Query 037613
Match_columns 553
No_of_seqs 410 out of 3223
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 02:43:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037613.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037613hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 2.1E-95 4E-100 845.7 49.1 545 1-552 28-631 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 2.4E-55 5.2E-60 486.7 24.4 369 166-545 161-631 (889)
3 PLN03194 putative disease resi 100.0 6.6E-37 1.4E-41 271.7 13.2 136 1-156 42-179 (187)
4 PF00931 NB-ARC: NB-ARC domain 100.0 1.5E-32 3.2E-37 274.7 12.1 219 168-391 1-284 (287)
5 PF01582 TIR: TIR domain; Int 99.8 7.5E-20 1.6E-24 162.3 3.1 119 1-119 14-140 (141)
6 smart00255 TIR Toll - interleu 99.6 1.6E-14 3.6E-19 128.0 11.2 120 1-122 18-138 (140)
7 PRK04841 transcriptional regul 99.3 2.6E-10 5.6E-15 132.2 24.1 258 158-428 9-335 (903)
8 PF13676 TIR_2: TIR domain; PD 99.1 3.9E-11 8.6E-16 100.0 1.9 76 1-80 12-87 (102)
9 PRK00411 cdc6 cell division co 99.0 5.9E-08 1.3E-12 101.5 21.3 108 160-272 27-150 (394)
10 TIGR00635 ruvB Holliday juncti 98.9 2E-08 4.3E-13 101.3 14.3 232 163-411 4-294 (305)
11 PRK00080 ruvB Holliday junctio 98.9 1.1E-08 2.4E-13 104.0 12.2 238 159-410 21-314 (328)
12 TIGR02928 orc1/cdc6 family rep 98.8 6.3E-07 1.4E-11 92.7 20.8 108 160-272 12-141 (365)
13 COG3903 Predicted ATPase [Gene 98.7 5.2E-08 1.1E-12 97.5 10.8 243 182-429 14-318 (414)
14 COG3899 Predicted ATPase [Gene 98.7 2.5E-07 5.4E-12 104.7 14.3 126 298-424 240-385 (849)
15 PTZ00202 tuzin; Provisional 98.6 2.6E-07 5.6E-12 93.6 12.0 142 113-267 195-368 (550)
16 TIGR03015 pepcterm_ATPase puta 98.6 2.5E-06 5.5E-11 84.2 17.2 85 182-272 43-135 (269)
17 COG2909 MalT ATP-dependent tra 98.5 7E-06 1.5E-10 89.0 19.1 258 158-428 14-341 (894)
18 PF01637 Arch_ATPase: Archaeal 98.5 2.3E-07 4.9E-12 89.3 6.8 53 165-217 1-55 (234)
19 PF13191 AAA_16: AAA ATPase do 98.3 3.7E-07 7.9E-12 84.6 4.1 46 164-209 1-51 (185)
20 PF13855 LRR_8: Leucine rich r 98.2 1.4E-06 3E-11 64.9 3.7 57 481-544 1-61 (61)
21 COG2256 MGS1 ATPase related to 98.2 6.7E-06 1.4E-10 82.1 9.4 102 159-282 20-128 (436)
22 PF13401 AAA_22: AAA domain; P 98.2 4.1E-06 8.9E-11 72.9 7.2 86 182-272 4-99 (131)
23 PF05496 RuvB_N: Holliday junc 98.2 3E-06 6.6E-11 79.0 6.2 53 159-211 20-79 (233)
24 PRK09376 rho transcription ter 98.1 5.4E-06 1.2E-10 83.8 7.2 90 182-274 169-270 (416)
25 PF05729 NACHT: NACHT domain 98.1 6.8E-06 1.5E-10 74.4 7.3 88 183-273 1-94 (166)
26 cd01128 rho_factor Transcripti 98.1 7.2E-06 1.6E-10 79.3 7.7 89 182-273 16-116 (249)
27 cd00009 AAA The AAA+ (ATPases 98.1 1.7E-05 3.6E-10 69.8 9.3 51 166-216 1-53 (151)
28 PRK13342 recombination factor 98.1 0.00016 3.4E-09 76.0 17.1 52 159-210 8-64 (413)
29 PF12799 LRR_4: Leucine Rich r 98.0 3.1E-06 6.8E-11 58.2 2.2 40 510-549 1-41 (44)
30 COG1474 CDC6 Cdc6-related prot 98.0 2.3E-05 5.1E-10 80.1 9.5 108 160-272 14-135 (366)
31 KOG0617 Ras suppressor protein 97.9 9.5E-07 2.1E-11 77.8 -2.0 88 455-550 79-168 (264)
32 PTZ00112 origin recognition co 97.8 6.9E-05 1.5E-09 82.3 9.7 108 160-272 752-881 (1164)
33 TIGR00767 rho transcription te 97.8 6.4E-05 1.4E-09 76.5 8.5 90 182-274 168-269 (415)
34 PRK12323 DNA polymerase III su 97.7 0.0017 3.6E-08 70.2 18.2 49 159-207 12-63 (700)
35 PRK07003 DNA polymerase III su 97.7 0.0014 3.1E-08 71.7 16.9 49 159-207 12-63 (830)
36 PF13173 AAA_14: AAA domain 97.7 0.00015 3.2E-09 63.0 7.8 78 183-279 3-80 (128)
37 KOG2543 Origin recognition com 97.7 0.00027 5.7E-09 70.4 9.8 107 162-276 5-131 (438)
38 KOG4658 Apoptotic ATPase [Sign 97.6 2E-05 4.4E-10 89.3 2.1 66 482-552 546-615 (889)
39 PLN03150 hypothetical protein; 97.6 5.5E-05 1.2E-09 83.6 5.1 73 472-550 433-509 (623)
40 PF12799 LRR_4: Leucine Rich r 97.6 3.4E-05 7.3E-10 53.0 2.0 40 481-527 1-41 (44)
41 KOG0444 Cytoskeletal regulator 97.6 2.9E-05 6.3E-10 81.2 2.4 70 473-549 118-195 (1255)
42 KOG0617 Ras suppressor protein 97.6 1.3E-05 2.9E-10 70.7 -0.2 71 469-546 44-116 (264)
43 PRK04195 replication factor C 97.5 0.0002 4.2E-09 76.9 7.9 50 158-207 9-64 (482)
44 PRK10865 protein disaggregatio 97.5 0.00025 5.3E-09 81.0 9.0 64 142-208 160-225 (857)
45 PF07725 LRR_3: Leucine Rich R 97.5 4.9E-05 1.1E-09 41.9 1.6 20 533-552 1-20 (20)
46 PRK14949 DNA polymerase III su 97.5 0.0043 9.3E-08 69.4 18.0 50 159-208 12-64 (944)
47 PRK11331 5-methylcytosine-spec 97.5 0.00019 4.1E-09 74.3 7.1 102 163-273 175-285 (459)
48 PRK06893 DNA replication initi 97.5 0.00024 5.1E-09 68.3 7.3 36 182-217 39-74 (229)
49 PRK13341 recombination factor 97.5 0.00022 4.7E-09 79.3 7.8 52 159-210 24-80 (725)
50 TIGR02639 ClpA ATP-dependent C 97.5 0.00046 1E-08 77.8 10.4 65 141-208 163-229 (731)
51 PF00004 AAA: ATPase family as 97.5 0.00022 4.8E-09 61.8 6.2 23 185-207 1-23 (132)
52 TIGR03420 DnaA_homol_Hda DnaA 97.5 0.00035 7.7E-09 66.9 8.0 55 163-217 15-73 (226)
53 PF05621 TniB: Bacterial TniB 97.5 0.0022 4.8E-08 62.9 13.2 103 164-271 35-156 (302)
54 PRK14963 DNA polymerase III su 97.4 0.00066 1.4E-08 72.6 10.0 49 159-207 10-61 (504)
55 KOG2028 ATPase related to the 97.4 0.0002 4.3E-09 70.6 5.4 104 159-280 134-244 (554)
56 PRK05896 DNA polymerase III su 97.4 0.0085 1.8E-07 64.8 18.3 49 159-207 12-63 (605)
57 cd01133 F1-ATPase_beta F1 ATP 97.4 0.00037 8E-09 67.9 7.3 89 182-273 69-176 (274)
58 TIGR01242 26Sp45 26S proteasom 97.4 0.00032 7E-09 72.4 7.3 51 160-210 119-184 (364)
59 PRK14960 DNA polymerase III su 97.4 0.0079 1.7E-07 65.3 17.8 49 159-207 11-62 (702)
60 CHL00095 clpC Clp protease ATP 97.4 0.00042 9E-09 79.1 8.7 64 141-207 160-225 (821)
61 PF14516 AAA_35: AAA-like doma 97.4 0.019 4.1E-07 58.4 19.7 113 158-272 6-139 (331)
62 TIGR03345 VI_ClpV1 type VI sec 97.4 0.00082 1.8E-08 76.5 10.7 65 141-208 168-234 (852)
63 PRK14958 DNA polymerase III su 97.4 0.009 2E-07 64.2 18.0 48 159-206 12-62 (509)
64 PLN03025 replication factor C 97.4 0.0004 8.6E-09 70.4 7.2 50 158-207 8-59 (319)
65 PRK07471 DNA polymerase III su 97.4 0.0067 1.5E-07 62.3 16.1 49 158-206 14-65 (365)
66 PF14580 LRR_9: Leucine-rich r 97.4 0.00011 2.3E-09 67.1 2.6 63 477-546 60-127 (175)
67 PRK14951 DNA polymerase III su 97.3 0.0097 2.1E-07 65.0 17.8 48 159-206 12-62 (618)
68 PRK03992 proteasome-activating 97.3 0.00038 8.2E-09 72.4 6.7 49 161-209 129-192 (389)
69 PRK14961 DNA polymerase III su 97.3 0.002 4.3E-08 66.5 11.9 49 159-207 12-63 (363)
70 PRK08691 DNA polymerase III su 97.3 0.0099 2.1E-07 65.1 17.3 48 159-206 12-62 (709)
71 TIGR03346 chaperone_ClpB ATP-d 97.3 0.00071 1.5E-08 77.5 9.1 64 142-208 155-220 (852)
72 PRK08116 hypothetical protein; 97.3 0.00084 1.8E-08 66.0 8.5 74 183-270 115-188 (268)
73 smart00382 AAA ATPases associa 97.3 0.00078 1.7E-08 58.5 7.5 34 183-216 3-36 (148)
74 PRK12402 replication factor C 97.3 0.00067 1.4E-08 69.3 8.1 51 159-209 11-63 (337)
75 PRK12377 putative replication 97.3 0.0044 9.5E-08 60.0 12.9 36 182-217 101-136 (248)
76 PRK14957 DNA polymerase III su 97.3 0.0042 9.1E-08 66.8 14.0 49 159-207 12-63 (546)
77 TIGR03689 pup_AAA proteasome A 97.3 0.00044 9.5E-09 73.5 6.1 50 160-209 179-243 (512)
78 PRK14964 DNA polymerase III su 97.3 0.0078 1.7E-07 63.8 15.4 48 159-206 9-59 (491)
79 KOG0444 Cytoskeletal regulator 97.2 5.3E-05 1.1E-09 79.3 -0.8 71 473-550 214-286 (1255)
80 PRK14088 dnaA chromosomal repl 97.2 0.0053 1.1E-07 64.9 14.0 73 183-271 131-205 (440)
81 PF13855 LRR_8: Leucine rich r 97.2 0.00022 4.8E-09 52.9 2.5 42 510-551 1-44 (61)
82 PRK14956 DNA polymerase III su 97.2 0.0031 6.8E-08 66.2 11.8 50 159-208 14-66 (484)
83 PRK14962 DNA polymerase III su 97.2 0.0012 2.7E-08 70.0 8.4 49 159-207 10-61 (472)
84 PLN00113 leucine-rich repeat r 97.2 0.00038 8.3E-09 81.6 5.0 71 473-549 180-254 (968)
85 PF05673 DUF815: Protein of un 97.1 0.0014 3E-08 62.3 7.6 53 157-209 21-79 (249)
86 PLN00113 leucine-rich repeat r 97.1 0.00081 1.8E-08 78.9 7.6 71 473-550 110-183 (968)
87 PRK08118 topology modulation p 97.1 0.00036 7.9E-09 63.5 3.7 34 183-216 2-38 (167)
88 PRK12608 transcription termina 97.1 0.0021 4.5E-08 65.3 9.1 97 174-273 122-233 (380)
89 KOG0744 AAA+-type ATPase [Post 97.1 0.002 4.3E-08 62.8 8.5 80 182-272 177-262 (423)
90 PF13207 AAA_17: AAA domain; P 97.1 0.00043 9.2E-09 59.2 3.4 23 184-206 1-23 (121)
91 PRK08727 hypothetical protein; 97.1 0.0021 4.5E-08 62.0 8.4 56 162-217 18-76 (233)
92 PTZ00454 26S protease regulato 97.1 0.0014 3.1E-08 68.0 7.7 51 160-210 142-207 (398)
93 TIGR02397 dnaX_nterm DNA polym 97.1 0.022 4.7E-07 58.6 16.5 49 159-207 10-61 (355)
94 PRK00440 rfc replication facto 97.1 0.0017 3.7E-08 65.7 8.2 50 159-208 13-64 (319)
95 PRK05564 DNA polymerase III su 97.1 0.013 2.8E-07 59.2 14.3 44 163-206 4-50 (313)
96 COG1618 Predicted nucleotide k 97.0 0.00059 1.3E-08 59.9 3.7 34 183-216 6-40 (179)
97 PF04665 Pox_A32: Poxvirus A32 97.0 0.0011 2.5E-08 63.3 5.6 36 182-217 13-48 (241)
98 PTZ00361 26 proteosome regulat 97.0 0.0012 2.5E-08 69.2 6.2 49 162-210 182-245 (438)
99 PF00308 Bac_DnaA: Bacterial d 97.0 0.0015 3.2E-08 62.3 6.5 74 183-272 35-109 (219)
100 PRK08084 DNA replication initi 97.0 0.0027 5.8E-08 61.3 8.3 46 172-217 33-80 (235)
101 PRK07952 DNA replication prote 97.0 0.027 5.8E-07 54.4 15.0 74 183-271 100-173 (244)
102 PLN03210 Resistant to P. syrin 97.0 0.0011 2.3E-08 78.9 6.3 67 477-549 653-722 (1153)
103 PRK06645 DNA polymerase III su 97.0 0.004 8.8E-08 66.5 10.0 50 158-207 16-68 (507)
104 KOG0991 Replication factor C, 97.0 0.0067 1.5E-07 56.6 10.0 50 159-208 23-74 (333)
105 KOG0472 Leucine-rich repeat pr 97.0 0.00038 8.2E-09 69.6 2.0 75 474-549 451-544 (565)
106 PRK14969 DNA polymerase III su 96.9 0.0029 6.3E-08 68.3 8.9 49 159-207 12-63 (527)
107 PRK07261 topology modulation p 96.9 0.0018 3.8E-08 59.2 6.2 23 184-206 2-24 (171)
108 PRK14952 DNA polymerase III su 96.9 0.056 1.2E-06 58.8 18.3 49 159-207 9-60 (584)
109 KOG0733 Nuclear AAA ATPase (VC 96.9 0.0017 3.6E-08 68.4 6.1 49 162-210 189-251 (802)
110 smart00763 AAA_PrkA PrkA AAA d 96.9 0.00084 1.8E-08 67.7 3.8 46 163-208 51-104 (361)
111 COG2255 RuvB Holliday junction 96.9 0.00081 1.8E-08 64.5 3.5 52 159-210 22-80 (332)
112 PRK11034 clpA ATP-dependent Cl 96.9 0.0028 6E-08 71.0 8.2 62 142-206 168-231 (758)
113 KOG2227 Pre-initiation complex 96.9 0.006 1.3E-07 62.6 9.6 121 145-272 134-268 (529)
114 PRK08181 transposase; Validate 96.8 0.0038 8.3E-08 61.2 8.1 41 177-217 101-141 (269)
115 KOG0472 Leucine-rich repeat pr 96.8 0.00024 5.3E-09 70.9 -0.4 70 472-549 243-314 (565)
116 PF07728 AAA_5: AAA domain (dy 96.8 0.002 4.3E-08 56.6 5.4 22 185-206 2-23 (139)
117 PRK07994 DNA polymerase III su 96.8 0.0052 1.1E-07 67.3 9.5 49 159-207 12-63 (647)
118 PF14580 LRR_9: Leucine-rich r 96.8 0.001 2.2E-08 60.7 3.4 62 479-547 40-103 (175)
119 PRK14950 DNA polymerase III su 96.8 0.031 6.7E-07 61.4 15.6 49 159-207 12-63 (585)
120 PRK05642 DNA replication initi 96.8 0.0054 1.2E-07 59.1 8.4 35 183-217 46-80 (234)
121 PLN00020 ribulose bisphosphate 96.8 0.0045 9.8E-08 62.3 7.8 73 182-271 148-223 (413)
122 PHA00729 NTP-binding motif con 96.7 0.0051 1.1E-07 58.2 7.7 26 182-207 17-42 (226)
123 PRK06921 hypothetical protein; 96.7 0.0027 5.8E-08 62.4 6.1 36 182-217 117-153 (266)
124 PF01695 IstB_IS21: IstB-like 96.7 0.0037 8.1E-08 57.4 6.7 36 182-217 47-82 (178)
125 PRK00149 dnaA chromosomal repl 96.7 0.0034 7.3E-08 66.8 7.3 72 183-271 149-222 (450)
126 COG1484 DnaC DNA replication p 96.7 0.004 8.7E-08 60.6 7.1 37 181-217 104-140 (254)
127 PRK07764 DNA polymerase III su 96.7 0.019 4.2E-07 64.9 13.2 49 159-207 11-62 (824)
128 PRK06526 transposase; Provisio 96.7 0.0027 5.7E-08 61.9 5.5 27 182-208 98-124 (254)
129 TIGR00362 DnaA chromosomal rep 96.7 0.004 8.7E-08 65.3 7.3 72 183-271 137-210 (405)
130 PRK09361 radB DNA repair and r 96.7 0.007 1.5E-07 58.0 8.4 36 182-217 23-58 (225)
131 PRK14953 DNA polymerase III su 96.7 0.17 3.6E-06 54.2 19.4 49 159-207 12-63 (486)
132 PRK06696 uridine kinase; Valid 96.6 0.0018 3.9E-08 62.0 3.8 27 182-208 22-48 (223)
133 PRK00771 signal recognition pa 96.6 0.037 8.1E-07 58.1 13.6 28 182-209 95-122 (437)
134 PRK06835 DNA replication prote 96.6 0.0048 1E-07 62.3 6.8 36 182-217 183-218 (329)
135 PRK06762 hypothetical protein; 96.6 0.0073 1.6E-07 54.8 7.3 24 183-206 3-26 (166)
136 PHA02544 44 clamp loader, smal 96.6 0.0013 2.8E-08 66.5 2.5 51 157-207 15-68 (316)
137 KOG0735 AAA+-type ATPase [Post 96.5 0.0071 1.5E-07 64.9 7.9 75 182-271 431-505 (952)
138 PRK14970 DNA polymerase III su 96.5 0.0054 1.2E-07 63.5 7.1 49 159-207 13-64 (367)
139 PRK07133 DNA polymerase III su 96.5 0.085 1.8E-06 58.4 16.5 48 159-206 14-64 (725)
140 COG0542 clpA ATP-binding subun 96.5 0.015 3.3E-07 64.3 10.6 107 163-279 491-614 (786)
141 PRK12422 chromosomal replicati 96.5 0.012 2.6E-07 62.2 9.7 72 183-271 142-213 (445)
142 cd01131 PilT Pilus retraction 96.5 0.0061 1.3E-07 57.1 6.7 90 183-278 2-92 (198)
143 PRK09183 transposase/IS protei 96.5 0.011 2.4E-07 57.9 8.7 26 182-207 102-127 (259)
144 TIGR00602 rad24 checkpoint pro 96.5 0.0021 4.5E-08 70.2 4.0 51 157-207 78-135 (637)
145 CHL00176 ftsH cell division pr 96.5 0.0078 1.7E-07 66.2 8.0 47 161-207 181-241 (638)
146 PF13671 AAA_33: AAA domain; P 96.4 0.012 2.6E-07 51.7 7.8 24 184-207 1-24 (143)
147 PRK05541 adenylylsulfate kinas 96.4 0.0036 7.9E-08 57.4 4.5 36 182-217 7-42 (176)
148 PF00485 PRK: Phosphoribulokin 96.4 0.0028 6E-08 59.3 3.7 26 184-209 1-26 (194)
149 KOG4194 Membrane glycoprotein 96.4 0.00079 1.7E-08 70.4 -0.0 82 463-547 347-431 (873)
150 TIGR02237 recomb_radB DNA repa 96.4 0.011 2.3E-07 55.9 7.8 36 182-217 12-47 (209)
151 PRK14959 DNA polymerase III su 96.4 0.029 6.3E-07 61.1 11.7 49 159-207 12-63 (624)
152 TIGR01243 CDC48 AAA family ATP 96.4 0.0068 1.5E-07 68.6 7.3 49 161-209 176-239 (733)
153 KOG3678 SARM protein (with ste 96.4 0.017 3.8E-07 58.7 9.3 125 3-160 629-762 (832)
154 PF13238 AAA_18: AAA domain; P 96.4 0.0026 5.7E-08 54.7 3.2 22 185-206 1-22 (129)
155 PRK06647 DNA polymerase III su 96.4 0.059 1.3E-06 58.6 14.2 49 159-207 12-63 (563)
156 COG0466 Lon ATP-dependent Lon 96.4 0.0028 6E-08 68.3 3.8 48 163-210 323-378 (782)
157 TIGR02881 spore_V_K stage V sp 96.4 0.0026 5.7E-08 62.4 3.4 25 182-206 42-66 (261)
158 cd01123 Rad51_DMC1_radA Rad51_ 96.4 0.015 3.2E-07 56.1 8.6 36 182-217 19-60 (235)
159 TIGR01241 FtsH_fam ATP-depende 96.4 0.0062 1.3E-07 65.6 6.6 48 161-208 53-114 (495)
160 COG1222 RPT1 ATP-dependent 26S 96.4 0.0031 6.8E-08 62.5 3.8 48 163-210 151-213 (406)
161 COG2607 Predicted ATPase (AAA+ 96.4 0.014 3.1E-07 54.8 7.8 56 157-212 54-115 (287)
162 TIGR00064 ftsY signal recognit 96.3 0.017 3.8E-07 56.8 8.9 28 182-209 72-99 (272)
163 PRK15370 E3 ubiquitin-protein 96.3 0.0042 9.1E-08 69.6 5.1 61 481-550 241-301 (754)
164 PRK14965 DNA polymerase III su 96.3 0.2 4.3E-06 54.9 17.9 49 159-207 12-63 (576)
165 PRK14087 dnaA chromosomal repl 96.3 0.0088 1.9E-07 63.4 7.0 74 183-271 142-217 (450)
166 PLN03150 hypothetical protein; 96.3 0.0029 6.4E-08 70.0 3.4 64 482-551 419-486 (623)
167 PRK07667 uridine kinase; Provi 96.3 0.0058 1.3E-07 57.0 4.9 27 182-208 17-43 (193)
168 cd01394 radB RadB. The archaea 96.2 0.019 4.1E-07 54.6 8.5 36 182-217 19-54 (218)
169 PRK14086 dnaA chromosomal repl 96.2 0.07 1.5E-06 57.9 13.5 28 183-210 315-342 (617)
170 PRK13531 regulatory ATPase Rav 96.2 0.0069 1.5E-07 63.6 5.7 45 163-207 20-64 (498)
171 TIGR02639 ClpA ATP-dependent C 96.2 0.036 7.8E-07 62.7 11.9 45 163-207 454-509 (731)
172 cd01393 recA_like RecA is a b 96.2 0.025 5.4E-07 54.1 9.3 36 182-217 19-60 (226)
173 PRK15370 E3 ubiquitin-protein 96.2 0.006 1.3E-07 68.4 5.6 81 456-550 242-322 (754)
174 KOG0618 Serine/threonine phosp 96.2 0.00098 2.1E-08 73.3 -0.6 66 477-549 64-131 (1081)
175 CHL00095 clpC Clp protease ATP 96.2 0.036 7.7E-07 63.5 11.9 108 163-279 509-632 (821)
176 PF01583 APS_kinase: Adenylyls 96.2 0.0057 1.2E-07 54.5 4.3 35 183-217 3-37 (156)
177 PRK14948 DNA polymerase III su 96.2 0.37 7.9E-06 53.2 19.2 48 160-207 13-63 (620)
178 PF00448 SRP54: SRP54-type pro 96.2 0.0089 1.9E-07 55.8 5.7 35 182-216 1-35 (196)
179 KOG0738 AAA+-type ATPase [Post 96.2 0.075 1.6E-06 53.5 12.1 69 137-208 189-271 (491)
180 PRK11889 flhF flagellar biosyn 96.2 0.029 6.4E-07 57.3 9.6 28 182-209 241-268 (436)
181 PRK08903 DnaA regulatory inact 96.2 0.01 2.2E-07 56.9 6.2 48 160-207 15-67 (227)
182 PRK08939 primosomal protein Dn 96.1 0.022 4.8E-07 57.1 8.6 36 182-217 156-191 (306)
183 TIGR03346 chaperone_ClpB ATP-d 96.1 0.032 6.9E-07 64.1 11.0 47 163-209 565-622 (852)
184 KOG0618 Serine/threonine phosp 96.1 0.0012 2.7E-08 72.6 -0.4 84 461-551 25-110 (1081)
185 KOG0989 Replication factor C, 96.1 0.35 7.6E-06 47.4 16.1 59 158-216 31-93 (346)
186 PTZ00301 uridine kinase; Provi 96.1 0.0041 8.9E-08 58.7 3.0 27 183-209 4-30 (210)
187 PRK08451 DNA polymerase III su 96.1 0.19 4.1E-06 54.1 15.7 48 159-206 10-60 (535)
188 COG4088 Predicted nucleotide k 96.1 0.029 6.2E-07 51.6 8.0 27 183-209 2-28 (261)
189 PTZ00494 tuzin-like protein; P 96.0 0.063 1.4E-06 55.2 11.2 121 112-245 303-447 (664)
190 PRK15455 PrkA family serine pr 96.0 0.005 1.1E-07 65.5 3.5 47 163-209 76-130 (644)
191 PRK10865 protein disaggregatio 96.0 0.036 7.8E-07 63.5 10.7 46 162-207 567-623 (857)
192 PRK08233 hypothetical protein; 96.0 0.0049 1.1E-07 56.7 3.1 25 183-207 4-28 (182)
193 PF00560 LRR_1: Leucine Rich R 96.0 0.0021 4.5E-08 36.8 0.4 19 511-529 1-19 (22)
194 PRK12724 flagellar biosynthesi 96.0 0.047 1E-06 56.5 10.3 25 182-206 223-247 (432)
195 PRK03839 putative kinase; Prov 96.0 0.0052 1.1E-07 56.6 3.1 24 184-207 2-25 (180)
196 PRK07940 DNA polymerase III su 96.0 0.065 1.4E-06 55.6 11.4 44 163-206 5-60 (394)
197 KOG4579 Leucine-rich repeat (L 96.0 0.00079 1.7E-08 57.6 -2.2 80 463-549 59-140 (177)
198 PRK14955 DNA polymerase III su 96.0 0.0062 1.4E-07 63.6 3.9 49 159-207 12-63 (397)
199 cd02019 NK Nucleoside/nucleoti 95.9 0.006 1.3E-07 46.4 2.7 23 184-206 1-23 (69)
200 PRK11034 clpA ATP-dependent Cl 95.9 0.025 5.4E-07 63.6 8.5 45 163-207 458-513 (758)
201 PRK12726 flagellar biosynthesi 95.9 0.097 2.1E-06 53.4 11.9 36 182-217 206-241 (407)
202 PRK04040 adenylate kinase; Pro 95.9 0.0078 1.7E-07 55.9 3.8 25 183-207 3-27 (188)
203 PRK05480 uridine/cytidine kina 95.9 0.006 1.3E-07 57.7 3.1 25 182-206 6-30 (209)
204 PRK09280 F0F1 ATP synthase sub 95.9 0.023 5E-07 59.5 7.5 89 182-273 144-251 (463)
205 TIGR03345 VI_ClpV1 type VI sec 95.9 0.035 7.6E-07 63.5 9.6 47 163-209 566-623 (852)
206 PRK00625 shikimate kinase; Pro 95.9 0.0065 1.4E-07 55.5 3.1 24 184-207 2-25 (173)
207 PF00006 ATP-synt_ab: ATP synt 95.9 0.018 4E-07 54.4 6.2 85 182-272 15-117 (215)
208 PF08433 KTI12: Chromatin asso 95.8 0.0045 9.9E-08 60.7 2.1 26 183-208 2-27 (270)
209 TIGR02903 spore_lon_C ATP-depe 95.8 0.0079 1.7E-07 66.3 4.2 48 159-206 150-199 (615)
210 cd01129 PulE-GspE PulE/GspE Th 95.8 0.021 4.6E-07 56.0 6.9 98 171-278 68-167 (264)
211 PRK09270 nucleoside triphospha 95.8 0.0074 1.6E-07 58.0 3.5 28 182-209 33-60 (229)
212 PRK00131 aroK shikimate kinase 95.8 0.0079 1.7E-07 54.8 3.4 26 182-207 4-29 (175)
213 COG0572 Udk Uridine kinase [Nu 95.8 0.0094 2E-07 55.8 3.8 28 182-209 8-35 (218)
214 PRK06547 hypothetical protein; 95.8 0.011 2.4E-07 53.9 4.2 25 182-206 15-39 (172)
215 PF07726 AAA_3: ATPase family 95.7 0.0053 1.1E-07 52.4 1.8 28 185-212 2-29 (131)
216 KOG2004 Mitochondrial ATP-depe 95.7 0.0082 1.8E-07 64.6 3.6 48 163-210 411-466 (906)
217 PRK12597 F0F1 ATP synthase sub 95.7 0.03 6.5E-07 58.9 7.7 88 182-273 143-250 (461)
218 TIGR03305 alt_F1F0_F1_bet alte 95.7 0.045 9.7E-07 57.3 8.9 88 182-273 138-245 (449)
219 PRK05563 DNA polymerase III su 95.7 0.042 9.1E-07 59.9 9.1 48 159-206 12-62 (559)
220 PF00910 RNA_helicase: RNA hel 95.7 0.0054 1.2E-07 51.2 1.8 26 185-210 1-26 (107)
221 TIGR00235 udk uridine kinase. 95.7 0.0077 1.7E-07 56.9 3.1 26 182-207 6-31 (207)
222 KOG0729 26S proteasome regulat 95.7 0.054 1.2E-06 51.6 8.3 49 164-217 178-241 (435)
223 PRK13947 shikimate kinase; Pro 95.7 0.0082 1.8E-07 54.7 3.0 26 184-209 3-28 (171)
224 TIGR01039 atpD ATP synthase, F 95.7 0.035 7.5E-07 58.1 7.8 89 182-273 143-250 (461)
225 TIGR03574 selen_PSTK L-seryl-t 95.7 0.015 3.3E-07 56.6 5.0 25 184-208 1-25 (249)
226 cd01121 Sms Sms (bacterial rad 95.6 0.055 1.2E-06 55.7 9.1 81 182-270 82-168 (372)
227 TIGR00678 holB DNA polymerase 95.6 0.049 1.1E-06 50.5 8.0 26 182-207 14-39 (188)
228 PRK14722 flhF flagellar biosyn 95.6 0.034 7.4E-07 56.9 7.4 29 182-210 137-165 (374)
229 PRK10416 signal recognition pa 95.6 0.074 1.6E-06 53.6 9.7 28 182-209 114-141 (318)
230 PRK13765 ATP-dependent proteas 95.6 0.015 3.3E-07 63.7 5.2 78 159-242 27-105 (637)
231 TIGR00763 lon ATP-dependent pr 95.6 0.052 1.1E-06 61.8 9.6 48 163-210 320-375 (775)
232 PRK14971 DNA polymerase III su 95.6 0.71 1.5E-05 51.0 18.0 48 160-207 14-64 (614)
233 TIGR01243 CDC48 AAA family ATP 95.6 0.037 7.9E-07 62.7 8.3 48 163-210 453-515 (733)
234 PTZ00088 adenylate kinase 1; P 95.5 0.046 1E-06 52.3 7.7 23 184-206 8-30 (229)
235 cd02028 UMPK_like Uridine mono 95.5 0.014 3.1E-07 53.7 4.0 25 184-208 1-25 (179)
236 PRK15386 type III secretion pr 95.5 0.017 3.8E-07 59.4 5.0 58 482-551 73-134 (426)
237 PRK09112 DNA polymerase III su 95.5 0.015 3.2E-07 59.5 4.4 52 157-208 17-71 (351)
238 cd00227 CPT Chloramphenicol (C 95.5 0.013 2.7E-07 53.8 3.6 25 183-207 3-27 (175)
239 KOG0532 Leucine-rich repeat (L 95.5 0.0016 3.5E-08 68.0 -2.5 61 482-549 144-206 (722)
240 CHL00181 cbbX CbbX; Provisiona 95.5 0.02 4.3E-07 56.9 5.2 23 184-206 61-83 (287)
241 COG4608 AppF ABC-type oligopep 95.5 0.042 9.1E-07 53.0 7.1 87 182-270 39-137 (268)
242 cd01135 V_A-ATPase_B V/A-type 95.5 0.038 8.2E-07 53.9 6.9 88 182-273 69-179 (276)
243 TIGR01360 aden_kin_iso1 adenyl 95.5 0.011 2.5E-07 54.6 3.2 25 182-206 3-27 (188)
244 PRK14954 DNA polymerase III su 95.5 0.012 2.6E-07 64.4 3.8 49 159-207 12-63 (620)
245 KOG2982 Uncharacterized conser 95.5 0.0088 1.9E-07 57.8 2.4 69 474-547 90-161 (418)
246 PRK12678 transcription termina 95.4 0.032 6.9E-07 59.4 6.6 90 182-274 416-517 (672)
247 CHL00195 ycf46 Ycf46; Provisio 95.4 0.018 3.9E-07 61.4 5.0 48 162-209 227-286 (489)
248 TIGR01425 SRP54_euk signal rec 95.4 0.084 1.8E-06 55.1 9.7 28 182-209 100-127 (429)
249 cd00983 recA RecA is a bacter 95.4 0.053 1.1E-06 54.5 8.0 36 182-217 55-90 (325)
250 PRK08972 fliI flagellum-specif 95.4 0.033 7.2E-07 57.9 6.7 86 182-273 162-265 (444)
251 cd02023 UMPK Uridine monophosp 95.4 0.01 2.2E-07 55.6 2.7 23 184-206 1-23 (198)
252 PF08423 Rad51: Rad51; InterP 95.4 0.056 1.2E-06 52.8 7.9 31 174-204 26-60 (256)
253 TIGR01359 UMP_CMP_kin_fam UMP- 95.4 0.011 2.3E-07 54.6 2.8 23 184-206 1-23 (183)
254 TIGR03499 FlhF flagellar biosy 95.4 0.063 1.4E-06 53.3 8.4 27 182-208 194-220 (282)
255 PRK09111 DNA polymerase III su 95.4 0.013 2.9E-07 63.9 3.8 49 159-207 20-71 (598)
256 cd02020 CMPK Cytidine monophos 95.4 0.012 2.6E-07 52.0 2.9 24 184-207 1-24 (147)
257 TIGR02640 gas_vesic_GvpN gas v 95.4 0.018 3.9E-07 56.6 4.4 35 173-207 12-46 (262)
258 TIGR01650 PD_CobS cobaltochela 95.4 0.027 5.9E-07 56.3 5.6 51 160-210 42-92 (327)
259 PRK10536 hypothetical protein; 95.3 0.031 6.8E-07 53.9 5.7 54 162-215 54-109 (262)
260 TIGR02880 cbbX_cfxQ probable R 95.3 0.024 5.2E-07 56.3 5.2 44 164-207 23-83 (284)
261 PRK10787 DNA-binding ATP-depen 95.3 0.089 1.9E-06 59.6 10.3 48 163-210 322-377 (784)
262 TIGR01420 pilT_fam pilus retra 95.3 0.043 9.3E-07 56.1 7.1 97 175-277 114-212 (343)
263 cd02024 NRK1 Nicotinamide ribo 95.3 0.012 2.5E-07 54.4 2.7 23 184-206 1-23 (187)
264 PRK10867 signal recognition pa 95.3 0.25 5.5E-06 51.8 12.8 28 182-209 100-127 (433)
265 PRK05703 flhF flagellar biosyn 95.3 0.17 3.7E-06 53.1 11.6 36 182-217 221-258 (424)
266 cd02025 PanK Pantothenate kina 95.3 0.012 2.6E-07 56.1 2.7 24 184-207 1-24 (220)
267 PRK06217 hypothetical protein; 95.3 0.013 2.8E-07 54.1 2.9 24 184-207 3-26 (183)
268 COG1428 Deoxynucleoside kinase 95.3 0.014 3.1E-07 53.9 3.0 26 182-207 4-29 (216)
269 PRK13949 shikimate kinase; Pro 95.3 0.016 3.4E-07 52.8 3.3 25 183-207 2-26 (169)
270 cd02027 APSK Adenosine 5'-phos 95.3 0.079 1.7E-06 47.1 7.8 24 184-207 1-24 (149)
271 PF03205 MobB: Molybdopterin g 95.2 0.026 5.7E-07 49.6 4.6 35 183-217 1-36 (140)
272 PRK15387 E3 ubiquitin-protein 95.2 0.022 4.8E-07 63.8 5.0 13 480-492 301-313 (788)
273 cd00464 SK Shikimate kinase (S 95.2 0.015 3.2E-07 51.9 3.0 23 185-207 2-24 (154)
274 TIGR00150 HI0065_YjeE ATPase, 95.2 0.022 4.8E-07 49.3 4.0 25 182-206 22-46 (133)
275 TIGR02012 tigrfam_recA protein 95.2 0.041 8.9E-07 55.2 6.5 36 182-217 55-90 (321)
276 PRK13946 shikimate kinase; Pro 95.2 0.017 3.6E-07 53.5 3.4 27 182-208 10-36 (184)
277 KOG4194 Membrane glycoprotein 95.2 0.014 3E-07 61.5 3.0 81 462-549 83-166 (873)
278 PRK13948 shikimate kinase; Pro 95.2 0.017 3.7E-07 53.2 3.3 27 182-208 10-36 (182)
279 KOG0727 26S proteasome regulat 95.2 0.019 4.2E-07 54.1 3.6 47 164-210 156-217 (408)
280 cd01858 NGP_1 NGP-1. Autoanti 95.2 0.15 3.2E-06 45.7 9.5 22 183-204 103-124 (157)
281 COG0470 HolB ATPase involved i 95.2 0.077 1.7E-06 53.7 8.5 44 165-208 3-50 (325)
282 PRK00889 adenylylsulfate kinas 95.2 0.022 4.8E-07 52.1 4.1 27 182-208 4-30 (175)
283 PF03266 NTPase_1: NTPase; In 95.1 0.02 4.2E-07 52.1 3.6 31 185-215 2-33 (168)
284 PRK09354 recA recombinase A; P 95.1 0.082 1.8E-06 53.6 8.3 36 182-217 60-95 (349)
285 PRK12727 flagellar biosynthesi 95.1 0.11 2.3E-06 55.4 9.4 28 182-209 350-377 (559)
286 cd02021 GntK Gluconate kinase 95.1 0.015 3.3E-07 51.6 2.7 23 184-206 1-23 (150)
287 PRK14974 cell division protein 95.1 0.47 1E-05 48.1 13.7 28 182-209 140-167 (336)
288 cd00071 GMPK Guanosine monopho 95.1 0.017 3.6E-07 50.7 2.9 26 184-209 1-26 (137)
289 TIGR02322 phosphon_PhnN phosph 95.1 0.017 3.7E-07 53.1 3.1 25 183-207 2-26 (179)
290 PRK09087 hypothetical protein; 95.1 0.031 6.7E-07 53.5 4.9 25 182-206 44-68 (226)
291 PF00625 Guanylate_kin: Guanyl 95.1 0.026 5.7E-07 52.1 4.3 36 182-217 2-37 (183)
292 KOG0726 26S proteasome regulat 95.1 0.026 5.6E-07 54.4 4.3 48 163-210 185-247 (440)
293 TIGR00959 ffh signal recogniti 95.1 0.32 6.9E-06 51.0 12.7 26 182-207 99-124 (428)
294 cd03115 SRP The signal recogni 95.1 0.079 1.7E-06 48.3 7.4 26 184-209 2-27 (173)
295 COG1102 Cmk Cytidylate kinase 95.1 0.018 3.8E-07 50.9 2.8 25 184-208 2-26 (179)
296 TIGR02524 dot_icm_DotB Dot/Icm 95.0 0.084 1.8E-06 54.1 8.2 99 175-278 126-230 (358)
297 PF13504 LRR_7: Leucine rich r 95.0 0.013 2.9E-07 31.1 1.3 16 511-526 2-17 (17)
298 PRK08149 ATP synthase SpaL; Va 95.0 0.067 1.4E-06 55.8 7.5 86 182-273 151-254 (428)
299 COG0593 DnaA ATPase involved i 95.0 0.06 1.3E-06 55.5 7.1 35 182-216 113-147 (408)
300 COG1419 FlhF Flagellar GTP-bin 95.0 0.091 2E-06 53.7 8.2 36 182-217 203-240 (407)
301 PRK03846 adenylylsulfate kinas 95.0 0.028 6E-07 52.7 4.3 35 182-216 24-58 (198)
302 PRK12337 2-phosphoglycerate ki 95.0 0.013 2.7E-07 61.2 2.1 25 182-206 255-279 (475)
303 KOG1969 DNA replication checkp 95.0 0.066 1.4E-06 58.0 7.4 72 182-272 326-399 (877)
304 PF00560 LRR_1: Leucine Rich R 95.0 0.012 2.7E-07 33.6 1.1 20 533-552 1-20 (22)
305 KOG3665 ZYG-1-like serine/thre 95.0 0.0082 1.8E-07 66.7 0.7 62 475-544 167-232 (699)
306 TIGR02238 recomb_DMC1 meiotic 95.0 0.1 2.2E-06 52.5 8.4 31 174-204 84-118 (313)
307 PRK08927 fliI flagellum-specif 95.0 0.061 1.3E-06 56.2 7.0 86 182-273 158-261 (442)
308 TIGR00390 hslU ATP-dependent p 94.9 0.023 5E-07 58.6 3.7 29 182-210 47-75 (441)
309 COG0714 MoxR-like ATPases [Gen 94.9 0.028 6E-07 57.3 4.4 49 163-211 24-72 (329)
310 PRK12723 flagellar biosynthesi 94.9 0.21 4.5E-06 51.7 10.7 26 182-207 174-199 (388)
311 PF13504 LRR_7: Leucine rich r 94.9 0.014 3.1E-07 31.0 1.2 17 532-548 1-17 (17)
312 COG0542 clpA ATP-binding subun 94.9 0.025 5.3E-07 62.7 4.1 46 163-208 170-217 (786)
313 KOG0532 Leucine-rich repeat (L 94.9 0.0033 7.2E-08 65.7 -2.4 69 476-551 93-162 (722)
314 COG0468 RecA RecA/RadA recombi 94.9 0.073 1.6E-06 52.2 6.9 83 182-270 60-151 (279)
315 TIGR00764 lon_rel lon-related 94.9 0.044 9.5E-07 60.3 6.0 74 162-241 17-91 (608)
316 cd01120 RecA-like_NTPases RecA 94.9 0.029 6.3E-07 50.1 3.9 34 184-217 1-34 (165)
317 cd00116 LRR_RI Leucine-rich re 94.8 0.0089 1.9E-07 60.2 0.5 68 476-545 188-263 (319)
318 PRK05201 hslU ATP-dependent pr 94.8 0.03 6.4E-07 57.8 4.3 29 182-210 50-78 (443)
319 KOG0651 26S proteasome regulat 94.8 0.099 2.2E-06 51.1 7.4 29 182-210 166-194 (388)
320 COG1124 DppF ABC-type dipeptid 94.8 0.031 6.8E-07 52.8 4.0 27 182-208 33-59 (252)
321 PRK05057 aroK shikimate kinase 94.8 0.024 5.1E-07 51.8 3.2 25 183-207 5-29 (172)
322 PRK14528 adenylate kinase; Pro 94.8 0.11 2.4E-06 48.1 7.7 24 183-206 2-25 (186)
323 TIGR03263 guanyl_kin guanylate 94.8 0.022 4.8E-07 52.3 3.0 24 183-206 2-25 (180)
324 PRK06305 DNA polymerase III su 94.8 0.026 5.7E-07 59.8 3.9 48 160-207 14-64 (451)
325 PRK15387 E3 ubiquitin-protein 94.8 0.039 8.4E-07 62.0 5.4 62 480-550 241-320 (788)
326 PRK14530 adenylate kinase; Pro 94.8 0.023 5E-07 54.0 3.2 24 183-206 4-27 (215)
327 KOG2228 Origin recognition com 94.8 0.17 3.6E-06 50.2 9.0 109 161-270 22-147 (408)
328 PRK10751 molybdopterin-guanine 94.8 0.024 5.3E-07 51.5 3.1 27 182-208 6-32 (173)
329 COG0703 AroK Shikimate kinase 94.8 0.025 5.5E-07 50.9 3.1 28 183-210 3-30 (172)
330 PRK04296 thymidine kinase; Pro 94.8 0.033 7.3E-07 51.8 4.1 34 183-216 3-36 (190)
331 KOG1514 Origin recognition com 94.7 0.37 8.1E-06 52.3 12.2 107 161-270 394-518 (767)
332 COG1373 Predicted ATPase (AAA+ 94.7 0.14 3.1E-06 53.4 9.1 90 170-280 24-114 (398)
333 cd01136 ATPase_flagellum-secre 94.7 0.092 2E-06 52.8 7.4 86 182-273 69-172 (326)
334 COG1066 Sms Predicted ATP-depe 94.7 0.15 3.3E-06 51.9 8.8 89 173-270 80-178 (456)
335 PF00158 Sigma54_activat: Sigm 94.7 0.032 6.8E-07 50.7 3.7 41 165-205 1-45 (168)
336 COG1936 Predicted nucleotide k 94.7 0.025 5.4E-07 50.6 2.9 20 184-203 2-21 (180)
337 cd01130 VirB11-like_ATPase Typ 94.7 0.068 1.5E-06 49.5 6.0 90 180-277 23-117 (186)
338 TIGR01313 therm_gnt_kin carboh 94.7 0.02 4.4E-07 51.7 2.4 22 185-206 1-22 (163)
339 cd01132 F1_ATPase_alpha F1 ATP 94.7 0.07 1.5E-06 52.1 6.2 87 182-273 69-174 (274)
340 PRK04182 cytidylate kinase; Pr 94.7 0.026 5.6E-07 51.7 3.2 24 184-207 2-25 (180)
341 PF00437 T2SE: Type II/IV secr 94.7 0.033 7.1E-07 55.0 4.0 105 163-277 104-214 (270)
342 TIGR03497 FliI_clade2 flagella 94.7 0.22 4.8E-06 51.9 10.2 27 182-208 137-163 (413)
343 PRK03731 aroL shikimate kinase 94.7 0.027 5.9E-07 51.3 3.2 25 183-207 3-27 (171)
344 COG0563 Adk Adenylate kinase a 94.7 0.027 5.9E-07 51.6 3.1 22 184-205 2-23 (178)
345 PRK13975 thymidylate kinase; P 94.6 0.027 5.8E-07 52.6 3.1 26 183-208 3-28 (196)
346 PLN03187 meiotic recombination 94.6 0.14 3.1E-06 51.9 8.5 44 174-217 114-167 (344)
347 PRK06620 hypothetical protein; 94.6 0.025 5.5E-07 53.6 2.9 24 183-206 45-68 (214)
348 KOG1259 Nischarin, modulator o 94.6 0.012 2.7E-07 56.8 0.7 63 477-547 303-367 (490)
349 PRK10463 hydrogenase nickel in 94.6 0.05 1.1E-06 53.6 4.9 42 173-214 93-136 (290)
350 PF14532 Sigma54_activ_2: Sigm 94.6 0.02 4.4E-07 50.2 2.0 40 166-205 1-44 (138)
351 TIGR00176 mobB molybdopterin-g 94.6 0.032 7E-07 50.0 3.3 32 184-215 1-33 (155)
352 PRK00300 gmk guanylate kinase; 94.5 0.029 6.2E-07 52.8 3.1 25 182-206 5-29 (205)
353 PRK12339 2-phosphoglycerate ki 94.5 0.029 6.3E-07 52.4 3.1 24 183-206 4-27 (197)
354 KOG0739 AAA+-type ATPase [Post 94.5 1.2 2.6E-05 43.5 13.9 46 163-208 133-192 (439)
355 PF12775 AAA_7: P-loop contain 94.5 0.027 5.8E-07 55.5 2.9 26 182-207 33-58 (272)
356 PRK06936 type III secretion sy 94.5 0.089 1.9E-06 54.9 6.8 86 182-273 162-265 (439)
357 PRK10078 ribose 1,5-bisphospho 94.5 0.028 6E-07 52.1 2.9 25 183-207 3-27 (186)
358 COG4886 Leucine-rich repeat (L 94.5 0.011 2.3E-07 61.9 0.1 62 482-550 141-204 (394)
359 PRK11823 DNA repair protein Ra 94.5 0.084 1.8E-06 55.9 6.7 44 174-217 68-115 (446)
360 PF01078 Mg_chelatase: Magnesi 94.4 0.046 1E-06 50.9 4.1 42 163-204 3-44 (206)
361 KOG0730 AAA+-type ATPase [Post 94.4 0.04 8.7E-07 59.0 4.2 47 164-210 435-496 (693)
362 PRK05922 type III secretion sy 94.4 0.14 3E-06 53.5 8.1 86 182-273 157-260 (434)
363 PRK05973 replicative DNA helic 94.4 0.14 3E-06 49.2 7.5 36 182-217 64-99 (237)
364 KOG4237 Extracellular matrix p 94.4 0.011 2.3E-07 59.4 -0.0 68 473-547 266-337 (498)
365 PRK08154 anaerobic benzoate ca 94.4 0.038 8.3E-07 55.6 3.9 26 182-207 133-158 (309)
366 TIGR02782 TrbB_P P-type conjug 94.4 0.16 3.5E-06 50.8 8.2 94 176-277 126-221 (299)
367 PF13086 AAA_11: AAA domain; P 94.4 0.076 1.7E-06 50.6 5.8 36 171-206 6-41 (236)
368 PRK06002 fliI flagellum-specif 94.4 0.11 2.3E-06 54.4 7.1 25 182-206 165-189 (450)
369 PHA02244 ATPase-like protein 94.4 0.054 1.2E-06 55.0 4.7 46 163-208 96-145 (383)
370 COG4886 Leucine-rich repeat (L 94.4 0.022 4.9E-07 59.4 2.2 68 476-550 111-181 (394)
371 PF06068 TIP49: TIP49 C-termin 94.4 0.066 1.4E-06 54.0 5.3 54 162-215 23-83 (398)
372 CHL00060 atpB ATP synthase CF1 94.3 0.13 2.7E-06 54.4 7.6 88 182-273 161-275 (494)
373 TIGR02902 spore_lonB ATP-depen 94.3 0.034 7.4E-07 60.3 3.6 46 160-205 62-109 (531)
374 PRK15453 phosphoribulokinase; 94.3 0.054 1.2E-06 52.9 4.5 26 182-207 5-30 (290)
375 TIGR02173 cyt_kin_arch cytidyl 94.3 0.036 7.8E-07 50.3 3.2 23 184-206 2-24 (171)
376 KOG4237 Extracellular matrix p 94.3 0.0042 9.1E-08 62.2 -3.1 92 458-551 70-183 (498)
377 cd00544 CobU Adenosylcobinamid 94.3 0.24 5.2E-06 45.0 8.5 78 184-270 1-83 (169)
378 KOG3665 ZYG-1-like serine/thre 94.2 0.018 4E-07 64.0 1.3 14 531-544 249-262 (699)
379 COG0467 RAD55 RecA-superfamily 94.2 0.055 1.2E-06 53.0 4.5 36 182-217 23-58 (260)
380 KOG1051 Chaperone HSP104 and r 94.2 0.26 5.7E-06 55.6 10.2 97 163-272 562-672 (898)
381 COG0003 ArsA Predicted ATPase 94.2 0.061 1.3E-06 54.0 4.8 34 183-216 3-36 (322)
382 COG0529 CysC Adenylylsulfate k 94.2 0.054 1.2E-06 48.7 3.8 33 182-214 23-55 (197)
383 PF02456 Adeno_IVa2: Adenoviru 94.2 1.7 3.7E-05 42.7 14.2 35 183-217 88-124 (369)
384 KOG1532 GTPase XAB1, interacts 94.2 0.048 1E-06 52.2 3.7 31 182-212 19-49 (366)
385 PRK14527 adenylate kinase; Pro 94.2 0.041 9E-07 51.1 3.3 25 182-206 6-30 (191)
386 PF13245 AAA_19: Part of AAA d 94.2 0.18 3.9E-06 39.1 6.3 25 182-206 10-35 (76)
387 cd02034 CooC The accessory pro 94.2 0.09 2E-06 44.5 5.1 25 185-209 2-26 (116)
388 PRK13695 putative NTPase; Prov 94.1 0.048 1E-06 49.9 3.6 33 184-216 2-35 (174)
389 TIGR03878 thermo_KaiC_2 KaiC d 94.1 0.074 1.6E-06 52.1 5.2 36 182-217 36-71 (259)
390 PRK15386 type III secretion pr 94.1 0.058 1.3E-06 55.7 4.4 16 533-548 157-172 (426)
391 PRK14493 putative bifunctional 94.1 0.055 1.2E-06 53.2 4.2 34 183-217 2-35 (274)
392 COG1223 Predicted ATPase (AAA+ 94.1 0.054 1.2E-06 51.6 3.8 47 163-209 121-178 (368)
393 PRK06761 hypothetical protein; 94.1 0.061 1.3E-06 52.9 4.4 27 183-209 4-30 (282)
394 cd01983 Fer4_NifH The Fer4_Nif 94.1 0.036 7.9E-07 44.6 2.5 25 184-208 1-25 (99)
395 PTZ00035 Rad51 protein; Provis 94.1 0.25 5.5E-06 50.2 9.0 33 173-205 105-141 (337)
396 PRK05439 pantothenate kinase; 94.1 0.055 1.2E-06 54.0 4.1 27 182-208 86-112 (311)
397 PF03215 Rad17: Rad17 cell cyc 94.1 0.046 1E-06 58.7 3.8 51 164-216 20-77 (519)
398 PRK04220 2-phosphoglycerate ki 94.1 0.093 2E-06 52.0 5.6 25 182-206 92-116 (301)
399 PRK14526 adenylate kinase; Pro 94.1 0.22 4.7E-06 47.1 8.0 22 185-206 3-24 (211)
400 PRK05800 cobU adenosylcobinami 94.1 0.24 5.3E-06 45.0 8.0 24 183-206 2-25 (170)
401 TIGR00416 sms DNA repair prote 94.1 0.12 2.6E-06 54.8 6.9 45 173-217 81-129 (454)
402 cd01124 KaiC KaiC is a circadi 94.0 0.059 1.3E-06 49.7 4.0 34 184-217 1-34 (187)
403 COG0237 CoaE Dephospho-CoA kin 94.0 0.042 9.1E-07 51.3 3.0 22 183-204 3-24 (201)
404 PLN02200 adenylate kinase fami 94.0 0.043 9.3E-07 52.8 3.1 25 182-206 43-67 (234)
405 KOG3347 Predicted nucleotide k 94.0 0.043 9.3E-07 47.7 2.7 24 182-205 7-30 (176)
406 KOG0734 AAA+-type ATPase conta 94.0 0.054 1.2E-06 56.6 3.9 43 163-205 304-360 (752)
407 PF03193 DUF258: Protein of un 94.0 0.072 1.6E-06 47.7 4.3 35 170-205 24-58 (161)
408 PRK13768 GTPase; Provisional 94.0 0.063 1.4E-06 52.3 4.3 26 183-208 3-28 (253)
409 TIGR00554 panK_bact pantothena 93.9 0.043 9.3E-07 54.4 3.0 26 182-207 62-87 (290)
410 PRK06820 type III secretion sy 93.9 0.4 8.7E-06 50.2 10.3 25 182-206 163-187 (440)
411 COG0055 AtpD F0F1-type ATP syn 93.9 0.13 2.9E-06 51.4 6.3 87 182-271 147-252 (468)
412 TIGR03498 FliI_clade3 flagella 93.9 0.19 4.1E-06 52.5 7.8 86 182-273 140-243 (418)
413 PRK05342 clpX ATP-dependent pr 93.9 0.066 1.4E-06 55.9 4.5 28 183-210 109-136 (412)
414 PRK09825 idnK D-gluconate kina 93.9 0.05 1.1E-06 49.9 3.2 25 183-207 4-28 (176)
415 PF08477 Miro: Miro-like prote 93.9 0.05 1.1E-06 45.9 3.0 21 185-205 2-22 (119)
416 PRK14532 adenylate kinase; Pro 93.9 0.045 9.7E-07 50.7 2.9 22 185-206 3-24 (188)
417 cd01428 ADK Adenylate kinase ( 93.8 0.045 9.7E-07 50.8 2.9 22 185-206 2-23 (194)
418 cd01672 TMPK Thymidine monopho 93.8 0.12 2.7E-06 47.9 5.9 25 184-208 2-26 (200)
419 TIGR03324 alt_F1F0_F1_al alter 93.8 0.18 3.9E-06 53.4 7.5 87 182-273 162-267 (497)
420 COG2812 DnaX DNA polymerase II 93.8 0.68 1.5E-05 49.4 11.8 47 159-205 12-61 (515)
421 PF06564 YhjQ: YhjQ protein; 93.8 0.1 2.2E-06 50.0 5.2 35 183-217 2-37 (243)
422 PLN03186 DNA repair protein RA 93.8 0.23 5E-06 50.5 8.0 45 173-217 110-164 (342)
423 cd01857 HSR1_MMR1 HSR1/MMR1. 93.8 0.57 1.2E-05 41.0 9.7 51 30-82 3-53 (141)
424 TIGR02788 VirB11 P-type DNA tr 93.8 0.093 2E-06 52.8 5.2 91 182-276 144-234 (308)
425 PRK13407 bchI magnesium chelat 93.8 0.064 1.4E-06 54.3 4.0 48 159-206 4-53 (334)
426 cd02022 DPCK Dephospho-coenzym 93.7 0.045 9.8E-07 50.3 2.7 21 184-204 1-21 (179)
427 PRK14737 gmk guanylate kinase; 93.7 0.057 1.2E-06 50.0 3.3 25 182-206 4-28 (186)
428 PF13521 AAA_28: AAA domain; P 93.7 0.047 1E-06 49.3 2.7 21 185-205 2-22 (163)
429 KOG0733 Nuclear AAA ATPase (VC 93.7 0.044 9.6E-07 58.1 2.7 29 182-210 545-573 (802)
430 PF03029 ATP_bind_1: Conserved 93.7 0.065 1.4E-06 51.7 3.8 23 187-209 1-23 (238)
431 PRK14531 adenylate kinase; Pro 93.7 0.056 1.2E-06 49.9 3.2 24 183-206 3-26 (183)
432 COG0194 Gmk Guanylate kinase [ 93.7 0.073 1.6E-06 48.4 3.8 24 183-206 5-28 (191)
433 COG3640 CooC CO dehydrogenase 93.7 0.09 1.9E-06 49.5 4.4 26 184-209 2-27 (255)
434 PRK05688 fliI flagellum-specif 93.7 0.16 3.5E-06 53.2 6.9 86 182-273 168-271 (451)
435 COG0305 DnaB Replicative DNA h 93.7 0.43 9.4E-06 49.7 9.9 99 165-272 176-289 (435)
436 COG1763 MobB Molybdopterin-gua 93.7 0.057 1.2E-06 48.4 3.0 28 183-210 3-30 (161)
437 PF00005 ABC_tran: ABC transpo 93.7 0.06 1.3E-06 46.9 3.2 26 182-207 11-36 (137)
438 COG1224 TIP49 DNA helicase TIP 93.6 0.11 2.4E-06 51.7 5.2 53 160-212 36-95 (450)
439 TIGR00455 apsK adenylylsulfate 93.6 0.2 4.4E-06 46.1 6.9 26 182-207 18-43 (184)
440 cd00820 PEPCK_HprK Phosphoenol 93.6 0.058 1.3E-06 44.7 2.8 22 182-203 15-36 (107)
441 PF02367 UPF0079: Uncharacteri 93.6 0.087 1.9E-06 45.0 3.9 32 175-206 8-39 (123)
442 PF03308 ArgK: ArgK protein; 93.6 0.073 1.6E-06 51.1 3.8 28 182-209 29-56 (266)
443 TIGR03877 thermo_KaiC_1 KaiC d 93.6 0.11 2.3E-06 50.3 5.0 36 182-217 21-56 (237)
444 PF08298 AAA_PrkA: PrkA AAA do 93.6 0.067 1.4E-06 53.8 3.6 48 162-209 60-115 (358)
445 PF02374 ArsA_ATPase: Anion-tr 93.6 0.061 1.3E-06 53.9 3.4 26 183-208 2-27 (305)
446 TIGR01041 ATP_syn_B_arch ATP s 93.5 0.22 4.8E-06 52.5 7.6 89 182-273 141-251 (458)
447 cd01134 V_A-ATPase_A V/A-type 93.5 0.32 7E-06 49.0 8.3 34 182-217 157-190 (369)
448 smart00072 GuKc Guanylate kina 93.5 0.068 1.5E-06 49.4 3.5 29 183-211 3-31 (184)
449 PF06309 Torsin: Torsin; Inte 93.5 0.07 1.5E-06 45.4 3.2 24 182-205 53-76 (127)
450 TIGR00962 atpA proton transloc 93.5 0.21 4.6E-06 53.2 7.5 87 182-273 161-266 (501)
451 PRK01184 hypothetical protein; 93.5 0.058 1.3E-06 49.7 3.0 22 183-205 2-23 (184)
452 PRK05707 DNA polymerase III su 93.5 0.61 1.3E-05 47.3 10.5 25 182-206 22-46 (328)
453 cd02029 PRK_like Phosphoribulo 93.5 0.082 1.8E-06 51.3 4.0 25 184-208 1-25 (277)
454 PRK10733 hflB ATP-dependent me 93.5 0.12 2.7E-06 57.4 6.0 29 182-210 185-213 (644)
455 TIGR02239 recomb_RAD51 DNA rep 93.5 0.24 5.1E-06 50.0 7.5 23 182-204 96-118 (316)
456 TIGR03496 FliI_clade1 flagella 93.5 0.3 6.5E-06 50.9 8.4 86 182-273 137-240 (411)
457 PF00154 RecA: recA bacterial 93.4 0.21 4.6E-06 50.0 7.0 36 182-217 53-88 (322)
458 cd03116 MobB Molybdenum is an 93.4 0.093 2E-06 47.2 4.1 27 183-209 2-28 (159)
459 PLN02165 adenylate isopentenyl 93.4 0.065 1.4E-06 53.8 3.3 26 182-207 43-68 (334)
460 PRK07196 fliI flagellum-specif 93.4 0.17 3.8E-06 52.8 6.6 25 182-206 155-179 (434)
461 COG2019 AdkA Archaeal adenylat 93.4 0.068 1.5E-06 47.5 3.0 24 183-206 5-28 (189)
462 PLN02924 thymidylate kinase 93.4 0.25 5.4E-06 47.0 7.2 28 182-209 16-43 (220)
463 smart00369 LRR_TYP Leucine-ric 93.4 0.049 1.1E-06 32.4 1.5 20 531-550 1-20 (26)
464 smart00370 LRR Leucine-rich re 93.4 0.049 1.1E-06 32.4 1.5 20 531-550 1-20 (26)
465 cd03114 ArgK-like The function 93.3 0.092 2E-06 46.6 3.9 26 184-209 1-26 (148)
466 TIGR00017 cmk cytidylate kinas 93.3 0.07 1.5E-06 50.7 3.3 25 183-207 3-27 (217)
467 PRK07594 type III secretion sy 93.3 0.14 3E-06 53.5 5.7 26 182-207 155-180 (433)
468 CHL00059 atpA ATP synthase CF1 93.3 0.26 5.6E-06 52.0 7.7 87 182-273 141-246 (485)
469 PRK12338 hypothetical protein; 93.3 0.064 1.4E-06 53.6 3.0 25 182-206 4-28 (319)
470 cd01122 GP4d_helicase GP4d_hel 93.3 0.6 1.3E-05 45.9 10.0 36 182-217 30-66 (271)
471 PLN02348 phosphoribulokinase 93.3 0.066 1.4E-06 54.8 3.1 27 182-208 49-75 (395)
472 PHA02530 pseT polynucleotide k 93.3 0.063 1.4E-06 53.8 3.0 24 183-206 3-26 (300)
473 TIGR03881 KaiC_arch_4 KaiC dom 93.3 0.13 2.9E-06 49.2 5.1 36 182-217 20-55 (229)
474 PRK14738 gmk guanylate kinase; 93.2 0.068 1.5E-06 50.4 3.0 24 182-205 13-36 (206)
475 PRK02496 adk adenylate kinase; 93.2 0.067 1.5E-06 49.3 3.0 23 184-206 3-25 (184)
476 TIGR00073 hypB hydrogenase acc 93.2 0.099 2.1E-06 49.3 4.1 27 182-208 22-48 (207)
477 PRK14490 putative bifunctional 93.2 0.085 1.8E-06 54.6 3.9 31 182-212 5-35 (369)
478 TIGR02533 type_II_gspE general 93.2 0.21 4.6E-06 53.5 7.0 103 166-278 224-329 (486)
479 TIGR01026 fliI_yscN ATPase Fli 93.2 0.32 6.9E-06 51.2 8.2 26 182-207 163-188 (440)
480 PRK06995 flhF flagellar biosyn 93.2 0.85 1.8E-05 48.5 11.3 26 182-207 256-281 (484)
481 PRK04192 V-type ATP synthase s 93.2 1 2.3E-05 48.6 12.0 91 182-278 227-343 (586)
482 TIGR01287 nifH nitrogenase iro 93.2 0.1 2.2E-06 51.7 4.2 26 183-208 1-26 (275)
483 PRK14529 adenylate kinase; Pro 93.1 0.37 8E-06 45.8 7.8 91 184-278 2-95 (223)
484 TIGR02030 BchI-ChlI magnesium 93.1 0.12 2.7E-06 52.4 4.9 44 162-205 3-48 (337)
485 TIGR01351 adk adenylate kinase 93.1 0.069 1.5E-06 50.5 2.9 22 185-206 2-23 (210)
486 PF13604 AAA_30: AAA domain; P 93.1 0.17 3.6E-06 47.3 5.4 38 172-209 7-45 (196)
487 PRK08099 bifunctional DNA-bind 93.1 0.072 1.6E-06 55.4 3.2 25 182-206 219-243 (399)
488 PRK00279 adk adenylate kinase; 93.1 0.078 1.7E-06 50.3 3.3 23 184-206 2-24 (215)
489 PLN02796 D-glycerate 3-kinase 93.1 0.075 1.6E-06 53.6 3.2 27 182-208 100-126 (347)
490 COG2074 2-phosphoglycerate kin 93.1 0.2 4.4E-06 47.6 5.7 26 182-207 89-114 (299)
491 cd00116 LRR_RI Leucine-rich re 93.1 0.027 5.9E-07 56.7 0.0 89 455-545 108-206 (319)
492 KOG0531 Protein phosphatase 1, 93.0 0.049 1.1E-06 57.4 1.9 66 477-549 114-179 (414)
493 TIGR00382 clpX endopeptidase C 93.0 0.12 2.6E-06 53.8 4.7 28 183-210 117-144 (413)
494 PF00406 ADK: Adenylate kinase 93.0 0.073 1.6E-06 47.4 2.8 20 187-206 1-20 (151)
495 CHL00081 chlI Mg-protoporyphyr 93.0 0.1 2.3E-06 53.0 4.1 46 159-204 13-60 (350)
496 PRK05537 bifunctional sulfate 93.0 0.11 2.4E-06 56.6 4.6 46 163-208 369-418 (568)
497 COG0378 HypB Ni2+-binding GTPa 93.0 0.088 1.9E-06 48.2 3.1 36 183-218 14-49 (202)
498 KOG1970 Checkpoint RAD17-RFC c 93.0 0.12 2.6E-06 54.4 4.5 35 171-205 90-133 (634)
499 PRK08356 hypothetical protein; 93.0 0.075 1.6E-06 49.6 2.9 21 183-203 6-26 (195)
500 PRK09099 type III secretion sy 93.0 0.22 4.8E-06 52.2 6.6 87 182-274 163-267 (441)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.1e-95 Score=845.72 Aligned_cols=545 Identities=37% Similarity=0.665 Sum_probs=483.8
Q ss_pred ChhhHHHHHhhCCCeEeecCCCCCCCcccHHHHHHHHhccceeEeecCCccchhhhHHHHHHHHHhhhhcCCeEEeEEee
Q 037613 1 MTNYLYSALSRKSIETFIDDQLNRGDKISQSLVNAIEASTISVIIFSEGYASSRWCLDELLKILECKREYVQIVIPVFYR 80 (553)
Q Consensus 1 f~~~l~~~L~~~gi~~f~d~~~~~g~~~~~~~~~ai~~s~~~ivv~S~~y~~S~wcl~EL~~i~~~~~~~~~~vlPvfy~ 80 (553)
|+||||+||.++||+||+|+++++|+.|++++.+||++|+++|||||+|||+|+||||||++|++|++..+++|+||||+
T Consensus 28 f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~~i~~~~~~~~~~v~pvfy~ 107 (1153)
T PLN03210 28 FLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYG 107 (1153)
T ss_pred HHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHHHHHHHhhhhcCceEEEEEec
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcccccccCchHHHHHHHHHHhhhchhhHHHHHHHHHHhhhccCCccccccCCCCchhhhHHHHHHHHHhhhcCCCCC
Q 037613 81 VDPSDVRNQTGTFGDSFSKLEERFKENSKKLQSWRNALKEAASLSGFHSHNIRQLNLPESELTEEIVNHILKRLAELFPH 160 (553)
Q Consensus 81 v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~~~~w~~al~~v~~~~g~~~~~~~~~~~~e~~~i~~iv~~v~~~l~~~~~~ 160 (553)
|+|+|||+|+|+||++|.+++++.. .+++++||+||++|++++||++.++.+ |+++|++||++|.+++..+++.
T Consensus 108 v~p~~v~~~~g~f~~~f~~~~~~~~--~~~~~~w~~al~~~~~~~g~~~~~~~~----E~~~i~~Iv~~v~~~l~~~~~~ 181 (1153)
T PLN03210 108 LDPSHVRKQTGDFGEAFEKTCQNKT--EDEKIQWKQALTDVANILGYHSQNWPN----EAKMIEEIANDVLGKLNLTPSN 181 (1153)
T ss_pred ccHHHHhhccchHHHHHHHHhcccc--hhHHHHHHHHHHHHhCcCceecCCCCC----HHHHHHHHHHHHHHhhccccCc
Confidence 9999999999999999999887643 367999999999999999999988765 9999999999999999999888
Q ss_pred CCCCccchhhhHhhHHhhccc----cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEec--hhh---hc-----cc
Q 037613 161 NNDRLVGVESRVVAIESLLSA----APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENV--REE---SQ-----RL 226 (553)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~----~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~--~~~---s~-----~~ 226 (553)
+.+++|||+++++++..+|.. +++|+||||||+||||||+++|+++..+|+..+|+.+. +.. .. ..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~ 261 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDY 261 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhccccccccc
Confidence 999999999999999998864 88999999999999999999999999999999998642 111 00 00
Q ss_pred CCHHHHHHHHHHhhccC-CCCcccHHHHHHHhcCCCeEEEEcCCCChHhHHHhhccc-----------------------
Q 037613 227 GGLACLRQKLLSNLFRD-ESMIPDIDLHFKRLSRRKVLVVFDDVTCFNQIESFIGSL----------------------- 282 (553)
Q Consensus 227 ~~~~~l~~~ll~~l~~~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~----------------------- 282 (553)
.....++.+++..+... +........++++|+++|+||||||||+.++|+.+.+..
T Consensus 262 ~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~ 341 (1153)
T PLN03210 262 NMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHG 341 (1153)
T ss_pred chhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcC
Confidence 11345666777766554 222334467889999999999999999999988875421
Q ss_pred ------------------hhhhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHHHhhhcCCCHHHHHHHHHHHhhcCCch
Q 037613 283 ------------------ECRHAFKQNHPDVGYEELSSKVIQHAQGVPLALKVLGCFLFGWEKKVWESAINKLKQILHPK 344 (553)
Q Consensus 283 ------------------~~~~af~~~~~~~~~~~~~~~iv~~c~glPLal~~~g~~L~~~~~~~w~~~l~~l~~~~~~~ 344 (553)
|+++||+...+++++.+++++|+++|+|+||||+++|++|++++..+|+.++.++++.++.+
T Consensus 342 ~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~ 421 (1153)
T PLN03210 342 IDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGK 421 (1153)
T ss_pred CCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHH
Confidence 89999998877778999999999999999999999999999999999999999999988889
Q ss_pred HHHHHHHhHhhhcH-HHHHhhhhhhcccCCCChHHHHHHHHhcCccHHHHHHHHhhcCceeeeCCCceehhHHHHHHHHH
Q 037613 345 IHDVLKLSYDDLDV-NEKGIFLDVACFFKSDDVYPVMKFLDASGFHLEIGISVLADKSLIDVNPYDRITMHDLLQELGRE 423 (553)
Q Consensus 345 i~~~l~~Sy~~L~~-~~k~~fl~~a~fp~~~~~~~l~~~~~~~g~~~~~~l~~L~~~sLi~~~~~~~~~mHdlv~~~a~~ 423 (553)
|.++|++||+.|++ .+|.||++|||||.+.+.+.+..++..+++.+..+++.|+++|||++. .+++.||||+|+||++
T Consensus 422 I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~ 500 (1153)
T PLN03210 422 IEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKE 500 (1153)
T ss_pred HHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEc-CCeEEhhhHHHHHHHH
Confidence 99999999999986 699999999999999999998888888888888999999999999987 6789999999999999
Q ss_pred HHhhhcCCCCCccccccchhhHHHhhcCCCCcccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCcccc
Q 037613 424 IVRQESINPGNQSRLWHHEDMYEILTNNTGTKSIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYL 503 (553)
Q Consensus 424 i~~~e~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~l 503 (553)
++++++..|++++++|.+.|+..++..++++..+++|+++++......+...+|.+|++||+|++++..........-.+
T Consensus 501 i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~l 580 (1153)
T PLN03210 501 IVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHL 580 (1153)
T ss_pred HHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeec
Confidence 99999888999999999999999999999999999999999988888999999999999999999764311100011123
Q ss_pred CCCCC-C-CCeeEEEecCCCCCCCCCCCCCCCccEEEcCCCCcccCCCCCC
Q 037613 504 QESPG-F-AEVRFLHRHGYPLKSLPSNINQKKLVVIEMPHSNIQQFWDGTR 552 (553)
Q Consensus 504 p~~i~-L-~~Lr~L~l~~~~l~~LP~~i~L~~L~~L~l~~s~i~~lp~~~~ 552 (553)
|+.+. + .+||+|+|.++++++||..+.+.+|++|+|+++++++||.+++
T Consensus 581 p~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~ 631 (1153)
T PLN03210 581 PEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVH 631 (1153)
T ss_pred CcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccc
Confidence 43332 2 7899999999999999999999999999999999999999875
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-55 Score=486.70 Aligned_cols=369 Identities=25% Similarity=0.337 Sum_probs=306.0
Q ss_pred cchhhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhh---hcCCCCceEEEEechhhhcccCCHHHHHHHHHHhh
Q 037613 166 VGVESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDK---ISSDFEGSCFLENVREESQRLGGLACLRQKLLSNL 240 (553)
Q Consensus 166 vGr~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~---~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l 240 (553)
||.+..++++...|.. ..+++|+||||+||||||+.++|+ +..+|+..+|+. +|+. +....++.+|+..+
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~-f~~~~iq~~Il~~l 235 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKE-FTTRKIQQTILERL 235 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----Eccc-ccHHhHHHHHHHHh
Confidence 9999999999999977 789999999999999999999993 788999999999 7777 99999999999988
Q ss_pred ccCCCC------cccHHHHHHHhcCCCeEEEEcCCCChHhHHHhhccc--------------------------------
Q 037613 241 FRDESM------IPDIDLHFKRLSRRKVLVVFDDVTCFNQIESFIGSL-------------------------------- 282 (553)
Q Consensus 241 ~~~~~~------~~~~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~-------------------------------- 282 (553)
+..+.. .+....+.+.|++|||+|||||||+..+|+.+..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~ 315 (889)
T KOG4658|consen 236 GLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVE 315 (889)
T ss_pred ccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccccc
Confidence 774221 156778899999999999999999999998876443
Q ss_pred ----------hhhhhcCCC-CCCCcHHHHHHHHHHHhcCCchhHHHHHhhhcCC-CHHHHHHHHHHHhhc-------CCc
Q 037613 283 ----------ECRHAFKQN-HPDVGYEELSSKVIQHAQGVPLALKVLGCFLFGW-EKKVWESAINKLKQI-------LHP 343 (553)
Q Consensus 283 ----------~~~~af~~~-~~~~~~~~~~~~iv~~c~glPLal~~~g~~L~~~-~~~~w~~~l~~l~~~-------~~~ 343 (553)
|++.+|... ...+..+++|++++++|+|+|||+.++|+.|+.+ +..+|+.+...+... ..+
T Consensus 316 ~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~ 395 (889)
T KOG4658|consen 316 CLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEE 395 (889)
T ss_pred ccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhh
Confidence 777777653 3445589999999999999999999999999986 678999999998664 235
Q ss_pred hHHHHHHHhHhhhcHHHHHhhhhhhcccCCC--ChHHHHHHHHhcCcc------------HHHHHHHHhhcCceeeeCC-
Q 037613 344 KIHDVLKLSYDDLDVNEKGIFLDVACFFKSD--DVYPVMKFLDASGFH------------LEIGISVLADKSLIDVNPY- 408 (553)
Q Consensus 344 ~i~~~l~~Sy~~L~~~~k~~fl~~a~fp~~~--~~~~l~~~~~~~g~~------------~~~~l~~L~~~sLi~~~~~- 408 (553)
.+..++++|||.||++.|.||+|||.||+++ +.+.++.+|+|+||+ +.+++++|++++|+.....
T Consensus 396 ~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~ 475 (889)
T KOG4658|consen 396 SILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE 475 (889)
T ss_pred hhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc
Confidence 7899999999999999999999999999995 799999999999976 3568999999999997642
Q ss_pred ---CceehhHHHHHHHHHHHh-----hhc--CCC-------------CCccccccchhhHHHhhcCCCCcccccccccCC
Q 037613 409 ---DRITMHDLLQELGREIVR-----QES--INP-------------GNQSRLWHHEDMYEILTNNTGTKSIEGICLDMS 465 (553)
Q Consensus 409 ---~~~~mHdlv~~~a~~i~~-----~e~--~~~-------------~~~~~l~~~~~~~~~l~~~~~~~~~~~i~l~~~ 465 (553)
..|+|||+||+||.+++. .++ ... ...++++..............+.+++++.+...
T Consensus 476 ~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n 555 (889)
T KOG4658|consen 476 GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRN 555 (889)
T ss_pred cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeec
Confidence 469999999999999999 332 111 112233333333334444444556666665544
Q ss_pred CccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCC
Q 037613 466 KANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSLPSNI-NQKKLVVIEMPHSN 543 (553)
Q Consensus 466 ~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~~s~ 543 (553)
......++..+|..|+.||||||++|. .+..||++|+ |.|||||++++|.+++||.++ +|++|++||+.++.
T Consensus 556 ~~~l~~is~~ff~~m~~LrVLDLs~~~------~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 556 SDWLLEISGEFFRSLPLLRVLDLSGNS------SLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTG 629 (889)
T ss_pred chhhhhcCHHHHhhCcceEEEECCCCC------ccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccc
Confidence 322466788899999999999999875 7778999997 999999999999999999999 89999999999876
Q ss_pred cc
Q 037613 544 IQ 545 (553)
Q Consensus 544 i~ 545 (553)
-.
T Consensus 630 ~l 631 (889)
T KOG4658|consen 630 RL 631 (889)
T ss_pred cc
Confidence 43
No 3
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=6.6e-37 Score=271.74 Aligned_cols=136 Identities=32% Similarity=0.546 Sum_probs=123.1
Q ss_pred ChhhHHHHHhhCCCeEeecC-CCCCCCcccHHHHHHHHhccceeEeecCCccchhhhHHHHHHHHHhhhhcCCeEEeEEe
Q 037613 1 MTNYLYSALSRKSIETFIDD-QLNRGDKISQSLVNAIEASTISVIIFSEGYASSRWCLDELLKILECKREYVQIVIPVFY 79 (553)
Q Consensus 1 f~~~l~~~L~~~gi~~f~d~-~~~~g~~~~~~~~~ai~~s~~~ivv~S~~y~~S~wcl~EL~~i~~~~~~~~~~vlPvfy 79 (553)
|++|||.+|+++||+||+|+ ++++|+.|.++|.+||++|+++|||||++||+|+||++||++|++|+ ..|+||||
T Consensus 42 FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~~I~e~~----~~ViPIFY 117 (187)
T PLN03194 42 IATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELALIMESK----KRVIPIFC 117 (187)
T ss_pred HHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHHHHHHcC----CEEEEEEe
Confidence 89999999999999999999 99999999999999999999999999999999999999999999874 47999999
Q ss_pred eeCCcccccc-cCchHHHHHHHHHHhhhchhhHHHHHHHHHHhhhccCCccccccCCCCchhhhHHHHHHHHHhhhcC
Q 037613 80 RVDPSDVRNQ-TGTFGDSFSKLEERFKENSKKLQSWRNALKEAASLSGFHSHNIRQLNLPESELTEEIVNHILKRLAE 156 (553)
Q Consensus 80 ~v~p~~vr~~-~g~~~~~~~~~~~~~~~~~~~~~~w~~al~~v~~~~g~~~~~~~~~~~~e~~~i~~iv~~v~~~l~~ 156 (553)
+|+|++||+| .|.+ ..+++++||+||++|++++|+++... +++|+++|++|++.|.+++..
T Consensus 118 ~VdPsdVr~q~~~~~-------------~~e~v~~Wr~AL~~va~l~G~~~~~~---~~~e~e~i~~iv~~v~k~l~~ 179 (187)
T PLN03194 118 DVKPSQLRVVDNGTC-------------PDEEIRRFNWALEEAKYTVGLTFDSL---KGNWSEVVTMASDAVIKNLIE 179 (187)
T ss_pred cCCHHHhhccccCCC-------------CHHHHHHHHHHHHHHhccccccCCCC---CCCHHHHHHHHHHHHHHHHHH
Confidence 9999999997 4431 23689999999999999999987643 256999999999999987643
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.98 E-value=1.5e-32 Score=274.70 Aligned_cols=219 Identities=27% Similarity=0.400 Sum_probs=172.9
Q ss_pred hhhhHhhHHhhccc----cCEEEEeecCCCchHHHHHHHHhh--hcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhc
Q 037613 168 VESRVVAIESLLSA----APLLAIWGIGGIGKTTIARATFDK--ISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLF 241 (553)
Q Consensus 168 r~~~~~~l~~~L~~----~~vi~I~G~gGiGKTtLA~~v~~~--~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~ 241 (553)
||.++++|.+.|.. .++|+|+||||+||||||.+++++ +..+|+.++|+. .+.. .....++.+++..+.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~----~~~~-~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS----LSKN-PSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE----EES--SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc----cccc-ccccccccccccccc
Confidence 68889999888866 889999999999999999999997 899999999997 3333 556888888998887
Q ss_pred cCCCC----c---ccHHHHHHHhcCCCeEEEEcCCCChHhHHHhhccc--------------------------------
Q 037613 242 RDESM----I---PDIDLHFKRLSRRKVLVVFDDVTCFNQIESFIGSL-------------------------------- 282 (553)
Q Consensus 242 ~~~~~----~---~~~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~-------------------------------- 282 (553)
..... . +....+++.|+++++||||||||+...|+.+....
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~ 155 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELE 155 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECS
T ss_pred ccccccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 76221 1 56788899999999999999999999886554221
Q ss_pred ----------hhhhhcCCC-CCCCcHHHHHHHHHHHhcCCchhHHHHHhhhcCC-CHHHHHHHHHHHhhcC------Cch
Q 037613 283 ----------ECRHAFKQN-HPDVGYEELSSKVIQHAQGVPLALKVLGCFLFGW-EKKVWESAINKLKQIL------HPK 344 (553)
Q Consensus 283 ----------~~~~af~~~-~~~~~~~~~~~~iv~~c~glPLal~~~g~~L~~~-~~~~w~~~l~~l~~~~------~~~ 344 (553)
|...++... .+.+..++.+++|+++|+|+||||+++|++|+.+ +..+|+.+++++.... ...
T Consensus 156 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~ 235 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRS 235 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 555555544 2344556789999999999999999999999653 6789999998876543 367
Q ss_pred HHHHHHHhHhhhcHHHHHhhhhhhcccCCC--ChHHHHHHHHhcCccHH
Q 037613 345 IHDVLKLSYDDLDVNEKGIFLDVACFFKSD--DVYPVMKFLDASGFHLE 391 (553)
Q Consensus 345 i~~~l~~Sy~~L~~~~k~~fl~~a~fp~~~--~~~~l~~~~~~~g~~~~ 391 (553)
+..++.+||+.|++++|+||++||+||.+. +.+.++++|.++|++..
T Consensus 236 ~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 236 VFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 999999999999999999999999999885 69999999999998754
No 5
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.77 E-value=7.5e-20 Score=162.30 Aligned_cols=119 Identities=29% Similarity=0.491 Sum_probs=105.4
Q ss_pred ChhhHHHHHhhC--CCeEeecC-CCCCCCcccHHHHHHHHhccceeEeecCCccchhhhHHHHHHHHHhhhhcC--CeEE
Q 037613 1 MTNYLYSALSRK--SIETFIDD-QLNRGDKISQSLVNAIEASTISVIIFSEGYASSRWCLDELLKILECKREYV--QIVI 75 (553)
Q Consensus 1 f~~~l~~~L~~~--gi~~f~d~-~~~~g~~~~~~~~~ai~~s~~~ivv~S~~y~~S~wcl~EL~~i~~~~~~~~--~~vl 75 (553)
|++||+.+|++. |+++|+++ |+.+|..+.+++.++|++|+++|+|||++|++|.||+.||..++++....+ .+|+
T Consensus 14 ~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~~~~~~~~~~~~Il 93 (141)
T PF01582_consen 14 FVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEALERLLEEGRDKLIL 93 (141)
T ss_dssp HHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHHHHHHCSTCTTEEE
T ss_pred HHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhhhhcccccccccee
Confidence 689999999999 99999999 999999999999999999999999999999999999999999999996644 8999
Q ss_pred eEEeeeCCcccc-cccCchHHHHHHHHHHhhhc--hhhHHHHHHHHH
Q 037613 76 PVFYRVDPSDVR-NQTGTFGDSFSKLEERFKEN--SKKLQSWRNALK 119 (553)
Q Consensus 76 Pvfy~v~p~~vr-~~~g~~~~~~~~~~~~~~~~--~~~~~~w~~al~ 119 (553)
|+||+|.+++++ .+.+.|...|..+.....+. ..+...|++++.
T Consensus 94 ~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 94 PVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp EESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred eEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 999999999999 78998988888776665554 457889998864
No 6
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.57 E-value=1.6e-14 Score=127.95 Aligned_cols=120 Identities=38% Similarity=0.601 Sum_probs=99.7
Q ss_pred ChhhHHHHHhhCCCeEeecCCCCCCCcccHHHHHHHHhccceeEeecCCccchhhhHHHHHHHHHhhhh-cCCeEEeEEe
Q 037613 1 MTNYLYSALSRKSIETFIDDQLNRGDKISQSLVNAIEASTISVIIFSEGYASSRWCLDELLKILECKRE-YVQIVIPVFY 79 (553)
Q Consensus 1 f~~~l~~~L~~~gi~~f~d~~~~~g~~~~~~~~~ai~~s~~~ivv~S~~y~~S~wcl~EL~~i~~~~~~-~~~~vlPvfy 79 (553)
|+.+|..+|...|+.+|.|+....|... .+|.++|++|++.|+|+|++|..|.||..|+..+.++... ....|+||+|
T Consensus 18 ~v~~L~~~l~~~~~~v~~d~~~~~~~~~-~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a~~~~~~~~~~~iIPI~~ 96 (140)
T smart00255 18 FLSHLLEKLRGYGLCVFIDDFEPGGGDL-EEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFY 96 (140)
T ss_pred HHHHHHHHhhcCCcEEEecCcccccchH-HHHHHHHHHCcEEEEEECcccccChhHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 5778999999999999999844333333 3999999999999999999999999999999999988754 6679999999
Q ss_pred eeCCcccccccCchHHHHHHHHHHhhhchhhHHHHHHHHHHhh
Q 037613 80 RVDPSDVRNQTGTFGDSFSKLEERFKENSKKLQSWRNALKEAA 122 (553)
Q Consensus 80 ~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~~~~w~~al~~v~ 122 (553)
+..|+.+..+.+.++..+..+..++.+...+ ..|++++..+.
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~ 138 (140)
T smart00255 97 EVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVP 138 (140)
T ss_pred ecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhc
Confidence 9999999999999999988875555443322 68999887765
No 7
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.30 E-value=2.6e-10 Score=132.23 Aligned_cols=258 Identities=16% Similarity=0.132 Sum_probs=158.7
Q ss_pred CCCCCCCccchhhhHhhHHhhccccCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHH
Q 037613 158 FPHNNDRLVGVESRVVAIESLLSAAPLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLL 237 (553)
Q Consensus 158 ~~~~~~~~vGr~~~~~~l~~~L~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll 237 (553)
+|..+..+|-|...++.+... ...+++.|+|++|.||||++..+.++ ++.++|+. +.+ ...+...+...++
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~~----~~~~~w~~-l~~---~d~~~~~f~~~l~ 79 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSGA-NNYRLVLVTSPAGYGKTTLISQWAAG----KNNLGWYS-LDE---SDNQPERFASYLI 79 (903)
T ss_pred CCCCccccCcchHHHHHHhcc-cCCCeEEEECCCCCCHHHHHHHHHHh----CCCeEEEe-cCc---ccCCHHHHHHHHH
Confidence 556667899998877777543 23789999999999999999998864 23678886 322 2144455555555
Q ss_pred HhhccCCCC--------------cc---cHHHHHHHhc--CCCeEEEEcCCCChH------hHHHhhccc----------
Q 037613 238 SNLFRDESM--------------IP---DIDLHFKRLS--RRKVLVVFDDVTCFN------QIESFIGSL---------- 282 (553)
Q Consensus 238 ~~l~~~~~~--------------~~---~~~~l~~~L~--~kr~LlVLDdv~~~~------~l~~l~~~~---------- 282 (553)
..+...... .. ....+...+. +.+++|||||+...+ .+..++...
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~s 159 (903)
T PRK04841 80 AALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLS 159 (903)
T ss_pred HHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEe
Confidence 555321000 01 1122222222 678999999996542 333333211
Q ss_pred -----hhhh----------------hcC---------CCCCCCcHHHHHHHHHHHhcCCchhHHHHHhhhcCCCHHHHHH
Q 037613 283 -----ECRH----------------AFK---------QNHPDVGYEELSSKVIQHAQGVPLALKVLGCFLFGWEKKVWES 332 (553)
Q Consensus 283 -----~~~~----------------af~---------~~~~~~~~~~~~~~iv~~c~glPLal~~~g~~L~~~~~~~w~~ 332 (553)
+... .|. .....+-..+.+.+|.+.|+|.|+++..++..+...+.. ...
T Consensus 160 R~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~ 238 (903)
T PRK04841 160 RNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQNNSS-LHD 238 (903)
T ss_pred CCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhh
Confidence 0000 111 000111123556789999999999999999877543210 011
Q ss_pred HHHHHhhcCCchHHHHHHH-hHhhhcHHHHHhhhhhhcccCCCChHHHHHHHHhcCccHHHHHHHHhhcCceee-eC-C-
Q 037613 333 AINKLKQILHPKIHDVLKL-SYDDLDVNEKGIFLDVACFFKSDDVYPVMKFLDASGFHLEIGISVLADKSLIDV-NP-Y- 408 (553)
Q Consensus 333 ~l~~l~~~~~~~i~~~l~~-Sy~~L~~~~k~~fl~~a~fp~~~~~~~l~~~~~~~g~~~~~~l~~L~~~sLi~~-~~-~- 408 (553)
....+.......+...+.- .++.||++.++.++..|+++ .++.+.+..+.. .-.....++.|.+.+++.. .+ +
T Consensus 239 ~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~--~~~~~~~L~~l~~~~l~~~~~~~~~ 315 (903)
T PRK04841 239 SARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTG--EENGQMRLEELERQGLFIQRMDDSG 315 (903)
T ss_pred hhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcC--CCcHHHHHHHHHHCCCeeEeecCCC
Confidence 1122221123446665444 48899999999999999986 677665555443 2235778999999999653 22 2
Q ss_pred CceehhHHHHHHHHHHHhhh
Q 037613 409 DRITMHDLLQELGREIVRQE 428 (553)
Q Consensus 409 ~~~~mHdlv~~~a~~i~~~e 428 (553)
..|++|++++++.+.....+
T Consensus 316 ~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 316 EWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred CEEehhHHHHHHHHHHHHhc
Confidence 35999999999999876433
No 8
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.07 E-value=3.9e-11 Score=99.99 Aligned_cols=76 Identities=26% Similarity=0.434 Sum_probs=63.4
Q ss_pred ChhhHHHHHhhCCCeEeecCCCCCCCcccHHHHHHHHhccceeEeecCCccchhhhHHHHHHHHHhhhhcCCeEEeEEee
Q 037613 1 MTNYLYSALSRKSIETFIDDQLNRGDKISQSLVNAIEASTISVIIFSEGYASSRWCLDELLKILECKREYVQIVIPVFYR 80 (553)
Q Consensus 1 f~~~l~~~L~~~gi~~f~d~~~~~g~~~~~~~~~ai~~s~~~ivv~S~~y~~S~wcl~EL~~i~~~~~~~~~~vlPvfy~ 80 (553)
|+..|.+.|+++|+++|+|.++.+|+.+...+.++|++|+..|+++|++|..|.||..|+..+. ..+..|+||..+
T Consensus 12 ~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~----~~~~~iipv~~~ 87 (102)
T PF13676_consen 12 FAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAW----KRGKPIIPVRLD 87 (102)
T ss_dssp CHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHH----CTSESEEEEECS
T ss_pred HHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHH----HCCCEEEEEEEC
Confidence 5678999999999999999988999999999999999999999999999999999999998773 344579999743
No 9
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.97 E-value=5.9e-08 Score=101.54 Aligned_cols=108 Identities=18% Similarity=0.243 Sum_probs=75.3
Q ss_pred CCCCCccchhhhHhhHHhhccc------cCEEEEeecCCCchHHHHHHHHhhhcCCCCc--eEEEEechhhhcccCCHHH
Q 037613 160 HNNDRLVGVESRVVAIESLLSA------APLLAIWGIGGIGKTTIARATFDKISSDFEG--SCFLENVREESQRLGGLAC 231 (553)
Q Consensus 160 ~~~~~~vGr~~~~~~l~~~L~~------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~s~~~~~~~~ 231 (553)
..++.++||++++++|...+.. ...+.|+|++|+|||++++.++++.....+. .+++. .. .. .+...
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in-~~---~~-~~~~~ 101 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN-CQ---ID-RTRYA 101 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE-CC---cC-CCHHH
Confidence 3557899999999999998844 4678999999999999999999977655422 23332 21 12 45667
Q ss_pred HHHHHHHhhccC-CC--Cc---ccHHHHHHHhc--CCCeEEEEcCCCCh
Q 037613 232 LRQKLLSNLFRD-ES--MI---PDIDLHFKRLS--RRKVLVVFDDVTCF 272 (553)
Q Consensus 232 l~~~ll~~l~~~-~~--~~---~~~~~l~~~L~--~kr~LlVLDdv~~~ 272 (553)
+...++.++... .. .. +....+.+.+. +++.+||||+++..
T Consensus 102 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l 150 (394)
T PRK00411 102 IFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYL 150 (394)
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHh
Confidence 788888887652 11 11 33455555554 45689999999764
No 10
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.91 E-value=2e-08 Score=101.28 Aligned_cols=232 Identities=16% Similarity=0.156 Sum_probs=130.2
Q ss_pred CCccchhhhHhhHHhhccc-------cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHH
Q 037613 163 DRLVGVESRVVAIESLLSA-------APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQK 235 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~-------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ 235 (553)
..|||+++.++++..++.. ...+.++|++|+|||+||+.++++....+. +......... ..+...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~~~~~~~~-~~l~~~--- 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSGPALEKP-GDLAAI--- 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----EeccchhcCc-hhHHHH---
Confidence 4699999999999888863 456889999999999999999997754431 1111001111 122222
Q ss_pred HHHhhccCC-------C--CcccHHHHHHHhcCCCeEEEEcCCCChHhHHHhhccc-------------------hhhh-
Q 037613 236 LLSNLFRDE-------S--MIPDIDLHFKRLSRRKVLVVFDDVTCFNQIESFIGSL-------------------ECRH- 286 (553)
Q Consensus 236 ll~~l~~~~-------~--~~~~~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~-------------------~~~~- 286 (553)
+..+.... . .....+.+...+.+.+..+|+|+..+..++....+.. |...
T Consensus 76 -l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~ 154 (305)
T TIGR00635 76 -LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIIL 154 (305)
T ss_pred -HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEE
Confidence 22222111 0 0022344555566667777777765544433221110 0000
Q ss_pred hcCCCC---------------CCCcHHHHHHHHHHHhcCCchhHHHHHhhhcCCCHHHHHHHHHHHhhc-CC----chHH
Q 037613 287 AFKQNH---------------PDVGYEELSSKVIQHAQGVPLALKVLGCFLFGWEKKVWESAINKLKQI-LH----PKIH 346 (553)
Q Consensus 287 af~~~~---------------~~~~~~~~~~~iv~~c~glPLal~~~g~~L~~~~~~~w~~~l~~l~~~-~~----~~i~ 346 (553)
.|.... ...-..+....|++.|+|.|-.+..++..+ |..+. ..... .. ....
T Consensus 155 ~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~-~~~~~~it~~~v~~~l 226 (305)
T TIGR00635 155 RLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQ-VRGQKIINRDIALKAL 226 (305)
T ss_pred EeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHH-HcCCCCcCHHHHHHHH
Confidence 001000 001113556788888888886554444432 11100 00000 00 1122
Q ss_pred HHHHHhHhhhcHHHHHhhh-hhhcccCC-CChHHHHHHHHhcCccHHHHHH-HHhhcCceeeeCCCce
Q 037613 347 DVLKLSYDDLDVNEKGIFL-DVACFFKS-DDVYPVMKFLDASGFHLEIGIS-VLADKSLIDVNPYDRI 411 (553)
Q Consensus 347 ~~l~~Sy~~L~~~~k~~fl-~~a~fp~~-~~~~~l~~~~~~~g~~~~~~l~-~L~~~sLi~~~~~~~~ 411 (553)
..+..+|..|+...+..+. .++.+..+ ...+.+...+..+....+..++ .|++++||.....|++
T Consensus 227 ~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g~~ 294 (305)
T TIGR00635 227 EMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRGRI 294 (305)
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCchhh
Confidence 2356678889998888776 55666543 6788888888777777888888 6999999986656654
No 11
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.90 E-value=1.1e-08 Score=104.00 Aligned_cols=238 Identities=15% Similarity=0.161 Sum_probs=133.0
Q ss_pred CCCCCCccchhhhHhhHHhhccc-------cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHH
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA-------APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLAC 231 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~-------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~ 231 (553)
|....+|+|+++.++.+..++.. .+.+.++|++|+||||||+.+++.....+. ..+....... .++.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~----~~~~~~~~~~-~~l~- 94 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR----ITSGPALEKP-GDLA- 94 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE----EEecccccCh-HHHH-
Confidence 44567899999999999877753 567899999999999999999998765432 1111101111 1122
Q ss_pred HHHHHHHhhccCC-------CCc--ccHHHHHHHhcCCCeEEEEcCCCChHhHHHhhccc-------------------h
Q 037613 232 LRQKLLSNLFRDE-------SMI--PDIDLHFKRLSRRKVLVVFDDVTCFNQIESFIGSL-------------------E 283 (553)
Q Consensus 232 l~~~ll~~l~~~~-------~~~--~~~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~~~-------------------~ 283 (553)
.++..+.... ... ...+.+...+.+.+..+|+|+..+..++...++.. |
T Consensus 95 ---~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf 171 (328)
T PRK00080 95 ---AILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRF 171 (328)
T ss_pred ---HHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhc
Confidence 2222222111 000 12334445556666667777654433222111100 1
Q ss_pred hh-hhcCCC---------------CCCCcHHHHHHHHHHHhcCCchhHHHHHhhhcCCCHHHHHHHHHH--HhhcCCchH
Q 037613 284 CR-HAFKQN---------------HPDVGYEELSSKVIQHAQGVPLALKVLGCFLFGWEKKVWESAINK--LKQILHPKI 345 (553)
Q Consensus 284 ~~-~af~~~---------------~~~~~~~~~~~~iv~~c~glPLal~~~g~~L~~~~~~~w~~~l~~--l~~~~~~~i 345 (553)
.. ..|... ....-.++.+..|++.|+|.|-.+..+...+. .|...... +....-...
T Consensus 172 ~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~~~~~I~~~~v~~~ 246 (328)
T PRK00080 172 GIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVKGDGVITKEIADKA 246 (328)
T ss_pred CeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHcCCCCCCHHHHHHH
Confidence 00 000000 00011135677888999998854444443221 11110000 000001223
Q ss_pred HHHHHHhHhhhcHHHHHhhh-hhhcccCC-CChHHHHHHHHhcCccHHHHHH-HHhhcCceeeeCCCc
Q 037613 346 HDVLKLSYDDLDVNEKGIFL-DVACFFKS-DDVYPVMKFLDASGFHLEIGIS-VLADKSLIDVNPYDR 410 (553)
Q Consensus 346 ~~~l~~Sy~~L~~~~k~~fl-~~a~fp~~-~~~~~l~~~~~~~g~~~~~~l~-~L~~~sLi~~~~~~~ 410 (553)
...+...+..|++..+..+. .+..|+.+ +..+.+...+..+....+..++ .|++.+||+....|+
T Consensus 247 l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~~~gr 314 (328)
T PRK00080 247 LDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRTPRGR 314 (328)
T ss_pred HHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccCCchH
Confidence 44566778889998888886 66677654 6788888888777777787888 999999998665555
No 12
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.78 E-value=6.3e-07 Score=92.74 Aligned_cols=108 Identities=17% Similarity=0.292 Sum_probs=73.0
Q ss_pred CCCCCccchhhhHhhHHhhccc------cCEEEEeecCCCchHHHHHHHHhhhcCCCC------ceEEEEechhhhcccC
Q 037613 160 HNNDRLVGVESRVVAIESLLSA------APLLAIWGIGGIGKTTIARATFDKISSDFE------GSCFLENVREESQRLG 227 (553)
Q Consensus 160 ~~~~~~vGr~~~~~~l~~~L~~------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~------~~~~~~~~~~~s~~~~ 227 (553)
..|+.++||++++++|...|.. ...+.|+|++|+|||++++++++.+....+ ..+++. .. .. .
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in-~~---~~-~ 86 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN-CQ---IL-D 86 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE-CC---CC-C
Confidence 3456799999999999998864 468999999999999999999987643322 123333 21 11 4
Q ss_pred CHHHHHHHHHHhhcc---CCC--Cc---ccHHHHHHHhc--CCCeEEEEcCCCCh
Q 037613 228 GLACLRQKLLSNLFR---DES--MI---PDIDLHFKRLS--RRKVLVVFDDVTCF 272 (553)
Q Consensus 228 ~~~~l~~~ll~~l~~---~~~--~~---~~~~~l~~~L~--~kr~LlVLDdv~~~ 272 (553)
+...+...++.++.. ... .. +....+.+.+. +++++||||+++..
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 456777778877742 111 11 23344555553 56789999999866
No 13
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.75 E-value=5.2e-08 Score=97.47 Aligned_cols=243 Identities=18% Similarity=0.255 Sum_probs=161.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccCCCC-cccHHHHHHHhcCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRDESM-IPDIDLHFKRLSRR 260 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~-~~~~~~l~~~L~~k 260 (553)
.+.+.++|.|||||||++-.+.. +...|...+|+.+...+++ ...+...+...++-.... ......+..+..++
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD----~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~r 88 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITD----PALVFPTLAGALGLHVQPGDSAVDTLVRRIGDR 88 (414)
T ss_pred hheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCc----hhHhHHHHHhhcccccccchHHHHHHHHHHhhh
Confidence 68899999999999999999999 8889999888876666543 333333333334333222 23455777888999
Q ss_pred CeEEEEcCCCChHh-----HHHhhccc-------hhhhh----------------cC------------CC---CCCCcH
Q 037613 261 KVLVVFDDVTCFNQ-----IESFIGSL-------ECRHA----------------FK------------QN---HPDVGY 297 (553)
Q Consensus 261 r~LlVLDdv~~~~~-----l~~l~~~~-------~~~~a----------------f~------------~~---~~~~~~ 297 (553)
+.++|+||..+... ...+.... ++..+ |+ .. .-...-
T Consensus 89 r~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~ 168 (414)
T COG3903 89 RALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDN 168 (414)
T ss_pred hHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccceeecCCc
Confidence 99999999865432 22222221 11111 10 00 000112
Q ss_pred HHHHHHHHHHhcCCchhHHHHHhhhcCCCHHHHHHHHHH----Hhhc------CCchHHHHHHHhHhhhcHHHHHhhhhh
Q 037613 298 EELSSKVIQHAQGVPLALKVLGCFLFGWEKKVWESAINK----LKQI------LHPKIHDVLKLSYDDLDVNEKGIFLDV 367 (553)
Q Consensus 298 ~~~~~~iv~~c~glPLal~~~g~~L~~~~~~~w~~~l~~----l~~~------~~~~i~~~l~~Sy~~L~~~~k~~fl~~ 367 (553)
.....+|.+...|.||+|..+++..+.....+-...+.. ++.. ........+..||.-|+.-++-.|..+
T Consensus 169 ~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~~~rL 248 (414)
T COG3903 169 AAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERALFGRL 248 (414)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHHhcch
Confidence 456789999999999999999999998776654444443 2222 124578899999999999999999999
Q ss_pred hcccCCCChHHHHHHHHh-----cCccHHHHHHHHhhcCceeeeC---CCceehhHHHHHHHHHHHhhhc
Q 037613 368 ACFFKSDDVYPVMKFLDA-----SGFHLEIGISVLADKSLIDVNP---YDRITMHDLLQELGREIVRQES 429 (553)
Q Consensus 368 a~fp~~~~~~~l~~~~~~-----~g~~~~~~l~~L~~~sLi~~~~---~~~~~mHdlv~~~a~~i~~~e~ 429 (553)
+.|...|+.+........ +.+..-..+..|++++++.... .-+|+.-+-++.|+.....+..
T Consensus 249 a~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~~ 318 (414)
T COG3903 249 AVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRSG 318 (414)
T ss_pred hhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 999998877632222111 1222344677889999987654 2347888888888887765543
No 14
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.66 E-value=2.5e-07 Score=104.65 Aligned_cols=126 Identities=16% Similarity=0.219 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhcCCchhHHHHHhhhcCC-------CHHHHHHHHHHHhhcC-CchHHHHHHHhHhhhcHHHHHhhhhhhc
Q 037613 298 EELSSKVIQHAQGVPLALKVLGCFLFGW-------EKKVWESAINKLKQIL-HPKIHDVLKLSYDDLDVNEKGIFLDVAC 369 (553)
Q Consensus 298 ~~~~~~iv~~c~glPLal~~~g~~L~~~-------~~~~w~~~l~~l~~~~-~~~i~~~l~~Sy~~L~~~~k~~fl~~a~ 369 (553)
.+....|+++..|+|+-+..+-..+... +...|..-..++.... .+.+...+..-.+.||...|+.+...||
T Consensus 240 ~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~AA~ 319 (849)
T COG3899 240 APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKAAAC 319 (849)
T ss_pred chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5678899999999999999999988752 3445554444443322 1335667888999999999999999999
Q ss_pred ccCCCChHHHHHHHHhcCccH-HHHHHHHhhcCceeeeC--------CCc--e-ehhHHHHHHHHHH
Q 037613 370 FFKSDDVYPVMKFLDASGFHL-EIGISVLADKSLIDVNP--------YDR--I-TMHDLLQELGREI 424 (553)
Q Consensus 370 fp~~~~~~~l~~~~~~~g~~~-~~~l~~L~~~sLi~~~~--------~~~--~-~mHdlv~~~a~~i 424 (553)
+...|+.+.|..++....... ...++.|. .++|.+.. ... | -.||.+|+.|-..
T Consensus 320 iG~~F~l~~La~l~~~~~~~~a~~l~~al~-e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~ 385 (849)
T COG3899 320 IGNRFDLDTLAALAEDSPALEAAALLDALQ-EGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNL 385 (849)
T ss_pred hCccCCHHHHHHHHhhchHHHHHHHHHHhH-hhceeccccccccccccchhhHHhhHHHHHHHHhcc
Confidence 999999999998887544333 33344444 44444321 111 2 4688888877654
No 15
>PTZ00202 tuzin; Provisional
Probab=98.64 E-value=2.6e-07 Score=93.59 Aligned_cols=142 Identities=18% Similarity=0.211 Sum_probs=94.7
Q ss_pred HHHHHHHH-------------hhhccCCccccccCCCCchhhhHHHHHHHHHhhhcC------CCCCCCCCccchhhhHh
Q 037613 113 SWRNALKE-------------AASLSGFHSHNIRQLNLPESELTEEIVNHILKRLAE------LFPHNNDRLVGVESRVV 173 (553)
Q Consensus 113 ~w~~al~~-------------v~~~~g~~~~~~~~~~~~e~~~i~~iv~~v~~~l~~------~~~~~~~~~vGr~~~~~ 173 (553)
.||-++++ |+...||.+++++. ..-+....-.++..++..++ ..|.+.+.|+||+.++.
T Consensus 195 d~RY~l~KYsG~vSa~~a~lgv~~vF~wn~r~y~r--qQR~~Ql~~Av~tL~~~~~~~~~~~~~lPa~~~~FVGReaEla 272 (550)
T PTZ00202 195 DFRYVLTKYSGVVSASVALLGVASVFGWNFKNYRT--QQRSYQLKVAVSTLTQPLNPRPSTLQSAPAVIRQFVSREAEES 272 (550)
T ss_pred hhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHhhcccCCCcccccCCCCCccCCCCcHHHHH
Confidence 57776655 33445677776542 11233344455555555444 35777889999999999
Q ss_pred hHHhhccc-----cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccCCCCc-
Q 037613 174 AIESLLSA-----APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRDESMI- 247 (553)
Q Consensus 174 ~l~~~L~~-----~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~- 247 (553)
++...|.. .+++.|+|++|+|||||++.+..... ...++.|. .+..+++..++..++.+....
T Consensus 273 ~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNp-------rg~eElLr~LL~ALGV~p~~~k 341 (550)
T PTZ00202 273 WVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDV-------RGTEDTLRSVVKALGVPNVEAC 341 (550)
T ss_pred HHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECC-------CCHHHHHHHHHHHcCCCCcccH
Confidence 99999965 56899999999999999999997654 22555543 356889999999998652222
Q ss_pred -ccHHHHHHHh-----c-CCCeEEEEc
Q 037613 248 -PDIDLHFKRL-----S-RRKVLVVFD 267 (553)
Q Consensus 248 -~~~~~l~~~L-----~-~kr~LlVLD 267 (553)
+....|.+.+ . +++.+||+-
T Consensus 342 ~dLLrqIqeaLl~~~~e~GrtPVLII~ 368 (550)
T PTZ00202 342 GDLLDFISEACRRAKKMNGETPLLVLK 368 (550)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 3444444433 2 567777763
No 16
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.57 E-value=2.5e-06 Score=84.21 Aligned_cols=85 Identities=18% Similarity=0.156 Sum_probs=53.5
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccCCCCc---ccHHHHHHH--
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRDESMI---PDIDLHFKR-- 256 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~---~~~~~l~~~-- 256 (553)
...+.|+|++|+|||||++.+++.....=...+++.+ .. .+...++..++..++...... .....+...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~-----~~-~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVN-----TR-VDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeC-----CC-CCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 5589999999999999999999876532111223321 12 445677777777765442211 122233222
Q ss_pred ---hcCCCeEEEEcCCCCh
Q 037613 257 ---LSRRKVLVVFDDVTCF 272 (553)
Q Consensus 257 ---L~~kr~LlVLDdv~~~ 272 (553)
..+++.+||+||++..
T Consensus 117 ~~~~~~~~~vliiDe~~~l 135 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNL 135 (269)
T ss_pred HHHhCCCCeEEEEECcccC
Confidence 2578899999999764
No 17
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.50 E-value=7e-06 Score=89.04 Aligned_cols=258 Identities=14% Similarity=0.113 Sum_probs=151.2
Q ss_pred CCCCCCCccchhhhHhhHHhhccccCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHH
Q 037613 158 FPHNNDRLVGVESRVVAIESLLSAAPLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLL 237 (553)
Q Consensus 158 ~~~~~~~~vGr~~~~~~l~~~L~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll 237 (553)
+|..+.+.|-|...+..+..... .+.+.|..++|-|||||+.+.+. ....=..+.|+. ......+...+...++
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~~~~-~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wls----lde~dndp~rF~~yLi 87 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRRAND-YRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLS----LDESDNDPARFLSYLI 87 (894)
T ss_pred CCCCcccccccHHHHHHHhcCCC-ceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEee----cCCccCCHHHHHHHHH
Confidence 44556778888876666655333 78999999999999999999987 344446678886 3333367888888888
Q ss_pred HhhccCCCCc-----------------ccHHHHHHHhc--CCCeEEEEcCCCCh------HhHHHhhccc----------
Q 037613 238 SNLFRDESMI-----------------PDIDLHFKRLS--RRKVLVVFDDVTCF------NQIESFIGSL---------- 282 (553)
Q Consensus 238 ~~l~~~~~~~-----------------~~~~~l~~~L~--~kr~LlVLDdv~~~------~~l~~l~~~~---------- 282 (553)
..+....+.. .....+...+. .++..+||||-.-. .-++.++...
T Consensus 88 ~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~S 167 (894)
T COG2909 88 AALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTS 167 (894)
T ss_pred HHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEe
Confidence 8877431111 11222222222 46899999997422 1223222111
Q ss_pred ------------------------------hhhhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHHHhhhcCC-CHHHHH
Q 037613 283 ------------------------------ECRHAFKQNHPDVGYEELSSKVIQHAQGVPLALKVLGCFLFGW-EKKVWE 331 (553)
Q Consensus 283 ------------------------------~~~~af~~~~~~~~~~~~~~~iv~~c~glPLal~~~g~~L~~~-~~~~w~ 331 (553)
.+...|......+-.+..++.+.+..+|-+-|+..++=.+++. +.+.--
T Consensus 168 R~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~ 247 (894)
T COG2909 168 RSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSL 247 (894)
T ss_pred ccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHh
Confidence 1111111122122223445666666666666666666666532 221111
Q ss_pred HHHHHHhhcCCchHHH-HHHHhHhhhcHHHHHhhhhhhcccCCCChHHHHHHHHhcCccHHHHHHHHhhcCceee--eC-
Q 037613 332 SAINKLKQILHPKIHD-VLKLSYDDLDVNEKGIFLDVACFFKSDDVYPVMKFLDASGFHLEIGISVLADKSLIDV--NP- 407 (553)
Q Consensus 332 ~~l~~l~~~~~~~i~~-~l~~Sy~~L~~~~k~~fl~~a~fp~~~~~~~l~~~~~~~g~~~~~~l~~L~~~sLi~~--~~- 407 (553)
..+. .. ..-+.+ ...--++.||++.|..++-+|+++ .++-+...++. + .-.....+++|.+++|+-+ ++
T Consensus 248 ~~Ls---G~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~-~f~~eL~~~Lt-g-~~ng~amLe~L~~~gLFl~~Ldd~ 320 (894)
T COG2909 248 RGLS---GA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLS-RFNDELCNALT-G-EENGQAMLEELERRGLFLQRLDDE 320 (894)
T ss_pred hhcc---ch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH-HhhHHHHHHHh-c-CCcHHHHHHHHHhCCCceeeecCC
Confidence 1010 00 011111 233357899999999999999984 23322222222 2 1235567999999999873 22
Q ss_pred CCceehhHHHHHHHHHHHhhh
Q 037613 408 YDRITMHDLLQELGREIVRQE 428 (553)
Q Consensus 408 ~~~~~mHdlv~~~a~~i~~~e 428 (553)
++-|+.|.+..+|.+.....+
T Consensus 321 ~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 321 GQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred CceeehhHHHHHHHHhhhccc
Confidence 456999999999998776654
No 18
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.49 E-value=2.3e-07 Score=89.28 Aligned_cols=53 Identities=17% Similarity=0.401 Sum_probs=41.3
Q ss_pred ccchhhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 165 LVGVESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 165 ~vGr~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
|+||+.++++|.+.+.. .+.+.|+|+.|+|||+|++.+.+.....-...+|+.
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~ 55 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYID 55 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEe
Confidence 79999999999999877 689999999999999999999997744322344443
No 19
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.34 E-value=3.7e-07 Score=84.61 Aligned_cols=46 Identities=33% Similarity=0.529 Sum_probs=34.4
Q ss_pred CccchhhhHhhHHhhccc-----cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 164 RLVGVESRVVAIESLLSA-----APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~-----~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
.||||+++++++...|.. .+.+.|+|.+|+|||+|.+++++++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 389999999999999932 8899999999999999999999977665
No 20
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.20 E-value=1.4e-06 Score=64.92 Aligned_cols=57 Identities=19% Similarity=0.364 Sum_probs=49.5
Q ss_pred CCCcEEEeecccCCCCCCCccccCCCC-C-CCCeeEEEecCCCCCCCCCC-C-CCCCccEEEcCCCCc
Q 037613 481 HKLRFLKFYNSINGDNRCKVSYLQESP-G-FAEVRFLHRHGYPLKSLPSN-I-NQKKLVVIEMPHSNI 544 (553)
Q Consensus 481 ~~LrvL~l~~~~~~~~~~~l~~lp~~i-~-L~~Lr~L~l~~~~l~~LP~~-i-~L~~L~~L~l~~s~i 544 (553)
++|+.|++.+| .+..+|... + +.+|++|++++|.++.+|+. | ++.+|++|++++|+|
T Consensus 1 p~L~~L~l~~n-------~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNN-------KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSS-------TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCC-------CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46899999998 677799644 5 99999999999999999975 4 699999999999975
No 21
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.19 E-value=6.7e-06 Score=82.15 Aligned_cols=102 Identities=25% Similarity=0.417 Sum_probs=64.5
Q ss_pred CCCCCCccchhhhH---hhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHH
Q 037613 159 PHNNDRLVGVESRV---VAIESLLSA--APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLR 233 (553)
Q Consensus 159 ~~~~~~~vGr~~~~---~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~ 233 (553)
|..-+.+||.+..+ .-|..++.. .....+||++|+||||||+.++......|...-=+. .++..+.
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~---------~gvkdlr 90 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT---------SGVKDLR 90 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---------ccHHHHH
Confidence 33445667766555 234444444 667889999999999999999998777765322221 4444444
Q ss_pred HHHHHhhccCCCCcccHHHHHHHhcCCCeEEEEcCCC--ChHhHHHhhccc
Q 037613 234 QKLLSNLFRDESMIPDIDLHFKRLSRRKVLVVFDDVT--CFNQIESFIGSL 282 (553)
Q Consensus 234 ~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~--~~~~l~~l~~~~ 282 (553)
.-+-. .-+....+++.+|.+|.|. +..|-+.+++-.
T Consensus 91 ~i~e~-------------a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v 128 (436)
T COG2256 91 EIIEE-------------ARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV 128 (436)
T ss_pred HHHHH-------------HHHHHhcCCceEEEEehhhhcChhhhhhhhhhh
Confidence 32211 1123345899999999996 445666666543
No 22
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.19 E-value=4.1e-06 Score=72.86 Aligned_cols=86 Identities=22% Similarity=0.269 Sum_probs=59.0
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC-----CCceEEEEechhhhcccCCHHHHHHHHHHhhccCCCC-c---ccHHH
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD-----FEGSCFLENVREESQRLGGLACLRQKLLSNLFRDESM-I---PDIDL 252 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~-----F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~-~---~~~~~ 252 (553)
.+.+.|+|.+|+|||++++.+++..... -...+|+. .... .....+...++..+...... . +..+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~ 78 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSS-RTPRDFAQEILEALGLPLKSRQTSDELRSL 78 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHH-SSHHHHHHHHHHHHT-SSSSTS-HHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCC-CCHHHHHHHHHHHhCccccccCCHHHHHHH
Confidence 3678999999999999999999876542 23445665 3333 57889999999998877333 1 44566
Q ss_pred HHHHhcCCC-eEEEEcCCCCh
Q 037613 253 HFKRLSRRK-VLVVFDDVTCF 272 (553)
Q Consensus 253 l~~~L~~kr-~LlVLDdv~~~ 272 (553)
+.+.+...+ .+||+|+++..
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHH
T ss_pred HHHHHHhcCCeEEEEeChHhc
Confidence 666666555 59999999765
No 23
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.17 E-value=3e-06 Score=79.02 Aligned_cols=53 Identities=28% Similarity=0.505 Sum_probs=38.7
Q ss_pred CCCCCCccchhhhHhhHHhhccc-------cCEEEEeecCCCchHHHHHHHHhhhcCCCC
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA-------APLLAIWGIGGIGKTTIARATFDKISSDFE 211 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~-------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~ 211 (553)
|...++|||.++.++.+.-++.. ..-+.+||++|+||||||.-++++....|.
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE
Confidence 44568899999999887765543 457899999999999999999998887763
No 24
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.12 E-value=5.4e-06 Score=83.81 Aligned_cols=90 Identities=12% Similarity=0.097 Sum_probs=61.4
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcC-CCCceEEEEechhhhcccCCHHHHHHHHHHhhccCCCCc----------ccH
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISS-DFEGSCFLENVREESQRLGGLACLRQKLLSNLFRDESMI----------PDI 250 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~----------~~~ 250 (553)
....+|+|++|+||||||+.+|+.+.. +|+..+|+..+++.. ..+..+++++...+.....+. ...
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~---~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~i 245 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERP---EEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVI 245 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCch---hHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHH
Confidence 678999999999999999999997654 699999998665522 357778888764332221111 111
Q ss_pred HHHHHH-hcCCCeEEEEcCCCChHh
Q 037613 251 DLHFKR-LSRRKVLVVFDDVTCFNQ 274 (553)
Q Consensus 251 ~~l~~~-L~~kr~LlVLDdv~~~~~ 274 (553)
+.-+.. -.++.++|++|++.....
T Consensus 246 e~Ae~~~e~G~dVlL~iDsItR~ar 270 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSITRLAR 270 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChHHHHH
Confidence 111111 357999999999976554
No 25
>PF05729 NACHT: NACHT domain
Probab=98.12 E-value=6.8e-06 Score=74.44 Aligned_cols=88 Identities=20% Similarity=0.237 Sum_probs=50.1
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCCCC-----ceEEEEechhhhcccCCHHHHHHHHHHhhccCCCCcccHHHHHH-H
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSDFE-----GSCFLENVREESQRLGGLACLRQKLLSNLFRDESMIPDIDLHFK-R 256 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~F~-----~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~-~ 256 (553)
|++.|+|.+|+||||+++.+++++..... ...++...+..... .....+...+.......... ....+.. .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~--~~~~~~~~~ 77 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDS-NNSRSLADLLFDQLPESIAP--IEELLQELL 77 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhc-cccchHHHHHHHhhccchhh--hHHHHHHHH
Confidence 58999999999999999999986655432 22333334443332 21223433333333222111 1111222 2
Q ss_pred hcCCCeEEEEcCCCChH
Q 037613 257 LSRRKVLVVFDDVTCFN 273 (553)
Q Consensus 257 L~~kr~LlVLDdv~~~~ 273 (553)
...++++||+|++++..
T Consensus 78 ~~~~~~llilDglDE~~ 94 (166)
T PF05729_consen 78 EKNKRVLLILDGLDELE 94 (166)
T ss_pred HcCCceEEEEechHhcc
Confidence 25789999999998654
No 26
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.11 E-value=7.2e-06 Score=79.32 Aligned_cols=89 Identities=12% Similarity=0.084 Sum_probs=60.3
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcC-CCCceEEEEechhhhcccCCHHHHHHHHHHhhccCCCC--c--------ccH
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISS-DFEGSCFLENVREESQRLGGLACLRQKLLSNLFRDESM--I--------PDI 250 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~--~--------~~~ 250 (553)
...++|+|++|+|||||++.+++.+.. +|+..+|+..+.+. ..++.++++.+...+.....+ . ...
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er---~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER---PEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC---CccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 678999999999999999999997654 68999998854432 257888888883333222111 1 111
Q ss_pred HHHHH-HhcCCCeEEEEcCCCChH
Q 037613 251 DLHFK-RLSRRKVLVVFDDVTCFN 273 (553)
Q Consensus 251 ~~l~~-~L~~kr~LlVLDdv~~~~ 273 (553)
..... +-.++++++++|++....
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r~a 116 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITRLA 116 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHHhh
Confidence 22222 134799999999997553
No 27
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.10 E-value=1.7e-05 Score=69.84 Aligned_cols=51 Identities=31% Similarity=0.393 Sum_probs=40.3
Q ss_pred cchhhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEE
Q 037613 166 VGVESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFL 216 (553)
Q Consensus 166 vGr~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 216 (553)
+|++..+..+...+.. .+.+.|+|.+|+||||+++++++.....-...+++
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~ 53 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYL 53 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEE
Confidence 4788888888888876 78899999999999999999999765332333444
No 28
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.06 E-value=0.00016 Score=75.99 Aligned_cols=52 Identities=31% Similarity=0.544 Sum_probs=41.4
Q ss_pred CCCCCCccchhhhHhh---HHhhccc--cCEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 159 PHNNDRLVGVESRVVA---IESLLSA--APLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~---l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
|...+.+||.+..+.. +..++.. ...+.++|++|+||||||+.+++.....|
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~ 64 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAPF 64 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3445679999888766 7777766 56788999999999999999999765544
No 29
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.01 E-value=3.1e-06 Score=58.16 Aligned_cols=40 Identities=15% Similarity=0.280 Sum_probs=30.8
Q ss_pred CCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCcccCCC
Q 037613 510 AEVRFLHRHGYPLKSLPSNI-NQKKLVVIEMPHSNIQQFWD 549 (553)
Q Consensus 510 ~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~~s~i~~lp~ 549 (553)
++|++|++++++|+.+|..+ +|.+|++|++++++|+.+|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 36888888888888888877 78888888888888887653
No 30
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=2.3e-05 Score=80.14 Aligned_cols=108 Identities=19% Similarity=0.282 Sum_probs=78.5
Q ss_pred CCCCCccchhhhHhhHHhhccc------cCEEEEeecCCCchHHHHHHHHhhhcCCCCce--EEEEechhhhcccCCHHH
Q 037613 160 HNNDRLVGVESRVVAIESLLSA------APLLAIWGIGGIGKTTIARATFDKISSDFEGS--CFLENVREESQRLGGLAC 231 (553)
Q Consensus 160 ~~~~~~vGr~~~~~~l~~~L~~------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~--~~~~~~~~~s~~~~~~~~ 231 (553)
..|+.+.+|+++++++...|.. +.-+.|+|.+|.|||+.++.+.+++....... +++. ... .....+
T Consensus 14 ~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN-c~~----~~t~~~ 88 (366)
T COG1474 14 YIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN-CLE----LRTPYQ 88 (366)
T ss_pred CCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe-eee----CCCHHH
Confidence 3445599999999999988765 45599999999999999999999877764433 4443 222 267788
Q ss_pred HHHHHHHhhccCCC-Cc---ccHHHHHHHhc--CCCeEEEEcCCCCh
Q 037613 232 LRQKLLSNLFRDES-MI---PDIDLHFKRLS--RRKVLVVFDDVTCF 272 (553)
Q Consensus 232 l~~~ll~~l~~~~~-~~---~~~~~l~~~L~--~kr~LlVLDdv~~~ 272 (553)
+..+++.+++.... .. +....+.+.+. ++.+++|||+++..
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L 135 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDAL 135 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhh
Confidence 88888888864321 11 44555666654 57899999999743
No 31
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.93 E-value=9.5e-07 Score=77.78 Aligned_cols=88 Identities=13% Similarity=0.209 Sum_probs=48.2
Q ss_pred cccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCC-CCCCeeEEEecCCCCCCCCCCC-CCC
Q 037613 455 KSIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESP-GFAEVRFLHRHGYPLKSLPSNI-NQK 532 (553)
Q Consensus 455 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i-~L~~Lr~L~l~~~~l~~LP~~i-~L~ 532 (553)
.+++.+.+.+. .+.+.+.-|..++-|.||||..+++.+ ..||..+ .+..||-|.|..++++.||..+ +|.
T Consensus 79 ~klr~lnvgmn---rl~~lprgfgs~p~levldltynnl~e-----~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt 150 (264)
T KOG0617|consen 79 PKLRILNVGMN---RLNILPRGFGSFPALEVLDLTYNNLNE-----NSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLT 150 (264)
T ss_pred hhhhheecchh---hhhcCccccCCCchhhhhhcccccccc-----ccCCcchhHHHHHHHHHhcCCCcccCChhhhhhc
Confidence 34444444333 445566667788888888887665544 2345443 2455555555555555555555 455
Q ss_pred CccEEEcCCCCcccCCCC
Q 037613 533 KLVVIEMPHSNIQQFWDG 550 (553)
Q Consensus 533 ~L~~L~l~~s~i~~lp~~ 550 (553)
+||.|.++++.+-.||++
T Consensus 151 ~lqil~lrdndll~lpke 168 (264)
T KOG0617|consen 151 NLQILSLRDNDLLSLPKE 168 (264)
T ss_pred ceeEEeeccCchhhCcHH
Confidence 555555555555555544
No 32
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.84 E-value=6.9e-05 Score=82.28 Aligned_cols=108 Identities=17% Similarity=0.198 Sum_probs=69.1
Q ss_pred CCCCCccchhhhHhhHHhhccc-------cCEEEEeecCCCchHHHHHHHHhhhcC-----CCC-c-eEEEEechhhhcc
Q 037613 160 HNNDRLVGVESRVVAIESLLSA-------APLLAIWGIGGIGKTTIARATFDKISS-----DFE-G-SCFLENVREESQR 225 (553)
Q Consensus 160 ~~~~~~vGr~~~~~~l~~~L~~-------~~vi~I~G~gGiGKTtLA~~v~~~~~~-----~F~-~-~~~~~~~~~~s~~ 225 (553)
..|+.+.||++++++|...|.. ..++-|+|++|.|||+.++.|.+++.. ..+ . .+++. ... .
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN-Cm~---L 827 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN-GMN---V 827 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe-CCc---c
Confidence 4457899999999999998876 346789999999999999999986532 122 1 23332 111 1
Q ss_pred cCCHHHHHHHHHHhhccCCCC--c---ccHHHHHHHhc---CCCeEEEEcCCCCh
Q 037613 226 LGGLACLRQKLLSNLFRDESM--I---PDIDLHFKRLS---RRKVLVVFDDVTCF 272 (553)
Q Consensus 226 ~~~~~~l~~~ll~~l~~~~~~--~---~~~~~l~~~L~---~kr~LlVLDdv~~~ 272 (553)
.....+...+..++.+.... . .....+...+. ....+||||+++..
T Consensus 828 -stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L 881 (1164)
T PTZ00112 828 -VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYL 881 (1164)
T ss_pred -CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhh
Confidence 44566666677676444221 1 22333444332 22359999999754
No 33
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.81 E-value=6.4e-05 Score=76.53 Aligned_cols=90 Identities=11% Similarity=0.087 Sum_probs=62.2
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC-CCceEEEEechhhhcccCCHHHHHHHHHHhhccCCCCc------ccH----
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD-FEGSCFLENVREESQRLGGLACLRQKLLSNLFRDESMI------PDI---- 250 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~------~~~---- 250 (553)
...++|+|++|+|||||++.+++.+... |+..+|+..+++- +..+..+++.++..+.....+. ...
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER---~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDER---PEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCC---CccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 6789999999999999999999976655 9999999855332 2578888888855443331111 111
Q ss_pred HHHHH-HhcCCCeEEEEcCCCChHh
Q 037613 251 DLHFK-RLSRRKVLVVFDDVTCFNQ 274 (553)
Q Consensus 251 ~~l~~-~L~~kr~LlVLDdv~~~~~ 274 (553)
+..+. .-.+++++|++|.+.....
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~ar 269 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRLAR 269 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHHHH
Confidence 11111 2357999999999976543
No 34
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.0017 Score=70.21 Aligned_cols=49 Identities=31% Similarity=0.418 Sum_probs=42.0
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
|...+++||.+..++.|.+.+.. ...+.++|..|+||||+|+.+++.+.
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44557899999999999998877 56789999999999999999998654
No 35
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.69 E-value=0.0014 Score=71.68 Aligned_cols=49 Identities=31% Similarity=0.413 Sum_probs=41.6
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
|...+++||.+..++.|..++.. ...+.++|..|+||||+|+.+++.+.
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44557899999999999998876 56778999999999999999998653
No 36
>PF13173 AAA_14: AAA domain
Probab=97.69 E-value=0.00015 Score=62.96 Aligned_cols=78 Identities=14% Similarity=0.255 Sum_probs=47.5
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccCCCCcccHHHHHHHhcCCCe
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRDESMIPDIDLHFKRLSRRKV 262 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~ 262 (553)
+++.|.|+.|+|||||+++++++.. .-...+++. ..... . ...... +..+.+.+....++.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~~-------~-~~~~~~---------~~~~~~~~~~~~~~~ 63 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDPR-------D-RRLADP---------DLLEYFLELIKPGKK 63 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCHH-------H-HHHhhh---------hhHHHHHHhhccCCc
Confidence 6899999999999999999998765 223344443 22111 1 000000 012233333445788
Q ss_pred EEEEcCCCChHhHHHhh
Q 037613 263 LVVFDDVTCFNQIESFI 279 (553)
Q Consensus 263 LlVLDdv~~~~~l~~l~ 279 (553)
+|+||++.....|...+
T Consensus 64 ~i~iDEiq~~~~~~~~l 80 (128)
T PF13173_consen 64 YIFIDEIQYLPDWEDAL 80 (128)
T ss_pred EEEEehhhhhccHHHHH
Confidence 99999998877666554
No 37
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.66 E-value=0.00027 Score=70.37 Aligned_cols=107 Identities=22% Similarity=0.333 Sum_probs=75.4
Q ss_pred CCCccchhhhHhhHHhhccc-----cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHH
Q 037613 162 NDRLVGVESRVVAIESLLSA-----APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKL 236 (553)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~-----~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~l 236 (553)
.+.+.+|+.++..+..++.. +..|-|+|-.|.|||.+.+++++.... ..+|+..+. . +....+..+|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n~~e----c-ft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLNCVE----C-FTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeeehHH----h-ccHHHHHHHH
Confidence 46789999999999999976 556689999999999999999997632 247887332 2 7788888888
Q ss_pred HHhhccC--CCCc---------ccHHHHHH--Hhc--CCCeEEEEcCCCChHhHH
Q 037613 237 LSNLFRD--ESMI---------PDIDLHFK--RLS--RRKVLVVFDDVTCFNQIE 276 (553)
Q Consensus 237 l~~l~~~--~~~~---------~~~~~l~~--~L~--~kr~LlVLDdv~~~~~l~ 276 (553)
+.++... +... +....+.+ ..+ ++.++|||||++...+.+
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~ 131 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMD 131 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccc
Confidence 8887422 1111 12222333 222 358999999998765433
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.64 E-value=2e-05 Score=89.27 Aligned_cols=66 Identities=23% Similarity=0.304 Sum_probs=54.4
Q ss_pred CCcEEEeecccCCCCCCCccccCCC-C-CCCCeeEEEecCC-CCCCCCCCC-CCCCccEEEcCCCCcccCCCCCC
Q 037613 482 KLRFLKFYNSINGDNRCKVSYLQES-P-GFAEVRFLHRHGY-PLKSLPSNI-NQKKLVVIEMPHSNIQQFWDGTR 552 (553)
Q Consensus 482 ~LrvL~l~~~~~~~~~~~l~~lp~~-i-~L~~Lr~L~l~~~-~l~~LP~~i-~L~~L~~L~l~~s~i~~lp~~~~ 552 (553)
.|++|-+.++.. .+..+|.. + .+++||+|||++| ++.+||++| +|-||++|+|++|.|++||.|++
T Consensus 546 ~L~tLll~~n~~-----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~ 615 (889)
T KOG4658|consen 546 KLRTLLLQRNSD-----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLG 615 (889)
T ss_pred ccceEEEeecch-----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHH
Confidence 689998887631 14456643 3 3889999999987 599999999 79999999999999999999875
No 39
>PLN03150 hypothetical protein; Provisional
Probab=97.62 E-value=5.5e-05 Score=83.58 Aligned_cols=73 Identities=14% Similarity=0.266 Sum_probs=61.3
Q ss_pred cChhHhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCC-CCCCCC-CCCCccEEEcCCCCcc-cC
Q 037613 472 LNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLK-SLPSNI-NQKKLVVIEMPHSNIQ-QF 547 (553)
Q Consensus 472 ~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~-~LP~~i-~L~~L~~L~l~~s~i~-~l 547 (553)
..+..+.++++|+.|+|++|.+.+ .+|..++ |.+|++|+|++|++. .+|..+ +|.+|++|+|+++++. .+
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~g------~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~i 506 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIRG------NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCcccC------cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccC
Confidence 345568899999999999986554 4888886 999999999999977 789889 7999999999999876 66
Q ss_pred CCC
Q 037613 548 WDG 550 (553)
Q Consensus 548 p~~ 550 (553)
|..
T Consensus 507 P~~ 509 (623)
T PLN03150 507 PAA 509 (623)
T ss_pred ChH
Confidence 764
No 40
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.61 E-value=3.4e-05 Score=53.01 Aligned_cols=40 Identities=15% Similarity=0.299 Sum_probs=33.4
Q ss_pred CCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCCCC
Q 037613 481 HKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSLPS 527 (553)
Q Consensus 481 ~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~LP~ 527 (553)
++|++|+++++ .++.+|..++ |.+|++|++++|+++++|.
T Consensus 1 ~~L~~L~l~~N-------~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNN-------QITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSS-------S-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCC-------CCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 57999999999 6777998775 9999999999999998764
No 41
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.60 E-value=2.9e-05 Score=81.22 Aligned_cols=70 Identities=16% Similarity=0.270 Sum_probs=57.4
Q ss_pred ChhHhhcCCCCcEEEeecccCCCCCCCccccCCCC--CCCCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCC-----c
Q 037613 473 NPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESP--GFAEVRFLHRHGYPLKSLPSNI-NQKKLVVIEMPHSN-----I 544 (553)
Q Consensus 473 ~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i--~L~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~~s~-----i 544 (553)
-+..+...+++-||.|+++ .|+.+|.++ +|..|-||+|+.+.++.||+.+ .|.+||+|+|+++. +
T Consensus 118 vP~~LE~AKn~iVLNLS~N-------~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQL 190 (1255)
T KOG0444|consen 118 VPTNLEYAKNSIVLNLSYN-------NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQL 190 (1255)
T ss_pred cchhhhhhcCcEEEEcccC-------ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHH
Confidence 3445667777777777777 788899876 5999999999999999999999 79999999999874 5
Q ss_pred ccCCC
Q 037613 545 QQFWD 549 (553)
Q Consensus 545 ~~lp~ 549 (553)
++||.
T Consensus 191 rQLPs 195 (1255)
T KOG0444|consen 191 RQLPS 195 (1255)
T ss_pred hcCcc
Confidence 67775
No 42
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.60 E-value=1.3e-05 Score=70.70 Aligned_cols=71 Identities=20% Similarity=0.371 Sum_probs=60.6
Q ss_pred ccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCccc
Q 037613 469 EIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSLPSNI-NQKKLVVIEMPHSNIQQ 546 (553)
Q Consensus 469 ~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~~s~i~~ 546 (553)
.+..-+.....+++|.+|.++++ .++.||.+|+ |..||.|++.-+.+.-+|..| .+.-|++|||.++++.+
T Consensus 44 Kl~~vppnia~l~nlevln~~nn-------qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e 116 (264)
T KOG0617|consen 44 KLTVVPPNIAELKNLEVLNLSNN-------QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNE 116 (264)
T ss_pred ceeecCCcHHHhhhhhhhhcccc-------hhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccccccc
Confidence 34444555788999999999998 6777999996 999999999988999999999 69999999999888754
No 43
>PRK04195 replication factor C large subunit; Provisional
Probab=97.54 E-value=0.0002 Score=76.86 Aligned_cols=50 Identities=24% Similarity=0.393 Sum_probs=42.8
Q ss_pred CCCCCCCccchhhhHhhHHhhccc------cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 158 FPHNNDRLVGVESRVVAIESLLSA------APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 158 ~~~~~~~~vGr~~~~~~l~~~L~~------~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.|.....++|.+..++++..++.. .+.+.|+|++|+||||+|+++++++.
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~ 64 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG 64 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 344556799999999999998864 57899999999999999999999763
No 44
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.54 E-value=0.00025 Score=80.95 Aligned_cols=64 Identities=17% Similarity=0.236 Sum_probs=48.9
Q ss_pred hHHHHHHHHHhhhcCCCCCCCCCccchhhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 142 LTEEIVNHILKRLAELFPHNNDRLVGVESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 142 ~i~~iv~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
.+++...++..+..+. ..+.++||+.++.++.+.|.. ...+.++|.+|+|||+||+.++.++..
T Consensus 160 ~l~~~~~~l~~~~r~~---~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 160 ALKKYTIDLTERAEQG---KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred HHHHHhhhHHHHHhcC---CCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 4555555555544332 335699999999999998877 557779999999999999999997644
No 45
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=97.53 E-value=4.9e-05 Score=41.86 Aligned_cols=20 Identities=35% Similarity=0.948 Sum_probs=18.9
Q ss_pred CccEEEcCCCCcccCCCCCC
Q 037613 533 KLVVIEMPHSNIQQFWDGTR 552 (553)
Q Consensus 533 ~L~~L~l~~s~i~~lp~~~~ 552 (553)
+|+.|+|++|++++||+|+|
T Consensus 1 ~LVeL~m~~S~lekLW~G~k 20 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGVK 20 (20)
T ss_pred CcEEEECCCCChHHhcCccC
Confidence 68999999999999999986
No 46
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.0043 Score=69.38 Aligned_cols=50 Identities=24% Similarity=0.379 Sum_probs=41.7
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
|.....+||.+..++.|...+.. ...+.++|+.|+||||+|+.+++.+..
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 34457799999999999888866 556789999999999999999987643
No 47
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.52 E-value=0.00019 Score=74.33 Aligned_cols=102 Identities=16% Similarity=0.127 Sum_probs=64.6
Q ss_pred CCccchhhhHhhHHhhccccCEEEEeecCCCchHHHHHHHHhhhcC--CCCceEEEEechhhhcccCCHHHHHHHHHHhh
Q 037613 163 DRLVGVESRVVAIESLLSAAPLLAIWGIGGIGKTTIARATFDKISS--DFEGSCFLENVREESQRLGGLACLRQKLLSNL 240 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l 240 (553)
.++++.+..++.+...|...+.+.++|++|+|||++|+.+++.+.. .|....|+. ++.. .+...+.. ..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt----FHps-ySYeDFI~----G~ 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ----FHQS-YSYEDFIQ----GY 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe----eccc-ccHHHHhc----cc
Confidence 4577888889999888888888999999999999999999987643 355556665 3332 33333222 11
Q ss_pred ccCCCCc---c--cHHHHHHHhc--CCCeEEEEcCCCChH
Q 037613 241 FRDESMI---P--DIDLHFKRLS--RRKVLVVFDDVTCFN 273 (553)
Q Consensus 241 ~~~~~~~---~--~~~~l~~~L~--~kr~LlVLDdv~~~~ 273 (553)
....... . ..+.+++... +++++||+|+++...
T Consensus 246 rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 246 RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC
Confidence 1111111 1 1222233222 468999999997554
No 48
>PRK06893 DNA replication initiation factor; Validated
Probab=97.51 E-value=0.00024 Score=68.35 Aligned_cols=36 Identities=19% Similarity=0.428 Sum_probs=29.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
.+.+.+||++|+|||+|++++++....+.....|+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~ 74 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP 74 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee
Confidence 567899999999999999999998765555666665
No 49
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.50 E-value=0.00022 Score=79.28 Aligned_cols=52 Identities=27% Similarity=0.475 Sum_probs=40.1
Q ss_pred CCCCCCccchhhhHh---hHHhhccc--cCEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 159 PHNNDRLVGVESRVV---AIESLLSA--APLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~---~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
|...+.++|.+..+. .+...+.. ...+.++|++|+||||||+.+++.....|
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f 80 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHF 80 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 344567899988774 45555554 56788999999999999999999776555
No 50
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.50 E-value=0.00046 Score=77.76 Aligned_cols=65 Identities=22% Similarity=0.260 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHhhhcCCCCCCCCCccchhhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 141 ELTEEIVNHILKRLAELFPHNNDRLVGVESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 141 ~~i~~iv~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
..+++...++..+..+ ...+.++||+++++++.+.|.. ..-+.++|++|+|||++|+.+++++..
T Consensus 163 ~~l~~~~~~l~~~~r~---~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 163 DALEKYTVDLTEKAKN---GKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred hHHHHHhhhHHHHHhc---CCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3555555555554433 2335699999999999998876 556789999999999999999997643
No 51
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.49 E-value=0.00022 Score=61.78 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=21.1
Q ss_pred EEEeecCCCchHHHHHHHHhhhc
Q 037613 185 LAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
|.|+|++|+||||+|+.+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999874
No 52
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.48 E-value=0.00035 Score=66.92 Aligned_cols=55 Identities=20% Similarity=0.382 Sum_probs=39.1
Q ss_pred CCccc--hhhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 163 DRLVG--VESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 163 ~~~vG--r~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
++|++ .+..++.+.+++.. ...+.|+|++|+|||+||+.++++........+++.
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~ 73 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP 73 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe
Confidence 44552 44466777776533 678999999999999999999987654444445554
No 53
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.46 E-value=0.0022 Score=62.87 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=65.8
Q ss_pred Cccchh---hhHhhHHhhccc-----cCEEEEeecCCCchHHHHHHHHhhhcCCCCc------eEEEEechhhhcccCCH
Q 037613 164 RLVGVE---SRVVAIESLLSA-----APLLAIWGIGGIGKTTIARATFDKISSDFEG------SCFLENVREESQRLGGL 229 (553)
Q Consensus 164 ~~vGr~---~~~~~l~~~L~~-----~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~------~~~~~~~~~~s~~~~~~ 229 (553)
.+||-. ..++.+..+|.. .+-+.|+|.+|+|||++++++.+..-..++. ++.+. .... .+.
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~-p~~ 109 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPE-PDE 109 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCC-CCh
Confidence 455543 234455555554 5679999999999999999999754433321 22222 2233 788
Q ss_pred HHHHHHHHHhhccCC-CCc---ccHHHHHHHhcC-CCeEEEEcCCCC
Q 037613 230 ACLRQKLLSNLFRDE-SMI---PDIDLHFKRLSR-RKVLVVFDDVTC 271 (553)
Q Consensus 230 ~~l~~~ll~~l~~~~-~~~---~~~~~l~~~L~~-kr~LlVLDdv~~ 271 (553)
..+...|+..++.+- ... .......+.++. +--+||+|.+.+
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 999999999998872 222 223333445554 445899999865
No 54
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.00066 Score=72.63 Aligned_cols=49 Identities=29% Similarity=0.306 Sum_probs=40.8
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
|...+.++|.+..++.|...+.. ...+.++|++|+||||+|+.+++.+.
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34456789999988888888876 55679999999999999999998764
No 55
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.43 E-value=0.0002 Score=70.64 Aligned_cols=104 Identities=25% Similarity=0.415 Sum_probs=60.5
Q ss_pred CCCCCCccchhhhHhh---HHhhccc--cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHH
Q 037613 159 PHNNDRLVGVESRVVA---IESLLSA--APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLR 233 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~---l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~ 233 (553)
|..-++.||.+..+.+ |.+++.. .+.+.+||++|+||||||+.++..-+.+- ..|+. ++.......++..+.
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve-lSAt~a~t~dvR~if 210 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE-LSATNAKTNDVRDIF 210 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE-EeccccchHHHHHHH
Confidence 4444567777766543 3334433 77889999999999999999998554432 34444 221111112233222
Q ss_pred HHHHHhhccCCCCcccHHHHHHHhcCCCeEEEEcCCCC--hHhHHHhhc
Q 037613 234 QKLLSNLFRDESMIPDIDLHFKRLSRRKVLVVFDDVTC--FNQIESFIG 280 (553)
Q Consensus 234 ~~ll~~l~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~--~~~l~~l~~ 280 (553)
++-- -...+..+|.+|.+|.|.. ..|-+.+++
T Consensus 211 e~aq---------------~~~~l~krkTilFiDEiHRFNksQQD~fLP 244 (554)
T KOG2028|consen 211 EQAQ---------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLP 244 (554)
T ss_pred HHHH---------------HHHhhhcceeEEEeHHhhhhhhhhhhcccc
Confidence 2211 1124567889999999953 345555544
No 56
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.43 E-value=0.0085 Score=64.76 Aligned_cols=49 Identities=29% Similarity=0.373 Sum_probs=41.8
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
|.....++|.+..++.+...+.. .+.+.++|+.|+||||+|+.+++.+.
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 44557899999999999998855 66789999999999999999998653
No 57
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.43 E-value=0.00037 Score=67.89 Aligned_cols=89 Identities=16% Similarity=0.185 Sum_probs=59.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhcc--------CCCCc------
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFR--------DESMI------ 247 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~--------~~~~~------ 247 (553)
-..++|.|..|+||||||+.++++++.+|+..+++..+++-. ..+..+.+.+...-.. ...+.
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~---~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERT---REGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCc---HHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 578999999999999999999999988888888777665432 3355565555542111 01110
Q ss_pred --ccHHHHHHHh---cCCCeEEEEcCCCChH
Q 037613 248 --PDIDLHFKRL---SRRKVLVVFDDVTCFN 273 (553)
Q Consensus 248 --~~~~~l~~~L---~~kr~LlVLDdv~~~~ 273 (553)
...-.+.+++ .++.+|+++||+....
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a 176 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFRFT 176 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhHHH
Confidence 1122344555 3889999999997654
No 58
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.42 E-value=0.00032 Score=72.43 Aligned_cols=51 Identities=22% Similarity=0.384 Sum_probs=41.0
Q ss_pred CCCCCccchhhhHhhHHhhccc---------------cCEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 160 HNNDRLVGVESRVVAIESLLSA---------------APLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 160 ~~~~~~vGr~~~~~~l~~~L~~---------------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
.....+.|+++.+++|.+.+.. .+-+.++|++|+|||++|++++++....|
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~ 184 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF 184 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCE
Confidence 3445789999999998886632 34589999999999999999999876554
No 59
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.41 E-value=0.0079 Score=65.28 Aligned_cols=49 Identities=35% Similarity=0.413 Sum_probs=42.0
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
|.....+||.+...+.|..++.. ...+.++|+.|+||||+|+.+++.+.
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34557899999999999998876 56789999999999999999998653
No 60
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.41 E-value=0.00042 Score=79.11 Aligned_cols=64 Identities=25% Similarity=0.312 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHhhhcCCCCCCCCCccchhhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 141 ELTEEIVNHILKRLAELFPHNNDRLVGVESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 141 ~~i~~iv~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+++...++....... ..+.++||+++++++.+.|.. ..-+.++|++|+|||++|+.++.++.
T Consensus 160 ~~l~~~~~~l~~~a~~~---~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 160 PTLEEFGTNLTKEAIDG---NLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred hHHHHHHHHHHHHHHcC---CCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 35566666655543222 224589999999999999977 55678999999999999999998764
No 61
>PF14516 AAA_35: AAA-like domain
Probab=97.39 E-value=0.019 Score=58.39 Aligned_cols=113 Identities=9% Similarity=0.193 Sum_probs=71.6
Q ss_pred CCCCCCCccchhhhHhhHHhhccc-cCEEEEeecCCCchHHHHHHHHhhhcC-CCCceEEEEechhhhc-ccCCHHHHHH
Q 037613 158 FPHNNDRLVGVESRVVAIESLLSA-APLLAIWGIGGIGKTTIARATFDKISS-DFEGSCFLENVREESQ-RLGGLACLRQ 234 (553)
Q Consensus 158 ~~~~~~~~vGr~~~~~~l~~~L~~-~~vi~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~s~-~~~~~~~l~~ 234 (553)
.|.+.+..|.|...-+++.+.+.. ...+.|.|+-.+|||+|...+.+.... .|.+ +++ ++..... ...+...+.+
T Consensus 6 ~~~~~~~Yi~R~~~e~~~~~~i~~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~-v~i-d~~~~~~~~~~~~~~f~~ 83 (331)
T PF14516_consen 6 LPLDSPFYIERPPAEQECYQEIVQPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRC-VYI-DLQQLGSAIFSDLEQFLR 83 (331)
T ss_pred CCCCCCcccCchHHHHHHHHHHhcCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEE-EEE-EeecCCCcccCCHHHHHH
Confidence 455667789999667777776666 889999999999999999999987654 3433 333 3443322 2245565555
Q ss_pred HHHHhhccC-C--CC------------cccHHHHHHHh---cCCCeEEEEcCCCCh
Q 037613 235 KLLSNLFRD-E--SM------------IPDIDLHFKRL---SRRKVLVVFDDVTCF 272 (553)
Q Consensus 235 ~ll~~l~~~-~--~~------------~~~~~~l~~~L---~~kr~LlVLDdv~~~ 272 (553)
.+...+... . .. ......+.+.+ .+++.+|++|+|+..
T Consensus 84 ~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l 139 (331)
T PF14516_consen 84 WFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRL 139 (331)
T ss_pred HHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhh
Confidence 555544433 1 10 02223344432 268999999999743
No 62
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.39 E-value=0.00082 Score=76.54 Aligned_cols=65 Identities=15% Similarity=0.251 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHhhhcCCCCCCCCCccchhhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 141 ELTEEIVNHILKRLAELFPHNNDRLVGVESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 141 ~~i~~iv~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
..+++...++..+..+ ...+.++||+.++.++...|.. ..-+.++|.+|+||||+|+.+++++..
T Consensus 168 ~~l~~~~~~L~~~~r~---~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~ 234 (852)
T TIGR03345 168 SALDQYTTDLTAQARE---GKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAA 234 (852)
T ss_pred hhHHHHhhhHHHHhcC---CCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhh
Confidence 3455555555544333 3346799999999999998876 556779999999999999999997643
No 63
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.38 E-value=0.009 Score=64.16 Aligned_cols=48 Identities=27% Similarity=0.365 Sum_probs=41.5
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
|.....+||-+..++.|...+.. ...+.++|+.|+||||+|+.+++.+
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 44557899999999999999976 5678999999999999999999855
No 64
>PLN03025 replication factor C subunit; Provisional
Probab=97.37 E-value=0.0004 Score=70.39 Aligned_cols=50 Identities=30% Similarity=0.354 Sum_probs=40.8
Q ss_pred CCCCCCCccchhhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 158 FPHNNDRLVGVESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 158 ~~~~~~~~vGr~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.|.....++|.++.++.|..++.. .+-+.++|++|+||||+|..+++.+.
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 344556789999888888887766 45678999999999999999999763
No 65
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.37 E-value=0.0067 Score=62.30 Aligned_cols=49 Identities=24% Similarity=0.270 Sum_probs=42.4
Q ss_pred CCCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 158 FPHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 158 ~~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.|.....++|.+...+.+.+.+.. ...+.++|+.|+||||+|..+++.+
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 455667899999999999998876 6679999999999999999999854
No 66
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.36 E-value=0.00011 Score=67.08 Aligned_cols=63 Identities=16% Similarity=0.253 Sum_probs=19.7
Q ss_pred hhcCCCCcEEEeecccCCCCCCCccccCCCC-C-CCCeeEEEecCCCCCCCCCC--C-CCCCccEEEcCCCCccc
Q 037613 477 FVKMHKLRFLKFYNSINGDNRCKVSYLQESP-G-FAEVRFLHRHGYPLKSLPSN--I-NQKKLVVIEMPHSNIQQ 546 (553)
Q Consensus 477 ~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i-~-L~~Lr~L~l~~~~l~~LP~~--i-~L~~L~~L~l~~s~i~~ 546 (553)
+..++.|++|+++++ .+..+++.+ . +++|+.|+++++.|.++-.- + ++++|++|+|.++.+.+
T Consensus 60 l~~L~~L~~L~L~~N-------~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 60 LPGLPRLKTLDLSNN-------RISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp ----TT--EEE--SS----------S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred ccChhhhhhcccCCC-------CCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 445556666666655 333343322 2 45666666666655555432 1 35566666666555543
No 67
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.35 E-value=0.0097 Score=64.98 Aligned_cols=48 Identities=29% Similarity=0.433 Sum_probs=40.6
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
|...+++||-+..++.|..++.. ...+.++|+.|+||||+|+.+++.+
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34457799999988999998876 5677999999999999999998754
No 68
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.34 E-value=0.00038 Score=72.40 Aligned_cols=49 Identities=18% Similarity=0.357 Sum_probs=39.9
Q ss_pred CCCCccchhhhHhhHHhhccc---------------cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 161 NNDRLVGVESRVVAIESLLSA---------------APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~---------------~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
..+.+.|+++.++++.+.+.. ++-|.++|++|+|||++|++++++....
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~ 192 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT 192 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC
Confidence 345688999999999886532 4568999999999999999999976543
No 69
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.33 E-value=0.002 Score=66.52 Aligned_cols=49 Identities=33% Similarity=0.405 Sum_probs=41.3
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
|.....++|.+..++.+...+.. ...+.++|+.|+||||+|+.+++.+.
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 34457799999999999888866 55689999999999999999998654
No 70
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.32 E-value=0.0099 Score=65.05 Aligned_cols=48 Identities=35% Similarity=0.461 Sum_probs=41.5
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
|.....+||.+..++.|..++.. ...+.++|+.|+||||+|+.+++.+
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 44557899999999999998876 5678999999999999999998864
No 71
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.31 E-value=0.00071 Score=77.50 Aligned_cols=64 Identities=22% Similarity=0.302 Sum_probs=48.2
Q ss_pred hHHHHHHHHHhhhcCCCCCCCCCccchhhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 142 LTEEIVNHILKRLAELFPHNNDRLVGVESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 142 ~i~~iv~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
.+++...++.....+ ...+.++||+.++.++...|.. ...+.++|++|+|||++|..+++++..
T Consensus 155 ~l~~~~~~l~~~~~~---~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 155 ALEKYARDLTERARE---GKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred HHHHHhhhHHHHhhC---CCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 455544454444333 2335699999999999998876 556778999999999999999997654
No 72
>PRK08116 hypothetical protein; Validated
Probab=97.31 E-value=0.00084 Score=66.00 Aligned_cols=74 Identities=22% Similarity=0.302 Sum_probs=44.6
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccCCCCcccHHHHHHHhcCCCe
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRDESMIPDIDLHFKRLSRRKV 262 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~ 262 (553)
.-+.++|..|+|||.||.++++.+..+-..++++. ...+...+........ ......+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-----------~~~ll~~i~~~~~~~~--~~~~~~~~~~l~~~d- 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-----------FPQLLNRIKSTYKSSG--KEDENEIIRSLVNAD- 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhccc--cccHHHHHHHhcCCC-
Confidence 45889999999999999999998765533344443 2223334433322211 112223444455444
Q ss_pred EEEEcCCC
Q 037613 263 LVVFDDVT 270 (553)
Q Consensus 263 LlVLDdv~ 270 (553)
||||||+.
T Consensus 181 lLviDDlg 188 (268)
T PRK08116 181 LLILDDLG 188 (268)
T ss_pred EEEEeccc
Confidence 89999994
No 73
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.31 E-value=0.00078 Score=58.45 Aligned_cols=34 Identities=32% Similarity=0.444 Sum_probs=27.0
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCCCCceEEE
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSDFEGSCFL 216 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 216 (553)
..+.|+|++|+||||+|+.++..........+++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 5789999999999999999999776655333444
No 74
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.31 E-value=0.00067 Score=69.29 Aligned_cols=51 Identities=25% Similarity=0.375 Sum_probs=42.5
Q ss_pred CCCCCCccchhhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
|...+.++|++..++.+..++.. .+.+.++|+.|+||||+|+.+++.+...
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~ 63 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGD 63 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 34456799999999999998877 4478899999999999999999876543
No 75
>PRK12377 putative replication protein; Provisional
Probab=97.28 E-value=0.0044 Score=59.99 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=29.2
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
...+.++|.+|+|||+||.++++.+......+.++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 457899999999999999999998766544456554
No 76
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.28 E-value=0.0042 Score=66.81 Aligned_cols=49 Identities=20% Similarity=0.321 Sum_probs=40.8
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
|.....++|.+..++.+...+.. ...+.++|+.|+||||+|+.+++.+.
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34456799999999999988876 45678999999999999999998654
No 77
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.26 E-value=0.00044 Score=73.49 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=39.9
Q ss_pred CCCCCccchhhhHhhHHhhccc---------------cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 160 HNNDRLVGVESRVVAIESLLSA---------------APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 160 ~~~~~~vGr~~~~~~l~~~L~~---------------~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
.....+.|.+..++++...+.. .+-+.++|++|+|||++|+++++.+...
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 3345678899999888876532 4568999999999999999999987654
No 78
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.25 E-value=0.0078 Score=63.84 Aligned_cols=48 Identities=27% Similarity=0.359 Sum_probs=40.4
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
|.....+||.+..++.+...+.. ...+.++|+.|+||||+|+.+++.+
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHH
Confidence 44557899999999988887765 5688999999999999999998754
No 79
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.25 E-value=5.3e-05 Score=79.33 Aligned_cols=71 Identities=15% Similarity=0.216 Sum_probs=53.6
Q ss_pred ChhHhhcCCCCcEEEeecccCCCCCCCccccCCCC-CCCCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCcccCCCC
Q 037613 473 NPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESP-GFAEVRFLHRHGYPLKSLPSNI-NQKKLVVIEMPHSNIQQFWDG 550 (553)
Q Consensus 473 ~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i-~L~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~~s~i~~lp~~ 550 (553)
.+..+..|.||+-+||+.+.++. +|+.+ +|.+||-|+|+++.|++|.-.+ .-.+|++|+|+++++..||..
T Consensus 214 ~Ptsld~l~NL~dvDlS~N~Lp~-------vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~a 286 (1255)
T KOG0444|consen 214 IPTSLDDLHNLRDVDLSENNLPI-------VPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDA 286 (1255)
T ss_pred CCCchhhhhhhhhccccccCCCc-------chHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHH
Confidence 34556777888888888774444 77777 5888888888888888887777 577888888888888888764
No 80
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.23 E-value=0.0053 Score=64.90 Aligned_cols=73 Identities=15% Similarity=0.250 Sum_probs=45.3
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCCCC-ce-EEEEechhhhcccCCHHHHHHHHHHhhccCCCCcccHHHHHHHhcCC
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSDFE-GS-CFLENVREESQRLGGLACLRQKLLSNLFRDESMIPDIDLHFKRLSRR 260 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~F~-~~-~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~k 260 (553)
.-+.|+|.+|+|||+|++++++.+....+ .. .|+. . ..+...+...+... ......+..+..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-~----------~~f~~~~~~~~~~~-----~~~~f~~~~~~~ 194 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-S----------EKFLNDLVDSMKEG-----KLNEFREKYRKK 194 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-H----------HHHHHHHHHHHhcc-----cHHHHHHHHHhc
Confidence 35899999999999999999998766543 23 3333 1 22333444333221 122334444445
Q ss_pred CeEEEEcCCCC
Q 037613 261 KVLVVFDDVTC 271 (553)
Q Consensus 261 r~LlVLDdv~~ 271 (553)
.-+|++||+..
T Consensus 195 ~dvLlIDDi~~ 205 (440)
T PRK14088 195 VDVLLIDDVQF 205 (440)
T ss_pred CCEEEEechhh
Confidence 66899999974
No 81
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.22 E-value=0.00022 Score=52.90 Aligned_cols=42 Identities=14% Similarity=0.298 Sum_probs=37.7
Q ss_pred CCeeEEEecCCCCCCCCCC-C-CCCCccEEEcCCCCcccCCCCC
Q 037613 510 AEVRFLHRHGYPLKSLPSN-I-NQKKLVVIEMPHSNIQQFWDGT 551 (553)
Q Consensus 510 ~~Lr~L~l~~~~l~~LP~~-i-~L~~L~~L~l~~s~i~~lp~~~ 551 (553)
++|++|++++|.++.+|.. | ++.+|++|+|++++|+.+|.+.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~ 44 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDA 44 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTT
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHH
Confidence 3899999999999999975 5 6999999999999999998754
No 82
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.22 E-value=0.0031 Score=66.20 Aligned_cols=50 Identities=24% Similarity=0.393 Sum_probs=41.7
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
|.....+||.+..+..|..++.. ...+.++|+.|+||||+|+.+++.+..
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 44557799999999999988877 345799999999999999999986543
No 83
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.16 E-value=0.0012 Score=69.98 Aligned_cols=49 Identities=27% Similarity=0.319 Sum_probs=40.1
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
|...+.+||.+...+.+...+.. ...+.++|++|+||||+|+.+++.+.
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34457799999888888887766 45688999999999999999998643
No 84
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.15 E-value=0.00038 Score=81.61 Aligned_cols=71 Identities=15% Similarity=0.260 Sum_probs=42.3
Q ss_pred ChhHhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCC-CCCCCC-CCCCccEEEcCCCCcc-cCC
Q 037613 473 NPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLK-SLPSNI-NQKKLVVIEMPHSNIQ-QFW 548 (553)
Q Consensus 473 ~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~-~LP~~i-~L~~L~~L~l~~s~i~-~lp 548 (553)
.+..|.++++|++|+|++|.+.+ .+|..++ +.+|++|++++|++. .+|..+ ++.+|++|+|++|++. .+|
T Consensus 180 ~p~~~~~l~~L~~L~L~~n~l~~------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 253 (968)
T PLN00113 180 IPNSLTNLTSLEFLTLASNQLVG------QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP 253 (968)
T ss_pred CChhhhhCcCCCeeeccCCCCcC------cCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccC
Confidence 34445566666666666554322 3555554 667777777666654 566666 5777777777766654 344
Q ss_pred C
Q 037613 549 D 549 (553)
Q Consensus 549 ~ 549 (553)
.
T Consensus 254 ~ 254 (968)
T PLN00113 254 S 254 (968)
T ss_pred h
Confidence 4
No 85
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.15 E-value=0.0014 Score=62.30 Aligned_cols=53 Identities=25% Similarity=0.448 Sum_probs=41.8
Q ss_pred CCCCCCCCccchhhhHhhHHhhcc----c--cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 157 LFPHNNDRLVGVESRVVAIESLLS----A--APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 157 ~~~~~~~~~vGr~~~~~~l~~~L~----~--~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
..+...+.++|.+.+.+.|.+-.. . ..-+.+||..|.|||++++++.++....
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 344556789999999988876433 3 6678889999999999999999876553
No 86
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.15 E-value=0.00081 Score=78.91 Aligned_cols=71 Identities=15% Similarity=0.256 Sum_probs=42.3
Q ss_pred ChhHhhcCCCCcEEEeecccCCCCCCCccccCCCCCCCCeeEEEecCCCCC-CCCCCC-CCCCccEEEcCCCCcc-cCCC
Q 037613 473 NPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPGFAEVRFLHRHGYPLK-SLPSNI-NQKKLVVIEMPHSNIQ-QFWD 549 (553)
Q Consensus 473 ~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~L~~Lr~L~l~~~~l~-~LP~~i-~L~~L~~L~l~~s~i~-~lp~ 549 (553)
+...|..+++||+|+|+++.+.+ .+|. -.+.+|++|++++|.+. .+|..+ ++.+|++|+|++|.+. .+|.
T Consensus 110 p~~~~~~l~~L~~L~Ls~n~l~~------~~p~-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 182 (968)
T PLN00113 110 PDDIFTTSSSLRYLNLSNNNFTG------SIPR-GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182 (968)
T ss_pred ChHHhccCCCCCEEECcCCcccc------ccCc-cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh
Confidence 33444455555555555443222 1221 12567777777777654 678778 6888888888888764 5665
Q ss_pred C
Q 037613 550 G 550 (553)
Q Consensus 550 ~ 550 (553)
.
T Consensus 183 ~ 183 (968)
T PLN00113 183 S 183 (968)
T ss_pred h
Confidence 4
No 87
>PRK08118 topology modulation protein; Reviewed
Probab=97.14 E-value=0.00036 Score=63.46 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=27.1
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcC---CCCceEEE
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISS---DFEGSCFL 216 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~---~F~~~~~~ 216 (553)
+.|.|+|++|+||||||+.+++...- +|+...|-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 46899999999999999999997543 36666654
No 88
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.12 E-value=0.0021 Score=65.25 Aligned_cols=97 Identities=14% Similarity=0.175 Sum_probs=61.9
Q ss_pred hHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhcCCC-CceEEEEechhhhcccCCHHHHHHHHHHhhccCCC--Cc
Q 037613 174 AIESLLSA---APLLAIWGIGGIGKTTIARATFDKISSDF-EGSCFLENVREESQRLGGLACLRQKLLSNLFRDES--MI 247 (553)
Q Consensus 174 ~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~--~~ 247 (553)
++.+.+.. ...++|+|..|+|||||++.+++.+..+. +..+++.-+. +....+..+.+.+...+..... ..
T Consensus 122 RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIg---ER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 122 RVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLID---ERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEec---CCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 35555554 56789999999999999999999876654 3333333233 3335677888888776654321 11
Q ss_pred ----c---cHHHHHHHh--cCCCeEEEEcCCCChH
Q 037613 248 ----P---DIDLHFKRL--SRRKVLVVFDDVTCFN 273 (553)
Q Consensus 248 ----~---~~~~l~~~L--~~kr~LlVLDdv~~~~ 273 (553)
. ....+.+++ .+++++||+|++....
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~A 233 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTRLA 233 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHHH
Confidence 1 111222222 4799999999997554
No 89
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.002 Score=62.82 Aligned_cols=80 Identities=21% Similarity=0.258 Sum_probs=49.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhh----hcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccCCCCcccHHHHHHHh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDK----ISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRDESMIPDIDLHFKRL 257 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~----~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L 257 (553)
.|+|.++|++|.|||+|+++++++ ..+.|..+..+. . +...+..+..+.-++- -....+.+++.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE----i-----nshsLFSKWFsESgKl--V~kmF~kI~ELv 245 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE----I-----NSHSLFSKWFSESGKL--VAKMFQKIQELV 245 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE----E-----ehhHHHHHHHhhhhhH--HHHHHHHHHHHH
Confidence 689999999999999999999995 345566666665 2 2222333333222111 013445566666
Q ss_pred cCCC--eEEEEcCCCCh
Q 037613 258 SRRK--VLVVFDDVTCF 272 (553)
Q Consensus 258 ~~kr--~LlVLDdv~~~ 272 (553)
.++. +++.+|.|.+.
T Consensus 246 ~d~~~lVfvLIDEVESL 262 (423)
T KOG0744|consen 246 EDRGNLVFVLIDEVESL 262 (423)
T ss_pred hCCCcEEEEEeHHHHHH
Confidence 6655 56678888543
No 90
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.09 E-value=0.00043 Score=59.19 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=21.5
Q ss_pred EEEEeecCCCchHHHHHHHHhhh
Q 037613 184 LLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
+|+|.|++|+||||+|+.++++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999975
No 91
>PRK08727 hypothetical protein; Validated
Probab=97.08 E-value=0.0021 Score=61.97 Aligned_cols=56 Identities=21% Similarity=0.280 Sum_probs=36.7
Q ss_pred CCCccchh-hhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 162 NDRLVGVE-SRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 162 ~~~~vGr~-~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
.++|++.. ..+..+...... ...+.|+|..|+|||+|++++++..........|+.
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 34455443 333433333322 456999999999999999999987665544555654
No 92
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.07 E-value=0.0014 Score=67.98 Aligned_cols=51 Identities=20% Similarity=0.323 Sum_probs=40.2
Q ss_pred CCCCCccchhhhHhhHHhhccc---------------cCEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 160 HNNDRLVGVESRVVAIESLLSA---------------APLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 160 ~~~~~~vGr~~~~~~l~~~L~~---------------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
....++.|.+...++|.+.+.. .+-+.++|++|+|||+||+++++.....|
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f 207 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF 207 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 3445688999888888776532 56799999999999999999999765443
No 93
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.07 E-value=0.022 Score=58.63 Aligned_cols=49 Identities=27% Similarity=0.392 Sum_probs=41.0
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
|.....++|.+..++.+.+.+.. ...+.++|+.|+||||+|+.+++.+.
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34456789999999999998866 55788999999999999999998653
No 94
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.07 E-value=0.0017 Score=65.65 Aligned_cols=50 Identities=34% Similarity=0.410 Sum_probs=42.0
Q ss_pred CCCCCCccchhhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
|.....++|+++.++.+..++.. .+.+.++|..|+||||+|+.+++.+..
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~ 64 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYG 64 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34456789999999999998876 556899999999999999999987643
No 95
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.05 E-value=0.013 Score=59.20 Aligned_cols=44 Identities=27% Similarity=0.329 Sum_probs=38.1
Q ss_pred CCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 163 DRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..++|.+..++.+...+.. .....++|+.|+||||+|+.+++.+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l 50 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKI 50 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHH
Confidence 4578988888889888866 6788999999999999999999864
No 96
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.03 E-value=0.00059 Score=59.91 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=28.5
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCC-CCceEEE
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSD-FEGSCFL 216 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~ 216 (553)
.-|+|.||+|+||||+++.+++.++.. |...-|+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~ 40 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFI 40 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEE
Confidence 358999999999999999999987776 7765444
No 97
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.00 E-value=0.0011 Score=63.25 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=30.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
.-.++|.|..|+|||||...+.......|....+++
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 447899999999999999999998888997666665
No 98
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.00 E-value=0.0012 Score=69.20 Aligned_cols=49 Identities=24% Similarity=0.420 Sum_probs=40.1
Q ss_pred CCCccchhhhHhhHHhhccc---------------cCEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 162 NDRLVGVESRVVAIESLLSA---------------APLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~---------------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
..++.|.+..+++|.+.+.. .+-+.++|++|+|||++|++++++....|
T Consensus 182 ~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~f 245 (438)
T PTZ00361 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATF 245 (438)
T ss_pred HHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence 35678999999988886642 45788999999999999999999876554
No 99
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.00 E-value=0.0015 Score=62.29 Aligned_cols=74 Identities=20% Similarity=0.325 Sum_probs=45.5
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCCCCc-eEEEEechhhhcccCCHHHHHHHHHHhhccCCCCcccHHHHHHHhcCCC
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSDFEG-SCFLENVREESQRLGGLACLRQKLLSNLFRDESMIPDIDLHFKRLSRRK 261 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~-~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr 261 (553)
..+-|+|..|+|||.|.+++++.+....+. .+.+.+ ...+...+...+.. .....+++.++ .-
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~----------~~~f~~~~~~~~~~-----~~~~~~~~~~~-~~ 98 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS----------AEEFIREFADALRD-----GEIEEFKDRLR-SA 98 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE----------HHHHHHHHHHHHHT-----TSHHHHHHHHC-TS
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeec----------HHHHHHHHHHHHHc-----ccchhhhhhhh-cC
Confidence 468899999999999999999987655443 332321 22333344433322 22344555555 34
Q ss_pred eEEEEcCCCCh
Q 037613 262 VLVVFDDVTCF 272 (553)
Q Consensus 262 ~LlVLDdv~~~ 272 (553)
=+|++||++..
T Consensus 99 DlL~iDDi~~l 109 (219)
T PF00308_consen 99 DLLIIDDIQFL 109 (219)
T ss_dssp SEEEEETGGGG
T ss_pred CEEEEecchhh
Confidence 47888999654
No 100
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.99 E-value=0.0027 Score=61.31 Aligned_cols=46 Identities=15% Similarity=0.378 Sum_probs=31.9
Q ss_pred HhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 172 VVAIESLLSA--APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 172 ~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
+..+.++... .+.+.|+|+.|+|||+|++++++.....-..+.++.
T Consensus 33 ~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~ 80 (235)
T PRK08084 33 LAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP 80 (235)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3444444333 578999999999999999999987665433344544
No 101
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.98 E-value=0.027 Score=54.42 Aligned_cols=74 Identities=18% Similarity=0.223 Sum_probs=44.1
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccCCCCcccHHHHHHHhcCCCe
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRDESMIPDIDLHFKRLSRRKV 262 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~ 262 (553)
..+.++|.+|+|||+||.++++.+...-..++++. ...+...+-......+ .....+.+.+. +.=
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it-----------~~~l~~~l~~~~~~~~---~~~~~~l~~l~-~~d 164 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT-----------VADIMSAMKDTFSNSE---TSEEQLLNDLS-NVD 164 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE-----------HHHHHHHHHHHHhhcc---ccHHHHHHHhc-cCC
Confidence 47899999999999999999997765544445553 1223333322221111 11223444455 455
Q ss_pred EEEEcCCCC
Q 037613 263 LVVFDDVTC 271 (553)
Q Consensus 263 LlVLDdv~~ 271 (553)
+||+||+..
T Consensus 165 lLvIDDig~ 173 (244)
T PRK07952 165 LLVIDEIGV 173 (244)
T ss_pred EEEEeCCCC
Confidence 888999954
No 102
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.96 E-value=0.0011 Score=78.92 Aligned_cols=67 Identities=22% Similarity=0.277 Sum_probs=43.2
Q ss_pred hhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCC-CCCCCCCCCCCCCccEEEcCCC-CcccCCC
Q 037613 477 FVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGY-PLKSLPSNINQKKLVVIEMPHS-NIQQFWD 549 (553)
Q Consensus 477 ~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~-~l~~LP~~i~L~~L~~L~l~~s-~i~~lp~ 549 (553)
+..+++|+.|+|.+|. .+..+|.+++ |.+|++|++++| .++.+|..+++.+|++|+|++| .++.+|.
T Consensus 653 ls~l~~Le~L~L~~c~------~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~ 722 (1153)
T PLN03210 653 LSMATNLETLKLSDCS------SLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPD 722 (1153)
T ss_pred cccCCcccEEEecCCC------CccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccc
Confidence 4555666666666553 4555676665 777777777776 3777777667777777777765 3555553
No 103
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.96 E-value=0.004 Score=66.47 Aligned_cols=50 Identities=32% Similarity=0.330 Sum_probs=41.5
Q ss_pred CCCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 158 FPHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 158 ~~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.|.....++|.+..++.+...+.. ...+.++|+.|+||||+|+.+++.+.
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 345557799999999998887665 56789999999999999999998653
No 104
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.96 E-value=0.0067 Score=56.55 Aligned_cols=50 Identities=28% Similarity=0.315 Sum_probs=41.0
Q ss_pred CCCCCCccchhhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
|..-.+.||-++.++.+.-.-.. .+-+.|.||+|+||||-+..+++++-.
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 34446789999999888776655 888999999999999999999987543
No 105
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.95 E-value=0.00038 Score=69.57 Aligned_cols=75 Identities=13% Similarity=0.141 Sum_probs=52.7
Q ss_pred hhHhhcCCCCcEEEeecccCCCC----------------CCCccccCCC-CC-CCCeeEEEecCCCCCCCCCCC-CCCCc
Q 037613 474 PNTFVKMHKLRFLKFYNSINGDN----------------RCKVSYLQES-PG-FAEVRFLHRHGYPLKSLPSNI-NQKKL 534 (553)
Q Consensus 474 ~~~~~~~~~LrvL~l~~~~~~~~----------------~~~l~~lp~~-i~-L~~Lr~L~l~~~~l~~LP~~i-~L~~L 534 (553)
+..+..+..||.|+++.+.|..- .-.+..+|.+ ++ +.+|..|+|+++++..+|+.+ ++.||
T Consensus 451 P~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL 530 (565)
T KOG0472|consen 451 PEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNL 530 (565)
T ss_pred chhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccce
Confidence 34455666688888887643220 0144455555 54 788888888888888888888 78888
Q ss_pred cEEEcCCCCcccCCC
Q 037613 535 VVIEMPHSNIQQFWD 549 (553)
Q Consensus 535 ~~L~l~~s~i~~lp~ 549 (553)
++|+|.++.++ .|.
T Consensus 531 ~hLeL~gNpfr-~Pr 544 (565)
T KOG0472|consen 531 RHLELDGNPFR-QPR 544 (565)
T ss_pred eEEEecCCccC-CCH
Confidence 88888888887 553
No 106
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.94 E-value=0.0029 Score=68.30 Aligned_cols=49 Identities=33% Similarity=0.433 Sum_probs=41.0
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
|.....++|.+..++.+..++.. ...+.++|+.|+||||+|+.+++.+.
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34456799999999999988876 55678999999999999999998653
No 107
>PRK07261 topology modulation protein; Provisional
Probab=96.94 E-value=0.0018 Score=59.23 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=20.7
Q ss_pred EEEEeecCCCchHHHHHHHHhhh
Q 037613 184 LLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.|.|+|++|+||||||+.+....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 108
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.91 E-value=0.056 Score=58.85 Aligned_cols=49 Identities=29% Similarity=0.314 Sum_probs=41.4
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
|.....+||.+..++.|...+.. ...+.++|+.|+||||+|+.+++.+.
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34457799999999999998877 55678999999999999999998654
No 109
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0017 Score=68.42 Aligned_cols=49 Identities=20% Similarity=0.327 Sum_probs=41.1
Q ss_pred CCCccchhhhHhhHHhhccc--------------cCEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 162 NDRLVGVESRVVAIESLLSA--------------APLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~--------------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
..++=|.+..+.++.+++.. .+=|.++|++|+|||.||++++.+..-.|
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf 251 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF 251 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce
Confidence 45678999999988887654 67789999999999999999999876554
No 110
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.88 E-value=0.00084 Score=67.75 Aligned_cols=46 Identities=15% Similarity=0.292 Sum_probs=39.8
Q ss_pred CCccchhhhHhhHHhhccc--------cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 163 DRLVGVESRVVAIESLLSA--------APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~--------~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
..++|.++.++++.+++.. .++++++|++|+||||||+++++.+..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3799999999999988855 578999999999999999999986544
No 111
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.88 E-value=0.00081 Score=64.49 Aligned_cols=52 Identities=23% Similarity=0.454 Sum_probs=43.3
Q ss_pred CCCCCCccchhhhHhhHHhhccc-------cCEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA-------APLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~-------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
|.....|||.++..+++.-.+.. .--+.++|++|.||||||.-+++++..++
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~ 80 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNL 80 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence 45557899999888888776654 56789999999999999999999877664
No 112
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.88 E-value=0.0028 Score=71.01 Aligned_cols=62 Identities=23% Similarity=0.208 Sum_probs=46.5
Q ss_pred hHHHHHHHHHhhhcCCCCCCCCCccchhhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 142 LTEEIVNHILKRLAELFPHNNDRLVGVESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 142 ~i~~iv~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.+++...++....... ..+.++||+.++.++.+.|.. ..-+.++|++|+|||++|+.+++++
T Consensus 168 ~l~~~~~~l~~~a~~g---~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 168 RMENFTTNLNQLARVG---GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred HHHHHHHhHHHHHHcC---CCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 5555555554443322 124599999999999998877 4566789999999999999999865
No 113
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.85 E-value=0.006 Score=62.58 Aligned_cols=121 Identities=20% Similarity=0.300 Sum_probs=78.1
Q ss_pred HHHHHHHhhhcCCCCCCCCCccchhhhHhhHHhhccc------cCEEEEeecCCCchHHHHHHHHhhhcCCCCc--eEEE
Q 037613 145 EIVNHILKRLAELFPHNNDRLVGVESRVVAIESLLSA------APLLAIWGIGGIGKTTIARATFDKISSDFEG--SCFL 216 (553)
Q Consensus 145 ~iv~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~ 216 (553)
++.......+..+ ..+..++||+.++..+.+++.. .+.+-|.|-+|.|||.+...++.+....... .+.+
T Consensus 134 e~~~~~~~~l~~t--~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~i 211 (529)
T KOG2227|consen 134 EISEQRSESLLNT--APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYI 211 (529)
T ss_pred HHHHHHHHHHHhc--CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEE
Confidence 3444444444333 3456799999999999998876 7788999999999999999999876655443 2444
Q ss_pred EechhhhcccCCHHHHHHHHHHhhc----cCCCCcccHHHHHHHhcCC--CeEEEEcCCCCh
Q 037613 217 ENVREESQRLGGLACLRQKLLSNLF----RDESMIPDIDLHFKRLSRR--KVLVVFDDVTCF 272 (553)
Q Consensus 217 ~~~~~~s~~~~~~~~l~~~ll~~l~----~~~~~~~~~~~l~~~L~~k--r~LlVLDdv~~~ 272 (553)
.. .+ ......+..++...+. ......+....+.+..... .+|+|+|..+..
T Consensus 212 nc---~s--l~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L 268 (529)
T KOG2227|consen 212 NC---TS--LTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHL 268 (529)
T ss_pred ee---cc--ccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHH
Confidence 31 11 1334555666665552 2222234445555555443 489999988643
No 114
>PRK08181 transposase; Validated
Probab=96.85 E-value=0.0038 Score=61.16 Aligned_cols=41 Identities=24% Similarity=0.181 Sum_probs=30.9
Q ss_pred hhccccCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 177 SLLSAAPLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 177 ~~L~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
+++....-+.++|++|+|||.||.++++........+.|+.
T Consensus 101 ~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 101 SWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred HHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 44444677999999999999999999987655543445554
No 115
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.83 E-value=0.00024 Score=70.90 Aligned_cols=70 Identities=14% Similarity=0.253 Sum_probs=59.2
Q ss_pred cChhHhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCcccCCC
Q 037613 472 LNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSLPSNI-NQKKLVVIEMPHSNIQQFWD 549 (553)
Q Consensus 472 ~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~~s~i~~lp~ 549 (553)
++....+.+..|.||||.++ +++.+|..+- |++|.||+++++.|+.||.+. +| +|..|-+.|+.++++-+
T Consensus 243 lpae~~~~L~~l~vLDLRdN-------klke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr 314 (565)
T KOG0472|consen 243 LPAEHLKHLNSLLVLDLRDN-------KLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRR 314 (565)
T ss_pred hHHHHhcccccceeeecccc-------ccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHH
Confidence 45566778999999999988 7777998875 899999999999999999999 78 99999999998877643
No 116
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.82 E-value=0.002 Score=56.56 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=20.6
Q ss_pred EEEeecCCCchHHHHHHHHhhh
Q 037613 185 LAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~~~ 206 (553)
|.++|++|+|||+||+.+++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 117
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.82 E-value=0.0052 Score=67.26 Aligned_cols=49 Identities=31% Similarity=0.411 Sum_probs=41.2
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
|.....+||.+..++.|...+.. ...+.++|..|+||||+|+.+++.+.
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~ 63 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLN 63 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 34557899999999999988876 45578999999999999999998653
No 118
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.81 E-value=0.001 Score=60.69 Aligned_cols=62 Identities=19% Similarity=0.401 Sum_probs=28.1
Q ss_pred cCCCCcEEEeecccCCCCCCCccccCCCCCCCCeeEEEecCCCCCCCCCCC--CCCCccEEEcCCCCcccC
Q 037613 479 KMHKLRFLKFYNSINGDNRCKVSYLQESPGFAEVRFLHRHGYPLKSLPSNI--NQKKLVVIEMPHSNIQQF 547 (553)
Q Consensus 479 ~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~L~~Lr~L~l~~~~l~~LP~~i--~L~~L~~L~l~~s~i~~l 547 (553)
.+..|++|+|++| +++.++...+|.+|+.|+++++.|++++..+ .+++|++|+|++++|..+
T Consensus 40 ~l~~L~~L~Ls~N-------~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l 103 (175)
T PF14580_consen 40 TLDKLEVLDLSNN-------QITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDL 103 (175)
T ss_dssp T-TT--EEE-TTS---------S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SC
T ss_pred hhcCCCEEECCCC-------CCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCCh
Confidence 5678899999988 5666764445889999999999999987766 488999999998888765
No 119
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.80 E-value=0.031 Score=61.45 Aligned_cols=49 Identities=27% Similarity=0.351 Sum_probs=40.9
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
|...+.+||.+..++.|...+.. ...+.++|+.|+||||+|+.+++.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34457899999999999888876 45678999999999999999998664
No 120
>PRK05642 DNA replication initiation factor; Validated
Probab=96.77 E-value=0.0054 Score=59.11 Aligned_cols=35 Identities=23% Similarity=0.557 Sum_probs=27.6
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..+.|+|..|+|||.|++++++.+...-..++|+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~ 80 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP 80 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee
Confidence 57899999999999999999987654434455554
No 121
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.76 E-value=0.0045 Score=62.31 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=45.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhc-ccCCHHHHHHHHHHhhccCCCCcccHHHHHHH--hc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQ-RLGGLACLRQKLLSNLFRDESMIPDIDLHFKR--LS 258 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~-~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~--L~ 258 (553)
++.++|||++|+|||.+|++++++....| ...+..+... -....+...+++.... .+. -+
T Consensus 148 PlgllL~GPPGcGKTllAraiA~elg~~~----i~vsa~eL~sk~vGEsEk~IR~~F~~A-------------~~~a~~~ 210 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKMGIEP----IVMSAGELESENAGEPGKLIRQRYREA-------------ADIIKKK 210 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHcCCCe----EEEEHHHhhcCcCCcHHHHHHHHHHHH-------------HHHhhcc
Confidence 78899999999999999999999876653 2222222211 1122334444433321 111 25
Q ss_pred CCCeEEEEcCCCC
Q 037613 259 RRKVLVVFDDVTC 271 (553)
Q Consensus 259 ~kr~LlVLDdv~~ 271 (553)
+++++|++|+++.
T Consensus 211 ~aPcVLFIDEIDA 223 (413)
T PLN00020 211 GKMSCLFINDLDA 223 (413)
T ss_pred CCCeEEEEehhhh
Confidence 6889999999863
No 122
>PHA00729 NTP-binding motif containing protein
Probab=96.74 E-value=0.0051 Score=58.17 Aligned_cols=26 Identities=31% Similarity=0.267 Sum_probs=22.7
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
...|.|+|.+|+||||||.++++++.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34689999999999999999998764
No 123
>PRK06921 hypothetical protein; Provisional
Probab=96.74 E-value=0.0027 Score=62.38 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=28.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC-CCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD-FEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~ 217 (553)
...+.++|..|+|||+||.++++.+..+ -..++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4578999999999999999999987665 34455665
No 124
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.74 E-value=0.0037 Score=57.44 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=25.7
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..-+.++|..|+|||.||.++++....+=..+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 457999999999999999999986554323345554
No 125
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.73 E-value=0.0034 Score=66.84 Aligned_cols=72 Identities=17% Similarity=0.260 Sum_probs=44.5
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCCCCce--EEEEechhhhcccCCHHHHHHHHHHhhccCCCCcccHHHHHHHhcCC
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSDFEGS--CFLENVREESQRLGGLACLRQKLLSNLFRDESMIPDIDLHFKRLSRR 260 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~--~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~k 260 (553)
..+.|+|..|+|||+|++++++.+..+++.. .++. . ..+...+...+... ....+.+.++ +
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-~----------~~~~~~~~~~~~~~-----~~~~~~~~~~-~ 211 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-S----------EKFTNDFVNALRNN-----TMEEFKEKYR-S 211 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-H----------HHHHHHHHHHHHcC-----cHHHHHHHHh-c
Confidence 5689999999999999999999887765432 3332 1 22223333333211 1233444444 3
Q ss_pred CeEEEEcCCCC
Q 037613 261 KVLVVFDDVTC 271 (553)
Q Consensus 261 r~LlVLDdv~~ 271 (553)
.-+|++||++.
T Consensus 212 ~dlLiiDDi~~ 222 (450)
T PRK00149 212 VDVLLIDDIQF 222 (450)
T ss_pred CCEEEEehhhh
Confidence 45899999964
No 126
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.72 E-value=0.004 Score=60.64 Aligned_cols=37 Identities=24% Similarity=0.269 Sum_probs=28.5
Q ss_pred ccCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 181 AAPLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
...-+.++|.+|+|||.||.++.+++...=-.+.|+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3678999999999999999999998883323334443
No 127
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.69 E-value=0.019 Score=64.91 Aligned_cols=49 Identities=22% Similarity=0.298 Sum_probs=41.4
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
|.....+||.+..++.|...+.. ...+.++|+.|+||||+|+.+++.+.
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34456799999999999998876 56789999999999999999998654
No 128
>PRK06526 transposase; Provisional
Probab=96.68 E-value=0.0027 Score=61.88 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=23.7
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
...+.++|++|+|||+||.++..+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHH
Confidence 677999999999999999999986543
No 129
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.67 E-value=0.004 Score=65.34 Aligned_cols=72 Identities=18% Similarity=0.288 Sum_probs=43.7
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCCCCc--eEEEEechhhhcccCCHHHHHHHHHHhhccCCCCcccHHHHHHHhcCC
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSDFEG--SCFLENVREESQRLGGLACLRQKLLSNLFRDESMIPDIDLHFKRLSRR 260 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~k 260 (553)
..+.|+|..|+|||+|++++++.+....+. ++++. . ..+...+...+... ....+.+.+++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-~----------~~~~~~~~~~~~~~-----~~~~~~~~~~~- 199 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-S----------EKFTNDFVNALRNN-----KMEEFKEKYRS- 199 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-H----------HHHHHHHHHHHHcC-----CHHHHHHHHHh-
Confidence 468899999999999999999987665432 23332 1 12233333333221 12333444443
Q ss_pred CeEEEEcCCCC
Q 037613 261 KVLVVFDDVTC 271 (553)
Q Consensus 261 r~LlVLDdv~~ 271 (553)
.-+|+|||++.
T Consensus 200 ~dlLiiDDi~~ 210 (405)
T TIGR00362 200 VDLLLIDDIQF 210 (405)
T ss_pred CCEEEEehhhh
Confidence 34888999974
No 130
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.67 E-value=0.007 Score=57.98 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=30.3
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..++.|+|.+|+|||++|.+++......-..++|++
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 679999999999999999999986655556677776
No 131
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.66 E-value=0.17 Score=54.20 Aligned_cols=49 Identities=27% Similarity=0.315 Sum_probs=41.0
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
|.....++|.+..++.+...+.. .....++|+.|+||||+|+.++..+.
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34456789999999999998876 55678899999999999999998653
No 132
>PRK06696 uridine kinase; Validated
Probab=96.61 E-value=0.0018 Score=61.97 Aligned_cols=27 Identities=37% Similarity=0.364 Sum_probs=24.2
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
..+|+|.|.+|+||||||+.+++.+..
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999999987654
No 133
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.59 E-value=0.037 Score=58.05 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.3
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
+.+|.++|.+|+||||.|..++..+...
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 5689999999999999999999876544
No 134
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.58 E-value=0.0048 Score=62.34 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=28.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
...+.++|..|+|||.||.++++.+...-..++|+.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 567999999999999999999997665534455554
No 135
>PRK06762 hypothetical protein; Provisional
Probab=96.55 E-value=0.0073 Score=54.77 Aligned_cols=24 Identities=42% Similarity=0.632 Sum_probs=22.2
Q ss_pred CEEEEeecCCCchHHHHHHHHhhh
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.+|.|+|++|+||||+|+.+++.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999876
No 136
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.55 E-value=0.0013 Score=66.55 Aligned_cols=51 Identities=22% Similarity=0.260 Sum_probs=42.5
Q ss_pred CCCCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 157 LFPHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 157 ~~~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..|.....++|.++..+.+..++.. ..++.++|++|+||||+|+.+++...
T Consensus 15 yrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~ 68 (316)
T PHA02544 15 YRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG 68 (316)
T ss_pred cCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 3455567899999999999988866 56777799999999999999998764
No 137
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0071 Score=64.93 Aligned_cols=75 Identities=25% Similarity=0.307 Sum_probs=48.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccCCCCcccHHHHHHHhcCCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRDESMIPDIDLHFKRLSRRK 261 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr 261 (553)
..-|.|.|..|+|||+||+++++.+... ..+++.-+....-....++.+++.+- ....+.+...+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~--~~~hv~~v~Cs~l~~~~~e~iQk~l~-------------~vfse~~~~~P 495 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKD--LIAHVEIVSCSTLDGSSLEKIQKFLN-------------NVFSEALWYAP 495 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccc--cceEEEEEechhccchhHHHHHHHHH-------------HHHHHHHhhCC
Confidence 6789999999999999999999987643 33333322211111133455544332 23345667889
Q ss_pred eEEEEcCCCC
Q 037613 262 VLVVFDDVTC 271 (553)
Q Consensus 262 ~LlVLDdv~~ 271 (553)
-+|||||++.
T Consensus 496 SiIvLDdld~ 505 (952)
T KOG0735|consen 496 SIIVLDDLDC 505 (952)
T ss_pred cEEEEcchhh
Confidence 9999999963
No 138
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.54 E-value=0.0054 Score=63.48 Aligned_cols=49 Identities=33% Similarity=0.409 Sum_probs=41.6
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
|...+.++|.+..++.+.+.+.. .+.+.++|+.|+||||+|+.+++.+.
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34456789999999999998866 56889999999999999999988654
No 139
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.54 E-value=0.085 Score=58.44 Aligned_cols=48 Identities=23% Similarity=0.426 Sum_probs=40.7
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
|.....++|.+..++.+...+.. ...+.++|+.|+||||+|+.+++.+
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~L 64 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANAL 64 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 44456799999999999998866 6677899999999999999999864
No 140
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.015 Score=64.29 Aligned_cols=107 Identities=16% Similarity=0.269 Sum_probs=68.9
Q ss_pred CCccchhhhHhhHHhhccc-----------cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHH
Q 037613 163 DRLVGVESRVVAIESLLSA-----------APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLAC 231 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~-----------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~ 231 (553)
...+|.++.++.+.+.+.. ..+....|+.|||||.||++++..+...=+..+-+ +.++.... +.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~-DMSEy~Ek-Hs--- 565 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI-DMSEYMEK-HS--- 565 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee-chHHHHHH-HH---
Confidence 4689999999888887654 34666789999999999999998765432333333 23333222 11
Q ss_pred HHHHHHHhhccCCCCc---ccHHHHHHHhcCCCe-EEEEcCCC--ChHhHHHhh
Q 037613 232 LRQKLLSNLFRDESMI---PDIDLHFKRLSRRKV-LVVFDDVT--CFNQIESFI 279 (553)
Q Consensus 232 l~~~ll~~l~~~~~~~---~~~~~l~~~L~~kr~-LlVLDdv~--~~~~l~~l~ 279 (553)
.+.+.+..+.. +--..|-+.+++++| +|.||.|. +++.++-|+
T Consensus 566 -----VSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilL 614 (786)
T COG0542 566 -----VSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLL 614 (786)
T ss_pred -----HHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHH
Confidence 22233332222 335567778888887 88999997 455555554
No 141
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.53 E-value=0.012 Score=62.17 Aligned_cols=72 Identities=13% Similarity=0.210 Sum_probs=43.1
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccCCCCcccHHHHHHHhcCCCe
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRDESMIPDIDLHFKRLSRRKV 262 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr~ 262 (553)
.-+.|+|+.|+|||+|++++++.+...-..++++. ...+...+...+... .....++..+ ..-
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-----------~~~f~~~~~~~l~~~-----~~~~f~~~~~-~~d 204 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-----------SELFTEHLVSAIRSG-----EMQRFRQFYR-NVD 204 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-----------HHHHHHHHHHHHhcc-----hHHHHHHHcc-cCC
Confidence 45889999999999999999998765433344443 122333333333211 1223344333 345
Q ss_pred EEEEcCCCC
Q 037613 263 LVVFDDVTC 271 (553)
Q Consensus 263 LlVLDdv~~ 271 (553)
+|++||+..
T Consensus 205 vLiIDDiq~ 213 (445)
T PRK12422 205 ALFIEDIEV 213 (445)
T ss_pred EEEEcchhh
Confidence 888899854
No 142
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.53 E-value=0.0061 Score=57.15 Aligned_cols=90 Identities=14% Similarity=0.082 Sum_probs=52.5
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE-echhhhcccCCHHHHHHHHHHhhccCCCCcccHHHHHHHhcCCC
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE-NVREESQRLGGLACLRQKLLSNLFRDESMIPDIDLHFKRLSRRK 261 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~-~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr 261 (553)
.+|.|+|+.|+||||++..+...+.......++.. +..+... .... .+..+...........+.++..++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~--~~~~----~~i~q~~vg~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVH--ESKR----SLINQREVGLDTLSFENALKAALRQDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccc--cCcc----ceeeecccCCCccCHHHHHHHHhcCCc
Confidence 47899999999999999998887665544444432 1111000 0000 001000000011234566777788788
Q ss_pred eEEEEcCCCChHhHHHh
Q 037613 262 VLVVFDDVTCFNQIESF 278 (553)
Q Consensus 262 ~LlVLDdv~~~~~l~~l 278 (553)
=.+++|.+.+.+.+...
T Consensus 76 d~ii~gEird~e~~~~~ 92 (198)
T cd01131 76 DVILVGEMRDLETIRLA 92 (198)
T ss_pred CEEEEcCCCCHHHHHHH
Confidence 89999999877665543
No 143
>PRK09183 transposase/IS protein; Provisional
Probab=96.52 E-value=0.011 Score=57.85 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=22.7
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
...+.|+|++|+|||+||.+++....
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 56788999999999999999987643
No 144
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.52 E-value=0.0021 Score=70.23 Aligned_cols=51 Identities=24% Similarity=0.358 Sum_probs=42.5
Q ss_pred CCCCCCCCccchhhhHhhHHhhccc-------cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 157 LFPHNNDRLVGVESRVVAIESLLSA-------APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 157 ~~~~~~~~~vGr~~~~~~l~~~L~~-------~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..|...+.++|-+..++++..++.. .+++.|+|++|+||||+++.++..+.
T Consensus 78 yrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 78 YKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3455567899999999999998865 45699999999999999999998653
No 145
>CHL00176 ftsH cell division protein; Validated
Probab=96.46 E-value=0.0078 Score=66.21 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=36.1
Q ss_pred CCCCccchhhhHhhHHhhccc--------------cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 161 NNDRLVGVESRVVAIESLLSA--------------APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~--------------~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
...+++|.++..+++.+.+.. .+-+.++|++|+|||+||++++....
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~ 241 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE 241 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 345688888777766665422 44689999999999999999998653
No 146
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.44 E-value=0.012 Score=51.68 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=21.1
Q ss_pred EEEEeecCCCchHHHHHHHHhhhc
Q 037613 184 LLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
+|.+.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987544
No 147
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.43 E-value=0.0036 Score=57.42 Aligned_cols=36 Identities=31% Similarity=0.610 Sum_probs=31.5
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..+|.+.|+.|+||||+|+.+++.+...+...+++.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 568999999999999999999998887777777764
No 148
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.42 E-value=0.0028 Score=59.26 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=23.2
Q ss_pred EEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 184 LLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
+|+|.|.+|+||||+|+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999977643
No 149
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=96.42 E-value=0.00079 Score=70.38 Aligned_cols=82 Identities=20% Similarity=0.248 Sum_probs=66.1
Q ss_pred cCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCC-CCCCeeEEEecCCCCCCCCCC-C-CCCCccEEEc
Q 037613 463 DMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESP-GFAEVRFLHRHGYPLKSLPSN-I-NQKKLVVIEM 539 (553)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i-~L~~Lr~L~l~~~~l~~LP~~-i-~L~~L~~L~l 539 (553)
..+.++--++...+|..|++|+.|||.++.++- .++.-..-+ ||..||.|.|.|++++++|.. | .|.+|+.|||
T Consensus 347 nLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~---~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL 423 (873)
T KOG4194|consen 347 NLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSW---CIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDL 423 (873)
T ss_pred cccccchHHHHhhHHHHhhhhhhhcCcCCeEEE---EEecchhhhccchhhhheeecCceeeecchhhhccCcccceecC
Confidence 344444456677789999999999999987776 666655445 499999999999999999965 5 7999999999
Q ss_pred CCCCcccC
Q 037613 540 PHSNIQQF 547 (553)
Q Consensus 540 ~~s~i~~l 547 (553)
-++-|..+
T Consensus 424 ~~NaiaSI 431 (873)
T KOG4194|consen 424 GDNAIASI 431 (873)
T ss_pred CCCcceee
Confidence 99887654
No 150
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.42 E-value=0.011 Score=55.93 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=30.4
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..++.|+|++|+|||++|.+++......-..++|++
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 578999999999999999999887655556778887
No 151
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.40 E-value=0.029 Score=61.05 Aligned_cols=49 Identities=29% Similarity=0.403 Sum_probs=40.5
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
|.....++|-+..++.|...+.. ...+.++|+.|+||||+|+.+++.+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence 34456789998888888888866 56788999999999999999998654
No 152
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.40 E-value=0.0068 Score=68.62 Aligned_cols=49 Identities=18% Similarity=0.314 Sum_probs=39.5
Q ss_pred CCCCccchhhhHhhHHhhccc---------------cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 161 NNDRLVGVESRVVAIESLLSA---------------APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~---------------~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
..+.+.|.+..++++.+.+.. .+-+.++|++|+|||+||+++++.....
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~ 239 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY 239 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe
Confidence 345688999999888876532 4678999999999999999999976543
No 153
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=96.40 E-value=0.017 Score=58.72 Aligned_cols=125 Identities=20% Similarity=0.337 Sum_probs=82.1
Q ss_pred hhHHHHHhhCCCeEeecC-CCCCCCcccHHHHHHHHhccceeEeecCCccc--------hhhhHHHHHHHHHhhhhcCCe
Q 037613 3 NYLYSALSRKSIETFIDD-QLNRGDKISQSLVNAIEASTISVIIFSEGYAS--------SRWCLDELLKILECKREYVQI 73 (553)
Q Consensus 3 ~~l~~~L~~~gi~~f~d~-~~~~g~~~~~~~~~ai~~s~~~ivv~S~~y~~--------S~wcl~EL~~i~~~~~~~~~~ 73 (553)
|-+..-|.-+|++||+|- ++..|. +.+.+++-|..++-.|.|+|||-.. -.|-..|+.-.++|.+ .
T Consensus 629 SLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nCeDWVHKEl~~Afe~~K----N 703 (832)
T KOG3678|consen 629 SLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCEDWVHKELKCAFEHQK----N 703 (832)
T ss_pred HHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccHHHHHHHHHHHHHHhcC----C
Confidence 445566788999999997 888884 6688999999999999999998653 3466667766666653 4
Q ss_pred EEeEEeeeCCcccccccCchHHHHHHHHHHhhhchhhHHHHHHHHHHhhhccCCccccccCCCCchhhhHHHHHHHHHhh
Q 037613 74 VIPVFYRVDPSDVRNQTGTFGDSFSKLEERFKENSKKLQSWRNALKEAASLSGFHSHNIRQLNLPESELTEEIVNHILKR 153 (553)
Q Consensus 74 vlPvfy~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~~~~w~~al~~v~~~~g~~~~~~~~~~~~e~~~i~~iv~~v~~~ 153 (553)
++|||=.. |+ +... -....+.+..+....|..-.. .|+...+.+|+.-+.-.
T Consensus 704 IiPI~D~a---------------FE-----~Pt~---ed~iPnDirmi~kyNGvKWvH-----dYQdA~maKvvRFitGe 755 (832)
T KOG3678|consen 704 IIPIFDTA---------------FE-----FPTK---EDQIPNDIRMITKYNGVKWVH-----DYQDACMAKVVRFITGE 755 (832)
T ss_pred eeeeeccc---------------cc-----CCCc---hhcCcHHHHHHHhccCeeeeh-----hhHHHHHHHHHHHHhcc
Confidence 99998321 10 1100 011122233444455533221 45777888888888877
Q ss_pred hcCCCCC
Q 037613 154 LAELFPH 160 (553)
Q Consensus 154 l~~~~~~ 160 (553)
++.+.|.
T Consensus 756 ~nRttpt 762 (832)
T KOG3678|consen 756 LNRTTPT 762 (832)
T ss_pred ccCCCCC
Confidence 7766543
No 154
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.40 E-value=0.0026 Score=54.65 Aligned_cols=22 Identities=45% Similarity=0.702 Sum_probs=20.4
Q ss_pred EEEeecCCCchHHHHHHHHhhh
Q 037613 185 LAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~~~ 206 (553)
|+|.|+.|+||||+|+++.++.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999875
No 155
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.40 E-value=0.059 Score=58.64 Aligned_cols=49 Identities=27% Similarity=0.340 Sum_probs=41.8
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
|.....++|-+..++.+...+.. ...+.++|+.|+||||+|+.+++.+-
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 44557899999999999998876 66788999999999999999998653
No 156
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.0028 Score=68.25 Aligned_cols=48 Identities=25% Similarity=0.459 Sum_probs=42.6
Q ss_pred CCccchhhhHhhHHhhccc--------cCEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 163 DRLVGVESRVVAIESLLSA--------APLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~--------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
.+..|.++-.++|.++|.- .++++++|++|+|||.|++.+++.+...|
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkf 378 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKF 378 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCE
Confidence 4778999999999998864 68999999999999999999999887776
No 157
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.38 E-value=0.0026 Score=62.42 Aligned_cols=25 Identities=32% Similarity=0.278 Sum_probs=21.7
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..-+.++|++|+||||+|+.+++.+
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999864
No 158
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.38 E-value=0.015 Score=56.08 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=27.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC------CCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD------FEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~------F~~~~~~~ 217 (553)
..++.|+|.+|+|||+||.+++...... -..++|++
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 6789999999999999999997543221 25677776
No 159
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.38 E-value=0.0062 Score=65.63 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=35.6
Q ss_pred CCCCccchhhhHhhHHhhccc--------------cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 161 NNDRLVGVESRVVAIESLLSA--------------APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~--------------~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
..++++|.+...+++.+.+.. .+-+.++|++|+|||+||+++++....
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~ 114 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV 114 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC
Confidence 345678888776666554431 456889999999999999999986543
No 160
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.0031 Score=62.49 Aligned_cols=48 Identities=21% Similarity=0.455 Sum_probs=39.0
Q ss_pred CCccchhhhHhhHHhhccc---------------cCEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 163 DRLVGVESRVVAIESLLSA---------------APLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~---------------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
...=|.++++++|.+...- ++=|.+||++|.|||-||++|+++....|
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF 213 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF 213 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE
Confidence 3455788888888886543 67789999999999999999999866544
No 161
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.35 E-value=0.014 Score=54.76 Aligned_cols=56 Identities=23% Similarity=0.364 Sum_probs=43.7
Q ss_pred CCCCCCCCccchhhhHhhHHhhcc----c--cCEEEEeecCCCchHHHHHHHHhhhcCCCCc
Q 037613 157 LFPHNNDRLVGVESRVVAIESLLS----A--APLLAIWGIGGIGKTTIARATFDKISSDFEG 212 (553)
Q Consensus 157 ~~~~~~~~~vGr~~~~~~l~~~L~----~--~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~ 212 (553)
..+.+-..++|.+...+.+.+--. . .--|.+||--|+|||.|++++.+.+......
T Consensus 54 ~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 54 PDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred CCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 334445678999888877766332 2 5678999999999999999999998887665
No 162
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.33 E-value=0.017 Score=56.83 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=24.1
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
.+++.++|++|+||||.+..++......
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~ 99 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQ 99 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 5789999999999999999998866544
No 163
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.33 E-value=0.0042 Score=69.62 Aligned_cols=61 Identities=13% Similarity=0.206 Sum_probs=45.7
Q ss_pred CCCcEEEeecccCCCCCCCccccCCCCCCCCeeEEEecCCCCCCCCCCCCCCCccEEEcCCCCcccCCCC
Q 037613 481 HKLRFLKFYNSINGDNRCKVSYLQESPGFAEVRFLHRHGYPLKSLPSNINQKKLVVIEMPHSNIQQFWDG 550 (553)
Q Consensus 481 ~~LrvL~l~~~~~~~~~~~l~~lp~~i~L~~Lr~L~l~~~~l~~LP~~i~L~~L~~L~l~~s~i~~lp~~ 550 (553)
.+|+.|+|++| .+..+|..+ ..+|++|++++|+++.+|..+. .+|++|+|++|+++.+|.+
T Consensus 241 ~~L~~L~Ls~N-------~L~~LP~~l-~s~L~~L~Ls~N~L~~LP~~l~-~sL~~L~Ls~N~Lt~LP~~ 301 (754)
T PRK15370 241 DTIQEMELSIN-------RITELPERL-PSALQSLDLFHNKISCLPENLP-EELRYLSVYDNSIRTLPAH 301 (754)
T ss_pred ccccEEECcCC-------ccCcCChhH-hCCCCEEECcCCccCccccccC-CCCcEEECCCCccccCccc
Confidence 35777777776 444466443 2578889998888888888773 4899999999999888864
No 164
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.32 E-value=0.2 Score=54.93 Aligned_cols=49 Identities=24% Similarity=0.377 Sum_probs=41.1
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
|.....++|.+..++.|...+.. ...+.++|+.|+||||+|+.+++.+.
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 34557899999999999988866 56678999999999999999998653
No 165
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.30 E-value=0.0088 Score=63.37 Aligned_cols=74 Identities=23% Similarity=0.395 Sum_probs=44.0
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCCCCc--eEEEEechhhhcccCCHHHHHHHHHHhhccCCCCcccHHHHHHHhcCC
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSDFEG--SCFLENVREESQRLGGLACLRQKLLSNLFRDESMIPDIDLHFKRLSRR 260 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~k 260 (553)
.-+.|+|..|+|||+|++++++.+....+. ++++. ...+...+...+.... .....+.+.++ .
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-----------~~~f~~~~~~~l~~~~---~~~~~~~~~~~-~ 206 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-----------GDEFARKAVDILQKTH---KEIEQFKNEIC-Q 206 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHHhh---hHHHHHHHHhc-c
Confidence 458899999999999999999976543322 23332 2334444444443211 12233344443 3
Q ss_pred CeEEEEcCCCC
Q 037613 261 KVLVVFDDVTC 271 (553)
Q Consensus 261 r~LlVLDdv~~ 271 (553)
.-+||+||+..
T Consensus 207 ~dvLiIDDiq~ 217 (450)
T PRK14087 207 NDVLIIDDVQF 217 (450)
T ss_pred CCEEEEecccc
Confidence 45888999964
No 166
>PLN03150 hypothetical protein; Provisional
Probab=96.27 E-value=0.0029 Score=70.00 Aligned_cols=64 Identities=9% Similarity=0.219 Sum_probs=53.9
Q ss_pred CCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCC-CCCCCC-CCCCccEEEcCCCCcc-cCCCCC
Q 037613 482 KLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLK-SLPSNI-NQKKLVVIEMPHSNIQ-QFWDGT 551 (553)
Q Consensus 482 ~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~-~LP~~i-~L~~L~~L~l~~s~i~-~lp~~~ 551 (553)
.++.|+|.++.+.+ .+|..++ |.+|++|+|++|.+. .+|..+ ++.+|++|+|+++++. .+|..+
T Consensus 419 ~v~~L~L~~n~L~g------~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l 486 (623)
T PLN03150 419 FIDGLGLDNQGLRG------FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486 (623)
T ss_pred EEEEEECCCCCccc------cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH
Confidence 37888999886554 4788886 999999999999986 899999 7999999999999987 567643
No 167
>PRK07667 uridine kinase; Provisional
Probab=96.26 E-value=0.0058 Score=57.01 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=23.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
..+|+|.|.+|+||||+|+.+...+..
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 568999999999999999999987654
No 168
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.25 E-value=0.019 Score=54.63 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=28.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..++.|+|.+|+||||+|.+++......=..++|+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 678999999999999999999987654434556665
No 169
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.24 E-value=0.07 Score=57.91 Aligned_cols=28 Identities=29% Similarity=0.350 Sum_probs=24.2
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
..+.|+|..|+|||.|++++++.....+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~ 342 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLY 342 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhC
Confidence 4589999999999999999999876544
No 170
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.24 E-value=0.0069 Score=63.56 Aligned_cols=45 Identities=18% Similarity=0.062 Sum_probs=40.4
Q ss_pred CCccchhhhHhhHHhhccccCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 163 DRLVGVESRVVAIESLLSAAPLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..++||++.++.+...+....-|.|.|++|+|||+||+.+.....
T Consensus 20 ~~i~gre~vI~lll~aalag~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred hhccCcHHHHHHHHHHHccCCCEEEECCCChhHHHHHHHHHHHhc
Confidence 359999999999999888888899999999999999999998654
No 171
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.23 E-value=0.036 Score=62.69 Aligned_cols=45 Identities=18% Similarity=0.345 Sum_probs=36.6
Q ss_pred CCccchhhhHhhHHhhccc-----------cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 163 DRLVGVESRVVAIESLLSA-----------APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~-----------~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..++|.+..++.+...+.. ..++.++|+.|+|||+||+.+++.+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 4688999888888777653 23578999999999999999999763
No 172
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.23 E-value=0.025 Score=54.08 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=28.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCC------CceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDF------EGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~ 217 (553)
..++.|+|.+|+|||+||..++......- ..++|+.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 67999999999999999999987654443 4557776
No 173
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.23 E-value=0.006 Score=68.40 Aligned_cols=81 Identities=17% Similarity=0.355 Sum_probs=56.6
Q ss_pred ccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCCCCCCeeEEEecCCCCCCCCCCCCCCCcc
Q 037613 456 SIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPGFAEVRFLHRHGYPLKSLPSNINQKKLV 535 (553)
Q Consensus 456 ~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~L~~Lr~L~l~~~~l~~LP~~i~L~~L~ 535 (553)
.++.+.++.+.. ..++.... .+|+.|+|+++ .+..+|..+. .+|++|++++|+++.+|..+. .+|+
T Consensus 242 ~L~~L~Ls~N~L--~~LP~~l~---s~L~~L~Ls~N-------~L~~LP~~l~-~sL~~L~Ls~N~Lt~LP~~lp-~sL~ 307 (754)
T PRK15370 242 TIQEMELSINRI--TELPERLP---SALQSLDLFHN-------KISCLPENLP-EELRYLSVYDNSIRTLPAHLP-SGIT 307 (754)
T ss_pred cccEEECcCCcc--CcCChhHh---CCCCEEECcCC-------ccCccccccC-CCCcEEECCCCccccCcccch-hhHH
Confidence 344444444332 23443332 47999999887 5555775442 589999999999999997663 4788
Q ss_pred EEEcCCCCcccCCCC
Q 037613 536 VIEMPHSNIQQFWDG 550 (553)
Q Consensus 536 ~L~l~~s~i~~lp~~ 550 (553)
.|+|+++++..+|..
T Consensus 308 ~L~Ls~N~Lt~LP~~ 322 (754)
T PRK15370 308 HLNVQSNSLTALPET 322 (754)
T ss_pred HHHhcCCccccCCcc
Confidence 999999999988864
No 174
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.22 E-value=0.00098 Score=73.29 Aligned_cols=66 Identities=18% Similarity=0.299 Sum_probs=48.7
Q ss_pred hhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCcccCCC
Q 037613 477 FVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSLPSNI-NQKKLVVIEMPHSNIQQFWD 549 (553)
Q Consensus 477 ~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~~s~i~~lp~ 549 (553)
+..+..|+.|.++.+ .+..+|.+++ +++|+||.|.++.+..+|.++ ++++|+.||++.++....|.
T Consensus 64 it~l~~L~~ln~s~n-------~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl 131 (1081)
T KOG0618|consen 64 ITLLSHLRQLNLSRN-------YIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPL 131 (1081)
T ss_pred hhhHHHHhhcccchh-------hHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCch
Confidence 445555666666655 5666777775 888888888888888888888 78888888888877766664
No 175
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.22 E-value=0.036 Score=63.53 Aligned_cols=108 Identities=16% Similarity=0.230 Sum_probs=62.3
Q ss_pred CCccchhhhHhhHHhhccc-----------cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHH
Q 037613 163 DRLVGVESRVVAIESLLSA-----------APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLAC 231 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~-----------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~ 231 (553)
..++|.+..++.+...+.. ...+.++|+.|+|||+||+.+++.+...-...+-+ +.++.... .....
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~-d~s~~~~~-~~~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRL-DMSEYMEK-HTVSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEE-Echhcccc-ccHHH
Confidence 5689999999988877653 22467899999999999999998764332222222 23332222 22211
Q ss_pred HHHHHHHhhccCC--CCcccHHHHHHHhcCCC-eEEEEcCCCC--hHhHHHhh
Q 037613 232 LRQKLLSNLFRDE--SMIPDIDLHFKRLSRRK-VLVVFDDVTC--FNQIESFI 279 (553)
Q Consensus 232 l~~~ll~~l~~~~--~~~~~~~~l~~~L~~kr-~LlVLDdv~~--~~~l~~l~ 279 (553)
+ ++.+. ...+....+.+.++.++ -+++||+++. .+.++.|+
T Consensus 587 l-------~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Ll 632 (821)
T CHL00095 587 L-------IGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLL 632 (821)
T ss_pred h-------cCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHH
Confidence 1 11111 01122234556666665 4899999974 33444443
No 176
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.21 E-value=0.0057 Score=54.48 Aligned_cols=35 Identities=29% Similarity=0.329 Sum_probs=29.2
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
.+|-|+|.+|+||||||+++.+++...-..+.++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 47889999999999999999999887766666664
No 177
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.21 E-value=0.37 Score=53.22 Aligned_cols=48 Identities=31% Similarity=0.412 Sum_probs=40.8
Q ss_pred CCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 160 HNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 160 ~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.....++|.+..++.|..++.. ...+.++|+.|+||||+|+.+++.+.
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~ 63 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN 63 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc
Confidence 4456789999999999888876 46778999999999999999998654
No 178
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.18 E-value=0.0089 Score=55.83 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=25.3
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFL 216 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 216 (553)
++++.++|+.|+||||.+.+++.+...+=..+..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~li 35 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALI 35 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceee
Confidence 46899999999999998888887655442233444
No 179
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.075 Score=53.49 Aligned_cols=69 Identities=20% Similarity=0.246 Sum_probs=45.2
Q ss_pred CchhhhHHHHHHHHHhhhcCCCCCCCCCccchhhhHhhHHhhccc--------------cCEEEEeecCCCchHHHHHHH
Q 037613 137 LPESELTEEIVNHILKRLAELFPHNNDRLVGVESRVVAIESLLSA--------------APLLAIWGIGGIGKTTIARAT 202 (553)
Q Consensus 137 ~~e~~~i~~iv~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~--------------~~vi~I~G~gGiGKTtLA~~v 202 (553)
+++..+++.+-.+|...-+. ..=+.+.|.++..+-|.+.... =+-|.++|++|.|||-||++|
T Consensus 189 ~~d~~Lve~lerdIl~~np~---ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAv 265 (491)
T KOG0738|consen 189 GYDADLVEALERDILQRNPN---IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAV 265 (491)
T ss_pred cchHHHHHHHHHHHhccCCC---cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHH
Confidence 44555555555555443222 2335677887777666654332 346889999999999999999
Q ss_pred HhhhcC
Q 037613 203 FDKISS 208 (553)
Q Consensus 203 ~~~~~~ 208 (553)
|.+-..
T Consensus 266 ATEc~t 271 (491)
T KOG0738|consen 266 ATECGT 271 (491)
T ss_pred HHhhcC
Confidence 987553
No 180
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.17 E-value=0.029 Score=57.33 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=24.1
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
.++|+++|++|+||||++..++..+..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~ 268 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGK 268 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 5799999999999999999998865433
No 181
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.15 E-value=0.01 Score=56.86 Aligned_cols=48 Identities=23% Similarity=0.453 Sum_probs=32.9
Q ss_pred CCCCCcc-chhh-hHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 160 HNNDRLV-GVES-RVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 160 ~~~~~~v-Gr~~-~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
...++|+ |... .+..+.++... .+.+.|+|..|+|||+||+++++...
T Consensus 15 ~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~ 67 (227)
T PRK08903 15 PTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS 67 (227)
T ss_pred hhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3345555 4433 33444444432 56899999999999999999998653
No 182
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.15 E-value=0.022 Score=57.08 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=27.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..-+.++|..|+|||.||.++++.+...=..+.|+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 346889999999999999999998765433345554
No 183
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.14 E-value=0.032 Score=64.14 Aligned_cols=47 Identities=28% Similarity=0.435 Sum_probs=38.5
Q ss_pred CCccchhhhHhhHHhhccc-----------cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 163 DRLVGVESRVVAIESLLSA-----------APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~-----------~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
..++|.+..++.+...+.. ..++.++|+.|+|||++|+.++......
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 4689999999988887754 2357899999999999999999876443
No 184
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.14 E-value=0.0012 Score=72.56 Aligned_cols=84 Identities=18% Similarity=0.243 Sum_probs=66.9
Q ss_pred cccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCCCCCC-CCCCccEEE
Q 037613 461 CLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSLPSNI-NQKKLVVIE 538 (553)
Q Consensus 461 ~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~ 538 (553)
.+....+..+..|.++..+.-.|+.||++++ .+..+|..|- +.+|+.|+++.+-|.++|.++ ++.+|++|+
T Consensus 25 ~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn-------~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~ln 97 (1081)
T KOG0618|consen 25 ILNLRRNSLLSRPLEFVEKRVKLKSLDLSNN-------QISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLN 97 (1081)
T ss_pred hhhccccccccCchHHhhheeeeEEeecccc-------ccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhhe
Confidence 3444444344445555555444999999999 4555998885 899999999999999999999 899999999
Q ss_pred cCCCCcccCCCCC
Q 037613 539 MPHSNIQQFWDGT 551 (553)
Q Consensus 539 l~~s~i~~lp~~~ 551 (553)
|.++.+..+|.++
T Consensus 98 L~~n~l~~lP~~~ 110 (1081)
T KOG0618|consen 98 LKNNRLQSLPASI 110 (1081)
T ss_pred eccchhhcCchhH
Confidence 9999999999765
No 185
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.12 E-value=0.35 Score=47.38 Aligned_cols=59 Identities=27% Similarity=0.317 Sum_probs=47.3
Q ss_pred CCCCCCCccchhhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhhcC--CCCceEEE
Q 037613 158 FPHNNDRLVGVESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDKISS--DFEGSCFL 216 (553)
Q Consensus 158 ~~~~~~~~vGr~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~ 216 (553)
.|...+.++|.+..+..+...+.. .+....+|++|.|||+-|.+++.++-. -|++++-=
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ 93 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE 93 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh
Confidence 345567899999999988888766 788999999999999999999986543 36666543
No 186
>PTZ00301 uridine kinase; Provisional
Probab=96.10 E-value=0.0041 Score=58.67 Aligned_cols=27 Identities=19% Similarity=0.460 Sum_probs=23.4
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
.+|||.|.+|+||||||+.+.+++...
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~~~ 30 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMAH 30 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHHhh
Confidence 589999999999999999998876443
No 187
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.09 E-value=0.19 Score=54.11 Aligned_cols=48 Identities=31% Similarity=0.383 Sum_probs=40.5
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
|.....++|-+...+.+...+.. ..+..++|+.|+||||+|+.+++.+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L 60 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARAL 60 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHh
Confidence 34457799999999999888866 5577899999999999999999865
No 188
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.07 E-value=0.029 Score=51.56 Aligned_cols=27 Identities=33% Similarity=0.575 Sum_probs=23.2
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
+.|.+.|.+|+||||+|+++++.+++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 568889999999999999999866554
No 189
>PTZ00494 tuzin-like protein; Provisional
Probab=96.05 E-value=0.063 Score=55.18 Aligned_cols=121 Identities=14% Similarity=0.091 Sum_probs=76.2
Q ss_pred HHHHHHHHHh-------------hhccCCccccccCCCCchhhhHHHHHHHHHhhhcCC------CCCCCCCccchhhhH
Q 037613 112 QSWRNALKEA-------------ASLSGFHSHNIRQLNLPESELTEEIVNHILKRLAEL------FPHNNDRLVGVESRV 172 (553)
Q Consensus 112 ~~w~~al~~v-------------~~~~g~~~~~~~~~~~~e~~~i~~iv~~v~~~l~~~------~~~~~~~~vGr~~~~ 172 (553)
..||-++++- ....||.++++.. ..-+....-.++.+++.+++. .+.....+|.|+.+-
T Consensus 303 Rd~RY~l~KYsG~vSa~~a~Lgv~svFgwN~knYr~--qQRs~Ql~~Av~TLsk~~~~~~~~~~~a~a~~~~~V~R~~eE 380 (664)
T PTZ00494 303 TNFRYALAKYKGTMSCIAGVLVVAYVFTANLRAYRR--QQRGHQLRTAIETLSKAARPRKEEGMLAAAAEAFEVRREDEE 380 (664)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHHHHhhcccCCCcccccccccccccccchhhHH
Confidence 3588877663 3344677766542 122334444555555554432 245567899999998
Q ss_pred hhHHhhccc-----cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccCCC
Q 037613 173 VAIESLLSA-----APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRDES 245 (553)
Q Consensus 173 ~~l~~~L~~-----~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~ 245 (553)
..+.+.|.. ++++.+.|.-|+||++|.+....+.. -..++++ ++. .+.-++.+.+.++-++.
T Consensus 381 ~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~---~paV~VD-VRg-------~EDtLrsVVKALgV~nv 447 (664)
T PTZ00494 381 ALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEG---VALVHVD-VGG-------TEDTLRSVVRALGVSNV 447 (664)
T ss_pred HHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcC---CCeEEEE-ecC-------CcchHHHHHHHhCCCCh
Confidence 888888766 89999999999999999988765422 2346665 432 23334455555655533
No 190
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.03 E-value=0.005 Score=65.55 Aligned_cols=47 Identities=21% Similarity=0.298 Sum_probs=40.2
Q ss_pred CCccchhhhHhhHHhhccc--------cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 163 DRLVGVESRVVAIESLLSA--------APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~--------~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
.+++|.++.+++|.+.|.. .+++.++|++|+||||||+.+++-+...
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 3689999999999998833 7899999999999999999999855443
No 191
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.03 E-value=0.036 Score=63.55 Aligned_cols=46 Identities=22% Similarity=0.367 Sum_probs=37.4
Q ss_pred CCCccchhhhHhhHHhhccc-----------cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 162 NDRLVGVESRVVAIESLLSA-----------APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~-----------~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
...++|.+..++.+...+.. ..++.++|+.|+|||+||+.+++...
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF 623 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 35688999998888777653 14688999999999999999998654
No 192
>PRK08233 hypothetical protein; Provisional
Probab=96.02 E-value=0.0049 Score=56.71 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.5
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhc
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.+|+|.|.+|+||||||+.++..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999998653
No 193
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.01 E-value=0.0021 Score=36.83 Aligned_cols=19 Identities=32% Similarity=0.620 Sum_probs=12.1
Q ss_pred CeeEEEecCCCCCCCCCCC
Q 037613 511 EVRFLHRHGYPLKSLPSNI 529 (553)
Q Consensus 511 ~Lr~L~l~~~~l~~LP~~i 529 (553)
+|++|++++|+++++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp TESEEEETSSEESEEGTTT
T ss_pred CccEEECCCCcCEeCChhh
Confidence 4666666666666666654
No 194
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.01 E-value=0.047 Score=56.49 Aligned_cols=25 Identities=28% Similarity=0.215 Sum_probs=21.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..++.++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998753
No 195
>PRK03839 putative kinase; Provisional
Probab=95.99 E-value=0.0052 Score=56.61 Aligned_cols=24 Identities=38% Similarity=0.675 Sum_probs=21.8
Q ss_pred EEEEeecCCCchHHHHHHHHhhhc
Q 037613 184 LLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.|.|.|++|+||||+|+.++++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999764
No 196
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.98 E-value=0.065 Score=55.63 Aligned_cols=44 Identities=30% Similarity=0.345 Sum_probs=34.5
Q ss_pred CCccchhhhHhhHHhhccc------------cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 163 DRLVGVESRVVAIESLLSA------------APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~------------~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
+.++|.+..++.+...+.. ...+.++|+.|+|||++|+.+++.+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4577877777777776654 2458899999999999999998854
No 197
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.97 E-value=0.00079 Score=57.62 Aligned_cols=80 Identities=19% Similarity=0.202 Sum_probs=68.1
Q ss_pred cCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCCCCCC-CCCCccEEEcC
Q 037613 463 DMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSLPSNI-NQKKLVVIEMP 540 (553)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~ 540 (553)
+.+++....+++.+-.++..+..|.|.++ .+..+|+.+- +..||.|+++.+++...|.-| .|.+|-.||..
T Consensus 59 ~ls~N~fk~fp~kft~kf~t~t~lNl~~n-------eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 59 SLSDNGFKKFPKKFTIKFPTATTLNLANN-------EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred ecccchhhhCCHHHhhccchhhhhhcchh-------hhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 34444456678888888889999999998 5666998884 999999999999999999999 89999999999
Q ss_pred CCCcccCCC
Q 037613 541 HSNIQQFWD 549 (553)
Q Consensus 541 ~s~i~~lp~ 549 (553)
++.+.++|-
T Consensus 132 ~na~~eid~ 140 (177)
T KOG4579|consen 132 ENARAEIDV 140 (177)
T ss_pred CCccccCcH
Confidence 999888873
No 198
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.97 E-value=0.0062 Score=63.61 Aligned_cols=49 Identities=24% Similarity=0.308 Sum_probs=41.0
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
|.....++|.+..++.|...+.. ...+.++|+.|+||||+|..+++.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc
Confidence 34457899999999999888876 45688999999999999999998664
No 199
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.94 E-value=0.006 Score=46.42 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=21.0
Q ss_pred EEEEeecCCCchHHHHHHHHhhh
Q 037613 184 LLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
+|+|.|..|+||||+|+.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 200
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.91 E-value=0.025 Score=63.55 Aligned_cols=45 Identities=16% Similarity=0.236 Sum_probs=37.3
Q ss_pred CCccchhhhHhhHHhhccc-----------cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 163 DRLVGVESRVVAIESLLSA-----------APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~-----------~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..++|.++.++.|...+.. ...+.++|++|+|||++|+.++....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999888887652 24688999999999999999998764
No 201
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.91 E-value=0.097 Score=53.43 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=26.7
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
.+++.++|+.|+||||++..++.....+-..+.+++
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 678999999999999999999876533322344443
No 202
>PRK04040 adenylate kinase; Provisional
Probab=95.89 E-value=0.0078 Score=55.86 Aligned_cols=25 Identities=28% Similarity=0.647 Sum_probs=22.9
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhc
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.+|+|+|++|+||||+++.+.+++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999874
No 203
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.87 E-value=0.006 Score=57.70 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=23.0
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..+|+|.|.+|+||||||+.++..+
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999876
No 204
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.87 E-value=0.023 Score=59.53 Aligned_cols=89 Identities=17% Similarity=0.223 Sum_probs=55.4
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccC--------CCCc------
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRD--------ESMI------ 247 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~--------~~~~------ 247 (553)
-..++|.|..|+|||||+..++.....+.+..+.+.-+++-. ..+..+.+.++..-... ....
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~---rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERT---REGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCc---HHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 678999999999999999998876655444444444343322 34556666665432111 0110
Q ss_pred --ccHHHHHHHh---cCCCeEEEEcCCCChH
Q 037613 248 --PDIDLHFKRL---SRRKVLVVFDDVTCFN 273 (553)
Q Consensus 248 --~~~~~l~~~L---~~kr~LlVLDdv~~~~ 273 (553)
.....+.+++ +++.+||++|++....
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR~A 251 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFRFT 251 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHHHH
Confidence 1223355555 6799999999997654
No 205
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.86 E-value=0.035 Score=63.48 Aligned_cols=47 Identities=23% Similarity=0.381 Sum_probs=38.1
Q ss_pred CCccchhhhHhhHHhhccc-----------cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 163 DRLVGVESRVVAIESLLSA-----------APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~-----------~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
..++|.+..++.+.+.+.. ..++.++|+.|+|||.||+++++.+...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~ 623 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG 623 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 5689999999888877632 2368899999999999999999876443
No 206
>PRK00625 shikimate kinase; Provisional
Probab=95.85 E-value=0.0065 Score=55.49 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.6
Q ss_pred EEEEeecCCCchHHHHHHHHhhhc
Q 037613 184 LLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.|.++||+|+||||+++.++++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998764
No 207
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.85 E-value=0.018 Score=54.37 Aligned_cols=85 Identities=15% Similarity=0.215 Sum_probs=50.2
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccC--------CCCc------
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRD--------ESMI------ 247 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~--------~~~~------ 247 (553)
-..++|.|.+|+|||+|+..+.+...... .+++. + .+....+..+.+++...-..+ ..+.
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~~~d~--~V~~~-i---Ger~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~ 88 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQDADV--VVYAL-I---GERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYR 88 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHCTTTE--EEEEE-E---SECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhcccccc--eeeee-c---cccchhHHHHHHHHhhcccccccccccccchhhHHHHhh
Confidence 56899999999999999999998765332 24443 2 222134555666554331111 1111
Q ss_pred --ccHHHHHHHh--cCCCeEEEEcCCCCh
Q 037613 248 --PDIDLHFKRL--SRRKVLVVFDDVTCF 272 (553)
Q Consensus 248 --~~~~~l~~~L--~~kr~LlVLDdv~~~ 272 (553)
...-.+.+++ +++.+|+++||+...
T Consensus 89 ~~~~a~t~AEyfrd~G~dVlli~Dsltr~ 117 (215)
T PF00006_consen 89 APYTALTIAEYFRDQGKDVLLIIDSLTRW 117 (215)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEEETHHHH
T ss_pred hhccchhhhHHHhhcCCceeehhhhhHHH
Confidence 1111223333 589999999998544
No 208
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.84 E-value=0.0045 Score=60.72 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=20.5
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
+.|.|+|.+|+||||+|+.+...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 57899999999999999999986655
No 209
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=95.84 E-value=0.0079 Score=66.27 Aligned_cols=48 Identities=27% Similarity=0.497 Sum_probs=40.4
Q ss_pred CCCCCCccchhhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
|...+.++|++..+..+.+.+.. ...+.|+|++|+||||||+.+++..
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 45557799999999988877754 6679999999999999999998754
No 210
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.84 E-value=0.021 Score=55.97 Aligned_cols=98 Identities=13% Similarity=0.135 Sum_probs=60.8
Q ss_pred hHhhHHhhccc-cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhc-cCCCCcc
Q 037613 171 RVVAIESLLSA-APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLF-RDESMIP 248 (553)
Q Consensus 171 ~~~~l~~~L~~-~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~-~~~~~~~ 248 (553)
.++.+..++.. ..++.|.|..|.||||++.++.+.+...-...+.+.+..+... .+. .++. .......
T Consensus 68 ~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~--~~~--------~q~~v~~~~~~~ 137 (264)
T cd01129 68 NLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI--PGI--------NQVQVNEKAGLT 137 (264)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC--CCc--------eEEEeCCcCCcC
Confidence 34445555544 6789999999999999999988766442223344443322211 111 0111 1111224
Q ss_pred cHHHHHHHhcCCCeEEEEcCCCChHhHHHh
Q 037613 249 DIDLHFKRLSRRKVLVVFDDVTCFNQIESF 278 (553)
Q Consensus 249 ~~~~l~~~L~~kr~LlVLDdv~~~~~l~~l 278 (553)
....++..|+..+=.|+++++.+.+....+
T Consensus 138 ~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~ 167 (264)
T cd01129 138 FARGLRAILRQDPDIIMVGEIRDAETAEIA 167 (264)
T ss_pred HHHHHHHHhccCCCEEEeccCCCHHHHHHH
Confidence 567788888889999999999988765543
No 211
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.84 E-value=0.0074 Score=58.00 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=24.6
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
..+++|.|+.|+|||||++.+...+...
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 5699999999999999999999866554
No 212
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.80 E-value=0.0079 Score=54.83 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=23.2
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
...|.++|++|+||||+|+.++++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999999863
No 213
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.77 E-value=0.0094 Score=55.76 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=25.1
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
+.+|||.|.+|+||||+|+.+++.+...
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 3589999999999999999999988765
No 214
>PRK06547 hypothetical protein; Provisional
Probab=95.75 E-value=0.011 Score=53.94 Aligned_cols=25 Identities=36% Similarity=0.319 Sum_probs=22.7
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..+|+|.|++|+||||+|+.+++..
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999999864
No 215
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.75 E-value=0.0053 Score=52.36 Aligned_cols=28 Identities=32% Similarity=0.560 Sum_probs=20.4
Q ss_pred EEEeecCCCchHHHHHHHHhhhcCCCCc
Q 037613 185 LAIWGIGGIGKTTIARATFDKISSDFEG 212 (553)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~~~~~~F~~ 212 (553)
|.|+|.+|+||||+|+.++..+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 6799999999999999999988877754
No 216
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.0082 Score=64.56 Aligned_cols=48 Identities=25% Similarity=0.432 Sum_probs=41.8
Q ss_pred CCccchhhhHhhHHhhccc--------cCEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 163 DRLVGVESRVVAIESLLSA--------APLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~--------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
+...|+++-.++|.+++.- .+++..+|++|||||.+|+.++..+...|
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 4678999999999988754 68999999999999999999999776665
No 217
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.73 E-value=0.03 Score=58.88 Aligned_cols=88 Identities=22% Similarity=0.185 Sum_probs=54.2
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC-CCceEEEEechhhhcccCCHHHHHHHHHHhhccC-------C-CCc-----
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD-FEGSCFLENVREESQRLGGLACLRQKLLSNLFRD-------E-SMI----- 247 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~-------~-~~~----- 247 (553)
-..++|.|.+|+|||||+..+++....+ -+.++++ -+++-. ..+..+...+...-... . .+.
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~-liGER~---rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~ 218 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFA-GVGERS---REGHELYHEMKESGVLDKTVMVYGQMNEPPGARM 218 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEE-cCCcch---HHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHH
Confidence 6789999999999999999998866543 3444444 343322 33555666555432111 0 110
Q ss_pred ---ccHHHHHHHh---cCCCeEEEEcCCCChH
Q 037613 248 ---PDIDLHFKRL---SRRKVLVVFDDVTCFN 273 (553)
Q Consensus 248 ---~~~~~l~~~L---~~kr~LlVLDdv~~~~ 273 (553)
.....+.+++ .++.+||++|++....
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLl~~DslTR~A 250 (461)
T PRK12597 219 RVVLTGLTIAEYLRDEEKEDVLLFIDNIFRFV 250 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeccchHHH
Confidence 1223445555 3789999999997654
No 218
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.73 E-value=0.045 Score=57.28 Aligned_cols=88 Identities=16% Similarity=0.166 Sum_probs=53.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc-CCCCceEEEEechhhhcccCCHHHHHHHHHHhhccC--------CCCc-----
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS-SDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRD--------ESMI----- 247 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~--------~~~~----- 247 (553)
-..++|.|.+|+|||+|+..+..... .+-+.++|.- +++-. .....+.+.+...-... ..+.
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~~-iGeR~---rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~ 213 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCG-IGERC---REGEELYREMKEAGVLDNTVMVFGQMNEPPGARF 213 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEE-eccCc---HHHHHHHHHHhhccccceEEEEEeCCCCCHHHHH
Confidence 57899999999999999999887654 2234555553 43322 33555666555431111 0110
Q ss_pred ---ccHHHHHHHhc---CCCeEEEEcCCCChH
Q 037613 248 ---PDIDLHFKRLS---RRKVLVVFDDVTCFN 273 (553)
Q Consensus 248 ---~~~~~l~~~L~---~kr~LlVLDdv~~~~ 273 (553)
.....+.++++ ++.+||++||+....
T Consensus 214 ~~~~~a~tiAEyfrd~~G~~VLl~~DslTR~A 245 (449)
T TIGR03305 214 RVGHTALTMAEYFRDDEKQDVLLLIDNIFRFI 245 (449)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecChHHHH
Confidence 12334455554 589999999997654
No 219
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.72 E-value=0.042 Score=59.89 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=41.1
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
|.....++|.+..++.+...+.. ...+.++|+.|+||||+|+.+++.+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal 62 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAV 62 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44557899999999999998876 6677889999999999999999864
No 220
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.72 E-value=0.0054 Score=51.23 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=21.7
Q ss_pred EEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 185 LAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
|-|+|.+|+|||+||..++..+..++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999988665443
No 221
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.71 E-value=0.0077 Score=56.87 Aligned_cols=26 Identities=35% Similarity=0.613 Sum_probs=22.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+|+|+|++|+||||||+.++....
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35899999999999999999997654
No 222
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.054 Score=51.61 Aligned_cols=49 Identities=22% Similarity=0.480 Sum_probs=36.6
Q ss_pred CccchhhhHhhHHhhccc---------------cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 164 RLVGVESRVVAIESLLSA---------------APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~---------------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..=|=.++++++.+.... ++-|.++|++|.|||-+|++|+++.. .+|+.
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd-----acfir 241 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD-----ACFIR 241 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC-----ceEEe
Confidence 445667777777664432 56788999999999999999999743 36665
No 223
>PRK13947 shikimate kinase; Provisional
Probab=95.67 E-value=0.0082 Score=54.68 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=22.8
Q ss_pred EEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 184 LLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
.|.|+|++|+||||+|+.+++++.-.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 48899999999999999999986543
No 224
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.67 E-value=0.035 Score=58.09 Aligned_cols=89 Identities=17% Similarity=0.222 Sum_probs=55.2
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccC--------CCCc------
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRD--------ESMI------ 247 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~--------~~~~------ 247 (553)
-..++|.|..|+|||||+..++.....+...++.+..+++-. ..+..+..++...-... ..+.
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~---rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERT---REGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCCc---hHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 678999999999999999999886654444444444444322 33556666664321111 0010
Q ss_pred --ccHHHHHHHh---cCCCeEEEEcCCCChH
Q 037613 248 --PDIDLHFKRL---SRRKVLVVFDDVTCFN 273 (553)
Q Consensus 248 --~~~~~l~~~L---~~kr~LlVLDdv~~~~ 273 (553)
.....+.+++ +++.+||++||+....
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR~A 250 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFRFT 250 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhHHH
Confidence 1223445555 4689999999997654
No 225
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.65 E-value=0.015 Score=56.56 Aligned_cols=25 Identities=32% Similarity=0.623 Sum_probs=21.9
Q ss_pred EEEEeecCCCchHHHHHHHHhhhcC
Q 037613 184 LLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
.|.++|++|+||||+|+++++....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999987654
No 226
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.62 E-value=0.055 Score=55.73 Aligned_cols=81 Identities=14% Similarity=0.219 Sum_probs=47.5
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccCCCCc-----ccHHHHHHH
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRDESMI-----PDIDLHFKR 256 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~-----~~~~~l~~~ 256 (553)
..++.|.|.+|+|||||+.+++......-..++|+.. . .....+... ...++...... ...+.+.+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~-E------Es~~qi~~R-a~rlg~~~~~l~l~~e~~le~I~~~ 153 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSG-E------ESPEQIKLR-ADRLGISTENLYLLAETNLEDILAS 153 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEC-C------cCHHHHHHH-HHHcCCCcccEEEEccCcHHHHHHH
Confidence 6789999999999999999999876655445566651 1 122222221 22232221111 223344444
Q ss_pred hc-CCCeEEEEcCCC
Q 037613 257 LS-RRKVLVVFDDVT 270 (553)
Q Consensus 257 L~-~kr~LlVLDdv~ 270 (553)
+. .+.-+||+|.+.
T Consensus 154 i~~~~~~lVVIDSIq 168 (372)
T cd01121 154 IEELKPDLVIIDSIQ 168 (372)
T ss_pred HHhcCCcEEEEcchH
Confidence 43 466789999874
No 227
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.60 E-value=0.049 Score=50.46 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=23.1
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
...+.++|+.|+||||+|+.+.+.+.
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHc
Confidence 46789999999999999999998764
No 228
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.60 E-value=0.034 Score=56.95 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=24.7
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
..+++++|+.|+||||++.+++.+....+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~ 165 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRF 165 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 57999999999999999999998754443
No 229
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.60 E-value=0.074 Score=53.61 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=24.4
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
..+++++|++|+||||++..++..+...
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 5699999999999999999999866544
No 230
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.60 E-value=0.015 Score=63.73 Aligned_cols=78 Identities=15% Similarity=0.165 Sum_probs=58.3
Q ss_pred CCCCCCccchhhhHhhHHhhccccCEEEEeecCCCchHHHHHHHHhhhcC-CCCceEEEEechhhhcccCCHHHHHHHHH
Q 037613 159 PHNNDRLVGVESRVVAIESLLSAAPLLAIWGIGGIGKTTIARATFDKISS-DFEGSCFLENVREESQRLGGLACLRQKLL 237 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~s~~~~~~~~l~~~ll 237 (553)
|...+.++|.++.++.+...+...+.+.++|.+|+||||+|+.+++.+.. .++...|+.|.. .....+.+.+.
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~~~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~np~------~~~~~~~~~v~ 100 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQRRHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPNPE------DPNNPKIRTVP 100 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeCCC------cchHHHHHHHH
Confidence 44556789999999888887777778999999999999999999987643 357778887521 44556666666
Q ss_pred Hhhcc
Q 037613 238 SNLFR 242 (553)
Q Consensus 238 ~~l~~ 242 (553)
...+.
T Consensus 101 ~~~G~ 105 (637)
T PRK13765 101 AGKGK 105 (637)
T ss_pred HhcCH
Confidence 54443
No 231
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.58 E-value=0.052 Score=61.77 Aligned_cols=48 Identities=23% Similarity=0.461 Sum_probs=39.0
Q ss_pred CCccchhhhHhhHHhhccc--------cCEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 163 DRLVGVESRVVAIESLLSA--------APLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~--------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
...+|.+...+.|..++.. .+++.++|++|+|||++|+.+++.+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 3578988888888876542 45799999999999999999999876554
No 232
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.56 E-value=0.71 Score=50.96 Aligned_cols=48 Identities=27% Similarity=0.376 Sum_probs=40.9
Q ss_pred CCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 160 HNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 160 ~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
...+.++|.+..++.+...+.. ...+.++|+.|+||||+|+.++..+.
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4456799999999999998876 56789999999999999999988653
No 233
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.56 E-value=0.037 Score=62.75 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=37.1
Q ss_pred CCccchhhhHhhHHhhccc---------------cCEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 163 DRLVGVESRVVAIESLLSA---------------APLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~---------------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
..+.|.+...+.|.+.+.. .+-+.++|++|+|||+||+++++.....|
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f 515 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF 515 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 4577888877777665431 45689999999999999999999765443
No 234
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.54 E-value=0.046 Score=52.34 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.9
Q ss_pred EEEEeecCCCchHHHHHHHHhhh
Q 037613 184 LLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.|.|.|++|+||||+|+.++++.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999865
No 235
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.52 E-value=0.014 Score=53.66 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=22.1
Q ss_pred EEEEeecCCCchHHHHHHHHhhhcC
Q 037613 184 LLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
+|+|.|.+|+||||||+.+...+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987643
No 236
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.52 E-value=0.017 Score=59.41 Aligned_cols=58 Identities=19% Similarity=0.198 Sum_probs=32.7
Q ss_pred CCcEEEeecccCCCCCCCccccCCCCCCCCeeEEEecCC-CCCCCCCCCCCCCccEEEcCCC---CcccCCCCC
Q 037613 482 KLRFLKFYNSINGDNRCKVSYLQESPGFAEVRFLHRHGY-PLKSLPSNINQKKLVVIEMPHS---NIQQFWDGT 551 (553)
Q Consensus 482 ~LrvL~l~~~~~~~~~~~l~~lp~~i~L~~Lr~L~l~~~-~l~~LP~~i~L~~L~~L~l~~s---~i~~lp~~~ 551 (553)
+|+.|.+.+|. .+..+|+.+ ..+|++|++.+| .+.+||++ |++|++.++ .+..||.++
T Consensus 73 sLtsL~Lsnc~------nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~s-----Le~L~L~~n~~~~L~~LPssL 134 (426)
T PRK15386 73 ELTEITIENCN------NLTTLPGSI-PEGLEKLTVCHCPEISGLPES-----VRSLEIKGSATDSIKNVPNGL 134 (426)
T ss_pred CCcEEEccCCC------CcccCCchh-hhhhhheEccCcccccccccc-----cceEEeCCCCCcccccCcchH
Confidence 46777776654 333444322 256777777777 56666654 444455443 356676654
No 237
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.51 E-value=0.015 Score=59.47 Aligned_cols=52 Identities=31% Similarity=0.314 Sum_probs=44.4
Q ss_pred CCCCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 157 LFPHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 157 ~~~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
..|.....++|-++..+.+...+.. +..+.|+|+.|+||||+|..+++.+-.
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 3566777899999999999998877 557999999999999999999986544
No 238
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.50 E-value=0.013 Score=53.81 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=22.4
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhc
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
++|.+.|++|+||||+|+++.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988653
No 239
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=95.50 E-value=0.0016 Score=67.98 Aligned_cols=61 Identities=21% Similarity=0.340 Sum_probs=40.2
Q ss_pred CCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCcccCCC
Q 037613 482 KLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSLPSNI-NQKKLVVIEMPHSNIQQFWD 549 (553)
Q Consensus 482 ~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~~s~i~~lp~ 549 (553)
-|+||.++|+ ++..+|+.|| +.+|.-|+.+.|.+.+||+.+ .|..|+.|+++.+++..||.
T Consensus 144 pLkvli~sNN-------kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~ 206 (722)
T KOG0532|consen 144 PLKVLIVSNN-------KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPE 206 (722)
T ss_pred cceeEEEecC-------ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCH
Confidence 3677777776 5666777666 666666676666666666666 56666666666666665554
No 240
>CHL00181 cbbX CbbX; Provisional
Probab=95.49 E-value=0.02 Score=56.95 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.6
Q ss_pred EEEEeecCCCchHHHHHHHHhhh
Q 037613 184 LLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.+.++|++|+||||+|+.+++..
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999998854
No 241
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.49 E-value=0.042 Score=52.98 Aligned_cols=87 Identities=18% Similarity=0.152 Sum_probs=51.2
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcc-cCCHHHHHHHHHHhhccCCCC-------c---cc-
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQR-LGGLACLRQKLLSNLFRDESM-------I---PD- 249 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~-~~~~~~l~~~ll~~l~~~~~~-------~---~~- 249 (553)
..++||+|..|+||||+++.+..-..... +.+++..- ..... .........+++..++..... . +.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt~-G~i~f~g~-~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPTS-GEILFEGK-DITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCCC-ceEEEcCc-chhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 67999999999999999999998544332 23333211 01000 022334445555555432111 1 12
Q ss_pred HHHHHHHhcCCCeEEEEcCCC
Q 037613 250 IDLHFKRLSRRKVLVVFDDVT 270 (553)
Q Consensus 250 ~~~l~~~L~~kr~LlVLDdv~ 270 (553)
.-.+.+.|.-++-++|.|...
T Consensus 117 Ri~IARALal~P~liV~DEpv 137 (268)
T COG4608 117 RIGIARALALNPKLIVADEPV 137 (268)
T ss_pred hHHHHHHHhhCCcEEEecCch
Confidence 224567788899999999764
No 242
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.48 E-value=0.038 Score=53.89 Aligned_cols=88 Identities=11% Similarity=0.107 Sum_probs=53.1
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc----CCCCceEEEEechhhhcccCCHHHHHHHHHHhhccC--------CCCc--
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS----SDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRD--------ESMI-- 247 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~----~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~--------~~~~-- 247 (553)
-..++|.|-.|+|||+|+..++++.. .+-+.++++- +++-. .....+..++...-... ..+.
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~-IGeR~---rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~ 144 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAA-MGITM---EDARFFKDDFEETGALERVVLFLNLANDPTI 144 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEE-ecccc---HHHHHHHHHhhhcCCcceEEEEEecCCCCHH
Confidence 56899999999999999999987643 2234445543 43322 34566666665431111 0010
Q ss_pred ------ccHHHHHHHhc---CCCeEEEEcCCCChH
Q 037613 248 ------PDIDLHFKRLS---RRKVLVVFDDVTCFN 273 (553)
Q Consensus 248 ------~~~~~l~~~L~---~kr~LlVLDdv~~~~ 273 (553)
.....+.++++ ++++|+++||+....
T Consensus 145 ~r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A 179 (276)
T cd01135 145 ERIITPRMALTTAEYLAYEKGKHVLVILTDMTNYA 179 (276)
T ss_pred HHHHHHHHHHHHHHHHHhccCCeEEEEEcChhHHH
Confidence 11233445543 688999999997654
No 243
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.47 E-value=0.011 Score=54.58 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=22.5
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.++|.|.|++|+||||+|+.+++..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999764
No 244
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.46 E-value=0.012 Score=64.41 Aligned_cols=49 Identities=24% Similarity=0.303 Sum_probs=41.1
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
|.....++|.+..++.+...+.. ...+.++|+.|+||||+|+.+++.+.
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 34457899999999999998866 56688999999999999999998653
No 245
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.45 E-value=0.0088 Score=57.83 Aligned_cols=69 Identities=14% Similarity=0.208 Sum_probs=56.0
Q ss_pred hhHhhcCCCCcEEEeecccCCCCCCCccccCCCCCCCCeeEEEecCCC--CCCCCCCC-CCCCccEEEcCCCCcccC
Q 037613 474 PNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPGFAEVRFLHRHGYP--LKSLPSNI-NQKKLVVIEMPHSNIQQF 547 (553)
Q Consensus 474 ~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~L~~Lr~L~l~~~~--l~~LP~~i-~L~~L~~L~l~~s~i~~l 547 (553)
...+.+|+.|++|.|+.+.+.. .|+.+| .-+++||.|-|.|+. .+.+-++. .|+.++.|.|+.++++++
T Consensus 90 ~~ile~lP~l~~LNls~N~L~s---~I~~lp--~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~ 161 (418)
T KOG2982|consen 90 GAILEQLPALTTLNLSCNSLSS---DIKSLP--LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQL 161 (418)
T ss_pred HHHHhcCccceEeeccCCcCCC---ccccCc--ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhh
Confidence 3457899999999999998888 888888 458999999999984 55566666 688888888888876655
No 246
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.45 E-value=0.032 Score=59.44 Aligned_cols=90 Identities=19% Similarity=0.160 Sum_probs=53.0
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCC-CceEEEEechhhhcccCCHHHHHHHHHHhhccCCCCc---------ccHH
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDF-EGSCFLENVREESQRLGGLACLRQKLLSNLFRDESMI---------PDID 251 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~---------~~~~ 251 (553)
-...+|+|.+|+|||||++.+++.+.... ++.+++.-+.+-.. .+..+.+.+-..+.....+. ...-
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpe---EVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai 492 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPE---EVTDMQRSVKGEVIASTFDRPPSDHTTVAELAI 492 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchh---hHHHHHHhccceEEEECCCCCHHHHHHHHHHHH
Confidence 56889999999999999999999775433 34445554443322 23333333311111111111 1222
Q ss_pred HHHHHh--cCCCeEEEEcCCCChHh
Q 037613 252 LHFKRL--SRRKVLVVFDDVTCFNQ 274 (553)
Q Consensus 252 ~l~~~L--~~kr~LlVLDdv~~~~~ 274 (553)
.+.+++ .++.+||++|++.....
T Consensus 493 ~~Ae~fre~G~dVlillDSlTR~Ar 517 (672)
T PRK12678 493 ERAKRLVELGKDVVVLLDSITRLGR 517 (672)
T ss_pred HHHHHHHHcCCCEEEEEeCchHHHH
Confidence 334444 57899999999976544
No 247
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.44 E-value=0.018 Score=61.35 Aligned_cols=48 Identities=21% Similarity=0.189 Sum_probs=35.0
Q ss_pred CCCccchhhhHhhHHhhc---c---------ccCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 162 NDRLVGVESRVVAIESLL---S---------AAPLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L---~---------~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
..++.|.+...+.+.+.. . ..+-|.++|++|+|||.+|+++++...-.
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~ 286 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP 286 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 346778876666555421 1 15678999999999999999999975433
No 248
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.43 E-value=0.084 Score=55.05 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=23.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
..+|.++|..|+||||+|..++..++.+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 5699999999999999999998765443
No 249
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.43 E-value=0.053 Score=54.47 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=29.4
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
.+++-|+|++|+||||||.+++......-..++|++
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 678999999999999999998876555545667776
No 250
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.43 E-value=0.033 Score=57.94 Aligned_cols=86 Identities=13% Similarity=0.151 Sum_probs=50.6
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccC--------CCCc------
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRD--------ESMI------ 247 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~--------~~~~------ 247 (553)
...++|.|..|+|||||++.++..... +..++. .+++-. ..+..+...++..-... ..+.
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~~~--dv~Vi~-lIGER~---rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGTTA--DVIVVG-LVGERG---REVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCCCC--CEEEEE-EEcCCh---HHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 678999999999999999999875333 344443 333322 23444555543321111 0010
Q ss_pred --ccHHHHHHHh--cCCCeEEEEcCCCChH
Q 037613 248 --PDIDLHFKRL--SRRKVLVVFDDVTCFN 273 (553)
Q Consensus 248 --~~~~~l~~~L--~~kr~LlVLDdv~~~~ 273 (553)
.....+.+++ +++.+||++||+....
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR~A 265 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTRYA 265 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHHHH
Confidence 1122344444 5899999999997654
No 251
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.42 E-value=0.01 Score=55.63 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=21.1
Q ss_pred EEEEeecCCCchHHHHHHHHhhh
Q 037613 184 LLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
+|+|.|.+|+||||||+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 252
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.40 E-value=0.056 Score=52.78 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=24.8
Q ss_pred hHHhhccc----cCEEEEeecCCCchHHHHHHHHh
Q 037613 174 AIESLLSA----APLLAIWGIGGIGKTTIARATFD 204 (553)
Q Consensus 174 ~l~~~L~~----~~vi~I~G~gGiGKTtLA~~v~~ 204 (553)
.|.++|.. ..+.=|+|.+|+|||+||..++-
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~ 60 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAV 60 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHH
Confidence 44455544 67899999999999999988774
No 253
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.40 E-value=0.011 Score=54.61 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=21.0
Q ss_pred EEEEeecCCCchHHHHHHHHhhh
Q 037613 184 LLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
+|.|+|++|+||||+|+.++++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999865
No 254
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.40 E-value=0.063 Score=53.29 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=23.3
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
.++++++|++|+||||++..++.....
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 469999999999999999999886543
No 255
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.39 E-value=0.013 Score=63.95 Aligned_cols=49 Identities=31% Similarity=0.497 Sum_probs=42.1
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
|.....++|.+..++.|...+.. ...+.++|+.|+||||+|+.+++.+.
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhC
Confidence 34557899999999999998876 56789999999999999999998654
No 256
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.38 E-value=0.012 Score=51.95 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.6
Q ss_pred EEEEeecCCCchHHHHHHHHhhhc
Q 037613 184 LLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
+|.|.|+.|+||||+|+.++.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998753
No 257
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.37 E-value=0.018 Score=56.57 Aligned_cols=35 Identities=26% Similarity=0.228 Sum_probs=26.2
Q ss_pred hhHHhhccccCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 173 VAIESLLSAAPLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 173 ~~l~~~L~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
+++...+....-|.+.|++|+|||+||+++++...
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 33444444456678999999999999999998553
No 258
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.37 E-value=0.027 Score=56.33 Aligned_cols=51 Identities=14% Similarity=0.078 Sum_probs=37.8
Q ss_pred CCCCCccchhhhHhhHHhhccccCEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 160 HNNDRLVGVESRVVAIESLLSAAPLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 160 ~~~~~~vGr~~~~~~l~~~L~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
...+.++=..+....+...+...+.|.|.|.+|+||||+|+.++..+...|
T Consensus 42 ~~d~~y~f~~~~~~~vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 42 DIDPAYLFDKATTKAICAGFAYDRRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 333445544455666777666577899999999999999999999776544
No 259
>PRK10536 hypothetical protein; Provisional
Probab=95.34 E-value=0.031 Score=53.86 Aligned_cols=54 Identities=17% Similarity=0.195 Sum_probs=41.6
Q ss_pred CCCccchhhhHhhHHhhccccCEEEEeecCCCchHHHHHHHHhh-h-cCCCCceEE
Q 037613 162 NDRLVGVESRVVAIESLLSAAPLLAIWGIGGIGKTTIARATFDK-I-SSDFEGSCF 215 (553)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~~vi~I~G~gGiGKTtLA~~v~~~-~-~~~F~~~~~ 215 (553)
...+.++......+...+.....+.+.|++|+|||+||.+++.+ + ...|...+.
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred CccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 34567788888888888877779999999999999999998873 4 344554443
No 260
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.33 E-value=0.024 Score=56.29 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=31.3
Q ss_pred CccchhhhHhhHHhhccc-----------------cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 164 RLVGVESRVVAIESLLSA-----------------APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~-----------------~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.++|.++..++|.++... ..-+.++|++|+||||+|+.+++.+.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~ 83 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILH 83 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 367777666665553221 12578999999999999998887554
No 261
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.33 E-value=0.089 Score=59.58 Aligned_cols=48 Identities=23% Similarity=0.402 Sum_probs=40.4
Q ss_pred CCccchhhhHhhHHhhccc--------cCEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 163 DRLVGVESRVVAIESLLSA--------APLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~--------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
...+|.+.-.++|..+|.. ..++.++|++|+||||+|+.++......|
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~ 377 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKY 377 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4689999999999887763 56899999999999999999998765544
No 262
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.32 E-value=0.043 Score=56.11 Aligned_cols=97 Identities=14% Similarity=0.146 Sum_probs=58.4
Q ss_pred HHhhccc-cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE-echhhhcccCCHHHHHHHHHHhhccCCCCcccHHH
Q 037613 175 IESLLSA-APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE-NVREESQRLGGLACLRQKLLSNLFRDESMIPDIDL 252 (553)
Q Consensus 175 l~~~L~~-~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~-~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~ 252 (553)
+.+++.. ...+.|.|+.|+||||+...+.+.+.......++.. +..+... .+.. .+..+.............
T Consensus 114 l~~~~~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~--~~~~----~~i~q~evg~~~~~~~~~ 187 (343)
T TIGR01420 114 LRELAERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVH--RNKR----SLINQREVGLDTLSFANA 187 (343)
T ss_pred HHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhc--cCcc----ceEEccccCCCCcCHHHH
Confidence 3344433 678999999999999999999987765555555543 1111100 0000 000000000111245667
Q ss_pred HHHHhcCCCeEEEEcCCCChHhHHH
Q 037613 253 HFKRLSRRKVLVVFDDVTCFNQIES 277 (553)
Q Consensus 253 l~~~L~~kr~LlVLDdv~~~~~l~~ 277 (553)
++..|+..+=.|++|.+.+.+....
T Consensus 188 l~~~lr~~pd~i~vgEird~~~~~~ 212 (343)
T TIGR01420 188 LRAALREDPDVILIGEMRDLETVEL 212 (343)
T ss_pred HHHhhccCCCEEEEeCCCCHHHHHH
Confidence 8888999999999999988776654
No 263
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.32 E-value=0.012 Score=54.45 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=21.2
Q ss_pred EEEEeecCCCchHHHHHHHHhhh
Q 037613 184 LLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
+|+|.|.+|+||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 264
>PRK10867 signal recognition particle protein; Provisional
Probab=95.32 E-value=0.25 Score=51.81 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=23.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
+.+|.++|.+|+||||.|..++..+...
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 5689999999999999998888766554
No 265
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.27 E-value=0.17 Score=53.13 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=26.4
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc--CCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS--SDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~--~~F~~~~~~~ 217 (553)
.+++.++|++|+||||++..++.... ..-..+.+++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 45899999999999999999887654 3223344444
No 266
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.27 E-value=0.012 Score=56.14 Aligned_cols=24 Identities=33% Similarity=0.428 Sum_probs=21.8
Q ss_pred EEEEeecCCCchHHHHHHHHhhhc
Q 037613 184 LLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
+|||.|..|+||||+|+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998764
No 267
>PRK06217 hypothetical protein; Validated
Probab=95.26 E-value=0.013 Score=54.13 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.6
Q ss_pred EEEEeecCCCchHHHHHHHHhhhc
Q 037613 184 LLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.|.|.|++|+||||+|+++.+...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998753
No 268
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.26 E-value=0.014 Score=53.95 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=23.6
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+|+|-||=|+||||||+.++++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 36899999999999999999999866
No 269
>PRK13949 shikimate kinase; Provisional
Probab=95.26 E-value=0.016 Score=52.84 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.3
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhc
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
+.|.|+|+.|+||||+++.+++...
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998764
No 270
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.25 E-value=0.079 Score=47.12 Aligned_cols=24 Identities=42% Similarity=0.596 Sum_probs=21.4
Q ss_pred EEEEeecCCCchHHHHHHHHhhhc
Q 037613 184 LLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
+|.|+|.+|+||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998764
No 271
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.25 E-value=0.026 Score=49.57 Aligned_cols=35 Identities=20% Similarity=0.407 Sum_probs=26.7
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcC-CCCceEEEE
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISS-DFEGSCFLE 217 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~ 217 (553)
++|.|+|..|+|||||++.+.+.+.. .+...++..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 58999999999999999999997764 455555554
No 272
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.24 E-value=0.022 Score=63.83 Aligned_cols=13 Identities=15% Similarity=0.015 Sum_probs=9.0
Q ss_pred CCCCcEEEeeccc
Q 037613 480 MHKLRFLKFYNSI 492 (553)
Q Consensus 480 ~~~LrvL~l~~~~ 492 (553)
+++|+.|+|++|.
T Consensus 301 p~~L~~LdLS~N~ 313 (788)
T PRK15387 301 PPGLQELSVSDNQ 313 (788)
T ss_pred ccccceeECCCCc
Confidence 3567788887763
No 273
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.24 E-value=0.015 Score=51.88 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=20.8
Q ss_pred EEEeecCCCchHHHHHHHHhhhc
Q 037613 185 LAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
|.|+|++|+||||+|+.++....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998763
No 274
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.23 E-value=0.022 Score=49.32 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=22.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..+|.+.|.-|+||||+++.+++.+
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 5799999999999999999999854
No 275
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.23 E-value=0.041 Score=55.18 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=29.0
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
.+++-|+|++|+||||||.+++......=..++|++
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 679999999999999999998876555445566775
No 276
>PRK13946 shikimate kinase; Provisional
Probab=95.20 E-value=0.017 Score=53.47 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=23.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
.+.|.++|+.|+||||+|+.+++++.-
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~ 36 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGL 36 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 467999999999999999999998743
No 277
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=95.20 E-value=0.014 Score=61.48 Aligned_cols=81 Identities=12% Similarity=0.156 Sum_probs=59.7
Q ss_pred ccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCCCCCC-C-CCCccEEE
Q 037613 462 LDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSLPSNI-N-QKKLVVIE 538 (553)
Q Consensus 462 l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~LP~~i-~-L~~L~~L~ 538 (553)
|+.+.+.--++...+|.++.+|+.+.+.++ .+..+|..++ ..||..|+|+++-|.++-+.- . +.-|++||
T Consensus 83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-------~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-------ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred eeccccccccCcHHHHhcCCcceeeeeccc-------hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 555655556778888999999999999988 5666887666 677888888777777666543 3 77777777
Q ss_pred cCCCCcccCCC
Q 037613 539 MPHSNIQQFWD 549 (553)
Q Consensus 539 l~~s~i~~lp~ 549 (553)
|+.+.|.++|+
T Consensus 156 LSrN~is~i~~ 166 (873)
T KOG4194|consen 156 LSRNLISEIPK 166 (873)
T ss_pred hhhchhhcccC
Confidence 77777777665
No 278
>PRK13948 shikimate kinase; Provisional
Probab=95.19 E-value=0.017 Score=53.19 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=24.0
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
.+.|.++||.|+||||+++.++++...
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRALML 36 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 578999999999999999999987643
No 279
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.019 Score=54.13 Aligned_cols=47 Identities=21% Similarity=0.384 Sum_probs=36.3
Q ss_pred CccchhhhHhhHHhhccc---------------cCEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 164 RLVGVESRVVAIESLLSA---------------APLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~---------------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
..=|.+-..+++.+...- ++-|.++|++|+|||.||++|++.....|
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 455777777777665432 67889999999999999999999766554
No 280
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.18 E-value=0.15 Score=45.68 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=19.7
Q ss_pred CEEEEeecCCCchHHHHHHHHh
Q 037613 183 PLLAIWGIGGIGKTTIARATFD 204 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (553)
..|+++|++|+|||||...+..
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhc
Confidence 4678999999999999999876
No 281
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.17 E-value=0.077 Score=53.65 Aligned_cols=44 Identities=27% Similarity=0.253 Sum_probs=33.4
Q ss_pred ccchhhhHhhHHhhccc----cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 165 LVGVESRVVAIESLLSA----APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 165 ~vGr~~~~~~l~~~L~~----~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
++|-+....++..+... ...+.++|+.|+||||+|.++++.+..
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~ 50 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLC 50 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhC
Confidence 45566666666666553 446999999999999999999987653
No 282
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.16 E-value=0.022 Score=52.11 Aligned_cols=27 Identities=41% Similarity=0.521 Sum_probs=23.5
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
..+|+|+|++|+||||+|+.++.....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 358999999999999999999987643
No 283
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.15 E-value=0.02 Score=52.09 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=23.2
Q ss_pred EEEeecCCCchHHHHHHHHhhhcC-CCCceEE
Q 037613 185 LAIWGIGGIGKTTIARATFDKISS-DFEGSCF 215 (553)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~ 215 (553)
|.|+|.+|+|||||.+.+++.++. .+...-|
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf 33 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLPVGGF 33 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGGEEEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCccceE
Confidence 689999999999999999987754 2443333
No 284
>PRK09354 recA recombinase A; Provisional
Probab=95.14 E-value=0.082 Score=53.59 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=29.5
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
.+++-|+|++|+||||||.+++......=..++|++
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 678999999999999999998876555545667776
No 285
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.13 E-value=0.11 Score=55.37 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=24.0
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
..+++|+|.+|+||||++..++.....+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 6799999999999999999988765443
No 286
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.10 E-value=0.015 Score=51.63 Aligned_cols=23 Identities=26% Similarity=0.722 Sum_probs=20.4
Q ss_pred EEEEeecCCCchHHHHHHHHhhh
Q 037613 184 LLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
++.++|++|+||||+|+.+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998863
No 287
>PRK14974 cell division protein FtsY; Provisional
Probab=95.10 E-value=0.47 Score=48.09 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=23.7
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
..+|+++|++|+||||++..++..+...
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 5799999999999999988888765543
No 288
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.09 E-value=0.017 Score=50.67 Aligned_cols=26 Identities=23% Similarity=0.599 Sum_probs=22.1
Q ss_pred EEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 184 LLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
.|+|+|+.|+|||||++.+.+.....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 37899999999999999999865444
No 289
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.09 E-value=0.017 Score=53.05 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=22.0
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhc
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.++.|+|+.|+|||||++.++....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988653
No 290
>PRK09087 hypothetical protein; Validated
Probab=95.09 E-value=0.031 Score=53.51 Aligned_cols=25 Identities=32% Similarity=0.411 Sum_probs=22.1
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.+.+.|||+.|+|||+|++.+++..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc
Confidence 5679999999999999999988753
No 291
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.08 E-value=0.026 Score=52.10 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=30.6
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
.+++.|+|+.|+|||||++.+..+....|...+..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeec
Confidence 378999999999999999999999888886555554
No 292
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.026 Score=54.45 Aligned_cols=48 Identities=27% Similarity=0.447 Sum_probs=39.3
Q ss_pred CCccchhhhHhhHHhhccc---------------cCEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 163 DRLVGVESRVVAIESLLSA---------------APLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~---------------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
.+.=|.+..+++|.+-..- +.-|.++|.+|.|||-||++|+|+.+.-|
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATF 247 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATF 247 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhh
Confidence 4566789999888886543 56788999999999999999999876655
No 293
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.06 E-value=0.32 Score=51.00 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=22.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
+.++.++|.+|+||||.|..++....
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 46899999999999999999888754
No 294
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.06 E-value=0.079 Score=48.32 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=22.7
Q ss_pred EEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 184 LLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
++.++|++|+||||++..++......
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 68899999999999999999876554
No 295
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.05 E-value=0.018 Score=50.87 Aligned_cols=25 Identities=36% Similarity=0.591 Sum_probs=22.2
Q ss_pred EEEEeecCCCchHHHHHHHHhhhcC
Q 037613 184 LLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
+|.|.|++|+||||+|+.+++...-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC
Confidence 6899999999999999999987543
No 296
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.04 E-value=0.084 Score=54.12 Aligned_cols=99 Identities=13% Similarity=0.056 Sum_probs=57.8
Q ss_pred HHhhccc-cCEEEEeecCCCchHHHHHHHHhhhcCCCCc---eEEEEechhhhcccCCHHHHHH--HHHHhhccCCCCcc
Q 037613 175 IESLLSA-APLLAIWGIGGIGKTTIARATFDKISSDFEG---SCFLENVREESQRLGGLACLRQ--KLLSNLFRDESMIP 248 (553)
Q Consensus 175 l~~~L~~-~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~---~~~~~~~~~~s~~~~~~~~l~~--~ll~~l~~~~~~~~ 248 (553)
+.+.+.. ...|.|+|+.|+||||++..+.+.+....+. .+.+.+.-+. ....+.. ....+.........
T Consensus 126 ~~~~~~~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~-----~~~~~~~~~~~v~Q~~v~~~~~~ 200 (358)
T TIGR02524 126 IIDAIAPQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEF-----VYDEIETISASVCQSEIPRHLNN 200 (358)
T ss_pred HHHHHhccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceE-----eccccccccceeeeeeccccccC
Confidence 3334433 6899999999999999999999877554432 2333222111 1111100 00001000011124
Q ss_pred cHHHHHHHhcCCCeEEEEcCCCChHhHHHh
Q 037613 249 DIDLHFKRLSRRKVLVVFDDVTCFNQIESF 278 (553)
Q Consensus 249 ~~~~l~~~L~~kr~LlVLDdv~~~~~l~~l 278 (553)
....++..|+..+-.+++..+.+.+..+..
T Consensus 201 ~~~~l~~aLR~~Pd~i~vGEiRd~et~~~a 230 (358)
T TIGR02524 201 FAAGVRNALRRKPHAILVGEARDAETISAA 230 (358)
T ss_pred HHHHHHHHhccCCCEEeeeeeCCHHHHHHH
Confidence 456778888999999999999888776544
No 297
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.04 E-value=0.013 Score=31.11 Aligned_cols=16 Identities=38% Similarity=0.484 Sum_probs=5.8
Q ss_pred CeeEEEecCCCCCCCC
Q 037613 511 EVRFLHRHGYPLKSLP 526 (553)
Q Consensus 511 ~Lr~L~l~~~~l~~LP 526 (553)
+||.|++++|++++||
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4444444444444444
No 298
>PRK08149 ATP synthase SpaL; Validated
Probab=95.04 E-value=0.067 Score=55.76 Aligned_cols=86 Identities=13% Similarity=0.187 Sum_probs=50.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccC--------CCCc------
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRD--------ESMI------ 247 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~--------~~~~------ 247 (553)
...++|+|..|+|||||+..++..... +..++.. + ......+..+..+.+...... ....
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~~--dv~v~g~-I---g~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSEA--DVFVIGL-I---GERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCCC--CeEEEEE-E---eeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 678999999999999999999874332 2222221 2 222244556666655532211 1110
Q ss_pred --ccHHHHHHHh--cCCCeEEEEcCCCChH
Q 037613 248 --PDIDLHFKRL--SRRKVLVVFDDVTCFN 273 (553)
Q Consensus 248 --~~~~~l~~~L--~~kr~LlVLDdv~~~~ 273 (553)
.....+.+++ +++.+||++||+....
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslTr~A 254 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMTRYA 254 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchHHHH
Confidence 1122333443 4899999999997654
No 299
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.04 E-value=0.06 Score=55.53 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=29.1
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFL 216 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 216 (553)
...+.|||..|.|||.|++++.+......+....+
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~ 147 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVV 147 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEE
Confidence 46799999999999999999999887777644333
No 300
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.02 E-value=0.091 Score=53.69 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=24.2
Q ss_pred cCEEEEeecCCCchHH-HHHHHHhhh-cCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTT-IARATFDKI-SSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTt-LA~~v~~~~-~~~F~~~~~~~ 217 (553)
.++|.++|+.|+|||| ||+..+.-. ...=..+.+++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT 240 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT 240 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE
Confidence 6899999999999987 666655533 22233344443
No 301
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.01 E-value=0.028 Score=52.68 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=27.3
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFL 216 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 216 (553)
..+|+|+|++|+||||||+.+...+...-...+++
T Consensus 24 ~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 67999999999999999999998764432234444
No 302
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=95.00 E-value=0.013 Score=61.17 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=23.1
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
+.+|.+.|.+|+||||+|.+++++.
T Consensus 255 p~vil~~G~~G~GKSt~a~~LA~~l 279 (475)
T PRK12337 255 PLHVLIGGVSGVGKSVLASALAYRL 279 (475)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 6889999999999999999999874
No 303
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.98 E-value=0.066 Score=58.02 Aligned_cols=72 Identities=22% Similarity=0.337 Sum_probs=45.4
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccCCCCcccHHHHHHHhc--C
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRDESMIPDIDLHFKRLS--R 259 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~--~ 259 (553)
.++..++|++|+||||||.-++++-. |.. +=+ | .|.. .....+-..|...+... ..+. .
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaG--YsV-vEI-N---ASDe-Rt~~~v~~kI~~avq~~-----------s~l~ads 386 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAG--YSV-VEI-N---ASDE-RTAPMVKEKIENAVQNH-----------SVLDADS 386 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcC--ceE-EEe-c---cccc-ccHHHHHHHHHHHHhhc-----------cccccCC
Confidence 67999999999999999999998521 221 111 1 2333 44455555555444332 1222 6
Q ss_pred CCeEEEEcCCCCh
Q 037613 260 RKVLVVFDDVTCF 272 (553)
Q Consensus 260 kr~LlVLDdv~~~ 272 (553)
++..||+|.++-.
T Consensus 387 rP~CLViDEIDGa 399 (877)
T KOG1969|consen 387 RPVCLVIDEIDGA 399 (877)
T ss_pred CcceEEEecccCC
Confidence 7888999998743
No 304
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.97 E-value=0.012 Score=33.61 Aligned_cols=20 Identities=10% Similarity=0.190 Sum_probs=18.3
Q ss_pred CccEEEcCCCCcccCCCCCC
Q 037613 533 KLVVIEMPHSNIQQFWDGTR 552 (553)
Q Consensus 533 ~L~~L~l~~s~i~~lp~~~~ 552 (553)
+|++|||++|+++.+|.+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 69999999999999999865
No 305
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.96 E-value=0.0082 Score=66.70 Aligned_cols=62 Identities=19% Similarity=0.283 Sum_probs=48.5
Q ss_pred hHhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCCCC---CCCCCCccEEEcCCCCc
Q 037613 475 NTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSLPS---NINQKKLVVIEMPHSNI 544 (553)
Q Consensus 475 ~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~LP~---~i~L~~L~~L~l~~s~i 544 (553)
..+.+|++|+.||++++ ++..| ..|+ |++|+.|.+++-++++-+. -|+|++|.+||++.+.-
T Consensus 167 ~lc~sFpNL~sLDIS~T-------nI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 167 QLCASFPNLRSLDISGT-------NISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred HHhhccCccceeecCCC-------CccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 34678999999999998 44446 4455 8999999999888777663 34899999999996653
No 306
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.95 E-value=0.1 Score=52.46 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=24.2
Q ss_pred hHHhhccc----cCEEEEeecCCCchHHHHHHHHh
Q 037613 174 AIESLLSA----APLLAIWGIGGIGKTTIARATFD 204 (553)
Q Consensus 174 ~l~~~L~~----~~vi~I~G~gGiGKTtLA~~v~~ 204 (553)
.+..+|.. ..++-|+|.+|+|||+|+..++-
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~ 118 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCV 118 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHH
Confidence 34445544 67889999999999999988764
No 307
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.95 E-value=0.061 Score=56.18 Aligned_cols=86 Identities=16% Similarity=0.097 Sum_probs=49.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccC--------CCCc------
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRD--------ESMI------ 247 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~--------~~~~------ 247 (553)
...++|+|..|+|||||++.+++.... +..++.. +++-. ..+..+....+..-+.. ..+.
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~~--d~~v~~~-iGER~---rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNADA--DVSVIGL-IGERG---REVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCC--CEEEEEE-EecCc---HHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 678999999999999999999876543 2334332 32221 23444444333321111 1110
Q ss_pred --ccHHHHHHHh--cCCCeEEEEcCCCChH
Q 037613 248 --PDIDLHFKRL--SRRKVLVVFDDVTCFN 273 (553)
Q Consensus 248 --~~~~~l~~~L--~~kr~LlVLDdv~~~~ 273 (553)
.....+.+++ +++.+|+++||+....
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr~A 261 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTRFA 261 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHHHH
Confidence 1122334444 4799999999997553
No 308
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.93 E-value=0.023 Score=58.56 Aligned_cols=29 Identities=31% Similarity=0.422 Sum_probs=25.0
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
.+-|.++|++|+|||++|+.++..+...|
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 46789999999999999999999776544
No 309
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.93 E-value=0.028 Score=57.26 Aligned_cols=49 Identities=29% Similarity=0.269 Sum_probs=41.1
Q ss_pred CCccchhhhHhhHHhhccccCEEEEeecCCCchHHHHHHHHhhhcCCCC
Q 037613 163 DRLVGVESRVVAIESLLSAAPLLAIWGIGGIGKTTIARATFDKISSDFE 211 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~ 211 (553)
..++|.++.+..+...+...+-+.+.|.+|+|||+||+.++..+...|-
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~ 72 (329)
T COG0714 24 KVVVGDEEVIELALLALLAGGHVLLEGPPGVGKTLLARALARALGLPFV 72 (329)
T ss_pred CeeeccHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 3488988888887777777788999999999999999999998775554
No 310
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.93 E-value=0.21 Score=51.67 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=22.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.++|.++|+.|+||||.+..++..+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999987654
No 311
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.91 E-value=0.014 Score=31.01 Aligned_cols=17 Identities=6% Similarity=0.262 Sum_probs=12.0
Q ss_pred CCccEEEcCCCCcccCC
Q 037613 532 KKLVVIEMPHSNIQQFW 548 (553)
Q Consensus 532 ~~L~~L~l~~s~i~~lp 548 (553)
.+|++|+|++|++++||
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47999999999999998
No 312
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.025 Score=62.66 Aligned_cols=46 Identities=24% Similarity=0.363 Sum_probs=38.6
Q ss_pred CCccchhhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 163 DRLVGVESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
+..+||++++.++.+.|.. -.--.++|.+|+|||+++.-++.++..
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~ 217 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVN 217 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhc
Confidence 5689999999999999987 334457899999999999999987543
No 313
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=94.88 E-value=0.0033 Score=65.72 Aligned_cols=69 Identities=16% Similarity=0.254 Sum_probs=49.8
Q ss_pred HhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCCCCCCCCCCccEEEcCCCCcccCCCCC
Q 037613 476 TFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSLPSNINQKKLVVIEMPHSNIQQFWDGT 551 (553)
Q Consensus 476 ~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~LP~~i~L~~L~~L~l~~s~i~~lp~~~ 551 (553)
.++.|-.|..|.|+.+ .+..+|+.+. |..|.||+|+.+++..||..++..-|++|-+++++++-||.++
T Consensus 93 ~~~~f~~Le~liLy~n-------~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~i 162 (722)
T KOG0532|consen 93 EACAFVSLESLILYHN-------CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEI 162 (722)
T ss_pred HHHHHHHHHHHHHHhc-------cceecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCccc
Confidence 3455566666777766 5666777775 7777777777777777777777777777777777777777765
No 314
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.87 E-value=0.073 Score=52.22 Aligned_cols=83 Identities=17% Similarity=0.119 Sum_probs=50.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHh-hcc---C-CCCc----ccHHH
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSN-LFR---D-ESMI----PDIDL 252 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~-l~~---~-~~~~----~~~~~ 252 (553)
.+++=|+|+.|.||||+|.+++-.....-...+|++.-+. ++...+ .++... +.. . .... ..++.
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~-----l~p~r~-~~l~~~~~d~l~v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHA-----LDPERA-KQLGVDLLDNLLVSQPDTGEQQLEIAEK 133 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCC-----CCHHHH-HHHHHhhhcceeEecCCCHHHHHHHHHH
Confidence 6789999999999999999988766666668899973322 444333 233333 211 1 1111 22333
Q ss_pred HHHHhcCCCeEEEEcCCC
Q 037613 253 HFKRLSRRKVLVVFDDVT 270 (553)
Q Consensus 253 l~~~L~~kr~LlVLDdv~ 270 (553)
+.+....+--|+|+|.|.
T Consensus 134 ~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 134 LARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHHhccCCCCEEEEecCc
Confidence 333333445699999885
No 315
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.86 E-value=0.044 Score=60.28 Aligned_cols=74 Identities=18% Similarity=0.176 Sum_probs=52.4
Q ss_pred CCCccchhhhHhhHHhhccccCEEEEeecCCCchHHHHHHHHhhhcCC-CCceEEEEechhhhcccCCHHHHHHHHHHhh
Q 037613 162 NDRLVGVESRVVAIESLLSAAPLLAIWGIGGIGKTTIARATFDKISSD-FEGSCFLENVREESQRLGGLACLRQKLLSNL 240 (553)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l 240 (553)
.+.++|.++.++.+...+...+-+.++|++|+||||+|+.+++.+... |...+++.|.. .....+++.+...+
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~------~~~~~~~~~v~~~~ 90 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQKRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPE------DPNMPRIVEVPAGE 90 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCC------CCchHHHHHHHHhh
Confidence 356899999888888877776677799999999999999999977654 45555665432 22334455555444
Q ss_pred c
Q 037613 241 F 241 (553)
Q Consensus 241 ~ 241 (553)
+
T Consensus 91 g 91 (608)
T TIGR00764 91 G 91 (608)
T ss_pred c
Confidence 3
No 316
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.85 E-value=0.029 Score=50.09 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=26.4
Q ss_pred EEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 184 LLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
++.|+|.+|+||||++..++......-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 4689999999999999999987655434455554
No 317
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=94.85 E-value=0.0089 Score=60.24 Aligned_cols=68 Identities=18% Similarity=0.203 Sum_probs=45.3
Q ss_pred HhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCC-----CCCC--CCCCccEEEcCCCCcc
Q 037613 476 TFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSL-----PSNI--NQKKLVVIEMPHSNIQ 545 (553)
Q Consensus 476 ~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~L-----P~~i--~L~~L~~L~l~~s~i~ 545 (553)
.+..+.+|+.|+|++|.+.+. +...++..+. +++|++|++++|++... ...+ ....|+.|++.+|.+.
T Consensus 188 ~l~~~~~L~~L~L~~n~i~~~--~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 188 GLKANCNLEVLDLNNNGLTDE--GASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHhCCCCCEEeccCCccChH--HHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 455667888888888765432 3444555554 77888888888877641 1112 2478888888888774
No 318
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.84 E-value=0.03 Score=57.79 Aligned_cols=29 Identities=31% Similarity=0.422 Sum_probs=24.6
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
...|.++|++|+|||+||+.++..+...|
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 36789999999999999999998765443
No 319
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.099 Score=51.13 Aligned_cols=29 Identities=34% Similarity=0.521 Sum_probs=26.4
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
+..++|||++|.|||-+|++|+.++..+|
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 56899999999999999999999887776
No 320
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.82 E-value=0.031 Score=52.83 Aligned_cols=27 Identities=33% Similarity=0.352 Sum_probs=23.2
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
..++||+|..|+|||||++.++--.+.
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 568999999999999999999874443
No 321
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.81 E-value=0.024 Score=51.85 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.3
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhc
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..|.|+|+.|+||||+|+.+++...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 5699999999999999999998753
No 322
>PRK14528 adenylate kinase; Provisional
Probab=94.81 E-value=0.11 Score=48.09 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.3
Q ss_pred CEEEEeecCCCchHHHHHHHHhhh
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
+.|.|.|++|+||||+|+.+++..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998765
No 323
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.81 E-value=0.022 Score=52.30 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=21.8
Q ss_pred CEEEEeecCCCchHHHHHHHHhhh
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
++|+|+|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999999854
No 324
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=94.80 E-value=0.026 Score=59.79 Aligned_cols=48 Identities=27% Similarity=0.385 Sum_probs=40.8
Q ss_pred CCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 160 HNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 160 ~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.....++|.+..++.+...+.. ...+.++|+.|+||||+|+.+++.+.
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~ 64 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALN 64 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4457899999999999998866 56788999999999999999998653
No 325
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=94.80 E-value=0.039 Score=61.96 Aligned_cols=62 Identities=18% Similarity=0.169 Sum_probs=35.8
Q ss_pred CCCCcEEEeecccCCCCCCCccccCCCCCCCCeeEEEecCCCCCCCCCCC------------------CCCCccEEEcCC
Q 037613 480 MHKLRFLKFYNSINGDNRCKVSYLQESPGFAEVRFLHRHGYPLKSLPSNI------------------NQKKLVVIEMPH 541 (553)
Q Consensus 480 ~~~LrvL~l~~~~~~~~~~~l~~lp~~i~L~~Lr~L~l~~~~l~~LP~~i------------------~L~~L~~L~l~~ 541 (553)
+++|+.|+|++| .+..+|..+ .+|+.|++++|++++||... .+.+|+.|+|++
T Consensus 241 p~~Lk~LdLs~N-------~LtsLP~lp--~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~ 311 (788)
T PRK15387 241 PPELRTLEVSGN-------QLTSLPVLP--PGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSD 311 (788)
T ss_pred CCCCcEEEecCC-------ccCcccCcc--cccceeeccCCchhhhhhchhhcCEEECcCCccccccccccccceeECCC
Confidence 567888888887 344455321 34444444444444433211 256777777777
Q ss_pred CCcccCCCC
Q 037613 542 SNIQQFWDG 550 (553)
Q Consensus 542 s~i~~lp~~ 550 (553)
++++.+|..
T Consensus 312 N~L~~Lp~l 320 (788)
T PRK15387 312 NQLASLPAL 320 (788)
T ss_pred CccccCCCC
Confidence 777777753
No 326
>PRK14530 adenylate kinase; Provisional
Probab=94.80 E-value=0.023 Score=53.97 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.8
Q ss_pred CEEEEeecCCCchHHHHHHHHhhh
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
+.|.|+|++|+||||+|+.+++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999875
No 327
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=94.78 E-value=0.17 Score=50.21 Aligned_cols=109 Identities=21% Similarity=0.268 Sum_probs=65.6
Q ss_pred CCCCccchhhhHhhHHhhccc------cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcc-cCCHHHHH
Q 037613 161 NNDRLVGVESRVVAIESLLSA------APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQR-LGGLACLR 233 (553)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~-~~~~~~l~ 233 (553)
+...++|-.++-+.+..++.. ..-+.|+|+.|.|||+|......+ ...|.....+..+.+.-.. ...+..+.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 446799999999999998876 667899999999999988777665 3334433333333222111 02345555
Q ss_pred HHHHHhhccCC----CCcccHHHHHHHhc------CCCeEEEEcCCC
Q 037613 234 QKLLSNLFRDE----SMIPDIDLHFKRLS------RRKVLVVFDDVT 270 (553)
Q Consensus 234 ~~ll~~l~~~~----~~~~~~~~l~~~L~------~kr~LlVLDdv~ 270 (553)
+++..++.... .-.+....+-..|+ .-+++.|+|..+
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfD 147 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFD 147 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhh
Confidence 55554443321 11133444444443 235888888775
No 328
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.76 E-value=0.024 Score=51.46 Aligned_cols=27 Identities=37% Similarity=0.544 Sum_probs=24.0
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
.++++|+|..|+|||||++.+...+..
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 468999999999999999999987654
No 329
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.76 E-value=0.025 Score=50.94 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=24.3
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
+-|.++||.|+||||+.+++++.+.-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 3588999999999999999998876665
No 330
>PRK04296 thymidine kinase; Provisional
Probab=94.75 E-value=0.033 Score=51.75 Aligned_cols=34 Identities=18% Similarity=0.012 Sum_probs=25.6
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCCCCceEEE
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSDFEGSCFL 216 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 216 (553)
.++.|+|..|.||||+|...+.+...+-..++++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 3678899999999999999998765553333333
No 331
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=94.75 E-value=0.37 Score=52.26 Aligned_cols=107 Identities=19% Similarity=0.298 Sum_probs=74.8
Q ss_pred CCCCccchhhhHhhHHhhccc-------cCEEEEeecCCCchHHHHHHHHhhhc-----CCCCceEEEEechhhhcccCC
Q 037613 161 NNDRLVGVESRVVAIESLLSA-------APLLAIWGIGGIGKTTIARATFDKIS-----SDFEGSCFLENVREESQRLGG 228 (553)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~-------~~vi~I~G~gGiGKTtLA~~v~~~~~-----~~F~~~~~~~~~~~~s~~~~~ 228 (553)
.+..+-+|+.+..+|...+.. ...+-|.|-+|.|||..+..|.+.+. ..-+.-.++. +. .-....
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yve-IN--gm~l~~ 470 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVE-IN--GLRLAS 470 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEE-Ec--ceeecC
Confidence 456688999999999998865 44788999999999999999998443 2223223332 11 111266
Q ss_pred HHHHHHHHHHhhccCCCCc-ccHHHHHHHhc-----CCCeEEEEcCCC
Q 037613 229 LACLRQKLLSNLFRDESMI-PDIDLHFKRLS-----RRKVLVVFDDVT 270 (553)
Q Consensus 229 ~~~l~~~ll~~l~~~~~~~-~~~~~l~~~L~-----~kr~LlVLDdv~ 270 (553)
..++...|...+.+..... ...+.+..+.. .+..++++|+++
T Consensus 471 ~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD 518 (767)
T KOG1514|consen 471 PREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELD 518 (767)
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHH
Confidence 7889999999888773332 45566666655 356899999885
No 332
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.74 E-value=0.14 Score=53.40 Aligned_cols=90 Identities=17% Similarity=0.206 Sum_probs=53.0
Q ss_pred hhHhhHHhhccccC-EEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccCCCCcc
Q 037613 170 SRVVAIESLLSAAP-LLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRDESMIP 248 (553)
Q Consensus 170 ~~~~~l~~~L~~~~-vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~ 248 (553)
.-+.++.+.+...+ ++.|.|+-++||||+++.+.....+. .+++......... ..+.+....
T Consensus 24 ~~~~~l~~~~~~~~~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~-~~l~d~~~~------------- 86 (398)
T COG1373 24 KLLPRLIKKLDLRPFIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDR-IELLDLLRA------------- 86 (398)
T ss_pred hhhHHHHhhcccCCcEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcch-hhHHHHHHH-------------
Confidence 44555555555544 99999999999999997777765554 4444311111111 111111111
Q ss_pred cHHHHHHHhcCCCeEEEEcCCCChHhHHHhhc
Q 037613 249 DIDLHFKRLSRRKVLVVFDDVTCFNQIESFIG 280 (553)
Q Consensus 249 ~~~~l~~~L~~kr~LlVLDdv~~~~~l~~l~~ 280 (553)
+.+.-..++..|+||.|.....|...+.
T Consensus 87 ----~~~~~~~~~~yifLDEIq~v~~W~~~lk 114 (398)
T COG1373 87 ----YIELKEREKSYIFLDEIQNVPDWERALK 114 (398)
T ss_pred ----HHHhhccCCceEEEecccCchhHHHHHH
Confidence 1111112788999999999888876553
No 333
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.73 E-value=0.092 Score=52.82 Aligned_cols=86 Identities=19% Similarity=0.169 Sum_probs=49.1
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccC--------CCCc------
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRD--------ESMI------ 247 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~--------~~~~------ 247 (553)
...++|.|..|+|||||.+.++...... .+++.. +++ ....+..+....+..-... ..+.
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~~~--~~vi~~-iGe---r~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTTAD--VNVIAL-IGE---RGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCCCC--EEEEEE-Eec---CCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 5689999999999999999998765432 222222 211 1134445544444331110 1110
Q ss_pred --ccHHHHHHHh--cCCCeEEEEcCCCChH
Q 037613 248 --PDIDLHFKRL--SRRKVLVVFDDVTCFN 273 (553)
Q Consensus 248 --~~~~~l~~~L--~~kr~LlVLDdv~~~~ 273 (553)
...-.+.+++ +++.+|+++||+....
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dsltr~a 172 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLTRFA 172 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccchHHH
Confidence 1122233333 4889999999997654
No 334
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.72 E-value=0.15 Score=51.90 Aligned_cols=89 Identities=19% Similarity=0.285 Sum_probs=53.8
Q ss_pred hhHHhhccc----cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccCCCCc-
Q 037613 173 VAIESLLSA----APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRDESMI- 247 (553)
Q Consensus 173 ~~l~~~L~~----~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~- 247 (553)
.++...|-. ..+|.|-|-+|||||||..+++.++..+- .+.++.. |. ...++.- -+..++......
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsG--EE-----S~~Qikl-RA~RL~~~~~~l~ 150 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSG--EE-----SLQQIKL-RADRLGLPTNNLY 150 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeC--Cc-----CHHHHHH-HHHHhCCCccceE
Confidence 344444444 67899999999999999999999988776 6666652 11 1222211 122333222222
Q ss_pred ----ccHHHHHHHh-cCCCeEEEEcCCC
Q 037613 248 ----PDIDLHFKRL-SRRKVLVVFDDVT 270 (553)
Q Consensus 248 ----~~~~~l~~~L-~~kr~LlVLDdv~ 270 (553)
...+.+.+.+ ..++-++|+|-+.
T Consensus 151 l~aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 151 LLAETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred EehhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 2334444444 4677899999874
No 335
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.71 E-value=0.032 Score=50.75 Aligned_cols=41 Identities=24% Similarity=0.320 Sum_probs=30.9
Q ss_pred ccchhhhHhhHHhhccc----cCEEEEeecCCCchHHHHHHHHhh
Q 037613 165 LVGVESRVVAIESLLSA----APLLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 165 ~vGr~~~~~~l~~~L~~----~~vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
+||.+..+.++.+.+.. ..-|.|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 46777777777776654 567789999999999999999983
No 336
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.71 E-value=0.025 Score=50.60 Aligned_cols=20 Identities=45% Similarity=0.654 Sum_probs=18.8
Q ss_pred EEEEeecCCCchHHHHHHHH
Q 037613 184 LLAIWGIGGIGKTTIARATF 203 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~ 203 (553)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 337
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.71 E-value=0.068 Score=49.50 Aligned_cols=90 Identities=22% Similarity=0.181 Sum_probs=52.7
Q ss_pred cccCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccC-----CCCcccHHHHH
Q 037613 180 SAAPLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRD-----ESMIPDIDLHF 254 (553)
Q Consensus 180 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~-----~~~~~~~~~l~ 254 (553)
.....++|+|..|+||||+++.+...+... ...+.+.+..+.... . .....-.... .......+.++
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLP-H------PNWVRLVTRPGNVEGSGEVTMADLLR 94 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCC-C------CCEEEEEEecCCCCCCCccCHHHHHH
Confidence 337899999999999999999998865433 223333322221110 0 0000000000 11124556677
Q ss_pred HHhcCCCeEEEEcCCCChHhHHH
Q 037613 255 KRLSRRKVLVVFDDVTCFNQIES 277 (553)
Q Consensus 255 ~~L~~kr~LlVLDdv~~~~~l~~ 277 (553)
..++..+=.++++.+.+.+.+..
T Consensus 95 ~~lR~~pd~i~igEir~~ea~~~ 117 (186)
T cd01130 95 SALRMRPDRIIVGEVRGGEALDL 117 (186)
T ss_pred HHhccCCCEEEEEccCcHHHHHH
Confidence 77888888999999988776543
No 338
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.71 E-value=0.02 Score=51.68 Aligned_cols=22 Identities=36% Similarity=0.661 Sum_probs=19.9
Q ss_pred EEEeecCCCchHHHHHHHHhhh
Q 037613 185 LAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~~~ 206 (553)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999875
No 339
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.70 E-value=0.07 Score=52.07 Aligned_cols=87 Identities=16% Similarity=0.124 Sum_probs=50.1
Q ss_pred cCEEEEeecCCCchHHHH-HHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccC--------CCCc-----
Q 037613 182 APLLAIWGIGGIGKTTIA-RATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRD--------ESMI----- 247 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA-~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~--------~~~~----- 247 (553)
-..++|.|..|+|||+|| ..+.++. +-+..+.+..+++-. .....+.+.+...-... ..+.
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~--~~~v~~V~~~iGer~---~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK--GKKVYCIYVAIGQKA---STVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc--CCCeEEEEEecccch---HHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 568999999999999996 5666543 234554444343322 34556666655332111 0110
Q ss_pred ---ccHHHHHHHh--cCCCeEEEEcCCCChH
Q 037613 248 ---PDIDLHFKRL--SRRKVLVVFDDVTCFN 273 (553)
Q Consensus 248 ---~~~~~l~~~L--~~kr~LlVLDdv~~~~ 273 (553)
...-.+.+++ +++.+||++||+....
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A 174 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDLSKQA 174 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcChHHHH
Confidence 0112233333 4789999999997653
No 340
>PRK04182 cytidylate kinase; Provisional
Probab=94.69 E-value=0.026 Score=51.69 Aligned_cols=24 Identities=42% Similarity=0.603 Sum_probs=21.9
Q ss_pred EEEEeecCCCchHHHHHHHHhhhc
Q 037613 184 LLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
+|+|.|+.|+||||+|+.+++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998753
No 341
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.66 E-value=0.033 Score=54.97 Aligned_cols=105 Identities=20% Similarity=0.165 Sum_probs=61.1
Q ss_pred CCccchhhhHhhHHhhccc----cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHH
Q 037613 163 DRLVGVESRVVAIESLLSA----APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLS 238 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~----~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~ 238 (553)
+.+.-.....+.+.++|.. ...|.|.|..|+||||++.++.+.+...-...+-+.+..|..-. . ..
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~-----~-----~~ 173 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLP-----G-----PN 173 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--S-----C-----SS
T ss_pred hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeec-----c-----cc
Confidence 3444334444455555543 68999999999999999999998766651222333322222110 0 00
Q ss_pred hhcc--CCCCcccHHHHHHHhcCCCeEEEEcCCCChHhHHH
Q 037613 239 NLFR--DESMIPDIDLHFKRLSRRKVLVVFDDVTCFNQIES 277 (553)
Q Consensus 239 ~l~~--~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~l~~ 277 (553)
.+.- ........+.++..|+..+=.++++.+.+.+....
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~ 214 (270)
T PF00437_consen 174 QIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEA 214 (270)
T ss_dssp EEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHH
T ss_pred eEEEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHH
Confidence 0000 01233567778888998889999999988877665
No 342
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.66 E-value=0.22 Score=51.95 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=23.3
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
...++|+|..|+|||||.+.++.....
T Consensus 137 Gqri~I~G~sG~GKTtLl~~i~~~~~~ 163 (413)
T TIGR03497 137 GQRVGIFAGSGVGKSTLLGMIARNAKA 163 (413)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 678999999999999999988875543
No 343
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.65 E-value=0.027 Score=51.28 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=22.0
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhc
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..|.|+|+.|+||||+|+.++++..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999998763
No 344
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.65 E-value=0.027 Score=51.64 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.6
Q ss_pred EEEEeecCCCchHHHHHHHHhh
Q 037613 184 LLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
.|.|.|.+|+||||+|+.++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999997
No 345
>PRK13975 thymidylate kinase; Provisional
Probab=94.62 E-value=0.027 Score=52.56 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=23.3
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
..|.|.|+.|+||||+|+.+++++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47899999999999999999998764
No 346
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.60 E-value=0.14 Score=51.92 Aligned_cols=44 Identities=18% Similarity=0.303 Sum_probs=29.7
Q ss_pred hHHhhccc----cCEEEEeecCCCchHHHHHHHHhh--hcCC----CCceEEEE
Q 037613 174 AIESLLSA----APLLAIWGIGGIGKTTIARATFDK--ISSD----FEGSCFLE 217 (553)
Q Consensus 174 ~l~~~L~~----~~vi~I~G~gGiGKTtLA~~v~~~--~~~~----F~~~~~~~ 217 (553)
.|..+|.. ..++-|+|.+|+|||+|+..++-. .... -..++|++
T Consensus 114 ~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId 167 (344)
T PLN03187 114 ALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID 167 (344)
T ss_pred hHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE
Confidence 34444544 678889999999999999988642 2111 13567776
No 347
>PRK06620 hypothetical protein; Validated
Probab=94.59 E-value=0.025 Score=53.59 Aligned_cols=24 Identities=25% Similarity=0.129 Sum_probs=21.3
Q ss_pred CEEEEeecCCCchHHHHHHHHhhh
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
+.+.|||++|+|||+|++.+++..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 568999999999999999987754
No 348
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=94.57 E-value=0.012 Score=56.84 Aligned_cols=63 Identities=14% Similarity=0.212 Sum_probs=34.5
Q ss_pred hhcCCCCcEEEeecccCCCCCCCccccCCCC-CCCCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCcccC
Q 037613 477 FVKMHKLRFLKFYNSINGDNRCKVSYLQESP-GFAEVRFLHRHGYPLKSLPSNI-NQKKLVVIEMPHSNIQQF 547 (553)
Q Consensus 477 ~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i-~L~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~~s~i~~l 547 (553)
..-.+.+|+|+++.+ ++..+-+ . .|.+|..|+|+++.+.++--.= +|-|..+|+|.++.|+.|
T Consensus 303 vKL~Pkir~L~lS~N-------~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L 367 (490)
T KOG1259|consen 303 VKLAPKLRRLILSQN-------RIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL 367 (490)
T ss_pred hhhccceeEEecccc-------ceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh
Confidence 344455666666655 3322322 2 2456666666666665555444 566666666666665544
No 349
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.56 E-value=0.05 Score=53.57 Aligned_cols=42 Identities=19% Similarity=0.220 Sum_probs=32.6
Q ss_pred hhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhhcCCCCceE
Q 037613 173 VAIESLLSA--APLLAIWGIGGIGKTTIARATFDKISSDFEGSC 214 (553)
Q Consensus 173 ~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~ 214 (553)
++.+.++.. ..++.|.|.+|+|||||...+.+.+.......+
T Consensus 93 ~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~V 136 (290)
T PRK10463 93 ERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAV 136 (290)
T ss_pred HHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEE
Confidence 344555544 789999999999999999999998776654433
No 350
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=94.56 E-value=0.02 Score=50.18 Aligned_cols=40 Identities=28% Similarity=0.330 Sum_probs=30.1
Q ss_pred cchhhhHhhHHhhccc----cCEEEEeecCCCchHHHHHHHHhh
Q 037613 166 VGVESRVVAIESLLSA----APLLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 166 vGr~~~~~~l~~~L~~----~~vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
||....++++.+.+.. ...|.|+|..|+||+++|+.+++.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 4666667766666655 677899999999999999998874
No 351
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.55 E-value=0.032 Score=49.97 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=25.6
Q ss_pred EEEEeecCCCchHHHHHHHHhhhcCC-CCceEE
Q 037613 184 LLAIWGIGGIGKTTIARATFDKISSD-FEGSCF 215 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~ 215 (553)
+++|+|+.|+|||||+.++...++.+ +...+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 58999999999999999999977654 444433
No 352
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.54 E-value=0.029 Score=52.80 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=22.6
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..+|+|+|+.|+||||||+.++...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999864
No 353
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.54 E-value=0.029 Score=52.39 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=22.0
Q ss_pred CEEEEeecCCCchHHHHHHHHhhh
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.+|.|.|.+|+||||+|+.++++.
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999999874
No 354
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.52 E-value=1.2 Score=43.52 Aligned_cols=46 Identities=22% Similarity=0.316 Sum_probs=36.0
Q ss_pred CCccchhhhHhhHHhhccc--------------cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 163 DRLVGVESRVVAIESLLSA--------------APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~--------------~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
...-|.+...+.|.+...- -+-|.++|++|.||+.||++|+.+..+
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS 192 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS 192 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC
Confidence 4567888888887775432 457889999999999999999986543
No 355
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.50 E-value=0.027 Score=55.51 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=22.6
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.+-+.++|+.|+|||++++...++..
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~ 58 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLD 58 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCST
T ss_pred CCcEEEECCCCCchhHHHHhhhccCC
Confidence 67789999999999999999887543
No 356
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.49 E-value=0.089 Score=54.93 Aligned_cols=86 Identities=15% Similarity=0.139 Sum_probs=49.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccC--------CCCc------
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRD--------ESMI------ 247 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~--------~~~~------ 247 (553)
...++|.|..|+|||||.+.+++.... +.+++. .+++-. ..+..+....+..-... ..+.
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~~~--dv~V~~-liGERg---rEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSAEV--DVTVLA-LIGERG---REVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCCCC--CEEEEE-EEccCc---HHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 678999999999999999999986543 333333 233322 22444443333221110 0010
Q ss_pred --ccHHHHHHHh--cCCCeEEEEcCCCChH
Q 037613 248 --PDIDLHFKRL--SRRKVLVVFDDVTCFN 273 (553)
Q Consensus 248 --~~~~~l~~~L--~~kr~LlVLDdv~~~~ 273 (553)
.....+.+++ +++.+|+++||+....
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslTR~A 265 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVTRFA 265 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHHH
Confidence 1112234444 5899999999997654
No 357
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.49 E-value=0.028 Score=52.09 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.7
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhc
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+.|+|+.|+|||||++.++....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4689999999999999999987543
No 358
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.49 E-value=0.011 Score=61.88 Aligned_cols=62 Identities=18% Similarity=0.242 Sum_probs=38.3
Q ss_pred CCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCcccCCCC
Q 037613 482 KLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSLPSNI-NQKKLVVIEMPHSNIQQFWDG 550 (553)
Q Consensus 482 ~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~~s~i~~lp~~ 550 (553)
+|+.|+++++ .+..+|..++ +++|+.|+++.+++.++|... .+.+|+.|+++++++..+|..
T Consensus 141 nL~~L~l~~N-------~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~ 204 (394)
T COG4886 141 NLKELDLSDN-------KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPE 204 (394)
T ss_pred hccccccccc-------chhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchh
Confidence 5666666665 4444554554 666666666666666666666 566666666666666666653
No 359
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.46 E-value=0.084 Score=55.91 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=32.0
Q ss_pred hHHhhccc----cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 174 AIESLLSA----APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 174 ~l~~~L~~----~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
.+...|.. ..++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34444543 668999999999999999999987654333456665
No 360
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.44 E-value=0.046 Score=50.91 Aligned_cols=42 Identities=31% Similarity=0.345 Sum_probs=32.3
Q ss_pred CCccchhhhHhhHHhhccccCEEEEeecCCCchHHHHHHHHh
Q 037613 163 DRLVGVESRVVAIESLLSAAPLLAIWGIGGIGKTTIARATFD 204 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~vi~I~G~gGiGKTtLA~~v~~ 204 (553)
..++|.+.....+.-......-+.++|.+|+|||++|+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGGHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcCCCCeEEECCCCCCHHHHHHHHHH
Confidence 567888877777766665677899999999999999999885
No 361
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.04 Score=59.00 Aligned_cols=47 Identities=21% Similarity=0.332 Sum_probs=35.7
Q ss_pred CccchhhhHhhHHhhccc---------------cCEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 164 RLVGVESRVVAIESLLSA---------------APLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~---------------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
++=|.++...+|.+.... .+-|..+|++|+|||++|+++++.-.-.|
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nF 496 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNF 496 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCe
Confidence 344577666666654432 67899999999999999999999766665
No 362
>PRK05922 type III secretion system ATPase; Validated
Probab=94.43 E-value=0.14 Score=53.49 Aligned_cols=86 Identities=10% Similarity=0.104 Sum_probs=48.7
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccCC-------CCc-------
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRDE-------SMI------- 247 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~-------~~~------- 247 (553)
...++|.|..|+|||||.+.+...... +...+.. +++.. ........+......... .+.
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~~~--d~gvi~l-iGerg---~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGSKS--TINVIAL-IGERG---REVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCCC--CceEEEE-eCCCC---chHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 678999999999999999999875432 2223321 22211 223344444433221111 000
Q ss_pred --ccHHHHHHHh--cCCCeEEEEcCCCChH
Q 037613 248 --PDIDLHFKRL--SRRKVLVVFDDVTCFN 273 (553)
Q Consensus 248 --~~~~~l~~~L--~~kr~LlVLDdv~~~~ 273 (553)
.....+.+++ +++.+||++||+....
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~DslTR~A 260 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSLSRWI 260 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHHH
Confidence 1122344444 4799999999997654
No 363
>PRK05973 replicative DNA helicase; Provisional
Probab=94.43 E-value=0.14 Score=49.16 Aligned_cols=36 Identities=17% Similarity=0.120 Sum_probs=27.1
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..++.|.|.+|+|||++|.+++.....+=..++++.
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 678999999999999999998875543333344554
No 364
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=94.43 E-value=0.011 Score=59.39 Aligned_cols=68 Identities=21% Similarity=0.274 Sum_probs=44.8
Q ss_pred ChhHhhcCCCCcEEEeecccCCCCCCCccccCC-CC-CCCCeeEEEecCCCCCCCCCCC--CCCCccEEEcCCCCcccC
Q 037613 473 NPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQE-SP-GFAEVRFLHRHGYPLKSLPSNI--NQKKLVVIEMPHSNIQQF 547 (553)
Q Consensus 473 ~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~-~i-~L~~Lr~L~l~~~~l~~LP~~i--~L~~L~~L~l~~s~i~~l 547 (553)
+...|.++++||.|+|+++. ++.+-+ .+ |+.+|+.|.|.+++|+.+-+.+ +|..|.+|+|.+++|..+
T Consensus 266 P~~cf~~L~~L~~lnlsnN~-------i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~ 337 (498)
T KOG4237|consen 266 PAKCFKKLPNLRKLNLSNNK-------ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTV 337 (498)
T ss_pred hHHHHhhcccceEeccCCCc-------cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEE
Confidence 55668999999999998874 333432 23 3666666666666666666654 466666666666666554
No 365
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=94.41 E-value=0.038 Score=55.61 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=23.6
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
...|+++|+.|+||||+++.++.+..
T Consensus 133 ~~~I~l~G~~GsGKStvg~~La~~Lg 158 (309)
T PRK08154 133 RRRIALIGLRGAGKSTLGRMLAARLG 158 (309)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999999998763
No 366
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.39 E-value=0.16 Score=50.79 Aligned_cols=94 Identities=20% Similarity=0.195 Sum_probs=55.5
Q ss_pred HhhccccCEEEEeecCCCchHHHHHHHHhhhcCCCC--ceEEEEechhhhcccCCHHHHHHHHHHhhccCCCCcccHHHH
Q 037613 176 ESLLSAAPLLAIWGIGGIGKTTIARATFDKISSDFE--GSCFLENVREESQRLGGLACLRQKLLSNLFRDESMIPDIDLH 253 (553)
Q Consensus 176 ~~~L~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l 253 (553)
...+.....+.|.|..|+||||+++++.+.+....+ ..+-+.+..|......+.. .+..........+.+
T Consensus 126 ~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v--------~~~~~~~~~~~~~~l 197 (299)
T TIGR02782 126 REAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVV--------QLRTSDDAISMTRLL 197 (299)
T ss_pred HHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEE--------EEEecCCCCCHHHHH
Confidence 333333678889999999999999999987765322 2333333322211000000 000001111456677
Q ss_pred HHHhcCCCeEEEEcCCCChHhHHH
Q 037613 254 FKRLSRRKVLVVFDDVTCFNQIES 277 (553)
Q Consensus 254 ~~~L~~kr~LlVLDdv~~~~~l~~ 277 (553)
+..|+..+=.||+..+...+.+..
T Consensus 198 ~~aLR~~pD~iivGEiR~~ea~~~ 221 (299)
T TIGR02782 198 KATLRLRPDRIIVGEVRGGEALDL 221 (299)
T ss_pred HHHhcCCCCEEEEeccCCHHHHHH
Confidence 888888888899999987765543
No 367
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.37 E-value=0.076 Score=50.58 Aligned_cols=36 Identities=33% Similarity=0.372 Sum_probs=24.3
Q ss_pred hHhhHHhhccccCEEEEeecCCCchHHHHHHHHhhh
Q 037613 171 RVVAIESLLSAAPLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 171 ~~~~l~~~L~~~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..+.+...+....+..|+|++|.||||++..+...+
T Consensus 6 Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 6 QREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHh
Confidence 344555555544468999999999998777777655
No 368
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.37 E-value=0.11 Score=54.43 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=22.0
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
...++|+|..|+|||||++.++...
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~ 189 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD 189 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 6789999999999999999887643
No 369
>PHA02244 ATPase-like protein
Probab=94.37 E-value=0.054 Score=55.02 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=32.8
Q ss_pred CCccchhhhHh----hHHhhccccCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 163 DRLVGVESRVV----AIESLLSAAPLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 163 ~~~vGr~~~~~----~l~~~L~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
..++|....+. .+..++....-|.|+|++|+|||+||+++++....
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg~ 145 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALDL 145 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35677555554 34444444566888999999999999999987543
No 370
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.36 E-value=0.022 Score=59.44 Aligned_cols=68 Identities=16% Similarity=0.298 Sum_probs=59.9
Q ss_pred HhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CC-CeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCcccCCCC
Q 037613 476 TFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FA-EVRFLHRHGYPLKSLPSNI-NQKKLVVIEMPHSNIQQFWDG 550 (553)
Q Consensus 476 ~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~-~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~~s~i~~lp~~ 550 (553)
.....+.+..|++.++ .+..+|..++ +. +|+.|+++++++..+|..+ .|++|+.|++.++++..+|..
T Consensus 111 ~~~~~~~l~~L~l~~n-------~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~ 181 (394)
T COG4886 111 ELLELTNLTSLDLDNN-------NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKL 181 (394)
T ss_pred hhhcccceeEEecCCc-------ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhh
Confidence 3445578999999988 6777998888 53 9999999999999999888 799999999999999999975
No 371
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.35 E-value=0.066 Score=53.99 Aligned_cols=54 Identities=30% Similarity=0.340 Sum_probs=38.2
Q ss_pred CCCccchhhhHhh---HHhhccc----cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEE
Q 037613 162 NDRLVGVESRVVA---IESLLSA----APLLAIWGIGGIGKTTIARATFDKISSDFEGSCF 215 (553)
Q Consensus 162 ~~~~vGr~~~~~~---l~~~L~~----~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~ 215 (553)
...+||.....+. +.++... .+.|.+.|++|.|||+||..+++.+....|.+..
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~i 83 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSI 83 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEE
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEc
Confidence 4679998766553 3334433 7899999999999999999999999987765443
No 372
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=94.35 E-value=0.13 Score=54.42 Aligned_cols=88 Identities=17% Similarity=0.186 Sum_probs=53.1
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCC-CceEEEEechhhhcccCCHHHHHHHHHHhhcc-CC--------------C
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDF-EGSCFLENVREESQRLGGLACLRQKLLSNLFR-DE--------------S 245 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~-~~--------------~ 245 (553)
-..++|.|..|+|||||+..+...+.... +.+++. .+++-. ..+..+...++..-.. .. .
T Consensus 161 GQR~gIfgg~GvGKs~L~~~~~~~~~~~~~dv~V~~-lIGERg---rEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd 236 (494)
T CHL00060 161 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG-GVGERT---REGNDLYMEMKESGVINEQNIAESKVALVYGQMN 236 (494)
T ss_pred CCEEeeecCCCCChhHHHHHHHHHHHHhcCCeEEEE-EeccCc---hHHHHHHHHHHhcCccccCcccccceEEEEECCC
Confidence 57899999999999999999887644322 344444 344332 3355666666541110 00 0
Q ss_pred Cc--------ccHHHHHHHhc--C-CCeEEEEcCCCChH
Q 037613 246 MI--------PDIDLHFKRLS--R-RKVLVVFDDVTCFN 273 (553)
Q Consensus 246 ~~--------~~~~~l~~~L~--~-kr~LlVLDdv~~~~ 273 (553)
.. .....+.++++ + +.+||++||+....
T Consensus 237 ~p~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~A 275 (494)
T CHL00060 237 EPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFV 275 (494)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHHH
Confidence 00 12334566664 3 48999999997654
No 373
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=94.34 E-value=0.034 Score=60.25 Aligned_cols=46 Identities=28% Similarity=0.529 Sum_probs=38.2
Q ss_pred CCCCCccchhhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhh
Q 037613 160 HNNDRLVGVESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 160 ~~~~~~vGr~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
...++++|.+..++.+...+.. ..-+.|+|.+|+|||++|+.+++.
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3445799999999998877654 566789999999999999999864
No 374
>PRK15453 phosphoribulokinase; Provisional
Probab=94.32 E-value=0.054 Score=52.92 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=23.1
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+|+|.|.+|+||||+|+.+++.+.
T Consensus 5 ~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 5 HPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 57899999999999999999987654
No 375
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.32 E-value=0.036 Score=50.30 Aligned_cols=23 Identities=39% Similarity=0.600 Sum_probs=21.3
Q ss_pred EEEEeecCCCchHHHHHHHHhhh
Q 037613 184 LLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
+|+|.|+.|+||||+|+.++++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 78999999999999999998864
No 376
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=94.32 E-value=0.0042 Score=62.24 Aligned_cols=92 Identities=20% Similarity=0.313 Sum_probs=61.2
Q ss_pred ccccccCCCccccccChhHhhcCCCCcEEEeecccCCC------------------CCCCccccCCCC-C-CCCeeEEEe
Q 037613 458 EGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGD------------------NRCKVSYLQESP-G-FAEVRFLHR 517 (553)
Q Consensus 458 ~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~------------------~~~~l~~lp~~i-~-L~~Lr~L~l 517 (553)
..|.|+..+ -..+++.+|+.+++||.|||+++.++. ..-+|+++|... + |..|+-|.+
T Consensus 70 veirLdqN~--I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 70 VEIRLDQNQ--ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred eEEEeccCC--cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 334454443 446789999999999999999763211 001666666554 3 777777777
Q ss_pred cCCCCCCCCCCC--CCCCccEEEcCCCCcccCCCCC
Q 037613 518 HGYPLKSLPSNI--NQKKLVVIEMPHSNIQQFWDGT 551 (553)
Q Consensus 518 ~~~~l~~LP~~i--~L~~L~~L~l~~s~i~~lp~~~ 551 (553)
.-+.+..++... .|++|..|.+.++.++.+++|+
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~t 183 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGT 183 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhcccc
Confidence 777777766554 4777777777777777777754
No 377
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.31 E-value=0.24 Score=45.04 Aligned_cols=78 Identities=12% Similarity=0.046 Sum_probs=44.8
Q ss_pred EEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccCCCCc---ccHHHHHHHhcC-
Q 037613 184 LLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRDESMI---PDIDLHFKRLSR- 259 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~---~~~~~l~~~L~~- 259 (553)
++.|.|.+|+|||++|.+++.. .....+++.. ... .+. .+.+.+........... +....+.+.+..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at----~~~-~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~ 71 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIAT----AEA-FDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKEL 71 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEEc----cCc-CCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc
Confidence 3678999999999999999865 2234555542 222 333 34555444332222222 344455555532
Q ss_pred -CCeEEEEcCCC
Q 037613 260 -RKVLVVFDDVT 270 (553)
Q Consensus 260 -kr~LlVLDdv~ 270 (553)
+.-.+++|.+.
T Consensus 72 ~~~~~VLIDclt 83 (169)
T cd00544 72 DPGDVVLIDCLT 83 (169)
T ss_pred CCCCEEEEEcHh
Confidence 23479999874
No 378
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.23 E-value=0.018 Score=63.95 Aligned_cols=14 Identities=14% Similarity=0.297 Sum_probs=7.4
Q ss_pred CCCccEEEcCCCCc
Q 037613 531 QKKLVVIEMPHSNI 544 (553)
Q Consensus 531 L~~L~~L~l~~s~i 544 (553)
|++|+.||.++|.+
T Consensus 249 LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 249 LPELRFLDCSGTDI 262 (699)
T ss_pred CccccEEecCCcch
Confidence 55555555555544
No 379
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.23 E-value=0.055 Score=53.05 Aligned_cols=36 Identities=22% Similarity=0.220 Sum_probs=32.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
.+++.|+|.+|+|||++|.++..+...+...++|+.
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 789999999999999999999998777788888887
No 380
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=0.26 Score=55.58 Aligned_cols=97 Identities=21% Similarity=0.334 Sum_probs=66.3
Q ss_pred CCccchhhhHhhHHhhccc----------cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHH
Q 037613 163 DRLVGVESRVVAIESLLSA----------APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACL 232 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~----------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l 232 (553)
...+|.++.+..|...+.. .-...+.|+.|+|||-||++++.-+.+..+.-+-++ +.+.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-----------mse~ 630 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-----------MSEF 630 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec-----------hhhh
Confidence 4578888888888877655 224567899999999999999998866666555443 2223
Q ss_pred HHHHHHhhccCCCCc---ccHHHHHHHhcCCCe-EEEEcCCCCh
Q 037613 233 RQKLLSNLFRDESMI---PDIDLHFKRLSRRKV-LVVFDDVTCF 272 (553)
Q Consensus 233 ~~~ll~~l~~~~~~~---~~~~~l~~~L~~kr~-LlVLDdv~~~ 272 (553)
.. .+.+.+.+... +....+.+.++.++| +|.||||+..
T Consensus 631 ~e--vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 631 QE--VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred hh--hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 33 22332322222 455688888988886 7788999854
No 381
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.22 E-value=0.061 Score=53.99 Aligned_cols=34 Identities=35% Similarity=0.432 Sum_probs=26.3
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCCCCceEEE
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSDFEGSCFL 216 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 216 (553)
+++.+.|.||+||||+|.+.+-..........-+
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlv 36 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLV 36 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEE
Confidence 6889999999999999999877665555434433
No 382
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.20 E-value=0.054 Score=48.65 Aligned_cols=33 Identities=27% Similarity=0.287 Sum_probs=26.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSC 214 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~ 214 (553)
..+|-++|.+|.||||+|.++++++...--...
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y 55 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVY 55 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 468889999999999999999998766544333
No 383
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=94.19 E-value=1.7 Score=42.73 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=25.3
Q ss_pred CEEEEeecCCCchHHHHHHHHh--hhcCCCCceEEEE
Q 037613 183 PLLAIWGIGGIGKTTIARATFD--KISSDFEGSCFLE 217 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~--~~~~~F~~~~~~~ 217 (553)
-+..|+|+.|+||+.|.+.+.. .+..-=+.++|++
T Consensus 88 ~I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFIt 124 (369)
T PF02456_consen 88 FIGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFIT 124 (369)
T ss_pred eEEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEEC
Confidence 3456689999999999998876 3444445666664
No 384
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.18 E-value=0.048 Score=52.23 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=25.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEG 212 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~ 212 (553)
+..|.++||+|.||||..+.++..+...+..
T Consensus 19 p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p 49 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFMQRLNSHLHAKKTP 49 (366)
T ss_pred CcEEEEEecCCCCchhHHHHHHHHHhhccCC
Confidence 5678889999999999999999877666543
No 385
>PRK14527 adenylate kinase; Provisional
Probab=94.17 E-value=0.041 Score=51.14 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.5
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..+|.|.|++|+||||+|+.++++.
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998765
No 386
>PF13245 AAA_19: Part of AAA domain
Probab=94.16 E-value=0.18 Score=39.09 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=18.3
Q ss_pred cCEEEEeecCCCchHH-HHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTT-IARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTt-LA~~v~~~~ 206 (553)
.+++.|.|++|.|||+ ++..+.+-+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678889999999995 445555544
No 387
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=94.16 E-value=0.09 Score=44.53 Aligned_cols=25 Identities=44% Similarity=0.594 Sum_probs=22.0
Q ss_pred EEEeecCCCchHHHHHHHHhhhcCC
Q 037613 185 LAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
|.+.|.||+||||++..++..+...
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~ 26 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEK 26 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 7899999999999999999876554
No 388
>PRK13695 putative NTPase; Provisional
Probab=94.14 E-value=0.048 Score=49.85 Aligned_cols=33 Identities=24% Similarity=0.387 Sum_probs=24.8
Q ss_pred EEEEeecCCCchHHHHHHHHhhhcC-CCCceEEE
Q 037613 184 LLAIWGIGGIGKTTIARATFDKISS-DFEGSCFL 216 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~ 216 (553)
.++|+|.+|+|||||++.+++.+.. .+....|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4789999999999999999886543 34433343
No 389
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.14 E-value=0.074 Score=52.06 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=27.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..++.|.|.+|+|||++|.+++.....+=..++++.
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 679999999999999999998765433334566665
No 390
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.11 E-value=0.058 Score=55.66 Aligned_cols=16 Identities=6% Similarity=-0.033 Sum_probs=8.5
Q ss_pred CccEEEcCCCCcccCC
Q 037613 533 KLVVIEMPHSNIQQFW 548 (553)
Q Consensus 533 ~L~~L~l~~s~i~~lp 548 (553)
+|++|++.+|....+|
T Consensus 157 SLk~L~Is~c~~i~LP 172 (426)
T PRK15386 157 SLKTLSLTGCSNIILP 172 (426)
T ss_pred cccEEEecCCCcccCc
Confidence 4566666655544433
No 391
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.11 E-value=0.055 Score=53.21 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=28.2
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
++|+|+|.+|+|||||+..+...++.+. .++.+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5899999999999999999999887775 444443
No 392
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.09 E-value=0.054 Score=51.58 Aligned_cols=47 Identities=26% Similarity=0.347 Sum_probs=37.5
Q ss_pred CCccchhhhHh---hHHhhccc--------cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 163 DRLVGVESRVV---AIESLLSA--------APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 163 ~~~vGr~~~~~---~l~~~L~~--------~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
++.||.++... -|.+.|.. ++-|..+|++|.|||.+|++++++.+..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp 178 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP 178 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc
Confidence 56888877654 35556655 7899999999999999999999976544
No 393
>PRK06761 hypothetical protein; Provisional
Probab=94.09 E-value=0.061 Score=52.92 Aligned_cols=27 Identities=37% Similarity=0.540 Sum_probs=24.0
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
++|.|.|++|+||||+|+.+++.+...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 579999999999999999999977654
No 394
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.08 E-value=0.036 Score=44.57 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=21.7
Q ss_pred EEEEeecCCCchHHHHHHHHhhhcC
Q 037613 184 LLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
++.+.|.+|+||||++..++..++.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4788999999999999999987654
No 395
>PTZ00035 Rad51 protein; Provisional
Probab=94.08 E-value=0.25 Score=50.23 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=25.7
Q ss_pred hhHHhhccc----cCEEEEeecCCCchHHHHHHHHhh
Q 037613 173 VAIESLLSA----APLLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 173 ~~l~~~L~~----~~vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
..+..+|.. ..++.|+|.+|+|||||+..++-.
T Consensus 105 ~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~ 141 (337)
T PTZ00035 105 TQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVT 141 (337)
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHH
Confidence 344455544 678999999999999999988753
No 396
>PRK05439 pantothenate kinase; Provisional
Probab=94.08 E-value=0.055 Score=54.02 Aligned_cols=27 Identities=30% Similarity=0.319 Sum_probs=23.6
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
.-+|||.|.+|+||||+|+.+...+..
T Consensus 86 ~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 86 PFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 669999999999999999999886543
No 397
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.07 E-value=0.046 Score=58.69 Aligned_cols=51 Identities=25% Similarity=0.372 Sum_probs=36.4
Q ss_pred CccchhhhHhhHHhhccc-------cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEE
Q 037613 164 RLVGVESRVVAIESLLSA-------APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFL 216 (553)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~-------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 216 (553)
+++--..-++++..||.. .+++.++|++|+||||.++.+++++. |+..=|.
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg--~~v~Ew~ 77 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG--FEVQEWI 77 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC--CeeEEec
Confidence 344444556667777654 56899999999999999999998652 4444454
No 398
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=94.07 E-value=0.093 Score=51.95 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.7
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
+-+|.|.|.+|+||||+|..+++++
T Consensus 92 p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4588999999999999999999876
No 399
>PRK14526 adenylate kinase; Provisional
Probab=94.07 E-value=0.22 Score=47.11 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=19.8
Q ss_pred EEEeecCCCchHHHHHHHHhhh
Q 037613 185 LAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~~~ 206 (553)
+.|+|++|+||||+|+.++...
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7799999999999999998754
No 400
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.06 E-value=0.24 Score=45.03 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=21.2
Q ss_pred CEEEEeecCCCchHHHHHHHHhhh
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.++.|.|.+|+||||+|..++.+.
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc
Confidence 368999999999999999998764
No 401
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.05 E-value=0.12 Score=54.79 Aligned_cols=45 Identities=20% Similarity=0.306 Sum_probs=32.6
Q ss_pred hhHHhhccc----cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 173 VAIESLLSA----APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 173 ~~l~~~L~~----~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..+..+|.. ..++.|.|.+|+|||||+.+++......=..++|+.
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 444455543 678999999999999999999876654433456665
No 402
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.01 E-value=0.059 Score=49.66 Aligned_cols=34 Identities=24% Similarity=0.105 Sum_probs=25.3
Q ss_pred EEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 184 LLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
++.|.|.+|+|||+||.+++......=..++|+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 3678999999999999998875443334456665
No 403
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=94.00 E-value=0.042 Score=51.33 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=20.2
Q ss_pred CEEEEeecCCCchHHHHHHHHh
Q 037613 183 PLLAIWGIGGIGKTTIARATFD 204 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (553)
.+|||+|+.|+||||.|+.+.+
T Consensus 3 ~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 3 LIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred eEEEEecCCCCCHHHHHHHHHH
Confidence 5899999999999999998776
No 404
>PLN02200 adenylate kinase family protein
Probab=93.99 E-value=0.043 Score=52.80 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=22.1
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..+|.|.|++|+||||+|+.++++.
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998764
No 405
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.99 E-value=0.043 Score=47.74 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=21.3
Q ss_pred cCEEEEeecCCCchHHHHHHHHhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
.+-|.|.|-+|+||||+|.+++..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHH
Confidence 356899999999999999999964
No 406
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=0.054 Score=56.59 Aligned_cols=43 Identities=28% Similarity=0.394 Sum_probs=33.8
Q ss_pred CCccchhh---hHhhHHhhccc-----------cCEEEEeecCCCchHHHHHHHHhh
Q 037613 163 DRLVGVES---RVVAIESLLSA-----------APLLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 163 ~~~vGr~~---~~~~l~~~L~~-----------~~vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
++.-|.|+ ++++|.+.|.+ ++=|.++|++|.|||-||++++-+
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 45667665 55666777766 678999999999999999999864
No 407
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.98 E-value=0.072 Score=47.73 Aligned_cols=35 Identities=20% Similarity=0.429 Sum_probs=29.2
Q ss_pred hhHhhHHhhccccCEEEEeecCCCchHHHHHHHHhh
Q 037613 170 SRVVAIESLLSAAPLLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 170 ~~~~~l~~~L~~~~vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
+.++++.+.|.. +++.++|..|+|||||...+...
T Consensus 24 ~g~~~l~~~l~~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLKG-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHTT-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhcC-CEEEEECCCCCCHHHHHHHHHhh
Confidence 446667777766 89999999999999999998874
No 408
>PRK13768 GTPase; Provisional
Probab=93.95 E-value=0.063 Score=52.35 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=22.2
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
.++.|.|+||+||||++..+......
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~ 28 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEE 28 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHh
Confidence 47899999999999999988876544
No 409
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.93 E-value=0.043 Score=54.37 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=22.4
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
+.+|||.|..|+||||+|+.+...+.
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 67999999999999999988776544
No 410
>PRK06820 type III secretion system ATPase; Validated
Probab=93.92 E-value=0.4 Score=50.25 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=22.2
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
...++|.|..|+|||||++.++...
T Consensus 163 Gqri~I~G~sG~GKStLl~~I~~~~ 187 (440)
T PRK06820 163 GQRIGIFAAAGVGKSTLLGMLCADS 187 (440)
T ss_pred CCEEEEECCCCCChHHHHHHHhccC
Confidence 5689999999999999999888754
No 411
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=93.91 E-value=0.13 Score=51.45 Aligned_cols=87 Identities=16% Similarity=0.229 Sum_probs=55.7
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccCC-----------CCcc--
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRDE-----------SMIP-- 248 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~-----------~~~~-- 248 (553)
..-||+.|-+|+|||.|.+++.+.+.........+..+++-+.. -..+..++...-...+ +...
T Consensus 147 GgKiGLFGGAGVGKTVl~~ELI~Nia~~h~g~SVFaGvGERtRE---GndLy~Em~es~vl~ktalv~gQMNEpPGaR~R 223 (468)
T COG0055 147 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTRE---GNDLYHEMKESGVLDKTALVFGQMNEPPGARMR 223 (468)
T ss_pred CceeeeeccCCccceeeHHHHHHHHHHHcCCeEEEEeccccccc---hHHHHHHHHhcCCCCceeEEEeecCCCCcceee
Confidence 56899999999999999999999888777776666667665443 3455555554311110 0000
Q ss_pred ---cHHHHHHHhc---CCCeEEEEcCCCC
Q 037613 249 ---DIDLHFKRLS---RRKVLVVFDDVTC 271 (553)
Q Consensus 249 ---~~~~l~~~L~---~kr~LlVLDdv~~ 271 (553)
.--.+.++++ ++.+|+.+||+..
T Consensus 224 ValtGlT~AEyfRD~~gqdVLlFIDNIfR 252 (468)
T COG0055 224 VALTGLTMAEYFRDEEGQDVLLFIDNIFR 252 (468)
T ss_pred ehhhhhhHHHHhhcccCCeEEEEehhhhH
Confidence 0012233443 5789999999953
No 412
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.90 E-value=0.19 Score=52.46 Aligned_cols=86 Identities=19% Similarity=0.156 Sum_probs=48.2
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccC--------CCCc------
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRD--------ESMI------ 247 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~--------~~~~------ 247 (553)
...++|.|..|+|||||++.++...... ..++.. .+ .....+..+....+..-... ..+.
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~~~--~gvi~~-iG---er~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~ 213 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTDAD--VVVIAL-VG---ERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQ 213 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCCCC--EEEEEE-Ee---eechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHH
Confidence 5789999999999999999888765432 222221 11 11123444444333321111 0010
Q ss_pred --ccHHHHHHHh--cCCCeEEEEcCCCChH
Q 037613 248 --PDIDLHFKRL--SRRKVLVVFDDVTCFN 273 (553)
Q Consensus 248 --~~~~~l~~~L--~~kr~LlVLDdv~~~~ 273 (553)
.....+.+++ +++.+||++||+....
T Consensus 214 a~~~a~~iAEyfrd~G~~Vll~~DslTr~A 243 (418)
T TIGR03498 214 AAYTATAIAEYFRDQGKDVLLLMDSVTRFA 243 (418)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHHH
Confidence 1122344444 4789999999997654
No 413
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.89 E-value=0.066 Score=55.88 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=23.7
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
..+.++|++|+|||+||+.++......|
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf 136 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVPF 136 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCc
Confidence 5689999999999999999998764433
No 414
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=93.89 E-value=0.05 Score=49.87 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.4
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhc
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.+++|+|+.|+|||||++.++....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998654
No 415
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.86 E-value=0.05 Score=45.93 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=19.3
Q ss_pred EEEeecCCCchHHHHHHHHhh
Q 037613 185 LAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~~ 205 (553)
|.|+|..|+|||||.+.+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999999973
No 416
>PRK14532 adenylate kinase; Provisional
Probab=93.85 E-value=0.045 Score=50.70 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=20.0
Q ss_pred EEEeecCCCchHHHHHHHHhhh
Q 037613 185 LAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~~~ 206 (553)
|.|.|++|+||||+|+.++++.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7889999999999999998764
No 417
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.85 E-value=0.045 Score=50.85 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=20.2
Q ss_pred EEEeecCCCchHHHHHHHHhhh
Q 037613 185 LAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~~~ 206 (553)
|.|.|++|+||||+|+.++++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999863
No 418
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.83 E-value=0.12 Score=47.89 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=22.5
Q ss_pred EEEEeecCCCchHHHHHHHHhhhcC
Q 037613 184 LLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
+|+|.|+.|+||||+++.+++.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987654
No 419
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=93.81 E-value=0.18 Score=53.36 Aligned_cols=87 Identities=21% Similarity=0.188 Sum_probs=50.7
Q ss_pred cCEEEEeecCCCchHHHH-HHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccC--------CCCc-----
Q 037613 182 APLLAIWGIGGIGKTTIA-RATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRD--------ESMI----- 247 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA-~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~--------~~~~----- 247 (553)
-..++|.|..|+|||||| ..+.++.. -+..+.+..+++-. ..+..+.+.+...-... ..+.
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~q~~--~dv~~V~~~IGeR~---rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~ 236 (497)
T TIGR03324 162 GQRELILGDRQTGKTAIAIDTILNQKG--RNVLCIYCAIGQRA---SAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQY 236 (497)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHHhcC--CCcEEEEEEeccCc---HHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHH
Confidence 578999999999999997 57777643 34423333343322 33555555555431111 0110
Q ss_pred ---ccHHHHHHHh--cCCCeEEEEcCCCChH
Q 037613 248 ---PDIDLHFKRL--SRRKVLVVFDDVTCFN 273 (553)
Q Consensus 248 ---~~~~~l~~~L--~~kr~LlVLDdv~~~~ 273 (553)
.....+.+++ +++.+|||+||+....
T Consensus 237 ~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~A 267 (497)
T TIGR03324 237 IAPYAATSIGEHFMEQGRDVLIVYDDLTQHA 267 (497)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcChhHHH
Confidence 1122344444 5789999999997654
No 420
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=93.79 E-value=0.68 Score=49.39 Aligned_cols=47 Identities=36% Similarity=0.437 Sum_probs=39.8
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhh
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
|...+++||-+.-...|...+.. ...-...|+-|+||||+|+-++..
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~Aka 61 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKA 61 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHH
Confidence 34456789999999999998877 556678999999999999999974
No 421
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=93.79 E-value=0.1 Score=50.05 Aligned_cols=35 Identities=26% Similarity=0.280 Sum_probs=26.7
Q ss_pred CEEEEeec-CCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 183 PLLAIWGI-GGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 183 ~vi~I~G~-gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
++|+|+|+ ||+||||++..++.-+...=..++-|+
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID 37 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWALARLGESVLAID 37 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 58999997 999999999999986555433445554
No 422
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=93.79 E-value=0.23 Score=50.51 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=30.4
Q ss_pred hhHHhhccc----cCEEEEeecCCCchHHHHHHHHhhhc--CC---C-CceEEEE
Q 037613 173 VAIESLLSA----APLLAIWGIGGIGKTTIARATFDKIS--SD---F-EGSCFLE 217 (553)
Q Consensus 173 ~~l~~~L~~----~~vi~I~G~gGiGKTtLA~~v~~~~~--~~---F-~~~~~~~ 217 (553)
..+..+|.. ..++-|+|.+|+|||+||..++-... .. - ..++|++
T Consensus 110 ~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyId 164 (342)
T PLN03186 110 RELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYID 164 (342)
T ss_pred HHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEE
Confidence 344444444 67888999999999999988775322 11 1 2567776
No 423
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=93.79 E-value=0.57 Score=41.04 Aligned_cols=51 Identities=18% Similarity=0.091 Sum_probs=31.7
Q ss_pred HHHHHHHHhccceeEeecCCccchhhhHHHHHHHHHhhhhcCCeEEeEEeeeC
Q 037613 30 QSLVNAIEASTISVIIFSEGYASSRWCLDELLKILECKREYVQIVIPVFYRVD 82 (553)
Q Consensus 30 ~~~~~ai~~s~~~ivv~S~~y~~S~wcl~EL~~i~~~~~~~~~~vlPvfy~v~ 82 (553)
.++.++|+++++.+.|+.-....+.+. .++...+.... .+..++-|+-|.|
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~-~~k~~iivlNK~D 53 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD-PRKKNILLLNKAD 53 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc-CCCcEEEEEechh
Confidence 467899999999999999766555442 24444443321 2334555555444
No 424
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.79 E-value=0.093 Score=52.81 Aligned_cols=91 Identities=21% Similarity=0.141 Sum_probs=53.5
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccCCCCcccHHHHHHHhcCCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRDESMIPDIDLHFKRLSRRK 261 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr 261 (553)
...+.|+|..|.|||||++++...+.... ..+.+.+..+......+...+. ..............+.+...|+..+
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~Lr~~p 219 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVHLF---YSKGGQGLAKVTPKDLLQSCLRMRP 219 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEEEE---ecCCCCCcCccCHHHHHHHHhcCCC
Confidence 77999999999999999999987654432 2334443333211100000000 0000000112345667777888888
Q ss_pred eEEEEcCCCChHhHH
Q 037613 262 VLVVFDDVTCFNQIE 276 (553)
Q Consensus 262 ~LlVLDdv~~~~~l~ 276 (553)
=.|++|.+...+.++
T Consensus 220 d~ii~gE~r~~e~~~ 234 (308)
T TIGR02788 220 DRIILGELRGDEAFD 234 (308)
T ss_pred CeEEEeccCCHHHHH
Confidence 899999998766544
No 425
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.76 E-value=0.064 Score=54.32 Aligned_cols=48 Identities=25% Similarity=0.250 Sum_probs=37.9
Q ss_pred CCCCCCccchhhhHhhHHhhcc-c-cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 159 PHNNDRLVGVESRVVAIESLLS-A-APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~-~-~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
|.+...++|.++.++.+.-.+. . ..-+.+.|..|+||||+|+.+.+-+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 4556778999998887775442 2 4569999999999999999998743
No 426
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=93.74 E-value=0.045 Score=50.32 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.6
Q ss_pred EEEEeecCCCchHHHHHHHHh
Q 037613 184 LLAIWGIGGIGKTTIARATFD 204 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (553)
+|+|+|+.|+||||+|+.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999887
No 427
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.74 E-value=0.057 Score=50.00 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.3
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.++|.|+|++|+|||||++.+..+.
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4689999999999999999998864
No 428
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.74 E-value=0.047 Score=49.31 Aligned_cols=21 Identities=33% Similarity=0.352 Sum_probs=18.0
Q ss_pred EEEeecCCCchHHHHHHHHhh
Q 037613 185 LAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~~ 205 (553)
|+|+|..|+|||||++.++..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999977
No 429
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=0.044 Score=58.13 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=25.6
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
..=|.+||++|+|||-||++|+++-.-+|
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF 573 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF 573 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce
Confidence 45688999999999999999999877766
No 430
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.71 E-value=0.065 Score=51.68 Aligned_cols=23 Identities=30% Similarity=0.474 Sum_probs=19.1
Q ss_pred EeecCCCchHHHHHHHHhhhcCC
Q 037613 187 IWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 187 I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
|+||+|+||||+++.+.+-....
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~ 23 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESN 23 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999865544
No 431
>PRK14531 adenylate kinase; Provisional
Probab=93.70 E-value=0.056 Score=49.91 Aligned_cols=24 Identities=29% Similarity=0.202 Sum_probs=21.5
Q ss_pred CEEEEeecCCCchHHHHHHHHhhh
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..|.|.|++|+||||+|+.++++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999875
No 432
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.69 E-value=0.073 Score=48.36 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=22.0
Q ss_pred CEEEEeecCCCchHHHHHHHHhhh
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.++.|.|++|+|||||+++++++.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 578999999999999999999876
No 433
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.69 E-value=0.09 Score=49.49 Aligned_cols=26 Identities=46% Similarity=0.656 Sum_probs=22.0
Q ss_pred EEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 184 LLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
.|+|+|-||+||||+|..++.++.+.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~ 27 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSK 27 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhc
Confidence 58999999999999999977765544
No 434
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=93.69 E-value=0.16 Score=53.22 Aligned_cols=86 Identities=13% Similarity=0.099 Sum_probs=48.7
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccC--------CCCc------
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRD--------ESMI------ 247 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~--------~~~~------ 247 (553)
...++|+|..|+|||||++.+...... +..++.. + ......+..+...+...-... ..+.
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~~~--dv~V~g~-I---g~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~ 241 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFTEA--DIIVVGL-I---GERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLR 241 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC--CEEEEEE-e---CcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHH
Confidence 678999999999999999998864321 2222221 2 222133445554444331111 0010
Q ss_pred --ccHHHHHHHh--cCCCeEEEEcCCCChH
Q 037613 248 --PDIDLHFKRL--SRRKVLVVFDDVTCFN 273 (553)
Q Consensus 248 --~~~~~l~~~L--~~kr~LlVLDdv~~~~ 273 (553)
.....+.+++ +++.+||++||+....
T Consensus 242 a~~~a~aiAEyfrd~G~~VLl~~DslTR~A 271 (451)
T PRK05688 242 AAMYCTRIAEYFRDKGKNVLLLMDSLTRFA 271 (451)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecchhHHH
Confidence 1122334444 5789999999997654
No 435
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=93.68 E-value=0.43 Score=49.67 Aligned_cols=99 Identities=21% Similarity=0.225 Sum_probs=61.7
Q ss_pred ccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhcCCCCce-EEEEechhhhcccCCHHHHHHHHHHhh
Q 037613 165 LVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKISSDFEGS-CFLENVREESQRLGGLACLRQKLLSNL 240 (553)
Q Consensus 165 ~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~-~~~~~~~~~s~~~~~~~~l~~~ll~~l 240 (553)
..|...-...|-++... ...|.+-|.+|+||||+|-.++..+..+++.. .++. .. -+..++...++...
T Consensus 176 ~~Gi~tgf~~LD~~t~G~~~~dLii~AaRP~mGKTafalnia~n~a~~~~~~v~iFS------LE-M~~eql~~R~Ls~~ 248 (435)
T COG0305 176 LIGVPTGFTDLDEITSGFRPGDLIIVAARPGMGKTALALNIALNAAADGRKPVAIFS------LE-MSEEQLVMRLLSSE 248 (435)
T ss_pred CcccccCchhhHHHhcCCccCCEEEEccCCCCChHHHHHHHHHHHHHhcCCCeEEEE------cc-CCHHHHHHHhhccc
Confidence 55655555555555544 66888889999999999999998776666543 3332 22 55677777777766
Q ss_pred ccCCCC-c----------ccHHHHHHHhcCCCeEEEEcCCCCh
Q 037613 241 FRDESM-I----------PDIDLHFKRLSRRKVLVVFDDVTCF 272 (553)
Q Consensus 241 ~~~~~~-~----------~~~~~l~~~L~~kr~LlVLDdv~~~ 272 (553)
..-+.. . +........++..+ |.+||....
T Consensus 249 s~v~~~kirtg~l~~~d~~~l~~a~~~l~~~~--i~IdD~~~~ 289 (435)
T COG0305 249 SGIESSKLRTGRLSDDEWERLIKAASELSEAP--IFIDDTPGL 289 (435)
T ss_pred cccchhccccccccHHHHHHHHHHHHHHhhCC--eeecCCCcC
Confidence 543211 1 22233344556666 777777543
No 436
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.68 E-value=0.057 Score=48.39 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=24.8
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
++++|+|..|+|||||..++..+.+.+-
T Consensus 3 ~Il~ivG~k~SGKTTLie~lv~~L~~~G 30 (161)
T COG1763 3 KILGIVGYKNSGKTTLIEKLVRKLKARG 30 (161)
T ss_pred cEEEEEecCCCChhhHHHHHHHHHHhCC
Confidence 6899999999999999999998776653
No 437
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.67 E-value=0.06 Score=46.87 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=22.6
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+++|+|..|+|||||.+.++....
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCEEEEEccCCCccccceeeeccccc
Confidence 56899999999999999999987543
No 438
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.64 E-value=0.11 Score=51.75 Aligned_cols=53 Identities=26% Similarity=0.283 Sum_probs=40.3
Q ss_pred CCCCCccchhhhHh---hHHhhccc----cCEEEEeecCCCchHHHHHHHHhhhcCCCCc
Q 037613 160 HNNDRLVGVESRVV---AIESLLSA----APLLAIWGIGGIGKTTIARATFDKISSDFEG 212 (553)
Q Consensus 160 ~~~~~~vGr~~~~~---~l~~~L~~----~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~ 212 (553)
...+.+||..+..+ -+.++... .+.|.|+|++|.|||+||..+++.+...-+.
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF 95 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPF 95 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCc
Confidence 34567999776554 34444444 7899999999999999999999998876443
No 439
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.63 E-value=0.2 Score=46.12 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=23.5
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..++.|.|.+|+||||+|+.+.....
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999998754
No 440
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.60 E-value=0.058 Score=44.73 Aligned_cols=22 Identities=36% Similarity=0.353 Sum_probs=19.9
Q ss_pred cCEEEEeecCCCchHHHHHHHH
Q 037613 182 APLLAIWGIGGIGKTTIARATF 203 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~ 203 (553)
...++|.|+.|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3579999999999999999976
No 441
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=93.59 E-value=0.087 Score=44.96 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=25.2
Q ss_pred HHhhccccCEEEEeecCCCchHHHHHHHHhhh
Q 037613 175 IESLLSAAPLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 175 l~~~L~~~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
+.+.|....+|.+.|.=|+||||+++.+++.+
T Consensus 8 l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 8 LAQILKPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp HHHHHSS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHhCCCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 44444447799999999999999999999843
No 442
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.59 E-value=0.073 Score=51.13 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=23.1
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
..+|||+|++|+|||||..++...+...
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred ceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 6799999999999999999988865543
No 443
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.57 E-value=0.11 Score=50.26 Aligned_cols=36 Identities=14% Similarity=0.095 Sum_probs=28.3
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..++.|.|.+|+|||++|.++.......=..++|+.
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 679999999999999999987765334445666775
No 444
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.57 E-value=0.067 Score=53.79 Aligned_cols=48 Identities=19% Similarity=0.315 Sum_probs=41.7
Q ss_pred CCCccchhhhHhhHHhhccc--------cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 162 NDRLVGVESRVVAIESLLSA--------APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~--------~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
...|+|+++.++++.+.+.. -+++.+.|+.|.||||||..+-+-+...
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 35799999999999998865 6899999999999999999988865554
No 445
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.55 E-value=0.061 Score=53.94 Aligned_cols=26 Identities=38% Similarity=0.503 Sum_probs=22.0
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
+++.+.|-||+||||+|.+.+-....
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~ 27 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALAR 27 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhh
Confidence 68899999999999999888765444
No 446
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.52 E-value=0.22 Score=52.50 Aligned_cols=89 Identities=11% Similarity=0.041 Sum_probs=52.1
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC--CC-ceEEEEechhhhcccCCHHHHHHHHHHhhccC--------CCCc---
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD--FE-GSCFLENVREESQRLGGLACLRQKLLSNLFRD--------ESMI--- 247 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~--F~-~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~--------~~~~--- 247 (553)
-..++|.|-.|+|||||+..+++....+ +. .++.+..+++-. ..+..+...+...-... ..+.
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERg---rEv~efi~~~~~~~~l~rtvvv~atsd~p~~~ 217 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITY---EEANFFMKDFEETGALERAVVFLNLADDPAVE 217 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccc---hHHHHHHHHHHhcCCcceEEEEEECCCCCHHH
Confidence 5789999999999999999999854321 21 233333233321 34555666555332111 0000
Q ss_pred -----ccHHHHHHHhc---CCCeEEEEcCCCChH
Q 037613 248 -----PDIDLHFKRLS---RRKVLVVFDDVTCFN 273 (553)
Q Consensus 248 -----~~~~~l~~~L~---~kr~LlVLDdv~~~~ 273 (553)
.....+.++++ ++++||++||+....
T Consensus 218 R~~a~~~a~tiAEyfr~d~G~~VLli~DslTR~A 251 (458)
T TIGR01041 218 RIVTPRMALTAAEYLAFEKDMHVLVILTDMTNYC 251 (458)
T ss_pred HHHHHHHHHHHHHHHHHccCCcEEEEEcChhHHH
Confidence 12233555555 688999999997653
No 447
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.51 E-value=0.32 Score=49.05 Aligned_cols=34 Identities=26% Similarity=0.184 Sum_probs=26.5
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
-..++|.|..|+|||+|++++++.... +.++++-
T Consensus 157 Gqr~~I~G~~G~GKT~L~~~Iak~~~~--dvvVyv~ 190 (369)
T cd01134 157 GGTAAIPGPFGCGKTVIQQSLSKYSNS--DIVIYVG 190 (369)
T ss_pred CCEEEEECCCCCChHHHHHHHHhCCCC--CEEEEEE
Confidence 678999999999999999999986332 3455443
No 448
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=93.51 E-value=0.068 Score=49.36 Aligned_cols=29 Identities=28% Similarity=0.489 Sum_probs=24.2
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCCCC
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSDFE 211 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~F~ 211 (553)
+.|.|+|+.|+|||||+..+.+.....|.
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~ 31 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPDAFE 31 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCCcceE
Confidence 67899999999999999999887544443
No 449
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.51 E-value=0.07 Score=45.43 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.4
Q ss_pred cCEEEEeecCCCchHHHHHHHHhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
+-|++.+|.+|+|||.+|+.+++.
T Consensus 53 pLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 53 PLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred CEEEEeecCCCCcHHHHHHHHHHH
Confidence 568899999999999999988875
No 450
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=93.50 E-value=0.21 Score=53.22 Aligned_cols=87 Identities=18% Similarity=0.185 Sum_probs=50.2
Q ss_pred cCEEEEeecCCCchHHHH-HHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccC--------CCCc-----
Q 037613 182 APLLAIWGIGGIGKTTIA-RATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRD--------ESMI----- 247 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA-~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~--------~~~~----- 247 (553)
-..++|.|..|+|||||| ..+.++. +.+..|.+..+++-. ..+..+...+...-... ..+.
T Consensus 161 GQr~~I~g~~g~GKt~Lal~~i~~~~--~~dv~~V~~~IGer~---rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~ 235 (501)
T TIGR00962 161 GQRELIIGDRQTGKTAVAIDTIINQK--DSDVYCVYVAIGQKA---STVAQVVRKLEEHGAMDYTIVVAATASDSASLQY 235 (501)
T ss_pred CCEEEeecCCCCCccHHHHHHHHhhc--CCCeEEEEEEccCCh---HHHHHHHHHHHhcCccceeEEEEecCCCCHHHHH
Confidence 568999999999999996 5666653 345543333343322 33555666555432111 1110
Q ss_pred ---ccHHHHHHHh--cCCCeEEEEcCCCChH
Q 037613 248 ---PDIDLHFKRL--SRRKVLVVFDDVTCFN 273 (553)
Q Consensus 248 ---~~~~~l~~~L--~~kr~LlVLDdv~~~~ 273 (553)
.....+.+++ +++.+|||+||+....
T Consensus 236 ~a~~~a~aiAEyfrd~G~~VLlv~Ddltr~A 266 (501)
T TIGR00962 236 LAPYTGCTMAEYFRDNGKHALIIYDDLSKHA 266 (501)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEecchHHHH
Confidence 1112233333 4789999999997653
No 451
>PRK01184 hypothetical protein; Provisional
Probab=93.50 E-value=0.058 Score=49.75 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=18.4
Q ss_pred CEEEEeecCCCchHHHHHHHHhh
Q 037613 183 PLLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
.+|+|+|++|+||||+|+ ++++
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~ 23 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IARE 23 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHH
Confidence 479999999999999987 4443
No 452
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.49 E-value=0.61 Score=47.26 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.1
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
...+.++|+.|+||||+|..+++.+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~l 46 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAAL 46 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHH
Confidence 5678899999999999999999854
No 453
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.48 E-value=0.082 Score=51.28 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.1
Q ss_pred EEEEeecCCCchHHHHHHHHhhhcC
Q 037613 184 LLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
+|+|.|.+|+||||+|+++.+.+..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999986654
No 454
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.46 E-value=0.12 Score=57.37 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=24.2
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
.+-|.++|++|+|||++|+.++.+....|
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~~~~f 213 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPF 213 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 34589999999999999999998765443
No 455
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=93.46 E-value=0.24 Score=49.98 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=21.2
Q ss_pred cCEEEEeecCCCchHHHHHHHHh
Q 037613 182 APLLAIWGIGGIGKTTIARATFD 204 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (553)
..++.|+|.+|+|||||+..++.
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~ 118 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAV 118 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHH
Confidence 67899999999999999998875
No 456
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.46 E-value=0.3 Score=50.91 Aligned_cols=86 Identities=14% Similarity=0.117 Sum_probs=48.3
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccC--------CCCc------
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRD--------ESMI------ 247 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~--------~~~~------ 247 (553)
...++|.|..|+|||||...+...... +..++.. ++ .....+..+...+...-... ..+.
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~~~--~~~vi~~-iG---er~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~ 210 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYTEA--DVVVVGL-IG---ERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLR 210 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC--CEEEEEE-Ee---cChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHH
Confidence 568999999999999999988875443 2333322 21 11122444444443321110 0110
Q ss_pred --ccHHHHHHHh--cCCCeEEEEcCCCChH
Q 037613 248 --PDIDLHFKRL--SRRKVLVVFDDVTCFN 273 (553)
Q Consensus 248 --~~~~~l~~~L--~~kr~LlVLDdv~~~~ 273 (553)
.....+.+++ +++.+|+++||+....
T Consensus 211 a~~~a~tiAEyfr~~G~~Vll~~Dsltr~A 240 (411)
T TIGR03496 211 AAFYATAIAEYFRDQGKDVLLLMDSLTRFA 240 (411)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeChHHHH
Confidence 1122334444 5789999999997553
No 457
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.45 E-value=0.21 Score=50.04 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=29.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
.+++-|+|+.|+||||||..+..+....-..++|++
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID 88 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFID 88 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcccceeEEec
Confidence 679999999999999999998887655555677886
No 458
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=93.45 E-value=0.093 Score=47.17 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=24.0
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
++++|+|..|+|||||+..+...+...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999876654
No 459
>PLN02165 adenylate isopentenyltransferase
Probab=93.43 E-value=0.065 Score=53.76 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=23.6
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+++|+|+.|+||||||..++..+.
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 67999999999999999999998754
No 460
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=93.42 E-value=0.17 Score=52.82 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=22.2
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
...++|.|..|+|||||++.+....
T Consensus 155 GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 155 GQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred ceEEEEECCCCCCccHHHHHHhccc
Confidence 6789999999999999999888744
No 461
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.41 E-value=0.068 Score=47.50 Aligned_cols=24 Identities=29% Similarity=0.655 Sum_probs=21.5
Q ss_pred CEEEEeecCCCchHHHHHHHHhhh
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.++.|+|.+|+||||+.+.+....
T Consensus 5 kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 5 KVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred eEEEEEcCCCCChHHHHHHHHHHH
Confidence 689999999999999998887765
No 462
>PLN02924 thymidylate kinase
Probab=93.40 E-value=0.25 Score=47.01 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=24.5
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
...|+|-|..|+||||+|+.+++.+...
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l~~~ 43 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFLKGL 43 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4579999999999999999999976654
No 463
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.38 E-value=0.049 Score=32.44 Aligned_cols=20 Identities=10% Similarity=0.273 Sum_probs=12.8
Q ss_pred CCCccEEEcCCCCcccCCCC
Q 037613 531 QKKLVVIEMPHSNIQQFWDG 550 (553)
Q Consensus 531 L~~L~~L~l~~s~i~~lp~~ 550 (553)
|.+|++|+|.+++|+.+|.+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35666666666666666654
No 464
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.38 E-value=0.049 Score=32.44 Aligned_cols=20 Identities=10% Similarity=0.273 Sum_probs=12.8
Q ss_pred CCCccEEEcCCCCcccCCCC
Q 037613 531 QKKLVVIEMPHSNIQQFWDG 550 (553)
Q Consensus 531 L~~L~~L~l~~s~i~~lp~~ 550 (553)
|.+|++|+|.+++|+.+|.+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35666666666666666654
No 465
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=93.34 E-value=0.092 Score=46.62 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=21.8
Q ss_pred EEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 184 LLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
++++.|.+|+||||++..+.......
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~ 26 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRAR 26 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 47899999999999999998865433
No 466
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=93.34 E-value=0.07 Score=50.70 Aligned_cols=25 Identities=40% Similarity=0.611 Sum_probs=22.4
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhc
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.+|+|.|+.|+||||+|+.++.++.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998654
No 467
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.32 E-value=0.14 Score=53.52 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=23.0
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
...++|.|..|+|||||++.++....
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~~ 180 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAPD 180 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCCC
Confidence 67899999999999999999987543
No 468
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=93.32 E-value=0.26 Score=51.98 Aligned_cols=87 Identities=15% Similarity=0.147 Sum_probs=49.9
Q ss_pred cCEEEEeecCCCchHHHHH-HHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccC--------CCCc-----
Q 037613 182 APLLAIWGIGGIGKTTIAR-ATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRD--------ESMI----- 247 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~-~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~--------~~~~----- 247 (553)
-..++|.|..|+||||||. .+.++- .-+..|.+..+++-. ..+..+...+...-... ..+.
T Consensus 141 GQR~~I~g~~g~GKt~Lal~~I~~q~--~~dv~cV~~~IGer~---rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~ 215 (485)
T CHL00059 141 GQRELIIGDRQTGKTAVATDTILNQK--GQNVICVYVAIGQKA---SSVAQVVTTLQERGAMEYTIVVAETADSPATLQY 215 (485)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHhcc--cCCeEEEEEEecCCc---hHHHHHHHHhhcccchhceEEEEeCCCCCHHHHH
Confidence 5689999999999999964 465542 335554444444322 34555665555431111 0110
Q ss_pred ---ccHHHHHHHh--cCCCeEEEEcCCCChH
Q 037613 248 ---PDIDLHFKRL--SRRKVLVVFDDVTCFN 273 (553)
Q Consensus 248 ---~~~~~l~~~L--~~kr~LlVLDdv~~~~ 273 (553)
.....+.+++ +++.+|||+||+....
T Consensus 216 ~ap~~a~aiAEyfr~~G~~VLlv~DdlTr~A 246 (485)
T CHL00059 216 LAPYTGAALAEYFMYRGRHTLIIYDDLSKQA 246 (485)
T ss_pred HHHHHHhhHHHHHHHcCCCEEEEEcChhHHH
Confidence 0112233333 4789999999997654
No 469
>PRK12338 hypothetical protein; Provisional
Probab=93.28 E-value=0.064 Score=53.56 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.4
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
+.+|.|.|.+|+||||+|++++.+.
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHC
Confidence 4589999999999999999999864
No 470
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.27 E-value=0.6 Score=45.92 Aligned_cols=36 Identities=19% Similarity=0.137 Sum_probs=27.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC-CCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD-FEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~ 217 (553)
..++.|.|.+|+||||++.+++...... =..++|+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 5689999999999999999998865444 23455664
No 471
>PLN02348 phosphoribulokinase
Probab=93.26 E-value=0.066 Score=54.81 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=24.4
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
..+|||.|.+|+||||+|+.+.+.+..
T Consensus 49 p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 49 TVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 679999999999999999999997654
No 472
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=93.26 E-value=0.063 Score=53.78 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.4
Q ss_pred CEEEEeecCCCchHHHHHHHHhhh
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.+|.+.|++|+||||+|+.+.++.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 468889999999999999998865
No 473
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.26 E-value=0.13 Score=49.23 Aligned_cols=36 Identities=22% Similarity=0.145 Sum_probs=27.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
...+.|.|.+|+||||||.+++......-..++|+.
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 678999999999999999987764333344567775
No 474
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.24 E-value=0.068 Score=50.38 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.3
Q ss_pred cCEEEEeecCCCchHHHHHHHHhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
.+.+.|+|++|+|||||++.+.+.
T Consensus 13 ~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 13 PLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CeEEEEECcCCCCHHHHHHHHHhc
Confidence 568899999999999999998754
No 475
>PRK02496 adk adenylate kinase; Provisional
Probab=93.24 E-value=0.067 Score=49.34 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=20.8
Q ss_pred EEEEeecCCCchHHHHHHHHhhh
Q 037613 184 LLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.+.|.|++|+||||+|+.++...
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 476
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.23 E-value=0.099 Score=49.31 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=24.1
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
+++|+++|..|+|||||..++.++...
T Consensus 22 ~~~i~~~G~~gsGKTTli~~l~~~~~~ 48 (207)
T TIGR00073 22 LVVLNFMSSPGSGKTTLIEKLIDNLKD 48 (207)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 789999999999999999999886543
No 477
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=93.21 E-value=0.085 Score=54.56 Aligned_cols=31 Identities=32% Similarity=0.420 Sum_probs=26.7
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEG 212 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~ 212 (553)
..+|+|+|..|+|||||+..+..+++.++..
T Consensus 5 ~~~i~i~G~~gsGKTTl~~~l~~~l~~~~~V 35 (369)
T PRK14490 5 PFEIAFCGYSGSGKTTLITALVRRLSERFSV 35 (369)
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHHHhhCceE
Confidence 4589999999999999999999988776443
No 478
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.21 E-value=0.21 Score=53.46 Aligned_cols=103 Identities=14% Similarity=0.151 Sum_probs=62.5
Q ss_pred cchhh-hHhhHHhhccc-cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhcc-
Q 037613 166 VGVES-RVVAIESLLSA-APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFR- 242 (553)
Q Consensus 166 vGr~~-~~~~l~~~L~~-~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~- 242 (553)
.|... .++.+..++.. ..++.|+|+.|.||||+...+.+.+...-...+-+.+.-|... .++ .+..-
T Consensus 224 Lg~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~--~~~--------~q~~v~ 293 (486)
T TIGR02533 224 LGMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQI--EGI--------GQIQVN 293 (486)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeec--CCC--------ceEEEc
Confidence 34433 34455555544 6799999999999999999888766543223333432221110 111 01100
Q ss_pred CCCCcccHHHHHHHhcCCCeEEEEcCCCChHhHHHh
Q 037613 243 DESMIPDIDLHFKRLSRRKVLVVFDDVTCFNQIESF 278 (553)
Q Consensus 243 ~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~l~~l 278 (553)
..........++..|+..+=.|++..+.+.+-....
T Consensus 294 ~~~g~~f~~~lr~~LR~dPDvI~vGEiRd~eta~~a 329 (486)
T TIGR02533 294 PKIGLTFAAGLRAILRQDPDIIMVGEIRDLETAQIA 329 (486)
T ss_pred cccCccHHHHHHHHHhcCCCEEEEeCCCCHHHHHHH
Confidence 111225567888899999999999999988765443
No 479
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=93.19 E-value=0.32 Score=51.21 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=22.7
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
...++|.|..|+|||||.+.+.....
T Consensus 163 Gq~~~I~G~sG~GKStLl~~I~~~~~ 188 (440)
T TIGR01026 163 GQRIGIFAGSGVGKSTLLGMIARNTE 188 (440)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56899999999999999999887643
No 480
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.18 E-value=0.85 Score=48.50 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=23.0
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+++++|+.|+||||++..++....
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH
Confidence 56999999999999999999997653
No 481
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=93.17 E-value=1 Score=48.59 Aligned_cols=91 Identities=15% Similarity=0.064 Sum_probs=52.0
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhh----ccC-----------CCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNL----FRD-----------ESM 246 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l----~~~-----------~~~ 246 (553)
-..++|-|..|+|||+|+.++++.. +-+.++++- +++-. ..+..++.++-... +.. ...
T Consensus 227 Gq~~~Ipg~~G~GKTvl~~~iak~a--~adivVyvg-~GERg---~E~~e~l~ef~~l~dp~~g~~~m~RTvlVanTSn~ 300 (586)
T PRK04192 227 GGTAAIPGPFGSGKTVTQHQLAKWA--DADIVIYVG-CGERG---NEMTEVLEEFPELIDPKTGRPLMERTVLIANTSNM 300 (586)
T ss_pred CCeEEEecCCCCCHHHHHHHHHhcC--CCCEEEEEE-cCcCh---HHHHHHHHHHHhhcccccccccceeEEEEEECCCC
Confidence 5679999999999999999998853 234555554 33221 23445555443211 100 000
Q ss_pred c--------ccHHHHHHHh--cCCCeEEEEcCCCChH-hHHHh
Q 037613 247 I--------PDIDLHFKRL--SRRKVLVVFDDVTCFN-QIESF 278 (553)
Q Consensus 247 ~--------~~~~~l~~~L--~~kr~LlVLDdv~~~~-~l~~l 278 (553)
. ...-.+.+++ .++.+|+++|+..... .+..+
T Consensus 301 Pv~aR~~s~ytgiTiAEYfRd~G~~Vllm~DStSR~AeAlREI 343 (586)
T PRK04192 301 PVAAREASIYTGITIAEYYRDMGYDVLLMADSTSRWAEALREI 343 (586)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHHHHH
Confidence 0 1112233444 3789999999996543 34444
No 482
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=93.15 E-value=0.1 Score=51.66 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=22.1
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
+.|+|+|-||+||||+|..++..+..
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~ 26 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAE 26 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHH
Confidence 57899999999999999988875544
No 483
>PRK14529 adenylate kinase; Provisional
Probab=93.15 E-value=0.37 Score=45.85 Aligned_cols=91 Identities=19% Similarity=0.108 Sum_probs=46.4
Q ss_pred EEEEeecCCCchHHHHHHHHhhhcCC-CCceEEEEechhhhcccCCHHHHHHHHHHhhccCCCCcccHHHHHHHhcCC-C
Q 037613 184 LLAIWGIGGIGKTTIARATFDKISSD-FEGSCFLENVREESQRLGGLACLRQKLLSNLFRDESMIPDIDLHFKRLSRR-K 261 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~k-r 261 (553)
.|.|.|++|+||||+|+.++.++.-. ....-.+ ++.-.....+....++++.. +..-++.-....+.+++... .
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdll---r~~i~~~t~lg~~i~~~i~~-G~lvpdei~~~lv~~~l~~~~~ 77 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIF---REHIGGGTELGKKAKEYIDR-GDLVPDDITIPMILETLKQDGK 77 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhh---hhhccCCChHHHHHHHHHhc-cCcchHHHHHHHHHHHHhccCC
Confidence 37889999999999999999876432 2221111 11101102222223333221 11111113445566666432 4
Q ss_pred eEEEEcCCC-ChHhHHHh
Q 037613 262 VLVVFDDVT-CFNQIESF 278 (553)
Q Consensus 262 ~LlVLDdv~-~~~~l~~l 278 (553)
.-+|||+.- +.+|.+.|
T Consensus 78 ~g~iLDGfPRt~~Qa~~l 95 (223)
T PRK14529 78 NGWLLDGFPRNKVQAEKL 95 (223)
T ss_pred CcEEEeCCCCCHHHHHHH
Confidence 568999984 44554443
No 484
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.14 E-value=0.12 Score=52.39 Aligned_cols=44 Identities=23% Similarity=0.186 Sum_probs=35.2
Q ss_pred CCCccchhhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhh
Q 037613 162 NDRLVGVESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
...+||.++.+..+.-.+.. ..-+.|.|..|+|||||++.+..-
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~ 48 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAAL 48 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHh
Confidence 35689999888777555444 566889999999999999999864
No 485
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.13 E-value=0.069 Score=50.48 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=19.9
Q ss_pred EEEeecCCCchHHHHHHHHhhh
Q 037613 185 LAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 185 i~I~G~gGiGKTtLA~~v~~~~ 206 (553)
|.|.|++|+||||+|+.++.+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998764
No 486
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=93.12 E-value=0.17 Score=47.32 Aligned_cols=38 Identities=24% Similarity=0.402 Sum_probs=28.4
Q ss_pred HhhHHhhccc-cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 172 VVAIESLLSA-APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 172 ~~~l~~~L~~-~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
.+.+...+.. .++..|.|.+|.||||+.+.+.+.+...
T Consensus 7 ~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 7 REAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 3444444444 5789999999999999999988865554
No 487
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=93.12 E-value=0.072 Score=55.44 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=22.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.+.|+|+|..|+||||||+++++..
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999999753
No 488
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.12 E-value=0.078 Score=50.32 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=20.7
Q ss_pred EEEEeecCCCchHHHHHHHHhhh
Q 037613 184 LLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.|.|.|++|+||||+|+.++.+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 489
>PLN02796 D-glycerate 3-kinase
Probab=93.11 E-value=0.075 Score=53.58 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=23.6
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
.-+|+|.|..|+|||||++.+...+..
T Consensus 100 pliIGI~G~sGSGKSTLa~~L~~lL~~ 126 (347)
T PLN02796 100 PLVIGISAPQGCGKTTLVFALVYLFNA 126 (347)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 457999999999999999999987654
No 490
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=93.08 E-value=0.2 Score=47.60 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=23.1
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
+.+|.|-|.+|+||||+|.++++++.
T Consensus 89 p~IILIGGasGVGkStIA~ElA~rLg 114 (299)
T COG2074 89 PLIILIGGASGVGKSTIAGELARRLG 114 (299)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHcC
Confidence 66888999999999999999999753
No 491
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=93.07 E-value=0.027 Score=56.68 Aligned_cols=89 Identities=12% Similarity=0.160 Sum_probs=59.5
Q ss_pred cccccccccCCCcc--ccccChhHhhcC-CCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCC-----CC
Q 037613 455 KSIEGICLDMSKAN--EIRLNPNTFVKM-HKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLK-----SL 525 (553)
Q Consensus 455 ~~~~~i~l~~~~~~--~~~~~~~~~~~~-~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~-----~L 525 (553)
..++.+.+...... ........+..+ ++|+.|+|.+|.+... +...++..+. +.+|++|++++|.+. .+
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~--~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 185 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA--SCEALAKALRANRDLKELNLANNGIGDAGIRAL 185 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch--HHHHHHHHHHhCCCcCEEECcCCCCchHHHHHH
Confidence 44666666544321 112223456677 8999999999876542 3334554553 789999999999877 35
Q ss_pred CCCC-CCCCccEEEcCCCCcc
Q 037613 526 PSNI-NQKKLVVIEMPHSNIQ 545 (553)
Q Consensus 526 P~~i-~L~~L~~L~l~~s~i~ 545 (553)
+..+ .+.+|++|+|++|.+.
T Consensus 186 ~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 186 AEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred HHHHHhCCCCCEEeccCCccC
Confidence 5555 5779999999998875
No 492
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.04 E-value=0.049 Score=57.35 Aligned_cols=66 Identities=12% Similarity=0.190 Sum_probs=46.7
Q ss_pred hhcCCCCcEEEeecccCCCCCCCccccCCCCCCCCeeEEEecCCCCCCCCCCCCCCCccEEEcCCCCcccCCC
Q 037613 477 FVKMHKLRFLKFYNSINGDNRCKVSYLQESPGFAEVRFLHRHGYPLKSLPSNINQKKLVVIEMPHSNIQQFWD 549 (553)
Q Consensus 477 ~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~L~~Lr~L~l~~~~l~~LP~~i~L~~L~~L~l~~s~i~~lp~ 549 (553)
+..|.+|++|+|+++. |..+...-.|..|+.|++.+|+|..++..=.|.+|+.|++.++.+..+..
T Consensus 114 l~~~~~L~~L~ls~N~-------I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNK-------ITKLEGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIEN 179 (414)
T ss_pred hhhhhcchheeccccc-------cccccchhhccchhhheeccCcchhccCCccchhhhcccCCcchhhhhhh
Confidence 5678888888888773 44344322356788888888888777654468888888888887776654
No 493
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.03 E-value=0.12 Score=53.77 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=23.8
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
..+.++|++|+|||++|+.++..+...|
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf 144 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPF 144 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCe
Confidence 5799999999999999999998765444
No 494
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=93.02 E-value=0.073 Score=47.36 Aligned_cols=20 Identities=35% Similarity=0.388 Sum_probs=18.5
Q ss_pred EeecCCCchHHHHHHHHhhh
Q 037613 187 IWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 187 I~G~gGiGKTtLA~~v~~~~ 206 (553)
|.|++|+||||+|+.++++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999974
No 495
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.00 E-value=0.1 Score=52.98 Aligned_cols=46 Identities=28% Similarity=0.235 Sum_probs=37.6
Q ss_pred CCCCCCccchhhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHh
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFD 204 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~ 204 (553)
..+...+||.++.+..|...+.. ..-|.|.|..|+||||+|+.+++
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~ 60 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVD 60 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHH
Confidence 34556799999888887776655 55677999999999999999987
No 496
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=92.99 E-value=0.11 Score=56.60 Aligned_cols=46 Identities=22% Similarity=0.282 Sum_probs=33.8
Q ss_pred CCccchhhhHhhHHhhccc----cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 163 DRLVGVESRVVAIESLLSA----APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~----~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
+..+-|.+-.+.|.++... ..+|.|+|+.|+||||+|+.++.++..
T Consensus 369 P~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred ChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 3455565555555554433 558999999999999999999997754
No 497
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=92.98 E-value=0.088 Score=48.17 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=31.1
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEe
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLEN 218 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~ 218 (553)
..|++-|+.|+|||||..+..+.++++|...+.-.+
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~D 49 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGD 49 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEece
Confidence 589999999999999999999999988887665543
No 498
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.98 E-value=0.12 Score=54.39 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=27.6
Q ss_pred hHhhHHhhccc---------cCEEEEeecCCCchHHHHHHHHhh
Q 037613 171 RVVAIESLLSA---------APLLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 171 ~~~~l~~~L~~---------~~vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
-+.++..||.. .+++.|+|++|+||||-.+.++..
T Consensus 90 KI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLske 133 (634)
T KOG1970|consen 90 KISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKE 133 (634)
T ss_pred hHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHh
Confidence 45556666651 679999999999999999988874
No 499
>PRK08356 hypothetical protein; Provisional
Probab=92.97 E-value=0.075 Score=49.60 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=19.1
Q ss_pred CEEEEeecCCCchHHHHHHHH
Q 037613 183 PLLAIWGIGGIGKTTIARATF 203 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~ 203 (553)
.+|+|+|++|+||||+|+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999994
No 500
>PRK09099 type III secretion system ATPase; Provisional
Probab=92.96 E-value=0.22 Score=52.20 Aligned_cols=87 Identities=15% Similarity=0.143 Sum_probs=49.0
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccC--------CCCc------
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRD--------ESMI------ 247 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~--------~~~~------ 247 (553)
...++|.|..|+|||||++.++...... ..++.. +++.. ..+..+.+.+...-... ..+.
T Consensus 163 Gq~~~I~G~sG~GKTtLl~~ia~~~~~d--~~vi~~-iGer~---~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~ 236 (441)
T PRK09099 163 GQRMGIFAPAGVGKSTLMGMFARGTQCD--VNVIAL-IGERG---REVREFIELILGEDGMARSVVVCATSDRSSIERAK 236 (441)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC--eEEEEE-EccCh---HHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHH
Confidence 6799999999999999999998754332 223222 22111 23444444443321110 0000
Q ss_pred --ccHHHHHHHh--cCCCeEEEEcCCCChHh
Q 037613 248 --PDIDLHFKRL--SRRKVLVVFDDVTCFNQ 274 (553)
Q Consensus 248 --~~~~~l~~~L--~~kr~LlVLDdv~~~~~ 274 (553)
.....+.+++ +++.+|+++||+....+
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~DslTr~A~ 267 (441)
T PRK09099 237 AAYVATAIAEYFRDRGLRVLLMMDSLTRFAR 267 (441)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHHHH
Confidence 1122234444 47899999999976543
Done!