Query 037613
Match_columns 553
No_of_seqs 410 out of 3223
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 03:47:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037613.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037613hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 1.3E-43 4.4E-48 318.3 10.5 151 1-159 24-175 (176)
2 3ozi_A L6TR; plant TIR domain, 100.0 1.4E-42 4.9E-47 316.0 11.5 150 1-156 51-202 (204)
3 2a5y_B CED-4; apoptosis; HET: 100.0 6.7E-38 2.3E-42 339.3 15.6 257 166-429 131-472 (549)
4 3sfz_A APAF-1, apoptotic pepti 100.0 7.7E-34 2.6E-38 336.5 19.8 267 156-428 117-452 (1249)
5 1vt4_I APAF-1 related killer D 100.0 2.1E-32 7.3E-37 301.9 8.3 244 163-421 128-436 (1221)
6 1z6t_A APAF-1, apoptotic prote 100.0 6.2E-31 2.1E-35 288.0 16.4 262 156-424 117-448 (591)
7 3h16_A TIR protein; bacteria T 99.9 9.8E-25 3.4E-29 195.0 1.8 100 1-100 35-135 (154)
8 3ub2_A TOLL/interleukin-1 rece 99.7 1E-19 3.4E-24 160.1 -0.9 115 1-118 24-145 (146)
9 1fyx_A TOLL-like receptor 2; b 99.6 5.7E-17 1.9E-21 143.4 -0.4 83 1-83 19-107 (149)
10 1t3g_A X-linked interleukin-1 99.6 7.1E-16 2.4E-20 137.6 4.4 83 1-83 27-114 (159)
11 2js7_A Myeloid differentiation 99.6 2.4E-16 8.3E-21 140.8 1.2 82 1-82 30-116 (160)
12 2j67_A TOLL like receptor 10; 99.6 2.5E-16 8.4E-21 143.0 0.9 81 1-81 49-134 (178)
13 2qen_A Walker-type ATPase; unk 99.5 1E-12 3.4E-17 133.3 17.9 251 156-422 5-349 (350)
14 2fna_A Conserved hypothetical 99.4 5.9E-12 2E-16 127.9 16.8 252 156-421 6-356 (357)
15 1w5s_A Origin recognition comp 99.2 1.1E-10 3.8E-15 121.1 15.5 246 161-417 20-387 (412)
16 2qby_B CDC6 homolog 3, cell di 99.1 2E-09 7E-14 110.4 20.0 229 163-406 20-339 (384)
17 2qby_A CDC6 homolog 1, cell di 99.0 7.7E-09 2.6E-13 105.9 17.9 107 160-271 17-139 (386)
18 1fnn_A CDC6P, cell division co 98.9 5E-08 1.7E-12 100.1 21.2 106 162-272 16-137 (389)
19 2v1u_A Cell division control p 98.9 7.8E-08 2.7E-12 98.4 20.7 107 161-272 17-142 (387)
20 3j0a_A TOLL-like receptor 5; m 98.9 6.1E-10 2.1E-14 126.5 5.0 81 3-83 687-774 (844)
21 1njg_A DNA polymerase III subu 98.6 4.9E-07 1.7E-11 85.6 12.6 51 159-209 19-72 (250)
22 3e6j_A Variable lymphocyte rec 98.4 5E-07 1.7E-11 85.6 8.2 74 470-550 77-153 (229)
23 2r9u_A Variable lymphocyte rec 98.4 5.3E-07 1.8E-11 81.6 7.9 81 463-550 39-123 (174)
24 3e6j_A Variable lymphocyte rec 98.4 7.4E-07 2.5E-11 84.4 8.3 88 455-551 40-131 (229)
25 2chg_A Replication factor C sm 98.4 1.4E-06 4.9E-11 81.3 9.9 51 158-208 12-64 (226)
26 4b8c_D Glucose-repressible alc 98.3 4.2E-07 1.4E-11 101.1 6.1 83 455-547 247-331 (727)
27 1jbk_A CLPB protein; beta barr 98.3 2.7E-06 9.2E-11 77.3 10.6 47 161-207 20-68 (195)
28 2o6r_A Variable lymphocyte rec 98.3 1.4E-06 4.9E-11 78.7 8.5 87 456-551 29-119 (177)
29 2v9t_B SLIT homolog 2 protein 98.3 1.3E-06 4.6E-11 82.1 8.4 74 470-550 69-146 (220)
30 2v9t_B SLIT homolog 2 protein 98.3 1.2E-06 4.1E-11 82.4 7.8 85 456-549 33-121 (220)
31 2p65_A Hypothetical protein PF 98.3 2.7E-06 9.4E-11 77.0 9.9 48 161-208 20-69 (187)
32 3g39_A Variable lymphocyte rec 98.2 2E-06 6.9E-11 77.3 7.9 79 463-548 36-118 (170)
33 2r9u_A Variable lymphocyte rec 98.2 2.1E-06 7.1E-11 77.6 7.7 63 481-550 33-99 (174)
34 2v70_A SLIT-2, SLIT homolog 2 98.2 2.3E-06 7.9E-11 80.4 8.0 71 470-547 70-144 (220)
35 2o6s_A Variable lymphocyte rec 98.2 3.2E-06 1.1E-10 78.5 8.5 87 455-550 52-142 (208)
36 2wfh_A SLIT homolog 2 protein 98.2 3.7E-06 1.3E-10 77.3 8.8 85 456-550 32-120 (193)
37 2ell_A Acidic leucine-rich nuc 98.2 1.2E-06 4.3E-11 78.3 5.0 73 473-552 87-167 (168)
38 2o6s_A Variable lymphocyte rec 98.2 3.8E-06 1.3E-10 77.9 8.5 64 473-543 92-159 (208)
39 1p9a_G Platelet glycoprotein I 98.2 3.2E-06 1.1E-10 83.1 8.3 76 469-551 112-191 (290)
40 3m19_A Variable lymphocyte rec 98.2 3.7E-06 1.3E-10 80.6 8.4 72 471-549 97-172 (251)
41 1sxj_B Activator 1 37 kDa subu 98.2 4.1E-06 1.4E-10 83.3 9.0 51 158-208 16-68 (323)
42 4b8c_D Glucose-repressible alc 98.2 1.5E-06 5.3E-11 96.6 6.3 88 455-552 224-313 (727)
43 1hqc_A RUVB; extended AAA-ATPa 98.2 3.8E-05 1.3E-09 76.4 15.9 49 159-207 8-63 (324)
44 4g8a_A TOLL-like receptor 4; l 98.2 1.7E-06 5.8E-11 94.3 6.5 73 470-549 65-141 (635)
45 2je0_A Acidic leucine-rich nuc 98.1 7.2E-07 2.5E-11 78.2 2.8 84 455-549 42-130 (149)
46 3te6_A Regulatory protein SIR3 98.1 5.1E-06 1.8E-10 82.1 8.9 105 164-273 21-145 (318)
47 1a9n_A U2A', U2A'; complex (nu 98.1 1.5E-06 5.1E-11 78.6 4.7 68 475-549 58-130 (176)
48 3g39_A Variable lymphocyte rec 98.1 4.1E-06 1.4E-10 75.3 7.5 63 481-550 30-96 (170)
49 2ell_A Acidic leucine-rich nuc 98.1 1.4E-06 4.9E-11 77.9 4.5 84 455-549 49-137 (168)
50 1dce_A Protein (RAB geranylger 98.1 1.8E-06 6.2E-11 93.1 6.1 85 456-551 464-552 (567)
51 1w8a_A SLIT protein; signaling 98.1 3.7E-06 1.3E-10 77.2 7.3 65 476-547 49-117 (192)
52 3m19_A Variable lymphocyte rec 98.1 5.1E-06 1.7E-10 79.7 8.2 73 471-550 73-149 (251)
53 1p9a_G Platelet glycoprotein I 98.1 5.2E-06 1.8E-10 81.6 7.6 67 478-551 74-143 (290)
54 2v70_A SLIT-2, SLIT homolog 2 98.1 5.5E-06 1.9E-10 77.8 7.5 70 473-549 49-122 (220)
55 2je0_A Acidic leucine-rich nuc 98.1 2.1E-06 7.3E-11 75.1 4.2 85 455-548 17-104 (149)
56 4fcg_A Uncharacterized protein 98.1 3.8E-06 1.3E-10 84.1 6.2 70 475-551 121-202 (328)
57 1iqp_A RFCS; clamp loader, ext 98.0 1.5E-05 5.1E-10 79.3 10.2 52 157-208 19-72 (327)
58 2o6q_A Variable lymphocyte rec 98.0 9.7E-06 3.3E-10 78.6 8.4 73 471-550 123-199 (270)
59 1a9n_A U2A', U2A'; complex (nu 98.0 5.8E-06 2E-10 74.6 6.3 85 454-549 18-105 (176)
60 2xot_A Amphoterin-induced prot 98.0 5.7E-06 2E-10 84.0 6.7 40 509-548 135-179 (361)
61 2o6q_A Variable lymphocyte rec 98.0 9.7E-06 3.3E-10 78.6 8.0 73 471-550 75-151 (270)
62 1dce_A Protein (RAB geranylger 98.0 7.1E-06 2.4E-10 88.4 7.7 67 477-551 459-529 (567)
63 4fcg_A Uncharacterized protein 98.0 5E-06 1.7E-10 83.2 5.7 87 455-551 81-170 (328)
64 3rfs_A Internalin B, repeat mo 98.0 1.3E-05 4.4E-10 77.8 8.3 73 471-550 123-199 (272)
65 2ifg_A High affinity nerve gro 98.0 7.8E-06 2.7E-10 82.3 6.7 68 471-545 46-116 (347)
66 3o6n_A APL1; leucine-rich repe 98.0 8.9E-06 3E-10 83.3 7.2 72 471-549 83-158 (390)
67 1xku_A Decorin; proteoglycan, 98.0 1.2E-05 4.2E-10 80.2 7.8 74 470-550 205-281 (330)
68 3vq2_A TLR4, TOLL-like recepto 98.0 1E-05 3.4E-10 88.0 7.7 67 472-545 71-141 (606)
69 3vq2_A TLR4, TOLL-like recepto 97.9 1.1E-05 3.7E-10 87.7 7.8 86 455-549 32-121 (606)
70 3rfs_A Internalin B, repeat mo 97.9 1.8E-05 6.2E-10 76.8 8.4 69 473-548 101-173 (272)
71 3a79_B TLR6, VLRB.59, TOLL-lik 97.9 1E-05 3.5E-10 87.2 7.2 84 455-548 52-137 (562)
72 2o6r_A Variable lymphocyte rec 97.9 2E-05 6.8E-10 71.0 7.8 83 455-546 52-138 (177)
73 1w8a_A SLIT protein; signaling 97.9 1.4E-05 4.7E-10 73.3 6.7 81 456-545 55-139 (192)
74 2wfh_A SLIT homolog 2 protein 97.9 1.8E-05 6E-10 72.7 7.3 80 456-544 55-138 (193)
75 3oja_B Anopheles plasmodium-re 97.9 1.4E-05 4.7E-10 86.9 7.6 72 471-549 89-164 (597)
76 1ogq_A PGIP-2, polygalacturona 97.9 5.4E-06 1.8E-10 82.4 4.0 70 474-550 94-168 (313)
77 3zyi_A Leucine-rich repeat-con 97.9 1.5E-05 5.2E-10 83.4 7.5 72 471-549 89-164 (452)
78 2z80_A TOLL-like receptor 2, v 97.9 1.1E-05 3.7E-10 81.5 6.0 71 472-549 67-141 (353)
79 3o53_A Protein LRIM1, AGAP0063 97.9 1.2E-05 4.1E-10 79.9 6.1 68 477-551 165-233 (317)
80 2xot_A Amphoterin-induced prot 97.9 1.6E-05 5.6E-10 80.6 7.1 88 455-551 64-155 (361)
81 2z7x_B TOLL-like receptor 1, v 97.9 1.1E-05 3.9E-10 85.9 6.1 68 471-546 35-104 (520)
82 2ft3_A Biglycan; proteoglycan, 97.9 1.8E-05 6.2E-10 79.1 7.1 64 474-545 95-160 (332)
83 2ft3_A Biglycan; proteoglycan, 97.9 1.3E-05 4.4E-10 80.2 6.0 71 472-549 208-281 (332)
84 4g8a_A TOLL-like receptor 4; l 97.9 1.5E-05 5.1E-10 86.8 7.0 70 471-547 90-163 (635)
85 3o6n_A APL1; leucine-rich repe 97.8 2.8E-05 9.5E-10 79.6 8.4 71 471-548 107-181 (390)
86 1ozn_A Reticulon 4 receptor; N 97.8 2.9E-05 9.9E-10 75.7 8.0 74 471-550 70-147 (285)
87 2z62_A TOLL-like receptor 4, v 97.8 2.1E-05 7.1E-10 76.4 6.9 71 471-548 90-165 (276)
88 1ozn_A Reticulon 4 receptor; N 97.8 3.3E-05 1.1E-09 75.3 8.4 88 455-550 80-171 (285)
89 2id5_A Lingo-1, leucine rich r 97.8 2.2E-05 7.7E-10 82.6 7.5 69 472-547 47-119 (477)
90 3oja_B Anopheles plasmodium-re 97.8 2.9E-05 9.8E-10 84.4 8.4 72 470-548 112-187 (597)
91 1ogq_A PGIP-2, polygalacturona 97.8 1E-05 3.5E-10 80.4 4.3 67 473-545 117-187 (313)
92 1xku_A Decorin; proteoglycan, 97.8 3.2E-05 1.1E-09 77.2 7.8 71 470-548 65-137 (330)
93 3oja_A Leucine-rich immune mol 97.8 1.8E-05 6.2E-10 83.7 6.1 72 473-551 160-233 (487)
94 2z62_A TOLL-like receptor 4, v 97.8 2.6E-05 8.8E-10 75.7 6.7 73 471-550 66-144 (276)
95 2z63_A TOLL-like receptor 4, v 97.8 2.5E-05 8.7E-10 84.0 7.1 68 474-548 93-165 (570)
96 1jr3_A DNA polymerase III subu 97.8 7.3E-05 2.5E-09 75.9 10.0 50 159-208 12-64 (373)
97 1ds9_A Outer arm dynein; leuci 97.8 1.7E-06 5.8E-11 79.8 -2.1 64 476-547 43-108 (198)
98 3zyj_A Leucine-rich repeat-con 97.8 2.9E-05 1E-09 80.9 7.0 62 473-541 104-169 (440)
99 2w58_A DNAI, primosome compone 97.7 8.1E-05 2.8E-09 68.6 8.9 35 183-217 55-89 (202)
100 2z63_A TOLL-like receptor 4, v 97.7 3E-05 1E-09 83.4 6.8 75 470-551 65-145 (570)
101 2xwt_C Thyrotropin receptor; s 97.7 2.2E-05 7.4E-10 74.5 4.8 72 471-550 70-149 (239)
102 4ecn_A Leucine-rich repeat pro 97.7 5E-05 1.7E-09 85.7 8.4 85 456-550 549-637 (876)
103 1ziw_A TOLL-like receptor 3; i 97.7 5.3E-05 1.8E-09 83.5 8.6 72 470-548 62-137 (680)
104 2ifg_A High affinity nerve gro 97.7 4.2E-05 1.4E-09 76.9 7.1 72 471-551 23-99 (347)
105 1xeu_A Internalin C; cellular 97.7 2.7E-05 9.3E-10 75.2 5.5 81 455-548 41-122 (263)
106 4ezg_A Putative uncharacterize 97.7 1.4E-05 4.7E-10 73.6 3.1 64 474-545 129-194 (197)
107 3v47_A TOLL-like receptor 5B a 97.7 3.5E-05 1.2E-09 80.5 6.4 68 471-545 337-408 (455)
108 2xwt_C Thyrotropin receptor; s 97.7 2.7E-05 9.2E-10 73.9 5.1 86 455-550 80-174 (239)
109 4ezg_A Putative uncharacterize 97.7 4.2E-05 1.4E-09 70.2 6.2 86 454-548 87-175 (197)
110 3h4m_A Proteasome-activating n 97.7 8.3E-05 2.8E-09 72.5 8.6 52 157-208 11-77 (285)
111 2z66_A Variable lymphocyte rec 97.7 4.2E-05 1.4E-09 75.4 6.4 68 473-547 167-238 (306)
112 2z81_A CD282 antigen, TOLL-lik 97.7 3.6E-05 1.2E-09 82.5 6.2 69 473-548 66-140 (549)
113 1wwl_A Monocyte differentiatio 97.7 5.9E-05 2E-09 74.7 7.2 87 455-549 201-291 (312)
114 1xeu_A Internalin C; cellular 97.7 8E-05 2.7E-09 71.9 7.7 81 455-548 63-144 (263)
115 3ec2_A DNA replication protein 97.7 0.0001 3.5E-09 66.6 8.0 40 168-207 19-63 (180)
116 2z80_A TOLL-like receptor 2, v 97.7 3.2E-05 1.1E-09 78.0 5.1 63 473-542 92-159 (353)
117 2chq_A Replication factor C sm 97.6 5.3E-05 1.8E-09 75.0 6.6 50 157-206 11-62 (319)
118 3t6q_A CD180 antigen; protein- 97.6 4.8E-05 1.6E-09 82.6 6.8 70 471-547 71-144 (606)
119 4eco_A Uncharacterized protein 97.6 7.2E-05 2.5E-09 81.9 8.0 87 456-551 489-585 (636)
120 2z81_A CD282 antigen, TOLL-lik 97.6 7.8E-05 2.7E-09 79.8 8.1 47 475-528 381-428 (549)
121 3b9p_A CG5977-PA, isoform A; A 97.6 0.00014 4.9E-09 71.3 9.2 51 157-207 15-79 (297)
122 2z7x_B TOLL-like receptor 1, v 97.6 4E-05 1.4E-09 81.6 5.5 82 455-546 45-129 (520)
123 1h6u_A Internalin H; cell adhe 97.6 7E-05 2.4E-09 74.1 6.8 64 477-548 81-145 (308)
124 3rgz_A Protein brassinosteroid 97.6 5.3E-05 1.8E-09 84.8 6.7 83 462-550 637-723 (768)
125 1h6u_A Internalin H; cell adhe 97.6 7.1E-05 2.4E-09 74.0 6.8 84 454-549 84-168 (308)
126 4glp_A Monocyte differentiatio 97.6 5.8E-05 2E-09 74.6 6.2 88 454-549 196-289 (310)
127 1ziw_A TOLL-like receptor 3; i 97.6 7.2E-05 2.5E-09 82.4 7.5 86 455-549 25-114 (680)
128 3zyi_A Leucine-rich repeat-con 97.6 7.6E-05 2.6E-09 78.0 7.3 21 471-491 137-157 (452)
129 3zyj_A Leucine-rich repeat-con 97.6 8.3E-05 2.8E-09 77.4 7.3 42 509-550 230-273 (440)
130 3j0a_A TOLL-like receptor 5; m 97.6 4.7E-05 1.6E-09 86.2 5.7 70 471-547 63-138 (844)
131 4ecn_A Leucine-rich repeat pro 97.6 0.0001 3.6E-09 83.1 8.1 74 471-551 742-825 (876)
132 1h6t_A Internalin B; cell adhe 97.6 0.00011 3.7E-09 72.1 7.3 37 509-546 177-214 (291)
133 3t6q_A CD180 antigen; protein- 97.5 9.7E-05 3.3E-09 80.1 7.5 71 471-548 95-169 (606)
134 1h6t_A Internalin B; cell adhe 97.5 9.3E-05 3.2E-09 72.5 6.6 65 477-548 86-150 (291)
135 3cf0_A Transitional endoplasmi 97.5 0.00023 7.8E-09 70.1 9.4 48 160-207 12-74 (301)
136 3d8b_A Fidgetin-like protein 1 97.5 0.00026 9E-09 71.5 10.1 67 138-207 62-142 (357)
137 3a79_B TLR6, VLRB.59, TOLL-lik 97.5 6.8E-05 2.3E-09 80.7 5.8 82 455-546 76-160 (562)
138 1o6v_A Internalin A; bacterial 97.5 0.0001 3.5E-09 77.3 6.9 63 477-548 86-150 (466)
139 4fmz_A Internalin; leucine ric 97.5 0.00012 4.1E-09 73.3 7.2 58 477-542 84-142 (347)
140 2z66_A Variable lymphocyte rec 97.5 5.5E-05 1.9E-09 74.5 4.5 38 509-546 125-164 (306)
141 2qz4_A Paraplegin; AAA+, SPG7, 97.5 0.00025 8.6E-09 68.0 9.1 47 162-208 5-65 (262)
142 1qvr_A CLPB protein; coiled co 97.5 0.00021 7.3E-09 80.8 9.8 48 160-207 167-216 (854)
143 3v47_A TOLL-like receptor 5B a 97.5 0.00015 5.1E-09 75.6 7.9 88 455-551 299-390 (455)
144 3pvs_A Replication-associated 97.5 0.00016 5.6E-09 75.2 7.3 51 159-209 22-77 (447)
145 3bz5_A Internalin-J, INLJ; leu 97.5 0.0002 6.8E-09 75.0 8.0 61 477-548 81-143 (457)
146 3g06_A SSPH2 (leucine-rich rep 97.4 0.00026 8.8E-09 77.0 9.0 39 480-527 80-118 (622)
147 1sxj_A Activator 1 95 kDa subu 97.4 0.00017 5.9E-09 76.7 7.5 49 158-206 34-101 (516)
148 2id5_A Lingo-1, leucine rich r 97.4 0.00015 5E-09 76.3 6.7 69 472-547 71-143 (477)
149 1wwl_A Monocyte differentiatio 97.4 0.00015 5.1E-09 71.7 6.3 63 475-546 247-310 (312)
150 3rgz_A Protein brassinosteroid 97.4 8.6E-05 2.9E-09 83.1 5.1 72 474-551 625-700 (768)
151 4eco_A Uncharacterized protein 97.4 0.00015 5.3E-09 79.2 7.0 73 471-550 447-531 (636)
152 3o53_A Protein LRIM1, AGAP0063 97.4 6.9E-05 2.4E-09 74.4 3.4 75 470-551 133-210 (317)
153 1m9s_A Internalin B; cell inva 97.4 0.00022 7.5E-09 77.3 7.6 84 454-548 64-147 (605)
154 2zan_A Vacuolar protein sortin 97.4 0.0025 8.7E-08 66.2 15.1 49 158-206 129-191 (444)
155 1sxj_D Activator 1 41 kDa subu 97.4 0.00022 7.4E-09 71.7 6.7 50 158-207 32-83 (353)
156 3eie_A Vacuolar protein sortin 97.3 0.00028 9.6E-09 70.2 7.3 51 158-208 13-77 (322)
157 3u61_B DNA polymerase accessor 97.3 0.00035 1.2E-08 69.4 8.0 49 159-207 22-73 (324)
158 1m9s_A Internalin B; cell inva 97.3 0.00026 8.8E-09 76.8 7.5 84 454-549 86-170 (605)
159 3g06_A SSPH2 (leucine-rich rep 97.3 0.00028 9.6E-09 76.7 7.7 58 481-549 61-118 (622)
160 1o6v_A Internalin A; bacterial 97.3 0.00014 4.6E-09 76.4 4.7 63 477-548 64-128 (466)
161 3cvr_A Invasion plasmid antige 97.3 0.00036 1.2E-08 75.0 8.0 61 480-551 159-226 (571)
162 1xwi_A SKD1 protein; VPS4B, AA 97.3 0.00042 1.4E-08 68.9 8.0 46 161-206 10-69 (322)
163 3oja_A Leucine-rich immune mol 97.3 0.00011 3.7E-09 77.7 3.9 88 456-551 121-210 (487)
164 2z4s_A Chromosomal replication 97.3 0.0004 1.4E-08 72.2 8.0 74 182-271 130-205 (440)
165 1ds9_A Outer arm dynein; leuci 97.3 1.4E-05 4.7E-10 73.6 -3.0 72 477-549 14-87 (198)
166 4fmz_A Internalin; leucine ric 97.2 0.00044 1.5E-08 69.2 7.3 66 476-548 105-171 (347)
167 3bz5_A Internalin-J, INLJ; leu 97.2 0.00027 9.1E-09 74.0 5.9 79 455-548 42-122 (457)
168 3syl_A Protein CBBX; photosynt 97.2 0.001 3.6E-08 65.3 9.8 45 164-208 32-93 (309)
169 3pxg_A Negative regulator of g 97.2 0.00063 2.2E-08 71.3 8.4 49 160-208 177-227 (468)
170 4b4t_J 26S protease regulatory 97.2 0.00067 2.3E-08 68.8 8.2 50 161-210 146-210 (405)
171 4b4t_L 26S protease subunit RP 97.2 0.00075 2.6E-08 69.4 8.6 48 162-209 180-242 (437)
172 1r6b_X CLPA protein; AAA+, N-t 97.2 0.00061 2.1E-08 76.1 8.6 47 161-207 184-232 (758)
173 3cvr_A Invasion plasmid antige 97.2 0.00045 1.5E-08 74.2 6.9 56 481-545 180-243 (571)
174 3vfd_A Spastin; ATPase, microt 97.2 0.00067 2.3E-08 69.3 8.0 51 157-207 109-173 (389)
175 4b4t_M 26S protease regulatory 97.2 0.0006 2.1E-08 70.1 7.3 51 159-209 177-242 (434)
176 2qp9_X Vacuolar protein sortin 97.1 0.00077 2.6E-08 68.0 7.9 49 159-207 47-109 (355)
177 1jl5_A Outer protein YOPM; leu 97.1 0.0007 2.4E-08 70.7 7.8 65 476-550 148-213 (454)
178 3n70_A Transport activator; si 97.1 0.00024 8.1E-09 61.8 3.5 43 164-206 2-48 (145)
179 4b4t_H 26S protease regulatory 97.1 0.0012 4.1E-08 68.0 9.1 49 162-210 208-271 (467)
180 1l8q_A Chromosomal replication 97.1 0.001 3.5E-08 66.1 8.1 27 182-208 37-63 (324)
181 4b4t_K 26S protease regulatory 97.1 0.00093 3.2E-08 68.6 7.7 48 162-209 171-233 (428)
182 4b4t_I 26S protease regulatory 97.0 0.0011 3.7E-08 67.6 7.6 50 161-210 180-244 (437)
183 4ay9_X Follicle-stimulating ho 97.0 0.00063 2.1E-08 68.4 5.9 73 471-550 143-220 (350)
184 3pfi_A Holliday junction ATP-d 97.0 0.00036 1.2E-08 69.8 4.0 51 159-209 25-82 (338)
185 4fcw_A Chaperone protein CLPB; 96.9 0.0013 4.3E-08 64.8 7.1 45 164-208 18-73 (311)
186 4glp_A Monocyte differentiatio 96.9 0.00082 2.8E-08 66.2 5.5 59 480-546 250-308 (310)
187 3bos_A Putative DNA replicatio 96.9 0.0012 4.2E-08 61.9 6.5 58 160-217 25-87 (242)
188 4ay9_X Follicle-stimulating ho 96.9 0.00068 2.3E-08 68.2 5.0 87 456-550 31-122 (350)
189 2kjq_A DNAA-related protein; s 96.9 0.0028 9.7E-08 55.1 8.0 44 164-208 19-62 (149)
190 1jl5_A Outer protein YOPM; leu 96.8 0.0019 6.5E-08 67.4 7.8 62 477-548 191-253 (454)
191 3cf2_A TER ATPase, transitiona 96.8 0.0017 5.9E-08 71.8 7.5 48 162-209 203-265 (806)
192 2c9o_A RUVB-like 1; hexameric 96.8 0.0015 5.1E-08 68.2 6.8 48 162-209 36-90 (456)
193 3co5_A Putative two-component 96.8 0.00036 1.2E-08 60.5 1.5 44 164-207 5-52 (143)
194 3rw6_A Nuclear RNA export fact 96.7 0.001 3.5E-08 63.9 4.6 63 478-545 167-233 (267)
195 2ce7_A Cell division protein F 96.7 0.0052 1.8E-07 64.1 10.1 48 161-208 14-75 (476)
196 1lv7_A FTSH; alpha/beta domain 96.7 0.001 3.5E-08 63.7 4.4 50 159-208 8-71 (257)
197 2r62_A Cell division protease 96.7 0.00087 3E-08 64.5 3.7 50 160-209 8-71 (268)
198 2r44_A Uncharacterized protein 96.6 0.00059 2E-08 68.0 2.2 47 163-209 27-73 (331)
199 3hu3_A Transitional endoplasmi 96.6 0.0015 5.1E-08 68.7 5.3 46 162-207 203-263 (489)
200 2ca6_A RAN GTPase-activating p 96.6 0.00062 2.1E-08 69.3 2.1 89 456-546 188-288 (386)
201 3uk6_A RUVB-like 2; hexameric 96.6 0.0019 6.3E-08 65.3 5.3 48 162-209 43-97 (368)
202 1sxj_E Activator 1 40 kDa subu 96.5 0.002 6.7E-08 64.7 5.3 49 158-206 9-60 (354)
203 2qgz_A Helicase loader, putati 96.5 0.004 1.4E-07 61.3 7.1 47 171-217 136-188 (308)
204 1ixz_A ATP-dependent metallopr 96.5 0.0021 7.1E-08 61.3 4.8 48 160-207 13-74 (254)
205 1in4_A RUVB, holliday junction 96.4 0.0015 5.3E-08 65.1 3.5 48 161-208 23-77 (334)
206 1ofh_A ATP-dependent HSL prote 96.4 0.0019 6.4E-08 63.4 4.0 44 164-207 16-75 (310)
207 2ca6_A RAN GTPase-activating p 96.4 0.00051 1.7E-08 70.0 -0.2 93 454-548 215-319 (386)
208 3pxi_A Negative regulator of g 96.4 0.0023 7.7E-08 71.4 5.0 48 160-207 177-226 (758)
209 2bjv_A PSP operon transcriptio 96.3 0.0034 1.2E-07 60.2 5.1 45 163-207 6-54 (265)
210 1iy2_A ATP-dependent metallopr 96.3 0.0031 1.1E-07 61.1 4.9 50 158-207 35-98 (278)
211 1ypw_A Transitional endoplasmi 96.3 0.0038 1.3E-07 69.8 6.2 49 161-209 202-265 (806)
212 1qhx_A CPT, protein (chloramph 96.2 0.0023 8E-08 57.2 3.5 25 183-207 4-28 (178)
213 2vhj_A Ntpase P4, P4; non- hyd 96.1 0.005 1.7E-07 60.3 5.4 24 182-205 123-146 (331)
214 1sxj_C Activator 1 40 kDa subu 96.1 0.0035 1.2E-07 62.6 4.3 49 159-207 21-71 (340)
215 3kb2_A SPBC2 prophage-derived 96.0 0.0034 1.2E-07 55.6 3.4 25 183-207 2-26 (173)
216 2x8a_A Nuclear valosin-contain 96.0 0.004 1.4E-07 60.2 4.0 46 163-208 10-70 (274)
217 1d2n_A N-ethylmaleimide-sensit 96.0 0.004 1.4E-07 60.0 4.0 45 163-207 33-89 (272)
218 1a5t_A Delta prime, HOLB; zinc 96.0 0.077 2.6E-06 52.6 13.3 38 170-207 9-49 (334)
219 3nbx_X ATPase RAVA; AAA+ ATPas 96.0 0.0065 2.2E-07 63.8 5.6 44 164-207 23-66 (500)
220 2cvh_A DNA repair and recombin 96.0 0.021 7.2E-07 52.6 8.6 33 182-217 20-52 (220)
221 3hr8_A Protein RECA; alpha and 95.9 0.041 1.4E-06 55.0 11.1 45 173-217 47-96 (356)
222 1rz3_A Hypothetical protein rb 95.9 0.0049 1.7E-07 56.5 4.1 26 182-207 22-47 (201)
223 3trf_A Shikimate kinase, SK; a 95.9 0.0042 1.4E-07 55.9 3.5 26 182-207 5-30 (185)
224 2ast_B S-phase kinase-associat 95.9 0.0011 3.7E-08 65.9 -0.5 65 474-543 135-206 (336)
225 3dm5_A SRP54, signal recogniti 95.9 0.1 3.4E-06 53.6 13.9 28 182-209 100-127 (443)
226 3vaa_A Shikimate kinase, SK; s 95.9 0.0043 1.5E-07 56.8 3.4 26 182-207 25-50 (199)
227 1ojl_A Transcriptional regulat 95.8 0.0047 1.6E-07 60.7 3.6 44 163-206 2-49 (304)
228 3ice_A Transcription terminati 95.8 0.0057 1.9E-07 61.3 4.0 27 182-208 174-200 (422)
229 3t15_A Ribulose bisphosphate c 95.8 0.0057 2E-07 59.7 4.0 28 182-209 36-63 (293)
230 3hws_A ATP-dependent CLP prote 95.8 0.0058 2E-07 61.6 4.1 43 165-207 17-76 (363)
231 3lw7_A Adenylate kinase relate 95.7 0.0049 1.7E-07 54.6 3.1 20 183-202 2-21 (179)
232 1kag_A SKI, shikimate kinase I 95.6 0.0051 1.7E-07 54.6 2.7 25 183-207 5-29 (173)
233 2dhr_A FTSH; AAA+ protein, hex 95.6 0.0096 3.3E-07 62.5 5.1 48 160-207 28-89 (499)
234 1g8p_A Magnesium-chelatase 38 95.6 0.0059 2E-07 61.0 3.4 50 158-207 19-70 (350)
235 1zuh_A Shikimate kinase; alpha 95.5 0.0072 2.5E-07 53.4 3.3 26 182-207 7-32 (168)
236 2ast_B S-phase kinase-associat 95.5 0.0037 1.3E-07 61.9 1.6 61 475-542 216-282 (336)
237 1ly1_A Polynucleotide kinase; 95.5 0.0066 2.2E-07 54.1 3.0 22 183-204 3-24 (181)
238 3iij_A Coilin-interacting nucl 95.5 0.0059 2E-07 54.7 2.7 25 182-206 11-35 (180)
239 3c8u_A Fructokinase; YP_612366 95.5 0.0098 3.3E-07 54.8 4.2 26 182-207 22-47 (208)
240 1zp6_A Hypothetical protein AT 95.5 0.0074 2.5E-07 54.5 3.3 24 182-205 9-32 (191)
241 3t61_A Gluconokinase; PSI-biol 95.5 0.0071 2.4E-07 55.3 3.2 25 182-206 18-42 (202)
242 3goz_A Leucine-rich repeat-con 95.4 0.0051 1.7E-07 61.9 2.3 63 481-545 80-151 (362)
243 2c95_A Adenylate kinase 1; tra 95.4 0.0094 3.2E-07 54.0 3.8 25 182-206 9-33 (196)
244 2iyv_A Shikimate kinase, SK; t 95.4 0.0071 2.4E-07 54.3 2.9 25 183-207 3-27 (184)
245 1via_A Shikimate kinase; struc 95.4 0.0066 2.3E-07 54.1 2.7 25 183-207 5-29 (175)
246 2ck3_D ATP synthase subunit be 95.4 0.044 1.5E-06 56.5 9.0 88 182-273 153-266 (482)
247 3sb4_A Hypothetical leucine ri 95.4 0.02 6.8E-07 56.7 6.3 85 455-550 226-315 (329)
248 1nks_A Adenylate kinase; therm 95.3 0.014 4.8E-07 52.5 4.7 26 183-208 2-27 (194)
249 1xp8_A RECA protein, recombina 95.3 0.11 3.7E-06 52.2 11.6 46 172-217 59-109 (366)
250 1kht_A Adenylate kinase; phosp 95.3 0.0091 3.1E-07 53.8 3.4 26 183-208 4-29 (192)
251 1kgd_A CASK, peripheral plasma 95.3 0.0092 3.1E-07 53.6 3.3 25 183-207 6-30 (180)
252 2jaq_A Deoxyguanosine kinase; 95.3 0.0085 2.9E-07 54.6 3.0 24 184-207 2-25 (205)
253 1sky_E F1-ATPase, F1-ATP synth 95.3 0.046 1.6E-06 56.4 8.7 88 182-272 151-257 (473)
254 1vma_A Cell division protein F 95.3 0.067 2.3E-06 52.4 9.6 28 182-209 104-131 (306)
255 2rhm_A Putative kinase; P-loop 95.3 0.0094 3.2E-07 53.8 3.3 25 182-206 5-29 (193)
256 3sr0_A Adenylate kinase; phosp 95.2 0.029 1E-06 51.5 6.6 23 184-206 2-24 (206)
257 1ex7_A Guanylate kinase; subst 95.2 0.0091 3.1E-07 54.0 3.1 29 183-211 2-30 (186)
258 3uie_A Adenylyl-sulfate kinase 95.2 0.0098 3.3E-07 54.4 3.3 26 182-207 25-50 (200)
259 3a00_A Guanylate kinase, GMP k 95.2 0.0091 3.1E-07 53.9 3.0 28 183-210 2-29 (186)
260 1um8_A ATP-dependent CLP prote 95.2 0.013 4.3E-07 59.4 4.4 26 182-207 72-97 (376)
261 2yvu_A Probable adenylyl-sulfa 95.2 0.015 5.2E-07 52.3 4.4 27 182-208 13-39 (186)
262 4eun_A Thermoresistant glucoki 95.2 0.011 3.7E-07 54.0 3.4 25 182-206 29-53 (200)
263 2bwj_A Adenylate kinase 5; pho 95.1 0.012 4.1E-07 53.4 3.7 26 182-207 12-37 (199)
264 2ze6_A Isopentenyl transferase 95.1 0.0094 3.2E-07 56.8 3.0 25 183-207 2-26 (253)
265 2vli_A Antibiotic resistance p 95.1 0.0083 2.8E-07 53.7 2.5 25 183-207 6-30 (183)
266 3tau_A Guanylate kinase, GMP k 95.1 0.013 4.3E-07 54.0 3.7 27 182-208 8-34 (208)
267 1e6c_A Shikimate kinase; phosp 95.1 0.0092 3.1E-07 52.9 2.6 25 183-207 3-27 (173)
268 1y63_A LMAJ004144AAA protein; 95.1 0.012 4E-07 53.1 3.4 24 182-205 10-33 (184)
269 3bh0_A DNAB-like replicative h 95.1 0.065 2.2E-06 52.7 9.1 51 182-239 68-118 (315)
270 2if2_A Dephospho-COA kinase; a 95.1 0.012 4.1E-07 53.8 3.5 22 183-204 2-23 (204)
271 2ga8_A Hypothetical 39.9 kDa p 95.1 0.008 2.7E-07 59.8 2.3 29 182-210 24-52 (359)
272 2qor_A Guanylate kinase; phosp 95.0 0.011 3.8E-07 54.1 3.1 26 182-207 12-37 (204)
273 1knq_A Gluconate kinase; ALFA/ 95.0 0.012 4.1E-07 52.3 3.2 24 183-206 9-32 (175)
274 1cke_A CK, MSSA, protein (cyti 95.0 0.013 4.4E-07 54.5 3.5 24 183-206 6-29 (227)
275 1nn5_A Similar to deoxythymidy 95.0 0.019 6.4E-07 52.8 4.5 28 182-209 9-36 (215)
276 1tev_A UMP-CMP kinase; ploop, 95.0 0.012 4.1E-07 53.1 3.1 24 183-206 4-27 (196)
277 2pt5_A Shikimate kinase, SK; a 95.0 0.013 4.5E-07 51.6 3.2 24 184-207 2-25 (168)
278 1zu4_A FTSY; GTPase, signal re 95.0 0.054 1.9E-06 53.4 8.0 28 182-209 105-132 (320)
279 3tr0_A Guanylate kinase, GMP k 95.0 0.013 4.5E-07 53.5 3.3 25 182-206 7-31 (205)
280 1tue_A Replication protein E1; 95.0 0.014 5E-07 53.2 3.5 38 171-208 44-84 (212)
281 3m6a_A ATP-dependent protease 94.9 0.049 1.7E-06 58.0 8.1 45 164-208 82-134 (543)
282 3k1j_A LON protease, ATP-depen 94.9 0.016 5.4E-07 62.7 4.4 51 160-210 38-88 (604)
283 3cm0_A Adenylate kinase; ATP-b 94.9 0.014 4.8E-07 52.3 3.3 24 183-206 5-28 (186)
284 3goz_A Leucine-rich repeat-con 94.9 0.0061 2.1E-07 61.3 0.9 89 457-549 24-126 (362)
285 2gno_A DNA polymerase III, gam 94.9 0.077 2.6E-06 51.9 8.8 38 168-205 2-41 (305)
286 2bdt_A BH3686; alpha-beta prot 94.8 0.014 4.9E-07 52.6 3.2 22 183-204 3-24 (189)
287 3sb4_A Hypothetical leucine ri 94.8 0.027 9.3E-07 55.6 5.6 41 509-550 225-267 (329)
288 2plr_A DTMP kinase, probable t 94.8 0.024 8.4E-07 51.8 4.9 28 183-210 5-32 (213)
289 2j41_A Guanylate kinase; GMP, 94.8 0.015 5E-07 53.1 3.3 25 182-206 6-30 (207)
290 1qf9_A UMP/CMP kinase, protein 94.8 0.015 5.2E-07 52.3 3.3 25 183-207 7-31 (194)
291 1fx0_B ATP synthase beta chain 94.8 0.057 1.9E-06 55.9 7.9 88 182-273 165-279 (498)
292 1jjv_A Dephospho-COA kinase; P 94.8 0.015 5E-07 53.3 3.2 22 183-204 3-24 (206)
293 2px0_A Flagellar biosynthesis 94.8 0.061 2.1E-06 52.4 7.8 26 182-207 105-130 (296)
294 2cdn_A Adenylate kinase; phosp 94.8 0.016 5.6E-07 52.8 3.5 26 182-207 20-45 (201)
295 4gp7_A Metallophosphoesterase; 94.8 0.013 4.5E-07 52.1 2.8 22 182-203 9-30 (171)
296 1uj2_A Uridine-cytidine kinase 94.8 0.014 4.9E-07 55.4 3.2 26 182-207 22-47 (252)
297 1z7x_W Ribonuclease inhibitor; 94.8 0.0037 1.3E-07 64.9 -1.1 63 482-546 86-156 (461)
298 2pbr_A DTMP kinase, thymidylat 94.8 0.016 5.6E-07 52.2 3.4 24 184-207 2-25 (195)
299 2qt1_A Nicotinamide riboside k 94.7 0.016 5.5E-07 53.1 3.3 25 182-206 21-45 (207)
300 3asz_A Uridine kinase; cytidin 94.7 0.016 5.5E-07 53.2 3.3 26 182-207 6-31 (211)
301 2yhs_A FTSY, cell division pro 94.7 0.053 1.8E-06 56.4 7.4 35 182-217 293-327 (503)
302 3l0o_A Transcription terminati 94.7 0.0094 3.2E-07 59.7 1.8 27 182-208 175-201 (427)
303 2wwf_A Thymidilate kinase, put 94.7 0.017 5.8E-07 53.0 3.4 28 182-209 10-37 (212)
304 3un9_A NLR family member X1; l 94.7 0.0029 9.8E-08 64.2 -2.1 89 455-545 155-252 (372)
305 2grj_A Dephospho-COA kinase; T 94.7 0.017 5.7E-07 52.5 3.2 25 182-206 12-36 (192)
306 1xjc_A MOBB protein homolog; s 94.7 0.028 9.5E-07 49.8 4.6 35 182-216 4-39 (169)
307 2bbw_A Adenylate kinase 4, AK4 94.7 0.017 6E-07 54.5 3.5 26 182-207 27-52 (246)
308 1ye8_A Protein THEP1, hypothet 94.7 0.017 5.9E-07 51.7 3.3 24 184-207 2-25 (178)
309 1g41_A Heat shock protein HSLU 94.7 0.024 8.2E-07 58.3 4.7 28 182-209 50-77 (444)
310 1ukz_A Uridylate kinase; trans 94.6 0.016 5.5E-07 52.9 3.1 25 182-206 15-39 (203)
311 1uf9_A TT1252 protein; P-loop, 94.6 0.017 5.8E-07 52.5 3.2 24 182-205 8-31 (203)
312 1z7x_W Ribonuclease inhibitor; 94.6 0.0031 1.1E-07 65.5 -2.2 71 474-546 334-412 (461)
313 3ney_A 55 kDa erythrocyte memb 94.6 0.019 6.6E-07 52.2 3.3 26 182-207 19-44 (197)
314 1v5w_A DMC1, meiotic recombina 94.5 0.079 2.7E-06 52.8 8.1 25 182-206 122-146 (343)
315 1odf_A YGR205W, hypothetical 3 94.5 0.025 8.7E-07 55.0 4.2 26 182-207 31-56 (290)
316 2wsm_A Hydrogenase expression/ 94.5 0.032 1.1E-06 51.4 4.8 41 169-209 15-57 (221)
317 1zd8_A GTP:AMP phosphotransfer 94.5 0.021 7.3E-07 53.2 3.6 25 182-206 7-31 (227)
318 3rfe_A Platelet glycoprotein I 94.5 0.063 2.2E-06 45.3 6.2 35 510-544 31-67 (130)
319 3nwj_A ATSK2; P loop, shikimat 94.4 0.017 5.7E-07 54.9 2.7 26 182-207 48-73 (250)
320 1lvg_A Guanylate kinase, GMP k 94.4 0.019 6.5E-07 52.4 3.0 24 183-206 5-28 (198)
321 4e22_A Cytidylate kinase; P-lo 94.4 0.019 6.4E-07 54.6 3.0 26 182-207 27-52 (252)
322 1gvn_B Zeta; postsegregational 94.4 0.024 8.1E-07 55.1 3.7 25 182-206 33-57 (287)
323 1aky_A Adenylate kinase; ATP:A 94.4 0.02 6.9E-07 53.0 3.1 25 183-207 5-29 (220)
324 3fb4_A Adenylate kinase; psych 94.4 0.021 7.3E-07 52.6 3.3 23 184-206 2-24 (216)
325 2xxa_A Signal recognition part 94.4 0.21 7.2E-06 51.3 11.0 28 182-209 100-127 (433)
326 2z0h_A DTMP kinase, thymidylat 94.4 0.022 7.6E-07 51.5 3.3 25 184-208 2-26 (197)
327 1gtv_A TMK, thymidylate kinase 94.3 0.015 5E-07 53.5 2.0 25 183-207 1-25 (214)
328 3ake_A Cytidylate kinase; CMP 94.3 0.023 8E-07 51.8 3.4 25 183-207 3-27 (208)
329 3a4m_A L-seryl-tRNA(SEC) kinas 94.3 0.021 7.2E-07 54.5 3.2 25 183-207 5-29 (260)
330 2v54_A DTMP kinase, thymidylat 94.3 0.024 8.2E-07 51.6 3.4 25 182-206 4-28 (204)
331 1zak_A Adenylate kinase; ATP:A 94.3 0.02 6.8E-07 53.2 2.9 25 183-207 6-30 (222)
332 3tlx_A Adenylate kinase 2; str 94.3 0.026 8.9E-07 53.3 3.7 25 182-206 29-53 (243)
333 3io5_A Recombination and repai 94.3 0.085 2.9E-06 51.5 7.3 35 183-217 29-65 (333)
334 3dl0_A Adenylate kinase; phosp 94.3 0.023 7.7E-07 52.5 3.2 23 184-206 2-24 (216)
335 2hf9_A Probable hydrogenase ni 94.2 0.052 1.8E-06 50.2 5.6 28 182-209 38-65 (226)
336 3jvv_A Twitching mobility prot 94.2 0.018 6.2E-07 57.7 2.4 91 182-278 123-214 (356)
337 3e4g_A ATP synthase subunit S, 94.2 0.0082 2.8E-07 53.6 -0.1 88 454-545 60-153 (176)
338 1znw_A Guanylate kinase, GMP k 94.2 0.026 8.7E-07 51.8 3.3 25 182-206 20-44 (207)
339 2jeo_A Uridine-cytidine kinase 94.1 0.026 8.9E-07 53.3 3.3 25 182-206 25-49 (245)
340 3rw6_A Nuclear RNA export fact 94.1 0.027 9.2E-07 53.9 3.3 79 456-539 171-258 (267)
341 3umf_A Adenylate kinase; rossm 94.0 0.027 9.4E-07 52.1 3.1 25 182-206 29-53 (217)
342 1z6g_A Guanylate kinase; struc 94.0 0.025 8.7E-07 52.4 2.9 25 182-206 23-47 (218)
343 3aez_A Pantothenate kinase; tr 94.0 0.026 9E-07 55.5 3.1 26 182-207 90-115 (312)
344 3tqc_A Pantothenate kinase; bi 94.0 0.034 1.2E-06 54.7 3.9 26 182-207 92-117 (321)
345 2dr3_A UPF0273 protein PH0284; 94.0 0.048 1.6E-06 51.1 4.9 36 182-217 23-58 (247)
346 2pez_A Bifunctional 3'-phospho 94.0 0.029 1E-06 50.0 3.2 25 183-207 6-30 (179)
347 1n0w_A DNA repair protein RAD5 93.9 0.063 2.2E-06 50.2 5.6 24 182-205 24-47 (243)
348 3bgw_A DNAB-like replicative h 93.9 0.19 6.4E-06 52.0 9.6 35 182-216 197-231 (444)
349 3vr4_D V-type sodium ATPase su 93.9 0.054 1.8E-06 55.5 5.4 88 182-272 151-260 (465)
350 1io0_A Tropomodulin; LRR prote 93.9 0.0071 2.4E-07 54.6 -1.1 70 474-545 86-164 (185)
351 2p5t_B PEZT; postsegregational 93.9 0.028 9.5E-07 53.4 3.1 26 182-207 32-57 (253)
352 4a1f_A DNAB helicase, replicat 93.9 0.081 2.8E-06 52.4 6.5 53 182-241 46-98 (338)
353 1htw_A HI0065; nucleotide-bind 93.9 0.032 1.1E-06 48.9 3.1 25 182-206 33-57 (158)
354 1vht_A Dephospho-COA kinase; s 93.8 0.031 1.1E-06 51.6 3.2 22 183-204 5-26 (218)
355 2q6t_A DNAB replication FORK h 93.8 0.27 9.2E-06 50.8 10.7 52 182-240 200-252 (444)
356 3ogk_B Coronatine-insensitive 93.8 0.005 1.7E-07 66.2 -2.6 64 476-541 187-252 (592)
357 3r20_A Cytidylate kinase; stru 93.8 0.031 1.1E-06 52.3 3.1 26 182-207 9-34 (233)
358 1m7g_A Adenylylsulfate kinase; 93.8 0.033 1.1E-06 51.2 3.3 26 182-207 25-50 (211)
359 1u94_A RECA protein, recombina 93.8 0.13 4.3E-06 51.5 7.7 36 182-217 63-98 (356)
360 1j8m_F SRP54, signal recogniti 93.8 0.22 7.5E-06 48.4 9.3 28 182-209 98-125 (297)
361 3be4_A Adenylate kinase; malar 93.8 0.035 1.2E-06 51.3 3.4 24 183-206 6-29 (217)
362 1e4v_A Adenylate kinase; trans 93.8 0.035 1.2E-06 51.1 3.4 23 184-206 2-24 (214)
363 3d3q_A TRNA delta(2)-isopenten 93.7 0.033 1.1E-06 55.1 3.3 25 183-207 8-32 (340)
364 1rj9_A FTSY, signal recognitio 93.7 0.055 1.9E-06 52.9 4.8 35 182-217 102-136 (304)
365 1io0_A Tropomodulin; LRR prote 93.7 0.0071 2.4E-07 54.6 -1.5 90 454-545 35-136 (185)
366 3a8t_A Adenylate isopentenyltr 93.7 0.025 8.6E-07 55.9 2.3 26 182-207 40-65 (339)
367 2f6r_A COA synthase, bifunctio 93.6 0.033 1.1E-06 53.8 3.1 23 182-204 75-97 (281)
368 2ehv_A Hypothetical protein PH 93.6 0.036 1.2E-06 52.1 3.3 23 182-204 30-52 (251)
369 4a74_A DNA repair and recombin 93.6 0.037 1.3E-06 51.3 3.3 24 182-205 25-48 (231)
370 1s96_A Guanylate kinase, GMP k 93.6 0.037 1.3E-06 51.4 3.3 26 182-207 16-41 (219)
371 1ak2_A Adenylate kinase isoenz 93.6 0.034 1.2E-06 52.0 3.0 26 182-207 16-41 (233)
372 2xb4_A Adenylate kinase; ATP-b 93.6 0.038 1.3E-06 51.4 3.3 23 184-206 2-24 (223)
373 2w0m_A SSO2452; RECA, SSPF, un 93.6 0.046 1.6E-06 50.7 3.9 26 182-207 23-48 (235)
374 2zr9_A Protein RECA, recombina 93.6 0.16 5.3E-06 50.7 8.0 46 172-217 46-96 (349)
375 2i3b_A HCR-ntpase, human cance 93.5 0.036 1.2E-06 50.1 2.9 25 183-207 2-26 (189)
376 4hlc_A DTMP kinase, thymidylat 93.5 0.17 5.7E-06 46.3 7.4 30 183-212 3-32 (205)
377 2eyu_A Twitching motility prot 93.5 0.058 2E-06 51.5 4.5 90 181-275 24-113 (261)
378 3pxi_A Negative regulator of g 93.5 0.064 2.2E-06 59.7 5.4 46 163-208 491-547 (758)
379 2f1r_A Molybdopterin-guanine d 93.5 0.029 9.7E-07 49.9 2.1 26 183-208 3-28 (171)
380 3lnc_A Guanylate kinase, GMP k 93.4 0.027 9.2E-07 52.6 2.0 25 182-206 27-52 (231)
381 3crm_A TRNA delta(2)-isopenten 93.4 0.037 1.3E-06 54.4 3.0 25 183-207 6-30 (323)
382 3un9_A NLR family member X1; l 93.3 0.006 2E-07 61.8 -3.0 66 479-546 153-225 (372)
383 3exa_A TRNA delta(2)-isopenten 93.3 0.042 1.4E-06 53.6 3.2 24 183-206 4-27 (322)
384 1np6_A Molybdopterin-guanine d 93.3 0.075 2.6E-06 47.3 4.6 27 182-208 6-32 (174)
385 1sq5_A Pantothenate kinase; P- 93.2 0.044 1.5E-06 53.7 3.3 26 182-207 80-105 (308)
386 3kl4_A SRP54, signal recogniti 93.2 0.3 1E-05 50.1 9.6 28 182-209 97-124 (433)
387 1a7j_A Phosphoribulokinase; tr 93.2 0.028 9.6E-07 54.6 1.8 26 182-207 5-30 (290)
388 2pcj_A ABC transporter, lipopr 93.1 0.048 1.6E-06 50.8 3.2 34 182-216 30-63 (224)
389 3hjn_A DTMP kinase, thymidylat 93.1 0.13 4.5E-06 46.7 6.0 33 184-216 2-34 (197)
390 3tif_A Uncharacterized ABC tra 93.0 0.047 1.6E-06 51.3 2.9 35 182-217 31-65 (235)
391 3b9q_A Chloroplast SRP recepto 93.0 0.067 2.3E-06 52.3 4.1 35 182-217 100-134 (302)
392 3b85_A Phosphate starvation-in 93.0 0.043 1.5E-06 50.4 2.7 24 182-205 22-45 (208)
393 3foz_A TRNA delta(2)-isopenten 92.9 0.049 1.7E-06 53.0 3.1 25 182-206 10-34 (316)
394 1nlf_A Regulatory protein REPA 92.9 0.095 3.3E-06 50.4 5.1 26 182-207 30-55 (279)
395 1ypw_A Transitional endoplasmi 92.9 0.057 1.9E-06 60.3 3.9 49 162-210 476-539 (806)
396 1cr0_A DNA primase/helicase; R 92.9 0.11 3.8E-06 50.4 5.6 36 182-217 35-71 (296)
397 2c61_A A-type ATP synthase non 92.9 0.14 4.7E-06 52.8 6.4 88 182-272 152-261 (469)
398 2onk_A Molybdate/tungstate ABC 92.9 0.056 1.9E-06 50.9 3.3 33 183-216 25-57 (240)
399 2pt7_A CAG-ALFA; ATPase, prote 92.9 0.29 1E-05 48.3 8.7 120 182-312 171-292 (330)
400 1ltq_A Polynucleotide kinase; 92.9 0.05 1.7E-06 52.9 3.0 23 183-205 3-25 (301)
401 2qe7_A ATP synthase subunit al 92.8 0.2 6.7E-06 52.0 7.5 87 182-273 162-267 (502)
402 3cf2_A TER ATPase, transitiona 92.8 0.077 2.6E-06 58.7 4.7 46 163-208 477-537 (806)
403 2ck3_A ATP synthase subunit al 92.8 0.15 5.1E-06 52.9 6.5 88 182-272 162-274 (510)
404 3fwy_A Light-independent proto 92.8 0.052 1.8E-06 53.4 3.0 27 182-208 48-74 (314)
405 2cbz_A Multidrug resistance-as 92.7 0.056 1.9E-06 50.8 3.0 25 182-206 31-55 (237)
406 2z43_A DNA repair and recombin 92.7 0.27 9.1E-06 48.5 8.1 36 182-217 107-148 (324)
407 3fdi_A Uncharacterized protein 92.7 0.07 2.4E-06 48.7 3.5 26 183-208 7-32 (201)
408 1r6b_X CLPA protein; AAA+, N-t 92.6 0.049 1.7E-06 60.5 3.0 44 163-206 458-512 (758)
409 1b0u_A Histidine permease; ABC 92.6 0.056 1.9E-06 51.7 2.9 35 182-217 32-66 (262)
410 3gfo_A Cobalt import ATP-bindi 92.6 0.056 1.9E-06 52.1 2.9 35 182-217 34-68 (275)
411 2qi9_C Vitamin B12 import ATP- 92.6 0.072 2.5E-06 50.4 3.7 34 182-217 26-59 (249)
412 1q3t_A Cytidylate kinase; nucl 92.6 0.068 2.3E-06 50.0 3.5 25 182-206 16-40 (236)
413 2r6a_A DNAB helicase, replicat 92.6 0.17 5.9E-06 52.4 6.9 36 182-217 203-239 (454)
414 3zvl_A Bifunctional polynucleo 92.5 0.065 2.2E-06 55.0 3.5 25 182-206 258-282 (416)
415 2zts_A Putative uncharacterize 92.5 0.1 3.6E-06 48.8 4.8 36 182-217 30-66 (251)
416 4edh_A DTMP kinase, thymidylat 92.5 0.3 1E-05 44.9 7.7 30 183-212 7-37 (213)
417 2r9v_A ATP synthase subunit al 92.5 0.18 6.1E-06 52.3 6.7 87 182-273 175-280 (515)
418 1yrb_A ATP(GTP)binding protein 92.5 0.1 3.5E-06 49.4 4.7 26 182-207 14-39 (262)
419 4g1u_C Hemin import ATP-bindin 92.5 0.059 2E-06 51.6 2.9 35 182-217 37-71 (266)
420 1ji0_A ABC transporter; ATP bi 92.5 0.06 2E-06 50.7 2.9 35 182-217 32-66 (240)
421 1sgw_A Putative ABC transporte 92.5 0.057 1.9E-06 49.9 2.7 34 182-216 35-68 (214)
422 2d2e_A SUFC protein; ABC-ATPas 92.4 0.066 2.2E-06 50.8 3.1 36 182-217 29-65 (250)
423 3f9v_A Minichromosome maintena 92.4 0.055 1.9E-06 58.2 2.9 44 163-206 295-351 (595)
424 1g6h_A High-affinity branched- 92.4 0.061 2.1E-06 51.2 2.9 35 182-217 33-67 (257)
425 2qmh_A HPR kinase/phosphorylas 92.4 0.063 2.2E-06 48.6 2.8 25 182-206 34-58 (205)
426 2pze_A Cystic fibrosis transme 92.4 0.065 2.2E-06 50.1 3.0 25 182-206 34-58 (229)
427 1oix_A RAS-related protein RAB 92.4 0.075 2.6E-06 47.8 3.3 23 183-205 30-52 (191)
428 2ra8_A Uncharacterized protein 92.3 0.015 5E-07 58.6 -1.6 65 479-545 250-320 (362)
429 2olj_A Amino acid ABC transpor 92.3 0.066 2.3E-06 51.2 3.0 35 182-217 50-84 (263)
430 2r8r_A Sensor protein; KDPD, P 92.3 0.1 3.4E-06 48.4 4.1 30 184-213 8-38 (228)
431 2og2_A Putative signal recogni 92.3 0.092 3.1E-06 52.5 4.1 35 182-217 157-191 (359)
432 2zu0_C Probable ATP-dependent 92.3 0.069 2.4E-06 51.2 3.1 36 182-217 46-82 (267)
433 2ff7_A Alpha-hemolysin translo 92.3 0.066 2.3E-06 50.7 2.9 35 182-217 35-69 (247)
434 3e70_C DPA, signal recognition 92.3 0.1 3.4E-06 51.6 4.4 27 182-208 129-155 (328)
435 1mv5_A LMRA, multidrug resista 92.3 0.066 2.3E-06 50.5 2.9 35 182-217 28-62 (243)
436 3p32_A Probable GTPase RV1496/ 92.2 0.15 5.2E-06 50.9 5.8 26 182-207 79-104 (355)
437 3gqb_B V-type ATP synthase bet 92.2 0.17 5.8E-06 51.8 6.1 88 182-272 147-263 (464)
438 1vpl_A ABC transporter, ATP-bi 92.2 0.068 2.3E-06 50.8 2.9 35 182-217 41-75 (256)
439 2ghi_A Transport protein; mult 92.1 0.073 2.5E-06 50.8 3.0 34 182-217 46-79 (260)
440 4eaq_A DTMP kinase, thymidylat 92.1 0.082 2.8E-06 49.3 3.3 27 182-208 26-52 (229)
441 2ged_A SR-beta, signal recogni 92.1 0.13 4.5E-06 45.9 4.6 24 182-205 48-71 (193)
442 2ixe_A Antigen peptide transpo 92.0 0.073 2.5E-06 51.1 2.9 35 182-217 45-79 (271)
443 1cp2_A CP2, nitrogenase iron p 92.0 0.13 4.4E-06 49.0 4.7 27 183-209 2-28 (269)
444 2ocp_A DGK, deoxyguanosine kin 92.0 0.086 2.9E-06 49.5 3.3 25 183-207 3-27 (241)
445 2yz2_A Putative ABC transporte 91.9 0.075 2.6E-06 50.9 2.9 35 182-217 33-67 (266)
446 3ogk_B Coronatine-insensitive 91.9 0.26 8.9E-06 52.6 7.6 68 474-544 236-305 (592)
447 3eph_A TRNA isopentenyltransfe 91.9 0.079 2.7E-06 53.5 3.1 25 183-207 3-27 (409)
448 2v9p_A Replication protein E1; 91.9 0.084 2.9E-06 51.5 3.3 25 182-206 126-150 (305)
449 1ls1_A Signal recognition part 91.9 0.11 3.9E-06 50.5 4.2 28 182-209 98-125 (295)
450 2nq2_C Hypothetical ABC transp 91.9 0.078 2.7E-06 50.4 2.9 25 182-206 31-55 (253)
451 2ihy_A ABC transporter, ATP-bi 91.9 0.077 2.6E-06 51.2 2.9 34 182-216 47-80 (279)
452 2p1m_B Transport inhibitor res 91.9 0.019 6.5E-07 61.6 -1.6 85 455-542 130-221 (594)
453 2h92_A Cytidylate kinase; ross 91.8 0.077 2.6E-06 48.8 2.8 24 183-206 4-27 (219)
454 2zej_A Dardarin, leucine-rich 91.8 0.074 2.5E-06 47.4 2.6 21 184-204 4-24 (184)
455 2orw_A Thymidine kinase; TMTK, 91.8 0.14 5E-06 45.9 4.5 24 183-206 4-27 (184)
456 2f9l_A RAB11B, member RAS onco 91.7 0.085 2.9E-06 47.7 2.9 23 183-205 6-28 (199)
457 2wji_A Ferrous iron transport 91.7 0.091 3.1E-06 45.9 3.0 22 183-204 4-25 (165)
458 1svm_A Large T antigen; AAA+ f 91.7 0.09 3.1E-06 53.0 3.3 25 182-206 169-193 (377)
459 3end_A Light-independent proto 91.6 0.12 4.3E-06 50.3 4.2 28 182-209 41-68 (307)
460 3kta_A Chromosome segregation 91.6 0.11 3.8E-06 46.2 3.5 24 182-205 26-49 (182)
461 3gmt_A Adenylate kinase; ssgci 91.6 0.095 3.3E-06 48.8 3.1 24 183-206 9-32 (230)
462 2dyk_A GTP-binding protein; GT 91.6 0.098 3.4E-06 45.0 3.0 23 183-205 2-24 (161)
463 3oaa_A ATP synthase subunit al 91.6 0.39 1.3E-05 49.7 7.8 86 182-272 162-266 (513)
464 2ce2_X GTPase HRAS; signaling 91.5 0.1 3.5E-06 44.9 3.1 22 184-205 5-26 (166)
465 2vp4_A Deoxynucleoside kinase; 91.4 0.073 2.5E-06 49.7 2.2 24 182-205 20-43 (230)
466 2p67_A LAO/AO transport system 91.3 0.22 7.5E-06 49.5 5.7 25 182-206 56-80 (341)
467 4gzl_A RAS-related C3 botulinu 91.2 0.11 3.8E-06 47.2 3.2 23 182-204 30-52 (204)
468 2v3c_C SRP54, signal recogniti 91.2 0.084 2.9E-06 54.3 2.5 26 182-207 99-124 (432)
469 1puj_A YLQF, conserved hypothe 91.2 1.1 3.7E-05 43.1 10.3 36 27-63 12-47 (282)
470 2axn_A 6-phosphofructo-2-kinas 91.2 0.14 4.9E-06 54.0 4.4 29 182-210 35-63 (520)
471 2pjz_A Hypothetical protein ST 91.2 0.1 3.5E-06 49.8 2.9 34 182-217 30-63 (263)
472 3cmu_A Protein RECA, recombina 91.1 0.33 1.1E-05 58.7 7.7 36 182-217 1427-1462(2050)
473 3sop_A Neuronal-specific septi 91.1 0.12 4E-06 49.7 3.3 23 184-206 4-26 (270)
474 3mfy_A V-type ATP synthase alp 91.1 0.39 1.3E-05 50.3 7.3 49 182-236 227-275 (588)
475 2wjg_A FEOB, ferrous iron tran 91.1 0.12 4.1E-06 46.0 3.2 22 183-204 8-29 (188)
476 3cnl_A YLQF, putative uncharac 91.1 0.67 2.3E-05 44.1 8.6 30 27-56 10-39 (262)
477 1qvr_A CLPB protein; coiled co 91.1 0.13 4.5E-06 57.9 4.1 44 164-207 559-613 (854)
478 1z2a_A RAS-related protein RAB 91.0 0.12 4E-06 44.8 3.0 22 184-205 7-28 (168)
479 1fx0_A ATP synthase alpha chai 91.0 0.28 9.5E-06 50.9 6.1 87 182-273 163-268 (507)
480 1pzn_A RAD51, DNA repair and r 91.0 0.14 4.9E-06 51.0 3.9 25 182-206 131-155 (349)
481 2afh_E Nitrogenase iron protei 90.9 0.17 5.7E-06 48.9 4.2 26 183-208 3-28 (289)
482 3fvq_A Fe(3+) IONS import ATP- 90.9 0.12 4.2E-06 51.6 3.3 34 182-216 30-63 (359)
483 1u0l_A Probable GTPase ENGC; p 90.9 0.7 2.4E-05 44.9 8.7 25 182-206 169-193 (301)
484 1g8f_A Sulfate adenylyltransfe 90.9 0.17 5.9E-06 52.9 4.6 43 166-208 375-421 (511)
485 2bbs_A Cystic fibrosis transme 90.9 0.12 4.2E-06 50.1 3.2 24 182-205 64-87 (290)
486 3con_A GTPase NRAS; structural 90.9 0.12 4.1E-06 46.1 3.0 22 184-205 23-44 (190)
487 1u0j_A DNA replication protein 90.8 0.19 6.4E-06 47.9 4.3 33 173-205 91-127 (267)
488 3upu_A ATP-dependent DNA helic 90.8 0.27 9.4E-06 50.9 6.0 39 171-209 33-72 (459)
489 3nh6_A ATP-binding cassette SU 90.8 0.09 3.1E-06 51.4 2.2 35 182-217 80-114 (306)
490 2gj8_A MNME, tRNA modification 90.6 0.14 4.8E-06 45.1 3.1 22 184-205 6-27 (172)
491 2nzj_A GTP-binding protein REM 90.5 0.13 4.4E-06 45.0 2.8 21 184-204 6-26 (175)
492 1u8z_A RAS-related protein RAL 90.5 0.14 4.8E-06 44.2 3.0 21 184-204 6-26 (168)
493 1p5z_B DCK, deoxycytidine kina 90.5 0.092 3.1E-06 50.1 1.9 26 182-207 24-49 (263)
494 3hdt_A Putative kinase; struct 90.4 0.14 4.8E-06 47.5 3.0 26 182-207 14-39 (223)
495 1bif_A 6-phosphofructo-2-kinas 90.4 0.19 6.5E-06 52.4 4.4 29 182-210 39-67 (469)
496 3tui_C Methionine import ATP-b 90.4 0.14 4.7E-06 51.3 3.1 34 182-216 54-87 (366)
497 2ffh_A Protein (FFH); SRP54, s 90.4 0.22 7.4E-06 51.0 4.7 28 182-209 98-125 (425)
498 2erx_A GTP-binding protein DI- 90.3 0.14 4.9E-06 44.4 3.0 21 184-204 5-25 (172)
499 1m7b_A RND3/RHOE small GTP-bin 90.3 0.15 5.2E-06 45.2 3.1 22 184-205 9-30 (184)
500 4tmk_A Protein (thymidylate ki 90.3 0.39 1.3E-05 44.2 5.9 34 183-216 4-38 (213)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=1.3e-43 Score=318.28 Aligned_cols=151 Identities=40% Similarity=0.686 Sum_probs=127.1
Q ss_pred ChhhHHHHHhhCCCeEeecC-CCCCCCcccHHHHHHHHhccceeEeecCCccchhhhHHHHHHHHHhhhhcCCeEEeEEe
Q 037613 1 MTNYLYSALSRKSIETFIDD-QLNRGDKISQSLVNAIEASTISVIIFSEGYASSRWCLDELLKILECKREYVQIVIPVFY 79 (553)
Q Consensus 1 f~~~l~~~L~~~gi~~f~d~-~~~~g~~~~~~~~~ai~~s~~~ivv~S~~y~~S~wcl~EL~~i~~~~~~~~~~vlPvfy 79 (553)
|++|||.+|+++||+||+|+ ++++|+.|.++|.+||++|+++|||||+||++|+||++||++|++|.+..+++|+||||
T Consensus 24 Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~~i~~~~~~~~~~ViPIfy 103 (176)
T 3jrn_A 24 FISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFY 103 (176)
T ss_dssp HHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHHHHHHHHHHTTSCEEEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHHHHHhhhccCCCEEEEEEe
Confidence 79999999999999999998 99999999999999999999999999999999999999999999999989999999999
Q ss_pred eeCCcccccccCchHHHHHHHHHHhhhchhhHHHHHHHHHHhhhccCCccccccCCCCchhhhHHHHHHHHHhhhcCCCC
Q 037613 80 RVDPSDVRNQTGTFGDSFSKLEERFKENSKKLQSWRNALKEAASLSGFHSHNIRQLNLPESELTEEIVNHILKRLAELFP 159 (553)
Q Consensus 80 ~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~~~~w~~al~~v~~~~g~~~~~~~~~~~~e~~~i~~iv~~v~~~l~~~~~ 159 (553)
+|+|++||+|+|+||++|.+|+++ ...+++++||+||++|++++||++. ++|+++|++||++|.++++.++|
T Consensus 104 ~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~------~~e~~~i~~Iv~~v~~~l~~~~~ 175 (176)
T 3jrn_A 104 GVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG------DDDSKLVDKIANEISNKKTIYAT 175 (176)
T ss_dssp SSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC------SCHHHHHHHHHHHHHTTCC----
T ss_pred cCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC------CCHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999988 4557899999999999999999983 33999999999999999987765
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1.4e-42 Score=315.99 Aligned_cols=150 Identities=39% Similarity=0.750 Sum_probs=142.3
Q ss_pred ChhhHHHHHhhCCCeEeecC-CCCCCCcccHHHHHHHHhccceeEeecCCccchhhhHHHHHHHHHhhhh-cCCeEEeEE
Q 037613 1 MTNYLYSALSRKSIETFIDD-QLNRGDKISQSLVNAIEASTISVIIFSEGYASSRWCLDELLKILECKRE-YVQIVIPVF 78 (553)
Q Consensus 1 f~~~l~~~L~~~gi~~f~d~-~~~~g~~~~~~~~~ai~~s~~~ivv~S~~y~~S~wcl~EL~~i~~~~~~-~~~~vlPvf 78 (553)
|++|||.+|+++||+||+|+ ++++|+.|.++|.+||++|+++|||||+||++|.||++||++|++|++. .+++|+|||
T Consensus 51 Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~I~e~~~~~~~~~ViPIF 130 (204)
T 3ozi_A 51 FTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIF 130 (204)
T ss_dssp HHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHHHHHHHHHCTTSEECCEE
T ss_pred HHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHHHHHHHHHhcCCeeeEEEE
Confidence 79999999999999999998 9999999999999999999999999999999999999999999999865 689999999
Q ss_pred eeeCCcccccccCchHHHHHHHHHHhhhchhhHHHHHHHHHHhhhccCCccccccCCCCchhhhHHHHHHHHHhhhcC
Q 037613 79 YRVDPSDVRNQTGTFGDSFSKLEERFKENSKKLQSWRNALKEAASLSGFHSHNIRQLNLPESELTEEIVNHILKRLAE 156 (553)
Q Consensus 79 y~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~~~~w~~al~~v~~~~g~~~~~~~~~~~~e~~~i~~iv~~v~~~l~~ 156 (553)
|+|+|++||+|+|+||++|.+|++++.+ +++++||+||++|++++||++.++.+ |+++|++|+.+|+++++.
T Consensus 131 Y~VdPs~Vr~q~g~fg~af~~~~~~~~~--~~v~~Wr~AL~~va~lsG~~~~~~~~----e~~~i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 131 YMVDPSDVRHQTGCYKKAFRKHANKFDG--QTIQNWKDALKKVGDLKGWHIGKNDK----QGAIADKVSADIWSHISK 202 (204)
T ss_dssp ESSCHHHHHHTCTTHHHHHHHHTTTSCH--HHHHHHHHHHHHHHTSCBEEECTTSC----HHHHHHHHHHHHHHHHHH
T ss_pred eecCHHHHHhccccHHHHHHHHHHhhCH--HHHHHHHHHHHHHhccCceecCCCCC----HHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999998754 68999999999999999999998765 899999999999998864
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=6.7e-38 Score=339.27 Aligned_cols=257 Identities=15% Similarity=0.092 Sum_probs=200.9
Q ss_pred cchhhhHhhHHhhccc-----cCEEEEeecCCCchHHHHHHHHh----hhcCCCCceEEEEechhhhcccCCHHHHHHHH
Q 037613 166 VGVESRVVAIESLLSA-----APLLAIWGIGGIGKTTIARATFD----KISSDFEGSCFLENVREESQRLGGLACLRQKL 236 (553)
Q Consensus 166 vGr~~~~~~l~~~L~~-----~~vi~I~G~gGiGKTtLA~~v~~----~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~l 236 (553)
+||+.++++|.++|.. .++|+|+||||+||||||+++|+ ++..+|+.++|++ +++.+. ++...++..+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~--~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP--KSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST--THHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCC--CCHHHHHHHH
Confidence 4999999999999854 68999999999999999999996 7889999999996 433211 3688999999
Q ss_pred HHhhccCCC--C---c------ccHHHHHHHhcCC-CeEEEEcCCCChHhH--HHhhccc--------------------
Q 037613 237 LSNLFRDES--M---I------PDIDLHFKRLSRR-KVLVVFDDVTCFNQI--ESFIGSL-------------------- 282 (553)
Q Consensus 237 l~~l~~~~~--~---~------~~~~~l~~~L~~k-r~LlVLDdv~~~~~l--~~l~~~~-------------------- 282 (553)
+..++.... . . .....+++.|+++ |+||||||||+.+++ ....++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~~ 287 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEF 287 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHHTTCEEEEEESBGGGGGGCCSCEEE
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccccCCCEEEEEcCCHHHHHHcCCCCeE
Confidence 999876521 1 1 2367889999996 999999999998864 2211111
Q ss_pred --------------hhhhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHHHhhhcCCCHHHHHHHHHH-HhhcCCchHHH
Q 037613 283 --------------ECRHAFKQNHPDVGYEELSSKVIQHAQGVPLALKVLGCFLFGWEKKVWESAINK-LKQILHPKIHD 347 (553)
Q Consensus 283 --------------~~~~af~~~~~~~~~~~~~~~iv~~c~glPLal~~~g~~L~~~~~~~w~~~l~~-l~~~~~~~i~~ 347 (553)
|..++|.... .+.+++++.+|+++|+|+||||+++|+.|+.++. +|...+.. +.......+..
T Consensus 288 ~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~~~~i~~ 365 (549)
T 2a5y_B 288 IEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRGLVGVEC 365 (549)
T ss_dssp EECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHCSSTTCC
T ss_pred EECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhcccHHHHHH
Confidence 6666666532 3577889999999999999999999999987742 33232322 33335567888
Q ss_pred HHHHhHhhhcHHHHHhhh-----------hhhcccCCCChHHHHHHHHhc--CccH-----------HHHHHHHhhcCce
Q 037613 348 VLKLSYDDLDVNEKGIFL-----------DVACFFKSDDVYPVMKFLDAS--GFHL-----------EIGISVLADKSLI 403 (553)
Q Consensus 348 ~l~~Sy~~L~~~~k~~fl-----------~~a~fp~~~~~~~l~~~~~~~--g~~~-----------~~~l~~L~~~sLi 403 (553)
++.+||+.||++.|.||+ |||+||++++.+ +.+|+++ |++. ..++++|+++||+
T Consensus 366 ~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl 443 (549)
T 2a5y_B 366 ITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGAL 443 (549)
T ss_dssp CSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSC
T ss_pred HHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCe
Confidence 999999999999999999 999999998777 7899998 6653 2379999999999
Q ss_pred eeeCC---CceehhHHHHHHHHHHHhhhc
Q 037613 404 DVNPY---DRITMHDLLQELGREIVRQES 429 (553)
Q Consensus 404 ~~~~~---~~~~mHdlv~~~a~~i~~~e~ 429 (553)
+.... .+|+|||+||+||++++.+++
T Consensus 444 ~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 444 LSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp SEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred eEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 97643 469999999999998887665
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7.7e-34 Score=336.54 Aligned_cols=267 Identities=19% Similarity=0.258 Sum_probs=208.8
Q ss_pred CCCCCCCCCccchhhhHhhHHhhcc----ccCEEEEeecCCCchHHHHHHHHhh---hcCCCCceEEEEechhhhcccCC
Q 037613 156 ELFPHNNDRLVGVESRVVAIESLLS----AAPLLAIWGIGGIGKTTIARATFDK---ISSDFEGSCFLENVREESQRLGG 228 (553)
Q Consensus 156 ~~~~~~~~~~vGr~~~~~~l~~~L~----~~~vi~I~G~gGiGKTtLA~~v~~~---~~~~F~~~~~~~~~~~~s~~~~~ 228 (553)
...|..+..||||++++++|.++|. ..++|+|+||||+||||||+++|++ ...+|+..+|+.++++... ..
T Consensus 117 ~~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~ 194 (1249)
T 3sfz_A 117 GGVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK--SG 194 (1249)
T ss_dssp TTCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH--HH
T ss_pred CCCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc--hH
Confidence 3466677889999999999999994 2889999999999999999999986 4666877765544544211 23
Q ss_pred HHHHHHHHHHhhccCCCC----c----ccHHHHHHHhcCC--CeEEEEcCCCChHhHHHhhccc----------------
Q 037613 229 LACLRQKLLSNLFRDESM----I----PDIDLHFKRLSRR--KVLVVFDDVTCFNQIESFIGSL---------------- 282 (553)
Q Consensus 229 ~~~l~~~ll~~l~~~~~~----~----~~~~~l~~~L~~k--r~LlVLDdv~~~~~l~~l~~~~---------------- 282 (553)
.......++..+...... . .....++..+.++ |+||||||||+.++|+.+.+..
T Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~ 274 (1249)
T 3sfz_A 195 LLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVM 274 (1249)
T ss_dssp HHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCC
T ss_pred HHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhhcCCCEEEEEcCCHHHHHhhc
Confidence 344455566666543211 1 3455666677666 9999999999999988764332
Q ss_pred --------------------hhhhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHHHhhhcCCCHHHHHHHHHHHhhcCC
Q 037613 283 --------------------ECRHAFKQNHPDVGYEELSSKVIQHAQGVPLALKVLGCFLFGWEKKVWESAINKLKQILH 342 (553)
Q Consensus 283 --------------------~~~~af~~~~~~~~~~~~~~~iv~~c~glPLal~~~g~~L~~~~~~~w~~~l~~l~~~~~ 342 (553)
|...++ .+.+.+++++.+|+++|+|+||||+++|++|+.++ ..|...++.+.....
T Consensus 275 ~~~~~~~~~~~l~~~~a~~l~~~~~~---~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~ 350 (1249)
T 3sfz_A 275 GPKHVVPVESGLGREKGLEILSLFVN---MKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQF 350 (1249)
T ss_dssp SCBCCEECCSSCCHHHHHHHHHHHHT---SCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCC
T ss_pred CCceEEEecCCCCHHHHHHHHHHhhC---CChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhh
Confidence 222221 12233456799999999999999999999998766 579999998865431
Q ss_pred -----------chHHHHHHHhHhhhcHHHHHhhhhhhcccCCC--ChHHHHHHHHhcCccHHHHHHHHhhcCceeeeCCC
Q 037613 343 -----------PKIHDVLKLSYDDLDVNEKGIFLDVACFFKSD--DVYPVMKFLDASGFHLEIGISVLADKSLIDVNPYD 409 (553)
Q Consensus 343 -----------~~i~~~l~~Sy~~L~~~~k~~fl~~a~fp~~~--~~~~l~~~~~~~g~~~~~~l~~L~~~sLi~~~~~~ 409 (553)
+.+..+|.+||+.|++++|.||++||+||+++ +.+.++.+|.+++..++.++++|+++||++...++
T Consensus 351 ~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~ 430 (1249)
T 3sfz_A 351 KRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNG 430 (1249)
T ss_dssp CCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESS
T ss_pred hhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCC
Confidence 45999999999999999999999999999874 78899999998888889999999999999987666
Q ss_pred c---eehhHHHHHHHHHHHhhh
Q 037613 410 R---ITMHDLLQELGREIVRQE 428 (553)
Q Consensus 410 ~---~~mHdlv~~~a~~i~~~e 428 (553)
. |+|||+||+++++.+.++
T Consensus 431 ~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 431 KSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp SSEEEECCHHHHHHHHHHTGGG
T ss_pred CceEEEecHHHHHHHHhhhhHH
Confidence 5 999999999999986655
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.97 E-value=2.1e-32 Score=301.89 Aligned_cols=244 Identities=17% Similarity=0.129 Sum_probs=181.5
Q ss_pred CCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHh--hhcCCCCc-eEEEEechhhhcccCCHHHHHHHH
Q 037613 163 DRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFD--KISSDFEG-SCFLENVREESQRLGGLACLRQKL 236 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~--~~~~~F~~-~~~~~~~~~~s~~~~~~~~l~~~l 236 (553)
+..|||+.++++|.++|.. .++|+|+||||+||||||+++|+ +++.+|+. ++|+. ++ .. .+...+...+
T Consensus 128 k~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs-Vs---~~-~d~~~IL~~L 202 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-LK---NC-NSPETVLEML 202 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE-CC---CS-SSHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE-eC---CC-CCHHHHHHHH
Confidence 4469999999999999865 78999999999999999999997 57888998 56665 43 33 5566666666
Q ss_pred HHhhccC------CCC----c-----ccHHHHHHHh---cCCCeEEEEcCCCChHhHHHhhccc----------hh---h
Q 037613 237 LSNLFRD------ESM----I-----PDIDLHFKRL---SRRKVLVVFDDVTCFNQIESFIGSL----------EC---R 285 (553)
Q Consensus 237 l~~l~~~------~~~----~-----~~~~~l~~~L---~~kr~LlVLDdv~~~~~l~~l~~~~----------~~---~ 285 (553)
+..+... ... . .....+++.| .++|+||||||||+.++|+.+.+.. .. .
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~Va~~l~ 282 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHHSSCCEEEECSCSHHHHHHH
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhCCCeEEEEeccChHHHHhcC
Confidence 6543211 100 1 2244566655 6799999999999999998775332 00 0
Q ss_pred h--hcCCC--C---CCC--------------cHHHHHHHHHHHhcCCchhHHHHHhhhcCC--CHHHHHHHHHHHhhcCC
Q 037613 286 H--AFKQN--H---PDV--------------GYEELSSKVIQHAQGVPLALKVLGCFLFGW--EKKVWESAINKLKQILH 342 (553)
Q Consensus 286 ~--af~~~--~---~~~--------------~~~~~~~~iv~~c~glPLal~~~g~~L~~~--~~~~w~~~l~~l~~~~~ 342 (553)
. .+.-. . +.. ...++. .+.|+|+||||+++|+.|+++ +..+|+.. ..
T Consensus 283 g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~---~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~-------~~ 352 (1221)
T 1vt4_I 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP---REVLTTNPRRLSIIAESIRDGLATWDNWKHV-------NC 352 (1221)
T ss_dssp HHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHH---HHHCCCCHHHHHHHHHHHHHSCSSHHHHHHC-------SC
T ss_pred CCeEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHH---HHHhCCCHHHHHHHHHHHhCCCCCHHHHhcC-------Ch
Confidence 0 00000 0 000 011222 244999999999999999986 67888753 35
Q ss_pred chHHHHHHHhHhhhcHHH-HHhhhhhhcccCCC--ChHHHHHHHHhcCc-cHHHHHHHHhhcCceeeeC-CCceehhHHH
Q 037613 343 PKIHDVLKLSYDDLDVNE-KGIFLDVACFFKSD--DVYPVMKFLDASGF-HLEIGISVLADKSLIDVNP-YDRITMHDLL 417 (553)
Q Consensus 343 ~~i~~~l~~Sy~~L~~~~-k~~fl~~a~fp~~~--~~~~l~~~~~~~g~-~~~~~l~~L~~~sLi~~~~-~~~~~mHdlv 417 (553)
..+..+|++||+.||+++ |+||++||+||+++ +.+.++.+|.++|. .+..++++|+++||++... .++|+||||+
T Consensus 353 ~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLl 432 (1221)
T 1vt4_I 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432 (1221)
T ss_dssp HHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHH
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHH
Confidence 789999999999999999 99999999999875 57789999998863 4778999999999999863 5679999999
Q ss_pred HHHH
Q 037613 418 QELG 421 (553)
Q Consensus 418 ~~~a 421 (553)
++++
T Consensus 433 lELr 436 (1221)
T 1vt4_I 433 LELK 436 (1221)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9855
No 6
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=6.2e-31 Score=288.02 Aligned_cols=262 Identities=21% Similarity=0.267 Sum_probs=195.7
Q ss_pred CCCCCCCCCccchhhhHhhHHhhccc----cCEEEEeecCCCchHHHHHHHHhhh---cCCCC-ceEEEEechhhhcccC
Q 037613 156 ELFPHNNDRLVGVESRVVAIESLLSA----APLLAIWGIGGIGKTTIARATFDKI---SSDFE-GSCFLENVREESQRLG 227 (553)
Q Consensus 156 ~~~~~~~~~~vGr~~~~~~l~~~L~~----~~vi~I~G~gGiGKTtLA~~v~~~~---~~~F~-~~~~~~~~~~~s~~~~ 227 (553)
...|..+..||||+.++++|.++|.. .++|+|+||||+||||||.+++++. ..+|+ .++|+. ++.... .
T Consensus 117 ~~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~~~--~ 193 (591)
T 1z6t_A 117 GGVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQDK--S 193 (591)
T ss_dssp TTCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESCCH--H
T ss_pred CCCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCCCch--H
Confidence 34566778899999999999999963 7899999999999999999999854 67896 456665 433211 1
Q ss_pred CHHHHHHHHHHhhccC----CCCc----ccHHHHHHHhcC--CCeEEEEcCCCChHhHHHhhccc---------------
Q 037613 228 GLACLRQKLLSNLFRD----ESMI----PDIDLHFKRLSR--RKVLVVFDDVTCFNQIESFIGSL--------------- 282 (553)
Q Consensus 228 ~~~~l~~~ll~~l~~~----~~~~----~~~~~l~~~L~~--kr~LlVLDdv~~~~~l~~l~~~~--------------- 282 (553)
.+..-...+...+... .... .....+...+.+ +++||||||||+..+++.+.+..
T Consensus 194 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l~~~~~ilvTsR~~~~~~~~ 273 (591)
T 1z6t_A 194 GLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSV 273 (591)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTTCSSCEEEEEESCGGGGTTC
T ss_pred HHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHhcCCCeEEEECCCcHHHHhc
Confidence 1122222233344321 1111 344556666665 78999999999998888764322
Q ss_pred ---------------------hhhhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHHHhhhcCCCHHHHHHHHHHHhhcC
Q 037613 283 ---------------------ECRHAFKQNHPDVGYEELSSKVIQHAQGVPLALKVLGCFLFGWEKKVWESAINKLKQIL 341 (553)
Q Consensus 283 ---------------------~~~~af~~~~~~~~~~~~~~~iv~~c~glPLal~~~g~~L~~~~~~~w~~~l~~l~~~~ 341 (553)
|...++. +.....+.+.+|+++|+|+||||+++|+.|+... ..|...+..+....
T Consensus 274 ~~~~~~v~~l~~L~~~ea~~L~~~~~~~---~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~ 349 (591)
T 1z6t_A 274 MGPKYVVPVESSLGKEKGLEILSLFVNM---KKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQ 349 (591)
T ss_dssp CSCEEEEECCSSCCHHHHHHHHHHHHTS---CGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCC
T ss_pred CCCceEeecCCCCCHHHHHHHHHHHhCC---CcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhH
Confidence 2222211 1112245788999999999999999999998754 47998888887542
Q ss_pred -----------CchHHHHHHHhHhhhcHHHHHhhhhhhcccCC--CChHHHHHHHHhcCccHHHHHHHHhhcCceeeeCC
Q 037613 342 -----------HPKIHDVLKLSYDDLDVNEKGIFLDVACFFKS--DDVYPVMKFLDASGFHLEIGISVLADKSLIDVNPY 408 (553)
Q Consensus 342 -----------~~~i~~~l~~Sy~~L~~~~k~~fl~~a~fp~~--~~~~~l~~~~~~~g~~~~~~l~~L~~~sLi~~~~~ 408 (553)
...+..++..||+.||++.|.||++||+||.+ ++.+.+..+|..++.....++++|+++||++...+
T Consensus 350 ~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~ 429 (591)
T 1z6t_A 350 FKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRN 429 (591)
T ss_dssp CCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEE
T ss_pred HHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecC
Confidence 24799999999999999999999999999986 46788899998876677889999999999997643
Q ss_pred C---ceehhHHHHHHHHHH
Q 037613 409 D---RITMHDLLQELGREI 424 (553)
Q Consensus 409 ~---~~~mHdlv~~~a~~i 424 (553)
+ +|+||+++|+++++.
T Consensus 430 ~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 430 GKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp TTEEEEECCHHHHHHHHHH
T ss_pred CCccEEEEcHHHHHHHHhh
Confidence 2 599999999999987
No 7
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.89 E-value=9.8e-25 Score=195.04 Aligned_cols=100 Identities=19% Similarity=0.368 Sum_probs=95.5
Q ss_pred ChhhHHHHHhhCCCeEeecC-CCCCCCcccHHHHHHHHhccceeEeecCCccchhhhHHHHHHHHHhhhhcCCeEEeEEe
Q 037613 1 MTNYLYSALSRKSIETFIDD-QLNRGDKISQSLVNAIEASTISVIIFSEGYASSRWCLDELLKILECKREYVQIVIPVFY 79 (553)
Q Consensus 1 f~~~l~~~L~~~gi~~f~d~-~~~~g~~~~~~~~~ai~~s~~~ivv~S~~y~~S~wcl~EL~~i~~~~~~~~~~vlPvfy 79 (553)
|++||+.+|+++||+||+|+ ++.+|+.+.++|.+||++|+++|+|+|++|++|.||++||.++++|....++.|+||||
T Consensus 35 ~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~~~~~~~~~~~~iiPV~~ 114 (154)
T 3h16_A 35 FVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWH 114 (154)
T ss_dssp THHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHHHTCCCTTSCCCEEEEEE
T ss_pred HHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHHHHHHHhcCCCEEEEEEe
Confidence 78999999999999999999 99999999999999999999999999999999999999999999998778889999999
Q ss_pred eeCCcccccccCchHHHHHHH
Q 037613 80 RVDPSDVRNQTGTFGDSFSKL 100 (553)
Q Consensus 80 ~v~p~~vr~~~g~~~~~~~~~ 100 (553)
+|+|++||+|.|.|++.|...
T Consensus 115 ~v~p~~v~~~~~~~~~~~~~~ 135 (154)
T 3h16_A 115 KVSKDEVASFSPTMADKLAFN 135 (154)
T ss_dssp SCCTGGGTTTCCCCCSSCCEE
T ss_pred cCCHHHHhhCCccHHHHHhhh
Confidence 999999999999999877654
No 8
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.74 E-value=1e-19 Score=160.09 Aligned_cols=115 Identities=19% Similarity=0.315 Sum_probs=76.9
Q ss_pred ChhhHHHHHhh--CCCeEeecC-CCCCCCcccHHHHHHHHhccceeEeecCCccchhhhHHHHHHHHHhhhhcCCeEEeE
Q 037613 1 MTNYLYSALSR--KSIETFIDD-QLNRGDKISQSLVNAIEASTISVIIFSEGYASSRWCLDELLKILECKREYVQIVIPV 77 (553)
Q Consensus 1 f~~~l~~~L~~--~gi~~f~d~-~~~~g~~~~~~~~~ai~~s~~~ivv~S~~y~~S~wcl~EL~~i~~~~~~~~~~vlPv 77 (553)
|++||+.+|++ +|+++|+++ ++.+|+.+.++|.+||++|+++|+|+|+||++|.||+.|+..++.+.......|+||
T Consensus 24 ~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El~~al~~~~~~~~~vIpv 103 (146)
T 3ub2_A 24 AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPL 103 (146)
T ss_dssp HHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHHHHHHHHTSSSSSSEEEEE
T ss_pred HHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 57899999998 599999999 999999999999999999999999999999999999999999999873333467899
Q ss_pred EeeeCCcc----cccccCchHHHHHHHHHHhhhchhhHHHHHHHH
Q 037613 78 FYRVDPSD----VRNQTGTFGDSFSKLEERFKENSKKLQSWRNAL 118 (553)
Q Consensus 78 fy~v~p~~----vr~~~g~~~~~~~~~~~~~~~~~~~~~~w~~al 118 (553)
||+|++++ +|....... ...+..|....+.|.+|++||
T Consensus 104 ~~~v~~~~lp~~Lr~~~~id~---~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 104 LSGLSRAAYPPELRFMYYVDG---RGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp ECSCCGGGSCGGGGGSCCEET---TSGGGGHHHHHHHHHHHHTTC
T ss_pred EcCCChhhCCHHHhCeeeeec---cChHhhHHHHHHHHHHHHHhc
Confidence 99998544 454432111 123344444456688887764
No 9
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.60 E-value=5.7e-17 Score=143.40 Aligned_cols=83 Identities=18% Similarity=0.263 Sum_probs=74.6
Q ss_pred Chhh-HHHHHhhC--CCeEeecC-CCCCCCcccHHHHHHHHhccceeEeecCCccchhhhHHHHHHHHHh-hhhcCCeEE
Q 037613 1 MTNY-LYSALSRK--SIETFIDD-QLNRGDKISQSLVNAIEASTISVIIFSEGYASSRWCLDELLKILEC-KREYVQIVI 75 (553)
Q Consensus 1 f~~~-l~~~L~~~--gi~~f~d~-~~~~g~~~~~~~~~ai~~s~~~ivv~S~~y~~S~wcl~EL~~i~~~-~~~~~~~vl 75 (553)
|+.+ |+.+|+++ |+++|+|+ ++.+|+.+.++|.+||++|+++|+|+|++|++|.||+.||..++.+ .+.+++.|+
T Consensus 19 ~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~El~~a~~~~~~~~~~~vI 98 (149)
T 1fyx_A 19 WVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYELDFSHFRLFDENNDAAI 98 (149)
T ss_dssp HHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHHSCCSCCTTCGGGTTCCE
T ss_pred HHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHHHHHHHHHHHHhcCCCEEE
Confidence 6776 99999987 99999999 9999999999999999999999999999999999999999998853 355677899
Q ss_pred eEEee-eCC
Q 037613 76 PVFYR-VDP 83 (553)
Q Consensus 76 Pvfy~-v~p 83 (553)
||||+ +++
T Consensus 99 pv~~~~i~~ 107 (149)
T 1fyx_A 99 LILLEPIEK 107 (149)
T ss_dssp EEESSCCCT
T ss_pred EEEecCCCh
Confidence 99997 444
No 10
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.58 E-value=7.1e-16 Score=137.60 Aligned_cols=83 Identities=17% Similarity=0.175 Sum_probs=75.2
Q ss_pred ChhhHHH-HHh-hCCCeEeecC-CCCCCCcccHHHHHHHHhccceeEeecCCcc-chhhhHHHHHHHHHhh-hhcCCeEE
Q 037613 1 MTNYLYS-ALS-RKSIETFIDD-QLNRGDKISQSLVNAIEASTISVIIFSEGYA-SSRWCLDELLKILECK-REYVQIVI 75 (553)
Q Consensus 1 f~~~l~~-~L~-~~gi~~f~d~-~~~~g~~~~~~~~~ai~~s~~~ivv~S~~y~-~S~wcl~EL~~i~~~~-~~~~~~vl 75 (553)
||+||+. +|+ +.|+++|+|+ |+.+|+.+.++|.+||++|+.+|+|+|+||+ .|.||..|+..++.+. ..++..|+
T Consensus 27 fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~~~S~wc~~El~~a~~~~~~~~~~~vI 106 (159)
T 1t3g_A 27 FALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVI 106 (159)
T ss_dssp HHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHHHTTTTHHHHHSHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchhhcChHHHHHHHHHHHHHHhcCCCEEE
Confidence 6778776 699 7999999999 9999999999999999999999999999996 9999999999999987 66678999
Q ss_pred eEEeeeCC
Q 037613 76 PVFYRVDP 83 (553)
Q Consensus 76 Pvfy~v~p 83 (553)
||||.-.+
T Consensus 107 ~I~~~~~~ 114 (159)
T 1t3g_A 107 LIECSELR 114 (159)
T ss_dssp EEECSCCC
T ss_pred EEEecccc
Confidence 99987444
No 11
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.57 E-value=2.4e-16 Score=140.81 Aligned_cols=82 Identities=17% Similarity=0.229 Sum_probs=74.9
Q ss_pred ChhhHHHHHhhC--CCeEeecC-CCCCCCcccHHHHHHHH-hccceeEeecCCccchhhhHHHHHHHHHhh-hhcCCeEE
Q 037613 1 MTNYLYSALSRK--SIETFIDD-QLNRGDKISQSLVNAIE-ASTISVIIFSEGYASSRWCLDELLKILECK-REYVQIVI 75 (553)
Q Consensus 1 f~~~l~~~L~~~--gi~~f~d~-~~~~g~~~~~~~~~ai~-~s~~~ivv~S~~y~~S~wcl~EL~~i~~~~-~~~~~~vl 75 (553)
||++|+.+|+++ |+++|+|+ ++.+|+.+.++|.+||+ +|+++|+|+|++|++|.||+.|+..++++. +..++.|+
T Consensus 30 fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~El~~a~~~~~~~~~~~vI 109 (160)
T 2js7_A 30 FVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDFQTKFALSLSPGAHQKRLI 109 (160)
T ss_dssp HHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHHHHHHHHHHCTTHHHHTEE
T ss_pred HHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHHHHHHHHHHHHccCCCEEE
Confidence 688999999985 69999999 99999999999999999 799999999999999999999999999876 44556899
Q ss_pred eEEeeeC
Q 037613 76 PVFYRVD 82 (553)
Q Consensus 76 Pvfy~v~ 82 (553)
||||+.-
T Consensus 110 pV~~~~~ 116 (160)
T 2js7_A 110 PIKYKAM 116 (160)
T ss_dssp EEESSCC
T ss_pred EEEEccc
Confidence 9999854
No 12
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.57 E-value=2.5e-16 Score=142.99 Aligned_cols=81 Identities=22% Similarity=0.352 Sum_probs=69.5
Q ss_pred Chh-hHHHHHhh--CCCeEeecC-CCCCCCcccHHHHHHHHhccceeEeecCCccchhhhHHHHHHHHHhh-hhcCCeEE
Q 037613 1 MTN-YLYSALSR--KSIETFIDD-QLNRGDKISQSLVNAIEASTISVIIFSEGYASSRWCLDELLKILECK-REYVQIVI 75 (553)
Q Consensus 1 f~~-~l~~~L~~--~gi~~f~d~-~~~~g~~~~~~~~~ai~~s~~~ivv~S~~y~~S~wcl~EL~~i~~~~-~~~~~~vl 75 (553)
||. +|+.+|++ +|+++|+|+ ++.+|+.+.++|.+||++|+++|+|+|+||++|.||+.||..++.+. +.+++.|+
T Consensus 49 fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~El~~a~~~~~~~~~~~vI 128 (178)
T 2j67_A 49 WVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHII 128 (178)
T ss_dssp HHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGGTHHHHTTCC-------CEE
T ss_pred HHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHHHHHHHHHHHHHhcCCCEEE
Confidence 565 59999998 899999999 99999999999999999999999999999999999999999998654 45667899
Q ss_pred eEEeee
Q 037613 76 PVFYRV 81 (553)
Q Consensus 76 Pvfy~v 81 (553)
||||+-
T Consensus 129 pV~~~~ 134 (178)
T 2j67_A 129 LILLEP 134 (178)
T ss_dssp EEESSC
T ss_pred EEEecC
Confidence 999973
No 13
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.47 E-value=1e-12 Score=133.29 Aligned_cols=251 Identities=14% Similarity=0.114 Sum_probs=146.5
Q ss_pred CCCCCCCCCccchhhhHhhHHhhccccCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhh--cccCCHHHHH
Q 037613 156 ELFPHNNDRLVGVESRVVAIESLLSAAPLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREES--QRLGGLACLR 233 (553)
Q Consensus 156 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s--~~~~~~~~l~ 233 (553)
+.++..++.|+||+.+++.+.+.+...+++.|+|++|+|||||+++++++.. .+|+. ..... ........+.
T Consensus 5 ~~~~~~~~~~~gR~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 5 LRPKTRREDIFDREEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNERP-----GILID-CRELYAERGHITREELI 78 (350)
T ss_dssp CSCCCSGGGSCSCHHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHSS-----EEEEE-HHHHHHTTTCBCHHHHH
T ss_pred CCCCCChHhcCChHHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHcC-----cEEEE-eecccccccCCCHHHHH
Confidence 4455667789999999999999886568999999999999999999998752 55554 33221 0002344555
Q ss_pred HHHHHhhcc----------------CCC-----Cc-ccHHHHHHHhcC-CCeEEEEcCCCChHh---------HHHhh--
Q 037613 234 QKLLSNLFR----------------DES-----MI-PDIDLHFKRLSR-RKVLVVFDDVTCFNQ---------IESFI-- 279 (553)
Q Consensus 234 ~~ll~~l~~----------------~~~-----~~-~~~~~l~~~L~~-kr~LlVLDdv~~~~~---------l~~l~-- 279 (553)
..+...+.. ... .. +....+.+.... ++++||+||++.... +..+.
T Consensus 79 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~ 158 (350)
T 2qen_A 79 KELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYA 158 (350)
T ss_dssp HHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHH
Confidence 555443321 000 01 222333333332 499999999976332 11111
Q ss_pred -c---cc----------hhhhh----------cCCC------CCCC------------------cHHHHHHHHHHHhcCC
Q 037613 280 -G---SL----------ECRHA----------FKQN------HPDV------------------GYEELSSKVIQHAQGV 311 (553)
Q Consensus 280 -~---~~----------~~~~a----------f~~~------~~~~------------------~~~~~~~~iv~~c~gl 311 (553)
. .. ..... ++.. .+-. ...+.+.++++.|+|+
T Consensus 159 ~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~ 238 (350)
T 2qen_A 159 YDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGI 238 (350)
T ss_dssp HHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTC
T ss_pred HHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC
Confidence 0 00 00000 1000 0000 0124567899999999
Q ss_pred chhHHHHHhhhcC-CCHHHHHHHHHHHhhcCCchHHHHHHHhHhhh---cHHHHHhhhhhhcccCCCChHHHHHHHHhc-
Q 037613 312 PLALKVLGCFLFG-WEKKVWESAINKLKQILHPKIHDVLKLSYDDL---DVNEKGIFLDVACFFKSDDVYPVMKFLDAS- 386 (553)
Q Consensus 312 PLal~~~g~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L---~~~~k~~fl~~a~fp~~~~~~~l~~~~~~~- 386 (553)
|+++..++..+.. .+...+. ..+. +.+...+.-.+..+ ++..+.++..+|+ ...+...+...+...
T Consensus 239 P~~l~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~~~~~~~ 309 (350)
T 2qen_A 239 PGWLVVFGVEYLRNGDFGRAM---KRTL----EVAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIRDYLAVKG 309 (350)
T ss_dssp HHHHHHHHHHHHHHCCHHHHH---HHHH----HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccccHhHHH---HHHH----HHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHHHHHHHh
Confidence 9999999876532 2332221 1111 11112222223333 7889999999998 345666666554322
Q ss_pred -Ccc---HHHHHHHHhhcCceeeeCCCceeh-hHHHHHHHH
Q 037613 387 -GFH---LEIGISVLADKSLIDVNPYDRITM-HDLLQELGR 422 (553)
Q Consensus 387 -g~~---~~~~l~~L~~~sLi~~~~~~~~~m-Hdlv~~~a~ 422 (553)
+.. ...+++.|.+.+||... +++|.+ |++++.+.+
T Consensus 310 ~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 310 TKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVLR 349 (350)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHHc
Confidence 332 35689999999999877 567765 788887653
No 14
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.39 E-value=5.9e-12 Score=127.90 Aligned_cols=252 Identities=13% Similarity=0.131 Sum_probs=141.4
Q ss_pred CCCCCCCCCccchhhhHhhHHhhccccCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhh--cccCCHHHHH
Q 037613 156 ELFPHNNDRLVGVESRVVAIESLLSAAPLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREES--QRLGGLACLR 233 (553)
Q Consensus 156 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s--~~~~~~~~l~ 233 (553)
+.++..++.|+||+.+++.|.+ +.. +++.|+|++|+|||||+++++++.... .+|+. ..... .. .+...+.
T Consensus 6 ~~~~~~~~~~~gR~~el~~L~~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~-~~~~~~~~~-~~~~~~~ 78 (357)
T 2fna_A 6 TSPKDNRKDFFDREKEIEKLKG-LRA-PITLVLGLRRTGKSSIIKIGINELNLP---YIYLD-LRKFEERNY-ISYKDFL 78 (357)
T ss_dssp SSCCCSGGGSCCCHHHHHHHHH-TCS-SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEE-GGGGTTCSC-CCHHHHH
T ss_pred CCCCCCHHHhcChHHHHHHHHH-hcC-CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEE-chhhccccC-CCHHHHH
Confidence 4455567789999999999999 876 899999999999999999999876532 45654 33210 00 1223333
Q ss_pred HHHHHhhc-------------cC-------CC---------CcccHHHHHHHhcC---CCeEEEEcCCCChH-----h--
Q 037613 234 QKLLSNLF-------------RD-------ES---------MIPDIDLHFKRLSR---RKVLVVFDDVTCFN-----Q-- 274 (553)
Q Consensus 234 ~~ll~~l~-------------~~-------~~---------~~~~~~~l~~~L~~---kr~LlVLDdv~~~~-----~-- 274 (553)
..+...+. .. .. .......+.+.+.. ++++||+||++..+ +
T Consensus 79 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~ 158 (357)
T 2fna_A 79 LELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLL 158 (357)
T ss_dssp HHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCH
T ss_pred HHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHH
Confidence 33322211 00 00 01122333333332 48999999996532 1
Q ss_pred --HHHhhc---cc----------hhhh----------hcCCC------CCC--CcHHHH--------------HHHHHHH
Q 037613 275 --IESFIG---SL----------ECRH----------AFKQN------HPD--VGYEEL--------------SSKVIQH 307 (553)
Q Consensus 275 --l~~l~~---~~----------~~~~----------af~~~------~~~--~~~~~~--------------~~~iv~~ 307 (553)
+..+.. .. .... .++.. .+- ++..++ ...|++.
T Consensus 159 ~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~i~~~ 238 (357)
T 2fna_A 159 PALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDYEVVYEK 238 (357)
T ss_dssp HHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCHHHHHHH
T ss_pred HHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Confidence 222211 11 0000 01110 010 011111 1578999
Q ss_pred hcCCchhHHHHHhhhcC-CCHHHHHHHHHHHhhcCCchHHHHHH-HhH--hhhcHHHHHhhhhhhcccCCCChHHHHHHH
Q 037613 308 AQGVPLALKVLGCFLFG-WEKKVWESAINKLKQILHPKIHDVLK-LSY--DDLDVNEKGIFLDVACFFKSDDVYPVMKFL 383 (553)
Q Consensus 308 c~glPLal~~~g~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~l~-~Sy--~~L~~~~k~~fl~~a~fp~~~~~~~l~~~~ 383 (553)
|+|+|+++..++..+.. .+...|.. .+.......+...+. +.+ ..|++..+.++..+|+ .. +...+....
T Consensus 239 t~G~P~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~--g~-~~~~l~~~~ 312 (357)
T 2fna_A 239 IGGIPGWLTYFGFIYLDNKNLDFAIN---QTLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSK--CG-KWSDVKRAL 312 (357)
T ss_dssp HCSCHHHHHHHHHHHHHHCCHHHHHH---HHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT--CB-CHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHccccchHHHHH---HHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc--CC-CHHHHHHHH
Confidence 99999999999887642 33333321 111100011111121 111 1688999999999998 33 666665433
Q ss_pred H-hcC--c---cHHHHHHHHhhcCceeeeCCCcee-hhHHHHHHH
Q 037613 384 D-ASG--F---HLEIGISVLADKSLIDVNPYDRIT-MHDLLQELG 421 (553)
Q Consensus 384 ~-~~g--~---~~~~~l~~L~~~sLi~~~~~~~~~-mHdlv~~~a 421 (553)
. ..| . ....+++.|++.+||... ++.|+ -|++++++.
T Consensus 313 ~~~~g~~~~~~~~~~~L~~L~~~gli~~~-~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 313 ELEEGIEISDSEIYNYLTQLTKHSWIIKE-GEKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHCSCCCHHHHHHHHHHHHHTTSEEES-SSCEEESSHHHHHHT
T ss_pred HHhcCCCCCHHHHHHHHHHHHhCCCEEec-CCEEEecCHHHHHhh
Confidence 1 223 2 235689999999999876 46777 578888764
No 15
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.22 E-value=1.1e-10 Score=121.14 Aligned_cols=246 Identities=14% Similarity=0.099 Sum_probs=140.3
Q ss_pred CCCCccchhhhHhhHHhhc-c--------ccCEEEE--eecCCCchHHHHHHHHhhhcCC-----CCc-eEEEEechhhh
Q 037613 161 NNDRLVGVESRVVAIESLL-S--------AAPLLAI--WGIGGIGKTTIARATFDKISSD-----FEG-SCFLENVREES 223 (553)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L-~--------~~~vi~I--~G~gGiGKTtLA~~v~~~~~~~-----F~~-~~~~~~~~~~s 223 (553)
.+..++||+.+++++...+ . ..+.+.| +|++|+||||||+++++..... +.. .+|+. . .
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~-~---~ 95 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN-A---F 95 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE-G---G
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE-C---C
Confidence 3478999999999999988 3 2456777 9999999999999999876542 232 34443 2 2
Q ss_pred cccCCHHHHHHHHHHhhccCCC--Cc---ccHHHHHHHhc--CCCeEEEEcCCCCh--------HhHHHh---h------
Q 037613 224 QRLGGLACLRQKLLSNLFRDES--MI---PDIDLHFKRLS--RRKVLVVFDDVTCF--------NQIESF---I------ 279 (553)
Q Consensus 224 ~~~~~~~~l~~~ll~~l~~~~~--~~---~~~~~l~~~L~--~kr~LlVLDdv~~~--------~~l~~l---~------ 279 (553)
.. .....+...++..++.... .. .....+.+.+. +++++||+||++.. +.+..+ .
T Consensus 96 ~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~ 174 (412)
T 1w5s_A 96 NA-PNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR 174 (412)
T ss_dssp GC-CSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT
T ss_pred CC-CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccC
Confidence 22 5677888888887765421 11 23445555554 67899999999763 222211 1
Q ss_pred c--cc-----------h----h---h---hhcCCC--CCC---------------------CcHHHHHHHHHHHhc----
Q 037613 280 G--SL-----------E----C---R---HAFKQN--HPD---------------------VGYEELSSKVIQHAQ---- 309 (553)
Q Consensus 280 ~--~~-----------~----~---~---~af~~~--~~~---------------------~~~~~~~~~iv~~c~---- 309 (553)
+ .. + . . ..|... -++ .-..+....|++.|+
T Consensus 175 ~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 254 (412)
T 1w5s_A 175 DGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKG 254 (412)
T ss_dssp TSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGT
T ss_pred CCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhcc
Confidence 1 11 0 0 0 001100 000 011345667888899
Q ss_pred --CCchhHHHHHhhh-c-----C---CCHHHHHHHHHHHhhcCCchHHHHHHHhHhhhcHHHHHhhhhhhcccC----CC
Q 037613 310 --GVPLALKVLGCFL-F-----G---WEKKVWESAINKLKQILHPKIHDVLKLSYDDLDVNEKGIFLDVACFFK----SD 374 (553)
Q Consensus 310 --glPLal~~~g~~L-~-----~---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~~a~fp~----~~ 374 (553)
|.|..+..+.... . + .+.+.+..++..... ...+.-+++.||++.+.++..++.+.. .+
T Consensus 255 ~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~ 328 (412)
T 1w5s_A 255 GDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWI 328 (412)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSB
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCc
Confidence 9996555444321 1 1 133444433332210 233445678899999999999997642 23
Q ss_pred ChHHHHHHH-----HhcCcc------HHHHHHHHhhcCceeeeC-----CCceehhHHH
Q 037613 375 DVYPVMKFL-----DASGFH------LEIGISVLADKSLIDVNP-----YDRITMHDLL 417 (553)
Q Consensus 375 ~~~~l~~~~-----~~~g~~------~~~~l~~L~~~sLi~~~~-----~~~~~mHdlv 417 (553)
+...+...+ ...|.. ...+++.|.+.+||.... .|+|++|.+.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 329 NAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred cHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 444433222 222321 346799999999998753 3445555443
No 16
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.14 E-value=2e-09 Score=110.42 Aligned_cols=229 Identities=13% Similarity=0.063 Sum_probs=134.2
Q ss_pred CCccchhhhHhhHHhhccc------cCEEEEeecCCCchHHHHHHHHhhhcCC------C-Cc-eEEEEechhhhcccC-
Q 037613 163 DRLVGVESRVVAIESLLSA------APLLAIWGIGGIGKTTIARATFDKISSD------F-EG-SCFLENVREESQRLG- 227 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~------~~vi~I~G~gGiGKTtLA~~v~~~~~~~------F-~~-~~~~~~~~~~s~~~~- 227 (553)
+.++||+.+++++..++.. .+.+.|+|++|+||||||+.+++..... + .. .+++. . ... .
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~-~---~~~-~~ 94 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN-C---REV-GG 94 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE-H---HHH-CS
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE-C---ccC-CC
Confidence 6799999999999987754 6789999999999999999999976332 2 22 34443 2 222 3
Q ss_pred CHHHHHHHHHHhhccCCCC------cccHHHHHHHhcCCCeEEEEcCCCChH------h-HHHhhcc---c---------
Q 037613 228 GLACLRQKLLSNLFRDESM------IPDIDLHFKRLSRRKVLVVFDDVTCFN------Q-IESFIGS---L--------- 282 (553)
Q Consensus 228 ~~~~l~~~ll~~l~~~~~~------~~~~~~l~~~L~~kr~LlVLDdv~~~~------~-l~~l~~~---~--------- 282 (553)
....+...++..+.+.... ......+.+.+..++.+|||||++... . +..+... .
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~ 174 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDI 174 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSST
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCC
Confidence 6677777777777433111 134556677777777799999997543 2 3333321 0
Q ss_pred -------------------------------hhhh---hcCCCCCCCcHHHHHHHHHHHhc---CCch-hHHHHHhhh--
Q 037613 283 -------------------------------ECRH---AFKQNHPDVGYEELSSKVIQHAQ---GVPL-ALKVLGCFL-- 322 (553)
Q Consensus 283 -------------------------------~~~~---af~~~~~~~~~~~~~~~iv~~c~---glPL-al~~~g~~L-- 322 (553)
+... .|.... -..+....+++.++ |.|. |+..+-...
T Consensus 175 ~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~ 251 (384)
T 2qby_B 175 NVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGT---YDDEILSYIAAISAKEHGDARKAVNLLFRAAQL 251 (384)
T ss_dssp TTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTS---CCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCC---cCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 0000 111000 01234455666666 6665 333322221
Q ss_pred c----CCCHHHHHHHHHHHhhcCCchHHHHHHHhHhhhcHHHHHhhhhhhcccC-CCChHHHHHHHHhcCcc------HH
Q 037613 323 F----GWEKKVWESAINKLKQILHPKIHDVLKLSYDDLDVNEKGIFLDVACFFK-SDDVYPVMKFLDASGFH------LE 391 (553)
Q Consensus 323 ~----~~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~~a~fp~-~~~~~~l~~~~~~~g~~------~~ 391 (553)
. ..+.+.+..++.+.. ...+.-+++.|+++.+..+..++.... +...+....+....|.. ..
T Consensus 252 a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 324 (384)
T 2qby_B 252 ASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFS 324 (384)
T ss_dssp TTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHH
T ss_pred hcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHH
Confidence 1 135666666655542 234667788999988888887776111 10011222322222311 24
Q ss_pred HHHHHHhhcCceeee
Q 037613 392 IGISVLADKSLIDVN 406 (553)
Q Consensus 392 ~~l~~L~~~sLi~~~ 406 (553)
.+++.|.++|+++..
T Consensus 325 ~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 325 DIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHTTSEEEE
T ss_pred HHHHHHHhCCCEEEE
Confidence 578899999999864
No 17
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.01 E-value=7.7e-09 Score=105.89 Aligned_cols=107 Identities=21% Similarity=0.308 Sum_probs=72.8
Q ss_pred CCCCCccchhhhHhhHHhhccc------cCEEEEeecCCCchHHHHHHHHhhhcCCCC---ceEEEEechhhhcccCCHH
Q 037613 160 HNNDRLVGVESRVVAIESLLSA------APLLAIWGIGGIGKTTIARATFDKISSDFE---GSCFLENVREESQRLGGLA 230 (553)
Q Consensus 160 ~~~~~~vGr~~~~~~l~~~L~~------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~---~~~~~~~~~~~s~~~~~~~ 230 (553)
..++.|+||+.+++.+.+++.. ...+.|+|++|+||||||+.+++.....+. ..+|+. . ... ....
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~-~---~~~-~~~~ 91 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN-T---RQI-DTPY 91 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE-H---HHH-CSHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE-C---CCC-CCHH
Confidence 3447899999999999998874 678999999999999999999997765442 234443 2 222 4555
Q ss_pred HHHHHHHHhhccCCCC----c-ccHHHHHHHhc--CCCeEEEEcCCCC
Q 037613 231 CLRQKLLSNLFRDESM----I-PDIDLHFKRLS--RRKVLVVFDDVTC 271 (553)
Q Consensus 231 ~l~~~ll~~l~~~~~~----~-~~~~~l~~~L~--~kr~LlVLDdv~~ 271 (553)
.+...++..++..... . +....+.+.+. +++.+||+|+++.
T Consensus 92 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~ 139 (386)
T 2qby_A 92 RVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDA 139 (386)
T ss_dssp HHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHH
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhh
Confidence 6666666665433111 1 22344445554 4489999999864
No 18
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.95 E-value=5e-08 Score=100.10 Aligned_cols=106 Identities=16% Similarity=0.184 Sum_probs=72.7
Q ss_pred CCCccchhhhHhhHHhhccc------cC--EEEEeecCCCchHHHHHHHHhhhcCCC-CceEEEEechhhhcccCCHHHH
Q 037613 162 NDRLVGVESRVVAIESLLSA------AP--LLAIWGIGGIGKTTIARATFDKISSDF-EGSCFLENVREESQRLGGLACL 232 (553)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~------~~--vi~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~s~~~~~~~~l 232 (553)
++.++||+.+++++...+.. .. .+.|+|++|+||||||+.+++...... ...+++. .+.. .....+
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~~-~~~~~~ 90 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFIY-RNFTAI 90 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTTC-CSHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----CccC-CCHHHH
Confidence 47799999999999998865 24 899999999999999999999776543 2234443 1222 456677
Q ss_pred HHHHHHhhccCCC--Cc---ccHHHHHHHhc--CCCeEEEEcCCCCh
Q 037613 233 RQKLLSNLFRDES--MI---PDIDLHFKRLS--RRKVLVVFDDVTCF 272 (553)
Q Consensus 233 ~~~ll~~l~~~~~--~~---~~~~~l~~~L~--~kr~LlVLDdv~~~ 272 (553)
...++..++.... .. .....+...+. +++.+||||+++..
T Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l 137 (389)
T 1fnn_A 91 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL 137 (389)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS
T ss_pred HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc
Confidence 7777777654311 11 22334444443 56889999999753
No 19
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.91 E-value=7.8e-08 Score=98.41 Aligned_cols=107 Identities=18% Similarity=0.263 Sum_probs=74.1
Q ss_pred CCCCccchhhhHhhHHhhccc------cCEEEEeecCCCchHHHHHHHHhhhcCCC-----Cc-eEEEEechhhhcccCC
Q 037613 161 NNDRLVGVESRVVAIESLLSA------APLLAIWGIGGIGKTTIARATFDKISSDF-----EG-SCFLENVREESQRLGG 228 (553)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F-----~~-~~~~~~~~~~s~~~~~ 228 (553)
.++.++||+.+++++..++.. .+.+.|+|++|+||||||+.+++.....+ .. .+++. . ... .+
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~-~---~~~-~~ 91 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN-A---RHR-ET 91 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE-T---TTS-CS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE-C---CcC-CC
Confidence 347899999999999998833 67899999999999999999998764321 22 23343 2 222 55
Q ss_pred HHHHHHHHHHhhccCCCCc-----ccHHHHHHHhc--CCCeEEEEcCCCCh
Q 037613 229 LACLRQKLLSNLFRDESMI-----PDIDLHFKRLS--RRKVLVVFDDVTCF 272 (553)
Q Consensus 229 ~~~l~~~ll~~l~~~~~~~-----~~~~~l~~~L~--~kr~LlVLDdv~~~ 272 (553)
...+...++..++...... +....+.+.+. +++.+||||+++..
T Consensus 92 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l 142 (387)
T 2v1u_A 92 PYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFL 142 (387)
T ss_dssp HHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHH
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhh
Confidence 6677778887775531111 22445555553 45789999999864
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.90 E-value=6.1e-10 Score=126.49 Aligned_cols=81 Identities=17% Similarity=0.238 Sum_probs=72.4
Q ss_pred hhHHHHHhh-----CCCeEeecC-CCCCCCcccHHHHHHHHhccceeEeecCCccchhhhHHHHHHHHHhh-hhcCCeEE
Q 037613 3 NYLYSALSR-----KSIETFIDD-QLNRGDKISQSLVNAIEASTISVIIFSEGYASSRWCLDELLKILECK-REYVQIVI 75 (553)
Q Consensus 3 ~~l~~~L~~-----~gi~~f~d~-~~~~g~~~~~~~~~ai~~s~~~ivv~S~~y~~S~wcl~EL~~i~~~~-~~~~~~vl 75 (553)
.+|...|+. .|+++|+++ |+.+|+.+.++|.+||++||.+|+|+|++|+.|.||..|+..++.+. +.++..|+
T Consensus 687 ~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~wc~~e~~~a~~~~~~~~~~~~i 766 (844)
T 3j0a_A 687 NALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGWCLEAFSYAQGRCLSDLNSALI 766 (844)
T ss_dssp HTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHTSTTHHHHHHHSCCCCSSCTTEE
T ss_pred HHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccChHHHHHHHHHHHHHHHhcCCcEE
Confidence 568888874 699999999 99999999999999999999999999999999999999999887655 56677899
Q ss_pred eEEeeeCC
Q 037613 76 PVFYRVDP 83 (553)
Q Consensus 76 Pvfy~v~p 83 (553)
||||+--|
T Consensus 767 ~i~~~~~~ 774 (844)
T 3j0a_A 767 MVVVGSLS 774 (844)
T ss_dssp EEESSCCC
T ss_pred EEEeccCC
Confidence 99998544
No 21
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.55 E-value=4.9e-07 Score=85.63 Aligned_cols=51 Identities=29% Similarity=0.393 Sum_probs=43.0
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
|.....++||+..++.+...+.. .+.+.|+|++|+||||||+.+++.....
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 44456799999999999998876 3589999999999999999999876543
No 22
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.40 E-value=5e-07 Score=85.61 Aligned_cols=74 Identities=16% Similarity=0.256 Sum_probs=52.2
Q ss_pred cccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCC-C-CCCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCccc
Q 037613 470 IRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESP-G-FAEVRFLHRHGYPLKSLPSNI-NQKKLVVIEMPHSNIQQ 546 (553)
Q Consensus 470 ~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i-~-L~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~~s~i~~ 546 (553)
..++...|..+.+|++|+|+++ .+..+|... + +.+|++|+++++.++.+|..+ ++.+|++|+|++++|..
T Consensus 77 ~~i~~~~~~~l~~L~~L~Ls~N-------~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 149 (229)
T 3e6j_A 77 GALPVGVFDSLTQLTVLDLGTN-------QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS 149 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-------CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCC
T ss_pred CCcChhhcccCCCcCEEECCCC-------cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCc
Confidence 3445566777777777777776 444466543 4 777788888777777777777 67788888888777777
Q ss_pred CCCC
Q 037613 547 FWDG 550 (553)
Q Consensus 547 lp~~ 550 (553)
+|.+
T Consensus 150 ~~~~ 153 (229)
T 3e6j_A 150 IPHG 153 (229)
T ss_dssp CCTT
T ss_pred cCHH
Confidence 7653
No 23
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.40 E-value=5.3e-07 Score=81.58 Aligned_cols=81 Identities=20% Similarity=0.259 Sum_probs=65.1
Q ss_pred cCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCC-C-CCCeeEEEecCCCCCCCCCC-C-CCCCccEEE
Q 037613 463 DMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESP-G-FAEVRFLHRHGYPLKSLPSN-I-NQKKLVVIE 538 (553)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i-~-L~~Lr~L~l~~~~l~~LP~~-i-~L~~L~~L~ 538 (553)
+++.+.-..+++..|.++++|+.|+|+++ .+..+|..+ + |.+|++|+|+++.++.+|.. | ++.+|++|+
T Consensus 39 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-------~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 39 WLNNNQITKLEPGVFDHLVNLQQLYFNSN-------KLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSS-------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred EeCCCCccccCHHHhcCCcCCCEEECCCC-------CCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 33333344566778999999999999998 566688765 4 99999999999999999987 6 699999999
Q ss_pred cCCCCcccCCCC
Q 037613 539 MPHSNIQQFWDG 550 (553)
Q Consensus 539 l~~s~i~~lp~~ 550 (553)
|+++.+.-.|.+
T Consensus 112 L~~N~~~c~~~~ 123 (174)
T 2r9u_A 112 LYNNPWDCECRD 123 (174)
T ss_dssp CCSSCBCTTBGG
T ss_pred eCCCCccccccc
Confidence 999988776653
No 24
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.36 E-value=7.4e-07 Score=84.42 Aligned_cols=88 Identities=17% Similarity=0.212 Sum_probs=70.9
Q ss_pred cccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCC-C-CCCeeEEEecCCCCCCCCCCC--C
Q 037613 455 KSIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESP-G-FAEVRFLHRHGYPLKSLPSNI--N 530 (553)
Q Consensus 455 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i-~-L~~Lr~L~l~~~~l~~LP~~i--~ 530 (553)
..++.+.+.. +.-..+.+..|..+++|+.|+|+++ .+..+|... + +.+|++|+|++|.++.+|... .
T Consensus 40 ~~L~~L~Ls~--n~i~~~~~~~~~~l~~L~~L~L~~N-------~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 110 (229)
T 3e6j_A 40 TNAQILYLHD--NQITKLEPGVFDSLINLKELYLGSN-------QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDR 110 (229)
T ss_dssp TTCSEEECCS--SCCCCCCTTTTTTCTTCCEEECCSS-------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCEEEcCC--CccCccCHHHhhCccCCcEEECCCC-------CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCc
Confidence 3444444443 3334556778999999999999998 556688654 5 999999999999999999874 6
Q ss_pred CCCccEEEcCCCCcccCCCCC
Q 037613 531 QKKLVVIEMPHSNIQQFWDGT 551 (553)
Q Consensus 531 L~~L~~L~l~~s~i~~lp~~~ 551 (553)
+.+|++|+|++++|..+|.++
T Consensus 111 l~~L~~L~Ls~N~l~~lp~~~ 131 (229)
T 3e6j_A 111 LVHLKELFMCCNKLTELPRGI 131 (229)
T ss_dssp CTTCCEEECCSSCCCSCCTTG
T ss_pred chhhCeEeccCCcccccCccc
Confidence 999999999999999999765
No 25
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.35 E-value=1.4e-06 Score=81.27 Aligned_cols=51 Identities=25% Similarity=0.335 Sum_probs=42.7
Q ss_pred CCCCCCCccchhhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 158 FPHNNDRLVGVESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 158 ~~~~~~~~vGr~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
.|.....++|++..++.+..++.. .+.+.|+|++|+|||++|+.+++.+..
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~ 64 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG 64 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 344556799999999999999876 445999999999999999999987643
No 26
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.31 E-value=4.2e-07 Score=101.14 Aligned_cols=83 Identities=14% Similarity=0.283 Sum_probs=63.9
Q ss_pred cccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCCCCCC-CCC
Q 037613 455 KSIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSLPSNI-NQK 532 (553)
Q Consensus 455 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~LP~~i-~L~ 532 (553)
..++.+.|...... .+ +..|..+++|++|+|++| .+..+|..++ |.+|++|+|++|.++.||..| +|.
T Consensus 247 ~~L~~L~Ls~N~l~--~l-p~~~~~l~~L~~L~Ls~N-------~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~ 316 (727)
T 4b8c_D 247 DFLTRLYLNGNSLT--EL-PAEIKNLSNLRVLDLSHN-------RLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLC 316 (727)
T ss_dssp CSCSCCBCTTSCCS--CC-CGGGGGGTTCCEEECTTS-------CCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCT
T ss_pred CCCCEEEeeCCcCc--cc-ChhhhCCCCCCEEeCcCC-------cCCccChhhcCCCCCCEEECCCCCCCccChhhhcCC
Confidence 44555555544322 33 456788999999999988 5566888886 899999999999999999888 799
Q ss_pred CccEEEcCCCCcccC
Q 037613 533 KLVVIEMPHSNIQQF 547 (553)
Q Consensus 533 ~L~~L~l~~s~i~~l 547 (553)
+|++|+|+++.+...
T Consensus 317 ~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 317 NLQFLGVEGNPLEKQ 331 (727)
T ss_dssp TCCCEECTTSCCCSH
T ss_pred CccEEeCCCCccCCC
Confidence 999999999988754
No 27
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.31 E-value=2.7e-06 Score=77.33 Aligned_cols=47 Identities=21% Similarity=0.312 Sum_probs=41.3
Q ss_pred CCCCccchhhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 161 NNDRLVGVESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
....++||++.++++.+.+.. .+.+.|+|++|+|||+||+.+++.+.
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 346799999999999999876 57889999999999999999998654
No 28
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.30 E-value=1.4e-06 Score=78.72 Aligned_cols=87 Identities=21% Similarity=0.321 Sum_probs=58.8
Q ss_pred ccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCC-C-CCCeeEEEecCCCCCCCCCCC--CC
Q 037613 456 SIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESP-G-FAEVRFLHRHGYPLKSLPSNI--NQ 531 (553)
Q Consensus 456 ~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i-~-L~~Lr~L~l~~~~l~~LP~~i--~L 531 (553)
.++.+.+.... -..+++..|..+++|+.|+|+++ .+..+|... + +.+|++|+++++.++.+|... ++
T Consensus 29 ~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n-------~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 99 (177)
T 2o6r_A 29 SATRLELESNK--LQSLPHGVFDKLTQLTKLSLSQN-------QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKL 99 (177)
T ss_dssp TCSEEECCSSC--CCCCCTTTTTTCTTCSEEECCSS-------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCcEEEeCCCc--ccEeCHHHhcCcccccEEECCCC-------cceEeChhHccCCCccCEEECCCCCccccCHHHhhCC
Confidence 34444443332 23455666778888888888877 444466543 4 788888888888888887753 58
Q ss_pred CCccEEEcCCCCcccCCCCC
Q 037613 532 KKLVVIEMPHSNIQQFWDGT 551 (553)
Q Consensus 532 ~~L~~L~l~~s~i~~lp~~~ 551 (553)
.+|++|+|+++++..+|.++
T Consensus 100 ~~L~~L~l~~N~l~~~~~~~ 119 (177)
T 2o6r_A 100 TQLKELALDTNQLKSVPDGI 119 (177)
T ss_dssp TTCCEEECCSSCCSCCCTTT
T ss_pred cccCEEECcCCcceEeCHHH
Confidence 88888888888887777653
No 29
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.30 E-value=1.3e-06 Score=82.09 Aligned_cols=74 Identities=19% Similarity=0.345 Sum_probs=56.0
Q ss_pred cccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCC-C-CCCeeEEEecCCCCCCCCC-CC-CCCCccEEEcCCCCcc
Q 037613 470 IRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESP-G-FAEVRFLHRHGYPLKSLPS-NI-NQKKLVVIEMPHSNIQ 545 (553)
Q Consensus 470 ~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i-~-L~~Lr~L~l~~~~l~~LP~-~i-~L~~L~~L~l~~s~i~ 545 (553)
..+.+..|..+++|++|+|+++ .+..+|..+ + +.+|++|+|+++.++.+|. .| ++.+|++|+|++++|.
T Consensus 69 ~~~~~~~~~~l~~L~~L~Ls~N-------~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 141 (220)
T 2v9t_B 69 SELAPDAFQGLRSLNSLVLYGN-------KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141 (220)
T ss_dssp CEECTTTTTTCSSCCEEECCSS-------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCcCHHHhhCCcCCCEEECCCC-------cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC
Confidence 3455677888888888888877 555577654 4 8888888888888888754 45 6888888888888888
Q ss_pred cCCCC
Q 037613 546 QFWDG 550 (553)
Q Consensus 546 ~lp~~ 550 (553)
.+|.+
T Consensus 142 ~~~~~ 146 (220)
T 2v9t_B 142 TIAKG 146 (220)
T ss_dssp CCCTT
T ss_pred EECHH
Confidence 87764
No 30
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.29 E-value=1.2e-06 Score=82.42 Aligned_cols=85 Identities=20% Similarity=0.279 Sum_probs=68.4
Q ss_pred ccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCcccc-CCCCC-CCCeeEEEecCCCCCCCCCCC--CC
Q 037613 456 SIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYL-QESPG-FAEVRFLHRHGYPLKSLPSNI--NQ 531 (553)
Q Consensus 456 ~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~l-p~~i~-L~~Lr~L~l~~~~l~~LP~~i--~L 531 (553)
.++.+.+... .-..+++..|..+++|+.|+|+++ .+..+ |..++ |.+|++|+|+++.++.+|..+ ++
T Consensus 33 ~l~~L~l~~n--~i~~i~~~~~~~l~~L~~L~Ls~N-------~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l 103 (220)
T 2v9t_B 33 TITEIRLEQN--TIKVIPPGAFSPYKKLRRIDLSNN-------QISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGL 103 (220)
T ss_dssp TCCEEECCSS--CCCEECTTSSTTCTTCCEEECCSS-------CCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCEEECCCC--cCCCcCHhHhhCCCCCCEEECCCC-------cCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCC
Confidence 4444444433 334567778999999999999998 45556 56675 999999999999999999875 69
Q ss_pred CCccEEEcCCCCcccCCC
Q 037613 532 KKLVVIEMPHSNIQQFWD 549 (553)
Q Consensus 532 ~~L~~L~l~~s~i~~lp~ 549 (553)
.+|++|+|++++|..++.
T Consensus 104 ~~L~~L~L~~N~l~~~~~ 121 (220)
T 2v9t_B 104 FSLQLLLLNANKINCLRV 121 (220)
T ss_dssp TTCCEEECCSSCCCCCCT
T ss_pred CCCCEEECCCCCCCEeCH
Confidence 999999999999999864
No 31
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.28 E-value=2.7e-06 Score=77.01 Aligned_cols=48 Identities=25% Similarity=0.306 Sum_probs=41.6
Q ss_pred CCCCccchhhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 161 NNDRLVGVESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
....++||+.+++.+.+.+.. .+.+.|+|++|+||||||+.+++....
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 346799999999999998876 677899999999999999999987643
No 32
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.24 E-value=2e-06 Score=77.35 Aligned_cols=79 Identities=20% Similarity=0.277 Sum_probs=62.9
Q ss_pred cCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCC-C-CCCeeEEEecCCCCCCCCCC-C-CCCCccEEE
Q 037613 463 DMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESP-G-FAEVRFLHRHGYPLKSLPSN-I-NQKKLVVIE 538 (553)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i-~-L~~Lr~L~l~~~~l~~LP~~-i-~L~~L~~L~ 538 (553)
+++.+.-..+++..|..+++|+.|+|+++ .+..+|..+ + |.+|++|+|+++.++.+|.. | ++.+|++|+
T Consensus 36 ~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-------~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 36 YLYDNQITKLEPGVFDRLTQLTRLDLDNN-------QLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSS-------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred EcCCCcCCccChhhhcCcccCCEEECCCC-------CcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 33444344566788999999999999998 566688765 4 99999999999999999986 6 699999999
Q ss_pred cCCCCcccCC
Q 037613 539 MPHSNIQQFW 548 (553)
Q Consensus 539 l~~s~i~~lp 548 (553)
|+++.+.-.+
T Consensus 109 L~~N~~~c~c 118 (170)
T 3g39_A 109 LLNNPWDCAC 118 (170)
T ss_dssp CCSSCBCTTB
T ss_pred eCCCCCCCCc
Confidence 9998765443
No 33
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.23 E-value=2.1e-06 Score=77.61 Aligned_cols=63 Identities=13% Similarity=0.260 Sum_probs=55.6
Q ss_pred CCCcEEEeecccCCCCCCCccccC-CCCC-CCCeeEEEecCCCCCCCCCCC--CCCCccEEEcCCCCcccCCCC
Q 037613 481 HKLRFLKFYNSINGDNRCKVSYLQ-ESPG-FAEVRFLHRHGYPLKSLPSNI--NQKKLVVIEMPHSNIQQFWDG 550 (553)
Q Consensus 481 ~~LrvL~l~~~~~~~~~~~l~~lp-~~i~-L~~Lr~L~l~~~~l~~LP~~i--~L~~L~~L~l~~s~i~~lp~~ 550 (553)
.+|+.|+|+++ .+..+| ..++ |.+|++|+|+++.++.+|..+ ++.+|++|+|++++|..+|.+
T Consensus 33 ~~L~~L~Ls~N-------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~ 99 (174)
T 2r9u_A 33 TDKQRLWLNNN-------QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG 99 (174)
T ss_dssp TTCSEEECCSS-------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCcEEEeCCC-------CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHH
Confidence 78999999999 455574 5665 999999999999999999875 699999999999999999976
No 34
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.21 E-value=2.3e-06 Score=80.44 Aligned_cols=71 Identities=6% Similarity=0.134 Sum_probs=49.6
Q ss_pred cccChhHhhcCCCCcEEEeecccCCCCCCCccccCCC-CC-CCCeeEEEecCCCCCCCC-CCC-CCCCccEEEcCCCCcc
Q 037613 470 IRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQES-PG-FAEVRFLHRHGYPLKSLP-SNI-NQKKLVVIEMPHSNIQ 545 (553)
Q Consensus 470 ~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~-i~-L~~Lr~L~l~~~~l~~LP-~~i-~L~~L~~L~l~~s~i~ 545 (553)
..+++..|..+++|+.|+|+++ .+..+|.. ++ |.+|++|+++++.++.+| ..| ++.+|++|+|++++|.
T Consensus 70 ~~i~~~~~~~l~~L~~L~Ls~N-------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 142 (220)
T 2v70_A 70 TDIEEGAFEGASGVNEILLTSN-------RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142 (220)
T ss_dssp CEECTTTTTTCTTCCEEECCSS-------CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred CEECHHHhCCCCCCCEEECCCC-------ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCC
Confidence 3455566777777777777777 34445543 44 778888888888777774 455 5788888888887777
Q ss_pred cC
Q 037613 546 QF 547 (553)
Q Consensus 546 ~l 547 (553)
.+
T Consensus 143 ~~ 144 (220)
T 2v70_A 143 TV 144 (220)
T ss_dssp CB
T ss_pred EE
Confidence 77
No 35
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.20 E-value=3.2e-06 Score=78.50 Aligned_cols=87 Identities=18% Similarity=0.306 Sum_probs=60.6
Q ss_pred cccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCC-C-CCCeeEEEecCCCCCCCCCC-C-C
Q 037613 455 KSIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESP-G-FAEVRFLHRHGYPLKSLPSN-I-N 530 (553)
Q Consensus 455 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i-~-L~~Lr~L~l~~~~l~~LP~~-i-~ 530 (553)
..++.+.+... .-..+++..|..+++|++|+|+++ .+..+|... + +.+|++|+++++.++.+|.. + +
T Consensus 52 ~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~Ls~n-------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 122 (208)
T 2o6s_A 52 TSLTQLYLGGN--KLQSLPNGVFNKLTSLTYLNLSTN-------QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDK 122 (208)
T ss_dssp TTCSEEECCSS--CCCCCCTTTTTTCTTCCEEECCSS-------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCcEEECCCC--ccCccChhhcCCCCCcCEEECCCC-------cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhcc
Confidence 34444444333 223456666778888888888877 455566553 4 88888888888888888876 4 5
Q ss_pred CCCccEEEcCCCCcccCCCC
Q 037613 531 QKKLVVIEMPHSNIQQFWDG 550 (553)
Q Consensus 531 L~~L~~L~l~~s~i~~lp~~ 550 (553)
+.+|++|+|+++.+..+|.+
T Consensus 123 l~~L~~L~l~~N~l~~~~~~ 142 (208)
T 2o6s_A 123 LTQLKDLRLYQNQLKSVPDG 142 (208)
T ss_dssp CTTCCEEECCSSCCSCCCTT
T ss_pred CCcCCEEECCCCccceeCHH
Confidence 88888888888888887764
No 36
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.20 E-value=3.7e-06 Score=77.30 Aligned_cols=85 Identities=16% Similarity=0.274 Sum_probs=61.3
Q ss_pred ccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCC-CCC-CCCeeEEEecCCCCCCCCCC-C-CC
Q 037613 456 SIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQE-SPG-FAEVRFLHRHGYPLKSLPSN-I-NQ 531 (553)
Q Consensus 456 ~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~-~i~-L~~Lr~L~l~~~~l~~LP~~-i-~L 531 (553)
.++.+.+...... .++ ..|..+++|+.|+|+++ .+..+|. .++ |.+|++|+|+++.++.+|.. | ++
T Consensus 32 ~l~~L~L~~n~i~--~ip-~~~~~l~~L~~L~Ls~N-------~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l 101 (193)
T 2wfh_A 32 DVTELYLDGNQFT--LVP-KELSNYKHLTLIDLSNN-------RISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGL 101 (193)
T ss_dssp TCCEEECCSSCCC--SCC-GGGGGCTTCCEEECCSS-------CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred CCCEEECCCCcCc--hhH-HHhhcccCCCEEECCCC-------cCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCC
Confidence 4444444443222 233 67888888999999888 4555664 354 88888888888888888864 5 68
Q ss_pred CCccEEEcCCCCcccCCCC
Q 037613 532 KKLVVIEMPHSNIQQFWDG 550 (553)
Q Consensus 532 ~~L~~L~l~~s~i~~lp~~ 550 (553)
.+|++|+|+++.|..+|.+
T Consensus 102 ~~L~~L~L~~N~l~~~~~~ 120 (193)
T 2wfh_A 102 KSLRLLSLHGNDISVVPEG 120 (193)
T ss_dssp TTCCEEECCSSCCCBCCTT
T ss_pred CCCCEEECCCCCCCeeChh
Confidence 8888888888888888875
No 37
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.18 E-value=1.2e-06 Score=78.33 Aligned_cols=73 Identities=14% Similarity=0.068 Sum_probs=50.3
Q ss_pred ChhHhhcCCCCcEEEeecccCCCCCCCccccC--CCCC-CCCeeEEEecCCCCCCCCC----CC-CCCCccEEEcCCCCc
Q 037613 473 NPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQ--ESPG-FAEVRFLHRHGYPLKSLPS----NI-NQKKLVVIEMPHSNI 544 (553)
Q Consensus 473 ~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp--~~i~-L~~Lr~L~l~~~~l~~LP~----~i-~L~~L~~L~l~~s~i 544 (553)
.+..+..+++|++|+|++| .+..+| ..++ +.+|++|++++|++..+|. .+ .+.+|++|+++++.+
T Consensus 87 ~~~~~~~l~~L~~L~Ls~N-------~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 87 LDMLAEKLPNLTHLNLSGN-------KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CCHHHHHCTTCCEEECBSS-------SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred HHHHHhhCCCCCEEeccCC-------ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 4555666777777777776 344454 3444 7777777777777777776 45 577777777777777
Q ss_pred ccCCCCCC
Q 037613 545 QQFWDGTR 552 (553)
Q Consensus 545 ~~lp~~~~ 552 (553)
.++|.+.+
T Consensus 160 ~~~~~~~~ 167 (168)
T 2ell_A 160 QEAPDSDA 167 (168)
T ss_dssp CBCCSSSC
T ss_pred hhcccccc
Confidence 77777653
No 38
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.17 E-value=3.8e-06 Score=77.95 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=28.7
Q ss_pred ChhHhhcCCCCcEEEeecccCCCCCCCccccCCC-CC-CCCeeEEEecCCCCCCCCCC-C-CCCCccEEEcCCCC
Q 037613 473 NPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQES-PG-FAEVRFLHRHGYPLKSLPSN-I-NQKKLVVIEMPHSN 543 (553)
Q Consensus 473 ~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~-i~-L~~Lr~L~l~~~~l~~LP~~-i-~L~~L~~L~l~~s~ 543 (553)
++..|..+++|+.|+|+++ .+..+|.. ++ +.+|++|+++++.++.+|.. + ++.+|++|+|+++.
T Consensus 92 ~~~~~~~l~~L~~L~L~~N-------~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 92 PNGVFDKLTQLKELALNTN-------QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CTTTTTTCTTCCEEECCSS-------CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CHhHhcCccCCCEEEcCCC-------cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 3333444455555555444 22234332 22 44555555555554444443 2 34555555554443
No 39
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.17 E-value=3.2e-06 Score=83.07 Aligned_cols=76 Identities=13% Similarity=0.142 Sum_probs=61.5
Q ss_pred ccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCC-C-CCCeeEEEecCCCCCCCCCCC--CCCCccEEEcCCCCc
Q 037613 469 EIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESP-G-FAEVRFLHRHGYPLKSLPSNI--NQKKLVVIEMPHSNI 544 (553)
Q Consensus 469 ~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i-~-L~~Lr~L~l~~~~l~~LP~~i--~L~~L~~L~l~~s~i 544 (553)
-..+++..|..+.+|+.|+|+++ .+..+|..+ . +.+|++|++++++++.+|..+ ++.+|++|+|+++++
T Consensus 112 l~~l~~~~~~~l~~L~~L~L~~N-------~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 112 LTSLPLGALRGLGELQELYLKGN-------ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp CCCCCSSTTTTCTTCCEEECTTS-------CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CcccCHHHHcCCCCCCEEECCCC-------CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcC
Confidence 34556677888899999999888 455577654 4 889999999999999999875 599999999999999
Q ss_pred ccCCCCC
Q 037613 545 QQFWDGT 551 (553)
Q Consensus 545 ~~lp~~~ 551 (553)
+.+|.++
T Consensus 185 ~~ip~~~ 191 (290)
T 1p9a_G 185 YTIPKGF 191 (290)
T ss_dssp CCCCTTT
T ss_pred CccChhh
Confidence 9998865
No 40
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.16 E-value=3.7e-06 Score=80.64 Aligned_cols=72 Identities=15% Similarity=0.246 Sum_probs=51.0
Q ss_pred ccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCC-C-CCCeeEEEecCCCCCCCCCC-C-CCCCccEEEcCCCCccc
Q 037613 471 RLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESP-G-FAEVRFLHRHGYPLKSLPSN-I-NQKKLVVIEMPHSNIQQ 546 (553)
Q Consensus 471 ~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i-~-L~~Lr~L~l~~~~l~~LP~~-i-~L~~L~~L~l~~s~i~~ 546 (553)
.+++..|..+++|+.|+|+++ .+..+|... + +.+|++|+++++.++.+|.. + ++.+|++|+|+++++..
T Consensus 97 ~~~~~~~~~l~~L~~L~L~~N-------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 97 SLPLGVFDHLTQLDKLYLGGN-------QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSS-------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred ccChhHhcccCCCCEEEcCCC-------cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 445566777777777777776 444566553 4 77888888888877777763 5 57788888888877777
Q ss_pred CCC
Q 037613 547 FWD 549 (553)
Q Consensus 547 lp~ 549 (553)
+|.
T Consensus 170 ~~~ 172 (251)
T 3m19_A 170 VPH 172 (251)
T ss_dssp CCT
T ss_pred cCH
Confidence 765
No 41
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.16 E-value=4.1e-06 Score=83.25 Aligned_cols=51 Identities=24% Similarity=0.375 Sum_probs=42.5
Q ss_pred CCCCCCCccchhhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 158 FPHNNDRLVGVESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 158 ~~~~~~~~vGr~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
.|.....++|++..++.+..++.. .+.+.++|++|+||||+|+.+++.+..
T Consensus 16 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 16 RPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp CCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred CCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcC
Confidence 344456799999999999999876 344999999999999999999997643
No 42
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.16 E-value=1.5e-06 Score=96.56 Aligned_cols=88 Identities=16% Similarity=0.130 Sum_probs=72.2
Q ss_pred cccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCCCCCC-CCC
Q 037613 455 KSIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSLPSNI-NQK 532 (553)
Q Consensus 455 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~LP~~i-~L~ 532 (553)
..++.+.|.... ...++...| ++++|+.|+|++| .+..+|..++ |.+|++|+|++|.|+.||..| +|.
T Consensus 224 ~~L~~L~Ls~n~--l~~l~~~~~-~l~~L~~L~Ls~N-------~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 224 QLWHALDLSNLQ--IFNISANIF-KYDFLTRLYLNGN-------SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCF 293 (727)
T ss_dssp CCCCEEECTTSC--CSCCCGGGG-GCCSCSCCBCTTS-------CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGT
T ss_pred CCCcEEECCCCC--CCCCChhhc-CCCCCCEEEeeCC-------cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCC
Confidence 445554444433 334555555 8999999999998 5666998886 999999999999999999999 799
Q ss_pred CccEEEcCCCCcccCCCCCC
Q 037613 533 KLVVIEMPHSNIQQFWDGTR 552 (553)
Q Consensus 533 ~L~~L~l~~s~i~~lp~~~~ 552 (553)
+|++|+|++|.|..+|.++.
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~ 313 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFG 313 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTT
T ss_pred CCCEEECCCCCCCccChhhh
Confidence 99999999999999998764
No 43
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.15 E-value=3.8e-05 Score=76.42 Aligned_cols=49 Identities=29% Similarity=0.446 Sum_probs=41.4
Q ss_pred CCCCCCccchhhhHhhHHhhccc-------cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA-------APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~-------~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
|.....++|++..++.+...+.. ...+.|+|++|+|||++|+++++...
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 44557899999999998888753 46799999999999999999998764
No 44
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.15 E-value=1.7e-06 Score=94.26 Aligned_cols=73 Identities=15% Similarity=0.277 Sum_probs=41.6
Q ss_pred cccChhHhhcCCCCcEEEeecccCCCCCCCccccCCC-CC-CCCeeEEEecCCCCCCCCCC-C-CCCCccEEEcCCCCcc
Q 037613 470 IRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQES-PG-FAEVRFLHRHGYPLKSLPSN-I-NQKKLVVIEMPHSNIQ 545 (553)
Q Consensus 470 ~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~-i~-L~~Lr~L~l~~~~l~~LP~~-i-~L~~L~~L~l~~s~i~ 545 (553)
..+++..|.++++||+|+|++| .++.+|+. ++ |.+|++|+|++|+++.+|.. | +|.+|++|+|++++++
T Consensus 65 ~~l~~~~f~~l~~L~~L~Ls~N-------~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~ 137 (635)
T 4g8a_A 65 RHLGSYSFFSFPELQVLDLSRC-------EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 137 (635)
T ss_dssp CEECTTTTTTCTTCCEEECTTC-------CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC
T ss_pred CCCCHHHHhCCCCCCEEECCCC-------cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC
Confidence 3445555666666666666665 44445442 33 66666666666666666643 3 4666666666666665
Q ss_pred cCCC
Q 037613 546 QFWD 549 (553)
Q Consensus 546 ~lp~ 549 (553)
.+|.
T Consensus 138 ~l~~ 141 (635)
T 4g8a_A 138 SLEN 141 (635)
T ss_dssp CSTT
T ss_pred CCCh
Confidence 5554
No 45
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.15 E-value=7.2e-07 Score=78.16 Aligned_cols=84 Identities=18% Similarity=0.244 Sum_probs=58.6
Q ss_pred cccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccc-cCCCCC-CCCeeEEEecCCCCCCCC--CCC-
Q 037613 455 KSIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSY-LQESPG-FAEVRFLHRHGYPLKSLP--SNI- 529 (553)
Q Consensus 455 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~-lp~~i~-L~~Lr~L~l~~~~l~~LP--~~i- 529 (553)
..++.+.+........ ..|..+++|++|+|++|. +.. +|..++ +.+|++|++++|+++.+| ..+
T Consensus 42 ~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~n~-------i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~ 110 (149)
T 2je0_A 42 EELEFLSTINVGLTSI----ANLPKLNKLKKLELSDNR-------VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLK 110 (149)
T ss_dssp TTCCEEECTTSCCCCC----TTCCCCTTCCEEECCSSC-------CCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGG
T ss_pred CCCcEEECcCCCCCCc----hhhhcCCCCCEEECCCCc-------ccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHh
Confidence 4455555544432222 567778888888888874 333 555555 888888888888888876 667
Q ss_pred CCCCccEEEcCCCCcccCCC
Q 037613 530 NQKKLVVIEMPHSNIQQFWD 549 (553)
Q Consensus 530 ~L~~L~~L~l~~s~i~~lp~ 549 (553)
++.+|++|++++|.+..+|.
T Consensus 111 ~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 111 KLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp GCTTCCEEECTTCGGGGSTT
T ss_pred hCCCCCEEeCcCCcccchHH
Confidence 68888888888888887764
No 46
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.14 E-value=5.1e-06 Score=82.12 Aligned_cols=105 Identities=11% Similarity=0.096 Sum_probs=69.7
Q ss_pred CccchhhhHhhHHhhccc------cCEEEEeecCCCchHHHHHHHHhhhcCCC-----Cc--eEEEEechhhhcccCCHH
Q 037613 164 RLVGVESRVVAIESLLSA------APLLAIWGIGGIGKTTIARATFDKISSDF-----EG--SCFLENVREESQRLGGLA 230 (553)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F-----~~--~~~~~~~~~~s~~~~~~~ 230 (553)
.+.||++++++|...|.. .+.+.|+|++|+|||++++++++++.... +. .+.+. .... .+..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN----c~~~-~t~~ 95 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID----ALEL-AGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE----TTCC-C--H
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe----cccc-CCHH
Confidence 388999999999988765 77899999999999999999999765322 11 22332 1111 4556
Q ss_pred HHHHHHHHhhccCCCCc-ccHHHHHH---Hh---cCCCeEEEEcCCCChH
Q 037613 231 CLRQKLLSNLFRDESMI-PDIDLHFK---RL---SRRKVLVVFDDVTCFN 273 (553)
Q Consensus 231 ~l~~~ll~~l~~~~~~~-~~~~~l~~---~L---~~kr~LlVLDdv~~~~ 273 (553)
.+...++.++.+..... .....+.+ .+ .+++++++||+++...
T Consensus 96 ~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 96 ALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp HHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh
Confidence 77778888886552111 22333333 22 4567999999997653
No 47
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.14 E-value=1.5e-06 Score=78.58 Aligned_cols=68 Identities=15% Similarity=0.193 Sum_probs=53.1
Q ss_pred hHhhcCCCCcEEEeecccCCCCCCCccccCCCC-C-CCCeeEEEecCCCCCCCCC--CC-CCCCccEEEcCCCCcccCCC
Q 037613 475 NTFVKMHKLRFLKFYNSINGDNRCKVSYLQESP-G-FAEVRFLHRHGYPLKSLPS--NI-NQKKLVVIEMPHSNIQQFWD 549 (553)
Q Consensus 475 ~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i-~-L~~Lr~L~l~~~~l~~LP~--~i-~L~~L~~L~l~~s~i~~lp~ 549 (553)
..|..+++|+.|+|++| .+..+|..+ + +.+|++|++++|.++.+|. .+ ++.+|++|+|+++.+..+|.
T Consensus 58 ~~l~~l~~L~~L~Ls~N-------~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~ 130 (176)
T 1a9n_A 58 DGFPLLRRLKTLLVNNN-------RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 130 (176)
T ss_dssp CCCCCCSSCCEEECCSS-------CCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred cccccCCCCCEEECCCC-------cccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHh
Confidence 45777888888888887 555677655 4 8888888888888888887 66 68888888888888877765
No 48
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.13 E-value=4.1e-06 Score=75.31 Aligned_cols=63 Identities=14% Similarity=0.306 Sum_probs=55.5
Q ss_pred CCCcEEEeecccCCCCCCCcccc-CCCCC-CCCeeEEEecCCCCCCCCCCC--CCCCccEEEcCCCCcccCCCC
Q 037613 481 HKLRFLKFYNSINGDNRCKVSYL-QESPG-FAEVRFLHRHGYPLKSLPSNI--NQKKLVVIEMPHSNIQQFWDG 550 (553)
Q Consensus 481 ~~LrvL~l~~~~~~~~~~~l~~l-p~~i~-L~~Lr~L~l~~~~l~~LP~~i--~L~~L~~L~l~~s~i~~lp~~ 550 (553)
++|+.|+|+++ .+..+ |..++ |.+|++|+|+++.++.+|... ++.+|++|+|++++|+.+|.+
T Consensus 30 ~~l~~L~L~~N-------~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~ 96 (170)
T 3g39_A 30 TTTQVLYLYDN-------QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRG 96 (170)
T ss_dssp TTCSEEECCSS-------CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCcEEEcCCC-------cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHH
Confidence 78999999999 45557 45565 999999999999999999875 699999999999999999875
No 49
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.13 E-value=1.4e-06 Score=77.93 Aligned_cols=84 Identities=15% Similarity=0.202 Sum_probs=56.4
Q ss_pred cccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccc-cCCCCC-CCCeeEEEecCCCCCCCC--CCC-
Q 037613 455 KSIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSY-LQESPG-FAEVRFLHRHGYPLKSLP--SNI- 529 (553)
Q Consensus 455 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~-lp~~i~-L~~Lr~L~l~~~~l~~LP--~~i- 529 (553)
..++.+.+........ ..|..+++|+.|+|++|. +.. +|..++ +.+|++|++++|.++.+| ..+
T Consensus 49 ~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~ 117 (168)
T 2ell_A 49 VNLEFLSLINVGLISV----SNLPKLPKLKKLELSENR-------IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLK 117 (168)
T ss_dssp GGCCEEEEESSCCCCC----SSCCCCSSCCEEEEESCC-------CCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGS
T ss_pred CCCCEEeCcCCCCCCh----hhhccCCCCCEEECcCCc-------CchHHHHHHhhCCCCCEEeccCCccCcchhHHHHh
Confidence 4444444444332221 556777888888888774 333 555555 788888888888888877 566
Q ss_pred CCCCccEEEcCCCCcccCCC
Q 037613 530 NQKKLVVIEMPHSNIQQFWD 549 (553)
Q Consensus 530 ~L~~L~~L~l~~s~i~~lp~ 549 (553)
++.+|++|+|+++.+..+|.
T Consensus 118 ~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 118 KLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp SCSCCCEEECCSSGGGTSTT
T ss_pred cCCCCCEEEeeCCcCcchHH
Confidence 68888888888888877764
No 50
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.13 E-value=1.8e-06 Score=93.07 Aligned_cols=85 Identities=12% Similarity=0.140 Sum_probs=65.9
Q ss_pred ccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCC--CCCC-CC
Q 037613 456 SIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSL--PSNI-NQ 531 (553)
Q Consensus 456 ~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~L--P~~i-~L 531 (553)
.++.+.+..... ..+ +..|..+++|+.|+|++| .+..+| .++ |.+|++|+|++|.++.+ |..+ +|
T Consensus 464 ~L~~L~Ls~N~l--~~l-p~~~~~l~~L~~L~Ls~N-------~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l 532 (567)
T 1dce_A 464 LVTHLDLSHNRL--RAL-PPALAALRCLEVLQASDN-------ALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSC 532 (567)
T ss_dssp TCCEEECCSSCC--CCC-CGGGGGCTTCCEEECCSS-------CCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGC
T ss_pred cCcEeecCcccc--ccc-chhhhcCCCCCEEECCCC-------CCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcC
Confidence 444444444432 233 457889999999999988 555588 665 99999999999999998 8888 79
Q ss_pred CCccEEEcCCCCcccCCCCC
Q 037613 532 KKLVVIEMPHSNIQQFWDGT 551 (553)
Q Consensus 532 ~~L~~L~l~~s~i~~lp~~~ 551 (553)
.+|++|+|+++.+..+|...
T Consensus 533 ~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 533 PRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp TTCCEEECTTSGGGGSSSCT
T ss_pred CCCCEEEecCCcCCCCccHH
Confidence 99999999999999888654
No 51
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.13 E-value=3.7e-06 Score=77.18 Aligned_cols=65 Identities=11% Similarity=0.161 Sum_probs=47.4
Q ss_pred HhhcCCCCcEEEeecccCCCCCCCcccc-CCCCC-CCCeeEEEecCCCCCCCCCC-C-CCCCccEEEcCCCCcccC
Q 037613 476 TFVKMHKLRFLKFYNSINGDNRCKVSYL-QESPG-FAEVRFLHRHGYPLKSLPSN-I-NQKKLVVIEMPHSNIQQF 547 (553)
Q Consensus 476 ~~~~~~~LrvL~l~~~~~~~~~~~l~~l-p~~i~-L~~Lr~L~l~~~~l~~LP~~-i-~L~~L~~L~l~~s~i~~l 547 (553)
.|..+++|+.|+|+++. +..+ |..++ +.+|++|+++++.++.+|.. | ++.+|++|+|+++++..+
T Consensus 49 ~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 117 (192)
T 1w8a_A 49 LFGRLPHLVKLELKRNQ-------LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117 (192)
T ss_dssp SGGGCTTCCEEECCSSC-------CCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred ccccCCCCCEEECCCCC-------CCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCee
Confidence 47778888888888773 3335 45554 77888888888888777765 5 588888888888877766
No 52
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.12 E-value=5.1e-06 Score=79.66 Aligned_cols=73 Identities=25% Similarity=0.327 Sum_probs=55.9
Q ss_pred ccChhHhhcCCCCcEEEeecccCCCCCCCccccCCC-CC-CCCeeEEEecCCCCCCCCCCC--CCCCccEEEcCCCCccc
Q 037613 471 RLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQES-PG-FAEVRFLHRHGYPLKSLPSNI--NQKKLVVIEMPHSNIQQ 546 (553)
Q Consensus 471 ~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~-i~-L~~Lr~L~l~~~~l~~LP~~i--~L~~L~~L~l~~s~i~~ 546 (553)
.+++..|..+++|++|+|+++ .+..+|.. ++ +.+|++|+++++.++.+|... .+.+|++|+|++++|..
T Consensus 73 ~~~~~~~~~l~~L~~L~L~~n-------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 145 (251)
T 3m19_A 73 TLSAGVFDDLTELGTLGLANN-------QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145 (251)
T ss_dssp CCCTTTTTTCTTCCEEECTTS-------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ccCHhHhccCCcCCEEECCCC-------cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc
Confidence 455666778888888888877 44456644 34 888888888888888888764 58888888888888888
Q ss_pred CCCC
Q 037613 547 FWDG 550 (553)
Q Consensus 547 lp~~ 550 (553)
+|.+
T Consensus 146 ~~~~ 149 (251)
T 3m19_A 146 IPAG 149 (251)
T ss_dssp CCTT
T ss_pred cCHH
Confidence 8763
No 53
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.08 E-value=5.2e-06 Score=81.58 Aligned_cols=67 Identities=15% Similarity=0.141 Sum_probs=51.0
Q ss_pred hcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCCCCC-C-CCCCccEEEcCCCCcccCCCCC
Q 037613 478 VKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSLPSN-I-NQKKLVVIEMPHSNIQQFWDGT 551 (553)
Q Consensus 478 ~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~LP~~-i-~L~~L~~L~l~~s~i~~lp~~~ 551 (553)
..+++|+.|+|+++ .+..+|..+. +.+|++|+++++.++.+|.. | ++.+|++|+|+++++..+|.+.
T Consensus 74 ~~l~~L~~L~Ls~N-------~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 143 (290)
T 1p9a_G 74 GTLPVLGTLDLSHN-------QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143 (290)
T ss_dssp SCCTTCCEEECCSS-------CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred CCCCcCCEEECCCC-------cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhh
Confidence 45566666666665 5566887775 88888888888888888854 5 6888999999888888888753
No 54
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.08 E-value=5.5e-06 Score=77.81 Aligned_cols=70 Identities=17% Similarity=0.236 Sum_probs=60.6
Q ss_pred ChhHhhcCCCCcEEEeecccCCCCCCCccccCC-CCC-CCCeeEEEecCCCCCCCCCC-C-CCCCccEEEcCCCCcccCC
Q 037613 473 NPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQE-SPG-FAEVRFLHRHGYPLKSLPSN-I-NQKKLVVIEMPHSNIQQFW 548 (553)
Q Consensus 473 ~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~-~i~-L~~Lr~L~l~~~~l~~LP~~-i-~L~~L~~L~l~~s~i~~lp 548 (553)
+..+|..+++|+.|+|+++ .+..+|. .++ +.+|++|+++++.++.+|.. | ++.+|++|+|++++|..++
T Consensus 49 ~~~~~~~l~~L~~L~L~~N-------~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 121 (220)
T 2v70_A 49 ATGIFKKLPQLRKINFSNN-------KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVG 121 (220)
T ss_dssp CCCCGGGCTTCCEEECCSS-------CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBC
T ss_pred chhhhccCCCCCEEECCCC-------cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeEC
Confidence 3456899999999999998 5666775 565 99999999999999999986 5 6999999999999999885
Q ss_pred C
Q 037613 549 D 549 (553)
Q Consensus 549 ~ 549 (553)
.
T Consensus 122 ~ 122 (220)
T 2v70_A 122 N 122 (220)
T ss_dssp T
T ss_pred H
Confidence 3
No 55
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.07 E-value=2.1e-06 Score=75.10 Aligned_cols=85 Identities=16% Similarity=0.224 Sum_probs=65.1
Q ss_pred cccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCC-CCCCC-CC
Q 037613 455 KSIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKS-LPSNI-NQ 531 (553)
Q Consensus 455 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~-LP~~i-~L 531 (553)
..++.+.+.........+ +..|..+++|+.|++++|. +..+ ..++ +.+|++|++++|.++. +|..+ ++
T Consensus 17 ~~l~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~-------l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 87 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKL-EGLTDEFEELEFLSTINVG-------LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKC 87 (149)
T ss_dssp GGCSEEECTTCBCBTTBC-CSCCTTCTTCCEEECTTSC-------CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHC
T ss_pred ccCeEEEccCCcCChhHH-HHHHhhcCCCcEEECcCCC-------CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhC
Confidence 556666665553321123 3467899999999999984 4445 4554 9999999999999998 77777 59
Q ss_pred CCccEEEcCCCCcccCC
Q 037613 532 KKLVVIEMPHSNIQQFW 548 (553)
Q Consensus 532 ~~L~~L~l~~s~i~~lp 548 (553)
.+|++|+|+++.+..+|
T Consensus 88 ~~L~~L~ls~N~i~~~~ 104 (149)
T 2je0_A 88 PNLTHLNLSGNKIKDLS 104 (149)
T ss_dssp TTCCEEECTTSCCCSHH
T ss_pred CCCCEEECCCCcCCChH
Confidence 99999999999998875
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.05 E-value=3.8e-06 Score=84.09 Aligned_cols=70 Identities=19% Similarity=0.273 Sum_probs=47.1
Q ss_pred hHhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCC-CCCCCCCC-C---------CCCccEEEcCCC
Q 037613 475 NTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYP-LKSLPSNI-N---------QKKLVVIEMPHS 542 (553)
Q Consensus 475 ~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~-l~~LP~~i-~---------L~~L~~L~l~~s 542 (553)
..|.++++|++|+|++| .+..+|..++ |.+|++|++++|+ +..+|..+ . +.+|++|+|+++
T Consensus 121 ~~~~~l~~L~~L~Ls~n-------~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n 193 (328)
T 4fcg_A 121 DTMQQFAGLETLTLARN-------PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT 193 (328)
T ss_dssp SCGGGGTTCSEEEEESC-------CCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE
T ss_pred HHHhccCCCCEEECCCC-------ccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC
Confidence 45667777777777766 4445676664 7777777777754 66677666 3 777777777777
Q ss_pred CcccCCCCC
Q 037613 543 NIQQFWDGT 551 (553)
Q Consensus 543 ~i~~lp~~~ 551 (553)
++..+|.++
T Consensus 194 ~l~~lp~~l 202 (328)
T 4fcg_A 194 GIRSLPASI 202 (328)
T ss_dssp CCCCCCGGG
T ss_pred CcCcchHhh
Confidence 777777643
No 57
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.03 E-value=1.5e-05 Score=79.31 Aligned_cols=52 Identities=31% Similarity=0.377 Sum_probs=43.2
Q ss_pred CCCCCCCCccchhhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 157 LFPHNNDRLVGVESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 157 ~~~~~~~~~vGr~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
..|.....++|++..++.+..++.. .+.+.++|++|+||||+|+.+++.+..
T Consensus 19 ~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~ 72 (327)
T 1iqp_A 19 YRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFG 72 (327)
T ss_dssp TCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcC
Confidence 3445557799999999999998876 446999999999999999999987643
No 58
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.03 E-value=9.7e-06 Score=78.59 Aligned_cols=73 Identities=18% Similarity=0.351 Sum_probs=51.6
Q ss_pred ccChhHhhcCCCCcEEEeecccCCCCCCCccccCCC-CC-CCCeeEEEecCCCCCCCCCC-C-CCCCccEEEcCCCCccc
Q 037613 471 RLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQES-PG-FAEVRFLHRHGYPLKSLPSN-I-NQKKLVVIEMPHSNIQQ 546 (553)
Q Consensus 471 ~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~-i~-L~~Lr~L~l~~~~l~~LP~~-i-~L~~L~~L~l~~s~i~~ 546 (553)
.+++..|..+++|+.|+|+++ .+..+|.. ++ +.+|++|+++++.++.+|.. + ++.+|++|+|+++++..
T Consensus 123 ~~~~~~~~~l~~L~~L~Ls~n-------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 123 SLPPRVFDSLTKLTYLSLGYN-------ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSS-------CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred eeCHHHhCcCcCCCEEECCCC-------cCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence 345556677777777777776 44456654 34 77888888888888877765 4 57888888888888777
Q ss_pred CCCC
Q 037613 547 FWDG 550 (553)
Q Consensus 547 lp~~ 550 (553)
+|.+
T Consensus 196 ~~~~ 199 (270)
T 2o6q_A 196 VPEG 199 (270)
T ss_dssp CCTT
T ss_pred CCHH
Confidence 7764
No 59
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.03 E-value=5.8e-06 Score=74.64 Aligned_cols=85 Identities=9% Similarity=0.112 Sum_probs=63.9
Q ss_pred CcccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCC-CCCCeeEEEecCCCCCCCCCCC--C
Q 037613 454 TKSIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESP-GFAEVRFLHRHGYPLKSLPSNI--N 530 (553)
Q Consensus 454 ~~~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i-~L~~Lr~L~l~~~~l~~LP~~i--~ 530 (553)
...++.+.+....... + +......++|+.|+|++| .+..+ +.+ ++.+|++|++++|.++.+|..+ +
T Consensus 18 ~~~L~~L~l~~n~l~~--i-~~~~~~~~~L~~L~Ls~N-------~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 86 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV--I-ENLGATLDQFDAIDFSDN-------EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQA 86 (176)
T ss_dssp TTSCEEEECTTSCCCS--C-CCGGGGTTCCSEEECCSS-------CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred cCCceEEEeeCCCCch--h-HHhhhcCCCCCEEECCCC-------CCCcc-cccccCCCCCEEECCCCcccccCcchhhc
Confidence 4556666665553322 2 233333449999999998 45556 445 4999999999999999999876 5
Q ss_pred CCCccEEEcCCCCcccCCC
Q 037613 531 QKKLVVIEMPHSNIQQFWD 549 (553)
Q Consensus 531 L~~L~~L~l~~s~i~~lp~ 549 (553)
+.+|++|+|++++|..+|.
T Consensus 87 l~~L~~L~L~~N~i~~~~~ 105 (176)
T 1a9n_A 87 LPDLTELILTNNSLVELGD 105 (176)
T ss_dssp CTTCCEEECCSCCCCCGGG
T ss_pred CCCCCEEECCCCcCCcchh
Confidence 9999999999999998886
No 60
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.01 E-value=5.7e-06 Score=83.96 Aligned_cols=40 Identities=13% Similarity=0.332 Sum_probs=20.0
Q ss_pred CCCeeEEEecCCCCCCCCCCC-----CCCCccEEEcCCCCcccCC
Q 037613 509 FAEVRFLHRHGYPLKSLPSNI-----NQKKLVVIEMPHSNIQQFW 548 (553)
Q Consensus 509 L~~Lr~L~l~~~~l~~LP~~i-----~L~~L~~L~l~~s~i~~lp 548 (553)
|.+|++|+|++|.++.+|..+ ++.+|++|+|++++|..+|
T Consensus 135 l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 135 MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 455555555555555555432 2455555555555555444
No 61
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.01 E-value=9.7e-06 Score=78.58 Aligned_cols=73 Identities=22% Similarity=0.288 Sum_probs=54.8
Q ss_pred ccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCC-C-CCCeeEEEecCCCCCCCCCC-C-CCCCccEEEcCCCCccc
Q 037613 471 RLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESP-G-FAEVRFLHRHGYPLKSLPSN-I-NQKKLVVIEMPHSNIQQ 546 (553)
Q Consensus 471 ~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i-~-L~~Lr~L~l~~~~l~~LP~~-i-~L~~L~~L~l~~s~i~~ 546 (553)
.++...|..+++|+.|+|+++ .+..+|... + +.+|++|+++++.++.+|.. + ++.+|++|+|+++.+..
T Consensus 75 ~i~~~~~~~l~~L~~L~l~~n-------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 147 (270)
T 2o6q_A 75 TLPAGIFKELKNLETLWVTDN-------KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS 147 (270)
T ss_dssp CCCTTTTSSCTTCCEEECCSS-------CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred eeChhhhcCCCCCCEEECCCC-------cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc
Confidence 455666777788888888777 455566544 4 88888888888888888765 4 58888888888888888
Q ss_pred CCCC
Q 037613 547 FWDG 550 (553)
Q Consensus 547 lp~~ 550 (553)
+|.+
T Consensus 148 ~~~~ 151 (270)
T 2o6q_A 148 LPKG 151 (270)
T ss_dssp CCTT
T ss_pred cCHh
Confidence 8765
No 62
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.01 E-value=7.1e-06 Score=88.41 Aligned_cols=67 Identities=12% Similarity=0.184 Sum_probs=61.3
Q ss_pred hhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCcccC--CCCC
Q 037613 477 FVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSLPSNI-NQKKLVVIEMPHSNIQQF--WDGT 551 (553)
Q Consensus 477 ~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~~s~i~~l--p~~~ 551 (553)
|..+++|+.|+|++| .+..+|..++ |.+|++|+|++|.++.+| .+ +|.+|++|+|++++|..+ |..+
T Consensus 459 ~~~l~~L~~L~Ls~N-------~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l 529 (567)
T 1dce_A 459 LEQLLLVTHLDLSHN-------RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPL 529 (567)
T ss_dssp GGGGTTCCEEECCSS-------CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGG
T ss_pred ccccccCcEeecCcc-------cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHH
Confidence 899999999999998 5667999896 999999999999999999 77 799999999999999998 6654
No 63
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=97.99 E-value=5e-06 Score=83.25 Aligned_cols=87 Identities=14% Similarity=0.222 Sum_probs=69.1
Q ss_pred cccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCCCCCC-CCC
Q 037613 455 KSIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSLPSNI-NQK 532 (553)
Q Consensus 455 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~LP~~i-~L~ 532 (553)
..++.+.+...... .++. .+.++++|++|+|+++ .+..+|..++ |.+|++|++++|.++.+|..+ ++.
T Consensus 81 ~~l~~L~L~~n~l~--~lp~-~l~~l~~L~~L~L~~n-------~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~ 150 (328)
T 4fcg_A 81 PGRVALELRSVPLP--QFPD-QAFRLSHLQHMTIDAA-------GLMELPDTMQQFAGLETLTLARNPLRALPASIASLN 150 (328)
T ss_dssp TTCCEEEEESSCCS--SCCS-CGGGGTTCSEEEEESS-------CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCT
T ss_pred cceeEEEccCCCch--hcCh-hhhhCCCCCEEECCCC-------CccchhHHHhccCCCCEEECCCCccccCcHHHhcCc
Confidence 45566665554332 3444 4666999999999998 5666998886 999999999999999999999 799
Q ss_pred CccEEEcCCC-CcccCCCCC
Q 037613 533 KLVVIEMPHS-NIQQFWDGT 551 (553)
Q Consensus 533 ~L~~L~l~~s-~i~~lp~~~ 551 (553)
+|++|+|++| .+..+|..+
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~ 170 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPL 170 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCS
T ss_pred CCCEEECCCCCCccccChhH
Confidence 9999999985 577788754
No 64
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.98 E-value=1.3e-05 Score=77.81 Aligned_cols=73 Identities=19% Similarity=0.328 Sum_probs=47.5
Q ss_pred ccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCC-C-CCCeeEEEecCCCCCCCCCCC--CCCCccEEEcCCCCccc
Q 037613 471 RLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESP-G-FAEVRFLHRHGYPLKSLPSNI--NQKKLVVIEMPHSNIQQ 546 (553)
Q Consensus 471 ~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i-~-L~~Lr~L~l~~~~l~~LP~~i--~L~~L~~L~l~~s~i~~ 546 (553)
.+++..|..+++|+.|+|++| .+..+|... + +.+|++|++++|.++.+|... ++.+|++|+|+++++..
T Consensus 123 ~~~~~~~~~l~~L~~L~L~~n-------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 123 SLPDGVFDKLTNLTYLNLAHN-------QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSS-------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred ccCHHHhccCCCCCEEECCCC-------ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 445555666677777777666 344455443 3 777777777777777777654 47777777777777777
Q ss_pred CCCC
Q 037613 547 FWDG 550 (553)
Q Consensus 547 lp~~ 550 (553)
+|.+
T Consensus 196 ~~~~ 199 (272)
T 3rfs_A 196 VPDG 199 (272)
T ss_dssp CCTT
T ss_pred cCHH
Confidence 6653
No 65
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.97 E-value=7.8e-06 Score=82.32 Aligned_cols=68 Identities=15% Similarity=0.133 Sum_probs=35.6
Q ss_pred ccChhHhhcCCCCcEEEeecccCCCCCCCccccCCC-CC-CCCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCcc
Q 037613 471 RLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQES-PG-FAEVRFLHRHGYPLKSLPSNI-NQKKLVVIEMPHSNIQ 545 (553)
Q Consensus 471 ~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~-i~-L~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~~s~i~ 545 (553)
.+++..|..+.+|+.|+|+++ .+..+|.. ++ |.+|++|+|+++.|..+|..+ ...+|++|+|.++.+.
T Consensus 46 ~~~~~~~~~l~~L~~L~l~~N-------~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 46 HLELRDLRGLGELRNLTIVKS-------GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp EECGGGSCSCCCCSEEECCSS-------CCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CcChhHhccccCCCEEECCCC-------ccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCcc
Confidence 344455555666666666555 33334432 23 556666666666666665544 3333666666555543
No 66
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.96 E-value=8.9e-06 Score=83.30 Aligned_cols=72 Identities=24% Similarity=0.331 Sum_probs=45.0
Q ss_pred ccChhHhhcCCCCcEEEeecccCCCCCCCccccCC-CCC-CCCeeEEEecCCCCCCCCCCC--CCCCccEEEcCCCCccc
Q 037613 471 RLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQE-SPG-FAEVRFLHRHGYPLKSLPSNI--NQKKLVVIEMPHSNIQQ 546 (553)
Q Consensus 471 ~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~-~i~-L~~Lr~L~l~~~~l~~LP~~i--~L~~L~~L~l~~s~i~~ 546 (553)
.+++..|..+++|+.|+|+++ .+..+|. .++ +.+|++|++++|.++.+|..+ ++.+|++|+|+++.+..
T Consensus 83 ~~~~~~~~~l~~L~~L~L~~n-------~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~ 155 (390)
T 3o6n_A 83 EIDTYAFAYAHTIQKLYMGFN-------AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 155 (390)
T ss_dssp EECTTTTTTCTTCCEEECCSS-------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred ccChhhccCCCCcCEEECCCC-------CCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc
Confidence 344455666666666666665 3333543 344 677777777777777777664 47777777777777766
Q ss_pred CCC
Q 037613 547 FWD 549 (553)
Q Consensus 547 lp~ 549 (553)
++.
T Consensus 156 ~~~ 158 (390)
T 3o6n_A 156 IED 158 (390)
T ss_dssp CCT
T ss_pred cCh
Confidence 643
No 67
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.96 E-value=1.2e-05 Score=80.22 Aligned_cols=74 Identities=18% Similarity=0.284 Sum_probs=56.8
Q ss_pred cccChhHhhcCCCCcEEEeecccCCCCCCCccccCC-CCC-CCCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCccc
Q 037613 470 IRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQE-SPG-FAEVRFLHRHGYPLKSLPSNI-NQKKLVVIEMPHSNIQQ 546 (553)
Q Consensus 470 ~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~-~i~-L~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~~s~i~~ 546 (553)
..+.+..|..+++|+.|+|+++ .+..++. .++ +.+|++|++++|++..+|..+ .+.+|++|+|++++|..
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~n-------~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSFN-------SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCSS-------CCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCC
T ss_pred CccCHHHhcCCCCCCEEECCCC-------cCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCc
Confidence 3445667888888888888887 4444554 454 788888888888888888888 68888888888888888
Q ss_pred CCCC
Q 037613 547 FWDG 550 (553)
Q Consensus 547 lp~~ 550 (553)
+|..
T Consensus 278 ~~~~ 281 (330)
T 1xku_A 278 IGSN 281 (330)
T ss_dssp CCTT
T ss_pred cChh
Confidence 7753
No 68
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.95 E-value=1e-05 Score=87.99 Aligned_cols=67 Identities=18% Similarity=0.185 Sum_probs=33.6
Q ss_pred cChhHhhcCCCCcEEEeecccCCCCCCCcccc-CCCCC-CCCeeEEEecCCCCCCCC-CCC-CCCCccEEEcCCCCcc
Q 037613 472 LNPNTFVKMHKLRFLKFYNSINGDNRCKVSYL-QESPG-FAEVRFLHRHGYPLKSLP-SNI-NQKKLVVIEMPHSNIQ 545 (553)
Q Consensus 472 ~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~l-p~~i~-L~~Lr~L~l~~~~l~~LP-~~i-~L~~L~~L~l~~s~i~ 545 (553)
+.+..|.++++||+|+|+++. +..+ |..++ |.+|++|++++|.+..+| ..+ ++.+|++|+|+++.+.
T Consensus 71 i~~~~~~~l~~L~~L~Ls~n~-------l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 141 (606)
T 3vq2_A 71 IEDKAWHGLHHLSNLILTGNP-------IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141 (606)
T ss_dssp ECTTTTTTCTTCCEEECTTCC-------CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCC
T ss_pred cCHHHhhchhhcCEeECCCCc-------ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCccc
Confidence 344455555555555555552 2223 34443 555555555555555554 333 4555555555555544
No 69
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.95 E-value=1.1e-05 Score=87.71 Aligned_cols=86 Identities=15% Similarity=0.259 Sum_probs=69.3
Q ss_pred cccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccC-CCCC-CCCeeEEEecCCCCCCC-CCCC-C
Q 037613 455 KSIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQ-ESPG-FAEVRFLHRHGYPLKSL-PSNI-N 530 (553)
Q Consensus 455 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp-~~i~-L~~Lr~L~l~~~~l~~L-P~~i-~ 530 (553)
..++.+.+... .-..+++..|.++++||+|+|+++ .+..++ ..++ |.+||+|++++|.++.+ |..| +
T Consensus 32 ~~l~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n-------~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 102 (606)
T 3vq2_A 32 SSTKNIDLSFN--PLKILKSYSFSNFSELQWLDLSRC-------EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG 102 (606)
T ss_dssp TTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTC-------CCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred CCcCEEECCCC--CcCEeChhhccCCccCcEEeCCCC-------cccccCHHHhhchhhcCEeECCCCcccccChhhcCC
Confidence 44555544443 344567778999999999999998 455574 5565 99999999999999998 7788 7
Q ss_pred CCCccEEEcCCCCcccCCC
Q 037613 531 QKKLVVIEMPHSNIQQFWD 549 (553)
Q Consensus 531 L~~L~~L~l~~s~i~~lp~ 549 (553)
+.+|++|+|++|.+..+|.
T Consensus 103 l~~L~~L~L~~n~l~~~~~ 121 (606)
T 3vq2_A 103 LTSLENLVAVETKLASLES 121 (606)
T ss_dssp CTTCCEEECTTSCCCCSSS
T ss_pred cccCCEEEccCCccccccc
Confidence 9999999999999999883
No 70
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.94 E-value=1.8e-05 Score=76.76 Aligned_cols=69 Identities=17% Similarity=0.325 Sum_probs=31.0
Q ss_pred ChhHhhcCCCCcEEEeecccCCCCCCCccccCCC-CC-CCCeeEEEecCCCCCCCCCCC--CCCCccEEEcCCCCcccCC
Q 037613 473 NPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQES-PG-FAEVRFLHRHGYPLKSLPSNI--NQKKLVVIEMPHSNIQQFW 548 (553)
Q Consensus 473 ~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~-i~-L~~Lr~L~l~~~~l~~LP~~i--~L~~L~~L~l~~s~i~~lp 548 (553)
++..|..+++|+.|+|++| .+..+|.. ++ +.+|++|++++|.++.+|... ++.+|++|+|++|++..+|
T Consensus 101 ~~~~~~~l~~L~~L~L~~n-------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 101 PNGVFDKLTNLKELVLVEN-------QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp CTTTTTTCTTCCEEECTTS-------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred ChhHhcCCcCCCEEECCCC-------cCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 3334444445555555444 22223332 22 445555555555444444432 3445555555554444444
No 71
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.93 E-value=1e-05 Score=87.21 Aligned_cols=84 Identities=11% Similarity=0.160 Sum_probs=60.0
Q ss_pred cccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCcccc-CCCCC-CCCeeEEEecCCCCCCCCCCCCCC
Q 037613 455 KSIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYL-QESPG-FAEVRFLHRHGYPLKSLPSNINQK 532 (553)
Q Consensus 455 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~l-p~~i~-L~~Lr~L~l~~~~l~~LP~~i~L~ 532 (553)
..++.+.+... .-..+++..|.++++|++|+|+++ .+..+ |..++ |.+|++|++++|.++.+|.. .+.
T Consensus 52 ~~L~~L~Ls~N--~i~~~~~~~~~~l~~L~~L~Ls~N-------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~ 121 (562)
T 3a79_B 52 PRTKALSLSQN--SISELRMPDISFLSELRVLRLSHN-------RIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMA 121 (562)
T ss_dssp TTCCEEECCSS--CCCCCCGGGTTTCTTCCEEECCSC-------CCCEECTTTTTTCTTCCEEECTTSCCCEECSC-CCT
T ss_pred CCcCEEECCCC--CccccChhhhccCCCccEEECCCC-------CCCcCCHHHhCCCCCCCEEECCCCcCCccCcc-ccc
Confidence 34444444433 334456677888888888888887 44446 45564 88888888888888888877 888
Q ss_pred CccEEEcCCCCcccCC
Q 037613 533 KLVVIEMPHSNIQQFW 548 (553)
Q Consensus 533 ~L~~L~l~~s~i~~lp 548 (553)
+|++|+|+++++..+|
T Consensus 122 ~L~~L~Ls~N~l~~l~ 137 (562)
T 3a79_B 122 SLRHLDLSFNDFDVLP 137 (562)
T ss_dssp TCSEEECCSSCCSBCC
T ss_pred cCCEEECCCCCccccC
Confidence 8888888888887765
No 72
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.92 E-value=2e-05 Score=71.02 Aligned_cols=83 Identities=20% Similarity=0.245 Sum_probs=65.7
Q ss_pred cccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCC-C-CCCeeEEEecCCCCCCCCCCC--C
Q 037613 455 KSIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESP-G-FAEVRFLHRHGYPLKSLPSNI--N 530 (553)
Q Consensus 455 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i-~-L~~Lr~L~l~~~~l~~LP~~i--~ 530 (553)
..++.+.+... .-..+++..|..+++|+.|+|+++ .+..+|... + +.+|++|+++++.++.+|..+ .
T Consensus 52 ~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~N-------~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 122 (177)
T 2o6r_A 52 TQLTKLSLSQN--QIQSLPDGVFDKLTKLTILYLHEN-------KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDR 122 (177)
T ss_dssp TTCSEEECCSS--CCCCCCTTTTTTCTTCCEEECCSS-------CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred ccccEEECCCC--cceEeChhHccCCCccCEEECCCC-------CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcC
Confidence 44555544433 334567777899999999999998 555577654 5 999999999999999999875 5
Q ss_pred CCCccEEEcCCCCccc
Q 037613 531 QKKLVVIEMPHSNIQQ 546 (553)
Q Consensus 531 L~~L~~L~l~~s~i~~ 546 (553)
+.+|++|+|+++.+.-
T Consensus 123 l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 123 LTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CTTCCEEECCSSCBCC
T ss_pred CcccCEEEecCCCeec
Confidence 9999999999998754
No 73
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.91 E-value=1.4e-05 Score=73.33 Aligned_cols=81 Identities=11% Similarity=0.240 Sum_probs=63.1
Q ss_pred ccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCC-CC-CCCeeEEEecCCCCCCC-CCCC-CC
Q 037613 456 SIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQES-PG-FAEVRFLHRHGYPLKSL-PSNI-NQ 531 (553)
Q Consensus 456 ~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~-i~-L~~Lr~L~l~~~~l~~L-P~~i-~L 531 (553)
.++.+.+ +.+.-..+.+..|..+.+|+.|+|+++ .+..+|.. ++ +.+|++|+++++.++.+ |..+ .+
T Consensus 55 ~L~~L~L--s~N~l~~~~~~~~~~l~~L~~L~Ls~N-------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 125 (192)
T 1w8a_A 55 HLVKLEL--KRNQLTGIEPNAFEGASHIQELQLGEN-------KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125 (192)
T ss_dssp TCCEEEC--CSSCCCCBCTTTTTTCTTCCEEECCSC-------CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTC
T ss_pred CCCEEEC--CCCCCCCcCHhHcCCcccCCEEECCCC-------cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcC
Confidence 3444444 333344566788999999999999998 55557754 54 99999999999999987 5667 69
Q ss_pred CCccEEEcCCCCcc
Q 037613 532 KKLVVIEMPHSNIQ 545 (553)
Q Consensus 532 ~~L~~L~l~~s~i~ 545 (553)
.+|++|+|+++.+.
T Consensus 126 ~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 126 NSLTSLNLASNPFN 139 (192)
T ss_dssp TTCCEEECTTCCBC
T ss_pred CCCCEEEeCCCCcc
Confidence 99999999998764
No 74
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.91 E-value=1.8e-05 Score=72.70 Aligned_cols=80 Identities=18% Similarity=0.280 Sum_probs=63.8
Q ss_pred ccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCC-CCC-CCCeeEEEecCCCCCCCCCC-C-CC
Q 037613 456 SIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQE-SPG-FAEVRFLHRHGYPLKSLPSN-I-NQ 531 (553)
Q Consensus 456 ~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~-~i~-L~~Lr~L~l~~~~l~~LP~~-i-~L 531 (553)
.++.+.+ +.+.-..+++..|..+.+|+.|+|+++ .+..+|. .++ |.+|++|+|+++.++.+|.. | .+
T Consensus 55 ~L~~L~L--s~N~i~~i~~~~f~~l~~L~~L~Ls~N-------~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l 125 (193)
T 2wfh_A 55 HLTLIDL--SNNRISTLSNQSFSNMTQLLTLILSYN-------RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDL 125 (193)
T ss_dssp TCCEEEC--CSSCCCCCCTTTTTTCTTCCEEECCSS-------CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred CCCEEEC--CCCcCCEeCHhHccCCCCCCEEECCCC-------ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcC
Confidence 3444444 444344567788999999999999998 5666775 455 99999999999999999986 5 69
Q ss_pred CCccEEEcCCCCc
Q 037613 532 KKLVVIEMPHSNI 544 (553)
Q Consensus 532 ~~L~~L~l~~s~i 544 (553)
.+|++|+|+++.+
T Consensus 126 ~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 126 SALSHLAIGANPL 138 (193)
T ss_dssp TTCCEEECCSSCE
T ss_pred ccccEEEeCCCCe
Confidence 9999999998765
No 75
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.90 E-value=1.4e-05 Score=86.92 Aligned_cols=72 Identities=24% Similarity=0.334 Sum_probs=46.6
Q ss_pred ccChhHhhcCCCCcEEEeecccCCCCCCCccccCCC-CC-CCCeeEEEecCCCCCCCCCCC--CCCCccEEEcCCCCccc
Q 037613 471 RLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQES-PG-FAEVRFLHRHGYPLKSLPSNI--NQKKLVVIEMPHSNIQQ 546 (553)
Q Consensus 471 ~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~-i~-L~~Lr~L~l~~~~l~~LP~~i--~L~~L~~L~l~~s~i~~ 546 (553)
.+++..|..+++|+.|+|++| .+..+|.. ++ |.+|++|+|++|.++.+|..+ ++.+|++|+|++|.+..
T Consensus 89 ~~~~~~~~~l~~L~~L~L~~n-------~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 161 (597)
T 3oja_B 89 EIDTYAFAYAHTIQKLYMGFN-------AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 161 (597)
T ss_dssp EECTTTTTTCTTCCEEECCSS-------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCChHHhcCCCCCCEEECCCC-------cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC
Confidence 344455666666666666666 34445543 34 777777777777777777664 47777777777777766
Q ss_pred CCC
Q 037613 547 FWD 549 (553)
Q Consensus 547 lp~ 549 (553)
+|.
T Consensus 162 ~~~ 164 (597)
T 3oja_B 162 IED 164 (597)
T ss_dssp CCT
T ss_pred CCh
Confidence 654
No 76
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.90 E-value=5.4e-06 Score=82.38 Aligned_cols=70 Identities=23% Similarity=0.287 Sum_probs=40.6
Q ss_pred hhHhhcCCCCcEEEeecccCCCCCCCcc-ccCCCCC-CCCeeEEEecCCCCC-CCCCCC-CCCCccEEEcCCCCcc-cCC
Q 037613 474 PNTFVKMHKLRFLKFYNSINGDNRCKVS-YLQESPG-FAEVRFLHRHGYPLK-SLPSNI-NQKKLVVIEMPHSNIQ-QFW 548 (553)
Q Consensus 474 ~~~~~~~~~LrvL~l~~~~~~~~~~~l~-~lp~~i~-L~~Lr~L~l~~~~l~-~LP~~i-~L~~L~~L~l~~s~i~-~lp 548 (553)
+..|.++++|++|+|+++. +. .+|..++ +.+|++|++++|.+. .+|..+ ++.+|++|+|+++++. .+|
T Consensus 94 p~~l~~l~~L~~L~Ls~n~-------l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 166 (313)
T 1ogq_A 94 PPAIAKLTQLHYLYITHTN-------VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166 (313)
T ss_dssp CGGGGGCTTCSEEEEEEEC-------CEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred ChhHhcCCCCCEEECcCCe-------eCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC
Confidence 3345555555555555552 32 3555554 666666666666655 566666 5666666666666665 555
Q ss_pred CC
Q 037613 549 DG 550 (553)
Q Consensus 549 ~~ 550 (553)
..
T Consensus 167 ~~ 168 (313)
T 1ogq_A 167 DS 168 (313)
T ss_dssp GG
T ss_pred HH
Confidence 43
No 77
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.89 E-value=1.5e-05 Score=83.38 Aligned_cols=72 Identities=18% Similarity=0.259 Sum_probs=43.6
Q ss_pred ccChhHhhcCCCCcEEEeecccCCCCCCCccccC-CCCC-CCCeeEEEecCCCCCCCCCC-C-CCCCccEEEcCCCCccc
Q 037613 471 RLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQ-ESPG-FAEVRFLHRHGYPLKSLPSN-I-NQKKLVVIEMPHSNIQQ 546 (553)
Q Consensus 471 ~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp-~~i~-L~~Lr~L~l~~~~l~~LP~~-i-~L~~L~~L~l~~s~i~~ 546 (553)
.+.+..|.++++|+.|+|+++ .+..++ ..++ |.+|++|+|++|.++.+|.. + ++.+|++|+|+++++..
T Consensus 89 ~~~~~~~~~l~~L~~L~Ls~n-------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 161 (452)
T 3zyi_A 89 MIQADTFRHLHHLEVLQLGRN-------SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES 161 (452)
T ss_dssp EECTTTTTTCTTCCEEECCSS-------CCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE
T ss_pred eECHHHcCCCCCCCEEECCCC-------ccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce
Confidence 345556666677777777666 333344 3343 66666666666666666655 3 46666666666666666
Q ss_pred CCC
Q 037613 547 FWD 549 (553)
Q Consensus 547 lp~ 549 (553)
+|.
T Consensus 162 ~~~ 164 (452)
T 3zyi_A 162 IPS 164 (452)
T ss_dssp ECT
T ss_pred eCH
Confidence 654
No 78
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.88 E-value=1.1e-05 Score=81.46 Aligned_cols=71 Identities=11% Similarity=0.176 Sum_probs=34.0
Q ss_pred cChhHhhcCCCCcEEEeecccCCCCCCCccccC-CCCC-CCCeeEEEecCCCCCCCCCC-C-CCCCccEEEcCCCCcccC
Q 037613 472 LNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQ-ESPG-FAEVRFLHRHGYPLKSLPSN-I-NQKKLVVIEMPHSNIQQF 547 (553)
Q Consensus 472 ~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp-~~i~-L~~Lr~L~l~~~~l~~LP~~-i-~L~~L~~L~l~~s~i~~l 547 (553)
++...|.++++|+.|+|+++ .+..++ ..++ +.+|++|++++|.++.+|.. + ++.+|++|+|+++++..+
T Consensus 67 ~~~~~~~~l~~L~~L~L~~n-------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l 139 (353)
T 2z80_A 67 ISNSDLQRCVNLQALVLTSN-------GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTL 139 (353)
T ss_dssp ECTTTTTTCTTCCEEECTTS-------CCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSS
T ss_pred cCHHHhccCCCCCEEECCCC-------ccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCccc
Confidence 33444555555555555554 222232 2232 55555555555555555544 3 355555555555555554
Q ss_pred CC
Q 037613 548 WD 549 (553)
Q Consensus 548 p~ 549 (553)
|.
T Consensus 140 ~~ 141 (353)
T 2z80_A 140 GE 141 (353)
T ss_dssp CS
T ss_pred Cc
Confidence 43
No 79
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.88 E-value=1.2e-05 Score=79.94 Aligned_cols=68 Identities=10% Similarity=0.099 Sum_probs=52.3
Q ss_pred hhcCCCCcEEEeecccCCCCCCCccccCCCCCCCCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCcccCCCCC
Q 037613 477 FVKMHKLRFLKFYNSINGDNRCKVSYLQESPGFAEVRFLHRHGYPLKSLPSNI-NQKKLVVIEMPHSNIQQFWDGT 551 (553)
Q Consensus 477 ~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~L~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~~s~i~~lp~~~ 551 (553)
+..+++|+.|+|++| .+..+|....+.+|++|++++|.++.+|..+ .+.+|++|+|+++++..+|..+
T Consensus 165 ~~~l~~L~~L~L~~N-------~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~ 233 (317)
T 3o53_A 165 AASSDTLEHLNLQYN-------FIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL 233 (317)
T ss_dssp GGGTTTCCEEECTTS-------CCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTC
T ss_pred hhccCcCCEEECCCC-------cCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHh
Confidence 356788888888877 4555665556788888888888888888878 6888888888888888887654
No 80
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.88 E-value=1.6e-05 Score=80.56 Aligned_cols=88 Identities=14% Similarity=0.210 Sum_probs=70.0
Q ss_pred cccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCC-CC-CCCeeEEEecCCCCCCCC-CCC-C
Q 037613 455 KSIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQES-PG-FAEVRFLHRHGYPLKSLP-SNI-N 530 (553)
Q Consensus 455 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~-i~-L~~Lr~L~l~~~~l~~LP-~~i-~ 530 (553)
..++.+.+.. +.-..+++..|..+++|+.|+|+++ .+..+|.. ++ |.+|++|+|++|.+..++ ..| +
T Consensus 64 ~~L~~L~L~~--N~i~~i~~~~~~~l~~L~~L~Ls~N-------~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~ 134 (361)
T 2xot_A 64 TNLHSLLLSH--NHLNFISSEAFVPVPNLRYLDLSSN-------HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED 134 (361)
T ss_dssp TTCCEEECCS--SCCCEECTTTTTTCTTCCEEECCSS-------CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred cccCEEECCC--CcCCccChhhccCCCCCCEEECCCC-------cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCC
Confidence 4444444443 3344567778999999999999998 56668764 44 999999999999999985 567 7
Q ss_pred CCCccEEEcCCCCcccCCCCC
Q 037613 531 QKKLVVIEMPHSNIQQFWDGT 551 (553)
Q Consensus 531 L~~L~~L~l~~s~i~~lp~~~ 551 (553)
+.+|++|+|++++|..+|.+.
T Consensus 135 l~~L~~L~L~~N~l~~l~~~~ 155 (361)
T 2xot_A 135 MAQLQKLYLSQNQISRFPVEL 155 (361)
T ss_dssp CTTCCEEECCSSCCCSCCGGG
T ss_pred cccCCEEECCCCcCCeeCHHH
Confidence 999999999999999998753
No 81
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.87 E-value=1.1e-05 Score=85.86 Aligned_cols=68 Identities=16% Similarity=0.276 Sum_probs=40.5
Q ss_pred ccChhHhhcCCCCcEEEeecccCCCCCCCcccc-CCCCC-CCCeeEEEecCCCCCCCCCCCCCCCccEEEcCCCCccc
Q 037613 471 RLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYL-QESPG-FAEVRFLHRHGYPLKSLPSNINQKKLVVIEMPHSNIQQ 546 (553)
Q Consensus 471 ~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~l-p~~i~-L~~Lr~L~l~~~~l~~LP~~i~L~~L~~L~l~~s~i~~ 546 (553)
.+++..|.++++|++|+|+++ .+..+ |..++ |.+|++|++++|.++.+|.. .+.+|++|+|+++++..
T Consensus 35 ~~~~~~~~~l~~L~~L~Ls~n-------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~ 104 (520)
T 2z7x_B 35 ELWTSDILSLSKLRILIISHN-------RIQYLDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFDA 104 (520)
T ss_dssp CCCHHHHTTCTTCCEEECCSS-------CCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCSS
T ss_pred ccChhhccccccccEEecCCC-------ccCCcChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEeccCCcccc
Confidence 344556666666666666666 33334 34443 66666666666666666665 66666666666666654
No 82
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.86 E-value=1.8e-05 Score=79.08 Aligned_cols=64 Identities=16% Similarity=0.270 Sum_probs=31.5
Q ss_pred hhHhhcCCCCcEEEeecccCCCCCCCccccCCCCCCCCeeEEEecCCCCCCCCCC-C-CCCCccEEEcCCCCcc
Q 037613 474 PNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPGFAEVRFLHRHGYPLKSLPSN-I-NQKKLVVIEMPHSNIQ 545 (553)
Q Consensus 474 ~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~L~~Lr~L~l~~~~l~~LP~~-i-~L~~L~~L~l~~s~i~ 545 (553)
+..|.++++|+.|+|+++ .+..+|..+. .+|++|+++++.++.+|.. + ++.+|++|+|+++.+.
T Consensus 95 ~~~~~~l~~L~~L~L~~n-------~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 95 EKAFSPLRKLQKLYISKN-------HLVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp GGGSTTCTTCCEEECCSS-------CCCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred HhHhhCcCCCCEEECCCC-------cCCccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 344444555555555444 2333443333 4555555555555555543 3 4555555555555554
No 83
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.86 E-value=1.3e-05 Score=80.20 Aligned_cols=71 Identities=20% Similarity=0.308 Sum_probs=41.8
Q ss_pred cChhHhhcCCCCcEEEeecccCCCCCCCccccCC-CCC-CCCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCcccCC
Q 037613 472 LNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQE-SPG-FAEVRFLHRHGYPLKSLPSNI-NQKKLVVIEMPHSNIQQFW 548 (553)
Q Consensus 472 ~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~-~i~-L~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~~s~i~~lp 548 (553)
+++..|..+++|+.|+|+++ .+..+|. .++ +.+|++|++++|.++.+|..+ ++.+|++|+|++++|..+|
T Consensus 208 ~~~~~l~~l~~L~~L~L~~N-------~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 208 IELEDLLRYSKLYRLGLGHN-------QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVG 280 (332)
T ss_dssp CCTTSSTTCTTCSCCBCCSS-------CCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCC
T ss_pred cCHHHhcCCCCCCEEECCCC-------cCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccC
Confidence 34445566666666666665 2333443 333 666666666666666666666 5666666666666666655
Q ss_pred C
Q 037613 549 D 549 (553)
Q Consensus 549 ~ 549 (553)
.
T Consensus 281 ~ 281 (332)
T 2ft3_A 281 V 281 (332)
T ss_dssp T
T ss_pred h
Confidence 3
No 84
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.86 E-value=1.5e-05 Score=86.75 Aligned_cols=70 Identities=20% Similarity=0.246 Sum_probs=44.9
Q ss_pred ccChhHhhcCCCCcEEEeecccCCCCCCCccccCCC-CC-CCCeeEEEecCCCCCCCCCC-C-CCCCccEEEcCCCCccc
Q 037613 471 RLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQES-PG-FAEVRFLHRHGYPLKSLPSN-I-NQKKLVVIEMPHSNIQQ 546 (553)
Q Consensus 471 ~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~-i~-L~~Lr~L~l~~~~l~~LP~~-i-~L~~L~~L~l~~s~i~~ 546 (553)
.+++.+|.++++|++|+|++| .++.+|.. ++ |.+|++|++++|+++.+|.. | +|.+|++|+|+++.+..
T Consensus 90 ~i~~~~f~~L~~L~~L~Ls~N-------~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~ 162 (635)
T 4g8a_A 90 TIEDGAYQSLSHLSTLILTGN-------PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 162 (635)
T ss_dssp EECTTTTTTCTTCCEEECTTC-------CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred CcChhHhcCCCCCCEEEccCC-------cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcccc
Confidence 455666777777777777766 45556643 33 66777777777776666654 4 56677777776666654
Q ss_pred C
Q 037613 547 F 547 (553)
Q Consensus 547 l 547 (553)
+
T Consensus 163 ~ 163 (635)
T 4g8a_A 163 F 163 (635)
T ss_dssp C
T ss_pred C
Confidence 3
No 85
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.85 E-value=2.8e-05 Score=79.59 Aligned_cols=71 Identities=14% Similarity=0.200 Sum_probs=43.3
Q ss_pred ccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCC-C-CCCeeEEEecCCCCCCCCCC-C-CCCCccEEEcCCCCccc
Q 037613 471 RLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESP-G-FAEVRFLHRHGYPLKSLPSN-I-NQKKLVVIEMPHSNIQQ 546 (553)
Q Consensus 471 ~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i-~-L~~Lr~L~l~~~~l~~LP~~-i-~L~~L~~L~l~~s~i~~ 546 (553)
.+++..|.++++|+.|+|+++ .+..+|..+ + +.+|++|++++|.+..+|.. + ++.+|++|+|+++++..
T Consensus 107 ~~~~~~~~~l~~L~~L~L~~n-------~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 107 YLPPHVFQNVPLLTVLVLERN-------DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp CCCTTTTTTCTTCCEEECCSS-------CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred cCCHHHhcCCCCCCEEECCCC-------ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 344555666666666666666 444466553 3 66666666666666666543 4 46666666666666655
Q ss_pred CC
Q 037613 547 FW 548 (553)
Q Consensus 547 lp 548 (553)
++
T Consensus 180 ~~ 181 (390)
T 3o6n_A 180 VD 181 (390)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 86
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.84 E-value=2.9e-05 Score=75.74 Aligned_cols=74 Identities=15% Similarity=0.222 Sum_probs=55.1
Q ss_pred ccChhHhhcCCCCcEEEeecccCCCCCCCcccc-CCCCC-CCCeeEEEecCCCCCCCCC-CC-CCCCccEEEcCCCCccc
Q 037613 471 RLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYL-QESPG-FAEVRFLHRHGYPLKSLPS-NI-NQKKLVVIEMPHSNIQQ 546 (553)
Q Consensus 471 ~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~l-p~~i~-L~~Lr~L~l~~~~l~~LP~-~i-~L~~L~~L~l~~s~i~~ 546 (553)
.+.+..|..+++|+.|+|+++. .+..+ |..++ +.+|++|++++|.+..+|. .+ ++.+|++|+|+++.+..
T Consensus 70 ~~~~~~~~~l~~L~~L~l~~n~------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 143 (285)
T 1ozn_A 70 RIDAAAFTGLALLEQLDLSDNA------QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSCT------TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred eeCHhhcCCccCCCEEeCCCCC------CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc
Confidence 4456677788888888888773 14446 45554 8889999998888888854 45 68899999999888888
Q ss_pred CCCC
Q 037613 547 FWDG 550 (553)
Q Consensus 547 lp~~ 550 (553)
+|.+
T Consensus 144 ~~~~ 147 (285)
T 1ozn_A 144 LPDD 147 (285)
T ss_dssp CCTT
T ss_pred cCHh
Confidence 8754
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.84 E-value=2.1e-05 Score=76.40 Aligned_cols=71 Identities=20% Similarity=0.324 Sum_probs=47.2
Q ss_pred ccChhHhhcCCCCcEEEeecccCCCCCCCccccCC-CCC-CCCeeEEEecCCCCCC--CCCCC-CCCCccEEEcCCCCcc
Q 037613 471 RLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQE-SPG-FAEVRFLHRHGYPLKS--LPSNI-NQKKLVVIEMPHSNIQ 545 (553)
Q Consensus 471 ~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~-~i~-L~~Lr~L~l~~~~l~~--LP~~i-~L~~L~~L~l~~s~i~ 545 (553)
.+++..|.++.+|+.|++.++ .+..++. .++ +.+|++|+++++.++. +|..+ ++.+|++|+|+++++.
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n-------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVET-------NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTS-------CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ccChhhhcCCccccEEECCCC-------CccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 344555666667777777666 3333554 344 7777788887777776 56777 6778888888777777
Q ss_pred cCC
Q 037613 546 QFW 548 (553)
Q Consensus 546 ~lp 548 (553)
.+|
T Consensus 163 ~~~ 165 (276)
T 2z62_A 163 SIY 165 (276)
T ss_dssp EEC
T ss_pred cCC
Confidence 665
No 88
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.83 E-value=3.3e-05 Score=75.28 Aligned_cols=88 Identities=17% Similarity=0.216 Sum_probs=67.4
Q ss_pred cccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCcccc-CCCCC-CCCeeEEEecCCCCCCCCCC-C-C
Q 037613 455 KSIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYL-QESPG-FAEVRFLHRHGYPLKSLPSN-I-N 530 (553)
Q Consensus 455 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~l-p~~i~-L~~Lr~L~l~~~~l~~LP~~-i-~ 530 (553)
..++.+.+..... ...+.+..|..+++|+.|+|+++. +..+ |..++ +.+|++|+++++.++.+|.. + +
T Consensus 80 ~~L~~L~l~~n~~-l~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 151 (285)
T 1ozn_A 80 ALLEQLDLSDNAQ-LRSVDPATFHGLGRLHTLHLDRCG-------LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151 (285)
T ss_dssp TTCCEEECCSCTT-CCCCCTTTTTTCTTCCEEECTTSC-------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCCEEeCCCCCC-ccccCHHHhcCCcCCCEEECCCCc-------CCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc
Confidence 4445444443320 334557789999999999999984 4446 45565 99999999999999999976 5 6
Q ss_pred CCCccEEEcCCCCcccCCCC
Q 037613 531 QKKLVVIEMPHSNIQQFWDG 550 (553)
Q Consensus 531 L~~L~~L~l~~s~i~~lp~~ 550 (553)
+.+|++|+|+++++..+|.+
T Consensus 152 l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 152 LGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp CTTCCEEECCSSCCCEECTT
T ss_pred CCCccEEECCCCcccccCHH
Confidence 99999999999999998864
No 89
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.83 E-value=2.2e-05 Score=82.59 Aligned_cols=69 Identities=20% Similarity=0.290 Sum_probs=36.6
Q ss_pred cChhHhhcCCCCcEEEeecccCCCCCCCcccc-CCCCC-CCCeeEEEecCCCCCCCCCC-C-CCCCccEEEcCCCCcccC
Q 037613 472 LNPNTFVKMHKLRFLKFYNSINGDNRCKVSYL-QESPG-FAEVRFLHRHGYPLKSLPSN-I-NQKKLVVIEMPHSNIQQF 547 (553)
Q Consensus 472 ~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~l-p~~i~-L~~Lr~L~l~~~~l~~LP~~-i-~L~~L~~L~l~~s~i~~l 547 (553)
+.+..|.++++|+.|+|+++ .+..+ |..++ |.+|++|+|++|.++.+|.. | ++.+|++|+|+++++..+
T Consensus 47 ~~~~~~~~l~~L~~L~L~~n-------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~ 119 (477)
T 2id5_A 47 LNQDEFASFPHLEELELNEN-------IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL 119 (477)
T ss_dssp ECTTTTTTCTTCCEEECTTS-------CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE
T ss_pred ECHhHccCCCCCCEEECCCC-------ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC
Confidence 34455556666666666555 23333 33443 55555555555555555544 2 455555555555555544
No 90
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.82 E-value=2.9e-05 Score=84.38 Aligned_cols=72 Identities=14% Similarity=0.186 Sum_probs=49.3
Q ss_pred cccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCC-C-CCCeeEEEecCCCCCCCCCC-C-CCCCccEEEcCCCCcc
Q 037613 470 IRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESP-G-FAEVRFLHRHGYPLKSLPSN-I-NQKKLVVIEMPHSNIQ 545 (553)
Q Consensus 470 ~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i-~-L~~Lr~L~l~~~~l~~LP~~-i-~L~~L~~L~l~~s~i~ 545 (553)
..+++..|..+++|++|+|++| .+..+|..+ + +.+|++|++++|.+..+|+. | ++.+|++|+|+++.+.
T Consensus 112 ~~~~~~~~~~l~~L~~L~L~~n-------~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 112 RYLPPHVFQNVPLLTVLVLERN-------DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-------CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCCHHHHcCCCCCCEEEeeCC-------CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence 3455666777777777777776 444566654 4 77777777777777776653 5 5777777777777776
Q ss_pred cCC
Q 037613 546 QFW 548 (553)
Q Consensus 546 ~lp 548 (553)
.+|
T Consensus 185 ~~~ 187 (597)
T 3oja_B 185 HVD 187 (597)
T ss_dssp BCC
T ss_pred CcC
Confidence 654
No 91
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.81 E-value=1e-05 Score=80.35 Aligned_cols=67 Identities=12% Similarity=0.209 Sum_probs=36.8
Q ss_pred ChhHhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCC-CCCCCC-CCC-CccEEEcCCCCcc
Q 037613 473 NPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLK-SLPSNI-NQK-KLVVIEMPHSNIQ 545 (553)
Q Consensus 473 ~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~-~LP~~i-~L~-~L~~L~l~~s~i~ 545 (553)
.+..|.++++|++|+|+++.+.+ .+|..++ +.+|++|++++|.+. .+|..+ ++. +|++|+|+++++.
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~l~~------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNALSG------TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEES------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred CCHHHhCCCCCCEEeCCCCccCC------cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 34455566666666666553221 3455553 556666666666655 556555 454 5666666665554
No 92
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.80 E-value=3.2e-05 Score=77.16 Aligned_cols=71 Identities=18% Similarity=0.278 Sum_probs=46.2
Q ss_pred cccChhHhhcCCCCcEEEeecccCCCCCCCcccc-CCCCC-CCCeeEEEecCCCCCCCCCCCCCCCccEEEcCCCCcccC
Q 037613 470 IRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYL-QESPG-FAEVRFLHRHGYPLKSLPSNINQKKLVVIEMPHSNIQQF 547 (553)
Q Consensus 470 ~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~l-p~~i~-L~~Lr~L~l~~~~l~~LP~~i~L~~L~~L~l~~s~i~~l 547 (553)
..+++..|.++++|+.|+|+++. +..+ |..++ +.+|++|+++++.++.+|..+. .+|++|+++++.+..+
T Consensus 65 ~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~~L~~L~l~~n~l~~~ 136 (330)
T 1xku_A 65 TEIKDGDFKNLKNLHTLILINNK-------ISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-KTLQELRVHENEITKV 136 (330)
T ss_dssp CCBCTTTTTTCTTCCEEECCSSC-------CCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC-TTCCEEECCSSCCCBB
T ss_pred CEeChhhhccCCCCCEEECCCCc-------CCeeCHHHhcCCCCCCEEECCCCcCCccChhhc-ccccEEECCCCccccc
Confidence 34455567777777777777763 3334 55564 7777777777777777776654 5666666666666555
Q ss_pred C
Q 037613 548 W 548 (553)
Q Consensus 548 p 548 (553)
|
T Consensus 137 ~ 137 (330)
T 1xku_A 137 R 137 (330)
T ss_dssp C
T ss_pred C
Confidence 4
No 93
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.80 E-value=1.8e-05 Score=83.72 Aligned_cols=72 Identities=11% Similarity=0.111 Sum_probs=56.4
Q ss_pred ChhHh-hcCCCCcEEEeecccCCCCCCCccccCCCCCCCCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCcccCCCC
Q 037613 473 NPNTF-VKMHKLRFLKFYNSINGDNRCKVSYLQESPGFAEVRFLHRHGYPLKSLPSNI-NQKKLVVIEMPHSNIQQFWDG 550 (553)
Q Consensus 473 ~~~~~-~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~L~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~~s~i~~lp~~ 550 (553)
.+..| ..+++|+.|+|++| .+..+|....+.+|++|++++|.++.+|+.+ .+.+|++|+|+++.+..+|..
T Consensus 160 ~~~~l~~~l~~L~~L~Ls~N-------~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 232 (487)
T 3oja_A 160 NFAELAASSDTLEHLNLQYN-------FIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA 232 (487)
T ss_dssp EGGGGGGGTTTCCEEECTTS-------CCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTT
T ss_pred ChHHHhhhCCcccEEecCCC-------ccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchh
Confidence 34444 47888888888888 4444665556888999999999888888888 688999999999888888875
Q ss_pred C
Q 037613 551 T 551 (553)
Q Consensus 551 ~ 551 (553)
+
T Consensus 233 l 233 (487)
T 3oja_A 233 L 233 (487)
T ss_dssp C
T ss_pred h
Confidence 4
No 94
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.79 E-value=2.6e-05 Score=75.72 Aligned_cols=73 Identities=18% Similarity=0.207 Sum_probs=51.9
Q ss_pred ccChhHhhcCCCCcEEEeecccCCCCCCCccccC-CCCC-CCCeeEEEecCCCCCCCCC-CC-CCCCccEEEcCCCCccc
Q 037613 471 RLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQ-ESPG-FAEVRFLHRHGYPLKSLPS-NI-NQKKLVVIEMPHSNIQQ 546 (553)
Q Consensus 471 ~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp-~~i~-L~~Lr~L~l~~~~l~~LP~-~i-~L~~L~~L~l~~s~i~~ 546 (553)
.+++..|..+++|+.|+|+++ .+..+| ..++ +.+|++|+++++.+..+|. .+ ++.+|++|+|+++.+..
T Consensus 66 ~~~~~~~~~l~~L~~L~L~~n-------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 138 (276)
T 2z62_A 66 TIEDGAYQSLSHLSTLILTGN-------PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTC-------CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred ccCHHHccCCcCCCEEECCCC-------ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccce
Confidence 455566777778888888777 344455 3454 7888888888888888776 45 68888888888888776
Q ss_pred --CCCC
Q 037613 547 --FWDG 550 (553)
Q Consensus 547 --lp~~ 550 (553)
+|..
T Consensus 139 ~~l~~~ 144 (276)
T 2z62_A 139 FKLPEY 144 (276)
T ss_dssp CCCCGG
T ss_pred ecCchh
Confidence 4543
No 95
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.78 E-value=2.5e-05 Score=83.96 Aligned_cols=68 Identities=19% Similarity=0.321 Sum_probs=35.2
Q ss_pred hhHhhcCCCCcEEEeecccCCCCCCCccccCC-CCC-CCCeeEEEecCCCCCC--CCCCC-CCCCccEEEcCCCCcccCC
Q 037613 474 PNTFVKMHKLRFLKFYNSINGDNRCKVSYLQE-SPG-FAEVRFLHRHGYPLKS--LPSNI-NQKKLVVIEMPHSNIQQFW 548 (553)
Q Consensus 474 ~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~-~i~-L~~Lr~L~l~~~~l~~--LP~~i-~L~~L~~L~l~~s~i~~lp 548 (553)
+..|..+++|+.|+++++ .+..+|. .++ |.+|++|++++|.++. +|..| ++.+|++|+++++++..+|
T Consensus 93 ~~~~~~l~~L~~L~L~~n-------~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 93 LGAFSGLSSLQKLVAVET-------NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp TTTTTTCTTCCEEECTTS-------CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred HhhhcCcccccccccccc-------ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence 344444444444444444 3333443 233 5566666666665554 45555 4666666666666555543
No 96
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.77 E-value=7.3e-05 Score=75.85 Aligned_cols=50 Identities=30% Similarity=0.383 Sum_probs=41.9
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
|.....++|++..++.+...+.. ...+.|+|++|+||||+|+.+++.+..
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34456799999999999998866 457899999999999999999986643
No 97
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.77 E-value=1.7e-06 Score=79.85 Aligned_cols=64 Identities=13% Similarity=0.165 Sum_probs=29.4
Q ss_pred HhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCcccC
Q 037613 476 TFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSLPSNI-NQKKLVVIEMPHSNIQQF 547 (553)
Q Consensus 476 ~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~~s~i~~l 547 (553)
.|..+++|+.|+|+++ .+..+| .++ +.+|++|++++|.++.+|..+ .+.+|++|+|+++++..+
T Consensus 43 ~~~~l~~L~~L~ls~n-------~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l 108 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN-------NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL 108 (198)
T ss_dssp HHHHTTTCSEEECSEE-------EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCH
T ss_pred HHhcCCCCCEEECCCC-------CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcC
Confidence 4444555555555444 233344 332 445555555555444444444 344444444444444443
No 98
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.76 E-value=2.9e-05 Score=80.87 Aligned_cols=62 Identities=15% Similarity=0.328 Sum_probs=28.8
Q ss_pred ChhHhhcCCCCcEEEeecccCCCCCCCccccCCC-CC-CCCeeEEEecCCCCCCCCCC-C-CCCCccEEEcCC
Q 037613 473 NPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQES-PG-FAEVRFLHRHGYPLKSLPSN-I-NQKKLVVIEMPH 541 (553)
Q Consensus 473 ~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~-i~-L~~Lr~L~l~~~~l~~LP~~-i-~L~~L~~L~l~~ 541 (553)
.+..|.++++|+.|+|+++ .+..+|.. ++ +.+|++|++++|+++.+|.. | ++.+|++|+|++
T Consensus 104 ~~~~~~~l~~L~~L~L~~n-------~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 104 EIGAFNGLANLNTLELFDN-------RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp CGGGGTTCSSCCEEECCSS-------CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred ChhhccCCccCCEEECCCC-------cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCC
Confidence 3344444555555555444 23334432 22 55555555555555555442 2 355555555554
No 99
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.74 E-value=8.1e-05 Score=68.55 Aligned_cols=35 Identities=23% Similarity=0.214 Sum_probs=28.6
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..+.|+|++|+|||+||+++++.........+++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 78999999999999999999997765544455554
No 100
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.74 E-value=3e-05 Score=83.41 Aligned_cols=75 Identities=17% Similarity=0.183 Sum_probs=54.9
Q ss_pred cccChhHhhcCCCCcEEEeecccCCCCCCCccccC-CCCC-CCCeeEEEecCCCCCCCCC-CC-CCCCccEEEcCCCCcc
Q 037613 470 IRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQ-ESPG-FAEVRFLHRHGYPLKSLPS-NI-NQKKLVVIEMPHSNIQ 545 (553)
Q Consensus 470 ~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp-~~i~-L~~Lr~L~l~~~~l~~LP~-~i-~L~~L~~L~l~~s~i~ 545 (553)
..+++..|.++++||+|+|+++ .+..+| ..++ +.+|++|+++++.++.+|. .+ ++.+|++|+|+++.+.
T Consensus 65 ~~i~~~~~~~l~~L~~L~L~~n-------~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~ 137 (570)
T 2z63_A 65 QTIEDGAYQSLSHLSTLILTGN-------PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTC-------CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCC
T ss_pred CccCcccccCchhCCEEeCcCC-------cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccc
Confidence 3455667777888888888777 444465 4554 8888888888888888886 46 6888888888888887
Q ss_pred c--CCCCC
Q 037613 546 Q--FWDGT 551 (553)
Q Consensus 546 ~--lp~~~ 551 (553)
. +|.++
T Consensus 138 ~~~lp~~~ 145 (570)
T 2z63_A 138 SFKLPEYF 145 (570)
T ss_dssp CCCCCGGG
T ss_pred eecChhhh
Confidence 5 56543
No 101
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.72 E-value=2.2e-05 Score=74.52 Aligned_cols=72 Identities=15% Similarity=0.329 Sum_probs=43.5
Q ss_pred ccChhHhhcCCCCcEEEeec-ccCCCCCCCccccCCC-C-CCCCeeEEEecCCCCCCCCCCC-CCCCcc---EEEcCCC-
Q 037613 471 RLNPNTFVKMHKLRFLKFYN-SINGDNRCKVSYLQES-P-GFAEVRFLHRHGYPLKSLPSNI-NQKKLV---VIEMPHS- 542 (553)
Q Consensus 471 ~~~~~~~~~~~~LrvL~l~~-~~~~~~~~~l~~lp~~-i-~L~~Lr~L~l~~~~l~~LP~~i-~L~~L~---~L~l~~s- 542 (553)
.+++..|..+++|+.|+|++ + .+..+|.. + ++.+|++|++++|.++.+|. + .+.+|+ +|+++++
T Consensus 70 ~i~~~~f~~l~~L~~L~l~~~n-------~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~ 141 (239)
T 2xwt_C 70 QLESHSFYNLSKVTHIEIRNTR-------NLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNP 141 (239)
T ss_dssp EECTTTEESCTTCCEEEEEEET-------TCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCT
T ss_pred eeCHhHcCCCcCCcEEECCCCC-------CeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCc
Confidence 34445566666666666665 4 44445543 3 36677777777776666666 4 455555 7777766
Q ss_pred CcccCCCC
Q 037613 543 NIQQFWDG 550 (553)
Q Consensus 543 ~i~~lp~~ 550 (553)
++..+|.+
T Consensus 142 ~l~~i~~~ 149 (239)
T 2xwt_C 142 YMTSIPVN 149 (239)
T ss_dssp TCCEECTT
T ss_pred chhhcCcc
Confidence 66666653
No 102
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.72 E-value=5e-05 Score=85.65 Aligned_cols=85 Identities=15% Similarity=0.215 Sum_probs=58.3
Q ss_pred ccccccccCCCccccccCh-hHhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCCCCCC-CCC
Q 037613 456 SIEGICLDMSKANEIRLNP-NTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSLPSNI-NQK 532 (553)
Q Consensus 456 ~~~~i~l~~~~~~~~~~~~-~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~LP~~i-~L~ 532 (553)
.++.+.+...... .++. ..|.++++|+.|+|++| .+..+| .++ +.+|++|++++|.+..+|..+ ++.
T Consensus 549 ~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N-------~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~ 618 (876)
T 4ecn_A 549 KIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHN-------KVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFT 618 (876)
T ss_dssp TCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTS-------CCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEEC
T ss_pred CccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCC-------Ccccch-hhcCCCcceEEECcCCccccchHHHhhcc
Confidence 4454444444322 3443 36778888888888877 445577 554 788888888888877888777 577
Q ss_pred C-ccEEEcCCCCcccCCCC
Q 037613 533 K-LVVIEMPHSNIQQFWDG 550 (553)
Q Consensus 533 ~-L~~L~l~~s~i~~lp~~ 550 (553)
+ |++|+|+++++..+|..
T Consensus 619 ~~L~~L~Ls~N~L~~lp~~ 637 (876)
T 4ecn_A 619 DQVEGLGFSHNKLKYIPNI 637 (876)
T ss_dssp TTCCEEECCSSCCCSCCSC
T ss_pred ccCCEEECcCCCCCcCchh
Confidence 7 88888888877777754
No 103
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.72 E-value=5.3e-05 Score=83.47 Aligned_cols=72 Identities=18% Similarity=0.357 Sum_probs=48.9
Q ss_pred cccChhHhhcCCCCcEEEeecccCCCCCCCccccCC-CCC-CCCeeEEEecCCCCCCCCC-CC-CCCCccEEEcCCCCcc
Q 037613 470 IRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQE-SPG-FAEVRFLHRHGYPLKSLPS-NI-NQKKLVVIEMPHSNIQ 545 (553)
Q Consensus 470 ~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~-~i~-L~~Lr~L~l~~~~l~~LP~-~i-~L~~L~~L~l~~s~i~ 545 (553)
..+.+..|.++++||+|+|+++ .+..+|. .++ +.+|++|++++|.+..+|. .| ++.+|++|+|+++.+.
T Consensus 62 ~~~~~~~~~~l~~L~~L~L~~n-------~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 134 (680)
T 1ziw_A 62 SKLEPELCQKLPMLKVLNLQHN-------ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134 (680)
T ss_dssp CCCCTTHHHHCTTCCEEECCSS-------CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCS
T ss_pred CccCHHHHhcccCcCEEECCCC-------ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCccc
Confidence 3445666777777777777776 4445665 354 7777777777777777764 45 5777777777777766
Q ss_pred cCC
Q 037613 546 QFW 548 (553)
Q Consensus 546 ~lp 548 (553)
.++
T Consensus 135 ~~~ 137 (680)
T 1ziw_A 135 STK 137 (680)
T ss_dssp CCC
T ss_pred ccC
Confidence 654
No 104
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.71 E-value=4.2e-05 Score=76.90 Aligned_cols=72 Identities=15% Similarity=0.136 Sum_probs=61.6
Q ss_pred ccChhHhhcCCCCcEEEeec-ccCCCCCCCccccCC-CCC-CCCeeEEEecCCCCCCCCCC-C-CCCCccEEEcCCCCcc
Q 037613 471 RLNPNTFVKMHKLRFLKFYN-SINGDNRCKVSYLQE-SPG-FAEVRFLHRHGYPLKSLPSN-I-NQKKLVVIEMPHSNIQ 545 (553)
Q Consensus 471 ~~~~~~~~~~~~LrvL~l~~-~~~~~~~~~l~~lp~-~i~-L~~Lr~L~l~~~~l~~LP~~-i-~L~~L~~L~l~~s~i~ 545 (553)
.++. +..+.+|+.|+|++ + .+..+|. .++ |.+|++|+|+++.|+.+|.. | +|.+|++|+|++++|.
T Consensus 23 ~ip~--l~~~~~L~~L~l~~~n-------~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 23 SLHH--LPGAENLTELYIENQQ-------HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp TTTT--SCSCSCCSEEECCSCS-------SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred ccCC--CCCCCCeeEEEccCCC-------CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc
Confidence 3444 88899999999996 7 5666884 565 99999999999999999875 5 7999999999999999
Q ss_pred cCCCCC
Q 037613 546 QFWDGT 551 (553)
Q Consensus 546 ~lp~~~ 551 (553)
.+|.++
T Consensus 94 ~~~~~~ 99 (347)
T 2ifg_A 94 SLSWKT 99 (347)
T ss_dssp CCCSTT
T ss_pred eeCHHH
Confidence 999764
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.71 E-value=2.7e-05 Score=75.18 Aligned_cols=81 Identities=15% Similarity=0.124 Sum_probs=59.0
Q ss_pred cccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCCCCCCCCCC
Q 037613 455 KSIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSLPSNINQKK 533 (553)
Q Consensus 455 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~LP~~i~L~~ 533 (553)
..++.+.+...... .++ .+..+++|+.|+|+++ .+..+|. ++ |.+|++|++++|.++.+|.... .+
T Consensus 41 ~~L~~L~l~~n~i~--~l~--~l~~l~~L~~L~L~~N-------~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~ 107 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQ--SLA--GMQFFTNLKELHLSHN-------QISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS-AC 107 (263)
T ss_dssp TTCSEEECTTSCCC--CCT--TGGGCTTCCEEECCSS-------CCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC-SS
T ss_pred CcCcEEECcCCCcc--cch--HHhhCCCCCEEECCCC-------ccCCChh-hccCCCCCEEECCCCccCCcCcccc-Cc
Confidence 34455545444322 222 5788899999999888 4445766 54 8899999999999888887556 88
Q ss_pred ccEEEcCCCCcccCC
Q 037613 534 LVVIEMPHSNIQQFW 548 (553)
Q Consensus 534 L~~L~l~~s~i~~lp 548 (553)
|++|+|+++++..+|
T Consensus 108 L~~L~L~~N~l~~~~ 122 (263)
T 1xeu_A 108 LSRLFLDNNELRDTD 122 (263)
T ss_dssp CCEEECCSSCCSBSG
T ss_pred ccEEEccCCccCCCh
Confidence 999999999888775
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.71 E-value=1.4e-05 Score=73.56 Aligned_cols=64 Identities=11% Similarity=0.054 Sum_probs=33.4
Q ss_pred hhHhhcCCCCcEEEeecccCCCCCCCccccCCCC-CCCCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCcc
Q 037613 474 PNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESP-GFAEVRFLHRHGYPLKSLPSNI-NQKKLVVIEMPHSNIQ 545 (553)
Q Consensus 474 ~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i-~L~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~~s~i~ 545 (553)
+..|..+++|+.|+|++|. .+..+| .+ ++.+|++|++++|+++.+| .+ ++.+|++|++++++|.
T Consensus 129 ~~~l~~l~~L~~L~L~~n~------~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 129 LTKINTLPKVNSIDLSYNG------AITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp HHHHTTCSSCCEEECCSCT------BCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred HHHHhhCCCCCEEEccCCC------CccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 3445556666666666553 133344 23 2556666666666666655 44 4666666666665543
No 107
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.70 E-value=3.5e-05 Score=80.45 Aligned_cols=68 Identities=21% Similarity=0.252 Sum_probs=40.6
Q ss_pred ccChhHhhcCCCCcEEEeecccCCCCCCCcccc-CCCCC-CCCeeEEEecCCCCCCCCCCC--CCCCccEEEcCCCCcc
Q 037613 471 RLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYL-QESPG-FAEVRFLHRHGYPLKSLPSNI--NQKKLVVIEMPHSNIQ 545 (553)
Q Consensus 471 ~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~l-p~~i~-L~~Lr~L~l~~~~l~~LP~~i--~L~~L~~L~l~~s~i~ 545 (553)
.+.+..|..+++|++|+|++|. +..+ |..++ +.+|++|++++|+++.+|..+ .+.+|++|+|+++.+.
T Consensus 337 ~~~~~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 337 SIDSRMFENLDKLEVLDLSYNH-------IRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp EECGGGGTTCTTCCEEECCSSC-------CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcChhHhcCcccCCEEECCCCc-------ccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 3445556666666666666663 3334 44443 666666666666666666543 4666666666666554
No 108
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.70 E-value=2.7e-05 Score=73.86 Aligned_cols=86 Identities=12% Similarity=0.215 Sum_probs=56.9
Q ss_pred cccccccccC-CCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCC-CCCCee---EEEecCC-CCCCCCCC
Q 037613 455 KSIEGICLDM-SKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESP-GFAEVR---FLHRHGY-PLKSLPSN 528 (553)
Q Consensus 455 ~~~~~i~l~~-~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i-~L~~Lr---~L~l~~~-~l~~LP~~ 528 (553)
..++.+.+.. .. -..+++..|..+++|+.|+++++ .+..+|. + ++.+|+ +|+++++ .++.+|..
T Consensus 80 ~~L~~L~l~~~n~--l~~i~~~~f~~l~~L~~L~l~~n-------~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~ 149 (239)
T 2xwt_C 80 SKVTHIEIRNTRN--LTYIDPDALKELPLLKFLGIFNT-------GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVN 149 (239)
T ss_dssp TTCCEEEEEEETT--CCEECTTSEECCTTCCEEEEEEE-------CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTT
T ss_pred cCCcEEECCCCCC--eeEcCHHHhCCCCCCCEEeCCCC-------CCccccc-cccccccccccEEECCCCcchhhcCcc
Confidence 3444444443 22 23456667888888999998887 4444665 4 255555 7777777 77777765
Q ss_pred -C-CCCCcc-EEEcCCCCcccCCCC
Q 037613 529 -I-NQKKLV-VIEMPHSNIQQFWDG 550 (553)
Q Consensus 529 -i-~L~~L~-~L~l~~s~i~~lp~~ 550 (553)
| ++.+|+ +|+|++++++.+|.+
T Consensus 150 ~~~~l~~L~~~L~l~~n~l~~i~~~ 174 (239)
T 2xwt_C 150 AFQGLCNETLTLKLYNNGFTSVQGY 174 (239)
T ss_dssp TTTTTBSSEEEEECCSCCCCEECTT
T ss_pred cccchhcceeEEEcCCCCCcccCHh
Confidence 4 577777 777777777777754
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.69 E-value=4.2e-05 Score=70.24 Aligned_cols=86 Identities=8% Similarity=0.132 Sum_probs=64.8
Q ss_pred CcccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCC-CCCCCCCC-C
Q 037613 454 TKSIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYP-LKSLPSNI-N 530 (553)
Q Consensus 454 ~~~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~-l~~LP~~i-~ 530 (553)
...++.+.+..... ....+..|..+++|+.|+|++|.+.. ..|..++ +.+|++|++++|+ ++.+| .+ +
T Consensus 87 l~~L~~L~l~~n~l--~~~~~~~l~~l~~L~~L~Ls~n~i~~------~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~ 157 (197)
T 4ezg_A 87 LSNLERLRIMGKDV--TSDKIPNLSGLTSLTLLDISHSAHDD------SILTKINTLPKVNSIDLSYNGAITDIM-PLKT 157 (197)
T ss_dssp CTTCCEEEEECTTC--BGGGSCCCTTCTTCCEEECCSSBCBG------GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGG
T ss_pred CCCCCEEEeECCcc--CcccChhhcCCCCCCEEEecCCccCc------HhHHHHhhCCCCCEEEccCCCCccccH-hhcC
Confidence 34555555554432 12234558899999999999984332 2455554 8999999999998 99998 56 7
Q ss_pred CCCccEEEcCCCCcccCC
Q 037613 531 QKKLVVIEMPHSNIQQFW 548 (553)
Q Consensus 531 L~~L~~L~l~~s~i~~lp 548 (553)
+.+|++|+|++|.+..+|
T Consensus 158 l~~L~~L~l~~n~i~~~~ 175 (197)
T 4ezg_A 158 LPELKSLNIQFDGVHDYR 175 (197)
T ss_dssp CSSCCEEECTTBCCCCCT
T ss_pred CCCCCEEECCCCCCcChH
Confidence 999999999999998876
No 110
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.69 E-value=8.3e-05 Score=72.50 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=42.1
Q ss_pred CCCCCCCCccchhhhHhhHHhhccc---------------cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 157 LFPHNNDRLVGVESRVVAIESLLSA---------------APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 157 ~~~~~~~~~vGr~~~~~~l~~~L~~---------------~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
.+....+.++|++..+++|...+.. .+.+.|+|++|+|||+||+++++....
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~ 77 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA 77 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3445567799999999998887632 567999999999999999999987643
No 111
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.68 E-value=4.2e-05 Score=75.37 Aligned_cols=68 Identities=18% Similarity=0.285 Sum_probs=45.4
Q ss_pred ChhHhhcCCCCcEEEeecccCCCCCCCcccc-CCCCC-CCCeeEEEecCCCCCCCCC-CC-CCCCccEEEcCCCCcccC
Q 037613 473 NPNTFVKMHKLRFLKFYNSINGDNRCKVSYL-QESPG-FAEVRFLHRHGYPLKSLPS-NI-NQKKLVVIEMPHSNIQQF 547 (553)
Q Consensus 473 ~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~l-p~~i~-L~~Lr~L~l~~~~l~~LP~-~i-~L~~L~~L~l~~s~i~~l 547 (553)
.+..|..+++|+.|+|+++ .+..+ |..++ +.+|++|++++|.+..+|. .+ ++.+|++|+|+++++...
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n-------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQC-------QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp ECSCCTTCTTCCEEECTTS-------CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred chhHHhhCcCCCEEECCCC-------CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 3445666777777777766 34445 44554 7777777777777777766 34 577777777777777654
No 112
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.68 E-value=3.6e-05 Score=82.45 Aligned_cols=69 Identities=20% Similarity=0.395 Sum_probs=31.6
Q ss_pred ChhHhhcCCCCcEEEeecccCCCCCCCccccCCC-CC-CCCeeEEEecCCCCCCC--CCCC-CCCCccEEEcCCCC-ccc
Q 037613 473 NPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQES-PG-FAEVRFLHRHGYPLKSL--PSNI-NQKKLVVIEMPHSN-IQQ 546 (553)
Q Consensus 473 ~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~-i~-L~~Lr~L~l~~~~l~~L--P~~i-~L~~L~~L~l~~s~-i~~ 546 (553)
++..|.++++|++|+|+++ .+..+|.. ++ |.+|++|++++|.++.+ |..+ ++.+|++|++++++ +..
T Consensus 66 ~~~~~~~l~~L~~L~Ls~n-------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 138 (549)
T 2z81_A 66 EGDAFYSLGSLEHLDLSDN-------HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE 138 (549)
T ss_dssp CTTTTTTCTTCCEEECTTS-------CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred ChhhccccccCCEEECCCC-------ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccc
Confidence 3344445555555555544 22223332 32 55555555555555432 3344 45555555555444 344
Q ss_pred CC
Q 037613 547 FW 548 (553)
Q Consensus 547 lp 548 (553)
+|
T Consensus 139 ~~ 140 (549)
T 2z81_A 139 IR 140 (549)
T ss_dssp EC
T ss_pred cC
Confidence 43
No 113
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.67 E-value=5.9e-05 Score=74.70 Aligned_cols=87 Identities=14% Similarity=0.104 Sum_probs=53.9
Q ss_pred cccccccccCCCcccc-ccChhHhhcCCCCcEEEeecccCCCCCCCccccC--CCCC-CCCeeEEEecCCCCCCCCCCCC
Q 037613 455 KSIEGICLDMSKANEI-RLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQ--ESPG-FAEVRFLHRHGYPLKSLPSNIN 530 (553)
Q Consensus 455 ~~~~~i~l~~~~~~~~-~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp--~~i~-L~~Lr~L~l~~~~l~~LP~~i~ 530 (553)
..++.+.+........ .+....|..+++|+.|+|+++.+.+ .+ ..+. +.+|++|++++|.++.+|..+.
T Consensus 201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-------~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~ 273 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD-------AAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP 273 (312)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS-------SCCCSCCCCCTTCCEEECTTSCCSSCCSSCC
T ss_pred CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc-------ccchhhhhhcCCCCEEECCCCccChhhhhcc
Confidence 4445444444332211 2333456677778888887774333 22 2233 6777888887777777777766
Q ss_pred CCCccEEEcCCCCcccCCC
Q 037613 531 QKKLVVIEMPHSNIQQFWD 549 (553)
Q Consensus 531 L~~L~~L~l~~s~i~~lp~ 549 (553)
.+|++|+|++++|+.+|.
T Consensus 274 -~~L~~L~Ls~N~l~~~p~ 291 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRNPS 291 (312)
T ss_dssp -SEEEEEECCSSCCCSCCC
T ss_pred -CCceEEECCCCCCCCChh
Confidence 777778887777777764
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.65 E-value=8e-05 Score=71.86 Aligned_cols=81 Identities=17% Similarity=0.302 Sum_probs=63.0
Q ss_pred cccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCCCCCCeeEEEecCCCCCCCCCCC-CCCC
Q 037613 455 KSIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPGFAEVRFLHRHGYPLKSLPSNI-NQKK 533 (553)
Q Consensus 455 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~L~~Lr~L~l~~~~l~~LP~~i-~L~~ 533 (553)
..++.+.+..... ..+++ |..+++|+.|+|+++ .+..+|...+ .+|++|++++|.++.+|. + ++.+
T Consensus 63 ~~L~~L~L~~N~i--~~~~~--l~~l~~L~~L~L~~N-------~l~~l~~~~~-~~L~~L~L~~N~l~~~~~-l~~l~~ 129 (263)
T 1xeu_A 63 TNLKELHLSHNQI--SDLSP--LKDLTKLEELSVNRN-------RLKNLNGIPS-ACLSRLFLDNNELRDTDS-LIHLKN 129 (263)
T ss_dssp TTCCEEECCSSCC--CCCGG--GTTCSSCCEEECCSS-------CCSCCTTCCC-SSCCEEECCSSCCSBSGG-GTTCTT
T ss_pred CCCCEEECCCCcc--CCChh--hccCCCCCEEECCCC-------ccCCcCcccc-CcccEEEccCCccCCChh-hcCccc
Confidence 4455555544432 22333 899999999999998 4555776556 899999999999999975 6 8999
Q ss_pred ccEEEcCCCCcccCC
Q 037613 534 LVVIEMPHSNIQQFW 548 (553)
Q Consensus 534 L~~L~l~~s~i~~lp 548 (553)
|++|+|++++++.+|
T Consensus 130 L~~L~Ls~N~i~~~~ 144 (263)
T 1xeu_A 130 LEILSIRNNKLKSIV 144 (263)
T ss_dssp CCEEECTTSCCCBCG
T ss_pred ccEEECCCCcCCCCh
Confidence 999999999998886
No 115
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.65 E-value=0.0001 Score=66.57 Aligned_cols=40 Identities=28% Similarity=0.378 Sum_probs=29.5
Q ss_pred hhhhHhhHHhhccc-----cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 168 VESRVVAIESLLSA-----APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 168 r~~~~~~l~~~L~~-----~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
....++.+..++.. ...+.|+|++|+||||||+.+++.+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 33344444444433 57899999999999999999999764
No 116
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.65 E-value=3.2e-05 Score=77.96 Aligned_cols=63 Identities=22% Similarity=0.345 Sum_probs=29.1
Q ss_pred ChhHhhcCCCCcEEEeecccCCCCCCCccccCCC-CC-CCCeeEEEecCCCCCCCCC--CC-CCCCccEEEcCCC
Q 037613 473 NPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQES-PG-FAEVRFLHRHGYPLKSLPS--NI-NQKKLVVIEMPHS 542 (553)
Q Consensus 473 ~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~-i~-L~~Lr~L~l~~~~l~~LP~--~i-~L~~L~~L~l~~s 542 (553)
.+..|.++++|+.|+|+++ .+..+|.. ++ +.+|++|++++|+++.+|. .+ ++.+|++|+++++
T Consensus 92 ~~~~~~~l~~L~~L~Ls~n-------~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 92 EEDSFSSLGSLEHLDLSYN-------YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp CTTTTTTCTTCCEEECCSS-------CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEES
T ss_pred CHhhcCCCCCCCEEECCCC-------cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCC
Confidence 3344455555555555544 23334433 22 4455555555555555544 23 3455555555444
No 117
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.65 E-value=5.3e-05 Score=74.95 Aligned_cols=50 Identities=26% Similarity=0.358 Sum_probs=42.3
Q ss_pred CCCCCCCCccchhhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 157 LFPHNNDRLVGVESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 157 ~~~~~~~~~vGr~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..|.....++|++..++.+..++.. .+.+.++|++|+|||++|+.+++.+
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 11 YRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp TSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 3444556799999999999999876 3459999999999999999999876
No 118
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.65 E-value=4.8e-05 Score=82.56 Aligned_cols=70 Identities=17% Similarity=0.242 Sum_probs=48.2
Q ss_pred ccChhHhhcCCCCcEEEeecccCCCCCCCcccc-CCCCC-CCCeeEEEecCCCCCCC-CCCC-CCCCccEEEcCCCCccc
Q 037613 471 RLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYL-QESPG-FAEVRFLHRHGYPLKSL-PSNI-NQKKLVVIEMPHSNIQQ 546 (553)
Q Consensus 471 ~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~l-p~~i~-L~~Lr~L~l~~~~l~~L-P~~i-~L~~L~~L~l~~s~i~~ 546 (553)
.+.+..|.++++|+.|+|+++ .+..+ |..++ +.+|++|++++|.++.+ |..+ ++.+|++|+|+++++..
T Consensus 71 ~~~~~~~~~l~~L~~L~Ls~n-------~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~ 143 (606)
T 3t6q_A 71 WIHEDTFQSQHRLDTLVLTAN-------PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS 143 (606)
T ss_dssp EECTTTTTTCTTCCEEECTTC-------CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC
T ss_pred eeChhhccCccccCeeeCCCC-------cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccc
Confidence 455666777777777777766 33334 44554 77888888887777777 4556 67888888888877776
Q ss_pred C
Q 037613 547 F 547 (553)
Q Consensus 547 l 547 (553)
+
T Consensus 144 ~ 144 (606)
T 3t6q_A 144 I 144 (606)
T ss_dssp C
T ss_pred c
Confidence 6
No 119
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.64 E-value=7.2e-05 Score=81.85 Aligned_cols=87 Identities=14% Similarity=0.156 Sum_probs=60.0
Q ss_pred ccccccccCCCccccccChhHh-hcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecC------CC-CCCCC
Q 037613 456 SIEGICLDMSKANEIRLNPNTF-VKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHG------YP-LKSLP 526 (553)
Q Consensus 456 ~~~~i~l~~~~~~~~~~~~~~~-~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~------~~-l~~LP 526 (553)
.++.+.+..... ..++...+ ..+++|+.|+|++| .+..+|..++ +.+|++|++++ +. ...+|
T Consensus 489 ~L~~L~Ls~N~l--~~lp~~~~~~~l~~L~~L~Ls~N-------~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 489 LLTSIDLRFNKL--TKLSDDFRATTLPYLVGIDLSYN-------SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp GCCEEECCSSCC--CBCCGGGSTTTCTTCCEEECCSS-------CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred CccEEECcCCcC--CccChhhhhccCCCcCEEECCCC-------CCCCcChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence 444444443322 24444443 48888888888887 4555887775 88888888854 33 56788
Q ss_pred CCC-CCCCccEEEcCCCCcccCCCCC
Q 037613 527 SNI-NQKKLVVIEMPHSNIQQFWDGT 551 (553)
Q Consensus 527 ~~i-~L~~L~~L~l~~s~i~~lp~~~ 551 (553)
..+ ++.+|++|+|+++++..+|..+
T Consensus 560 ~~l~~l~~L~~L~Ls~N~l~~ip~~~ 585 (636)
T 4eco_A 560 EGITLCPSLTQLQIGSNDIRKVNEKI 585 (636)
T ss_dssp TTGGGCSSCCEEECCSSCCCBCCSCC
T ss_pred HHHhcCCCCCEEECCCCcCCccCHhH
Confidence 888 6888888888888888888754
No 120
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.63 E-value=7.8e-05 Score=79.80 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=27.1
Q ss_pred hHhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCCCCC
Q 037613 475 NTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSLPSN 528 (553)
Q Consensus 475 ~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~LP~~ 528 (553)
..|..+++|+.|+|++| .+..+|..++ +.+|++|++++|.++.+|..
T Consensus 381 ~~~~~l~~L~~L~Ls~N-------~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~ 428 (549)
T 2z81_A 381 EILLTLKNLTSLDISRN-------TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTC 428 (549)
T ss_dssp HHGGGCTTCCEEECTTC-------CCCCCCSCCCCCTTCCEEECTTSCCSCCCTT
T ss_pred hhhhcCCCCCEEECCCC-------CCccCChhhcccccccEEECCCCCcccccch
Confidence 34566666666666666 3444565554 55666666666655555543
No 121
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.62 E-value=0.00014 Score=71.26 Aligned_cols=51 Identities=25% Similarity=0.253 Sum_probs=41.6
Q ss_pred CCCCCCCCccchhhhHhhHHhhccc--------------cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 157 LFPHNNDRLVGVESRVVAIESLLSA--------------APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 157 ~~~~~~~~~vGr~~~~~~l~~~L~~--------------~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.++.....++|.+..++.+.+.+.. .+.+.|+|++|+||||+|+++++...
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 3445567899999999988887621 46899999999999999999998764
No 122
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.62 E-value=4e-05 Score=81.57 Aligned_cols=82 Identities=10% Similarity=0.185 Sum_probs=65.6
Q ss_pred cccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCCCCCCeeEEEecCCCCCC--CCCCC-CC
Q 037613 455 KSIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPGFAEVRFLHRHGYPLKS--LPSNI-NQ 531 (553)
Q Consensus 455 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~L~~Lr~L~l~~~~l~~--LP~~i-~L 531 (553)
..++.+.+... .-..+.+..|.++++|++|+|+++ .+..+|.. ++.+|++|++++|.++. +|..+ ++
T Consensus 45 ~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~N-------~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l 114 (520)
T 2z7x_B 45 SKLRILIISHN--RIQYLDISVFKFNQELEYLDLSHN-------KLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNM 114 (520)
T ss_dssp TTCCEEECCSS--CCCEEEGGGGTTCTTCCEEECCSS-------CCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGC
T ss_pred ccccEEecCCC--ccCCcChHHhhcccCCCEEecCCC-------ceeecCcc-ccCCccEEeccCCccccccchhhhccC
Confidence 44554444433 334556788999999999999998 56678877 89999999999999987 56888 79
Q ss_pred CCccEEEcCCCCccc
Q 037613 532 KKLVVIEMPHSNIQQ 546 (553)
Q Consensus 532 ~~L~~L~l~~s~i~~ 546 (553)
.+|++|+|+++.+..
T Consensus 115 ~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 115 SQLKFLGLSTTHLEK 129 (520)
T ss_dssp TTCCEEEEEESSCCG
T ss_pred CcceEEEecCcccch
Confidence 999999999988753
No 123
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.61 E-value=7e-05 Score=74.08 Aligned_cols=64 Identities=11% Similarity=0.227 Sum_probs=48.3
Q ss_pred hhcCCCCcEEEeecccCCCCCCCccccCCCCCCCCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCcccCC
Q 037613 477 FVKMHKLRFLKFYNSINGDNRCKVSYLQESPGFAEVRFLHRHGYPLKSLPSNI-NQKKLVVIEMPHSNIQQFW 548 (553)
Q Consensus 477 ~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~L~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~~s~i~~lp 548 (553)
|..+++|+.|+|+++ .+..+|...++.+|++|++++|.++.+|. + ++.+|++|+|+++.+..+|
T Consensus 81 ~~~l~~L~~L~L~~n-------~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~ 145 (308)
T 1h6u_A 81 LKNLTKITELELSGN-------PLKNVSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNIS 145 (308)
T ss_dssp GTTCCSCCEEECCSC-------CCSCCGGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred HccCCCCCEEEccCC-------cCCCchhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCc
Confidence 777888888888877 34445532248888888888888888876 5 6888888888888887765
No 124
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.61 E-value=5.3e-05 Score=84.84 Aligned_cols=83 Identities=18% Similarity=0.212 Sum_probs=64.7
Q ss_pred ccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCC-CCCCCC-CCCCccEEE
Q 037613 462 LDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLK-SLPSNI-NQKKLVVIE 538 (553)
Q Consensus 462 l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~-~LP~~i-~L~~L~~L~ 538 (553)
++.+.+.-....+..|..++.|++|+|++|.+.+ .+|+.++ |++|++|+|++|++. .+|..+ +|.+|++||
T Consensus 637 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g------~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG------SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp EECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS------CCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred EECcCCcccccCCHHHhccccCCEEeCcCCccCC------CCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 4444443333456678899999999999986554 5888886 999999999999977 788888 799999999
Q ss_pred cCCCCcc-cCCCC
Q 037613 539 MPHSNIQ-QFWDG 550 (553)
Q Consensus 539 l~~s~i~-~lp~~ 550 (553)
|+++++. .+|.+
T Consensus 711 ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 711 LSNNNLSGPIPEM 723 (768)
T ss_dssp CCSSEEEEECCSS
T ss_pred CcCCcccccCCCc
Confidence 9999875 46665
No 125
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.61 E-value=7.1e-05 Score=74.03 Aligned_cols=84 Identities=7% Similarity=0.209 Sum_probs=63.5
Q ss_pred CcccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCCCCCCeeEEEecCCCCCCCCCCC-CCC
Q 037613 454 TKSIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPGFAEVRFLHRHGYPLKSLPSNI-NQK 532 (553)
Q Consensus 454 ~~~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~L~~Lr~L~l~~~~l~~LP~~i-~L~ 532 (553)
...++.+.+....... + ..|..+++|+.|+|++| .+..+|..-++.+|++|++++|.++.+|. + ++.
T Consensus 84 l~~L~~L~L~~n~l~~--~--~~~~~l~~L~~L~l~~n-------~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~ 151 (308)
T 1h6u_A 84 LTKITELELSGNPLKN--V--SAIAGLQSIKTLDLTST-------QITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLT 151 (308)
T ss_dssp CCSCCEEECCSCCCSC--C--GGGTTCTTCCEEECTTS-------CCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCT
T ss_pred CCCCCEEEccCCcCCC--c--hhhcCCCCCCEEECCCC-------CCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCC
Confidence 3455555555443322 2 35888999999999998 45556652248999999999999999988 6 799
Q ss_pred CccEEEcCCCCcccCCC
Q 037613 533 KLVVIEMPHSNIQQFWD 549 (553)
Q Consensus 533 ~L~~L~l~~s~i~~lp~ 549 (553)
+|++|+|+++++..+|.
T Consensus 152 ~L~~L~l~~n~l~~~~~ 168 (308)
T 1h6u_A 152 NLQYLSIGNAQVSDLTP 168 (308)
T ss_dssp TCCEEECCSSCCCCCGG
T ss_pred CccEEEccCCcCCCChh
Confidence 99999999999888764
No 126
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.61 E-value=5.8e-05 Score=74.61 Aligned_cols=88 Identities=11% Similarity=0.086 Sum_probs=63.2
Q ss_pred CcccccccccCCCccccc-cChhHhhcCCCCcEEEeecccCCCCCCCcccc-CCCCC-C---CCeeEEEecCCCCCCCCC
Q 037613 454 TKSIEGICLDMSKANEIR-LNPNTFVKMHKLRFLKFYNSINGDNRCKVSYL-QESPG-F---AEVRFLHRHGYPLKSLPS 527 (553)
Q Consensus 454 ~~~~~~i~l~~~~~~~~~-~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~l-p~~i~-L---~~Lr~L~l~~~~l~~LP~ 527 (553)
...++.+.+......... .....+..+++|+.|+|++|.+.+ + |..++ + .+|++|++++|.++.+|.
T Consensus 196 l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~-------~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~ 268 (310)
T 4glp_A 196 FPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRA-------TVNPSAPRCMWSSALNSLNLSFAGLEQVPK 268 (310)
T ss_dssp SCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCC-------CCCSCCSSCCCCTTCCCEECCSSCCCSCCS
T ss_pred CCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCc-------cchhhHHhccCcCcCCEEECCCCCCCchhh
Confidence 345555555544332111 111246889999999999985444 4 66554 4 699999999999999999
Q ss_pred CCCCCCccEEEcCCCCcccCCC
Q 037613 528 NINQKKLVVIEMPHSNIQQFWD 549 (553)
Q Consensus 528 ~i~L~~L~~L~l~~s~i~~lp~ 549 (553)
.+. .+|++|+|++++|..+|.
T Consensus 269 ~~~-~~L~~L~Ls~N~l~~~~~ 289 (310)
T 4glp_A 269 GLP-AKLRVLDLSSNRLNRAPQ 289 (310)
T ss_dssp CCC-SCCSCEECCSCCCCSCCC
T ss_pred hhc-CCCCEEECCCCcCCCCch
Confidence 885 799999999999998764
No 127
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.61 E-value=7.2e-05 Score=82.39 Aligned_cols=86 Identities=19% Similarity=0.201 Sum_probs=68.5
Q ss_pred cccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCcccc-CCCCC-CCCeeEEEecCCCCCCCCCC-C-C
Q 037613 455 KSIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYL-QESPG-FAEVRFLHRHGYPLKSLPSN-I-N 530 (553)
Q Consensus 455 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~l-p~~i~-L~~Lr~L~l~~~~l~~LP~~-i-~ 530 (553)
..++.+.+... .-..+++..|.++++|++|+|+++. +..+ |..++ |.+|++|++++|.++.+|.. | +
T Consensus 25 ~~l~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 25 TNITVLNLTHN--QLRRLPAANFTRYSQLTSLDVGFNT-------ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp TTCSEEECCSS--CCCCCCGGGGGGGTTCSEEECCSSC-------CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCcEEECCCC--CCCCcCHHHHhCCCcCcEEECCCCc-------cCccCHHHHhcccCcCEEECCCCccCccChhhhcc
Confidence 34555555443 3345677789999999999999984 4445 44555 99999999999999999984 7 7
Q ss_pred CCCccEEEcCCCCcccCCC
Q 037613 531 QKKLVVIEMPHSNIQQFWD 549 (553)
Q Consensus 531 L~~L~~L~l~~s~i~~lp~ 549 (553)
+.+|++|+|+++++..+|.
T Consensus 96 l~~L~~L~L~~n~l~~~~~ 114 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKN 114 (680)
T ss_dssp CTTCSEEECCSSCCCCCCS
T ss_pred CCCCCEEECCCCccCccCh
Confidence 9999999999999999874
No 128
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.60 E-value=7.6e-05 Score=77.99 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=13.4
Q ss_pred ccChhHhhcCCCCcEEEeecc
Q 037613 471 RLNPNTFVKMHKLRFLKFYNS 491 (553)
Q Consensus 471 ~~~~~~~~~~~~LrvL~l~~~ 491 (553)
.+++..|..+++|+.|+|+++
T Consensus 137 ~~~~~~~~~l~~L~~L~L~~N 157 (452)
T 3zyi_A 137 VIPSGAFEYLSKLRELWLRNN 157 (452)
T ss_dssp BCCTTTSSSCTTCCEEECCSC
T ss_pred ccChhhhcccCCCCEEECCCC
Confidence 445555666677777777665
No 129
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.59 E-value=8.3e-05 Score=77.42 Aligned_cols=42 Identities=19% Similarity=0.278 Sum_probs=25.9
Q ss_pred CCCeeEEEecCCCCCCCCCC-C-CCCCccEEEcCCCCcccCCCC
Q 037613 509 FAEVRFLHRHGYPLKSLPSN-I-NQKKLVVIEMPHSNIQQFWDG 550 (553)
Q Consensus 509 L~~Lr~L~l~~~~l~~LP~~-i-~L~~L~~L~l~~s~i~~lp~~ 550 (553)
+.+|++|+++++.++.+|.. | ++.+|++|+|+++++..+|.+
T Consensus 230 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 273 (440)
T 3zyj_A 230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD 273 (440)
T ss_dssp CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTT
T ss_pred CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChh
Confidence 56666666666666555443 3 466777777777766666653
No 130
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.58 E-value=4.7e-05 Score=86.24 Aligned_cols=70 Identities=19% Similarity=0.298 Sum_probs=44.3
Q ss_pred ccChhHhhcCCCCcEEEeecccCCCCCCCcccc-CCCCC-CCCeeEEEecCCCCCC-CCCC--C-CCCCccEEEcCCCCc
Q 037613 471 RLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYL-QESPG-FAEVRFLHRHGYPLKS-LPSN--I-NQKKLVVIEMPHSNI 544 (553)
Q Consensus 471 ~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~l-p~~i~-L~~Lr~L~l~~~~l~~-LP~~--i-~L~~L~~L~l~~s~i 544 (553)
.+++..|.++++||+|+|++| .+..+ |..++ |.+|++|+|++|.+.. +|.. + +|.+|++|+|+++.+
T Consensus 63 ~i~~~~f~~L~~L~~L~Ls~N-------~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l 135 (844)
T 3j0a_A 63 TIDKEAFRNLPNLRILDLGSS-------KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135 (844)
T ss_dssp EECTTTTSSCTTCCEEECTTC-------CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCC
T ss_pred ccCHHHhcCCCCCCEEECCCC-------cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcc
Confidence 444566667777777777666 33334 55554 7777777777777654 4443 5 577777777777776
Q ss_pred ccC
Q 037613 545 QQF 547 (553)
Q Consensus 545 ~~l 547 (553)
..+
T Consensus 136 ~~~ 138 (844)
T 3j0a_A 136 RSL 138 (844)
T ss_dssp CCC
T ss_pred ccc
Confidence 655
No 131
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.56 E-value=0.0001 Score=83.06 Aligned_cols=74 Identities=12% Similarity=0.162 Sum_probs=54.4
Q ss_pred ccChhHh-hcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecC------CC-CCCCCCCC-CCCCccEEEcC
Q 037613 471 RLNPNTF-VKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHG------YP-LKSLPSNI-NQKKLVVIEMP 540 (553)
Q Consensus 471 ~~~~~~~-~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~------~~-l~~LP~~i-~L~~L~~L~l~ 540 (553)
.++...+ ..+++|+.|+|++| .+..+|..++ |.+|+.|++++ |. ...+|..| ++.+|++|+|+
T Consensus 742 ~lp~~l~~~~l~~L~~L~Ls~N-------~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls 814 (876)
T 4ecn_A 742 SLSDDFRATTLPYLSNMDVSYN-------CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814 (876)
T ss_dssp CCCGGGSTTTCTTCCEEECCSS-------CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred cchHHhhhccCCCcCEEEeCCC-------CCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECC
Confidence 3443333 47888888888887 4445787775 88888888866 43 56778888 68888888888
Q ss_pred CCCcccCCCCC
Q 037613 541 HSNIQQFWDGT 551 (553)
Q Consensus 541 ~s~i~~lp~~~ 551 (553)
+|++..+|.++
T Consensus 815 ~N~L~~Ip~~l 825 (876)
T 4ecn_A 815 SNDIRKVDEKL 825 (876)
T ss_dssp SSCCCBCCSCC
T ss_pred CCCCCccCHhh
Confidence 88888888764
No 132
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.56 E-value=0.00011 Score=72.10 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=18.1
Q ss_pred CCCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCccc
Q 037613 509 FAEVRFLHRHGYPLKSLPSNI-NQKKLVVIEMPHSNIQQ 546 (553)
Q Consensus 509 L~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~~s~i~~ 546 (553)
+.+|++|++++|.++.+|. + ++.+|++|+|+++.+..
T Consensus 177 l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 177 LTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred CCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccC
Confidence 4455555555555555443 3 45555555555444443
No 133
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.55 E-value=9.7e-05 Score=80.13 Aligned_cols=71 Identities=15% Similarity=0.187 Sum_probs=43.0
Q ss_pred ccChhHhhcCCCCcEEEeecccCCCCCCCcccc-CCCCC-CCCeeEEEecCCCCCCC--CCCCCCCCccEEEcCCCCccc
Q 037613 471 RLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYL-QESPG-FAEVRFLHRHGYPLKSL--PSNINQKKLVVIEMPHSNIQQ 546 (553)
Q Consensus 471 ~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~l-p~~i~-L~~Lr~L~l~~~~l~~L--P~~i~L~~L~~L~l~~s~i~~ 546 (553)
.+.+..|.++++|+.|+|+++ .+..+ |..++ +.+|++|++++|.+..+ |..+.+.+|++|+|+++.+..
T Consensus 95 ~~~~~~~~~l~~L~~L~L~~n-------~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 167 (606)
T 3t6q_A 95 FMAETALSGPKALKHLFFIQT-------GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167 (606)
T ss_dssp EECTTTTSSCTTCCEEECTTS-------CCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE
T ss_pred ccChhhhcccccccEeecccc-------CcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc
Confidence 344556666777777777666 33334 33343 66777777777766665 333366677777777666665
Q ss_pred CC
Q 037613 547 FW 548 (553)
Q Consensus 547 lp 548 (553)
++
T Consensus 168 ~~ 169 (606)
T 3t6q_A 168 LS 169 (606)
T ss_dssp EC
T ss_pred cC
Confidence 53
No 134
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.55 E-value=9.3e-05 Score=72.53 Aligned_cols=65 Identities=12% Similarity=0.193 Sum_probs=49.9
Q ss_pred hhcCCCCcEEEeecccCCCCCCCccccCCCCCCCCeeEEEecCCCCCCCCCCCCCCCccEEEcCCCCcccCC
Q 037613 477 FVKMHKLRFLKFYNSINGDNRCKVSYLQESPGFAEVRFLHRHGYPLKSLPSNINQKKLVVIEMPHSNIQQFW 548 (553)
Q Consensus 477 ~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~L~~Lr~L~l~~~~l~~LP~~i~L~~L~~L~l~~s~i~~lp 548 (553)
+.++++|+.|+|+++ .+..+|..-++.+|++|++++|.++.+|.--++.+|++|+|+++++..++
T Consensus 86 l~~l~~L~~L~l~~n-------~l~~~~~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~ 150 (291)
T 1h6t_A 86 LANLKNLGWLFLDEN-------KVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT 150 (291)
T ss_dssp GTTCTTCCEEECCSS-------CCCCGGGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred cccCCCCCEEECCCC-------cCCCChhhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcch
Confidence 788888888888887 44446652248889999998888888864337888999999888887764
No 135
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.54 E-value=0.00023 Score=70.13 Aligned_cols=48 Identities=21% Similarity=0.298 Sum_probs=38.4
Q ss_pred CCCCCccchhhhHhhHHhhccc---------------cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 160 HNNDRLVGVESRVVAIESLLSA---------------APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 160 ~~~~~~vGr~~~~~~l~~~L~~---------------~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.....++|.+..++++.+.+.. .+.+.|+|++|+|||+||+++++...
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 3445688888888877776531 56799999999999999999999764
No 136
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.54 E-value=0.00026 Score=71.48 Aligned_cols=67 Identities=25% Similarity=0.346 Sum_probs=51.1
Q ss_pred chhhhHHHHHHHHHhhhcCCCCCCCCCccchhhhHhhHHhhccc--------------cCEEEEeecCCCchHHHHHHHH
Q 037613 138 PESELTEEIVNHILKRLAELFPHNNDRLVGVESRVVAIESLLSA--------------APLLAIWGIGGIGKTTIARATF 203 (553)
Q Consensus 138 ~e~~~i~~iv~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~--------------~~vi~I~G~gGiGKTtLA~~v~ 203 (553)
.+...++.+...+... .++.....++|.+..++.|.+.+.. .+.+.|+|++|+|||+||++++
T Consensus 62 ~~~~~~~~i~~~i~~~---~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia 138 (357)
T 3d8b_A 62 LEPKMIELIMNEIMDH---GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIA 138 (357)
T ss_dssp SCHHHHHHHHHHTBCC---SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHH
T ss_pred CChHHHHHHHhhcccC---CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHH
Confidence 3566666666665443 3345557799999999998887631 5789999999999999999999
Q ss_pred hhhc
Q 037613 204 DKIS 207 (553)
Q Consensus 204 ~~~~ 207 (553)
+...
T Consensus 139 ~~~~ 142 (357)
T 3d8b_A 139 SQSG 142 (357)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 8753
No 137
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.53 E-value=6.8e-05 Score=80.70 Aligned_cols=82 Identities=17% Similarity=0.270 Sum_probs=66.6
Q ss_pred cccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCCCCCCeeEEEecCCCCCCCC--CCC-CC
Q 037613 455 KSIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPGFAEVRFLHRHGYPLKSLP--SNI-NQ 531 (553)
Q Consensus 455 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~L~~Lr~L~l~~~~l~~LP--~~i-~L 531 (553)
..++.+.+... .-..+.+..|.++++|++|+|+++ .+..+|.. +|.+|++|++++|.++.+| ..| ++
T Consensus 76 ~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~Ls~N-------~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l 145 (562)
T 3a79_B 76 SELRVLRLSHN--RIRSLDFHVFLFNQDLEYLDVSHN-------RLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNL 145 (562)
T ss_dssp TTCCEEECCSC--CCCEECTTTTTTCTTCCEEECTTS-------CCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGC
T ss_pred CCccEEECCCC--CCCcCCHHHhCCCCCCCEEECCCC-------cCCccCcc-ccccCCEEECCCCCccccCchHhhccc
Confidence 44555545443 344567788999999999999998 66679977 8999999999999999876 678 79
Q ss_pred CCccEEEcCCCCccc
Q 037613 532 KKLVVIEMPHSNIQQ 546 (553)
Q Consensus 532 ~~L~~L~l~~s~i~~ 546 (553)
.+|++|+|+++++..
T Consensus 146 ~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 146 TKLTFLGLSAAKFRQ 160 (562)
T ss_dssp TTCCEEEEECSBCCT
T ss_pred CcccEEecCCCcccc
Confidence 999999999998764
No 138
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.52 E-value=0.0001 Score=77.34 Aligned_cols=63 Identities=13% Similarity=0.188 Sum_probs=36.5
Q ss_pred hhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCcccCC
Q 037613 477 FVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSLPSNI-NQKKLVVIEMPHSNIQQFW 548 (553)
Q Consensus 477 ~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~~s~i~~lp 548 (553)
|.++++|+.|+++++. +..+|. ++ +.+|++|++++|.++.+|. + ++.+|++|+|+++.+..+|
T Consensus 86 ~~~l~~L~~L~l~~n~-------l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~ 150 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQ-------IADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDIS 150 (466)
T ss_dssp GTTCTTCCEEECCSSC-------CCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCG
T ss_pred hhccccCCEEECCCCc-------cccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCCh
Confidence 5556666666666552 333444 43 6666666666666666665 4 5666666666666655554
No 139
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.52 E-value=0.00012 Score=73.34 Aligned_cols=58 Identities=14% Similarity=0.210 Sum_probs=35.4
Q ss_pred hhcCCCCcEEEeecccCCCCCCCccccCCCCCCCCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCC
Q 037613 477 FVKMHKLRFLKFYNSINGDNRCKVSYLQESPGFAEVRFLHRHGYPLKSLPSNI-NQKKLVVIEMPHS 542 (553)
Q Consensus 477 ~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~L~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~~s 542 (553)
|..+++|+.|++++| .+..+|..-++.+|++|++++|.+..+|. + ++.+|++|++++|
T Consensus 84 ~~~l~~L~~L~L~~n-------~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n 142 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTN-------KITDISALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGAN 142 (347)
T ss_dssp GTTCTTCCEEECCSS-------CCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTC
T ss_pred hhcCCcCCEEEccCC-------cccCchHHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCC
Confidence 566666666666665 33334432236666666666666666666 4 5666666666666
No 140
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.52 E-value=5.5e-05 Score=74.53 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=20.2
Q ss_pred CCCeeEEEecCCCCCCCCC-CC-CCCCccEEEcCCCCccc
Q 037613 509 FAEVRFLHRHGYPLKSLPS-NI-NQKKLVVIEMPHSNIQQ 546 (553)
Q Consensus 509 L~~Lr~L~l~~~~l~~LP~-~i-~L~~L~~L~l~~s~i~~ 546 (553)
+.+|++|++++|.+..++. .+ ++.+|++|+|+++.+..
T Consensus 125 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred ccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 5555555555555544332 33 45566666666555543
No 141
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.51 E-value=0.00025 Score=67.96 Aligned_cols=47 Identities=17% Similarity=0.247 Sum_probs=36.4
Q ss_pred CCCccchhhhHhhHHhhccc--------------cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 162 NDRLVGVESRVVAIESLLSA--------------APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~--------------~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
...++|.+..++.+.+++.. .+.+.|+|++|+|||++|+++++....
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~ 65 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV 65 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45678888877777665421 456889999999999999999997643
No 142
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.51 E-value=0.00021 Score=80.80 Aligned_cols=48 Identities=21% Similarity=0.318 Sum_probs=41.3
Q ss_pred CCCCCccchhhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 160 HNNDRLVGVESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 160 ~~~~~~vGr~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
...+.++||+.++.++...|.. ...+.++|.+|+||||||+.+++.+.
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~ 216 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIV 216 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 3446799999999999998876 55689999999999999999999763
No 143
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.50 E-value=0.00015 Score=75.57 Aligned_cols=88 Identities=13% Similarity=0.217 Sum_probs=69.2
Q ss_pred cccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccC-CCCC-CCCeeEEEecCCCCCCC-CCCC-C
Q 037613 455 KSIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQ-ESPG-FAEVRFLHRHGYPLKSL-PSNI-N 530 (553)
Q Consensus 455 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp-~~i~-L~~Lr~L~l~~~~l~~L-P~~i-~ 530 (553)
..++.+.+.. +.-..+.+..|..+++|+.|+|++|. +..++ ..++ +.+|++|++++|.++.+ |..+ +
T Consensus 299 ~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 369 (455)
T 3v47_A 299 TDLEQLTLAQ--NEINKIDDNAFWGLTHLLKLNLSQNF-------LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369 (455)
T ss_dssp TTCCEEECTT--SCCCEECTTTTTTCTTCCEEECCSSC-------CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CCCCEEECCC--CcccccChhHhcCcccCCEEECCCCc-------cCCcChhHhcCcccCCEEECCCCcccccChhhccc
Confidence 3445444443 33445667789999999999999984 44464 5555 99999999999999998 5677 7
Q ss_pred CCCccEEEcCCCCcccCCCCC
Q 037613 531 QKKLVVIEMPHSNIQQFWDGT 551 (553)
Q Consensus 531 L~~L~~L~l~~s~i~~lp~~~ 551 (553)
+.+|++|+|++++++.+|.+.
T Consensus 370 l~~L~~L~L~~N~l~~~~~~~ 390 (455)
T 3v47_A 370 LPNLKELALDTNQLKSVPDGI 390 (455)
T ss_dssp CTTCCEEECCSSCCSCCCTTT
T ss_pred cccccEEECCCCccccCCHhH
Confidence 999999999999999998754
No 144
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.46 E-value=0.00016 Score=75.18 Aligned_cols=51 Identities=25% Similarity=0.447 Sum_probs=41.1
Q ss_pred CCCCCCccchhhhH---hhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 159 PHNNDRLVGVESRV---VAIESLLSA--APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 159 ~~~~~~~vGr~~~~---~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
|.....++|.+..+ ..+...+.. .+.+.|+|++|+||||||+.+++.....
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~ 77 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD 77 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 44557799999888 667766655 5579999999999999999999976543
No 145
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.45 E-value=0.0002 Score=75.00 Aligned_cols=61 Identities=11% Similarity=0.230 Sum_probs=34.2
Q ss_pred hhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCcccCC
Q 037613 477 FVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSLPSNI-NQKKLVVIEMPHSNIQQFW 548 (553)
Q Consensus 477 ~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~~s~i~~lp 548 (553)
+..+++|+.|+++++. +..+| ++ +.+|++|++++|.++.+| + ++.+|++|++++++++.+|
T Consensus 81 ~~~l~~L~~L~Ls~N~-------l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~ 143 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNK-------LTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID 143 (457)
T ss_dssp CTTCTTCSEEECCSSC-------CSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC
T ss_pred cccCCCCCEEECcCCC-------Cceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec
Confidence 4555555555555552 22233 43 566666666666666655 4 5666666666666665553
No 146
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.44 E-value=0.00026 Score=76.98 Aligned_cols=39 Identities=23% Similarity=0.217 Sum_probs=20.3
Q ss_pred CCCCcEEEeecccCCCCCCCccccCCCCCCCCeeEEEecCCCCCCCCC
Q 037613 480 MHKLRFLKFYNSINGDNRCKVSYLQESPGFAEVRFLHRHGYPLKSLPS 527 (553)
Q Consensus 480 ~~~LrvL~l~~~~~~~~~~~l~~lp~~i~L~~Lr~L~l~~~~l~~LP~ 527 (553)
+++|++|+|++| .+..+|. ++.+|++|++++|+++.+|.
T Consensus 80 l~~L~~L~Ls~N-------~l~~lp~--~l~~L~~L~Ls~N~l~~l~~ 118 (622)
T 3g06_A 80 PPELRTLEVSGN-------QLTSLPV--LPPGLLELSIFSNPLTHLPA 118 (622)
T ss_dssp CTTCCEEEECSC-------CCSCCCC--CCTTCCEEEECSCCCCCCCC
T ss_pred CCCCCEEEcCCC-------cCCcCCC--CCCCCCEEECcCCcCCCCCC
Confidence 455666666655 3333443 34555555555555555554
No 147
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.44 E-value=0.00017 Score=76.69 Aligned_cols=49 Identities=27% Similarity=0.419 Sum_probs=42.0
Q ss_pred CCCCCCCccchhhhHhhHHhhccc-------------------cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 158 FPHNNDRLVGVESRVVAIESLLSA-------------------APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 158 ~~~~~~~~vGr~~~~~~l~~~L~~-------------------~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.|.....++|++..++++..++.. .+.+.|+|++|+||||+|+.+++..
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 344557799999999999998864 2689999999999999999999986
No 148
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.43 E-value=0.00015 Score=76.28 Aligned_cols=69 Identities=13% Similarity=0.226 Sum_probs=34.2
Q ss_pred cChhHhhcCCCCcEEEeecccCCCCCCCccccCCCC-C-CCCeeEEEecCCCCCCCCC-CC-CCCCccEEEcCCCCcccC
Q 037613 472 LNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESP-G-FAEVRFLHRHGYPLKSLPS-NI-NQKKLVVIEMPHSNIQQF 547 (553)
Q Consensus 472 ~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i-~-L~~Lr~L~l~~~~l~~LP~-~i-~L~~L~~L~l~~s~i~~l 547 (553)
+.+..|.++++|+.|+|+++ .+..+|... + +.+|++|++++|.+..++. .| ++.+|++|+|+++.+..+
T Consensus 71 ~~~~~~~~l~~L~~L~L~~n-------~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 143 (477)
T 2id5_A 71 VEPGAFNNLFNLRTLGLRSN-------RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI 143 (477)
T ss_dssp ECTTTTTTCTTCCEEECCSS-------CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE
T ss_pred eChhhhhCCccCCEEECCCC-------cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcccee
Confidence 34455556666666666555 333344332 2 5555555555555544432 33 355555555555544443
No 149
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.42 E-value=0.00015 Score=71.74 Aligned_cols=63 Identities=11% Similarity=0.032 Sum_probs=55.3
Q ss_pred hHhhcCCCCcEEEeecccCCCCCCCccccCCCCCCCCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCccc
Q 037613 475 NTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPGFAEVRFLHRHGYPLKSLPSNI-NQKKLVVIEMPHSNIQQ 546 (553)
Q Consensus 475 ~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~L~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~~s~i~~ 546 (553)
..+..+++|+.|+|++| .+..+|..+. .+|++|++++|+++.+|. + .+.+|++|+|+++.+..
T Consensus 247 ~~~~~l~~L~~L~Ls~N-------~l~~ip~~~~-~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 247 PSCDWPSQLNSLNLSFT-------GLKQVPKGLP-AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCCCCCTTCCEEECTTS-------CCSSCCSSCC-SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhhhcCCCCEEECCCC-------ccChhhhhcc-CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 45667899999999998 5666887776 899999999999999998 7 79999999999998864
No 150
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.42 E-value=8.6e-05 Score=83.14 Aligned_cols=72 Identities=14% Similarity=0.313 Sum_probs=62.6
Q ss_pred hhHhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCC-CCCCCC-CCCCccEEEcCCCCcc-cCCC
Q 037613 474 PNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLK-SLPSNI-NQKKLVVIEMPHSNIQ-QFWD 549 (553)
Q Consensus 474 ~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~-~LP~~i-~L~~L~~L~l~~s~i~-~lp~ 549 (553)
+..|..+.+|++|||+++.+.+ .+|..++ |..|++|+|++|.+. .+|..| +|.+|++|||+++++. .+|.
T Consensus 625 ~~~~~~l~~L~~LdLs~N~l~g------~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYNMLSG------YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp CCSCSSSBCCCEEECCSSCCBS------CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred chhhhccccccEEECcCCcccc------cCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh
Confidence 4457788999999999997655 5888897 999999999999987 899999 7999999999999998 6776
Q ss_pred CC
Q 037613 550 GT 551 (553)
Q Consensus 550 ~~ 551 (553)
..
T Consensus 699 ~l 700 (768)
T 3rgz_A 699 AM 700 (768)
T ss_dssp GG
T ss_pred HH
Confidence 53
No 151
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.42 E-value=0.00015 Score=79.23 Aligned_cols=73 Identities=11% Similarity=0.113 Sum_probs=43.3
Q ss_pred ccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCCC--CC-------CeeEEEecCCCCCCCCCCC---CCCCccEEE
Q 037613 471 RLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG--FA-------EVRFLHRHGYPLKSLPSNI---NQKKLVVIE 538 (553)
Q Consensus 471 ~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~--L~-------~Lr~L~l~~~~l~~LP~~i---~L~~L~~L~ 538 (553)
.++...|..+++|+.|+|+++ .+..+|..+. +. +|++|++++|.++.+|..+ .+.+|++|+
T Consensus 447 ~lp~~~~~~l~~L~~L~Ls~N-------~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~ 519 (636)
T 4eco_A 447 KFPKELFSTGSPLSSINLMGN-------MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGID 519 (636)
T ss_dssp SCCTHHHHTTCCCSEEECCSS-------CCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEE
T ss_pred cCCHHHHccCCCCCEEECCCC-------CCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEE
Confidence 456666667777777777766 3334554431 22 6666666666666666554 466666666
Q ss_pred cCCCCcccCCCC
Q 037613 539 MPHSNIQQFWDG 550 (553)
Q Consensus 539 l~~s~i~~lp~~ 550 (553)
|+++++..+|..
T Consensus 520 Ls~N~l~~ip~~ 531 (636)
T 4eco_A 520 LSYNSFSKFPTQ 531 (636)
T ss_dssp CCSSCCSSCCCG
T ss_pred CCCCCCCCcChh
Confidence 666666655543
No 152
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.39 E-value=6.9e-05 Score=74.38 Aligned_cols=75 Identities=7% Similarity=0.023 Sum_probs=60.7
Q ss_pred cccChhHhhcCCCCcEEEeecccCCCCCCCccccC-CCC-C-CCCeeEEEecCCCCCCCCCCCCCCCccEEEcCCCCccc
Q 037613 470 IRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQ-ESP-G-FAEVRFLHRHGYPLKSLPSNINQKKLVVIEMPHSNIQQ 546 (553)
Q Consensus 470 ~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp-~~i-~-L~~Lr~L~l~~~~l~~LP~~i~L~~L~~L~l~~s~i~~ 546 (553)
..+.+..|..+++|+.|+|+++. +..++ ..+ + +.+|++|++++|.++.+|....+.+|++|+|+++++..
T Consensus 133 ~~~~~~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~ 205 (317)
T 3o53_A 133 TMLRDLDEGCRSRVQYLDLKLNE-------IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF 205 (317)
T ss_dssp CSGGGBCTGGGSSEEEEECTTSC-------CCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCE
T ss_pred CCccchhhhccCCCCEEECCCCC-------CCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCc
Confidence 34456678889999999999884 44343 333 3 88999999999999999887789999999999999999
Q ss_pred CCCCC
Q 037613 547 FWDGT 551 (553)
Q Consensus 547 lp~~~ 551 (553)
+|.+.
T Consensus 206 l~~~~ 210 (317)
T 3o53_A 206 MGPEF 210 (317)
T ss_dssp ECGGG
T ss_pred chhhh
Confidence 87653
No 153
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.39 E-value=0.00022 Score=77.30 Aligned_cols=84 Identities=12% Similarity=0.222 Sum_probs=59.5
Q ss_pred CcccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCCCCCCeeEEEecCCCCCCCCCCCCCCC
Q 037613 454 TKSIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPGFAEVRFLHRHGYPLKSLPSNINQKK 533 (553)
Q Consensus 454 ~~~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~L~~Lr~L~l~~~~l~~LP~~i~L~~ 533 (553)
...++.+.+..+.. ..+++ |..|++|+.|+|++| .+..+|...+|.+|++|+|++|.+..+|....|.+
T Consensus 64 l~~L~~L~Ls~N~l--~~~~~--l~~l~~L~~L~Ls~N-------~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~ 132 (605)
T 1m9s_A 64 LPNVTKLFLNGNKL--TDIKP--LTNLKNLGWLFLDEN-------KIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ 132 (605)
T ss_dssp CTTCCEEECTTSCC--CCCGG--GGGCTTCCEEECCSS-------CCCCCTTSTTCTTCCEEECTTSCCCCCGGGGGCTT
T ss_pred CCCCCEEEeeCCCC--CCChh--hccCCCCCEEECcCC-------CCCCChhhccCCCCCEEEecCCCCCCCccccCCCc
Confidence 34455555544332 22232 788999999999988 44446633348999999999999998865337999
Q ss_pred ccEEEcCCCCcccCC
Q 037613 534 LVVIEMPHSNIQQFW 548 (553)
Q Consensus 534 L~~L~l~~s~i~~lp 548 (553)
|+.|+|++|.|..++
T Consensus 133 L~~L~Ls~N~l~~l~ 147 (605)
T 1m9s_A 133 LESLYLGNNKITDIT 147 (605)
T ss_dssp CSEEECCSSCCCCCG
T ss_pred cCEEECCCCccCCch
Confidence 999999999888764
No 154
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.36 E-value=0.0025 Score=66.21 Aligned_cols=49 Identities=18% Similarity=0.220 Sum_probs=40.3
Q ss_pred CCCCCCCccchhhhHhhHHhhcc-------------c-cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 158 FPHNNDRLVGVESRVVAIESLLS-------------A-APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 158 ~~~~~~~~vGr~~~~~~l~~~L~-------------~-~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
++.....++|.+..++.|...+. . .+-+.++|++|+|||+||+++++..
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 34455779999999988887652 1 4679999999999999999999976
No 155
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.36 E-value=0.00022 Score=71.72 Aligned_cols=50 Identities=24% Similarity=0.377 Sum_probs=42.3
Q ss_pred CCCCCCCccchhhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 158 FPHNNDRLVGVESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 158 ~~~~~~~~vGr~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.|.....++|++..++.+...+.. .+.+.++|++|+||||+|+.+++.+.
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344557799999999999999877 35599999999999999999998754
No 156
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.35 E-value=0.00028 Score=70.17 Aligned_cols=51 Identities=20% Similarity=0.274 Sum_probs=40.9
Q ss_pred CCCCCCCccchhhhHhhHHhhccc--------------cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 158 FPHNNDRLVGVESRVVAIESLLSA--------------APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 158 ~~~~~~~~vGr~~~~~~l~~~L~~--------------~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
++.....++|.+..++.|...+.. .+-+.++|++|+|||+||+++++....
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~ 77 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS 77 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTC
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCC
Confidence 344456789999999988887721 457999999999999999999997643
No 157
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.35 E-value=0.00035 Score=69.41 Aligned_cols=49 Identities=22% Similarity=0.236 Sum_probs=42.2
Q ss_pred CCCCCCccchhhhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
|...+.++|.+..++.+..++.. ..++.++|++|+|||++|+++++.+.
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 44557899999999999999876 56788889999999999999998763
No 158
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.34 E-value=0.00026 Score=76.76 Aligned_cols=84 Identities=15% Similarity=0.226 Sum_probs=62.0
Q ss_pred CcccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCCCCCCeeEEEecCCCCCCCCCCC-CCC
Q 037613 454 TKSIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPGFAEVRFLHRHGYPLKSLPSNI-NQK 532 (553)
Q Consensus 454 ~~~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~L~~Lr~L~l~~~~l~~LP~~i-~L~ 532 (553)
...++.+.+..+.... + ..|..+++|+.|+|++|. +..+|...+|.+|++|+|++|.+..+ ..+ +|.
T Consensus 86 l~~L~~L~Ls~N~l~~--l--~~l~~l~~L~~L~Ls~N~-------l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~ 153 (605)
T 1m9s_A 86 LKNLGWLFLDENKIKD--L--SSLKDLKKLKSLSLEHNG-------ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLT 153 (605)
T ss_dssp CTTCCEEECCSSCCCC--C--TTSTTCTTCCEEECTTSC-------CCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCT
T ss_pred CCCCCEEECcCCCCCC--C--hhhccCCCCCEEEecCCC-------CCCCccccCCCccCEEECCCCccCCc-hhhcccC
Confidence 3455555555443222 2 258889999999999984 44465433589999999999999998 456 799
Q ss_pred CccEEEcCCCCcccCCC
Q 037613 533 KLVVIEMPHSNIQQFWD 549 (553)
Q Consensus 533 ~L~~L~l~~s~i~~lp~ 549 (553)
+|+.|+|++|.|..++.
T Consensus 154 ~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 154 KLDTLSLEDNQISDIVP 170 (605)
T ss_dssp TCSEEECCSSCCCCCGG
T ss_pred CCCEEECcCCcCCCchh
Confidence 99999999999887753
No 159
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.34 E-value=0.00028 Score=76.66 Aligned_cols=58 Identities=19% Similarity=0.202 Sum_probs=47.1
Q ss_pred CCCcEEEeecccCCCCCCCccccCCCCCCCCeeEEEecCCCCCCCCCCCCCCCccEEEcCCCCcccCCC
Q 037613 481 HKLRFLKFYNSINGDNRCKVSYLQESPGFAEVRFLHRHGYPLKSLPSNINQKKLVVIEMPHSNIQQFWD 549 (553)
Q Consensus 481 ~~LrvL~l~~~~~~~~~~~l~~lp~~i~L~~Lr~L~l~~~~l~~LP~~i~L~~L~~L~l~~s~i~~lp~ 549 (553)
++|+.|+|++| .+..+|. .+.+|++|+|++|+++.+|. .+.+|++|+|++|++..+|.
T Consensus 61 ~~L~~L~L~~N-------~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~ 118 (622)
T 3g06_A 61 AHITTLVIPDN-------NLTSLPA--LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA 118 (622)
T ss_dssp TTCSEEEECSC-------CCSCCCC--CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC
T ss_pred CCCcEEEecCC-------CCCCCCC--cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC
Confidence 68999999988 5555775 57899999999999999988 67788888888887777765
No 160
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.31 E-value=0.00014 Score=76.40 Aligned_cols=63 Identities=10% Similarity=0.175 Sum_probs=49.0
Q ss_pred hhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCcccCC
Q 037613 477 FVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSLPSNI-NQKKLVVIEMPHSNIQQFW 548 (553)
Q Consensus 477 ~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~~s~i~~lp 548 (553)
+..+++|++|+|+++ .+..+|. ++ +.+|++|++++|.+..+|. + ++.+|++|+|++|++..+|
T Consensus 64 ~~~l~~L~~L~Ls~n-------~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~ 128 (466)
T 1o6v_A 64 VEYLNNLTQINFSNN-------QLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDID 128 (466)
T ss_dssp GGGCTTCCEEECCSS-------CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred hhhhcCCCEEECCCC-------ccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCCh
Confidence 677888888888887 4444665 54 8888888888888888887 6 6888888888888887776
No 161
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.31 E-value=0.00036 Score=74.96 Aligned_cols=61 Identities=18% Similarity=0.267 Sum_probs=33.2
Q ss_pred CCCCcEEEeecccCCCCCCCccccCCCCCCCCeeEEEecCCCCCCCCCCCCCCCc-------cEEEcCCCCcccCCCCC
Q 037613 480 MHKLRFLKFYNSINGDNRCKVSYLQESPGFAEVRFLHRHGYPLKSLPSNINQKKL-------VVIEMPHSNIQQFWDGT 551 (553)
Q Consensus 480 ~~~LrvL~l~~~~~~~~~~~l~~lp~~i~L~~Lr~L~l~~~~l~~LP~~i~L~~L-------~~L~l~~s~i~~lp~~~ 551 (553)
+++|+.|+|++| .+..+|. ++ .+|++|++++|.|+.+|. |.- +| ++|+|++|+|..+|.++
T Consensus 159 l~~L~~L~Ls~N-------~L~~lp~-l~-~~L~~L~Ls~N~L~~lp~-~~~-~L~~~~~~L~~L~Ls~N~l~~lp~~l 226 (571)
T 3cvr_A 159 PTSLEVLSVRNN-------QLTFLPE-LP-ESLEALDVSTNLLESLPA-VPV-RNHHSEETEIFFRCRENRITHIPENI 226 (571)
T ss_dssp CTTCCEEECCSS-------CCSCCCC-CC-TTCCEEECCSSCCSSCCC-CC---------CCEEEECCSSCCCCCCGGG
T ss_pred CCCcCEEECCCC-------CCCCcch-hh-CCCCEEECcCCCCCchhh-HHH-hhhcccccceEEecCCCcceecCHHH
Confidence 345555555554 3333554 33 566666666666666666 411 44 66666666666666543
No 162
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.31 E-value=0.00042 Score=68.89 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=35.9
Q ss_pred CCCCccchhhhHhhHHhhccc--------------cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 161 NNDRLVGVESRVVAIESLLSA--------------APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~--------------~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.-+.++|.+..++.|.+.+.. .+-+.++|++|+|||+||+++++..
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 345677877777777665421 4679999999999999999999976
No 163
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.31 E-value=0.00011 Score=77.70 Aligned_cols=88 Identities=8% Similarity=-0.017 Sum_probs=66.4
Q ss_pred ccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCC-C-CCCeeEEEecCCCCCCCCCCCCCCC
Q 037613 456 SIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESP-G-FAEVRFLHRHGYPLKSLPSNINQKK 533 (553)
Q Consensus 456 ~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i-~-L~~Lr~L~l~~~~l~~LP~~i~L~~ 533 (553)
.++.+.+... .-..+.+..|..+++|+.|+|++|.+.+ ..|..+ + |.+|++|+|++|.++.+|....+.+
T Consensus 121 ~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~ 192 (487)
T 3oja_A 121 GKKNIYLANN--KITMLRDLDEGCRSRVQYLDLKLNEIDT------VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAK 192 (487)
T ss_dssp SCEEEECCSS--CCCSGGGBCGGGGSSEEEEECTTSCCCE------EEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTT
T ss_pred CCCEEECCCC--CCCCCCchhhcCCCCCCEEECCCCCCCC------cChHHHhhhCCcccEEecCCCccccccccccCCC
Confidence 3444444333 2334456678899999999999985443 144455 3 8999999999999999988778999
Q ss_pred ccEEEcCCCCcccCCCCC
Q 037613 534 LVVIEMPHSNIQQFWDGT 551 (553)
Q Consensus 534 L~~L~l~~s~i~~lp~~~ 551 (553)
|++|+|+++++..+|.+.
T Consensus 193 L~~L~Ls~N~l~~~~~~~ 210 (487)
T 3oja_A 193 LKTLDLSSNKLAFMGPEF 210 (487)
T ss_dssp CCEEECCSSCCCEECGGG
T ss_pred CCEEECCCCCCCCCCHhH
Confidence 999999999999987653
No 164
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.30 E-value=0.0004 Score=72.24 Aligned_cols=74 Identities=15% Similarity=0.253 Sum_probs=46.0
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCce--EEEEechhhhcccCCHHHHHHHHHHhhccCCCCcccHHHHHHHhcC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGS--CFLENVREESQRLGGLACLRQKLLSNLFRDESMIPDIDLHFKRLSR 259 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~--~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~ 259 (553)
...+.|+|++|+||||||+.+++.+...++.. +++. . ..+..++...+... ....+.+.+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~-~----------~~~~~~~~~~~~~~-----~~~~~~~~~~~ 193 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-S----------EKFLNDLVDSMKEG-----KLNEFREKYRK 193 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE-H----------HHHHHHHHHHHHTT-----CHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-H----------HHHHHHHHHHHHcc-----cHHHHHHHhcC
Confidence 35799999999999999999999876555332 2332 1 12233333333221 12334444444
Q ss_pred CCeEEEEcCCCC
Q 037613 260 RKVLVVFDDVTC 271 (553)
Q Consensus 260 kr~LlVLDdv~~ 271 (553)
+.-+|++||++.
T Consensus 194 ~~~vL~IDEi~~ 205 (440)
T 2z4s_A 194 KVDILLIDDVQF 205 (440)
T ss_dssp TCSEEEEECGGG
T ss_pred CCCEEEEeCccc
Confidence 678999999964
No 165
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.28 E-value=1.4e-05 Score=73.60 Aligned_cols=72 Identities=6% Similarity=0.069 Sum_probs=58.6
Q ss_pred hhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCcccCCC
Q 037613 477 FVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSLPSNI-NQKKLVVIEMPHSNIQQFWD 549 (553)
Q Consensus 477 ~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~~s~i~~lp~ 549 (553)
+.....+..+++.++.+.+....++.+|..++ +.+|++|++++|.++.+| .+ ++.+|++|+|++|++..+|.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~ 87 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIEN 87 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSS
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccc
Confidence 56667777777777665553335666776775 999999999999999999 77 79999999999999999986
No 166
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.24 E-value=0.00044 Score=69.15 Aligned_cols=66 Identities=15% Similarity=0.133 Sum_probs=42.9
Q ss_pred HhhcCCCCcEEEeecccCCCCCCCccccCCCCCCCCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCcccCC
Q 037613 476 TFVKMHKLRFLKFYNSINGDNRCKVSYLQESPGFAEVRFLHRHGYPLKSLPSNI-NQKKLVVIEMPHSNIQQFW 548 (553)
Q Consensus 476 ~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~L~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~~s~i~~lp 548 (553)
.|..+++|+.|+++++ .+..+|...++.+|++|++++|.....+..+ ++.+|++|+++++.+..++
T Consensus 105 ~~~~l~~L~~L~l~~n-------~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 171 (347)
T 4fmz_A 105 ALQNLTNLRELYLNED-------NISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT 171 (347)
T ss_dssp GGTTCTTCSEEECTTS-------CCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred HHcCCCcCCEEECcCC-------cccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCch
Confidence 4677777777777776 3444555224777777777777533333335 6777777777777776654
No 167
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.23 E-value=0.00027 Score=74.03 Aligned_cols=79 Identities=13% Similarity=0.159 Sum_probs=62.0
Q ss_pred cccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCCCCCC-CCC
Q 037613 455 KSIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSLPSNI-NQK 532 (553)
Q Consensus 455 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~LP~~i-~L~ 532 (553)
..++.+.+...... .++ .|..+++|++|+|+++. +..+| ++ +.+|++|++++|.++.+| + ++.
T Consensus 42 ~~L~~L~Ls~n~l~--~~~--~l~~l~~L~~L~Ls~n~-------l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~ 106 (457)
T 3bz5_A 42 ATLTSLDCHNSSIT--DMT--GIEKLTGLTKLICTSNN-------ITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLT 106 (457)
T ss_dssp TTCCEEECCSSCCC--CCT--TGGGCTTCSEEECCSSC-------CSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCT
T ss_pred CCCCEEEccCCCcc--cCh--hhcccCCCCEEEccCCc-------CCeEc--cccCCCCCEEECcCCCCceee--cCCCC
Confidence 34555555444322 232 58899999999999984 44466 65 999999999999999997 7 799
Q ss_pred CccEEEcCCCCcccCC
Q 037613 533 KLVVIEMPHSNIQQFW 548 (553)
Q Consensus 533 ~L~~L~l~~s~i~~lp 548 (553)
+|++|+|+++++..+|
T Consensus 107 ~L~~L~L~~N~l~~l~ 122 (457)
T 3bz5_A 107 KLTYLNCDTNKLTKLD 122 (457)
T ss_dssp TCCEEECCSSCCSCCC
T ss_pred cCCEEECCCCcCCeec
Confidence 9999999999998886
No 168
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.22 E-value=0.001 Score=65.35 Aligned_cols=45 Identities=22% Similarity=0.250 Sum_probs=35.5
Q ss_pred CccchhhhHhhHHhhccc-----------------cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 164 RLVGVESRVVAIESLLSA-----------------APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~-----------------~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
.++|.+..++.|.+.+.. ...+.|+|++|+|||++|+.+++.+..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 378888888877765431 346899999999999999999986543
No 169
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.21 E-value=0.00063 Score=71.31 Aligned_cols=49 Identities=24% Similarity=0.341 Sum_probs=41.8
Q ss_pred CCCCCccchhhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 160 HNNDRLVGVESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 160 ~~~~~~vGr~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
...+.+|||+.+++.+...|.. ..-+.++|++|+|||++|+.+++.+..
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 3445799999999999999865 567789999999999999999997644
No 170
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.21 E-value=0.00067 Score=68.79 Aligned_cols=50 Identities=24% Similarity=0.414 Sum_probs=40.4
Q ss_pred CCCCccchhhhHhhHHhhccc---------------cCEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 161 NNDRLVGVESRVVAIESLLSA---------------APLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~---------------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
.-+++.|.++.+++|.+.+.. .+-|.++|++|+|||.||++++++....|
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f 210 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF 210 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc
Confidence 345688999998888775542 56799999999999999999999865543
No 171
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.00075 Score=69.45 Aligned_cols=48 Identities=21% Similarity=0.389 Sum_probs=39.5
Q ss_pred CCCccchhhhHhhHHhhccc---------------cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 162 NDRLVGVESRVVAIESLLSA---------------APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~---------------~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
.+++.|.++.+++|.+.+.. .+-|.++|++|+|||+||+++++.....
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~ 242 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN 242 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 45678999988888775532 5789999999999999999999986554
No 172
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.20 E-value=0.00061 Score=76.10 Aligned_cols=47 Identities=28% Similarity=0.299 Sum_probs=41.1
Q ss_pred CCCCccchhhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 161 NNDRLVGVESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+.++||+.+++++.+.|.. ..-+.++|.+|+||||+|+.+++.+.
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 346799999999999999876 66789999999999999999998653
No 173
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.17 E-value=0.00045 Score=74.19 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=34.4
Q ss_pred CCCcEEEeecccCCCCCCCccccCCCCCCCCe-------eEEEecCCCCCCCCCCC-CCCCccEEEcCCCCcc
Q 037613 481 HKLRFLKFYNSINGDNRCKVSYLQESPGFAEV-------RFLHRHGYPLKSLPSNI-NQKKLVVIEMPHSNIQ 545 (553)
Q Consensus 481 ~~LrvL~l~~~~~~~~~~~l~~lp~~i~L~~L-------r~L~l~~~~l~~LP~~i-~L~~L~~L~l~~s~i~ 545 (553)
++|+.|+|++| .+..+|. +. .+| ++|++++|.|+.+|..+ ++.+|++|+|++|.+.
T Consensus 180 ~~L~~L~Ls~N-------~L~~lp~-~~-~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 180 ESLEALDVSTN-------LLESLPA-VP-VRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp TTCCEEECCSS-------CCSSCCC-CC---------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred CCCCEEECcCC-------CCCchhh-HH-HhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC
Confidence 66777777766 3444554 31 134 77777777777777766 5777777777776664
No 174
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.17 E-value=0.00067 Score=69.34 Aligned_cols=51 Identities=24% Similarity=0.260 Sum_probs=41.9
Q ss_pred CCCCCCCCccchhhhHhhHHhhccc--------------cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 157 LFPHNNDRLVGVESRVVAIESLLSA--------------APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 157 ~~~~~~~~~vGr~~~~~~l~~~L~~--------------~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+.....++|.+..++.+...+.. .+-+.|+|++|+|||+||++++++..
T Consensus 109 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 109 GTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 3445567899999999999887721 46899999999999999999998754
No 175
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.0006 Score=70.11 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=40.9
Q ss_pred CCCCCCccchhhhHhhHHhhccc---------------cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA---------------APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~---------------~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
......+.|.++..++|.+.+.. .+-|.++|++|+|||.||++++++....
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~ 242 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT 242 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC
Confidence 34456789999999888775432 6789999999999999999999986554
No 176
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.13 E-value=0.00077 Score=67.96 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=39.5
Q ss_pred CCCCCCccchhhhHhhHHhhccc--------------cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA--------------APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~--------------~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
+.....++|.+..++.|...+.. .+-|.++|++|+|||+||+++++...
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 34456799999998888876621 34689999999999999999999764
No 177
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.13 E-value=0.0007 Score=70.74 Aligned_cols=65 Identities=17% Similarity=0.235 Sum_probs=44.6
Q ss_pred HhhcCCCCcEEEeecccCCCCCCCccccCCCCCCCCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCcccCCCC
Q 037613 476 TFVKMHKLRFLKFYNSINGDNRCKVSYLQESPGFAEVRFLHRHGYPLKSLPSNI-NQKKLVVIEMPHSNIQQFWDG 550 (553)
Q Consensus 476 ~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~L~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~~s~i~~lp~~ 550 (553)
.|..+++|+.|+++++. +..+|.. ..+|++|++++|.++.+| .+ ++.+|++|+++++++..+|..
T Consensus 148 ~~~~l~~L~~L~l~~N~-------l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~ 213 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNS-------LKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL 213 (454)
T ss_dssp CCTTCTTCCEEECCSSC-------CSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC
T ss_pred ccCCCCCCCEEECCCCc-------CcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC
Confidence 37888888888888873 3335532 247777777777777777 45 677777777777777666643
No 178
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.12 E-value=0.00024 Score=61.75 Aligned_cols=43 Identities=21% Similarity=0.214 Sum_probs=35.2
Q ss_pred CccchhhhHhhHHhhccc----cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 164 RLVGVESRVVAIESLLSA----APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~----~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.++|++..++++.+.+.. ..-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999888887744 5568899999999999999999854
No 179
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.0012 Score=67.96 Aligned_cols=49 Identities=20% Similarity=0.383 Sum_probs=40.1
Q ss_pred CCCccchhhhHhhHHhhccc---------------cCEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 162 NDRLVGVESRVVAIESLLSA---------------APLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~---------------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
...+.|.++..++|.+.+.. .+-|.++|++|+|||+||++++++....|
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f 271 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF 271 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe
Confidence 35788999999888775432 67899999999999999999999866543
No 180
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.08 E-value=0.001 Score=66.10 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=23.6
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
...+.|+|++|+||||||+.+++....
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 357999999999999999999997644
No 181
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.00093 Score=68.61 Aligned_cols=48 Identities=17% Similarity=0.277 Sum_probs=39.3
Q ss_pred CCCccchhhhHhhHHhhccc---------------cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 162 NDRLVGVESRVVAIESLLSA---------------APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~---------------~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
..++.|.++..++|.+.+.. .+-|.++|++|+|||+||+++++.....
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~ 233 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA 233 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 35788999998888776542 5669999999999999999999986544
No 182
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.0011 Score=67.60 Aligned_cols=50 Identities=26% Similarity=0.444 Sum_probs=40.1
Q ss_pred CCCCccchhhhHhhHHhhccc---------------cCEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 161 NNDRLVGVESRVVAIESLLSA---------------APLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~---------------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
..+++.|.++..++|.+.+.. .+-|.++|++|+|||.||++++++....|
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f 244 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF 244 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE
Confidence 345678999988888775532 57899999999999999999999866543
No 183
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.02 E-value=0.00063 Score=68.40 Aligned_cols=73 Identities=15% Similarity=0.274 Sum_probs=53.6
Q ss_pred ccChhHhhcCC-CCcEEEeecccCCCCCCCccccCCCC-CCCCeeEEEecC-CCCCCCCCCC--CCCCccEEEcCCCCcc
Q 037613 471 RLNPNTFVKMH-KLRFLKFYNSINGDNRCKVSYLQESP-GFAEVRFLHRHG-YPLKSLPSNI--NQKKLVVIEMPHSNIQ 545 (553)
Q Consensus 471 ~~~~~~~~~~~-~LrvL~l~~~~~~~~~~~l~~lp~~i-~L~~Lr~L~l~~-~~l~~LP~~i--~L~~L~~L~l~~s~i~ 545 (553)
.++...|..+. .|++|+|+++ .++.+|..+ ...+|+.|++.+ +.++.+|... ++.+|++|||++++|+
T Consensus 143 ~l~~~~f~~~~~~l~~L~L~~N-------~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 143 TIERNSFVGLSFESVILWLNKN-------GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp EECTTSSTTSBSSCEEEECCSS-------CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred cccccchhhcchhhhhhccccc-------cccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 34555566554 5888888877 666687766 367888888875 4688888754 5888888888888888
Q ss_pred cCCCC
Q 037613 546 QFWDG 550 (553)
Q Consensus 546 ~lp~~ 550 (553)
.+|.+
T Consensus 216 ~lp~~ 220 (350)
T 4ay9_X 216 SLPSY 220 (350)
T ss_dssp CCCSS
T ss_pred ccChh
Confidence 88875
No 184
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.01 E-value=0.00036 Score=69.81 Aligned_cols=51 Identities=29% Similarity=0.410 Sum_probs=42.4
Q ss_pred CCCCCCccchhhhHhhHHhhccc-------cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA-------APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~-------~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
|...+.++|++..++.+..++.. ...+.|+|++|+|||+||+++++.....
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~ 82 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN 82 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 34557899999999999888864 3578999999999999999999875443
No 185
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.93 E-value=0.0013 Score=64.79 Aligned_cols=45 Identities=22% Similarity=0.385 Sum_probs=36.4
Q ss_pred CccchhhhHhhHHhhccc-----------cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 164 RLVGVESRVVAIESLLSA-----------APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~-----------~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
.++|.+..++.+...+.. ...+.++|++|+|||++|+.+++....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 477888888877776654 147999999999999999999997644
No 186
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=96.90 E-value=0.00082 Score=66.25 Aligned_cols=59 Identities=12% Similarity=0.090 Sum_probs=50.2
Q ss_pred CCCCcEEEeecccCCCCCCCccccCCCCCCCCeeEEEecCCCCCCCCCCCCCCCccEEEcCCCCccc
Q 037613 480 MHKLRFLKFYNSINGDNRCKVSYLQESPGFAEVRFLHRHGYPLKSLPSNINQKKLVVIEMPHSNIQQ 546 (553)
Q Consensus 480 ~~~LrvL~l~~~~~~~~~~~l~~lp~~i~L~~Lr~L~l~~~~l~~LP~~i~L~~L~~L~l~~s~i~~ 546 (553)
+++|+.|+|++| .+..+|..+. .+|++|++++|+++.+|.--.+.+|++|+|+++.+..
T Consensus 250 ~~~L~~L~Ls~N-------~l~~lp~~~~-~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 250 SSALNSLNLSFA-------GLEQVPKGLP-AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CTTCCCEECCSS-------CCCSCCSCCC-SCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTSC
T ss_pred cCcCCEEECCCC-------CCCchhhhhc-CCCCEEECCCCcCCCCchhhhCCCccEEECcCCCCCC
Confidence 379999999998 5556886554 8999999999999999883379999999999998863
No 187
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.90 E-value=0.0012 Score=61.94 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=40.1
Q ss_pred CCCCCccchh---hhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 160 HNNDRLVGVE---SRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 160 ~~~~~~vGr~---~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
...+.|+|.+ ..++.+..+... .+.+.|+|++|+||||||+.+++..........++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~ 87 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP 87 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3446688743 445566655543 678999999999999999999997655433445554
No 188
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.90 E-value=0.00068 Score=68.16 Aligned_cols=87 Identities=8% Similarity=0.081 Sum_probs=54.3
Q ss_pred ccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCC-C-CCCCee-EEEecCCCCCCCCCC-C-C
Q 037613 456 SIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQES-P-GFAEVR-FLHRHGYPLKSLPSN-I-N 530 (553)
Q Consensus 456 ~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~-i-~L~~Lr-~L~l~~~~l~~LP~~-i-~ 530 (553)
.++.+.+... .-..+++.+|.++++|+.|+|+++.+. +.+|.. + +|.+|+ ++.+.++++..+|.. | +
T Consensus 31 ~l~~L~Ls~N--~i~~i~~~~f~~l~~L~~L~Ls~N~i~------~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~ 102 (350)
T 4ay9_X 31 NAIELRFVLT--KLRVIQKGAFSGFGDLEKIEISQNDVL------EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQN 102 (350)
T ss_dssp TCSEEEEESC--CCSEECTTSSTTCTTCCEEEEECCTTC------CEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCC
T ss_pred CCCEEEccCC--cCCCcCHHHHcCCCCCCEEECcCCCCC------CccChhHhhcchhhhhhhcccCCcccccCchhhhh
Confidence 3444444433 334567788999999999999988432 234433 2 355544 355555667777543 4 5
Q ss_pred CCCccEEEcCCCCcccCCCC
Q 037613 531 QKKLVVIEMPHSNIQQFWDG 550 (553)
Q Consensus 531 L~~L~~L~l~~s~i~~lp~~ 550 (553)
|.+|++|+++++++..+|..
T Consensus 103 l~~L~~L~l~~n~l~~~~~~ 122 (350)
T 4ay9_X 103 LPNLQYLLISNTGIKHLPDV 122 (350)
T ss_dssp CTTCCEEEEEEECCSSCCCC
T ss_pred ccccccccccccccccCCch
Confidence 77777777777777766653
No 189
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.85 E-value=0.0028 Score=55.15 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=30.5
Q ss_pred CccchhhhHhhHHhhccccCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 164 RLVGVESRVVAIESLLSAAPLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
..+|.....-.....+ ....++|+|..|+|||||++.++.....
T Consensus 19 f~~g~n~~~~~~l~~~-~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 19 FLGTENAELVYVLRHK-HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSCCTHHHHHHCCCC-CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred cCcCccHHHHHHHHhc-CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3445544433222222 4678999999999999999999986654
No 190
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.82 E-value=0.0019 Score=67.39 Aligned_cols=62 Identities=15% Similarity=0.072 Sum_probs=31.1
Q ss_pred hhcCCCCcEEEeecccCCCCCCCccccCCCCCCCCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCcccCC
Q 037613 477 FVKMHKLRFLKFYNSINGDNRCKVSYLQESPGFAEVRFLHRHGYPLKSLPSNI-NQKKLVVIEMPHSNIQQFW 548 (553)
Q Consensus 477 ~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~L~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~~s~i~~lp 548 (553)
|..+++|+.|++++|.+.+ +|.. ..+|++|++++|.++.+|. + ++.+|++|+++++++..+|
T Consensus 191 ~~~l~~L~~L~l~~N~l~~-------l~~~--~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~ 253 (454)
T 1jl5_A 191 LQNLPFLTAIYADNNSLKK-------LPDL--PLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLP 253 (454)
T ss_dssp CTTCTTCCEEECCSSCCSS-------CCCC--CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCC
T ss_pred ccCCCCCCEEECCCCcCCc-------CCCC--cCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccc
Confidence 6667777777777663322 2211 1344445555554445543 3 4555555555555444444
No 191
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.80 E-value=0.0017 Score=71.82 Aligned_cols=48 Identities=25% Similarity=0.388 Sum_probs=38.5
Q ss_pred CCCccchhhhHhhHHhhccc---------------cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 162 NDRLVGVESRVVAIESLLSA---------------APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~---------------~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
.+.+.|.++.+++|.+.+.. ++-|.++|++|+|||+||++++++...+
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~ 265 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 34678899888888776432 5679999999999999999999976543
No 192
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.80 E-value=0.0015 Score=68.22 Aligned_cols=48 Identities=27% Similarity=0.313 Sum_probs=38.6
Q ss_pred CCCccchhhhHhhHHhhccc-------cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 162 NDRLVGVESRVVAIESLLSA-------APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~-------~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
.+.++|.+..++.+..++.. .+-+.++|++|+|||+||+++++.....
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~ 90 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSK 90 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTT
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCC
Confidence 36799999888766555432 4679999999999999999999987644
No 193
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.78 E-value=0.00036 Score=60.47 Aligned_cols=44 Identities=16% Similarity=0.147 Sum_probs=34.4
Q ss_pred CccchhhhHhhHHhhccc----cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 164 RLVGVESRVVAIESLLSA----APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~----~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.++|++..++++.+.+.. ..-|.|+|.+|+|||++|+.+++...
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 578998888888887654 55688999999999999999988643
No 194
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.74 E-value=0.001 Score=63.95 Aligned_cols=63 Identities=17% Similarity=0.140 Sum_probs=35.3
Q ss_pred hcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCCCCCC-CCC--CccEEEcCCCCcc
Q 037613 478 VKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSLPSNI-NQK--KLVVIEMPHSNIQ 545 (553)
Q Consensus 478 ~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~LP~~i-~L~--~L~~L~l~~s~i~ 545 (553)
.++.+|+.|+|++|.+.+ +..+|..++ +.+|++|+|+++.++.++. + .|. +|++|+|.++.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~----l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYR----LDDMSSIVQKAPNLKILNLSGNELKSERE-LDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCC----CGGGTTHHHHSTTCCEEECTTSCCCSGGG-GGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCC----CccchhHHhhCCCCCEEECCCCccCCchh-hhhcccCCcceEEccCCcCc
Confidence 455666666666664322 333444443 6666666666666666632 3 333 6666666666654
No 195
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.73 E-value=0.0052 Score=64.10 Aligned_cols=48 Identities=21% Similarity=0.278 Sum_probs=36.4
Q ss_pred CCCCccchhhhHhhHHhhccc--------------cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 161 NNDRLVGVESRVVAIESLLSA--------------APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~--------------~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
....++|.++.++++.+.... .+-|.|+|++|+|||+||++++++...
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~ 75 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV 75 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 345688888777766654321 356889999999999999999997643
No 196
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.72 E-value=0.001 Score=63.65 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=37.5
Q ss_pred CCCCCCccchhhhHhhHHhhccc--------------cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 159 PHNNDRLVGVESRVVAIESLLSA--------------APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~--------------~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
+...+.++|.+..++++.+.+.. .+-+.|+|++|+||||||+++++....
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~ 71 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV 71 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 34456788888777766654321 446889999999999999999987643
No 197
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.69 E-value=0.00087 Score=64.51 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=39.2
Q ss_pred CCCCCccchhhhHhhHHhhccc--------------cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 160 HNNDRLVGVESRVVAIESLLSA--------------APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 160 ~~~~~~vGr~~~~~~l~~~L~~--------------~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
.....++|.+..++.+.+.+.. .+-+.|+|++|+|||+||+++++.....
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~ 71 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVP 71 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCC
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3456789999888888776541 3457899999999999999999976543
No 198
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.64 E-value=0.00059 Score=68.00 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=39.9
Q ss_pred CCccchhhhHhhHHhhccccCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 163 DRLVGVESRVVAIESLLSAAPLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
+.++|++..++.+...+....-+.++|++|+|||+||+.+++.....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred cceeCcHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 46899999998888777666789999999999999999999876443
No 199
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.64 E-value=0.0015 Score=68.69 Aligned_cols=46 Identities=26% Similarity=0.429 Sum_probs=38.8
Q ss_pred CCCccchhhhHhhHHhhccc---------------cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 162 NDRLVGVESRVVAIESLLSA---------------APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~---------------~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
...++|.+..++++.+++.. .+-|.|+|++|+|||++|++++++..
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~ 263 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC
Confidence 35689999999999887642 45799999999999999999998753
No 200
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=96.60 E-value=0.00062 Score=69.33 Aligned_cols=89 Identities=11% Similarity=0.067 Sum_probs=61.5
Q ss_pred ccccccccCCCccccc---cChhHhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCC-----C
Q 037613 456 SIEGICLDMSKANEIR---LNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSL-----P 526 (553)
Q Consensus 456 ~~~~i~l~~~~~~~~~---~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~L-----P 526 (553)
.++.+.+..+...... +.+..+.++++|+.|+|++|.+... +...+|..+. +++|++|++++|.+... |
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~--g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL--GSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH--HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH--HHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 5666655554332111 2333678889999999998854221 2256777665 88999999999988764 6
Q ss_pred CCC-C--CCCccEEEcCCCCccc
Q 037613 527 SNI-N--QKKLVVIEMPHSNIQQ 546 (553)
Q Consensus 527 ~~i-~--L~~L~~L~l~~s~i~~ 546 (553)
..+ . +.+|++|+|++|.+..
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHHhhccCCCeEEEECcCCcCCH
Confidence 666 3 8899999999998887
No 201
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.56 E-value=0.0019 Score=65.28 Aligned_cols=48 Identities=27% Similarity=0.305 Sum_probs=38.1
Q ss_pred CCCccchhhhHhhHHhhc---cc----cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 162 NDRLVGVESRVVAIESLL---SA----APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L---~~----~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
.+.++|++..++.+..+. .. .+.+.|+|++|+|||++|+++++.....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~ 97 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD 97 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 567999999877654443 33 3589999999999999999999987644
No 202
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.54 E-value=0.002 Score=64.70 Aligned_cols=49 Identities=29% Similarity=0.361 Sum_probs=40.8
Q ss_pred CCCCCCCccchhhhHhhHHhhc-cc--cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 158 FPHNNDRLVGVESRVVAIESLL-SA--APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 158 ~~~~~~~~vGr~~~~~~l~~~L-~~--~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.|.....++|.+..++.+..++ .. .+.+.|+|+.|+||||+|+.++..+
T Consensus 9 rP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 9 RPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred CCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4455577999999999999988 54 3339999999999999999999854
No 203
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.50 E-value=0.004 Score=61.32 Aligned_cols=47 Identities=23% Similarity=0.268 Sum_probs=32.4
Q ss_pred hHhhHHhhccc-----cCEEEEeecCCCchHHHHHHHHhhhc-CCCCceEEEE
Q 037613 171 RVVAIESLLSA-----APLLAIWGIGGIGKTTIARATFDKIS-SDFEGSCFLE 217 (553)
Q Consensus 171 ~~~~l~~~L~~-----~~vi~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~ 217 (553)
.++.+.+++.. ...+.|+|++|+|||+||.++++... ..-..+.++.
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 33444444443 46899999999999999999999765 4433344443
No 204
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.48 E-value=0.0021 Score=61.32 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=34.2
Q ss_pred CCCCCccchhhhHhhHHhhccc--------------cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 160 HNNDRLVGVESRVVAIESLLSA--------------APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 160 ~~~~~~vGr~~~~~~l~~~L~~--------------~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
...+.++|.+....++..+... .+-+.|+|++|+||||||+.++....
T Consensus 13 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3445677777665555443321 23489999999999999999998764
No 205
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.41 E-value=0.0015 Score=65.13 Aligned_cols=48 Identities=25% Similarity=0.342 Sum_probs=37.1
Q ss_pred CCCCccchhhhHhhHHhhccc-------cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 161 NNDRLVGVESRVVAIESLLSA-------APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~-------~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
....++|.+..++.+...+.. ...+.++|++|+||||||+.++..+..
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~ 77 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT 77 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 345678887777776665542 367999999999999999999987643
No 206
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.38 E-value=0.0019 Score=63.36 Aligned_cols=44 Identities=25% Similarity=0.327 Sum_probs=35.1
Q ss_pred CccchhhhHhhHHhhccc----------------cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 164 RLVGVESRVVAIESLLSA----------------APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~----------------~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.++|.+..++.+...+.. ...+.++|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 478888877777665532 45688999999999999999998763
No 207
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=96.38 E-value=0.00051 Score=69.98 Aligned_cols=93 Identities=10% Similarity=0.034 Sum_probs=67.2
Q ss_pred CcccccccccCCCccc--cccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCC--C-CCCeeEEEecCCCCCC----
Q 037613 454 TKSIEGICLDMSKANE--IRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESP--G-FAEVRFLHRHGYPLKS---- 524 (553)
Q Consensus 454 ~~~~~~i~l~~~~~~~--~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i--~-L~~Lr~L~l~~~~l~~---- 524 (553)
...++.+.+....... ....+..+..+++|+.|+|++|.+.+. +...+|..+ + +.+|++|++++|++..
T Consensus 215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~--~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~ 292 (386)
T 2ca6_A 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR--GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR 292 (386)
T ss_dssp CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH--HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH
T ss_pred CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh--hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH
Confidence 4566666665443211 123345788999999999999965441 233345554 3 7899999999999998
Q ss_pred -CCCCC-C-CCCccEEEcCCCCcccCC
Q 037613 525 -LPSNI-N-QKKLVVIEMPHSNIQQFW 548 (553)
Q Consensus 525 -LP~~i-~-L~~L~~L~l~~s~i~~lp 548 (553)
+|..+ . +++|++|+|++|.+....
T Consensus 293 ~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 293 TLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHhcCCCceEEEccCCcCCcch
Confidence 99988 4 899999999999887543
No 208
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.37 E-value=0.0023 Score=71.43 Aligned_cols=48 Identities=25% Similarity=0.342 Sum_probs=41.5
Q ss_pred CCCCCccchhhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 160 HNNDRLVGVESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 160 ~~~~~~vGr~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
...+.+|||+.+++++...|.. ..-+.++|++|+|||++|+.+++.+.
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHh
Confidence 3446799999999999999866 56789999999999999999999763
No 209
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.30 E-value=0.0034 Score=60.23 Aligned_cols=45 Identities=27% Similarity=0.274 Sum_probs=34.0
Q ss_pred CCccchhhhHhhHHhhccc----cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 163 DRLVGVESRVVAIESLLSA----APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~----~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
+.++|.+..+.++.+.+.. ...|.|+|.+|+|||++|+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4588998888877765543 56788999999999999999998644
No 210
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.30 E-value=0.0031 Score=61.08 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=36.7
Q ss_pred CCCCCCCccchhhhHhhHHhhccc--------------cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 158 FPHNNDRLVGVESRVVAIESLLSA--------------APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 158 ~~~~~~~~vGr~~~~~~l~~~L~~--------------~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
++...+.++|.++..+++..+... .+-+.|+|++|+||||||+.++....
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 334456788888776666554322 23489999999999999999998764
No 211
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.29 E-value=0.0038 Score=69.84 Aligned_cols=49 Identities=24% Similarity=0.376 Sum_probs=40.1
Q ss_pred CCCCccchhhhHhhHHhhccc---------------cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 161 NNDRLVGVESRVVAIESLLSA---------------APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 161 ~~~~~vGr~~~~~~l~~~L~~---------------~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
....++|.+..+++|.+++.. ...|.|+|++|+||||||+.++......
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~ 265 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc
Confidence 345789999999988887642 4579999999999999999999876443
No 212
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.25 E-value=0.0023 Score=57.16 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=22.6
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhc
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.+|.|.|++|+||||+|+.++++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998764
No 213
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.14 E-value=0.005 Score=60.33 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.7
Q ss_pred cCEEEEeecCCCchHHHHHHHHhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
.+++.|+|++|+||||||.+++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 567889999999999999999876
No 214
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.11 E-value=0.0035 Score=62.63 Aligned_cols=49 Identities=24% Similarity=0.422 Sum_probs=39.5
Q ss_pred CCCCCCccchhhhHhhHHhhcccc--CEEEEeecCCCchHHHHHHHHhhhc
Q 037613 159 PHNNDRLVGVESRVVAIESLLSAA--PLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 159 ~~~~~~~vGr~~~~~~l~~~L~~~--~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
|.....++|.+..++.+...+... +.+.++|+.|+||||+|+.+++.+.
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 344466889888888888887763 3389999999999999999998754
No 215
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.03 E-value=0.0034 Score=55.58 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=22.5
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhc
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.+|.|.|+.|+||||+|+.++++..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998754
No 216
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.01 E-value=0.004 Score=60.18 Aligned_cols=46 Identities=20% Similarity=0.183 Sum_probs=32.1
Q ss_pred CCccchhhhHhhHHhhccc---------------cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 163 DRLVGVESRVVAIESLLSA---------------APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~---------------~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
..+.|.++..++|.+.+.. .+-++++|++|+||||||+.++.....
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC
Confidence 4466666666666553321 344999999999999999999986543
No 217
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.00 E-value=0.004 Score=59.97 Aligned_cols=45 Identities=13% Similarity=0.097 Sum_probs=32.7
Q ss_pred CCccchhhhHhhHHh-------hcc---c--cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 163 DRLVGVESRVVAIES-------LLS---A--APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~-------~L~---~--~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..++|.+..++++.. .+. . .+.+.|+|++|+|||+||+++++...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 346677666555544 221 1 56789999999999999999999753
No 218
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.96 E-value=0.077 Score=52.62 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=28.9
Q ss_pred hhHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 170 SRVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 170 ~~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
+..+.+...+.. ...+.++|+.|+||||+|+.+++.+.
T Consensus 9 ~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 9 PDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp HHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 344455555543 56799999999999999999998654
No 219
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.95 E-value=0.0065 Score=63.83 Aligned_cols=44 Identities=18% Similarity=0.060 Sum_probs=38.7
Q ss_pred CccchhhhHhhHHhhccccCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 164 RLVGVESRVVAIESLLSAAPLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.++|++..++.+...+....-|.++|++|+|||+||+++++...
T Consensus 23 ~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHHh
Confidence 48999999988887776677899999999999999999998663
No 220
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.95 E-value=0.021 Score=52.61 Aligned_cols=33 Identities=27% Similarity=0.225 Sum_probs=25.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..++.|+|.+|+||||||..++. .. -..++|+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~~-~~~v~~i~ 52 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--LS-GKKVAYVD 52 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--HH-CSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--Hc-CCcEEEEE
Confidence 67999999999999999999987 21 23455554
No 221
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.95 E-value=0.041 Score=55.02 Aligned_cols=45 Identities=22% Similarity=0.317 Sum_probs=32.9
Q ss_pred hhHHhhcc-c----cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 173 VAIESLLS-A----APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 173 ~~l~~~L~-~----~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..+...|. . ..++.|+|++|+||||||.+++......=..++|+.
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 44555555 3 679999999999999999999986544323456765
No 222
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.94 E-value=0.0049 Score=56.48 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=22.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+|+|.|..|+||||+++.+...+.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999987653
No 223
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.92 E-value=0.0042 Score=55.90 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=22.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.+.|.|+|+.|+||||+|+.++++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998763
No 224
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=95.92 E-value=0.0011 Score=65.92 Aligned_cols=65 Identities=12% Similarity=0.079 Sum_probs=39.6
Q ss_pred hhHhhcCCCCcEEEeeccc-CCCCCCCccccCCCCC-CCCeeEEEecCC-CCCC--CCCCC-CCC-CccEEEcCCCC
Q 037613 474 PNTFVKMHKLRFLKFYNSI-NGDNRCKVSYLQESPG-FAEVRFLHRHGY-PLKS--LPSNI-NQK-KLVVIEMPHSN 543 (553)
Q Consensus 474 ~~~~~~~~~LrvL~l~~~~-~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~-~l~~--LP~~i-~L~-~L~~L~l~~s~ 543 (553)
+..|.++++|+.|+|++|. +.+ ..+|..++ +.+|++|++++| .++. +|..+ ++. +|++|+|++|.
T Consensus 135 ~~~l~~~~~L~~L~L~~~~~l~~-----~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 135 VNTLAKNSNLVRLNLSGCSGFSE-----FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp HHHHTTCTTCSEEECTTCBSCCH-----HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred HHHHhcCCCCCEEECCCCCCCCH-----HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 3445667777777777662 221 02444443 667777777777 6664 56556 566 77777777763
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.88 E-value=0.1 Score=53.64 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=24.1
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
..+|.++|.+|+||||++..++..+..+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 5699999999999999999998765544
No 226
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.88 E-value=0.0043 Score=56.76 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=23.4
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+|.|+|+.|+||||+|+.++....
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998763
No 227
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.82 E-value=0.0047 Score=60.73 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=36.3
Q ss_pred CCccchhhhHhhHHhhccc----cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 163 DRLVGVESRVVAIESLLSA----APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~----~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
+.++|++..+.++.+.+.. ...|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 3588999888888877654 5678899999999999999999853
No 228
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.79 E-value=0.0057 Score=61.31 Aligned_cols=27 Identities=19% Similarity=0.053 Sum_probs=23.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
...++|+|..|+|||||++.+++.+..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 679999999999999999999886543
No 229
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.78 E-value=0.0057 Score=59.73 Aligned_cols=28 Identities=32% Similarity=0.587 Sum_probs=24.4
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
++.+.++|++|+|||+||+++++.....
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5678999999999999999999987443
No 230
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.76 E-value=0.0058 Score=61.65 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=33.3
Q ss_pred ccchhhhHhhHHhhcc-----------------ccCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 165 LVGVESRVVAIESLLS-----------------AAPLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 165 ~vGr~~~~~~l~~~L~-----------------~~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
++|.+..++.+...+. ....+.++|++|+|||++|+++++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5677776666666552 145789999999999999999998763
No 231
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.74 E-value=0.0049 Score=54.58 Aligned_cols=20 Identities=30% Similarity=0.508 Sum_probs=18.9
Q ss_pred CEEEEeecCCCchHHHHHHH
Q 037613 183 PLLAIWGIGGIGKTTIARAT 202 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v 202 (553)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 232
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.61 E-value=0.0051 Score=54.63 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.3
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhc
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.+|+|+|+.|+||||+++.++....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999998653
No 233
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.59 E-value=0.0096 Score=62.46 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=36.1
Q ss_pred CCCCCccchhhhHhhHHhhccc--------------cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 160 HNNDRLVGVESRVVAIESLLSA--------------APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 160 ~~~~~~vGr~~~~~~l~~~L~~--------------~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
...++++|.++.+.++.+.... .+-+.|+|++|+||||||++++....
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4456688888777666654321 34589999999999999999998764
No 234
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.58 E-value=0.0059 Score=60.96 Aligned_cols=50 Identities=22% Similarity=0.177 Sum_probs=36.5
Q ss_pred CCCCCCCccchhhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 158 FPHNNDRLVGVESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 158 ~~~~~~~~vGr~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
++...+.++|.+...+.+...+.. ..-+.|+|++|+|||+||+.+++...
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 344556799998866554433322 44589999999999999999998654
No 235
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.52 E-value=0.0072 Score=53.43 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+|+|.|+.|+||||+|+.++++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998754
No 236
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=95.51 E-value=0.0037 Score=61.92 Aligned_cols=61 Identities=10% Similarity=0.050 Sum_probs=40.6
Q ss_pred hHhhcCCCCcEEEeeccc-CCCCCCCccccCCCCC-CCCeeEEEecCCCCCCCCC---CC-CCCCccEEEcCCC
Q 037613 475 NTFVKMHKLRFLKFYNSI-NGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSLPS---NI-NQKKLVVIEMPHS 542 (553)
Q Consensus 475 ~~~~~~~~LrvL~l~~~~-~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~LP~---~i-~L~~L~~L~l~~s 542 (553)
..+.++++|+.|+|++|. +.+ ..+..++ +.+|++|++++|. .-.|. .+ ++.+|++|+|++|
T Consensus 216 ~~~~~~~~L~~L~l~~~~~l~~------~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 216 TLVRRCPNLVHLDLSDSVMLKN------DCFQEFFQLNYLQHLSLSRCY-DIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHHHCTTCSEEECTTCTTCCG------GGGGGGGGCTTCCEEECTTCT-TCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHHhhCCCCCEEeCCCCCcCCH------HHHHHHhCCCCCCEeeCCCCC-CCCHHHHHHHhcCCCCCEEeccCc
Confidence 456778888888888775 222 2333443 7888888888886 22233 35 5888888888877
No 237
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.50 E-value=0.0066 Score=54.14 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=20.4
Q ss_pred CEEEEeecCCCchHHHHHHHHh
Q 037613 183 PLLAIWGIGGIGKTTIARATFD 204 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (553)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 238
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.48 E-value=0.0059 Score=54.67 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=22.4
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.+.|.|+|++|+||||+|+.+++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999865
No 239
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.48 E-value=0.0098 Score=54.76 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=23.0
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+|+|+|+.|+|||||++.+...+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999988654
No 240
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.47 E-value=0.0074 Score=54.50 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=21.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
..+++|+|+.|+|||||++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999875
No 241
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.46 E-value=0.0071 Score=55.30 Aligned_cols=25 Identities=20% Similarity=0.454 Sum_probs=22.7
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..+|+|.|+.|+||||+|+.++...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999875
No 242
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=95.44 E-value=0.0051 Score=61.92 Aligned_cols=63 Identities=10% Similarity=0.102 Sum_probs=38.3
Q ss_pred CCCcEEEeecccCCCCCCCccccCCCC-CC-CCeeEEEecCCCCCCCCCC-----C-C-CCCccEEEcCCCCcc
Q 037613 481 HKLRFLKFYNSINGDNRCKVSYLQESP-GF-AEVRFLHRHGYPLKSLPSN-----I-N-QKKLVVIEMPHSNIQ 545 (553)
Q Consensus 481 ~~LrvL~l~~~~~~~~~~~l~~lp~~i-~L-~~Lr~L~l~~~~l~~LP~~-----i-~-L~~L~~L~l~~s~i~ 545 (553)
++|+.|+|++|.+.+. ....+...+ .+ .+|++|++++|.++..+.. + . ..+|++|+|++|.+.
T Consensus 80 ~~L~~L~Ls~n~l~~~--~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYK--SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp TTCCEEECCSSCGGGS--CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred CCccEEECcCCcCChH--HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 7788888887743331 111111112 12 6788888888887777643 2 2 358888888888776
No 243
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.41 E-value=0.0094 Score=53.97 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..+|+|.|+.|+||||+|+.+++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999999865
No 244
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.40 E-value=0.0071 Score=54.32 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.3
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhc
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
++|+|.|++|+||||+|+.++.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998754
No 245
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.40 E-value=0.0066 Score=54.12 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.1
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhc
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..|.|.|++|+||||+|+.++.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999998754
No 246
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.40 E-value=0.044 Score=56.47 Aligned_cols=88 Identities=16% Similarity=0.174 Sum_probs=53.1
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC-CCceEEEEechhhhcccCCHHHHHHHHHHhhccC--------------CCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD-FEGSCFLENVREESQRLGGLACLRQKLLSNLFRD--------------ESM 246 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~--------------~~~ 246 (553)
-..++|.|..|+|||+|+..+++.+... -+.++++ .+++-. .....+.+++...-... ..+
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~-~iGER~---rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~ 228 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGERT---REGNDLYHEMIESGVINLKDATSKVALVYGQMNE 228 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE-EESCCH---HHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTS
T ss_pred CCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE-ECCCcc---hHHHHHHHHhhhccccccccCCceEEEEEECCCC
Confidence 6789999999999999999999876433 3444444 343322 33556666665431110 001
Q ss_pred c--------ccHHHHHHHh---cCCCeEEEEcCCCChH
Q 037613 247 I--------PDIDLHFKRL---SRRKVLVVFDDVTCFN 273 (553)
Q Consensus 247 ~--------~~~~~l~~~L---~~kr~LlVLDdv~~~~ 273 (553)
. ...-.+.+++ +++.+||++||+....
T Consensus 229 p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR~A 266 (482)
T 2ck3_D 229 PPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFT 266 (482)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHH
Confidence 0 1112233443 4689999999997553
No 247
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=95.36 E-value=0.02 Score=56.69 Aligned_cols=85 Identities=12% Similarity=0.142 Sum_probs=63.4
Q ss_pred cccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCC--CCCCee-EEEecCCCCCCCCCC-C-
Q 037613 455 KSIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESP--GFAEVR-FLHRHGYPLKSLPSN-I- 529 (553)
Q Consensus 455 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i--~L~~Lr-~L~l~~~~l~~LP~~-i- 529 (553)
..++.+.+. .+.-..++..+|..+.+|+.|+|.++ +..+++.. ++.+|+ .|.+.. +++.+++. |
T Consensus 226 ~~L~~l~L~--~n~i~~I~~~aF~~~~~L~~l~l~~n--------i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~ 294 (329)
T 3sb4_A 226 PNLVSLDIS--KTNATTIPDFTFAQKKYLLKIKLPHN--------LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFM 294 (329)
T ss_dssp TTCCEEECT--TBCCCEECTTTTTTCTTCCEEECCTT--------CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTT
T ss_pred CCCeEEECC--CCCcceecHhhhhCCCCCCEEECCcc--------cceehHHHhhCChhccEEEEEcc-cceEEchhhhh
Confidence 344444444 32345678888999999999988753 55677654 488898 999988 78888854 5
Q ss_pred CCCCccEEEcCCCCcccCCCC
Q 037613 530 NQKKLVVIEMPHSNIQQFWDG 550 (553)
Q Consensus 530 ~L~~L~~L~l~~s~i~~lp~~ 550 (553)
++.+|+.|++.+++|+.++.+
T Consensus 295 ~c~~L~~l~l~~n~i~~I~~~ 315 (329)
T 3sb4_A 295 GCDNLRYVLATGDKITTLGDE 315 (329)
T ss_dssp TCTTEEEEEECSSCCCEECTT
T ss_pred CCccCCEEEeCCCccCccchh
Confidence 699999999988888888764
No 248
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.33 E-value=0.014 Score=52.51 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=23.0
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
..|.|.|+.|+||||+|+.+++++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999999997654
No 249
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.32 E-value=0.11 Score=52.17 Aligned_cols=46 Identities=22% Similarity=0.316 Sum_probs=33.3
Q ss_pred HhhHHhhcc-c----cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 172 VVAIESLLS-A----APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 172 ~~~l~~~L~-~----~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
...|..+|. . ..++.|+|.+|+||||||..++......=..++|+.
T Consensus 59 ~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 59 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 344455555 2 679999999999999999998876543333567776
No 250
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.32 E-value=0.0091 Score=53.75 Aligned_cols=26 Identities=23% Similarity=0.542 Sum_probs=23.1
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
.+|.|.|++|+||||+|+.++++...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999987653
No 251
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.31 E-value=0.0092 Score=53.57 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.3
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhc
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
++++|+|+.|+|||||++.+.....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999987643
No 252
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.27 E-value=0.0085 Score=54.63 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=21.9
Q ss_pred EEEEeecCCCchHHHHHHHHhhhc
Q 037613 184 LLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.|+|.|+.|+||||+|+.+++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998764
No 253
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.26 E-value=0.046 Score=56.44 Aligned_cols=88 Identities=15% Similarity=0.177 Sum_probs=49.7
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhc--------cCCCCc---cc-
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLF--------RDESMI---PD- 249 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~--------~~~~~~---~~- 249 (553)
...++|+|..|+|||||+..+......++...+-+..+++-. .....+..++...-. ....+. ..
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGert---tev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~ 227 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERT---REGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMR 227 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSCH---HHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeeccCc---hHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHH
Confidence 567999999999999999999986655444333333333322 223444444432200 011111 00
Q ss_pred ----HHHHHHHh---cCCCeEEEEcCCCCh
Q 037613 250 ----IDLHFKRL---SRRKVLVVFDDVTCF 272 (553)
Q Consensus 250 ----~~~l~~~L---~~kr~LlVLDdv~~~ 272 (553)
.-.+.+++ +++.+||++||+...
T Consensus 228 ~~~~~ltiAEyFrd~~G~~VLl~~D~itR~ 257 (473)
T 1sky_E 228 VALTGLTMAEYFRDEQGQDGLLFIDNIFRF 257 (473)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEEEECTHHH
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 11233333 578999999999654
No 254
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.26 E-value=0.067 Score=52.35 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=24.2
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
..+++|+|.+|+||||++..++..+...
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 4689999999999999999999866543
No 255
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.26 E-value=0.0094 Score=53.82 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=22.3
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..+|.|.|++|+||||+|+.++++.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999999875
No 256
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.25 E-value=0.029 Score=51.52 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.7
Q ss_pred EEEEeecCCCchHHHHHHHHhhh
Q 037613 184 LLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
+|.|.|++|+||||.|+.+++++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999864
No 257
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.25 E-value=0.0091 Score=53.95 Aligned_cols=29 Identities=28% Similarity=0.484 Sum_probs=24.1
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCCCC
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSDFE 211 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~F~ 211 (553)
|.|.|+|++|+|||||++++..+....|.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~ 30 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeE
Confidence 56899999999999999999887555443
No 258
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.22 E-value=0.0098 Score=54.36 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=23.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+|+|+|+.|+||||||+.++....
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999998765
No 259
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.22 E-value=0.0091 Score=53.88 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=23.8
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
++++|.|+.|+|||||++.+.......|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 6799999999999999999998655433
No 260
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.20 E-value=0.013 Score=59.40 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
...+.++|++|+|||++|+.+++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999999764
No 261
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.19 E-value=0.015 Score=52.29 Aligned_cols=27 Identities=33% Similarity=0.400 Sum_probs=23.6
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
..+|.|.|++|+||||+++.++.....
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 457999999999999999999987653
No 262
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.16 E-value=0.011 Score=54.03 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=22.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..+|+|.|+.|+|||||++.++...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 5689999999999999999999876
No 263
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.15 E-value=0.012 Score=53.37 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=23.3
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+|+|.|+.|+||||+|+.++++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999998753
No 264
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.15 E-value=0.0094 Score=56.80 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=22.0
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhc
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.+|.|.|+.|+||||||+.++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4689999999999999999998653
No 265
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.14 E-value=0.0083 Score=53.70 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=18.3
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhc
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.+|.|.|+.|+||||+|+.++++..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999987654
No 266
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.13 E-value=0.013 Score=54.05 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=23.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
..+++|+|+.|+|||||++.+......
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 568999999999999999999987543
No 267
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.10 E-value=0.0092 Score=52.87 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.2
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhc
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.+|.|.|+.|+||||+|+.++++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998753
No 268
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.10 E-value=0.012 Score=53.05 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
...|+|+|+.|+||||+|+.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999986
No 269
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.09 E-value=0.065 Score=52.70 Aligned_cols=51 Identities=16% Similarity=0.122 Sum_probs=35.3
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSN 239 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~ 239 (553)
..++.|.|.+|+||||||..++.....+-..++|+. . . .....+...++..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s-l-----E-~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS-L-----E-MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE-S-----S-SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE-C-----C-CCHHHHHHHHHHH
Confidence 679999999999999999999875443324555654 1 1 3455566666554
No 270
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.08 E-value=0.012 Score=53.76 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=20.5
Q ss_pred CEEEEeecCCCchHHHHHHHHh
Q 037613 183 PLLAIWGIGGIGKTTIARATFD 204 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (553)
.+|+|+|+.|+||||+++.++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 271
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.08 E-value=0.008 Score=59.79 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=23.6
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
...|.|+|+.|+||||+++.++..+.-.|
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 34589999999999999999998655443
No 272
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.03 E-value=0.011 Score=54.15 Aligned_cols=26 Identities=27% Similarity=0.583 Sum_probs=23.3
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+|.|+|++|+|||||++.+.....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 57899999999999999999988653
No 273
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.02 E-value=0.012 Score=52.29 Aligned_cols=24 Identities=21% Similarity=0.530 Sum_probs=21.8
Q ss_pred CEEEEeecCCCchHHHHHHHHhhh
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.+|+|+|+.|+||||+|+.++...
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 579999999999999999998764
No 274
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.02 E-value=0.013 Score=54.52 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=21.9
Q ss_pred CEEEEeecCCCchHHHHHHHHhhh
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.+|+|+|+.|+||||+|+.++...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998764
No 275
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.99 E-value=0.019 Score=52.81 Aligned_cols=28 Identities=21% Similarity=0.433 Sum_probs=24.4
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
..+|+|.|+.|+||||+|+.+++++...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999876544
No 276
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.98 E-value=0.012 Score=53.09 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.7
Q ss_pred CEEEEeecCCCchHHHHHHHHhhh
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.+|+|.|+.|+||||+|+.+++..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998865
No 277
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.96 E-value=0.013 Score=51.59 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=21.6
Q ss_pred EEEEeecCCCchHHHHHHHHhhhc
Q 037613 184 LLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.|+|.|+.|+||||+|+.+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998654
No 278
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.96 E-value=0.054 Score=53.38 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=24.2
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
..+++|+|.+|+||||++..++..+...
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 5689999999999999999999866543
No 279
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.96 E-value=0.013 Score=53.47 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=22.2
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..+++|+|+.|+|||||++.++...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998753
No 280
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.96 E-value=0.014 Score=53.15 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=28.6
Q ss_pred hHhhHHhhccc---cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 171 RVVAIESLLSA---APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 171 ~~~~l~~~L~~---~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
-+..+..++.. ...+.|+|++|+||||+|.++++.+..
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34455555555 247999999999999999999987643
No 281
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.93 E-value=0.049 Score=57.97 Aligned_cols=45 Identities=27% Similarity=0.440 Sum_probs=34.3
Q ss_pred CccchhhhHhhHHhhccc--------cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 164 RLVGVESRVVAIESLLSA--------APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~--------~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
..+|.+...+.+...+.. ...+.++|++|+||||||+.++.....
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 367877776666543321 568999999999999999999987643
No 282
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.92 E-value=0.016 Score=62.70 Aligned_cols=51 Identities=20% Similarity=0.315 Sum_probs=42.2
Q ss_pred CCCCCccchhhhHhhHHhhccccCEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 160 HNNDRLVGVESRVVAIESLLSAAPLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 160 ~~~~~~vGr~~~~~~l~~~L~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
.....++|.+..++.+...+.....+.|+|++|+||||||+.++.......
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred cccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 344568999988888888877778999999999999999999998654443
No 283
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.88 E-value=0.014 Score=52.35 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=21.6
Q ss_pred CEEEEeecCCCchHHHHHHHHhhh
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..|++.|+.|+||||+|+.++++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999865
No 284
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=94.87 E-value=0.0061 Score=61.33 Aligned_cols=89 Identities=13% Similarity=0.144 Sum_probs=59.5
Q ss_pred cccccccCCCccccccCh----hHhhcCC-CCcEEEeecccCCCCCCCccccCCCC-C-CCCeeEEEecCCCCCCCCCC-
Q 037613 457 IEGICLDMSKANEIRLNP----NTFVKMH-KLRFLKFYNSINGDNRCKVSYLQESP-G-FAEVRFLHRHGYPLKSLPSN- 528 (553)
Q Consensus 457 ~~~i~l~~~~~~~~~~~~----~~~~~~~-~LrvL~l~~~~~~~~~~~l~~lp~~i-~-L~~Lr~L~l~~~~l~~LP~~- 528 (553)
++.+.+.... -..... ..|.+++ +|+.|+|++|.+.+. +...+...+ . ..+|++|++++|.++..+..
T Consensus 24 L~~L~Ls~n~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~--~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 24 VTSLDLSLNN--LYSISTVELIQAFANTPASVTSLNLSGNSLGFK--NSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp CCEEECTTSC--GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGS--CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred ceEEEccCCC--CChHHHHHHHHHHHhCCCceeEEECcCCCCCHH--HHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 5555554443 233344 6788888 899999999854431 111111111 1 18999999999998877654
Q ss_pred ----C-CC-CCccEEEcCCCCcccCCC
Q 037613 529 ----I-NQ-KKLVVIEMPHSNIQQFWD 549 (553)
Q Consensus 529 ----i-~L-~~L~~L~l~~s~i~~lp~ 549 (553)
+ .+ .+|++|+|++|.+...+.
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 126 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKSS 126 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHHH
Confidence 3 34 899999999999987653
No 285
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.87 E-value=0.077 Score=51.93 Aligned_cols=38 Identities=5% Similarity=0.013 Sum_probs=28.4
Q ss_pred hhhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhh
Q 037613 168 VESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 168 r~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
-++.++.+...+.. .+...++|+.|+||||+|+.+++.
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 34455566665554 468899999999999999999875
No 286
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.85 E-value=0.014 Score=52.59 Aligned_cols=22 Identities=32% Similarity=0.444 Sum_probs=20.2
Q ss_pred CEEEEeecCCCchHHHHHHHHh
Q 037613 183 PLLAIWGIGGIGKTTIARATFD 204 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (553)
.+++|.|+.|+|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999986
No 287
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=94.84 E-value=0.027 Score=55.65 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=28.5
Q ss_pred CCCeeEEEecCCCCCCCCCCC--CCCCccEEEcCCCCcccCCCC
Q 037613 509 FAEVRFLHRHGYPLKSLPSNI--NQKKLVVIEMPHSNIQQFWDG 550 (553)
Q Consensus 509 L~~Lr~L~l~~~~l~~LP~~i--~L~~L~~L~l~~s~i~~lp~~ 550 (553)
+.+|++|++++++++.+|... ++.+|+.|+|+++ |+.++.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~ 267 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQR 267 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHH
Confidence 457777777777777777653 5777777777765 6666653
No 288
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.84 E-value=0.024 Score=51.81 Aligned_cols=28 Identities=36% Similarity=0.329 Sum_probs=24.0
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
..|.|.|+.|+||||+|+.+++......
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 4789999999999999999998765433
No 289
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.83 E-value=0.015 Score=53.15 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=22.5
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..+++|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998865
No 290
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.81 E-value=0.015 Score=52.32 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=22.3
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhc
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.+|+|.|+.|+||||+|+.+++...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988653
No 291
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.81 E-value=0.057 Score=55.87 Aligned_cols=88 Identities=17% Similarity=0.154 Sum_probs=54.3
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcC-CCCceEEEEechhhhcccCCHHHHHHHHHHhhccC---------------CC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISS-DFEGSCFLENVREESQRLGGLACLRQKLLSNLFRD---------------ES 245 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~---------------~~ 245 (553)
-..++|.|..|+|||+|+..+++.+.. +-+.++|+ .+++-. .....+.+++...=... ..
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~-~iGER~---rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d 240 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG-GVGERT---REGNDLYMEMKESGVINEQNIAESKVALVYGQMN 240 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE-EESCCS---HHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTT
T ss_pred CCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE-EcccCc---HHHHHHHHhhhcccccccccccccceEEEEeCCC
Confidence 678999999999999999999987643 33455555 343322 33566666665431110 00
Q ss_pred Cc--------ccHHHHHHHhc---CCCeEEEEcCCCChH
Q 037613 246 MI--------PDIDLHFKRLS---RRKVLVVFDDVTCFN 273 (553)
Q Consensus 246 ~~--------~~~~~l~~~L~---~kr~LlVLDdv~~~~ 273 (553)
+. ...-.+.++++ ++.+||++||+....
T Consensus 241 ~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~A 279 (498)
T 1fx0_B 241 EPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFV 279 (498)
T ss_dssp SCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHH
Confidence 00 11223445554 578999999996543
No 292
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.80 E-value=0.015 Score=53.33 Aligned_cols=22 Identities=41% Similarity=0.369 Sum_probs=20.2
Q ss_pred CEEEEeecCCCchHHHHHHHHh
Q 037613 183 PLLAIWGIGGIGKTTIARATFD 204 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (553)
.+|+|.|+.|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999976
No 293
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.79 E-value=0.061 Score=52.40 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=23.3
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+++++|.+|+||||++..++....
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999998654
No 294
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.79 E-value=0.016 Score=52.78 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=22.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
...|.|.|+.|+||||+|+.+++...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34799999999999999999998753
No 295
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.78 E-value=0.013 Score=52.06 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=19.5
Q ss_pred cCEEEEeecCCCchHHHHHHHH
Q 037613 182 APLLAIWGIGGIGKTTIARATF 203 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~ 203 (553)
..+++|+|+.|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4589999999999999999754
No 296
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.78 E-value=0.014 Score=55.42 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=22.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+|+|.|+.|+||||+|+.+...+.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45899999999999999999988654
No 297
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=94.76 E-value=0.0037 Score=64.92 Aligned_cols=63 Identities=14% Similarity=0.142 Sum_probs=37.0
Q ss_pred CCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCC-----CCCC--CCCCccEEEcCCCCccc
Q 037613 482 KLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSL-----PSNI--NQKKLVVIEMPHSNIQQ 546 (553)
Q Consensus 482 ~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~L-----P~~i--~L~~L~~L~l~~s~i~~ 546 (553)
+|+.|+|++|.+... +...+|..++ +++|++|++++|++... ...+ .+.+|++|+|++|++..
T Consensus 86 ~L~~L~L~~n~i~~~--~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 156 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGA--GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 156 (461)
T ss_dssp CCCEEECTTSCCBGG--GHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred ceeEEEccCCCCCHH--HHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence 577777777644331 2234566664 77777777777765432 1111 24567777777776654
No 298
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.76 E-value=0.016 Score=52.18 Aligned_cols=24 Identities=42% Similarity=0.644 Sum_probs=21.9
Q ss_pred EEEEeecCCCchHHHHHHHHhhhc
Q 037613 184 LLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
+|+|.|+.|+||||+|+.+++++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 299
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.74 E-value=0.016 Score=53.12 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.1
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..+|+|+|+.|+||||+|+.+....
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999998753
No 300
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.74 E-value=0.016 Score=53.21 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=22.7
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+|+|+|+.|+|||||++.+...+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999988644
No 301
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.74 E-value=0.053 Score=56.37 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=27.2
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..+++|+|..|+|||||++.++..+... ...+++.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 4599999999999999999999865533 3445553
No 302
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.73 E-value=0.0094 Score=59.68 Aligned_cols=27 Identities=26% Similarity=0.158 Sum_probs=24.0
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
-..++|+|..|+|||+|+..+++.+..
T Consensus 175 GQR~lIfg~~g~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 175 GQRGMIVAPPKAGKTTILKEIANGIAE 201 (427)
T ss_dssp TCEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CceEEEecCCCCChhHHHHHHHHHHhh
Confidence 678999999999999999999986653
No 303
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.72 E-value=0.017 Score=53.02 Aligned_cols=28 Identities=14% Similarity=0.336 Sum_probs=24.2
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
..+|+|.|+.|+||||+|+.+++.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999876543
No 304
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=94.70 E-value=0.0029 Score=64.20 Aligned_cols=89 Identities=10% Similarity=0.095 Sum_probs=57.5
Q ss_pred cccccccccCCCccc--cccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCC-----CC
Q 037613 455 KSIEGICLDMSKANE--IRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKS-----LP 526 (553)
Q Consensus 455 ~~~~~i~l~~~~~~~--~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~-----LP 526 (553)
..++.+.+..+.... .......+..+++|+.|+|++|.+.+. +...|++.+. ..+|+.|+|++|.++. |+
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~--g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~ 232 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDE--GLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHH--HHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcH--HHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence 345555555443211 112234457788899999998865442 3444555553 6789999999998774 44
Q ss_pred CCC-CCCCccEEEcCCCCcc
Q 037613 527 SNI-NQKKLVVIEMPHSNIQ 545 (553)
Q Consensus 527 ~~i-~L~~L~~L~l~~s~i~ 545 (553)
..+ ..++|++|||++|.|.
T Consensus 233 ~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 233 RAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHCSSCCEEECTTSSCC
T ss_pred HHHHhCCCCCEEeccCCCCC
Confidence 445 4688999999988875
No 305
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.70 E-value=0.017 Score=52.55 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=22.5
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..+|+|+|+.|+||||+|+.+.+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998863
No 306
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.69 E-value=0.028 Score=49.80 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=27.2
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC-CCceEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD-FEGSCFL 216 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~ 216 (553)
.++++|.|..|+|||||+..+...+..+ +...+.-
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 4689999999999999999999876544 4444433
No 307
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.68 E-value=0.017 Score=54.54 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=23.1
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+|+|+|+.|+|||||++.++++..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999997653
No 308
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.67 E-value=0.017 Score=51.75 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=21.3
Q ss_pred EEEEeecCCCchHHHHHHHHhhhc
Q 037613 184 LLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.++|+|+.|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999997553
No 309
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.66 E-value=0.024 Score=58.32 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=23.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
.+-|.++|++|+||||+|+.++......
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 3568999999999999999999876544
No 310
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.65 E-value=0.016 Score=52.87 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.2
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..+|+|.|+.|+||||+|+.++++.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999764
No 311
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.63 E-value=0.017 Score=52.55 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=21.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
..+|+|+|+.|+||||+|+.+++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 458999999999999999999885
No 312
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=94.60 E-value=0.0031 Score=65.49 Aligned_cols=71 Identities=17% Similarity=0.181 Sum_probs=48.6
Q ss_pred hhHhhcCCCCcEEEeecccCCCCCCCccccCCCCC--CCCeeEEEecCCCCC-----CCCCCC-CCCCccEEEcCCCCcc
Q 037613 474 PNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG--FAEVRFLHRHGYPLK-----SLPSNI-NQKKLVVIEMPHSNIQ 545 (553)
Q Consensus 474 ~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~--L~~Lr~L~l~~~~l~-----~LP~~i-~L~~L~~L~l~~s~i~ 545 (553)
+..+..+++|+.|+|+++.+.+. +...+...+. ..+|++|++++|+++ .+|..+ .+++|++|+|+++++.
T Consensus 334 ~~~l~~~~~L~~L~Ls~n~i~~~--~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 334 SSVLAQNRFLLELQISNNRLEDA--GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHHCSSCCEEECCSSBCHHH--HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHHHhhCCCccEEEccCCccccc--cHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 34567778888888888754331 2222222221 468888888888887 688887 6888888888888775
Q ss_pred c
Q 037613 546 Q 546 (553)
Q Consensus 546 ~ 546 (553)
.
T Consensus 412 ~ 412 (461)
T 1z7x_W 412 D 412 (461)
T ss_dssp H
T ss_pred H
Confidence 3
No 313
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.56 E-value=0.019 Score=52.24 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=23.1
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.++++|+|+.|+|||||++.+.....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999997654
No 314
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.55 E-value=0.079 Score=52.79 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=22.5
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..++.|+|.+|+||||||..++...
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999988753
No 315
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.50 E-value=0.025 Score=54.95 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=22.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+|+|+|..|+||||||+.+...+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 46899999999999999999887554
No 316
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.50 E-value=0.032 Score=51.44 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=29.6
Q ss_pred hhhHhhHHhhccc--cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 169 ESRVVAIESLLSA--APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 169 ~~~~~~l~~~L~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
++..+.+...+.. .++|+|+|.+|+|||||+..+.......
T Consensus 15 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 15 KRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 3344444444432 6789999999999999999998865444
No 317
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.49 E-value=0.021 Score=53.17 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=22.4
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
...|.|.|+.|+||||+|+.++++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999864
No 318
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.48 E-value=0.063 Score=45.26 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=28.5
Q ss_pred CCeeEEEecCCCCCCCCCCC--CCCCccEEEcCCCCc
Q 037613 510 AEVRFLHRHGYPLKSLPSNI--NQKKLVVIEMPHSNI 544 (553)
Q Consensus 510 ~~Lr~L~l~~~~l~~LP~~i--~L~~L~~L~l~~s~i 544 (553)
.+|++|+|+++.|+.||..+ .+.+|++|+|.++..
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 57888899999999998776 588899999887643
No 319
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.43 E-value=0.017 Score=54.90 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=23.2
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
...|+|+|+.|+||||+++.++....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999998654
No 320
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.43 E-value=0.019 Score=52.40 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.6
Q ss_pred CEEEEeecCCCchHHHHHHHHhhh
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
+.++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999998754
No 321
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.42 E-value=0.019 Score=54.64 Aligned_cols=26 Identities=31% Similarity=0.588 Sum_probs=23.3
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+|+|.|+.|+||||+++.+++++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999997653
No 322
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.40 E-value=0.024 Score=55.11 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.2
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..+|.|.|++|+||||+|+.+..+.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998864
No 323
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.39 E-value=0.02 Score=53.03 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.3
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhc
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..|.|.|+.|+||||+|+.+++...
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998753
No 324
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.39 E-value=0.021 Score=52.62 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.8
Q ss_pred EEEEeecCCCchHHHHHHHHhhh
Q 037613 184 LLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.|+|.|+.|+||||+|+.++++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998765
No 325
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.38 E-value=0.21 Score=51.30 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=24.1
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
.++|.++|.+|+||||+|..++..+...
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 5689999999999999999999866543
No 326
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.35 E-value=0.022 Score=51.46 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.1
Q ss_pred EEEEeecCCCchHHHHHHHHhhhcC
Q 037613 184 LLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
.|+|.|+.|+||||+|+.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987643
No 327
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.35 E-value=0.015 Score=53.54 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=22.0
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhc
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.+|+|.|+.|+||||+|+.+...+.
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999988654
No 328
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.33 E-value=0.023 Score=51.80 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.4
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhc
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
++|+|.|+.|+||||+|+.++....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999998654
No 329
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.33 E-value=0.021 Score=54.54 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=22.2
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhc
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.+|.|.|++|+||||+|+.++..+.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999998643
No 330
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.33 E-value=0.024 Score=51.62 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.6
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
...|+|.|+.|+||||+++.+++++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999876
No 331
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.33 E-value=0.02 Score=53.16 Aligned_cols=25 Identities=24% Similarity=0.110 Sum_probs=22.4
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhc
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..|.|.|+.|+||||+|+.++++..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5689999999999999999998754
No 332
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.30 E-value=0.026 Score=53.32 Aligned_cols=25 Identities=20% Similarity=0.084 Sum_probs=22.4
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
...|+|.|++|+||||+|+.+.++.
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998765
No 333
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.30 E-value=0.085 Score=51.48 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=27.0
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCCC--CceEEEE
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSDF--EGSCFLE 217 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~ 217 (553)
.++-|+|++|+||||||.+++......+ ..++|++
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 3789999999999999999887655432 3456765
No 334
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.29 E-value=0.023 Score=52.47 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.6
Q ss_pred EEEEeecCCCchHHHHHHHHhhh
Q 037613 184 LLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.|+|.|++|+||||+|+.++++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 335
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.21 E-value=0.052 Score=50.18 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=23.6
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
...|.|+|.+|+|||||+..+.......
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 5789999999999999999998764433
No 336
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.17 E-value=0.018 Score=57.72 Aligned_cols=91 Identities=15% Similarity=0.142 Sum_probs=52.3
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceE-EEEechhhhcccCCHHHHHHHHHHhhccCCCCcccHHHHHHHhcCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSC-FLENVREESQRLGGLACLRQKLLSNLFRDESMIPDIDLHFKRLSRR 260 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~-~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~k 260 (553)
..+++|+|+.|+|||||.+.+...+.......+ .+.+..+.... .... +..+.............+...|...
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~--~~~~----~v~q~~~~~~~~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHE--SKKC----LVNQREVHRDTLGFSEALRSALRED 196 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCC--CSSS----EEEEEEBTTTBSCHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhh--cccc----ceeeeeeccccCCHHHHHHHHhhhC
Confidence 569999999999999999999876544322222 22211111000 0000 0000000011123456788889999
Q ss_pred CeEEEEcCCCChHhHHHh
Q 037613 261 KVLVVFDDVTCFNQIESF 278 (553)
Q Consensus 261 r~LlVLDdv~~~~~l~~l 278 (553)
+=+|++|...+.+.++.+
T Consensus 197 PdvillDEp~d~e~~~~~ 214 (356)
T 3jvv_A 197 PDIILVGEMRDLETIRLA 214 (356)
T ss_dssp CSEEEESCCCSHHHHHHH
T ss_pred cCEEecCCCCCHHHHHHH
Confidence 999999999876655543
No 337
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=94.15 E-value=0.0082 Score=53.59 Aligned_cols=88 Identities=7% Similarity=0.013 Sum_probs=54.9
Q ss_pred CcccccccccCCCccccccChhHhhcCCCCcEEEeeccc-CCCCCCCccccCCCCC-CCCeeEEEecCCC-CCCCC-CCC
Q 037613 454 TKSIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSI-NGDNRCKVSYLQESPG-FAEVRFLHRHGYP-LKSLP-SNI 529 (553)
Q Consensus 454 ~~~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~-~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~-l~~LP-~~i 529 (553)
.-.++.+.+..+.... ..-..+..+++|+.|+|++|. +.+. ++..|...-+ ..+|++|++++|+ |+.-- ..+
T Consensus 60 ~~~L~~LDLs~~~Itd--~GL~~L~~~~~L~~L~L~~C~~ItD~--gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L 135 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMS--IGFDHMEGLQYVEKIRLCKCHYIEDG--CLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL 135 (176)
T ss_dssp CCCEEEEEEESCCCCG--GGGGGGTTCSCCCEEEEESCTTCCHH--HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG
T ss_pred CceEeEEeCcCCCccH--HHHHHhcCCCCCCEEEeCCCCccCHH--HHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH
Confidence 3456666555543222 222346789999999999985 3332 5555551100 1379999999995 55311 123
Q ss_pred -CCCCccEEEcCCCC-cc
Q 037613 530 -NQKKLVVIEMPHSN-IQ 545 (553)
Q Consensus 530 -~L~~L~~L~l~~s~-i~ 545 (553)
++++|++|+|++|. |.
T Consensus 136 ~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GGCTTCCEEEEESCTTCC
T ss_pred hcCCCCCEEECCCCCCCC
Confidence 68999999999874 43
No 338
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.15 E-value=0.026 Score=51.84 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=22.7
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..+++|+|+.|+|||||++.+..-.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 5799999999999999999998754
No 339
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.10 E-value=0.026 Score=53.34 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=22.3
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..+|+|.|+.|+|||||++.++..+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998754
No 340
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.06 E-value=0.027 Score=53.95 Aligned_cols=79 Identities=14% Similarity=0.124 Sum_probs=51.1
Q ss_pred ccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCCCCCCeeEEEecCCCCCC-CCC-------
Q 037613 456 SIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPGFAEVRFLHRHGYPLKS-LPS------- 527 (553)
Q Consensus 456 ~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~L~~Lr~L~l~~~~l~~-LP~------- 527 (553)
.++.+.|.......+.-.+..+..+++|+.|+|+++.+.+ +..+...-++ +|++|+|+++++.. +|.
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~----~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS----ERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS----GGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC----chhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 4555555544433333334677899999999999996544 1111111124 99999999999864 553
Q ss_pred CC-CCCCccEEEc
Q 037613 528 NI-NQKKLVVIEM 539 (553)
Q Consensus 528 ~i-~L~~L~~L~l 539 (553)
.+ .+.+|+.||=
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 24 5999999974
No 341
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.01 E-value=0.027 Score=52.12 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=23.1
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.++|.|.|++|+||||.|+.+++++
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999999864
No 342
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.99 E-value=0.025 Score=52.41 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.5
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 5689999999999999999998754
No 343
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.98 E-value=0.026 Score=55.45 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=23.0
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+|+|.|..|+|||||++.+...+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhcc
Confidence 56999999999999999999987544
No 344
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.98 E-value=0.034 Score=54.74 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=22.6
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+|+|.|..|+||||||+.+...+.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34899999999999999999887554
No 345
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.98 E-value=0.048 Score=51.11 Aligned_cols=36 Identities=17% Similarity=0.103 Sum_probs=27.2
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..++.|.|.+|+||||||..++......=..++|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 679999999999999999988775443323455554
No 346
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.97 E-value=0.029 Score=49.99 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.2
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhc
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.+|+|.|+.|+||||+++.++..+.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999998653
No 347
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.94 E-value=0.063 Score=50.16 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=22.3
Q ss_pred cCEEEEeecCCCchHHHHHHHHhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
..+++|+|++|+|||||+..++..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 679999999999999999999875
No 348
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.93 E-value=0.19 Score=51.97 Aligned_cols=35 Identities=17% Similarity=0.128 Sum_probs=26.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFL 216 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 216 (553)
..++.|.|.+|+||||||..++.....+=..++|+
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~f 231 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH 231 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEE
Confidence 67999999999999999999988655441234444
No 349
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.93 E-value=0.054 Score=55.49 Aligned_cols=88 Identities=10% Similarity=0.026 Sum_probs=51.2
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCC---ceEEEEechhhhcccCCHHHHHHHHHHhh-cc-------CCCCc---
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFE---GSCFLENVREESQRLGGLACLRQKLLSNL-FR-------DESMI--- 247 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~---~~~~~~~~~~~s~~~~~~~~l~~~ll~~l-~~-------~~~~~--- 247 (553)
-..++|.|..|+|||+|+..+++....+-+ ..+.+..+++-. ..+..+.+.+...= .. ...+.
T Consensus 151 GQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~---~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~ 227 (465)
T 3vr4_D 151 GQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITF---EEAEFFMEDFRQTGAIDRSVMFMNLANDPAIE 227 (465)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECH---HHHHHHHHHHHHHTGGGGEEEEEEETTSCHHH
T ss_pred CCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCc---HHHHHHHHHHhhcCCccceEEEEECCCCCHHH
Confidence 567899999999999999999986554222 233333343322 33455555554421 00 01111
Q ss_pred -----ccHHHHHHHhc---CCCeEEEEcCCCCh
Q 037613 248 -----PDIDLHFKRLS---RRKVLVVFDDVTCF 272 (553)
Q Consensus 248 -----~~~~~l~~~L~---~kr~LlVLDdv~~~ 272 (553)
...-.+.++++ ++.+||++||+...
T Consensus 228 r~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr~ 260 (465)
T 3vr4_D 228 RIATPRMALTAAEYLAYEKGMHVLVIMTDMTNY 260 (465)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEcChHHH
Confidence 11223445554 68899999999654
No 350
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=93.91 E-value=0.0071 Score=54.63 Aligned_cols=70 Identities=11% Similarity=0.110 Sum_probs=45.7
Q ss_pred hhHhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEe--cCCCCCC-----CCCCC-CCCCccEEEcCCCCc
Q 037613 474 PNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHR--HGYPLKS-----LPSNI-NQKKLVVIEMPHSNI 544 (553)
Q Consensus 474 ~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l--~~~~l~~-----LP~~i-~L~~L~~L~l~~s~i 544 (553)
...+...+.|+.|+|++|.+.+. +...|.+.+. ...|++|+| ++|.+.. |...+ ...+|++|+|+++.|
T Consensus 86 ~~~L~~n~~L~~L~L~~N~i~~~--g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 86 AEMLKVNNTLKSLNVESNFISGS--GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHCSSCCEEECCSSCCCHH--HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHhCCCcCEEECcCCcCCHH--HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 34456667788888887765542 4444555554 667888888 6776654 44444 457788888887765
Q ss_pred c
Q 037613 545 Q 545 (553)
Q Consensus 545 ~ 545 (553)
.
T Consensus 164 ~ 164 (185)
T 1io0_A 164 G 164 (185)
T ss_dssp H
T ss_pred C
Confidence 3
No 351
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.89 E-value=0.028 Score=53.44 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=22.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+|.|.|++|+||||+|+.+.....
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999998753
No 352
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.88 E-value=0.081 Score=52.43 Aligned_cols=53 Identities=21% Similarity=0.196 Sum_probs=36.2
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLF 241 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~ 241 (553)
..++.|.|.+|+||||||..++..+...=..++|+. . . -....+...++....
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS-l-----E-ms~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS-L-----E-MSAEQLALRALSDLT 98 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE-S-----S-SCHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe-C-----C-CCHHHHHHHHHHHhh
Confidence 679999999999999999999886544222344443 1 1 445667777665543
No 353
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.86 E-value=0.032 Score=48.90 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=22.5
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..+++|.|+.|+|||||.+.++.-+
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999999854
No 354
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.84 E-value=0.031 Score=51.61 Aligned_cols=22 Identities=41% Similarity=0.422 Sum_probs=20.3
Q ss_pred CEEEEeecCCCchHHHHHHHHh
Q 037613 183 PLLAIWGIGGIGKTTIARATFD 204 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (553)
.+|+|.|+.|+||||+++.+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 355
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.83 E-value=0.27 Score=50.77 Aligned_cols=52 Identities=17% Similarity=0.117 Sum_probs=35.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCC-ceEEEEechhhhcccCCHHHHHHHHHHhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFE-GSCFLENVREESQRLGGLACLRQKLLSNL 240 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~~~~~~~s~~~~~~~~l~~~ll~~l 240 (553)
..++.|.|.+|+||||||..++..+..... .++|+. . . .+...+...++...
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s-l-----E-~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS-L-----E-MPAAQLTLRMMCSE 252 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE-S-----S-SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE-C-----C-CCHHHHHHHHHHHH
Confidence 679999999999999999999986553322 345554 1 1 34556666666543
No 356
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=93.82 E-value=0.005 Score=66.19 Aligned_cols=64 Identities=11% Similarity=0.009 Sum_probs=39.7
Q ss_pred HhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCCCCCC-CCCCccEEEcCC
Q 037613 476 TFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSLPSNI-NQKKLVVIEMPH 541 (553)
Q Consensus 476 ~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~~ 541 (553)
.+..+++|+.|+|+++.+.+- ....++..++ +++|++|++++|.+..+|..+ ++.+|++|++.+
T Consensus 187 ~~~~~~~L~~L~L~~n~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMTEFAKI--SPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp HHHHCCCCCEEECTTCCCSSC--CHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECB
T ss_pred HHhcCCCccEEEeeccCCCcc--CHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccc
Confidence 455667777777766643310 1123443343 677777777777777777666 577777777764
No 357
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.80 E-value=0.031 Score=52.32 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=23.0
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+|+|.|++|+||||+|+.++..+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998753
No 358
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.79 E-value=0.033 Score=51.20 Aligned_cols=26 Identities=19% Similarity=0.251 Sum_probs=23.1
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+|.|.|+.|+||||+|+.++..+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 56899999999999999999998654
No 359
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.78 E-value=0.13 Score=51.52 Aligned_cols=36 Identities=19% Similarity=0.373 Sum_probs=28.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
.+++.|.|.+|+||||||..++......=..++|+.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 789999999999999999999876544333567776
No 360
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.77 E-value=0.22 Score=48.41 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=23.6
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
..+++++|.+|+||||++..++......
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~ 125 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK 125 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 4589999999999999999999865543
No 361
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.76 E-value=0.035 Score=51.32 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=21.7
Q ss_pred CEEEEeecCCCchHHHHHHHHhhh
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..|.|.|+.|+||||+|+.++++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 362
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.75 E-value=0.035 Score=51.11 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=21.0
Q ss_pred EEEEeecCCCchHHHHHHHHhhh
Q 037613 184 LLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.|.|.|+.|+||||+|+.++++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999865
No 363
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.73 E-value=0.033 Score=55.14 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=22.4
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhc
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.+|+|.|+.|+||||||..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999998653
No 364
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.71 E-value=0.055 Score=52.92 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=27.5
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..+++|+|++|+||||++..++...... ...+.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 5699999999999999999999866543 3445554
No 365
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=93.69 E-value=0.0071 Score=54.61 Aligned_cols=90 Identities=9% Similarity=0.115 Sum_probs=62.7
Q ss_pred CcccccccccCC-Ccc--ccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCC-----
Q 037613 454 TKSIEGICLDMS-KAN--EIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKS----- 524 (553)
Q Consensus 454 ~~~~~~i~l~~~-~~~--~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~----- 524 (553)
...++.+.+... ... ........+...+.|+.|+|++|.+.+. +...+.+.+. ...|++|+|++|.|..
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~--g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP--VAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHH--HHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChH--HHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 455666666544 321 1222345567789999999999876553 4444554453 5789999999998876
Q ss_pred CCCCC-CCCCccEEEc--CCCCcc
Q 037613 525 LPSNI-NQKKLVVIEM--PHSNIQ 545 (553)
Q Consensus 525 LP~~i-~L~~L~~L~l--~~s~i~ 545 (553)
|...+ ...+|++|+| +++.|.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHhCCCceEEEecCCCCCCC
Confidence 56677 5789999999 778775
No 366
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.68 E-value=0.025 Score=55.85 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=22.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.++|.|+|+.|+||||||..+++++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 35899999999999999999998653
No 367
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.63 E-value=0.033 Score=53.84 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHh
Q 037613 182 APLLAIWGIGGIGKTTIARATFD 204 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (553)
..+|+|.|+.|+||||+|+.+..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999983
No 368
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.61 E-value=0.036 Score=52.15 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=21.4
Q ss_pred cCEEEEeecCCCchHHHHHHHHh
Q 037613 182 APLLAIWGIGGIGKTTIARATFD 204 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (553)
..+++|.|+.|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 67999999999999999999884
No 369
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.61 E-value=0.037 Score=51.33 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=22.0
Q ss_pred cCEEEEeecCCCchHHHHHHHHhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
..+++|+|+.|+|||||++.++..
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999999864
No 370
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.60 E-value=0.037 Score=51.36 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=23.3
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+++|+|+.|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 57899999999999999999988654
No 371
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.57 E-value=0.034 Score=52.01 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=22.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
...|.|.|+.|+||||+|+.+++++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998753
No 372
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.57 E-value=0.038 Score=51.38 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=21.1
Q ss_pred EEEEeecCCCchHHHHHHHHhhh
Q 037613 184 LLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.|.|.|+.|+||||+|+.++++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999875
No 373
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.57 E-value=0.046 Score=50.66 Aligned_cols=26 Identities=27% Similarity=0.225 Sum_probs=22.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+++|.|.+|+|||||++.++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999999996543
No 374
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.56 E-value=0.16 Score=50.73 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=33.0
Q ss_pred HhhHHhhcc-c----cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 172 VVAIESLLS-A----APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 172 ~~~l~~~L~-~----~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
...+...|. . ..++.|+|.+|+||||||..++......=..++|+.
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 334445555 2 789999999999999999999875543323456665
No 375
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.49 E-value=0.036 Score=50.13 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=21.8
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhc
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.+++|+|+.|+|||||++.++....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4689999999999999999987543
No 376
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.47 E-value=0.17 Score=46.33 Aligned_cols=30 Identities=23% Similarity=0.524 Sum_probs=25.1
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCCCCc
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSDFEG 212 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~ 212 (553)
..|+|-|.-|+||||+++.+++.+...++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v 32 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDV 32 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCE
Confidence 358889999999999999999988665543
No 377
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.46 E-value=0.058 Score=51.49 Aligned_cols=90 Identities=11% Similarity=0.052 Sum_probs=47.9
Q ss_pred ccCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccCCCCcccHHHHHHHhcCC
Q 037613 181 AAPLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRDESMIPDIDLHFKRLSRR 260 (553)
Q Consensus 181 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~k 260 (553)
...+++|+|+.|+|||||.+.+...+...+...+++.... ..........+..+ ..++. + .......+...|...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~-i~~~~~~~~~~v~q--~~~gl-~-~~~l~~~la~aL~~~ 98 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IEYVFKHKKSIVNQ--REVGE-D-TKSFADALRAALRED 98 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS-CCSCCCCSSSEEEE--EEBTT-T-BSCHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc-ceeecCCcceeeeH--HHhCC-C-HHHHHHHHHHHHhhC
Confidence 3679999999999999999999876544334444443210 00000000000000 00000 0 012344566666667
Q ss_pred CeEEEEcCCCChHhH
Q 037613 261 KVLVVFDDVTCFNQI 275 (553)
Q Consensus 261 r~LlVLDdv~~~~~l 275 (553)
+=+|++|...+.+..
T Consensus 99 p~illlDEp~D~~~~ 113 (261)
T 2eyu_A 99 PDVIFVGEMRDLETV 113 (261)
T ss_dssp CSEEEESCCCSHHHH
T ss_pred CCEEEeCCCCCHHHH
Confidence 778889988755443
No 378
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.46 E-value=0.064 Score=59.65 Aligned_cols=46 Identities=30% Similarity=0.469 Sum_probs=37.2
Q ss_pred CCccchhhhHhhHHhhccc-----------cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 163 DRLVGVESRVVAIESLLSA-----------APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~-----------~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
..++|.+..++.+...+.. ...+.++|++|+|||++|+++++....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~ 547 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFG 547 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHS
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4688999988888776654 116999999999999999999997643
No 379
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.45 E-value=0.029 Score=49.94 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.7
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
.+++|+|..|+|||||++.+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57999999999999999999885543
No 380
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.44 E-value=0.027 Score=52.63 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=16.7
Q ss_pred cCEEEEeecCCCchHHHHHHHH-hhh
Q 037613 182 APLLAIWGIGGIGKTTIARATF-DKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~-~~~ 206 (553)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 643
No 381
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.40 E-value=0.037 Score=54.43 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.2
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhc
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
++|.|+|+.|+||||||+.++++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998653
No 382
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=93.30 E-value=0.006 Score=61.80 Aligned_cols=66 Identities=15% Similarity=0.150 Sum_probs=50.0
Q ss_pred cCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCC-----CCCCC-CCCCccEEEcCCCCccc
Q 037613 479 KMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKS-----LPSNI-NQKKLVVIEMPHSNIQQ 546 (553)
Q Consensus 479 ~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~-----LP~~i-~L~~L~~L~l~~s~i~~ 546 (553)
...+|+.|+|++|.+.+. +...++..+. +.+|++|+|++|++.. |+..+ .+.+|++|+|++|.|..
T Consensus 153 ~~~~L~~L~Ls~n~l~~~--~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAA--GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp TTCCCCEEECCSSCCHHH--HHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred cCCccceeeCCCCCCChH--HHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 468899999999865432 3444555553 7899999999998764 45666 57899999999998863
No 383
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.30 E-value=0.042 Score=53.60 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=21.8
Q ss_pred CEEEEeecCCCchHHHHHHHHhhh
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
++|.|.|+.|+||||||..++.+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 578999999999999999999864
No 384
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.27 E-value=0.075 Score=47.31 Aligned_cols=27 Identities=33% Similarity=0.507 Sum_probs=23.4
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
.++++|+|..|+|||||+..+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 468999999999999999999886543
No 385
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.25 E-value=0.044 Score=53.73 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=23.2
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+|+|.|..|+|||||++.+...+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999988654
No 386
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.24 E-value=0.3 Score=50.06 Aligned_cols=28 Identities=25% Similarity=0.237 Sum_probs=24.0
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
..+|.++|.+|+||||++..++..+...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5689999999999999999999865543
No 387
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.20 E-value=0.028 Score=54.64 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=19.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+|+|.|..|+||||+|+.+.+.+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999988543
No 388
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.12 E-value=0.048 Score=50.81 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=26.3
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFL 216 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 216 (553)
..+++|+|+.|+|||||.+.++--... ..+.+++
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~~p-~~G~i~~ 63 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLDAP-TEGKVFL 63 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSSCC-SEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEE
Confidence 569999999999999999999875432 2345555
No 389
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.06 E-value=0.13 Score=46.72 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=25.7
Q ss_pred EEEEeecCCCchHHHHHHHHhhhcCCCCceEEE
Q 037613 184 LLAIWGIGGIGKTTIARATFDKISSDFEGSCFL 216 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 216 (553)
.|+|-|.-|+||||.++.+++.+...-..+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 477889999999999999999876654344444
No 390
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.00 E-value=0.047 Score=51.30 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=26.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..+++|+|+.|+|||||.+.++.-+.. ..+.+++.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~p-~~G~I~~~ 65 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLDKP-TEGEVYID 65 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEET
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCC-CceEEEEC
Confidence 679999999999999999998864432 24455553
No 391
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.00 E-value=0.067 Score=52.27 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=27.3
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..+++|+|+.|+||||+++.++..+... ...+.+.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l~ 134 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMA 134 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEE
Confidence 4699999999999999999999865543 3445554
No 392
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.00 E-value=0.043 Score=50.44 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=21.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
..+++|+|+.|+|||||.+.++.-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999998864
No 393
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.95 E-value=0.049 Score=53.01 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=22.4
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.++|.|.|+.|+||||||..++++.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999999864
No 394
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.90 E-value=0.095 Score=50.42 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=23.0
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..++.|+|.+|+|||||+..++..+.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 67999999999999999999987543
No 395
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.90 E-value=0.057 Score=60.32 Aligned_cols=49 Identities=22% Similarity=0.372 Sum_probs=38.4
Q ss_pred CCCccchhhhHhhHHhhccc---------------cCEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 162 NDRLVGVESRVVAIESLLSA---------------APLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 162 ~~~~vGr~~~~~~l~~~L~~---------------~~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
...++|.+...+.+.+.+.. ...+.++|++|+||||||++++......|
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~ 539 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCC
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 35678888888887776542 45688999999999999999999765443
No 396
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.89 E-value=0.11 Score=50.38 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=27.5
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCC-ceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFE-GSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~~ 217 (553)
..+++|.|.+|+|||||++.++..+...-. .+.|+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 679999999999999999999986554323 344443
No 397
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=92.89 E-value=0.14 Score=52.80 Aligned_cols=88 Identities=14% Similarity=0.041 Sum_probs=51.4
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCC---CceEEEEechhhhcccCCHHHHHHHHHHhhcc--------CCCCc---
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDF---EGSCFLENVREESQRLGGLACLRQKLLSNLFR--------DESMI--- 247 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F---~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~--------~~~~~--- 247 (553)
-..++|.|..|+|||+|+..+++....+- +..+.+..+++-. ..+..+.+.+...=.. ...+.
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~---~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~ 228 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITN---EEAQYFMSDFEKTGALERAVVFLNLADDPAVE 228 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECH---HHHHHHHHHHHHHSGGGGEEEEEEETTSCHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCc---HHHHHHHHHHHhccCccceEEEEECCCCCHHH
Confidence 56789999999999999999998654322 1233333343322 2355566666543111 01111
Q ss_pred -----ccHHHHHHHhc---CCCeEEEEcCCCCh
Q 037613 248 -----PDIDLHFKRLS---RRKVLVVFDDVTCF 272 (553)
Q Consensus 248 -----~~~~~l~~~L~---~kr~LlVLDdv~~~ 272 (553)
...-.+.++++ ++.+||++||+...
T Consensus 229 r~~~~~~a~tiAEyfrdd~G~dVLl~~DsltR~ 261 (469)
T 2c61_A 229 RIVTPRMALTAAEYLAYEHGMHVLVILTDITNY 261 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEeCHHHH
Confidence 11223444444 68999999998544
No 398
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.88 E-value=0.056 Score=50.93 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=25.7
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCCCCceEEE
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSDFEGSCFL 216 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 216 (553)
.+++|+|+.|+|||||.+.++.-... ..+.+++
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~i~~ 57 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKP-DRGEVRL 57 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCC-SEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEE
Confidence 68999999999999999999875432 2345555
No 399
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.86 E-value=0.29 Score=48.30 Aligned_cols=120 Identities=18% Similarity=0.163 Sum_probs=66.6
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccCCCCcccHHHHHHHhcCCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRDESMIPDIDLHFKRLSRRK 261 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~L~~kr 261 (553)
...++|+|..|+|||||++.+...+.. -...+.+.+..+.... ... .... +.. .........+...|..++
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~--~~~----~~i~-~~~-ggg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFK--HHK----NYTQ-LFF-GGNITSADCLKSCLRMRP 241 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCS--SCS----SEEE-EEC-BTTBCHHHHHHHHTTSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccc--cch----hEEE-EEe-CCChhHHHHHHHHhhhCC
Confidence 679999999999999999999986543 2455666543321100 000 0000 000 012234556777788888
Q ss_pred eEEEEcCCCChHhHHHhhccchhhh--hcCCCCCCCcHHHHHHHHHHHhcCCc
Q 037613 262 VLVVFDDVTCFNQIESFIGSLECRH--AFKQNHPDVGYEELSSKVIQHAQGVP 312 (553)
Q Consensus 262 ~LlVLDdv~~~~~l~~l~~~~~~~~--af~~~~~~~~~~~~~~~iv~~c~glP 312 (553)
=+|++|.+...+.++.+. ..-..+ .+...+.. ...+.+.+++....|-|
T Consensus 242 ~ilildE~~~~e~~~~l~-~~~~g~~tvi~t~H~~-~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 242 DRIILGELRSSEAYDFYN-VLCSGHKGTLTTLHAG-SSEEAFIRLANMSSSNS 292 (330)
T ss_dssp SEEEECCCCSTHHHHHHH-HHHTTCCCEEEEEECS-SHHHHHHHHHHHHHTSG
T ss_pred CEEEEcCCChHHHHHHHH-HHhcCCCEEEEEEccc-HHHHHhhhheehhcCCc
Confidence 899999998755443321 110000 01111222 25667777777776654
No 400
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.85 E-value=0.05 Score=52.95 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.9
Q ss_pred CEEEEeecCCCchHHHHHHHHhh
Q 037613 183 PLLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
.+|.|.|++|+||||+|+.+.++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999874
No 401
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.83 E-value=0.2 Score=51.95 Aligned_cols=87 Identities=21% Similarity=0.151 Sum_probs=50.3
Q ss_pred cCEEEEeecCCCchHHHH-HHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccC--------CCCc-----
Q 037613 182 APLLAIWGIGGIGKTTIA-RATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRD--------ESMI----- 247 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA-~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~--------~~~~----- 247 (553)
-..++|.|..|+|||+|| ..++++.. -+..+.+..+++-. ..+..+.+.+...-... ..+.
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~~~--~dv~~V~~~iGeR~---~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~ 236 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQKG--QDVICIYVAIGQKQ---STVAGVVETLRQHDALDYTIVVTASASEPAPLLY 236 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGGGS--CSEEEEEEEESCCH---HHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHH
T ss_pred CCEEEEECCCCCCchHHHHHHHHHhhc--CCcEEEEEECCCcc---hHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHH
Confidence 668999999999999996 57777653 34443444344322 33555666655421111 1111
Q ss_pred ---ccHHHHHHHh--cCCCeEEEEcCCCChH
Q 037613 248 ---PDIDLHFKRL--SRRKVLVVFDDVTCFN 273 (553)
Q Consensus 248 ---~~~~~l~~~L--~~kr~LlVLDdv~~~~ 273 (553)
...-.+.+++ .++.+||++||+....
T Consensus 237 ~a~~~a~tiAEyfrd~G~dVLl~~Dsltr~A 267 (502)
T 2qe7_A 237 LAPYAGCAMGEYFMYKGKHALVVYDDLSKQA 267 (502)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecHHHHH
Confidence 0112233444 4789999999986543
No 402
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.80 E-value=0.077 Score=58.73 Aligned_cols=46 Identities=22% Similarity=0.356 Sum_probs=36.2
Q ss_pred CCccchhhhHhhHHhhccc---------------cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 163 DRLVGVESRVVAIESLLSA---------------APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~---------------~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
..+.|.++..++|.+.+.. .+-+.++|++|.|||.||++++++...
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~ 537 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC
Confidence 4567888877777765432 456889999999999999999997644
No 403
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=92.77 E-value=0.15 Score=52.95 Aligned_cols=88 Identities=17% Similarity=0.124 Sum_probs=50.8
Q ss_pred cCEEEEeecCCCchHHHH-HHHHhhhcC------CCCceEEEEechhhhcccCCHHHHHHHHHHhhcc--------CCCC
Q 037613 182 APLLAIWGIGGIGKTTIA-RATFDKISS------DFEGSCFLENVREESQRLGGLACLRQKLLSNLFR--------DESM 246 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA-~~v~~~~~~------~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~--------~~~~ 246 (553)
-..++|.|..|+|||+|| ..++++... +-+..+.+..+++-. ..+..+.+.+...=.. ...+
T Consensus 162 GQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~---~Ev~~~~~~~~~~g~m~~tvvV~atad~ 238 (510)
T 2ck3_A 162 GQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKR---STVAQLVKRLTDADAMKYTIVVSATASD 238 (510)
T ss_dssp TCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCH---HHHHHHHHHHHHTTCGGGEEEEEECTTS
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCc---HHHHHHHHHHHhcCCcccceEEEECCCC
Confidence 668999999999999995 577776552 244444444444332 3355566665542110 1111
Q ss_pred c--------ccHHHHHHHh--cCCCeEEEEcCCCCh
Q 037613 247 I--------PDIDLHFKRL--SRRKVLVVFDDVTCF 272 (553)
Q Consensus 247 ~--------~~~~~l~~~L--~~kr~LlVLDdv~~~ 272 (553)
. ...-.+.+++ .++.+||++||+...
T Consensus 239 p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 274 (510)
T 2ck3_A 239 AAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQ 274 (510)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHH
Confidence 1 1112233444 478999999998654
No 404
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.76 E-value=0.052 Score=53.37 Aligned_cols=27 Identities=37% Similarity=0.584 Sum_probs=23.0
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
.++|+|+|=|||||||.|.-++--+..
T Consensus 48 aKVIAIaGKGGVGKTTtavNLA~aLA~ 74 (314)
T 3fwy_A 48 AKVFAVYGKGGIGKSTTSSNLSAAFSI 74 (314)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCccCHHHHHHHHHHHHHH
Confidence 789999999999999999877765443
No 405
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.72 E-value=0.056 Score=50.82 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=22.4
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..+++|+|+.|+|||||.+.++.-+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5799999999999999999998743
No 406
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.69 E-value=0.27 Score=48.47 Aligned_cols=36 Identities=14% Similarity=0.246 Sum_probs=27.7
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC------CCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD------FEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~------F~~~~~~~ 217 (553)
..++.|+|.+|+||||||..++...... -..++|+.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 6799999999999999999998754322 23456665
No 407
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.67 E-value=0.07 Score=48.75 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=23.5
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
.+|.|.|+.|+||||+|+.+++++.-
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 58999999999999999999998653
No 408
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.64 E-value=0.049 Score=60.55 Aligned_cols=44 Identities=16% Similarity=0.238 Sum_probs=35.8
Q ss_pred CCccchhhhHhhHHhhccc-----------cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 163 DRLVGVESRVVAIESLLSA-----------APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~-----------~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..++|.+..++.+...+.. ...+.++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 3578998888877776543 1268999999999999999999976
No 409
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.62 E-value=0.056 Score=51.68 Aligned_cols=35 Identities=26% Similarity=0.336 Sum_probs=26.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..+++|+|+.|+|||||.+.++.-... ..+.+++.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~~p-~~G~i~~~ 66 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLEKP-SEGAIIVN 66 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEEC
Confidence 579999999999999999999875432 24455553
No 410
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.61 E-value=0.056 Score=52.05 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=27.0
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..+++|+|+.|+|||||.+.++--+.. ..+.+++.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~~p-~~G~I~~~ 68 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGILKP-SSGRILFD 68 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCC-CCeEEEEC
Confidence 579999999999999999999875432 34555553
No 411
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.59 E-value=0.072 Score=50.44 Aligned_cols=34 Identities=26% Similarity=0.354 Sum_probs=27.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..+++|+|+.|+|||||.+.++.-.... +.+++.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~p~--G~i~~~ 59 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTSGK--GSIQFA 59 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCE--EEEEET
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCC--eEEEEC
Confidence 5689999999999999999999866554 556654
No 412
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.59 E-value=0.068 Score=50.04 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=22.6
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..+|+|.|+.|+||||+++.++.+.
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999865
No 413
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.58 E-value=0.17 Score=52.40 Aligned_cols=36 Identities=14% Similarity=0.247 Sum_probs=27.6
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCC-ceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFE-GSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~~ 217 (553)
..++.|.|.+|+||||||..++..+...-. .++|+.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 679999999999999999999986553222 345554
No 414
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.54 E-value=0.065 Score=54.98 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=22.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..+|.|+|++|+||||+|+.++.+.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhc
Confidence 6789999999999999999998864
No 415
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.53 E-value=0.1 Score=48.80 Aligned_cols=36 Identities=28% Similarity=0.204 Sum_probs=25.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh-cCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI-SSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~-~~~F~~~~~~~ 217 (553)
..++.|.|.+|+||||||.+++... ...-..++++.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 6799999999999999999876543 22223344443
No 416
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.53 E-value=0.3 Score=44.92 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=24.9
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCC-CCc
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSD-FEG 212 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-F~~ 212 (553)
..|.|.|+.|+||||+++.+.+.+... ++.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v 37 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEV 37 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCc
Confidence 478999999999999999999977654 443
No 417
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.53 E-value=0.18 Score=52.30 Aligned_cols=87 Identities=22% Similarity=0.146 Sum_probs=50.5
Q ss_pred cCEEEEeecCCCchHHHH-HHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhcc--------CCCCc-----
Q 037613 182 APLLAIWGIGGIGKTTIA-RATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFR--------DESMI----- 247 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA-~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~--------~~~~~----- 247 (553)
-..++|.|..|+|||+|| ..++++.. -+..+.+..+++-. ..+..+.+.+...=.. ...+.
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~~~--~dv~~V~~~IGeR~---~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~ 249 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQKG--QGVYCIYVAIGQKK---SAIARIIDKLRQYGAMEYTTVVVASASDPASLQY 249 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTTTT--TTEEEEEEEESCCH---HHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHhhc--CCcEEEEEEcCCCc---HHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHH
Confidence 678999999999999996 57777653 34443444344322 3355566666542111 11111
Q ss_pred ---ccHHHHHHHh--cCCCeEEEEcCCCChH
Q 037613 248 ---PDIDLHFKRL--SRRKVLVVFDDVTCFN 273 (553)
Q Consensus 248 ---~~~~~l~~~L--~~kr~LlVLDdv~~~~ 273 (553)
...-.+.+++ +++.+||++||+....
T Consensus 250 ~a~~~a~tiAEyfrd~G~dVLli~DslTr~A 280 (515)
T 2r9v_A 250 IAPYAGCAMGEYFAYSGRDALVVYDDLSKHA 280 (515)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEETHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEeccHHHHH
Confidence 1112233444 4789999999986543
No 418
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.53 E-value=0.1 Score=49.40 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.6
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..++.+.|.||+||||++..++....
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 46788899999999999999987655
No 419
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.50 E-value=0.059 Score=51.62 Aligned_cols=35 Identities=34% Similarity=0.526 Sum_probs=27.5
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..+++|+|+.|+|||||++.++.-+.. ..+.+++.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~I~~~ 71 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLSP-SHGECHLL 71 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSCC-SSCEEEET
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCC-CCcEEEEC
Confidence 679999999999999999999875433 24556664
No 420
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.49 E-value=0.06 Score=50.71 Aligned_cols=35 Identities=23% Similarity=0.391 Sum_probs=26.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..+++|+|+.|+|||||.+.++--... ..+.+++.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~ 66 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLVRA-QKGKIIFN 66 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEEC
Confidence 569999999999999999999875432 24455553
No 421
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.47 E-value=0.057 Score=49.88 Aligned_cols=34 Identities=24% Similarity=0.447 Sum_probs=26.2
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFL 216 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 216 (553)
..+++|+|+.|+|||||.+.++.-... ..+.+++
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~p-~~G~I~~ 68 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLKP-LKGEIIY 68 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEE
Confidence 568999999999999999999875432 2344555
No 422
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.43 E-value=0.066 Score=50.78 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=26.5
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh-cCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI-SSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~-~~~F~~~~~~~ 217 (553)
..+++|+|+.|+|||||.+.++.-. .....+.+++.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~ 65 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLD 65 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEEC
Confidence 5799999999999999999998742 11223455553
No 423
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=92.43 E-value=0.055 Score=58.23 Aligned_cols=44 Identities=16% Similarity=0.051 Sum_probs=34.6
Q ss_pred CCccchhhhHhhHHhhccccC-------------EEEEeecCCCchHHHHHHHHhhh
Q 037613 163 DRLVGVESRVVAIESLLSAAP-------------LLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 163 ~~~vGr~~~~~~l~~~L~~~~-------------vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
+.++|.+...+.+...|.... -|.++|++|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 568999887776655554421 58999999999999999998754
No 424
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.41 E-value=0.061 Score=51.21 Aligned_cols=35 Identities=26% Similarity=0.391 Sum_probs=27.0
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..+++|+|+.|+|||||.+.++.-+.. ..+.+++.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~~p-~~G~i~~~ 67 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFLKA-DEGRVYFE 67 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEEC
Confidence 569999999999999999999875432 24455553
No 425
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.41 E-value=0.063 Score=48.65 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=22.1
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.+.|.|.|+.|+||||||.+++.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4578999999999999999998863
No 426
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.40 E-value=0.065 Score=50.05 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=22.6
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..+++|+|+.|+|||||.+.++.-+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5799999999999999999998754
No 427
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.37 E-value=0.075 Score=47.82 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.7
Q ss_pred CEEEEeecCCCchHHHHHHHHhh
Q 037613 183 PLLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
..|+|+|..|+|||||.+.+...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 428
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=92.35 E-value=0.015 Score=58.61 Aligned_cols=65 Identities=17% Similarity=0.231 Sum_probs=43.3
Q ss_pred cCCCCcEEEeecccCCCCCCCccccCCCCCCCCeeEEEecCCCCCC-----CCCCC-CCCCccEEEcCCCCcc
Q 037613 479 KMHKLRFLKFYNSINGDNRCKVSYLQESPGFAEVRFLHRHGYPLKS-----LPSNI-NQKKLVVIEMPHSNIQ 545 (553)
Q Consensus 479 ~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~L~~Lr~L~l~~~~l~~-----LP~~i-~L~~L~~L~l~~s~i~ 545 (553)
.+++||+|+|.+|.+.+. ....+-+...+++|++|+|+.|.+.. |+..+ ++++|+.|+|++|.|.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~--~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNV--VVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTHHH--HHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCCCchH--HHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 578899999987743321 01111111125689999998887765 67776 6889999999888764
No 429
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.34 E-value=0.066 Score=51.17 Aligned_cols=35 Identities=23% Similarity=0.276 Sum_probs=27.0
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..+++|+|+.|+|||||.+.++--+.. ..+.+++.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~~p-~~G~I~~~ 84 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLEDF-DEGEIIID 84 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEET
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCCC-CCcEEEEC
Confidence 569999999999999999999875432 24555553
No 430
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.33 E-value=0.1 Score=48.41 Aligned_cols=30 Identities=13% Similarity=0.017 Sum_probs=23.3
Q ss_pred EEEEeecCCCchHHHHHHHHhhhcCC-CCce
Q 037613 184 LLAIWGIGGIGKTTIARATFDKISSD-FEGS 213 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~~~~-F~~~ 213 (553)
.|.+.|.||+||||+|..++...... ++..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~ 38 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVM 38 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEE
Confidence 47788999999999999998865443 4443
No 431
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.30 E-value=0.092 Score=52.52 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=27.3
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..+++|+|+.|+||||+++.++..+... ...+.+.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l~ 191 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMA 191 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEEe
Confidence 4689999999999999999999866543 3445554
No 432
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.29 E-value=0.069 Score=51.15 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=26.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc-CCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS-SDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~ 217 (553)
..+++|+|+.|+|||||.+.++.-.. ....+.+++.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~ 82 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK 82 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEEC
Confidence 56999999999999999999987531 1123455553
No 433
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.27 E-value=0.066 Score=50.66 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=27.1
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..+++|+|+.|+|||||.+.++.-... ..+.+++.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~I~i~ 69 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQVLID 69 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEEC
Confidence 579999999999999999999875432 24555553
No 434
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.27 E-value=0.1 Score=51.60 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=23.7
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
..+++|+|+.|+||||+++.++..+..
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 569999999999999999999986544
No 435
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.25 E-value=0.066 Score=50.50 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=27.0
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..+++|+|+.|+|||||.+.++.-... ..+.+++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~ 62 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFYQP-TAGEITID 62 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSSCC-SBSCEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEEC
Confidence 568999999999999999999875432 34555553
No 436
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.25 E-value=0.15 Score=50.94 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=22.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+|+|+|.+|+|||||+..++....
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999887543
No 437
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=92.24 E-value=0.17 Score=51.79 Aligned_cols=88 Identities=15% Similarity=0.089 Sum_probs=50.5
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcC----------CCCceEEEEechhhhcccCCHHHHHHHHHHhh--c------cC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISS----------DFEGSCFLENVREESQRLGGLACLRQKLLSNL--F------RD 243 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~----------~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l--~------~~ 243 (553)
-..++|.|..|+|||+|+..+++.... +=+..+.+..+++-. ..+..+.+.+...= . ..
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~---~Ev~e~~~~l~~~g~~~rtvvv~~t 223 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQ---RELSYFIQEFERTGALSRSVLFLNK 223 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECH---HHHHHHHHHHHHTSGGGGEEEEEEE
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCch---HHHHHHHHHhhhcccccceEEEEEC
Confidence 567899999999999999999986443 112233333343322 23455555554321 0 00
Q ss_pred CCCc--------ccHHHHHHHhc---CCCeEEEEcCCCCh
Q 037613 244 ESMI--------PDIDLHFKRLS---RRKVLVVFDDVTCF 272 (553)
Q Consensus 244 ~~~~--------~~~~~l~~~L~---~kr~LlVLDdv~~~ 272 (553)
..+. ...-.+.++++ ++.+||++||+...
T Consensus 224 ~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr~ 263 (464)
T 3gqb_B 224 ADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTNY 263 (464)
T ss_dssp TTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHHH
Confidence 1111 11223445554 68899999999654
No 438
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.19 E-value=0.068 Score=50.85 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=26.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..+++|+|+.|+|||||.+.++--... ..+.+++.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~~p-~~G~I~~~ 75 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLIKP-SSGIVTVF 75 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEET
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEEC
Confidence 569999999999999999999875432 23455553
No 439
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.10 E-value=0.073 Score=50.76 Aligned_cols=34 Identities=29% Similarity=0.376 Sum_probs=27.6
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..+++|+|+.|+|||||.+.++.-+. . .+.+++.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~-~G~I~i~ 79 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFYD-A-EGDIKIG 79 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC-C-EEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC-C-CeEEEEC
Confidence 67999999999999999999998654 2 4666664
No 440
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.08 E-value=0.082 Score=49.34 Aligned_cols=27 Identities=22% Similarity=0.483 Sum_probs=23.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
...|.|.|+.|+||||+++.+++.+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 457999999999999999999997765
No 441
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.05 E-value=0.13 Score=45.93 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=21.3
Q ss_pred cCEEEEeecCCCchHHHHHHHHhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
...|+|+|.+|+|||||...+...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999998864
No 442
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.01 E-value=0.073 Score=51.12 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=27.3
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..+++|+|+.|+|||||.+.++.-+.. ..+.+++.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~~p-~~G~I~~~ 79 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLYQP-TGGKVLLD 79 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC-CCCEEEEC
Confidence 579999999999999999999875432 24555553
No 443
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.99 E-value=0.13 Score=49.00 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=22.9
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
++|+|.|-||+||||+|..++..+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~ 28 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM 28 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC
Confidence 578889999999999999999866543
No 444
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.96 E-value=0.086 Score=49.50 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=22.3
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhc
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..|.|.|..|+||||+++.+++.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998764
No 445
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.95 E-value=0.075 Score=50.88 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=26.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..+++|+|+.|+|||||.+.++--... ..+.+++.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~~p-~~G~I~~~ 67 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLIEP-TSGDVLYD 67 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEET
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC-CCcEEEEC
Confidence 579999999999999999999874432 24455553
No 446
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=91.95 E-value=0.26 Score=52.57 Aligned_cols=68 Identities=6% Similarity=-0.161 Sum_probs=40.8
Q ss_pred hhHhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCc
Q 037613 474 PNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSLPSNI-NQKKLVVIEMPHSNI 544 (553)
Q Consensus 474 ~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~LP~~i-~L~~L~~L~l~~s~i 544 (553)
+..+..+++|+.|++.++.... .....+..++ +.+|+.|++.++....+|..+ .+.+|++|+|++|.+
T Consensus 236 ~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l 305 (592)
T 3ogk_B 236 VGFFKAAANLEEFCGGSLNEDI---GMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL 305 (592)
T ss_dssp HHHHHHCTTCCEEEECBCCCCT---TCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCC
T ss_pred HHHHhhhhHHHhhccccccccc---chHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcC
Confidence 3556667777777776432111 1122333443 667777777766666777766 577777777777664
No 447
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.93 E-value=0.079 Score=53.55 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=22.2
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhc
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
++|+|.|+.|+||||||..++.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4789999999999999999998653
No 448
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.92 E-value=0.084 Score=51.49 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=22.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..+++|+|+.|+|||||++.+..-+
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 6799999999999999999998754
No 449
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.91 E-value=0.11 Score=50.46 Aligned_cols=28 Identities=29% Similarity=0.229 Sum_probs=23.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
..+++++|.+|+||||++..++......
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999865543
No 450
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.88 E-value=0.078 Score=50.36 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=22.4
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..+++|+|+.|+|||||.+.++.-+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5689999999999999999998744
No 451
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.88 E-value=0.077 Score=51.19 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=26.4
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFL 216 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 216 (553)
..+++|+|+.|+|||||.+.++.-+.. ..+.+++
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~~p-~~G~I~~ 80 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYEPA-TSGTVNL 80 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC-CCeEEEE
Confidence 569999999999999999999875432 2344555
No 452
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=91.86 E-value=0.019 Score=61.61 Aligned_cols=85 Identities=12% Similarity=0.101 Sum_probs=46.8
Q ss_pred cccccccccCCCccccccChhHhhcCCCCcEEEeecccCCCCCCCccccCCCCC-CCCeeEEEecCCCCCCCCC-----C
Q 037613 455 KSIEGICLDMSKANEIRLNPNTFVKMHKLRFLKFYNSINGDNRCKVSYLQESPG-FAEVRFLHRHGYPLKSLPS-----N 528 (553)
Q Consensus 455 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~~~~~~~~l~~lp~~i~-L~~Lr~L~l~~~~l~~LP~-----~ 528 (553)
++++.+.+..+..-........+.++++|+.|+|++|.+.+. +...++.... +.+|++|++++|. ..++. -
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~--~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l 206 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDV--SGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERL 206 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECC--CGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCc--chHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHH
Confidence 355555554432111111233455778888888887754432 3334544443 6778888887775 33331 1
Q ss_pred C-CCCCccEEEcCCC
Q 037613 529 I-NQKKLVVIEMPHS 542 (553)
Q Consensus 529 i-~L~~L~~L~l~~s 542 (553)
+ ++.+|++|+|++|
T Consensus 207 ~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 207 VTRCPNLKSLKLNRA 221 (594)
T ss_dssp HHHCTTCCEEECCTT
T ss_pred HHhCCCCcEEecCCC
Confidence 2 3577888888765
No 453
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=91.83 E-value=0.077 Score=48.85 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.6
Q ss_pred CEEEEeecCCCchHHHHHHHHhhh
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.+|+|.|+.|+||||+|+.+....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999998864
No 454
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.81 E-value=0.074 Score=47.43 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=19.4
Q ss_pred EEEEeecCCCchHHHHHHHHh
Q 037613 184 LLAIWGIGGIGKTTIARATFD 204 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (553)
-|+|+|.+|+|||||...+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999886
No 455
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.79 E-value=0.14 Score=45.85 Aligned_cols=24 Identities=29% Similarity=0.072 Sum_probs=20.4
Q ss_pred CEEEEeecCCCchHHHHHHHHhhh
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.++.|+|+.|+||||++..++.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999997777654
No 456
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.75 E-value=0.085 Score=47.70 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.4
Q ss_pred CEEEEeecCCCchHHHHHHHHhh
Q 037613 183 PLLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
..|+|+|..|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999874
No 457
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.74 E-value=0.091 Score=45.86 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=19.9
Q ss_pred CEEEEeecCCCchHHHHHHHHh
Q 037613 183 PLLAIWGIGGIGKTTIARATFD 204 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (553)
..|+|+|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3589999999999999999986
No 458
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.73 E-value=0.09 Score=53.00 Aligned_cols=25 Identities=28% Similarity=0.190 Sum_probs=22.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..+++|+|+.|+|||||++.++...
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 6799999999999999999999754
No 459
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.65 E-value=0.12 Score=50.32 Aligned_cols=28 Identities=36% Similarity=0.516 Sum_probs=23.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
.++|+|+|-||+||||+|..++..+...
T Consensus 41 ~~vI~v~~KGGvGKTT~a~nLA~~La~~ 68 (307)
T 3end_A 41 AKVFAVYGKGGIGKSTTSSNLSAAFSIL 68 (307)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHC
Confidence 5789999999999999999988865543
No 460
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.61 E-value=0.11 Score=46.18 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=21.2
Q ss_pred cCEEEEeecCCCchHHHHHHHHhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
..+.+|+|..|+|||||+.+++--
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998753
No 461
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.59 E-value=0.095 Score=48.79 Aligned_cols=24 Identities=33% Similarity=0.326 Sum_probs=21.7
Q ss_pred CEEEEeecCCCchHHHHHHHHhhh
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..+||.|++|+||||+|+.+++++
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998865
No 462
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.58 E-value=0.098 Score=45.02 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.3
Q ss_pred CEEEEeecCCCchHHHHHHHHhh
Q 037613 183 PLLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
+.|.++|.+|+|||||...+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998863
No 463
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=91.57 E-value=0.39 Score=49.65 Aligned_cols=86 Identities=17% Similarity=0.135 Sum_probs=48.7
Q ss_pred cCEEEEeecCCCchHHHH-HHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhccC--------CCCc-----
Q 037613 182 APLLAIWGIGGIGKTTIA-RATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLFRD--------ESMI----- 247 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA-~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~~~--------~~~~----- 247 (553)
-..++|.|..|+|||+|| ..+.++- +-+..+.+..+++-. ..+..+.+.+...=... ..+.
T Consensus 162 GQR~~Ifg~~g~GKT~l~l~~I~n~~--~~dv~~V~~~IGeR~---~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~ 236 (513)
T 3oaa_A 162 GQRELIIGDRQTGKTALAIDAIINQR--DSGIKCIYVAIGQKA---STISNVVRKLEEHGALANTIVVVATASESAALQY 236 (513)
T ss_dssp TCBCEEEESSSSSHHHHHHHHHHTTS--SSSCEEEEEEESCCH---HHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHH
T ss_pred CCEEEeecCCCCCcchHHHHHHHhhc--cCCceEEEEEecCCh---HHHHHHHHHHhhcCcccceEEEEECCCCChHHHH
Confidence 568899999999999996 5677753 334433333344322 33555666554421111 1111
Q ss_pred ---ccHHHHHHHh--cCCCeEEEEcCCCCh
Q 037613 248 ---PDIDLHFKRL--SRRKVLVVFDDVTCF 272 (553)
Q Consensus 248 ---~~~~~l~~~L--~~kr~LlVLDdv~~~ 272 (553)
.....+.+++ +++.+||++||+...
T Consensus 237 ~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 266 (513)
T 3oaa_A 237 LAPYAGCAMGEYFRDRGEDALIIYDDLSKQ 266 (513)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEecChHHH
Confidence 1111223333 478999999998654
No 464
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.50 E-value=0.1 Score=44.90 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=19.6
Q ss_pred EEEEeecCCCchHHHHHHHHhh
Q 037613 184 LLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
.|.++|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999998863
No 465
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.44 E-value=0.073 Score=49.65 Aligned_cols=24 Identities=29% Similarity=0.062 Sum_probs=21.7
Q ss_pred cCEEEEeecCCCchHHHHHHHHhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
..+|+|.|+.|+||||+++.++..
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 458999999999999999998876
No 466
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.34 E-value=0.22 Score=49.46 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=22.1
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..+|+|+|.+|+|||||+..+....
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999987643
No 467
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.25 E-value=0.11 Score=47.17 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.3
Q ss_pred cCEEEEeecCCCchHHHHHHHHh
Q 037613 182 APLLAIWGIGGIGKTTIARATFD 204 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~ 204 (553)
.-.|+|+|.+|+|||||...+.+
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 45689999999999999988875
No 468
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.23 E-value=0.084 Score=54.30 Aligned_cols=26 Identities=35% Similarity=0.395 Sum_probs=22.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+|.|+|.+|+||||+|..++....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999988654
No 469
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=91.22 E-value=1.1 Score=43.09 Aligned_cols=36 Identities=11% Similarity=0.071 Sum_probs=25.9
Q ss_pred cccHHHHHHHHhccceeEeecCCccchhhhHHHHHHH
Q 037613 27 KISQSLVNAIEASTISVIIFSEGYASSRWCLDELLKI 63 (553)
Q Consensus 27 ~~~~~~~~ai~~s~~~ivv~S~~y~~S~wcl~EL~~i 63 (553)
....++.+.++++.+.|.|+.-.-..+..+ .++...
T Consensus 12 ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~-~~l~~~ 47 (282)
T 1puj_A 12 KARREVTEKLKLIDIVYELVDARIPMSSRN-PMIEDI 47 (282)
T ss_dssp HHHHHHHHHGGGCSEEEEEEETTSTTTTSC-HHHHHH
T ss_pred HHHHHHHHHHhhCCEEEEEEeCCCCCccCC-HHHHHH
Confidence 355788999999999999998666555555 234443
No 470
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.21 E-value=0.14 Score=53.98 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=24.3
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
..+|.++|++|.||||+|+.+++.+.-.|
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 45889999999999999999998764444
No 471
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.17 E-value=0.1 Score=49.84 Aligned_cols=34 Identities=32% Similarity=0.530 Sum_probs=26.9
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..+++|+|+.|+|||||.+.++.-. ...+.+++.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~--p~~G~I~~~ 63 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL--PYSGNIFIN 63 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS--CCEEEEEET
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC--CCCcEEEEC
Confidence 4689999999999999999998765 334555553
No 472
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.15 E-value=0.33 Score=58.74 Aligned_cols=36 Identities=19% Similarity=0.373 Sum_probs=29.0
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
.+.|.|+|++|+|||+||.+++.....+=..+.|+.
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 789999999999999999999886554433456665
No 473
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.12 E-value=0.12 Score=49.67 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.6
Q ss_pred EEEEeecCCCchHHHHHHHHhhh
Q 037613 184 LLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
.++|+|..|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999743
No 474
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.11 E-value=0.39 Score=50.28 Aligned_cols=49 Identities=18% Similarity=0.134 Sum_probs=32.7
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHH
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLENVREESQRLGGLACLRQKL 236 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~l 236 (553)
-..++|.|..|+|||+|+..+++.-. -+.++++- +++ ....+..+.+.+
T Consensus 227 Gqr~~I~g~~g~GKT~L~~~ia~~~~--~~~~V~~~-iGE---R~~Ev~e~~~~~ 275 (588)
T 3mfy_A 227 GGTAAIPGPAGSGKTVTQHQLAKWSD--AQVVIYIG-CGE---RGNEMTDVLEEF 275 (588)
T ss_dssp TCEEEECSCCSHHHHHHHHHHHHHSS--CSEEEEEE-CCS---SSSHHHHHHHHT
T ss_pred CCeEEeecCCCCCHHHHHHHHHhccC--CCEEEEEE-ecc---cHHHHHHHHHHH
Confidence 67899999999999999999987532 23444443 333 223355555554
No 475
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.11 E-value=0.12 Score=45.96 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=20.1
Q ss_pred CEEEEeecCCCchHHHHHHHHh
Q 037613 183 PLLAIWGIGGIGKTTIARATFD 204 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~ 204 (553)
..|+++|.+|+|||||...+..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999986
No 476
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=91.09 E-value=0.67 Score=44.05 Aligned_cols=30 Identities=7% Similarity=-0.001 Sum_probs=23.6
Q ss_pred cccHHHHHHHHhccceeEeecCCccchhhh
Q 037613 27 KISQSLVNAIEASTISVIIFSEGYASSRWC 56 (553)
Q Consensus 27 ~~~~~~~~ai~~s~~~ivv~S~~y~~S~wc 56 (553)
....++.+.++++.+.|.|++-.-..+..+
T Consensus 10 ka~~~~~~~l~~~D~vl~VvDar~P~~~~~ 39 (262)
T 3cnl_A 10 KAKRQIKDLLRLVNTVVEVRDARAPFATSA 39 (262)
T ss_dssp CTTHHHHHHHTTCSEEEEEEETTSTTTTSC
T ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCcCcC
Confidence 355789999999999999998665555554
No 477
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.06 E-value=0.13 Score=57.91 Aligned_cols=44 Identities=23% Similarity=0.390 Sum_probs=36.1
Q ss_pred CccchhhhHhhHHhhccc-----------cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 164 RLVGVESRVVAIESLLSA-----------APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 164 ~~vGr~~~~~~l~~~L~~-----------~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
.++|.+..++.+...+.. ...+.|+|++|+|||++|+.+++...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 478999888888776644 14789999999999999999998764
No 478
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.03 E-value=0.12 Score=44.83 Aligned_cols=22 Identities=18% Similarity=0.416 Sum_probs=19.7
Q ss_pred EEEEeecCCCchHHHHHHHHhh
Q 037613 184 LLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
.|.|+|.+|+|||||...+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999998863
No 479
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=91.02 E-value=0.28 Score=50.89 Aligned_cols=87 Identities=14% Similarity=0.147 Sum_probs=48.8
Q ss_pred cCEEEEeecCCCchHHHH-HHHHhhhcCCCCceEEEEechhhhcccCCHHHHHHHHHHhhc--------cCCCCc-----
Q 037613 182 APLLAIWGIGGIGKTTIA-RATFDKISSDFEGSCFLENVREESQRLGGLACLRQKLLSNLF--------RDESMI----- 247 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA-~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~~l~~~ll~~l~--------~~~~~~----- 247 (553)
-..++|.|..|+|||+|| ..+++... -+..+.+..+++-. ..+..+.+.+...=. ....+.
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~~--~dv~~V~~~iGeR~---~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~ 237 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQG--QNVICVYVAIGQKA---SSVAQVVTNFQERGAMEYTIVVAETADSPATLQY 237 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCCT--TTCEEEEEEESCCH---HHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTT
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhhc--CCcEEEEEEcCCCc---hHHHHHHHHHHhcCccccceEEEECCCCCHHHHH
Confidence 567899999999999996 57777653 34444444344322 224455555443210 011110
Q ss_pred ---ccHHHHHHHh--cCCCeEEEEcCCCChH
Q 037613 248 ---PDIDLHFKRL--SRRKVLVVFDDVTCFN 273 (553)
Q Consensus 248 ---~~~~~l~~~L--~~kr~LlVLDdv~~~~ 273 (553)
...-.+.+++ .++.+||++||+....
T Consensus 238 ~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A 268 (507)
T 1fx0_A 238 LAPYTGAALAEYFMYRERHTLIIYDDLSKQA 268 (507)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecHHHHH
Confidence 1112223333 4789999999986543
No 480
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.00 E-value=0.14 Score=51.05 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=23.0
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..++.|+|..|+|||||+..++..+
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999998765
No 481
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.90 E-value=0.17 Score=48.91 Aligned_cols=26 Identities=35% Similarity=0.583 Sum_probs=22.3
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
++|+|.|-||+||||+|..++..+..
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~ 28 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAE 28 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHH
Confidence 57888999999999999999886554
No 482
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.90 E-value=0.12 Score=51.55 Aligned_cols=34 Identities=32% Similarity=0.332 Sum_probs=26.0
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFL 216 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 216 (553)
..+++|.|+.|+|||||.+.++--... ..+.+++
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~~p-~~G~I~i 63 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFEQP-DSGEISL 63 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSSCC-SEEEEEE
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCCC-CCcEEEE
Confidence 568999999999999999999974332 2344444
No 483
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.90 E-value=0.7 Score=44.89 Aligned_cols=25 Identities=20% Similarity=0.454 Sum_probs=21.8
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKI 206 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~ 206 (553)
..+++|+|+.|+|||||.+.+....
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccc
Confidence 3689999999999999999998643
No 484
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.88 E-value=0.17 Score=52.94 Aligned_cols=43 Identities=5% Similarity=-0.022 Sum_probs=30.5
Q ss_pred cchhhhHhhHHhhccc----cCEEEEeecCCCchHHHHHHHHhhhcC
Q 037613 166 VGVESRVVAIESLLSA----APLLAIWGIGGIGKTTIARATFDKISS 208 (553)
Q Consensus 166 vGr~~~~~~l~~~L~~----~~vi~I~G~gGiGKTtLA~~v~~~~~~ 208 (553)
..|.+-.+.+.+.... ..+|.+.|+.|+||||+|+++++++..
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3344444444444421 468899999999999999999998764
No 485
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.87 E-value=0.12 Score=50.06 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=22.0
Q ss_pred cCEEEEeecCCCchHHHHHHHHhh
Q 037613 182 APLLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
..+++|+|+.|+|||||.+.++.-
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 579999999999999999999864
No 486
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.87 E-value=0.12 Score=46.06 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=19.8
Q ss_pred EEEEeecCCCchHHHHHHHHhh
Q 037613 184 LLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
.|.++|.+|+|||||+..+...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 487
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=90.85 E-value=0.19 Score=47.87 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=26.3
Q ss_pred hhHHhhccc----cCEEEEeecCCCchHHHHHHHHhh
Q 037613 173 VAIESLLSA----APLLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 173 ~~l~~~L~~----~~vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
.-+..+|.. ...+.++|++|.|||.+|.++++.
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 345566655 236999999999999999999984
No 488
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=90.80 E-value=0.27 Score=50.95 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=28.3
Q ss_pred hHhhHHhhccc-cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 171 RVVAIESLLSA-APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 171 ~~~~l~~~L~~-~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
.+..+...+.. .+.+.|.|.+|+||||++.++...+...
T Consensus 33 av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 33 AFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 33444444433 4599999999999999999998865444
No 489
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.77 E-value=0.09 Score=51.37 Aligned_cols=35 Identities=31% Similarity=0.395 Sum_probs=26.5
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFLE 217 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 217 (553)
..+++|+|+.|+|||||++.+..-+.. ..+.+.+.
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~~p-~~G~I~i~ 114 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFYDI-SSGCIRID 114 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSSCC-SEEEEEET
T ss_pred CCEEEEECCCCchHHHHHHHHHcCCCC-CCcEEEEC
Confidence 679999999999999999998864332 23455553
No 490
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.56 E-value=0.14 Score=45.07 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.9
Q ss_pred EEEEeecCCCchHHHHHHHHhh
Q 037613 184 LLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
.|+|+|.+|+|||||...+...
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999863
No 491
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=90.55 E-value=0.13 Score=44.96 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=19.3
Q ss_pred EEEEeecCCCchHHHHHHHHh
Q 037613 184 LLAIWGIGGIGKTTIARATFD 204 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (553)
-|+|+|.+|+|||||...+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 589999999999999999876
No 492
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=90.47 E-value=0.14 Score=44.18 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=19.3
Q ss_pred EEEEeecCCCchHHHHHHHHh
Q 037613 184 LLAIWGIGGIGKTTIARATFD 204 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (553)
-|+++|.+|+|||||...+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 588999999999999999886
No 493
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.47 E-value=0.092 Score=50.05 Aligned_cols=26 Identities=19% Similarity=0.090 Sum_probs=22.7
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
...|.|.|..|+||||+|+.+++.+.
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999888753
No 494
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=90.40 E-value=0.14 Score=47.51 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=23.2
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhc
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKIS 207 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 207 (553)
..+|+|.|+.|+||||+|+.+++++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 35899999999999999999998764
No 495
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=90.40 E-value=0.19 Score=52.36 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=24.3
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDF 210 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F 210 (553)
..+|.++|++|+||||+|+.+++.....|
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 35789999999999999999998765444
No 496
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.40 E-value=0.14 Score=51.25 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=26.1
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCCCCceEEE
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSDFEGSCFL 216 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 216 (553)
..+++|+|+.|+|||||.+.+.--... -.+.+++
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~~p-~~G~I~i 87 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLV 87 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCC-SEEEEEE
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCCCC-CceEEEE
Confidence 579999999999999999998874332 2344555
No 497
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.38 E-value=0.22 Score=50.96 Aligned_cols=28 Identities=29% Similarity=0.229 Sum_probs=24.2
Q ss_pred cCEEEEeecCCCchHHHHHHHHhhhcCC
Q 037613 182 APLLAIWGIGGIGKTTIARATFDKISSD 209 (553)
Q Consensus 182 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 209 (553)
..+++++|.+|+||||++..++..+...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999866554
No 498
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.34 E-value=0.14 Score=44.37 Aligned_cols=21 Identities=29% Similarity=0.669 Sum_probs=19.3
Q ss_pred EEEEeecCCCchHHHHHHHHh
Q 037613 184 LLAIWGIGGIGKTTIARATFD 204 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~ 204 (553)
.|.|+|.+|+|||||...+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999886
No 499
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.33 E-value=0.15 Score=45.24 Aligned_cols=22 Identities=18% Similarity=0.216 Sum_probs=19.6
Q ss_pred EEEEeecCCCchHHHHHHHHhh
Q 037613 184 LLAIWGIGGIGKTTIARATFDK 205 (553)
Q Consensus 184 vi~I~G~gGiGKTtLA~~v~~~ 205 (553)
-|.|+|.+|+|||||...+...
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998863
No 500
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.28 E-value=0.39 Score=44.17 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=26.0
Q ss_pred CEEEEeecCCCchHHHHHHHHhhhcCC-CCceEEE
Q 037613 183 PLLAIWGIGGIGKTTIARATFDKISSD-FEGSCFL 216 (553)
Q Consensus 183 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~ 216 (553)
..|.+.|+.|+||||+++.+++.+... +..+.+.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence 478999999999999999999876543 4333333
Done!