HcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCC
Q 037612 577 SAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPD 612 (663)
Q Consensus 577 ~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~ 612 (663)
.-++.|+.+|....+.++..|..+|+.++...++
T Consensus 176 --~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 176 --LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp --HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred --HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCH
Confidence 3578999999888888888899999998776664
No 71
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.51 E-value=0.012 Score=69.82 Aligned_cols=259 Identities=13% Similarity=0.048 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhh-
Q 037612 161 LEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKIL- 239 (663)
Q Consensus 161 ~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL- 239 (663)
...+.-|+..|+.....+. ++.+++.|..+|...+....+.|+.+|+.+-....|... +..|++.+
T Consensus 451 ~~ir~gAaLGLGla~~GS~-------~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~a------i~~LL~~~~ 517 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSA-------NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEA------IHDMFTYSQ 517 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCC-------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHH------HHHHHHHHh
Confidence 4456667777776543321 123467788888877777778999999987544444333 35566655
Q ss_pred ccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCC
Q 037612 240 KEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGS 319 (663)
Q Consensus 240 ~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~ 319 (663)
.+.+..++..++.+|+.+.-..+ ..++.++++|.... ..+.+|.. ..++-.+....+
T Consensus 518 e~~~e~vrR~aalgLGll~~g~~---------e~~~~li~~L~~~~-dp~vRyga------a~alglAyaGTG------- 574 (963)
T 4ady_A 518 ETQHGNITRGLAVGLALINYGRQ---------ELADDLITKMLASD-ESLLRYGG------AFTIALAYAGTG------- 574 (963)
T ss_dssp HCSCHHHHHHHHHHHHHHTTTCG---------GGGHHHHHHHHHCS-CHHHHHHH------HHHHHHHTTTSC-------
T ss_pred ccCcHHHHHHHHHHHHhhhCCCh---------HHHHHHHHHHHhCC-CHHHHHHH------HHHHHHHhcCCC-------
Confidence 34567899999999998875432 35688888886431 11222221 111111111000
Q ss_pred CCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCcccccccccccccccc
Q 037612 320 NNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLS 399 (663)
Q Consensus 320 ~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~ 399 (663)
+. ..+..++ +.+.
T Consensus 575 n~-----------------------~aIq~LL--------------------------------------------~~~~ 587 (963)
T 4ady_A 575 NN-----------------------SAVKRLL--------------------------------------------HVAV 587 (963)
T ss_dssp CH-----------------------HHHHHHH--------------------------------------------HHHH
T ss_pred CH-----------------------HHHHHHH--------------------------------------------HHhc
Confidence 00 0000111 1111
Q ss_pred ccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHH-HhhcCChhHHHHHHHHHHHHhhhhhc
Q 037612 400 NYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAV-LLEKGPEDVQYNSAMALMEITAVAEK 478 (663)
Q Consensus 400 ~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~-LL~~~~~~vq~~aa~AL~~i~a~a~~ 478 (663)
.+ .+ ..++..|+.+|+.++.|+++. ++.++. |++++++.+++.+++||..++++..+
T Consensus 588 ~d---------~~----d~VRraAViaLGlI~~g~~e~---------v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~ 645 (963)
T 4ady_A 588 SD---------SN----DDVRRAAVIALGFVLLRDYTT---------VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL 645 (963)
T ss_dssp HC---------SC----HHHHHHHHHHHHHHTSSSCSS---------HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC
T ss_pred cC---------Cc----HHHHHHHHHHHHhhccCCHHH---------HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc
Confidence 00 11 235788999999999887533 344444 55789999999999999998766431
Q ss_pred cHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHH----hcc--cCCHHHHHH
Q 037612 479 DAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVK----LLD--EREAEVSRE 552 (663)
Q Consensus 479 ~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~----LL~--~~~~~v~~e 552 (663)
..+++.|.++..+.++.+...|+.|||-+.....+....-|..+.+ ... +.++..+--
T Consensus 646 ----------------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fg 709 (963)
T 4ady_A 646 ----------------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFG 709 (963)
T ss_dssp ----------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHH
T ss_pred ----------------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHH
Confidence 3467888899888889999999999998864333221112333333 333 356777888
Q ss_pred HHHHHHhc
Q 037612 553 ASIALTKF 560 (663)
Q Consensus 553 Aa~AL~~l 560 (663)
|..|.+-+
T Consensus 710 a~iAqGll 717 (963)
T 4ady_A 710 ACVAQGIM 717 (963)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888655
No 72
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.26 E-value=0.005 Score=61.73 Aligned_cols=150 Identities=21% Similarity=0.253 Sum_probs=118.2
Q ss_pred ccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhh
Q 037612 445 RALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLA 524 (663)
Q Consensus 445 gal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La 524 (663)
+.+.-|..||...++.++.++.++|-++-..+. ..+|+ .-.+.+.|-+++++.+.|+.+...|+++|+.|=
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~--~~l~~-------~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LL 103 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRAD--SDLRM-------MVLERHLDVFINALSQENEKVTIKALRALGYLV 103 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSC--HHHHH-------HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc--ccccH-------HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 367889999999999999999999999875542 22332 223567888999999999999999999999887
Q ss_pred hchhhHh---hccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHH
Q 037612 525 RTFKATE---TRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALV 601 (663)
Q Consensus 525 ~~~~~~e---~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~ 601 (663)
.+.+-.+ .+.+..|++++.++++-...||+..|+++-... -++- -+..|.+|+.+.+..+|..|+.
T Consensus 104 e~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~------~~~~-----V~~~l~sLl~Skd~~vK~agl~ 172 (265)
T 3b2a_A 104 KDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLE------DSKL-----VRTYINELVVSPDLYTKVAGFC 172 (265)
T ss_dssp TTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSC------CCHH-----HHHHHHHHHTCSSHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCccc------chHH-----HHHHHHHHHhCCChhHHHHHHH
Confidence 6544433 367999999999999999999999999993221 1222 3457889998889989999999
Q ss_pred HHHHHhcCCCChH
Q 037612 602 LLCYIALHVPDSE 614 (663)
Q Consensus 602 ~L~~la~~~~~~~ 614 (663)
+|.+++...+|.+
T Consensus 173 ~L~eia~~S~D~~ 185 (265)
T 3b2a_A 173 LFLNMLNSSADSG 185 (265)
T ss_dssp HHHHHGGGCSSCC
T ss_pred HHHHhhcccCCHH
Confidence 9999998777643
No 73
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.17 E-value=0.052 Score=59.77 Aligned_cols=132 Identities=18% Similarity=0.114 Sum_probs=93.9
Q ss_pred HHHHHhccCC-CHHHHHHHHHHHHHhhcCChhhHHHHHhcCC--hHHHHHhhcc---------------C--ChHHHHHH
Q 037612 150 EQVAILYTAG-SLEHKSDAAASLVSLARDNDRYGKLIIEEGG--VGPLLKLVKE---------------G--KPEGQENA 209 (663)
Q Consensus 150 ~li~~L~~~G-~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~--Ip~Lv~LL~s---------------g--~~~~q~~A 209 (663)
.++..|+. . +.....-++.+|..|.+. +.+|..+.+.++ +|+++.++.. + ....|.++
T Consensus 171 ~~~~~L~~-~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ 248 (480)
T 1ho8_A 171 NLINILQN-IEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHS 248 (480)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHH
T ss_pred HHHHHhcc-ccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHH
Confidence 35666765 4 344455678888888876 889999987643 8888766541 1 25678999
Q ss_pred HHHHHHhcCCCcchHHHHHcCch--HHHHHhhcc-CChhHHHHHHHHHHHHhcCChh-----HHHHHHhCCcHHHHHHHh
Q 037612 210 ARAIGLLGRDPESVEHMIHSGVC--LVFAKILKE-GPMKVQAVVAWAVSELAGNYPK-----CQDLFAQHNIIRLLVGHL 281 (663)
Q Consensus 210 a~AL~nLs~~~~~~~~iv~aGaI--p~Lv~lL~s-~~~~vq~~Aa~aL~nLA~~~~~-----~r~~i~~~g~I~~LV~LL 281 (663)
.-+++-|+-+++....+...+.+ +.|+++++. ..+.+-..+..+|.||....+. ..+.+...++ ++++..|
T Consensus 249 ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L 327 (480)
T 1ho8_A 249 LLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSL 327 (480)
T ss_dssp HHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHH
Confidence 99999999988888888888754 778888876 5688888999999999975421 1223333444 5566766
Q ss_pred ccC
Q 037612 282 AFE 284 (663)
Q Consensus 282 ~sg 284 (663)
...
T Consensus 328 ~~r 330 (480)
T 1ho8_A 328 SER 330 (480)
T ss_dssp HSS
T ss_pred hhC
Confidence 544
No 74
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.15 E-value=0.0053 Score=61.56 Aligned_cols=173 Identities=17% Similarity=0.100 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhh-hccHHHHhhhcCCCCchhHhH
Q 037612 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVA-EKDAELRRSAFKPNAPACKAV 497 (663)
Q Consensus 419 lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a-~~~~~~rr~a~~~~~~a~~~v 497 (663)
+|.+|..+|..+-+.-+..-+...-...++-++.++++.++.+-.+|..+|--|-.+- =+.....+ +
T Consensus 49 vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~K------------l 116 (265)
T 3b2a_A 49 TRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLK------------A 116 (265)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHH------------H
T ss_pred HHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHH------------H
Confidence 5999999999999886666666677778999999999999999999999998774332 22223333 6
Q ss_pred HHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHH
Q 037612 498 VDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIIS 577 (663)
Q Consensus 498 v~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~ 577 (663)
.+.|..+++++++-+...++..+|.|..+. .-.+++.-|..|+.+.+.+++..+..+|.++++..+ .+++.+-|.
T Consensus 117 ~~aL~dlik~~~~il~~eaae~Lgklkv~~--~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~--D~~i~~~I~- 191 (265)
T 3b2a_A 117 AKTLVSLLESPDDMMRIETIDVLSKLQPLE--DSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA--DSGHLTLIL- 191 (265)
T ss_dssp HHHHHHHTTSCCHHHHHHHHHHHHHCCBSC--CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS--SCCCGGGTT-
T ss_pred HHHHHHHhcCCCchHHHHHHHHhCcCCccc--chHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC--CHHHHHHHH-
Confidence 788999999989999999999999993222 124688899999999999999999999999985322 134444433
Q ss_pred cCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCCh
Q 037612 578 AGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPDS 613 (663)
Q Consensus 578 ~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~~ 613 (663)
.+| -.||.+.|+.++..|+..|-.+. +.|-.
T Consensus 192 -~eI---~elL~~eD~~l~e~aLd~Le~il-s~pi~ 222 (265)
T 3b2a_A 192 -DEI---PSLLQNDNEFIVELALDVLEKAL-SFPLL 222 (265)
T ss_dssp -TTH---HHHHTCSCHHHHHHHHHHHHHHT-TSCCC
T ss_pred -HHH---HHHHcCCCHHHHHHHHHHHHHHH-cCccc
Confidence 344 45678889988999999998883 44443
No 75
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.12 E-value=0.18 Score=48.84 Aligned_cols=157 Identities=15% Similarity=0.203 Sum_probs=111.5
Q ss_pred HHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHH
Q 037612 422 MAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQL 501 (663)
Q Consensus 422 ~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL 501 (663)
.-|+|++.+|.-+++..+. .++.+..=.+-|++.++.|-+.+|-+|+.. ||++- ..++.-+
T Consensus 89 eIa~a~G~la~i~Pe~v~~-----vVp~lfanyrigd~kikIn~~yaLeeIara---nP~l~-----------~~v~rdi 149 (253)
T 2db0_A 89 EIAKAFGQMAKEKPELVKS-----MIPVLFANYRIGDEKTKINVSYALEEIAKA---NPMLM-----------ASIVRDF 149 (253)
T ss_dssp HHHHHHHHHHHHCHHHHHH-----HHHHHHHHSCCCSHHHHHHHHHHHHHHHHH---CHHHH-----------HHHHHHH
T ss_pred HHHHHHhHHHHhCHHHHHh-----hHHHHHHHHhcCCccceecHHHHHHHHHHh---ChHHH-----------HHHHHHH
Confidence 3468889888877766543 456666667789999999999999999644 66654 3577889
Q ss_pred HHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCH
Q 037612 502 FRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGA 581 (663)
Q Consensus 502 ~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi 581 (663)
..++++.+..-+..+..=|+.+..+....-+-.+|-|..||.+++.-|+..|+.+|.++|... +.-.+.|.
T Consensus 150 ~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~n----pklRkii~----- 220 (253)
T 2db0_A 150 MSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLN----DKLRKVVI----- 220 (253)
T ss_dssp HHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC----HHHHHHHH-----
T ss_pred HHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcC----HHHHHHHH-----
Confidence 999998886666666666666665544333456999999999999999999999999999653 33233322
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHh
Q 037612 582 KHLVQLVYFGEQIVQLSALVLLCYIA 607 (663)
Q Consensus 582 ~~Lv~LL~~~~~~~q~~Al~~L~~la 607 (663)
--++=+...+..+|...-.+|..++
T Consensus 221 -~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 221 -KRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp -HHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred -HHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 1223344455556766666666664
No 76
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.00 E-value=0.0057 Score=60.66 Aligned_cols=127 Identities=18% Similarity=0.154 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhH
Q 037612 418 YMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAV 497 (663)
Q Consensus 418 ~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~v 497 (663)
.++..|+.+|+.|+.+-...-.. .-...++++...+...+..++..++.||.++..... ...+
T Consensus 72 ~V~~~a~~~l~~la~~l~~~~~~-~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----------------~~~l 134 (242)
T 2qk2_A 72 VLVAMAGKCLALLAKGLAKRFSN-YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----------------LEAQ 134 (242)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGHH-HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----------------HHHH
Confidence 45788999999999743221111 223467788888888899999999999998854221 1347
Q ss_pred HHHHHHHhhhcCcchhhHHHHHHHHhhhchhhH------hhccHHHHHHhcccCCHHHHHHHHHHHHhcc
Q 037612 498 VDQLFRIIEKADSDLLIPCIKAVGNLARTFKAT------ETRMIVPLVKLLDEREAEVSREASIALTKFA 561 (663)
Q Consensus 498 v~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~------e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la 561 (663)
++.|...+++.++.++..++..|+.+...+... -..++|.|+.+|.+.+.+|+..|..+|+.++
T Consensus 135 l~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 135 QESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 788889999888999999999999976554211 1358999999999999999999999999986
No 77
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.012 Score=59.30 Aligned_cols=186 Identities=8% Similarity=0.099 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHH-HhcCChhhhHHHhh-hccHHHHHHHh-hcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchh
Q 037612 418 YMKAMAARALWH-LAKGNSPICRSITE-SRALLCFAVLL-EKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPAC 494 (663)
Q Consensus 418 ~lk~~Aa~AL~~-La~gn~~~~~~I~e-sgal~~L~~LL-~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~ 494 (663)
+.+..|..+|.. +..|++.......+ ...+..|.+.+ +..+..++..|+.+|..|+.+- +...|.. +-.
T Consensus 31 ~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l------~~~~f~~--~y~ 102 (249)
T 2qk1_A 31 KDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKL------KTPGFSK--DYV 102 (249)
T ss_dssp HHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH------CTTTSCH--HHH
T ss_pred HHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc------ccccccH--HHH
Confidence 346778889999 88764432200011 23466788888 6788899999999999997433 2011220 334
Q ss_pred HhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhH-----hhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCCh
Q 037612 495 KAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKAT-----ETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHS 569 (663)
Q Consensus 495 ~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~-----e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~ 569 (663)
..+++.|+..+.+..+.++..+..|+-++....... =..+++.|+..|++.++.+++++...|..++..... .+
T Consensus 103 ~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~-~~ 181 (249)
T 2qk1_A 103 SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD-GY 181 (249)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS-CS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC-cc
Confidence 567888888888777888888888888887754210 114788999999999999999999999999743210 00
Q ss_pred hhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCC
Q 037612 570 DHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPD 612 (663)
Q Consensus 570 ~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~ 612 (663)
+.-..-+...-++.|+.++...++.++..|..+|..++..+++
T Consensus 182 ~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 182 STLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 1111111245778999999888888888899999888777775
No 78
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.83 E-value=0.062 Score=57.29 Aligned_cols=270 Identities=13% Similarity=0.105 Sum_probs=158.5
Q ss_pred HHHHHHHHHhhcCChhh-HHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCC
Q 037612 165 SDAAASLVSLARDNDRY-GKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGP 243 (663)
Q Consensus 165 ~~AA~~L~~La~~~~~~-~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~ 243 (663)
.++...+.++....+.. .... ...-+..++++.+.+...++-.--.+.+++..++-.- + ++..|.+=+++++
T Consensus 45 ~~~l~kll~l~~~G~~f~~~e~--t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~i-L----v~Nsl~kDl~~~N 117 (355)
T 3tjz_B 45 AHILTKILYLINQGEHLGTTEA--TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVI-I----VTSSLTKDMTGKE 117 (355)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHH--HHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGG-G----GHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHCCCCCchhHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHH-H----HHHHHHhhcCCCc
Confidence 44555555554332321 1111 1345677899999999999999899999987643321 2 7889999999999
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccCccchhhhHHHhhhhhhHHHHHHhhcccCccccCCCCCcc
Q 037612 244 MKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIVSKATSIHAVVVASNKTNNANANGSNNKV 323 (663)
Q Consensus 244 ~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sgt~~~~s~~~v~~~~~sl~~lv~~~~~~~~~~~~~~~~~~ 323 (663)
+-++..|..+|+++... + .++.+...++.. ++
T Consensus 118 ~~iR~lALRtL~~I~~~--~---------m~~~l~~~lk~~-------------------L~------------------ 149 (355)
T 3tjz_B 118 DSYRGPAVRALCQITDS--T---------MLQAIERYMKQA-------------------IV------------------ 149 (355)
T ss_dssp HHHHHHHHHHHHHHCCT--T---------THHHHHHHHHHH-------------------HT------------------
T ss_pred HhHHHHHHHHHhcCCCH--H---------HHHHHHHHHHHH-------------------cC------------------
Confidence 99999999999999742 2 334444433210 00
Q ss_pred ccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCccccccCCCccccccccccccccccccCC
Q 037612 324 IDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTDVKSNGQDNNVKQNHQSQHQHGLSNYGA 403 (663)
Q Consensus 324 i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~ 403 (663)
T Consensus 150 -------------------------------------------------------------------------------- 149 (355)
T 3tjz_B 150 -------------------------------------------------------------------------------- 149 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHH
Q 037612 404 NTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELR 483 (663)
Q Consensus 404 ~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~r 483 (663)
..+| +++..|+-+.++|...+++..+ +-+.-+-.++.+.++.|+++|..+|.+|... +.
T Consensus 150 ------d~~p----yVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~---d~--- 208 (355)
T 3tjz_B 150 ------DKVP----SVSSSALVSSLHLLKCSFDVVK-----RWVNEAQEAASSDNIMVQYHALGLLYHVRKN---DR--- 208 (355)
T ss_dssp ------CSSH----HHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT---CH---
T ss_pred ------CCCH----HHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHHhcCCCccHHHHHHHHHHHHHhh---ch---
Confidence 0022 3466777788888876666543 4566777888899999999999999998632 11
Q ss_pred hhhcCCCCchhHhHHHHHHHHhhhc---CcchhhHHHHHHHHhhhch-hhHhhccHHHHHHhcccCCHHHHHHHHHHHHh
Q 037612 484 RSAFKPNAPACKAVVDQLFRIIEKA---DSDLLIPCIKAVGNLARTF-KATETRMIVPLVKLLDEREAEVSREASIALTK 559 (663)
Q Consensus 484 r~a~~~~~~a~~~vv~qL~~ll~~~---~~~l~~~a~~aLg~La~~~-~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~ 559 (663)
..+..|+.-+..+ ++-.+..-++.++.+...- ......++..|...|++.++-|.-||+.++..
T Consensus 209 ------------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~ 276 (355)
T 3tjz_B 209 ------------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVN 276 (355)
T ss_dssp ------------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC
T ss_pred ------------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Confidence 1223344333332 1223333344443333322 11124578888999999999999999999999
Q ss_pred cccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCC
Q 037612 560 FACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVP 611 (663)
Q Consensus 560 la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~ 611 (663)
+..... .+. .-++.+|..+|.++++.+|--|+..|-.++...|
T Consensus 277 l~~~~~--------~~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P 319 (355)
T 3tjz_B 277 LPGCSA--------KEL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP 319 (355)
T ss_dssp --------------------CCCTHHHHHHSSSSSSHHHHHHCC--------
T ss_pred ccCCCH--------HHH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc
Confidence 853211 111 3457788888999998888888887766654444
No 79
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.60 E-value=0.049 Score=54.85 Aligned_cols=184 Identities=11% Similarity=0.116 Sum_probs=118.5
Q ss_pred HHHHhhcCChhHHHHHHHHHHH-HhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHh-hhcCcchhhHHHHHHHHhhhch
Q 037612 450 FAVLLEKGPEDVQYNSAMALME-ITAVAEKDAELRRSAFKPNAPACKAVVDQLFRII-EKADSDLLIPCIKAVGNLARTF 527 (663)
Q Consensus 450 L~~LL~~~~~~vq~~aa~AL~~-i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll-~~~~~~l~~~a~~aLg~La~~~ 527 (663)
|...+++.+-.-+..+..+|.. +..+.. + +.+...-...+++.|.+.+ .+.+..+...|+.+|+.|+..+
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~---~-----i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l 92 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTK---K-----LKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKL 92 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCC---C-----BCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCC---c-----cccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 4555677788888888888877 643311 1 1110111134577788888 5666788899999999999877
Q ss_pred h-h-----HhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCC--CCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHH
Q 037612 528 K-A-----TETRMIVPLVKLLDEREAEVSREASIALTKFACSD--NYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSA 599 (663)
Q Consensus 528 ~-~-----~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~--~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~A 599 (663)
. . --..++|+++..+.+..+.|+..+..||.+++..- +..+. .-.. -++.|...|.+..+.+++.+
T Consensus 93 ~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~-~l~~-----ll~~l~~~l~~k~~~vk~~a 166 (249)
T 2qk1_A 93 KTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSG-RNED-----MLKDILEHMKHKTPQIRMEC 166 (249)
T ss_dssp CTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTC-TTHH-----HHHHHHHHTTCSSHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCC-cHHH-----HHHHHHHHHcCCChHHHHHH
Confidence 6 2 12347999999999999999999888888886321 10000 0111 45678888888888888899
Q ss_pred HHHHHHHhcCCCCh-HHHHh---ccchhhhhhccccccccccCCcHHHHHHHHHHH
Q 037612 600 LVLLCYIALHVPDS-EDLAQ---AEVLTVLEWTSKQSHMTQDETVDPLLQDAKSRL 651 (663)
Q Consensus 600 l~~L~~la~~~~~~-~~i~~---~~vl~~L~~~~~~~~~~q~~~~~~l~~~a~~~l 651 (663)
+.+|..++.+.+.. ..+.. ..++|.|...... .++.++.-+.+++..+
T Consensus 167 l~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D----~~~~VR~aA~~~l~~i 218 (249)
T 2qk1_A 167 TQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVND----TQPAIRTIGFESFAIL 218 (249)
T ss_dssp HHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTC----SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHH
Confidence 99999998777652 33222 3456666422211 1334666666655544
No 80
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.41 E-value=0.076 Score=56.60 Aligned_cols=165 Identities=13% Similarity=0.158 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhH
Q 037612 418 YMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAV 497 (663)
Q Consensus 418 ~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~v 497 (663)
+.+..-.+.|+-+..|.+--+.+.+ ......++++.+.+.++|+-.=.++++++...+ + +--+
T Consensus 43 kc~~~l~kll~l~~~G~~f~~~e~t--~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~---e------------~iLv 105 (355)
T 3tjz_B 43 KCAHILTKILYLINQGEHLGTTEAT--EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAE---D------------VIIV 105 (355)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHH--HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSS---C------------GGGG
T ss_pred HHHHHHHHHHHHHHCCCCCchhHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHH---H------------HHHH
Confidence 4555667778877778543333222 234455789999999999988888887764422 1 1136
Q ss_pred HHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHH
Q 037612 498 VDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIIS 577 (663)
Q Consensus 498 v~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~ 577 (663)
+..|.+=+.+.++-+...|+++|+++...--. ..+.+++.+.|.+++++|++.|+.+..++.... + .+++
T Consensus 106 ~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~--~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~----p----e~v~ 175 (355)
T 3tjz_B 106 TSSLTKDMTGKEDSYRGPAVRALCQITDSTML--QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCS----F----DVVK 175 (355)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC----H----HHHH
T ss_pred HHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC----H----HHHH
Confidence 77888888998999999999999999643221 136888888999999999999999999996321 2 2444
Q ss_pred cCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 037612 578 AGGAKHLVQLVYFGEQIVQLSALVLLCYIALHV 610 (663)
Q Consensus 578 ~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~ 610 (663)
+.+.-+-.++...++.+|.+|+.+|+.+..+.
T Consensus 176 -~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 176 -RWVNEAQEAASSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp -TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence 68899999999999999999999999987654
No 81
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=96.35 E-value=0.022 Score=59.98 Aligned_cols=135 Identities=15% Similarity=0.077 Sum_probs=107.9
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHH
Q 037612 147 LIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHM 226 (663)
Q Consensus 147 ~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~i 226 (663)
-+.+.+..|++ ++.+.+..|...|..+-..+.......++.+|+..|++...+++...|-.+.+||.+|-.+...-..|
T Consensus 119 ra~~iiekL~~-~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gv 197 (339)
T 3dad_A 119 RVNAILEKLYS-SSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGV 197 (339)
T ss_dssp HHHHHHHHHHH-CCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHhc-CCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccch
Confidence 34667899999 99999999999888833344667888999999999999999999999999999999999876666556
Q ss_pred H-HcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhC--------C--cHHHHHHHhc
Q 037612 227 I-HSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQH--------N--IIRLLVGHLA 282 (663)
Q Consensus 227 v-~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~--------g--~I~~LV~LL~ 282 (663)
+ ..-.|..++.++.+....|...|...|..++..++.....+.++ | -...||.+|.
T Consensus 198 vs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~ 264 (339)
T 3dad_A 198 VAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILE 264 (339)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHT
T ss_pred hCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHh
Confidence 6 45578888888888888899999999999987665444433321 1 2678999996
No 82
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.30 E-value=0.087 Score=63.15 Aligned_cols=126 Identities=14% Similarity=0.119 Sum_probs=80.8
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcc--hHH
Q 037612 148 IWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPES--VEH 225 (663)
Q Consensus 148 v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~--~~~ 225 (663)
+.+++..+.. .+...+..|+..|.++...+... ..+..+.+..|.+.+...+.. |.|..++..|+..... ...
T Consensus 16 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e 90 (986)
T 2iw3_A 16 LEELFQKLSV-ATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVE 90 (986)
T ss_dssp HHHHHHHHTT-CCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTH
T ss_pred HHHHHhhccc-cchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcc
Confidence 3445666777 66667778888888876542111 112236677888888764333 9999999999943221 112
Q ss_pred HHHcCchHHHHHhhccCChhHHHHHHHHHHHHhc-CChhHHHHHHhCCcHHHHHHHhcc
Q 037612 226 MIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAG-NYPKCQDLFAQHNIIRLLVGHLAF 283 (663)
Q Consensus 226 iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~-~~~~~r~~i~~~g~I~~LV~LL~s 283 (663)
-.--+.+|.+.+.+.+....|+..|..|+..|.. -+|+.- ..++|.|+.-|.+
T Consensus 91 ~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~ 144 (986)
T 2iw3_A 91 PYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVE 144 (986)
T ss_dssp HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhcc
Confidence 2222578888888877778898888877777764 244443 2356777777754
No 83
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=96.11 E-value=0.16 Score=53.48 Aligned_cols=92 Identities=13% Similarity=0.066 Sum_probs=74.0
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHH-hcCCCcchHHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHH
Q 037612 191 VGPLLKLVKEGKPEGQENAARAIGL-LGRDPESVEHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFA 269 (663)
Q Consensus 191 Ip~Lv~LL~sg~~~~q~~Aa~AL~n-Ls~~~~~~~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~ 269 (663)
+..+++-|.+++.+.++.|..-|.. ++.+.+.....+..+|+..|+++...++...+..+..|+.+|-.+ .....-+.
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~-v~Gm~gvv 198 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLF-VDGMLGVV 198 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhc-cccccchh
Confidence 3455666777888888888888887 667899999999999999999999999999999999999999874 45554444
Q ss_pred -hCCcHHHHHHHhcc
Q 037612 270 -QHNIIRLLVGHLAF 283 (663)
Q Consensus 270 -~~g~I~~LV~LL~s 283 (663)
+...|.-|+.++.+
T Consensus 199 s~~~fI~~lyslv~s 213 (339)
T 3dad_A 199 AHSDTIQWLYTLCAS 213 (339)
T ss_dssp HCHHHHHHHHHGGGC
T ss_pred CCHHHHHHHHHHHcC
Confidence 44567777777763
No 84
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=95.26 E-value=0.32 Score=47.19 Aligned_cols=115 Identities=17% Similarity=0.136 Sum_probs=87.2
Q ss_pred hHhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcch
Q 037612 144 ILCLIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESV 223 (663)
Q Consensus 144 i~~~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~ 223 (663)
++..|--+++-.+. |++..|.+-+.+|..+++.|+..-.- .+.-+..+|.+.+.. .-..||.-|+.-.+|.
T Consensus 105 v~~vVp~lfanyri-gd~kikIn~~yaLeeIaranP~l~~~-----v~rdi~smltskd~~---Dkl~aLnFi~alGen~ 175 (253)
T 2db0_A 105 VKSMIPVLFANYRI-GDEKTKINVSYALEEIAKANPMLMAS-----IVRDFMSMLSSKNRE---DKLTALNFIEAMGENS 175 (253)
T ss_dssp HHHHHHHHHHHSCC-CSHHHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHTSCSSHH---HHHHHHHHHHTCCTTT
T ss_pred HHhhHHHHHHHHhc-CCccceecHHHHHHHHHHhChHHHHH-----HHHHHHHHhcCCChH---HHHHHHHHHHHHhccC
Confidence 33444445667788 99999999999999999988864443 445677888876633 3345566666555554
Q ss_pred HHHHHcCchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHH
Q 037612 224 EHMIHSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLF 268 (663)
Q Consensus 224 ~~iv~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i 268 (663)
-+-+ .-.+|.|..+|.+++.-|+..|..+|.+||..+|..|..+
T Consensus 176 ~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii 219 (253)
T 2db0_A 176 FKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV 219 (253)
T ss_dssp HHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred cccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH
Confidence 4443 3589999999999999999999999999999888888765
No 85
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=94.99 E-value=5.4 Score=43.86 Aligned_cols=331 Identities=16% Similarity=0.157 Sum_probs=185.7
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhhcCCh---hhHHHHHhcCCh--HHHHHhhccCChHHHHHHHHHHHHhcC-CCc
Q 037612 148 IWEQVAILYTAGSLEHKSDAAASLVSLARDND---RYGKLIIEEGGV--GPLLKLVKEGKPEGQENAARAIGLLGR-DPE 221 (663)
Q Consensus 148 v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~---~~~~~Ive~G~I--p~Lv~LL~sg~~~~q~~Aa~AL~nLs~-~~~ 221 (663)
+..++..|+.....+.......-+..|..+++ .......+.... +++-.++..++.-.+..|...+..++. ...
T Consensus 79 ~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~~~ 158 (480)
T 1ho8_A 79 LIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLH 158 (480)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTTC
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccCCc
Confidence 44457777753577777777777777777654 222222333322 133334444445566666666666653 222
Q ss_pred chHHHHHcCchH--HHHHhhccC-ChhHHHHHHHHHHHHhcCChhHHHHHHhCCc--HHHHHHHhccCccchhhhHHHhh
Q 037612 222 SVEHMIHSGVCL--VFAKILKEG-PMKVQAVVAWAVSELAGNYPKCQDLFAQHNI--IRLLVGHLAFETVQEHSKYAIVS 296 (663)
Q Consensus 222 ~~~~iv~aGaIp--~Lv~lL~s~-~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~--I~~LV~LL~sgt~~~~s~~~v~~ 296 (663)
+...+ ...+. .+...|+.. +.+.+..++.+|..|.. .+++|..|.+.++ +|+++.+++.-. .+
T Consensus 159 ~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~---------~~ 226 (480)
T 1ho8_A 159 NVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRAT---------DS 226 (480)
T ss_dssp CHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHH---------C-
T ss_pred cHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhh---------cc
Confidence 11111 11222 456666653 34556778888888886 6799999876543 777777664210 00
Q ss_pred hhhhHHHHHHhhcccCccccCCCCCccccchhhhcccCCCCCCCCCCCccchhhHHhhhhhhcCCCcccccccccccCcc
Q 037612 297 KATSIHAVVVASNKTNNANANGSNNKVIDDEDKQYHSLIPHPMGNKTPSQMHNVVTNTMAMKVGTKPVQKQGNVINQGTD 376 (663)
Q Consensus 297 ~~~sl~~lv~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~q~~~ 376 (663)
+. +. .++ +
T Consensus 227 ~~-~~-~~~--------------------------------------------------~-------------------- 234 (480)
T 1ho8_A 227 QL-AT-RIV--------------------------------------------------A-------------------- 234 (480)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cc-cc-ccc--------------------------------------------------c--------------------
Confidence 00 00 000 0
Q ss_pred ccccCCCccccccccccccccccccCCcCCCCccCChhHHHHHHHHHHHHHHHHhcCChhhhHHHhhhccH--HHHHHHh
Q 037612 377 VKSNGQDNNVKQNHQSQHQHGLSNYGANTKGRELEDPATKAYMKAMAARALWHLAKGNSPICRSITESRAL--LCFAVLL 454 (663)
Q Consensus 377 ~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~re~~d~~~~~~lk~~Aa~AL~~La~gn~~~~~~I~esgal--~~L~~LL 454 (663)
.++++. -.+++=.+...+|-|+. ++..+..+.+.+.. +.|+.++
T Consensus 235 ~~~~~~---------------------------------~~Ql~Y~~ll~iWlLSF-~~~~~~~l~~~~i~~~~~L~~i~ 280 (480)
T 1ho8_A 235 TNSNHL---------------------------------GIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLV 280 (480)
T ss_dssp ----CC---------------------------------HHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH
T ss_pred ccCCCc---------------------------------cHHHHHHHHHHHHHHHc-CHHHHHHHHhcchHHHHHHHHHH
Confidence 000000 13567788899999999 45677777766633 4555556
Q ss_pred h-cCChhHHHHHHHHHHHHhhhhhc-cHHHHhhhcCCCCchh-HhHHHHHHHHhhhc--CcchhhHHHHHHHH-hhh---
Q 037612 455 E-KGPEDVQYNSAMALMEITAVAEK-DAELRRSAFKPNAPAC-KAVVDQLFRIIEKA--DSDLLIPCIKAVGN-LAR--- 525 (663)
Q Consensus 455 ~-~~~~~vq~~aa~AL~~i~a~a~~-~~~~rr~a~~~~~~a~-~~vv~qL~~ll~~~--~~~l~~~a~~aLg~-La~--- 525 (663)
+ +..+.|-.-+..+|.|+...... ....-.. ... ..+ .+++..+... +|+-...-+..|.. |..
T Consensus 281 k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~------~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~ 353 (480)
T 1ho8_A 281 KITIKEKVSRLCISIILQCCSTRVKQHKKVIKQ------LLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQ 353 (480)
T ss_dssp HHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHH------HHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccchhHHHHHHHHHHHhcccchhhhhHHHH------HHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 5 45678888888999998643310 1111110 000 111 2344444432 23222222222211 111
Q ss_pred ---chh-------------------------------hHhhccHHHHHHhccc----------CCHHHHHHHHHHHHhcc
Q 037612 526 ---TFK-------------------------------ATETRMIVPLVKLLDE----------REAEVSREASIALTKFA 561 (663)
Q Consensus 526 ---~~~-------------------------------~~e~~~I~pLV~LL~~----------~~~~v~~eAa~AL~~la 561 (663)
+|. ..+-.++.-|+++|++ .++.+..-|+.=|+.|+
T Consensus 354 ~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefv 433 (480)
T 1ho8_A 354 ELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVV 433 (480)
T ss_dssp TCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHH
Confidence 111 0111369999999973 46777777888899997
Q ss_pred cCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 037612 562 CSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIA 607 (663)
Q Consensus 562 ~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la 607 (663)
. ++|+..+.+-+.||-..+++|+.++++.++-+|+.++--+-
T Consensus 434 r----~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 434 E----LLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp H----HCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred H----HCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3 25666667778888888889999999999999999886553
No 86
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=92.23 E-value=2.5 Score=50.29 Aligned_cols=103 Identities=12% Similarity=0.136 Sum_probs=58.3
Q ss_pred HHHHHHHhhcCC---h--hHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhc-----CcchhhHH
Q 037612 447 LLCFAVLLEKGP---E--DVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKA-----DSDLLIPC 516 (663)
Q Consensus 447 l~~L~~LL~~~~---~--~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~-----~~~l~~~a 516 (663)
+..|..+++... . .....+..||+.+....++ .|. |-+..+++.|...+... ++.+...+
T Consensus 550 l~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~-------~~~---p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~ 619 (960)
T 1wa5_C 550 LKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSED-------SIQ---PLFPQLLAQFIEIVTIMAKNPSNPRFTHYT 619 (960)
T ss_dssp HHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTT-------TTG---GGHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHH-------hhh---hHHHHHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 335556666541 1 1234566666666433321 122 44556777777666542 23455668
Q ss_pred HHHHHHhhhch-----hhHhhccHHHHHHhcccCCHHHHHHHHHHHHh
Q 037612 517 IKAVGNLARTF-----KATETRMIVPLVKLLDEREAEVSREASIALTK 559 (663)
Q Consensus 517 ~~aLg~La~~~-----~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~ 559 (663)
+.+|+.+++.. ..-+..++|++...|++...+...++...+..
T Consensus 620 ~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~ 667 (960)
T 1wa5_C 620 FESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAF 667 (960)
T ss_dssp HHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHH
Confidence 88888888751 11234678999999976655555554444433
No 87
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=89.58 E-value=23 Score=41.69 Aligned_cols=55 Identities=7% Similarity=-0.028 Sum_probs=36.4
Q ss_pred CChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhh---c--cCChhHHHHHHHHHHHHhc
Q 037612 201 GKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKIL---K--EGPMKVQAVVAWAVSELAG 259 (663)
Q Consensus 201 g~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL---~--s~~~~vq~~Aa~aL~nLA~ 259 (663)
.+...++.|..+++.++....... ...++.++.++ . ++++.++..++|+|+.++.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~ 535 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCN 535 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHH
Confidence 356688999999999985322111 13445555544 2 3478999999999999884
No 88
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=89.26 E-value=2.8 Score=41.99 Aligned_cols=128 Identities=13% Similarity=0.110 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHhcCChhh--hHHH---hhhccHHHHH-HHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCC
Q 037612 418 YMKAMAARALWHLAKGNSPI--CRSI---TESRALLCFA-VLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNA 491 (663)
Q Consensus 418 ~lk~~Aa~AL~~La~gn~~~--~~~I---~esgal~~L~-~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~ 491 (663)
.++..|..+|..++.+.... .... .-...++.|+ +.|.+....++..+..++..+......
T Consensus 70 ~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~------------- 136 (278)
T 4ffb_C 70 VAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS------------- 136 (278)
T ss_dssp HHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-------------
T ss_pred HHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-------------
Confidence 46777888888887642211 1111 1122233333 234456677888777777655422211
Q ss_pred chhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHh-------hccHHHHHHhcccCCHHHHHHHHHHHHhc
Q 037612 492 PACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATE-------TRMIVPLVKLLDEREAEVSREASIALTKF 560 (663)
Q Consensus 492 ~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e-------~~~I~pLV~LL~~~~~~v~~eAa~AL~~l 560 (663)
...+++.++..+.+.++.++..|+..|..+-..|.... ..+++.+..+|+++++.|+.+|...+..+
T Consensus 137 --~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~l 210 (278)
T 4ffb_C 137 --ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEI 210 (278)
T ss_dssp --SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 12355667777778889999999888888877765422 12566788889999999999999888777
No 89
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=88.27 E-value=0.17 Score=51.04 Aligned_cols=64 Identities=16% Similarity=0.083 Sum_probs=48.1
Q ss_pred HhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchH
Q 037612 154 ILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCL 233 (663)
Q Consensus 154 ~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp 233 (663)
+++. .+.+.|..||..| ....|..|++..++.++..|+..| . .+
T Consensus 58 ll~d-~~~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L---~--------------~~ 101 (244)
T 1lrv_A 58 YLAD-PFWERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRL---P--------------RE 101 (244)
T ss_dssp GTTC-SSHHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTS---C--------------SG
T ss_pred HhcC-CCHHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHC---C--------------HH
Confidence 4567 7888888888753 133477888888899999988653 1 24
Q ss_pred HHHHhhccCChhHHHHHHHH
Q 037612 234 VFAKILKEGPMKVQAVVAWA 253 (663)
Q Consensus 234 ~Lv~lL~s~~~~vq~~Aa~a 253 (663)
.|..++++++..|+..++..
T Consensus 102 ~L~~ll~D~d~~VR~~aA~~ 121 (244)
T 1lrv_A 102 QLSALMFDEDREVRITVADR 121 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHh
Confidence 68888899999999988874
No 90
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=88.02 E-value=47 Score=38.90 Aligned_cols=92 Identities=15% Similarity=0.092 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhh---ccCChHHHHHHHHHHHHhcCC-CcchHHHHHcCchHH
Q 037612 159 GSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLV---KEGKPEGQENAARAIGLLGRD-PESVEHMIHSGVCLV 234 (663)
Q Consensus 159 G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL---~sg~~~~q~~Aa~AL~nLs~~-~~~~~~iv~aGaIp~ 234 (663)
.+...++.|..+++.++..-.... ...++.++..| .++++.++..+.++|+..+.. ..+. .. -...++.
T Consensus 461 ~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~-l~~vl~~ 533 (963)
T 2x19_B 461 YSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VM-INSVLPL 533 (963)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HH-HTTTHHH
T ss_pred CchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HH-HHHHHHH
Confidence 477888889999999986533211 12234444433 234688999999999999853 2222 22 2468888
Q ss_pred HHHhhccCChhHHHHHHHHHHHHhc
Q 037612 235 FAKILKEGPMKVQAVVAWAVSELAG 259 (663)
Q Consensus 235 Lv~lL~s~~~~vq~~Aa~aL~nLA~ 259 (663)
|++.|.+ +.|+..|++++.+++.
T Consensus 534 l~~~l~~--~~V~~~A~~al~~l~~ 556 (963)
T 2x19_B 534 VLHALGN--PELSVSSVSTLKKICR 556 (963)
T ss_dssp HHHHTTC--GGGHHHHHHHHHHHHH
T ss_pred HHHHhCC--chHHHHHHHHHHHHHH
Confidence 8888865 7899999999999995
No 91
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=82.44 E-value=12 Score=44.46 Aligned_cols=179 Identities=7% Similarity=0.091 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCChhHHHHHHHHHHHHhhhhh----ccHHHHhhhcCCCCch
Q 037612 418 YMKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGPEDVQYNSAMALMEITAVAE----KDAELRRSAFKPNAPA 493 (663)
Q Consensus 418 ~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~----~~~~~rr~a~~~~~~a 493 (663)
.++..|+++|+.++.-- ... .-...++.++..|.+.+..|+.+||+||.+++...+ ..++..+..+ .|-
T Consensus 473 ~vr~~a~~~lg~~~~~~---~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l---~p~ 545 (960)
T 1wa5_C 473 ILRVDAIKYIYTFRNQL---TKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDI---SNS 545 (960)
T ss_dssp HHHHHHHHHHHHTGGGS---CHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGT---TTT
T ss_pred eehHHHHHHHHHHHhhC---CHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHh---hhh
Confidence 46999999999998742 111 234456677778887788899999999999875321 0011111112 244
Q ss_pred hHhHHHHHHHHhhhcC-----cchhhHHHHHHHHhhhchhhHh----hccHHHHHHhccc-----CCHHHHHHHHHHHHh
Q 037612 494 CKAVVDQLFRIIEKAD-----SDLLIPCIKAVGNLARTFKATE----TRMIVPLVKLLDE-----REAEVSREASIALTK 559 (663)
Q Consensus 494 ~~~vv~qL~~ll~~~~-----~~l~~~a~~aLg~La~~~~~~e----~~~I~pLV~LL~~-----~~~~v~~eAa~AL~~ 559 (663)
...+++.|+.++.... ......+..+|+.++..+...- ..++++|+..+.. .+.........+|+.
T Consensus 546 l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~ 625 (960)
T 1wa5_C 546 TEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGA 625 (960)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 5667888888888751 1234677788887776554211 1345666666632 355566566777777
Q ss_pred cccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 037612 560 FACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIA 607 (663)
Q Consensus 560 la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la 607 (663)
++... .++....+ ..--++++...|.........++...++.+.
T Consensus 626 l~~~~---~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 626 ILNYT---QRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHTS---CGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHhcC---CcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 76431 12333332 3345577777776553334555666666554
No 92
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=79.70 E-value=50 Score=39.59 Aligned_cols=125 Identities=14% Similarity=0.083 Sum_probs=82.9
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC-ChHHHHHHHHHHHHhcCCCcchHHHHHc
Q 037612 151 QVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEG-KPEGQENAARAIGLLGRDPESVEHMIHS 229 (663)
Q Consensus 151 li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg-~~~~q~~Aa~AL~nLs~~~~~~~~iv~a 229 (663)
++..+-. -...+|..|..++..+...-+.+.. ...+|.|++.|+++ .-..+..|...|..|+......-..-=-
T Consensus 100 ~~~~~~d-k~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~ 174 (986)
T 2iw3_A 100 ICTNAGN-KDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMP 174 (986)
T ss_dssp HHHHTTC-SSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHhcC-CchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhcc
Confidence 3444434 3567887766666665543222222 34699999999876 5789999999999999633222222223
Q ss_pred CchHHHHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccC
Q 037612 230 GVCLVFAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFE 284 (663)
Q Consensus 230 GaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sg 284 (663)
..||.+-+..-+-.++|+..|-.++..++..- .+++. +..||.||+-+...
T Consensus 175 ~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~-~n~d~---~~~~~~~~~~~~~p 225 (986)
T 2iw3_A 175 ELIPVLSETMWDTKKEVKAAATAAMTKATETV-DNKDI---ERFIPSLIQCIADP 225 (986)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGC-CCTTT---GGGHHHHHHHHHCT
T ss_pred chhcchHhhcccCcHHHHHHHHHHHHHHHhcC-CCcch---hhhHHHHHHHhcCh
Confidence 47888888888888999999999999998621 12222 24678888877643
No 93
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=79.28 E-value=2 Score=51.86 Aligned_cols=106 Identities=16% Similarity=0.133 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhcc--C---ChHHHHHHHHHHHHhcCCCcchHHHHHcCchHH
Q 037612 160 SLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKE--G---KPEGQENAARAIGLLGRDPESVEHMIHSGVCLV 234 (663)
Q Consensus 160 ~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~s--g---~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~ 234 (663)
+...++.+.+++++++..-+.....-.=..++|.|+.++.. + .+.++..++|+|+..+.--....... ...+..
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L-~~vl~~ 544 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVILK 544 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH-HHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH-HHHHHH
Confidence 67889999999999986543321111113478899998863 2 23445567788887774211112221 123444
Q ss_pred HHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHH
Q 037612 235 FAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFA 269 (663)
Q Consensus 235 Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~ 269 (663)
|++-+.+..+.++..|++|+.+|+. +++..+.
T Consensus 545 L~~~l~~~~~~v~~~A~~al~~l~~---~c~~~l~ 576 (1023)
T 4hat_C 545 LFEFMHETHEGVQDMACDTFIKIVQ---KCKYHFV 576 (1023)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHH---HHTHHHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHH---HHHHHhh
Confidence 4555555668899999999999995 5666554
No 94
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=78.48 E-value=19 Score=36.01 Aligned_cols=129 Identities=16% Similarity=0.094 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHH-Hhhc-CChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhH
Q 037612 418 YMKAMAARALWHLAKGNSPICRSITESRALLCFAV-LLEK-GPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACK 495 (663)
Q Consensus 418 ~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~-LL~~-~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~ 495 (663)
+.+--|+..|+.+ . ... .+.++++ .+.. ..=.|++.+++++.+++.... +.
T Consensus 86 eVR~~Av~lLg~~-~---------~~~-~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~-----------pe----- 138 (240)
T 3l9t_A 86 QVRMYAVFLFGYL-S---------KDK-EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIE-----------YK----- 138 (240)
T ss_dssp HHHHHHHHHHHHT-T---------TSH-HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHC-----------TT-----
T ss_pred HHHHHHHHHHHhc-c---------CcH-HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcC-----------HH-----
Confidence 4677788888766 2 111 2344443 2333 333899999999998874221 11
Q ss_pred hHHHHHHHHhhhcCcchhhHHHHHH--HHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHH
Q 037612 496 AVVDQLFRIIEKADSDLLIPCIKAV--GNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSK 573 (663)
Q Consensus 496 ~vv~qL~~ll~~~~~~l~~~a~~aL--g~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~ 573 (663)
..++.+.+...+.+..+...|+..+ ++.-..|...-..++|-|-.+.++.++.|++..+|+|..++-+ +++-..
T Consensus 139 ~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~----~Pd~V~ 214 (240)
T 3l9t_A 139 KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK----FPDLVK 214 (240)
T ss_dssp TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT----CHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh----CHHHHH
Confidence 1356677888888888888887665 2211222222234677777788999999999999999999744 356555
Q ss_pred HHHH
Q 037612 574 AIIS 577 (663)
Q Consensus 574 ~Iv~ 577 (663)
.+++
T Consensus 215 ~~~~ 218 (240)
T 3l9t_A 215 IELK 218 (240)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 95
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=78.11 E-value=8.7 Score=46.33 Aligned_cols=134 Identities=8% Similarity=-0.007 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhcCC-----hhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCch
Q 037612 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEKGP-----EDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPA 493 (663)
Q Consensus 419 lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~~~-----~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a 493 (663)
-.+.+..|++.++.|-......-.-...++.|..|++... .-++..++|+|..++.--..+++.-
T Consensus 469 ~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L---------- 538 (1023)
T 4hat_C 469 NINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL---------- 538 (1023)
T ss_dssp HHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH----------
T ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH----------
Confidence 4788899999999876555333344556778888887422 2344567799887765444444432
Q ss_pred hHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhh--------ccHHHHHHhc----ccCCHHHHHHHHHHHHhcc
Q 037612 494 CKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATET--------RMIVPLVKLL----DEREAEVSREASIALTKFA 561 (663)
Q Consensus 494 ~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~--------~~I~pLV~LL----~~~~~~v~~eAa~AL~~la 561 (663)
+.++..|++.+....+.++..||.|+.+|+...+..-. --++++++.+ +.-+......+..|++.+.
T Consensus 539 -~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi 617 (1023)
T 4hat_C 539 -RTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII 617 (1023)
T ss_dssp -HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34667777777655678999999999999986543211 1366666555 3356666777888888876
Q ss_pred cC
Q 037612 562 CS 563 (663)
Q Consensus 562 ~~ 563 (663)
..
T Consensus 618 ~~ 619 (1023)
T 4hat_C 618 SE 619 (1023)
T ss_dssp TT
T ss_pred Hh
Confidence 43
No 96
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=77.01 E-value=12 Score=38.02 Aligned_cols=98 Identities=6% Similarity=0.116 Sum_probs=70.7
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhc
Q 037612 447 LLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLART 526 (663)
Q Consensus 447 l~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~ 526 (663)
+|+|+.=+-...+.++..+-..+..++.... ...+.+.++.-+++-+...+..|+.-++++=..
T Consensus 134 lP~LveKlGd~k~~vR~~~r~il~~l~~v~~----------------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 134 VPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG----------------PLKMTPMLLDALKSKNARQRSECLLVIEYYITN 197 (266)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC----------------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 5565554444455677665555544432211 123677888888888888999999999988776
Q ss_pred hhhHhhccH---HHHHHhcccCCHHHHHHHHHHHHhc
Q 037612 527 FKATETRMI---VPLVKLLDEREAEVSREASIALTKF 560 (663)
Q Consensus 527 ~~~~e~~~I---~pLV~LL~~~~~~v~~eAa~AL~~l 560 (663)
+.......+ |++..++++++..|+..|..++..+
T Consensus 198 ~G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 198 AGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVAC 234 (266)
T ss_dssp HCSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred cCCCccccccchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 665555689 9999999999999999999988755
No 97
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=72.07 E-value=14 Score=40.54 Aligned_cols=95 Identities=12% Similarity=0.134 Sum_probs=76.8
Q ss_pred ccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHH
Q 037612 156 YTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVF 235 (663)
Q Consensus 156 ~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~L 235 (663)
.. |+...|.-||.-+...-+.-+.... -+|..+++|.+..+..++..|.+.|..+|.+ ++..+| +..|
T Consensus 38 ~k-g~~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki-----aDvL 105 (507)
T 3u0r_A 38 VK-GGTKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV-----ADIL 105 (507)
T ss_dssp GG-SCHHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH-----HHHH
T ss_pred cC-CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH-----HHHH
Confidence 46 8999999999999888777666444 4688999999999999999999999999998 777666 4589
Q ss_pred HHhhccCChhHHHHHHHHHHHHhcCCh
Q 037612 236 AKILKEGPMKVQAVVAWAVSELAGNYP 262 (663)
Q Consensus 236 v~lL~s~~~~vq~~Aa~aL~nLA~~~~ 262 (663)
+++|.+.++.-...+-++|..|-..++
T Consensus 106 ~QlLqtdd~~E~~~V~~sL~sllk~Dp 132 (507)
T 3u0r_A 106 TQLLQTDDSAEFNLVNNALLSIFKMDA 132 (507)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHhccchHHHHHHHHHHHHHHhcCh
Confidence 999998886666666677776665443
No 98
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=70.90 E-value=14 Score=40.69 Aligned_cols=123 Identities=20% Similarity=0.202 Sum_probs=84.0
Q ss_pred cCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccH
Q 037612 456 KGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMI 535 (663)
Q Consensus 456 ~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I 535 (663)
+|++..|.-||.-|... -.+=|+++. ..++.+++|.++.|..++..|++.|..+++. .. -.+++
T Consensus 39 kg~~k~K~LaaQ~I~kf---fk~FP~l~~-----------~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~-i~kia 102 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKF---FKHFPELAD-----------SAINAQLDLCEDEDVSIRRQAIKELPQFATG-EN-LPRVA 102 (507)
T ss_dssp GSCHHHHHHHHHHHHHH---GGGCGGGHH-----------HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TC-HHHHH
T ss_pred CCCHHHHHHHHHHHHHH---HhhChhhHH-----------HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hh-hhhHH
Confidence 56778888888776543 333344443 3578889999999999999999999999987 22 35789
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHH
Q 037612 536 VPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYI 606 (663)
Q Consensus 536 ~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~l 606 (663)
.-|++||+..++.-...+-.+|..+...+ . .+-+..|..-+..+++.+.+..+..|+.-
T Consensus 103 DvL~QlLqtdd~~E~~~V~~sL~sllk~D-------p-----k~tl~~lf~~i~~~~e~~Rer~lkFi~~k 161 (507)
T 3u0r_A 103 DILTQLLQTDDSAEFNLVNNALLSIFKMD-------A-----KGTLGGLFSQILQGEDIVRERAIKFLSTK 161 (507)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHHHC-------H-----HHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhcC-------h-----HHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 99999999888777666777776664222 1 22334455544556666677666666533
No 99
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=69.06 E-value=40 Score=40.68 Aligned_cols=100 Identities=20% Similarity=0.192 Sum_probs=65.3
Q ss_pred HhHHHHHHHHhhhc----CcchhhHHHHHHHHhhhchhhHh----hccHHHHHHhc----ccCCHHHHHHHHHHHHhccc
Q 037612 495 KAVVDQLFRIIEKA----DSDLLIPCIKAVGNLARTFKATE----TRMIVPLVKLL----DEREAEVSREASIALTKFAC 562 (663)
Q Consensus 495 ~~vv~qL~~ll~~~----~~~l~~~a~~aLg~La~~~~~~e----~~~I~pLV~LL----~~~~~~v~~eAa~AL~~la~ 562 (663)
...++.+..+++++ ++.+...|+-++|+|.+.+|... ...|+++.++| ++++.+-..-+..||+|+..
T Consensus 390 ~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~ 469 (1056)
T 1lsh_A 390 RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ 469 (1056)
T ss_dssp HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC
Confidence 44666777777653 35577789999999999887532 23578887776 56677777889999999964
Q ss_pred CCCCCChhhHHHHHHcCCHHHHHHHHhc------C-ChhHHHHHHHHHHHHhcC
Q 037612 563 SDNYLHSDHSKAIISAGGAKHLVQLVYF------G-EQIVQLSALVLLCYIALH 609 (663)
Q Consensus 563 ~~~~~~~~~~~~Iv~~ggi~~Lv~LL~~------~-~~~~q~~Al~~L~~la~~ 609 (663)
.+ .++.|..++.. + ...++..|+.+|..++.+
T Consensus 470 p~---------------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~ 508 (1056)
T 1lsh_A 470 PN---------------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR 508 (1056)
T ss_dssp GG---------------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT
T ss_pred hh---------------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhh
Confidence 32 34555555431 1 223555577776666543
No 100
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=66.61 E-value=62 Score=31.93 Aligned_cols=187 Identities=11% Similarity=0.060 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHhcCChhhhHH---Hhhhc-cHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCch
Q 037612 418 YMKAMAARALWHLAKGNSPICRS---ITESR-ALLCFAVLLEKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPA 493 (663)
Q Consensus 418 ~lk~~Aa~AL~~La~gn~~~~~~---I~esg-al~~L~~LL~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a 493 (663)
+.+..|...|.++..++...... +..-+ ....|.+.+...+..++..++.+|..+..........+.. |. +.
T Consensus 24 K~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~-~~---~~ 99 (278)
T 4ffb_C 24 KARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAH-NI---TL 99 (278)
T ss_dssp HHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHH-HH---HH
T ss_pred HHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccch-hH---HH
Confidence 45677888887776654332211 11112 2335667777788899999999988775432211100100 00 11
Q ss_pred hHhHHHHHH-HHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccC-CCCCChhh
Q 037612 494 CKAVVDQLF-RIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACS-DNYLHSDH 571 (663)
Q Consensus 494 ~~~vv~qL~-~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~-~~~~~~~~ 571 (663)
+..+++.|+ +.+.+..+.++..+..++-.+....... ..++..++..+.+.++.++.++...|.++... +.. .-+
T Consensus 100 ~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~--~~~ 176 (278)
T 4ffb_C 100 ISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLT--NVN 176 (278)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTT--TCC
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCC--cCC
Confidence 122333333 2233333556666666665554321111 13567778888999999999988888776421 100 011
Q ss_pred HHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCC
Q 037612 572 SKAIISAGGAKHLVQLVYFGEQIVQLSALVLLCYIALHVPD 612 (663)
Q Consensus 572 ~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~la~~~~~ 612 (663)
.+..+. ..++.+..+|...++.+...|..++..+-...++
T Consensus 177 ~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 177 VQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp HHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred chhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 121111 2345677788889998888888888877666664
No 101
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=64.70 E-value=4.4 Score=40.59 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=14.7
Q ss_pred HHHHHhhcCChhHHHHHHHHH
Q 037612 449 CFAVLLEKGPEDVQYNSAMAL 469 (663)
Q Consensus 449 ~L~~LL~~~~~~vq~~aa~AL 469 (663)
.|..+++..+..|++.++..+
T Consensus 102 ~L~~ll~D~d~~VR~~aA~~l 122 (244)
T 1lrv_A 102 QLSALMFDEDREVRITVADRL 122 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHHHS
T ss_pred HHHHHHcCCCHHHHHHHHHhC
Confidence 456667777778887777653
No 102
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=64.54 E-value=94 Score=37.02 Aligned_cols=91 Identities=13% Similarity=0.047 Sum_probs=54.5
Q ss_pred HHHHHHHHhhhchhhHh---hccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHHHH--Hc----CCHHHHH
Q 037612 515 PCIKAVGNLARTFKATE---TRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKAII--SA----GGAKHLV 585 (663)
Q Consensus 515 ~a~~aLg~La~~~~~~e---~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~Iv--~~----ggi~~Lv 585 (663)
.++..+|..++-|.... ..+++.|+..|.+.++.|+..|++||.+|+..- ...++ .. .-++.++
T Consensus 519 ~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~-------~~~l~~~~~~~~~p~~~~il 591 (1049)
T 3m1i_C 519 DIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKC-------KYHFVIQQPRESEPFIQTII 591 (1049)
T ss_dssp HHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH-------THHHHSCCTTCSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-------HHHhhcccCCCCCcHHHHHH
Confidence 45566776666554422 235777777888889999999999999998321 11222 11 1133443
Q ss_pred H----HHhcCChhHHHHHHHHHHHHhcCCCC
Q 037612 586 Q----LVYFGEQIVQLSALVLLCYIALHVPD 612 (663)
Q Consensus 586 ~----LL~~~~~~~q~~Al~~L~~la~~~~~ 612 (663)
+ ++..-+...+.....++..++...++
T Consensus 592 ~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~ 622 (1049)
T 3m1i_C 592 RDIQKTTADLQPQQVHTFYKACGIIISEERS 622 (1049)
T ss_dssp HTHHHHHTTSCHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHcCCC
Confidence 3 33332333445577788888777764
No 103
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=63.87 E-value=46 Score=40.12 Aligned_cols=91 Identities=19% Similarity=0.302 Sum_probs=61.5
Q ss_pred HhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcc-------cCCHHHHHHHHHHHHhcccCCCCC
Q 037612 495 KAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLD-------EREAEVSREASIALTKFACSDNYL 567 (663)
Q Consensus 495 ~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~-------~~~~~v~~eAa~AL~~la~~~~~~ 567 (663)
+.+.+.|.+.++.++.+...-+++||||+.. ...|++|..+|. +....++.+|.+||.++++..
T Consensus 439 ~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~--- 509 (1056)
T 1lsh_A 439 QPLHDLLSQSSDRAKEEEIVLALKALGNAGQ------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD--- 509 (1056)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC---
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhccCC------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc---
Confidence 4455666677777777788999999999985 246888888884 235678999999999998642
Q ss_pred ChhhHHHHHHcCCHHHHHHHHhcC--ChhHHHHHHHHH
Q 037612 568 HSDHSKAIISAGGAKHLVQLVYFG--EQIVQLSALVLL 603 (663)
Q Consensus 568 ~~~~~~~Iv~~ggi~~Lv~LL~~~--~~~~q~~Al~~L 603 (663)
++.. -+.|+++.... ++.+.+.|+..|
T Consensus 510 -p~~v--------~~il~~i~~n~~e~~EvRiaA~~~L 538 (1056)
T 1lsh_A 510 -PRKV--------QEIVLPIFLNVAIKSELRIRSCIVF 538 (1056)
T ss_dssp -HHHH--------HHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred -hHHH--------HHHHHHHhcCCCCChHHHHHHHHHH
Confidence 2211 23567776443 333445455555
No 104
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=57.00 E-value=25 Score=34.48 Aligned_cols=108 Identities=16% Similarity=0.144 Sum_probs=73.2
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHhh---cCChhhHHHHHhcCChHHHHHhhcc----C-------ChHHHHHHHHHHHHh
Q 037612 151 QVAILYTAGSLEHKSDAAASLVSLA---RDNDRYGKLIIEEGGVGPLLKLVKE----G-------KPEGQENAARAIGLL 216 (663)
Q Consensus 151 li~~L~~~G~~e~k~~AA~~L~~La---~~~~~~~~~Ive~G~Ip~Lv~LL~s----g-------~~~~q~~Aa~AL~nL 216 (663)
+|..|+. +....+ -...|.+|- +.++..|..=...||+..|+++|.. + +...+.....||..|
T Consensus 5 yi~~L~~-~~~~~~--~~~~L~~L~v~Lrt~~~~Wv~~F~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkal 81 (233)
T 2f31_A 5 YIQELRS-GLRDMH--LLSCLESLRVSLNNNPVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 81 (233)
T ss_dssp HHHHHTT-TCCHHH--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-ccchHH--HHHHHHHHhHhHhcCCcHHHHHHHHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHH
Confidence 3667777 642222 122333321 2233333322257899999998863 1 246788999999999
Q ss_pred cCCCcchHHHH-HcCchHHHHHhhccCChhHHHHHHHHHHHHhcCC
Q 037612 217 GRDPESVEHMI-HSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNY 261 (663)
Q Consensus 217 s~~~~~~~~iv-~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~ 261 (663)
..+......++ ...+|..|+..|.+..+.++..+...|+.++..+
T Consensus 82 mn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~ 127 (233)
T 2f31_A 82 MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILP 127 (233)
T ss_dssp TSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCS
T ss_pred hCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCC
Confidence 98776666665 4678999999999999999999999999888643
No 105
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=56.95 E-value=60 Score=38.11 Aligned_cols=125 Identities=10% Similarity=0.017 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHh---h--cCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCch
Q 037612 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLL---E--KGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPA 493 (663)
Q Consensus 419 lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL---~--~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a 493 (663)
.++.|..+|+.++.|-.... ...++.++.++ . ...+-|+..++|+|..++..-..++ .-
T Consensus 480 ~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-----------~~ 543 (971)
T 2x1g_F 480 KLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-----------AY 543 (971)
T ss_dssp HHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC---------------C
T ss_pred HHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-----------HH
Confidence 47889999999998754322 12333333333 2 2478899999999987764322222 22
Q ss_pred hHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhh----ccHHHHHHhccc--CCHHHHHHHHHHHHhccc
Q 037612 494 CKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATET----RMIVPLVKLLDE--REAEVSREASIALTKFAC 562 (663)
Q Consensus 494 ~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~----~~I~pLV~LL~~--~~~~v~~eAa~AL~~la~ 562 (663)
...+++.|++.+ + +.++..|+.|+..+++..+..=. .++.-|..++++ -+.+.+..+..|++.++.
T Consensus 544 l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 544 IPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMS 615 (971)
T ss_dssp HHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence 345777788777 3 78999999999999976543212 234445566665 467888888888888864
No 106
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=55.07 E-value=85 Score=36.64 Aligned_cols=127 Identities=8% Similarity=0.043 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHh---hcCChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCchh
Q 037612 418 YMKAMAARALWHLAKGNSPICRSITESRALLCFAVLL---EKGPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPAC 494 (663)
Q Consensus 418 ~lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL---~~~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a~ 494 (663)
+.++.|..+++.++.|-.... ..-++.++..+ ....+.++..++|+|..++..-..+++ ..
T Consensus 464 ~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-----------~l 527 (963)
T 2x19_B 464 QHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-----------MI 527 (963)
T ss_dssp HHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-----------HH
T ss_pred HHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-----------HH
Confidence 347788999999998754321 22233333333 224678999999999877643222222 12
Q ss_pred HhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhc----cHHHHHHhccc--CCHHHHHHHHHHHHhccc
Q 037612 495 KAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETR----MIVPLVKLLDE--REAEVSREASIALTKFAC 562 (663)
Q Consensus 495 ~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~----~I~pLV~LL~~--~~~~v~~eAa~AL~~la~ 562 (663)
..+++.|+..+.+ +.++..|+.++..+++.....=.. ++..|..++++ -+.+.+..+..|++.++.
T Consensus 528 ~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 528 NSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence 3467778877754 789999999999998754321112 34444455554 357788888888888864
No 107
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=52.74 E-value=1.9e+02 Score=29.58 Aligned_cols=107 Identities=11% Similarity=0.049 Sum_probs=71.0
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHHHHhc--CChHHHHHhhccCChHHHHHHHHHHHHhcCC--Ccc-hHHHHHcCchH
Q 037612 159 GSLEHKSDAAASLVSLARDNDRYGKLIIEE--GGVGPLLKLVKEGKPEGQENAARAIGLLGRD--PES-VEHMIHSGVCL 233 (663)
Q Consensus 159 G~~e~k~~AA~~L~~La~~~~~~~~~Ive~--G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~--~~~-~~~iv~aGaIp 233 (663)
+...-+.-+.+.+.|+-.. +..++.+... -.++.+..++.+.+..+|..+++.++|+|.. ..+ ... ..-.+.
T Consensus 160 ~~p~n~ml~lR~l~NlF~~-~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~--~~~ll~ 236 (304)
T 3ebb_A 160 GKPANQLLALRTFCNCFVG-QAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG--KAQCLS 236 (304)
T ss_dssp SCHHHHHHHHHHHHHGGGS-HHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH--HHHHHH
T ss_pred CChHHHHHHHHHHHHccCC-chhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH--HHHHHH
Confidence 4566678888899998765 6677777642 2455556565556789999999999999942 111 111 111445
Q ss_pred HHHHhhcc-CChhHHHHHHHHHHHHhcCChhHHHHH
Q 037612 234 VFAKILKE-GPMKVQAVVAWAVSELAGNYPKCQDLF 268 (663)
Q Consensus 234 ~Lv~lL~s-~~~~vq~~Aa~aL~nLA~~~~~~r~~i 268 (663)
.+..+++. .+.|..-...-||++|...+++.++..
T Consensus 237 ~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~la 272 (304)
T 3ebb_A 237 LISTILEVVQDLEATFRLLVALGTLISDDSNAVQLA 272 (304)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHH
Confidence 55566644 578888999999999997555544433
No 108
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=52.56 E-value=1.2e+02 Score=30.28 Aligned_cols=99 Identities=9% Similarity=0.099 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHHhhc-CChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC---CCcchHHHHHcCchHH
Q 037612 159 GSLEHKSDAAASLVSLAR-DNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR---DPESVEHMIHSGVCLV 234 (663)
Q Consensus 159 G~~e~k~~AA~~L~~La~-~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~---~~~~~~~iv~aGaIp~ 234 (663)
.+-.+++.++.++..++. .+++ -.++.+...+++++..+++.|...+.--+. ...+... ++|.
T Consensus 116 ~~WrVre~lA~a~~~~~~~~~pe--------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~-----ll~i 182 (240)
T 3l9t_A 116 NNWRVQEVLAKAFDEFCKKIEYK--------KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNE-----AIRR 182 (240)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCTT--------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHH-----HHHH
T ss_pred CCccHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHH-----HHHH
Confidence 477888888888888874 3232 257788888888889999888776532121 1222222 4666
Q ss_pred HHHhhccCChhHHHHHHHHHHHHhcCChhHHHHHHh
Q 037612 235 FAKILKEGPMKVQAVVAWAVSELAGNYPKCQDLFAQ 270 (663)
Q Consensus 235 Lv~lL~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~ 270 (663)
|-.+..+++.=||..++|+|..++..+|+--..+.+
T Consensus 183 L~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 183 IADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELK 218 (240)
T ss_dssp HHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 666667788889999999999999988875544433
No 109
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=52.11 E-value=2e+02 Score=28.92 Aligned_cols=139 Identities=13% Similarity=0.075 Sum_probs=91.3
Q ss_pred cCChhHHHHHHHHHHHHh-hhhhccHHHHhhhcCCCCchhHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhcc
Q 037612 456 KGPEDVQYNSAMALMEIT-AVAEKDAELRRSAFKPNAPACKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRM 534 (663)
Q Consensus 456 ~~~~~vq~~aa~AL~~i~-a~a~~~~~~rr~a~~~~~~a~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~ 534 (663)
..+..+...+.-.|..+- ...+ .-++-+.--+..+++.|+.=+.+..+.+...+-..+-.+...++ ...+
T Consensus 98 d~N~~v~~~~L~~L~~l~~~l~~-------~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~--~~~v 168 (266)
T 2of3_A 98 ETNPAALIKVLELCKVIVELIRD-------TETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG--PLKM 168 (266)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHH-------TTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC--HHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHh-------ccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC--HHHH
Confidence 446666666666665542 1111 11222222234577888766655556677666666655554322 2457
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHhcccC-CCCCChhhHHHHHHcCCH---HHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 037612 535 IVPLVKLLDEREAEVSREASIALTKFACS-DNYLHSDHSKAIISAGGA---KHLVQLVYFGEQIVQLSALVLLCYIALHV 610 (663)
Q Consensus 535 I~pLV~LL~~~~~~v~~eAa~AL~~la~~-~~~~~~~~~~~Iv~~ggi---~~Lv~LL~~~~~~~q~~Al~~L~~la~~~ 610 (663)
.+.++.-+.+.+..++.+....+..+-.. | .. ...++ +++..++...+..+...|+.++..+-.+.
T Consensus 169 ~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G----~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 169 TPMLLDALKSKNARQRSECLLVIEYYITNAG----IS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC----SG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHhcC----CC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 88888999999999999999888877411 1 11 24578 99999999999888888999998777777
Q ss_pred CCh
Q 037612 611 PDS 613 (663)
Q Consensus 611 ~~~ 613 (663)
++.
T Consensus 239 Gd~ 241 (266)
T 2of3_A 239 GDQ 241 (266)
T ss_dssp TTH
T ss_pred hHH
Confidence 763
No 110
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=51.52 E-value=75 Score=37.92 Aligned_cols=132 Identities=8% Similarity=-0.016 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHhhhccHHHHHHHhhc-----CChhHHHHHHHHHHHHhhhhhccHHHHhhhcCCCCch
Q 037612 419 MKAMAARALWHLAKGNSPICRSITESRALLCFAVLLEK-----GPEDVQYNSAMALMEITAVAEKDAELRRSAFKPNAPA 493 (663)
Q Consensus 419 lk~~Aa~AL~~La~gn~~~~~~I~esgal~~L~~LL~~-----~~~~vq~~aa~AL~~i~a~a~~~~~~rr~a~~~~~~a 493 (663)
.+..|..|++.++.+.......-.-...+..|..+.+. ..+-++..++|++..++..-..+++ .
T Consensus 469 ~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~-----------~ 537 (1049)
T 3m1i_C 469 NINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-----------F 537 (1049)
T ss_dssp HHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH-----------H
T ss_pred HHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHH-----------H
Confidence 47788999998886543321111111223344444432 1234555677887766533222322 2
Q ss_pred hHhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhh--------ccHHHHHH----hcccCCHHHHHHHHHHHHhcc
Q 037612 494 CKAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATET--------RMIVPLVK----LLDEREAEVSREASIALTKFA 561 (663)
Q Consensus 494 ~~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~--------~~I~pLV~----LL~~~~~~v~~eAa~AL~~la 561 (663)
...+++.|+..+.+.++.++..|+.|+..++...+..-. ..++++++ ++..-+.+-......|++.++
T Consensus 538 l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii 617 (1049)
T 3m1i_C 538 LRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII 617 (1049)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 245778888888777789999999999999986443210 22555554 344444444555556666654
No 111
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=48.45 E-value=74 Score=33.68 Aligned_cols=109 Identities=14% Similarity=0.095 Sum_probs=74.5
Q ss_pred HHHHhccCCCHHHHH-HHHHHHHHhhcCChhh-HHHHHhcCChHHHHHhhcc-----------CChHHHHHHHHHHHHhc
Q 037612 151 QVAILYTAGSLEHKS-DAAASLVSLARDNDRY-GKLIIEEGGVGPLLKLVKE-----------GKPEGQENAARAIGLLG 217 (663)
Q Consensus 151 li~~L~~~G~~e~k~-~AA~~L~~La~~~~~~-~~~Ive~G~Ip~Lv~LL~s-----------g~~~~q~~Aa~AL~nLs 217 (663)
+|..|+. +....|. .-...|..--+.++.. .+..+ .+|+..|+++|.. .+...|.....||..|.
T Consensus 71 yi~~L~~-~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm 148 (383)
T 3eg5_B 71 YIQELRS-GLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 148 (383)
T ss_dssp HHHHHTT-TCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHh-cccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh
Confidence 3667777 7433332 2222333222223323 34444 7789999999952 13477889999999999
Q ss_pred CCCcchHHHH-HcCchHHHHHhhccCChhHHHHHHHHHHHHhcCC
Q 037612 218 RDPESVEHMI-HSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNY 261 (663)
Q Consensus 218 ~~~~~~~~iv-~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~ 261 (663)
.+......++ ....|..|+..|.+..+.++..|...|+.++..+
T Consensus 149 N~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~ 193 (383)
T 3eg5_B 149 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILP 193 (383)
T ss_dssp SSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCC
T ss_pred cchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCc
Confidence 8766655555 5678999999999999999999999999998644
No 112
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=47.48 E-value=22 Score=40.15 Aligned_cols=85 Identities=19% Similarity=0.195 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhcc
Q 037612 162 EHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKE 241 (663)
Q Consensus 162 e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s 241 (663)
.+|+-+|.+|+.+ ..-+.. -.++..|+..+....-+++..+.-.|..+. +--.. =-++++.++.-|++
T Consensus 243 PVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~--Ld~Vv~aVL~GL~D 310 (800)
T 3oc3_A 243 PVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED--KDGLCRKLVSLLSS 310 (800)
T ss_dssp HHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC--HHHHHHHHHHHTTC
T ss_pred ehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH--HHHHHHHHHhhcCC
Confidence 5788889999888 543322 345666666666666788889999999882 11111 25678899999999
Q ss_pred CChhHHHHHHHHHHHHh
Q 037612 242 GPMKVQAVVAWAVSELA 258 (663)
Q Consensus 242 ~~~~vq~~Aa~aL~nLA 258 (663)
.+++|+..||.+|.-++
T Consensus 311 ~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 311 PDEDIKLLSAELLCHFP 327 (800)
T ss_dssp SSHHHHHHHHHHHTTSC
T ss_pred cccHHHHHHHHHhhhhc
Confidence 99999999999999998
No 113
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=43.39 E-value=1.9e+02 Score=29.56 Aligned_cols=64 Identities=14% Similarity=0.077 Sum_probs=46.6
Q ss_pred Hhhcc-CChHHHHHHHHHHHHhcCCCcchHHHHHc--CchHHHHHhhccCChhHHHHHHHHHHHHhc
Q 037612 196 KLVKE-GKPEGQENAARAIGLLGRDPESVEHMIHS--GVCLVFAKILKEGPMKVQAVVAWAVSELAG 259 (663)
Q Consensus 196 ~LL~s-g~~~~q~~Aa~AL~nLs~~~~~~~~iv~a--GaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~ 259 (663)
..+.+ +.+.-+--+.+++.|+-.++..+..+... -.++.+...+.+.+..++..++..+.|+|.
T Consensus 154 ~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv 220 (304)
T 3ebb_A 154 NLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSV 220 (304)
T ss_dssp HTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 44433 34667899999999999988888777652 244445555555678899999999999985
No 114
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=41.72 E-value=95 Score=31.33 Aligned_cols=107 Identities=11% Similarity=0.140 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHhhcCCh-hhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHH--------cCchH
Q 037612 163 HKSDAAASLVSLARDND-RYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIH--------SGVCL 233 (663)
Q Consensus 163 ~k~~AA~~L~~La~~~~-~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~--------aGaIp 233 (663)
.|..+...++.|.+.+| +-...+.+.+.||..++.++.|+.-.|.-|+..+..|-.++..-.-+-. .-++.
T Consensus 118 LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~ 197 (268)
T 2fv2_A 118 LRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILG 197 (268)
T ss_dssp HHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHH
Confidence 56677778888887544 3344556788999999999999999999999999888766543222211 11333
Q ss_pred HHHHhh-ccCChhHHHHHHHHHHHHhcCChhHHHHHHh
Q 037612 234 VFAKIL-KEGPMKVQAVVAWAVSELAGNYPKCQDLFAQ 270 (663)
Q Consensus 234 ~Lv~lL-~s~~~~vq~~Aa~aL~nLA~~~~~~r~~i~~ 270 (663)
.+|.-| +.+++.+.+.+.++-..|+. ++.+|+.+..
T Consensus 198 ~mV~~l~~~ps~RLLKhiircYlRLsd-n~rar~aL~~ 234 (268)
T 2fv2_A 198 KMVLQLSKEPSARLLKHVVRCYLRLSD-NPRAREALRQ 234 (268)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHHHTT-SHHHHHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 334333 56889999999999999996 6888888764
No 115
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=35.39 E-value=1e+02 Score=32.68 Aligned_cols=108 Identities=16% Similarity=0.142 Sum_probs=72.2
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHh---hcCChhhHHHHHhcCChHHHHHhhcc----C-------ChHHHHHHHHHHHHh
Q 037612 151 QVAILYTAGSLEHKSDAAASLVSL---ARDNDRYGKLIIEEGGVGPLLKLVKE----G-------KPEGQENAARAIGLL 216 (663)
Q Consensus 151 li~~L~~~G~~e~k~~AA~~L~~L---a~~~~~~~~~Ive~G~Ip~Lv~LL~s----g-------~~~~q~~Aa~AL~nL 216 (663)
+|..|+. +....+ -...|.+| -+.++..|..=...+|+..|+.+|.. + +...+.....||..|
T Consensus 9 yv~~L~~-~~~~~~--~~~~L~~L~v~Lrt~~~~Wv~~F~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkal 85 (386)
T 2bnx_A 9 YIQELRS-GLRDMH--LLSCLESLRVSLNNNPVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 85 (386)
T ss_dssp HHHHHTS-CCCHHH--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-ccchHH--HHHHHHHHhHHHhcCCcHHHHHHHHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 3667777 643332 12223332 12233333222236888889988852 1 246788999999999
Q ss_pred cCCCcchHHHH-HcCchHHHHHhhccCChhHHHHHHHHHHHHhcCC
Q 037612 217 GRDPESVEHMI-HSGVCLVFAKILKEGPMKVQAVVAWAVSELAGNY 261 (663)
Q Consensus 217 s~~~~~~~~iv-~aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~~ 261 (663)
..+......++ ...+|..|+..|.+..+.++..+...|+.++..+
T Consensus 86 mN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~ 131 (386)
T 2bnx_A 86 MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILP 131 (386)
T ss_dssp TSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCC
T ss_pred hCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCC
Confidence 98776666555 4678999999999888999999998888888643
No 116
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=34.47 E-value=95 Score=31.35 Aligned_cols=81 Identities=12% Similarity=0.131 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhccCC-----hhHHHHHHHHHHHHhc-CChhHHHHHHhCCcHHHHH
Q 037612 205 GQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILKEGP-----MKVQAVVAWAVSELAG-NYPKCQDLFAQHNIIRLLV 278 (663)
Q Consensus 205 ~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~s~~-----~~vq~~Aa~aL~nLA~-~~~~~r~~i~~~g~I~~LV 278 (663)
--.+|..-|..++.+++.+..++++...--|.-+|+..+ +-++-.+-+.++.|.. ++++....+.+.+.||..+
T Consensus 72 RVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL 151 (268)
T 2fv2_A 72 RVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL 151 (268)
T ss_dssp HHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence 346777778899999999999999998877777776543 4566777788888874 4678888888999999999
Q ss_pred HHhccCc
Q 037612 279 GHLAFET 285 (663)
Q Consensus 279 ~LL~sgt 285 (663)
..++.|+
T Consensus 152 rime~Gs 158 (268)
T 2fv2_A 152 RIMESGS 158 (268)
T ss_dssp HHHHHSC
T ss_pred HHHhhcc
Confidence 9999996
No 117
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=27.29 E-value=3.6e+02 Score=28.63 Aligned_cols=115 Identities=11% Similarity=0.082 Sum_probs=85.9
Q ss_pred HHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcCCCcchHHHHHcCchHHHHHhhc-cCChhHH
Q 037612 169 ASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGRDPESVEHMIHSGVCLVFAKILK-EGPMKVQ 247 (663)
Q Consensus 169 ~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~~~iv~aGaIp~Lv~lL~-s~~~~vq 247 (663)
.-|.+|..++....+-.++.+||...-....-.+.+.-+....-|...|....-. .+--...+|-+++.++ .++.++.
T Consensus 264 FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~-~t~L~e~LPFi~~~i~~h~eDdvv 342 (619)
T 3c2g_A 264 FDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALA-KTPLENILPFLLRLIEIHPDDEVI 342 (619)
T ss_dssp HHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGG-TSCCTTHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHh-hccccccchHHHHHhccCCCcceE
Confidence 3455555554555777889999999999988888888887777777776432211 1112346788888885 5778899
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhCCcHHHHHHHhccC
Q 037612 248 AVVAWAVSELAGNYPKCQDLFAQHNIIRLLVGHLAFE 284 (663)
Q Consensus 248 ~~Aa~aL~nLA~~~~~~r~~i~~~g~I~~LV~LL~sg 284 (663)
-...+-|+|..++....++.-...|+|+.|-..+..-
T Consensus 343 YSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky 379 (619)
T 3c2g_A 343 YSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKY 379 (619)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTS
T ss_pred EecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhC
Confidence 9999999999988878888888999999998876543
No 118
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=27.15 E-value=1.5e+02 Score=35.36 Aligned_cols=92 Identities=11% Similarity=-0.014 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCChHHHHHHHHHHHHhcC---CCcchHHHHHcCchHHH
Q 037612 159 GSLEHKSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLVKEGKPEGQENAARAIGLLGR---DPESVEHMIHSGVCLVF 235 (663)
Q Consensus 159 G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~---~~~~~~~iv~aGaIp~L 235 (663)
.+.+....+..+|.+....- .-..|++.+.|+.+.++|.. +..++.|+.+|..+.. +++.+..++..=.+...
T Consensus 205 ~~~~l~~~~L~~l~s~i~wi--~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~ 280 (980)
T 3ibv_A 205 KNYGTVGLCLQVYAQWVSWI--NINLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLF 280 (980)
T ss_dssp TCHHHHHHHHHHHHHHTTTS--CHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhc--CHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHH
Confidence 56777788888888877542 35677777888888888865 7899999999999883 34555555544122222
Q ss_pred HHhhc--cCChhHHHHHHHHH
Q 037612 236 AKILK--EGPMKVQAVVAWAV 254 (663)
Q Consensus 236 v~lL~--s~~~~vq~~Aa~aL 254 (663)
+.-+. ..+.+..+..+..+
T Consensus 281 ~~~l~~~~~D~d~~~~la~L~ 301 (980)
T 3ibv_A 281 FSKSQEQSTDPNFDEHVAKLI 301 (980)
T ss_dssp HCC-----CCHHHHHHHHHHH
T ss_pred HHHHhcccccHHHHHHHHHHH
Confidence 22222 35666554444433
No 119
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=25.81 E-value=3e+02 Score=28.73 Aligned_cols=113 Identities=13% Similarity=0.136 Sum_probs=86.8
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcC---ChHHHHHhhccCChHHHHHHHHHHHHhcCCCcch
Q 037612 147 LIWEQVAILYTAGSLEHKSDAAASLVSLARDNDRYGKLIIEEG---GVGPLLKLVKEGKPEGQENAARAIGLLGRDPESV 223 (663)
Q Consensus 147 ~v~~li~~L~~~G~~e~k~~AA~~L~~La~~~~~~~~~Ive~G---~Ip~Lv~LL~sg~~~~q~~Aa~AL~nLs~~~~~~ 223 (663)
.+|.++.-++. ++.+.-.+|..++-.|-.....-.....+.. .....-.||.|++-..+..+..-|+.|-.+..|.
T Consensus 165 ~f~~fF~yv~~-~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~ 243 (341)
T 1upk_A 165 QFYDFFRYVEM-STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNF 243 (341)
T ss_dssp GGGHHHHHTTC-SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGH
T ss_pred HHHHHHHHhcC-CCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHH
Confidence 45888999999 9999999999999987654332222222221 3566778999999999999999999999998887
Q ss_pred HHHHH----cCchHHHHHhhccCChhHHHHHHHHHHHHhcC
Q 037612 224 EHMIH----SGVCLVFAKILKEGPMKVQAVVAWAVSELAGN 260 (663)
Q Consensus 224 ~~iv~----aGaIp~Lv~lL~s~~~~vq~~Aa~aL~nLA~~ 260 (663)
..|.. ..=+..++.+|++.+..+|-.|-...--...+
T Consensus 244 ~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 244 TIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 77654 44578889999999999999888766555543
No 120
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=24.40 E-value=5.2e+02 Score=27.32 Aligned_cols=106 Identities=10% Similarity=0.124 Sum_probs=62.8
Q ss_pred HhHHHHHHHHhhhcCcchhhHHHHHHHHhhhchhhHhhccHHHHHHhcccCCHHHHHHHHHHHHhcccCCCCCChhhHHH
Q 037612 495 KAVVDQLFRIIEKADSDLLIPCIKAVGNLARTFKATETRMIVPLVKLLDEREAEVSREASIALTKFACSDNYLHSDHSKA 574 (663)
Q Consensus 495 ~~vv~qL~~ll~~~~~~l~~~a~~aLg~La~~~~~~e~~~I~pLV~LL~~~~~~v~~eAa~AL~~la~~~~~~~~~~~~~ 574 (663)
....++|+.+....+.+++..++.=|+.....-...-...++.|..||.+.++.|.+.+..+.+++= +---+.
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslY-------pl~f~~ 134 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKKAILTMTQLY-------KVALQW 134 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH-------HHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-------HHHHHH
Confidence 3456667776666666666666554433322100011356889999999999999998888776651 111233
Q ss_pred HHHcCCH---------------HHHHHHHhcCChhHHHHHHHHHHHHh
Q 037612 575 IISAGGA---------------KHLVQLVYFGEQIVQLSALVLLCYIA 607 (663)
Q Consensus 575 Iv~~ggi---------------~~Lv~LL~~~~~~~q~~Al~~L~~la 607 (663)
++..++. .-+++++.++...++..++-.+-.+.
T Consensus 135 i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 135 MVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 3333332 23445566677778888887776654
No 121
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=21.83 E-value=3.1e+02 Score=22.18 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=19.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 037612 26 ATSMKQDCAELKSKTEKLAALLRQAARA 53 (663)
Q Consensus 26 ~~~f~~~~~~i~~k~~~l~~~L~~~~~~ 53 (663)
...|...|...+.+++++...|.+.++.
T Consensus 50 ~~aF~~~~~~~~~~~~~~~~~L~~i~~~ 77 (98)
T 3gwk_C 50 FDSFEAQFNELSPKITEFAQLLEDINQQ 77 (98)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777777777777777777765543
Done!