BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037613
(553 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 100/155 (64%), Gaps = 6/155 (3%)
Query: 1 MTNYLYSALSRKSIETF-IDDQLNRGDKISQSLVNAIEASTISVIIFSEGYASSRWCLDE 59
T++LY +L R I TF DD+L +G +I +L+ AI+ S I V I S GYA S+WCL E
Sbjct: 51 FTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLME 110
Query: 60 LLKILECKREYV-QIVIPVFYRVDPSDVRNQTGTFGDSFSKLEERFKENSKKLQSWRNAL 118
L +I+ + E +I++P+FY VDPSDVR+QTG + +F K +F + + +Q+W++AL
Sbjct: 111 LAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDAL 168
Query: 119 KEAASLSGFH-SHNIRQLNLPESELTEEIVNHILK 152
K+ L G+H N +Q + + +++ +I +HI K
Sbjct: 169 KKVGDLKGWHIGKNDKQGAIAD-KVSADIWSHISK 202
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 89/149 (59%), Gaps = 9/149 (6%)
Query: 3 NYLYSALSRKSIETFIDD-QLNRGDKISQSLVNAIEASTISVIIFSEGYASSRWCLDELL 61
++LY L R+SI TF DD +L G + S L + IE S +V++ SE YA+S WCLDEL+
Sbjct: 26 SFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELV 85
Query: 62 KILECKREYVQIVIPVFYRVDPSDVRNQTGTFGDSFSKLEERFKENSKKLQSWRNALKEA 121
I++ +++ V+P+FY V+P+ VR QTG + F K R E+ +K+ WR AL
Sbjct: 86 TIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNF 143
Query: 122 ASLSGFHSHNIRQLNLPESELTEEIVNHI 150
A LSG S + +S+L ++I N I
Sbjct: 144 AQLSGDCSGD------DDSKLVDKIANEI 166
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 33.5 bits (75), Expect = 0.34, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 5 LYSALSRKSIETFIDD-QLNRGDKISQSLVNAIEASTISVIIFSEGYASSRWCLDELLKI 63
L L E + DD L GD + +S+ + +S +++ S + W EL +
Sbjct: 39 LAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGL 98
Query: 64 LECKREYVQIVIPVFYRVDPSDVRNQTGTFGDSFS 98
+ + ++P++++V +V + + T D +
Sbjct: 99 FQLESSGRSRILPIWHKVSKDEVASFSPTMADKLA 133
>pdb|3SHQ|A Chain A, Crystal Structure Of Ublcp1
Length = 320
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 21/81 (25%)
Query: 339 QILHPKIHDVLKLSYDDLD-----------VNEKGIFLDVACFFKSDDVYPVMKFLDASG 387
+++ P +H+ L +Y+D D + EK L VA S+D Y VM +LD++
Sbjct: 163 ELMRPYLHEFLTSAYEDYDIVIWSATSMRWIEEKMRLLGVA----SNDNYKVMFYLDSTA 218
Query: 388 FHLEIGISV-LADKSLIDVNP 407
ISV + ++ ++DV P
Sbjct: 219 M-----ISVHVPERGVVDVKP 234
>pdb|3U44|B Chain B, Crystal Structure Of Addab-Dna Complex
pdb|3U4Q|B Chain B, Structure Of Addab-Dna Complex At 2.8 Angstroms
Length = 1166
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 150 ILKRLAELFPHNNDRLVGVESRVVAIESLL 179
I+KRL ELFPH+ +RL+ E V+ E L
Sbjct: 684 IVKRLEELFPHHKERLLTNEPEQVSDEEQL 713
>pdb|2DI9|A Chain A, Solution Structure Of The 9th Filamin Domain From Human
Filamin-B
Length = 131
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 491 SINGDNRCKVSYLQESPG--FAEVRF--LHRHGYPLKS 524
S NGD C VSYL PG F + F +H G P K+
Sbjct: 79 SDNGDGTCSVSYLPTKPGEYFVNILFEEVHIPGSPFKA 116
>pdb|1RPY|A Chain A, Crystal Structure Of The Dimeric Sh2 Domain Of Aps
pdb|1RPY|B Chain B, Crystal Structure Of The Dimeric Sh2 Domain Of Aps
Length = 114
Score = 29.3 bits (64), Expect = 5.8, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 476 TFVKMHKLRFLKFYNSINGDNRCKVSYLQESPGFAEVRFLHRHGYPLKS 524
TF K + L+ S+NG +C V +L F +R H H PL+S
Sbjct: 53 TFNFQGKAKHLRL--SLNGHGQCHVQHLWFQSVFDXLRHFHTHPIPLES 99
>pdb|1XR7|A Chain A, Crystal Structure Of Rna-Dependent Rna Polymerase 3d From
Human Rhinovirus Serotype 16
pdb|1XR7|B Chain B, Crystal Structure Of Rna-Dependent Rna Polymerase 3d From
Human Rhinovirus Serotype 16
Length = 460
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 16 TFIDDQLNRGDKISQSLVNAIEASTIS-VIIFSEGYAS 52
TF+ D+L + DKI+ IEAS+I+ I+F Y +
Sbjct: 156 TFLKDELRKKDKIAAGKTRVIEASSINDTILFRTVYGN 193
>pdb|1TP7|A Chain A, Crystal Structure Of The Rna-Dependent Rna Polymerase From
Human Rhinovirus 16
pdb|1TP7|B Chain B, Crystal Structure Of The Rna-Dependent Rna Polymerase From
Human Rhinovirus 16
pdb|1TP7|C Chain C, Crystal Structure Of The Rna-Dependent Rna Polymerase From
Human Rhinovirus 16
pdb|1TP7|D Chain D, Crystal Structure Of The Rna-Dependent Rna Polymerase From
Human Rhinovirus 16
Length = 460
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 16 TFIDDQLNRGDKISQSLVNAIEASTIS-VIIFSEGYAS 52
TF+ D+L + DKI+ IEAS+I+ I+F Y +
Sbjct: 156 TFLKDELRKKDKIAAGKTRVIEASSINDTILFRTVYGN 193
>pdb|1RQQ|C Chain C, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|1RQQ|D Chain D, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
Length = 114
Score = 28.9 bits (63), Expect = 7.8, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 476 TFVKMHKLRFLKFYNSINGDNRCKVSYLQESPGFAEVRFLHRHGYPLKS 524
TF K + L+ S+NG +C V +L F +R H H PL+S
Sbjct: 53 TFNFQGKAKHLRL--SLNGHGQCHVQHLWFQSVFDMLRHFHTHPIPLES 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,624,812
Number of Sequences: 62578
Number of extensions: 627282
Number of successful extensions: 1552
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1539
Number of HSP's gapped (non-prelim): 15
length of query: 553
length of database: 14,973,337
effective HSP length: 104
effective length of query: 449
effective length of database: 8,465,225
effective search space: 3800886025
effective search space used: 3800886025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)