Query 037616
Match_columns 383
No_of_seqs 204 out of 1260
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 02:45:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037616.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037616hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 2E-124 4E-129 887.0 27.7 376 1-383 1-376 (443)
2 PLN00221 tubulin alpha chain; 100.0 4E-104 8E-109 800.5 28.3 383 1-383 1-383 (450)
3 PTZ00335 tubulin alpha chain; 100.0 5E-103 1E-107 791.8 29.1 383 1-383 1-383 (448)
4 cd02186 alpha_tubulin The tubu 100.0 1.6E-99 3E-104 765.4 28.0 382 2-383 1-382 (434)
5 PTZ00010 tubulin beta chain; P 100.0 1.4E-99 3E-104 767.3 27.4 373 1-383 1-373 (445)
6 cd02188 gamma_tubulin Gamma-tu 100.0 2.2E-99 5E-104 762.0 26.7 374 2-383 1-379 (431)
7 PLN00222 tubulin gamma chain; 100.0 3.8E-99 8E-104 764.1 27.1 375 1-383 2-385 (454)
8 PTZ00387 epsilon tubulin; Prov 100.0 5.5E-98 1E-102 756.2 27.9 363 1-383 1-398 (465)
9 PLN00220 tubulin beta chain; P 100.0 6.5E-98 1E-102 756.7 27.2 373 1-383 1-373 (447)
10 cd02187 beta_tubulin The tubul 100.0 2.7E-97 6E-102 747.8 28.1 372 2-383 1-372 (425)
11 KOG1374 Gamma tubulin [Cytoske 100.0 2.4E-95 5E-100 689.7 24.0 375 1-383 2-384 (448)
12 cd02189 delta_tubulin The tubu 100.0 7.7E-89 1.7E-93 689.8 27.4 362 4-383 2-395 (446)
13 cd02190 epsilon_tubulin The tu 100.0 1.3E-88 2.9E-93 675.0 24.7 327 2-383 1-327 (379)
14 KOG1376 Alpha tubulin [Cytoske 100.0 1.8E-85 3.9E-90 620.6 15.1 360 1-383 1-360 (407)
15 cd06059 Tubulin The tubulin su 100.0 7E-80 1.5E-84 615.3 25.6 331 3-383 1-331 (382)
16 cd00286 Tubulin_FtsZ Tubulin/F 100.0 1.7E-71 3.6E-76 545.0 25.1 328 3-381 1-328 (328)
17 KOG1375 Beta tubulin [Cytoskel 100.0 1.9E-58 4.2E-63 438.6 9.7 291 45-383 7-297 (369)
18 PF00091 Tubulin: Tubulin/FtsZ 100.0 6.6E-55 1.4E-59 403.6 11.0 216 3-226 1-216 (216)
19 smart00864 Tubulin Tubulin/Fts 100.0 5E-40 1.1E-44 298.8 10.0 185 51-246 3-192 (192)
20 cd06060 misato Human Misato sh 100.0 1.3E-38 2.8E-43 323.5 21.2 306 2-323 1-347 (493)
21 cd02202 FtsZ_type2 FtsZ is a G 100.0 1E-35 2.2E-40 292.9 15.0 227 1-273 1-234 (349)
22 cd02191 FtsZ FtsZ is a GTPase 100.0 7.8E-31 1.7E-35 253.7 14.4 272 1-338 1-274 (303)
23 cd02201 FtsZ_type1 FtsZ is a G 100.0 1.1E-28 2.4E-33 239.4 12.6 271 4-338 3-275 (304)
24 TIGR00065 ftsZ cell division p 100.0 1.7E-28 3.8E-33 241.0 13.4 272 4-338 20-294 (349)
25 PF03953 Tubulin_C: Tubulin C- 100.0 5.4E-29 1.2E-33 211.4 8.1 116 263-383 1-116 (126)
26 KOG2530 Members of tubulin/Fts 99.9 1E-27 2.2E-32 233.2 12.9 240 1-257 1-324 (483)
27 PRK13018 cell division protein 99.9 1.1E-26 2.4E-31 229.3 13.8 269 4-338 31-301 (378)
28 PRK09330 cell division protein 99.9 7.2E-25 1.6E-29 216.7 12.0 273 3-338 15-288 (384)
29 PF14881 Tubulin_3: Tubulin do 99.8 2.3E-19 4.9E-24 161.0 10.4 117 116-244 57-180 (180)
30 COG0206 FtsZ Cell division GTP 99.6 2.1E-15 4.6E-20 146.5 11.9 206 4-261 14-219 (338)
31 PF10644 Misat_Tub_SegII: Misa 99.1 4E-11 8.7E-16 100.1 4.6 64 2-73 1-68 (115)
32 smart00865 Tubulin_C Tubulin/F 98.9 9.7E-10 2.1E-14 91.4 4.5 92 248-352 1-96 (120)
33 PF13809 Tubulin_2: Tubulin li 98.0 0.00011 2.4E-09 72.8 13.6 104 93-197 99-220 (345)
34 PLN02847 triacylglycerol lipas 83.7 4.7 0.0001 42.7 8.3 115 50-170 154-287 (633)
35 cd00741 Lipase Lipase. Lipase 71.9 6.2 0.00013 33.8 4.4 53 105-161 1-53 (153)
36 cd00519 Lipase_3 Lipase (class 69.4 4.7 0.0001 37.1 3.3 75 100-179 96-170 (229)
37 PRK14484 phosphotransferase ma 66.9 5.1 0.00011 33.8 2.7 41 116-160 42-83 (124)
38 PF03610 EIIA-man: PTS system 66.8 7.6 0.00017 31.8 3.7 33 114-146 39-71 (116)
39 PF01764 Lipase_3: Lipase (cla 65.2 4.4 9.6E-05 33.8 2.1 56 104-163 35-91 (140)
40 PF12953 DUF3842: Domain of un 61.7 7.8 0.00017 32.9 2.8 50 144-207 7-57 (131)
41 PF06908 DUF1273: Protein of u 56.2 31 0.00067 30.9 5.9 85 114-207 27-111 (177)
42 cd00006 PTS_IIA_man PTS_IIA, P 53.3 20 0.00043 29.7 4.0 31 115-145 40-70 (122)
43 TIGR00824 EIIA-man PTS system, 51.9 23 0.00049 29.3 4.1 32 115-146 41-72 (116)
44 PF01713 Smr: Smr domain; Int 47.8 74 0.0016 24.2 6.2 53 116-171 9-67 (83)
45 PTZ00010 tubulin beta chain; P 43.3 11 0.00023 38.9 1.0 69 4-72 135-206 (445)
46 PRK09461 ansA cytoplasmic aspa 42.7 56 0.0012 32.3 5.9 73 110-188 63-136 (335)
47 PRK13660 hypothetical protein; 40.7 1.1E+02 0.0024 27.5 7.0 108 114-239 27-134 (182)
48 PLN02408 phospholipase A1 39.4 57 0.0012 32.7 5.4 63 113-179 179-243 (365)
49 PF00710 Asparaginase: Asparag 38.7 82 0.0018 30.8 6.3 91 110-207 54-145 (313)
50 COG0572 Udk Uridine kinase [Nu 37.3 38 0.00083 31.4 3.5 27 137-164 9-35 (218)
51 TIGR02364 dha_pts dihydroxyace 37.0 32 0.00069 29.0 2.7 41 116-159 42-84 (125)
52 PF08259 Periviscerokin: Periv 35.8 16 0.00035 17.4 0.4 9 257-265 3-11 (11)
53 cd00411 Asparaginase Asparagin 35.4 87 0.0019 30.7 5.9 92 110-209 60-154 (323)
54 TIGR00177 molyb_syn molybdenum 31.0 70 0.0015 27.3 4.0 42 112-160 50-91 (144)
55 COG1929 Glycerate kinase [Carb 29.5 93 0.002 31.1 4.9 102 91-210 196-301 (378)
56 COG3969 Predicted phosphoadeno 29.1 1.7E+02 0.0037 29.2 6.5 49 110-163 8-56 (407)
57 TIGR00262 trpA tryptophan synt 29.0 1.4E+02 0.0031 28.2 6.0 75 120-213 154-234 (256)
58 cd00758 MoCF_BD MoCF_BD: molyb 29.0 77 0.0017 26.5 3.9 41 112-159 42-82 (133)
59 COG0303 MoeA Molybdopterin bio 28.8 1.4E+02 0.003 30.5 6.2 61 108-175 222-282 (404)
60 PF03141 Methyltransf_29: Puta 28.5 1E+02 0.0023 32.1 5.3 50 113-175 100-149 (506)
61 smart00852 MoCF_biosynth Proba 28.2 66 0.0014 26.9 3.3 43 112-161 41-83 (135)
62 cd00885 cinA Competence-damage 28.2 95 0.0021 27.4 4.4 43 112-161 42-84 (170)
63 PF02353 CMAS: Mycolic acid cy 27.8 84 0.0018 30.1 4.3 64 101-171 29-93 (273)
64 PF09370 TIM-br_sig_trns: TIM- 27.8 34 0.00073 32.7 1.5 33 117-157 2-34 (268)
65 PF03283 PAE: Pectinacetyleste 26.8 1.8E+02 0.004 29.0 6.6 50 107-163 132-183 (361)
66 CHL00200 trpA tryptophan synth 26.4 1.6E+02 0.0034 28.1 5.8 74 120-213 158-238 (263)
67 TIGR02153 gatD_arch glutamyl-t 26.4 1.6E+02 0.0035 30.0 6.2 91 110-207 120-211 (404)
68 smart00870 Asparaginase Aspara 26.2 1.6E+02 0.0034 28.9 6.0 75 110-188 57-132 (323)
69 PTZ00489 glutamate 5-kinase; P 26.0 2.2E+02 0.0048 27.1 6.8 48 157-206 87-134 (264)
70 PRK09417 mogA molybdenum cofac 25.8 98 0.0021 28.1 4.1 45 110-161 46-92 (193)
71 PLN02802 triacylglycerol lipas 25.6 1.2E+02 0.0026 31.8 5.1 63 113-179 309-373 (509)
72 PF02879 PGM_PMM_II: Phosphogl 25.5 43 0.00094 26.6 1.6 27 133-159 20-46 (104)
73 TIGR00519 asnASE_I L-asparagin 25.5 1.4E+02 0.0031 29.4 5.6 73 110-189 59-132 (336)
74 COG0159 TrpA Tryptophan syntha 24.5 2E+02 0.0042 27.6 6.0 79 120-217 161-244 (265)
75 COG4962 CpaF Flp pilus assembl 24.4 57 0.0012 32.5 2.5 41 117-164 161-201 (355)
76 PRK09932 glycerate kinase II; 24.0 1.2E+02 0.0026 30.6 4.7 104 88-209 193-300 (381)
77 PRK15088 PTS system mannose-sp 22.7 1.1E+02 0.0023 30.2 4.1 33 114-146 41-73 (322)
78 TIGR00045 glycerate kinase. Th 22.6 1.5E+02 0.0033 29.9 5.1 105 87-209 191-299 (375)
79 COG2267 PldB Lysophospholipase 22.2 86 0.0019 30.3 3.3 49 96-144 69-119 (298)
80 KOG1252 Cystathionine beta-syn 21.6 52 0.0011 32.6 1.6 42 102-155 193-235 (362)
81 KOG3178 Hydroxyindole-O-methyl 21.5 1.6E+02 0.0034 29.4 4.8 41 124-169 167-207 (342)
82 PRK10680 molybdopterin biosynt 21.3 1.5E+02 0.0033 30.2 5.0 57 111-175 226-282 (411)
83 TIGR01732 tiny_TM_bacill conse 21.2 64 0.0014 19.5 1.3 13 142-154 1-13 (26)
84 COG0031 CysK Cysteine synthase 20.9 47 0.001 32.4 1.1 59 99-174 147-205 (300)
85 PRK01215 competence damage-ind 20.9 1.7E+02 0.0037 27.9 4.9 44 112-162 46-89 (264)
86 PRK13929 rod-share determining 20.6 1.4E+02 0.0031 29.1 4.5 45 113-163 253-304 (335)
87 cd00886 MogA_MoaB MogA_MoaB fa 20.4 1.2E+02 0.0027 26.0 3.6 41 112-159 43-85 (152)
88 PRK04183 glutamyl-tRNA(Gln) am 20.3 2.4E+02 0.0051 28.9 6.1 90 110-207 133-223 (419)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=1.9e-124 Score=886.97 Aligned_cols=376 Identities=60% Similarity=1.054 Sum_probs=365.7
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeccccc
Q 037616 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (383)
Q Consensus 1 MrEii~iqvGqcGnqIG~~~w~~~~~eh~~~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRailiD~e~~~i~~i~~ 80 (383)
|||||+||+||||||||++||+++|+||||.++|.+....+ ...++.++||+|+++|||+||||+||+||+|||.++.
T Consensus 1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~--~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~ 78 (443)
T COG5023 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSD--EGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRN 78 (443)
T ss_pred CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcc--cccccccceeeecCCCccccceEEEecCcchHhhhcc
Confidence 99999999999999999999999999999999999766544 3568999999999999999999999999999999999
Q ss_pred ccccccCCcccccccCcccccCCCccccccchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhh
Q 037616 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (383)
Q Consensus 81 ~~~~~l~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~ 160 (383)
++|+.+|+|+++++|++|||||||+|+|++|+++.|+++|.|||++|.||.||||+++||+|||||||+|+.|+|+|++|
T Consensus 79 g~y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~e 158 (443)
T COG5023 79 GPYGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREE 158 (443)
T ss_pred CccccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcceeEEEEecCCCCCCccchhhhHHHhHHhhhhccccceecChHHHHhhhhccCCCCCCChhhHHHHHHHHHhcccc
Q 037616 161 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240 (383)
Q Consensus 161 yp~~~i~~~~v~P~~~~~~~~v~~yNa~lsl~~l~~~~d~vi~~dN~~L~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~ 240 (383)
||||.+.+|+|+|.++.+++||||||++|++++|.|++|+++++||++|+++|.+.|++++|+|.++|++||++|+++|+
T Consensus 159 ypkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTt 238 (443)
T COG5023 159 YPKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTT 238 (443)
T ss_pred cchhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhccCCccCCccceeccccccccccccccccccCHHHHHHHhcCCCCCccccCCCCCcccccccccc
Q 037616 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 320 (383)
Q Consensus 241 ~~r~~g~~n~dl~~l~~nLvp~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 320 (383)
++||||++|.||.+|.+|||||||+||+.++|+|+++..+..+++.++.|+++++|++.|+|++|||++|+|+++++++|
T Consensus 239 slRfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~r 318 (443)
T COG5023 239 SLRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFR 318 (443)
T ss_pred eeecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHhhhcccccceeecCCCCceeeeeccCCccCCCCCccceeeeEEEecccCC
Q 037616 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTS 383 (383)
Q Consensus 321 G~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~ 383 (383)
|+++++||++++.++|.|++++||+|+|++||+++|+.+|. ..++.++|+|||+|+||
T Consensus 319 G~v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~-----~~~~~~~s~~~lsNtTs 376 (443)
T COG5023 319 GDVDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPS-----EPAEVDVSGCMLSNTTS 376 (443)
T ss_pred cCCCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCc-----ccccceeeeEeecCcHH
Confidence 99999999999999999999999999999999999999983 34566799999999996
No 2
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=3.7e-104 Score=800.50 Aligned_cols=383 Identities=98% Similarity=1.513 Sum_probs=365.0
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeccccc
Q 037616 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (383)
Q Consensus 1 MrEii~iqvGqcGnqIG~~~w~~~~~eh~~~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRailiD~e~~~i~~i~~ 80 (383)
|||||+|||||||||||.+||+++|+||+++++|+.......+...+++++||+|+.+++|+|||||||+||++|++++.
T Consensus 1 m~EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (450)
T PLN00221 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhcc
Confidence 99999999999999999999999999999999997644322112346789999999999999999999999999999999
Q ss_pred ccccccCCcccccccCcccccCCCccccccchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhh
Q 037616 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (383)
Q Consensus 81 ~~~~~l~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~ 160 (383)
++++++|+|++++.+++|+|||||+|||+.|+++.|+++|+|||++|+||++|||+++||+|||||||+|++|+|+|+|+
T Consensus 81 ~~~~~lf~~~~~i~~~~gagNnwa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~ 160 (450)
T PLN00221 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (450)
T ss_pred CccccccCccceeccCCCccccccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcceeEEEEecCCCCCCccchhhhHHHhHHhhhhccccceecChHHHHhhhhccCCCCCCChhhHHHHHHHHHhcccc
Q 037616 161 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240 (383)
Q Consensus 161 yp~~~i~~~~v~P~~~~~~~~v~~yNa~lsl~~l~~~~d~vi~~dN~~L~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~ 240 (383)
|||+.+.+++|+|++..++++++|||++|+|++|.+++|++++|||++|+++|.+.++++.|+|++||++||++|+++|+
T Consensus 161 y~~~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~p~~~dlN~lIa~~is~~T~ 240 (450)
T PLN00221 161 YGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTA 240 (450)
T ss_pred cccccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccc
Confidence 99999999999999877889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhccCCccCCccceeccccccccccccccccccCHHHHHHHhcCCCCCccccCCCCCcccccccccc
Q 037616 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 320 (383)
Q Consensus 241 ~~r~~g~~n~dl~~l~~nLvp~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 320 (383)
++||||.++.||+++++||||||++||++++++|+++.....+++++|.+|++++|++.++|+++||+.|+|||+++++|
T Consensus 241 s~RF~g~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~l~~~~~~~~kyla~~~~~R 320 (450)
T PLN00221 241 SLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYR 320 (450)
T ss_pred cccccccccCCHHHHHHhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhcccceeeecCCCcchHHHHHHHHc
Confidence 99999999999999999999999999999999999987777788899999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHhhhcccccceeecCCCCceeeeeccCCccCCCCCccceeeeEEEecccCC
Q 037616 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTS 383 (383)
Q Consensus 321 G~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~ 383 (383)
|++.++++.+++.+++.++++.|++|+|+++++++|+++|...+++.++++++++++++|+|+
T Consensus 321 G~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~i~~~~~~~~~~~~~~~~~~s~~~l~Nsts 383 (450)
T PLN00221 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTA 383 (450)
T ss_pred CCCCHHHHHHHHHHHHhcCCccccccCCCCEeeeecCCCCccCCCccccccceeEEEecCCcH
Confidence 999999999999999888999999999999999999999988888888888999999999986
No 3
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=5.1e-103 Score=791.82 Aligned_cols=383 Identities=94% Similarity=1.472 Sum_probs=364.9
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeccccc
Q 037616 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (383)
Q Consensus 1 MrEii~iqvGqcGnqIG~~~w~~~~~eh~~~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRailiD~e~~~i~~i~~ 80 (383)
|||||+||+||||||||.+||+++|+||+++++|.+..+...+...++.++||+|+.+++|+|||||||+||++|++++.
T Consensus 1 M~EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (448)
T PTZ00335 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRT 80 (448)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhccc
Confidence 99999999999999999999999999999999997654322112346789999999999999999999999999999999
Q ss_pred ccccccCCcccccccCcccccCCCccccccchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhh
Q 037616 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (383)
Q Consensus 81 ~~~~~l~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~ 160 (383)
++++++|+|++++.+++|+|||||+|||+.|+++.|+++|+|||++|+||++|||+++||+|||||||+|++|+|+|+|+
T Consensus 81 ~~~~~l~~~~~~i~~~~gagnnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~ 160 (448)
T PTZ00335 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVD 160 (448)
T ss_pred CccccccCchheeecCCCCCCcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcceeEEEEecCCCCCCccchhhhHHHhHHhhhhccccceecChHHHHhhhhccCCCCCCChhhHHHHHHHHHhcccc
Q 037616 161 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240 (383)
Q Consensus 161 yp~~~i~~~~v~P~~~~~~~~v~~yNa~lsl~~l~~~~d~vi~~dN~~L~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~ 240 (383)
||++.+++++|+|++..++++++|||++|+|++|.+++|+++++||++|+++|.+.+++..++|+++|++||++|+++|+
T Consensus 161 yp~~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~~~~~~~~~~N~~Ia~~is~~t~ 240 (448)
T PTZ00335 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTA 240 (448)
T ss_pred ccccceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcCCCCCCHHHHHHHHHhhhccccc
Confidence 99999999999999877899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhccCCccCCccceeccccccccccccccccccCHHHHHHHhcCCCCCccccCCCCCcccccccccc
Q 037616 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 320 (383)
Q Consensus 241 ~~r~~g~~n~dl~~l~~nLvp~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 320 (383)
++||||.++.|++++++||||||++||++++++|+++.....++.++|.+|++++|++++++++++|+.|+|||+++++|
T Consensus 241 ~~rf~g~~~~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~~~ls~~~~~R 320 (448)
T PTZ00335 241 SLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACCLMYR 320 (448)
T ss_pred ccccccccCCCHHHHhccccCCCCceecccccCcccccccccccCCCHHHHHHHhcCccceeEecCCCccchHHHHHHHc
Confidence 99999999999999999999999999999999999987777788999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHhhhcccccceeecCCCCceeeeeccCCccCCCCCccceeeeEEEecccCC
Q 037616 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTS 383 (383)
Q Consensus 321 G~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~ 383 (383)
|++.+.++.+++.+++.|++++|++|+|+++++++|+++|...+.+.++++++++++++|+|+
T Consensus 321 G~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lsNsts 383 (448)
T PTZ00335 321 GDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTA 383 (448)
T ss_pred CCCCHHHHHHHHHHHHhhCCCcCCccCCCCEeeeecCCCCccCCCccccccceEEEEecCCcH
Confidence 999999999999999989999999999999999999999988888888888999999999986
No 4
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=1.6e-99 Score=765.42 Aligned_cols=382 Identities=89% Similarity=1.426 Sum_probs=363.2
Q ss_pred eeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceecccccc
Q 037616 2 RECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTG 81 (383)
Q Consensus 2 rEii~iqvGqcGnqIG~~~w~~~~~eh~~~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRailiD~e~~~i~~i~~~ 81 (383)
||||+||+||||||||.+||+++|+||+++++|.+....+.+...+++++||+|+.+++|+||||+||+||++|++++.+
T Consensus 1 ~EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~~ 80 (434)
T cd02186 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTG 80 (434)
T ss_pred CceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhccC
Confidence 79999999999999999999999999999999876443221124567899999999999999999999999999999998
Q ss_pred cccccCCcccccccCcccccCCCccccccchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhh
Q 037616 82 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDY 161 (383)
Q Consensus 82 ~~~~l~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~y 161 (383)
+++.+|++++++.+++|+|||||+|||+.|+++.|+++|+||+++|+||++|||+++||+|||||||+|++|+|+|+|+|
T Consensus 81 ~~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y 160 (434)
T cd02186 81 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDY 160 (434)
T ss_pred ccccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEecCCCCCCccchhhhHHHhHHhhhhccccceecChHHHHhhhhccCCCCCCChhhHHHHHHHHHhccccc
Q 037616 162 GKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTAS 241 (383)
Q Consensus 162 p~~~i~~~~v~P~~~~~~~~v~~yNa~lsl~~l~~~~d~vi~~dN~~L~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~ 241 (383)
|++++.+++|+|+...++++++|||++|+|++|.+++|+++++||++|+++|.+.++++.++|++||++||++|+++|++
T Consensus 161 ~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~lN~iIa~~l~~~t~~ 240 (434)
T cd02186 161 GKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITAS 240 (434)
T ss_pred CccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccc
Confidence 99999999999998767889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccchhhhccCCccCCccceeccccccccccccccccccCHHHHHHHhcCCCCCccccCCCCCccccccccccc
Q 037616 242 LRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRG 321 (383)
Q Consensus 242 ~r~~g~~n~dl~~l~~nLvp~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG 321 (383)
+||||.++.|++++++||||||++||++++++|+++.....++.++|.+|++++|+++++|+.++|+.|+|||+++++||
T Consensus 241 ~rf~g~~~~~l~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~~~la~~~~~RG 320 (434)
T cd02186 241 LRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRG 320 (434)
T ss_pred eecCCccCCCHHHHHhhccccccceeeccccCcccchhhccccCCCHHHHHHHHhCccceeeecCCcchhHHHHHHHHcC
Confidence 99999999999999999999999999999999999877777888999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHhhhcccccceeecCCCCceeeeeccCCccCCCCCccceeeeEEEecccCC
Q 037616 322 DVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTS 383 (383)
Q Consensus 322 ~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~ 383 (383)
++.++++.+++.+++.++.+.|++|+|+++++++|+++|.+.+++.++++++++++++|+|+
T Consensus 321 ~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~ 382 (434)
T cd02186 321 DVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTA 382 (434)
T ss_pred CCCHHHHHHHHHHHHHhCCCcCcccCCCcEeeeecCCCCccCCCccccccceEEEEecCchH
Confidence 99999999999999888899999999999999999999988888888888999999999986
No 5
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=1.4e-99 Score=767.35 Aligned_cols=373 Identities=43% Similarity=0.827 Sum_probs=355.5
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeccccc
Q 037616 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (383)
Q Consensus 1 MrEii~iqvGqcGnqIG~~~w~~~~~eh~~~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRailiD~e~~~i~~i~~ 80 (383)
|||||+||+||||||||.+||+++++||+++++|.+....+. ..+++++||+|+.+++|+||||+||+||++|++++.
T Consensus 1 M~Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~~~~--~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~ 78 (445)
T PTZ00010 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDL--QLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRA 78 (445)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCCCcc--cccccceeecccCCCceEEeeeeccCChhhhhhhcc
Confidence 999999999999999999999999999999999877543321 236778999999999999999999999999999998
Q ss_pred ccccccCCcccccccCcccccCCCccccccchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhh
Q 037616 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (383)
Q Consensus 81 ~~~~~l~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~ 160 (383)
++++.+|+|++++.+++|+|||||+|||+.|+++.++++|+||+++|+||++|||+++||+|||||||+|++|+|+|+|+
T Consensus 79 ~~~~~lf~~~~~~~~~~gagNnwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~de 158 (445)
T PTZ00010 79 GPYGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREE 158 (445)
T ss_pred cchhhhcCccceeecccCCccccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhh
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcceeEEEEecCCCCCCccchhhhHHHhHHhhhhccccceecChHHHHhhhhccCCCCCCChhhHHHHHHHHHhcccc
Q 037616 161 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240 (383)
Q Consensus 161 yp~~~i~~~~v~P~~~~~~~~v~~yNa~lsl~~l~~~~d~vi~~dN~~L~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~ 240 (383)
|||+.+.+++|+|++..+++++||||++|++++|.+++|++++|||++|+++|++.++++.|+|.+||++||++|+++|+
T Consensus 159 y~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~~~~p~~~~lN~lIaq~is~~t~ 238 (445)
T PTZ00010 159 YPDRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVTC 238 (445)
T ss_pred CCccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhccCCCCCHHHHHHHHHhhcccccc
Confidence 99999999999999877889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhccCCccCCccceeccccccccccccccccccCHHHHHHHhcCCCCCccccCCCCCcccccccccc
Q 037616 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 320 (383)
Q Consensus 241 ~~r~~g~~n~dl~~l~~nLvp~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 320 (383)
++||||.+|.|+.++++||||||++||++++++|+++..+..++.++|.+|++++|+++++++++||++|+|||+++++|
T Consensus 239 ~~Rfpg~ln~dl~~l~tnLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~k~la~~~~~R 318 (445)
T PTZ00010 239 CLRFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKNMMCAADPRHGRYLTASALFR 318 (445)
T ss_pred ceecCCcccccHHHHHHHHhcCCCceeeecccCccccccccccccCCHHHHHHhHhcccceEeecCCCcchhHHHHHHHc
Confidence 99999999999999999999999999999999999987777788999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHhhhcccccceeecCCCCceeeeeccCCccCCCCCccceeeeEEEecccCC
Q 037616 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTS 383 (383)
Q Consensus 321 G~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~ 383 (383)
|++.++++.+++.+++.+++++|++|+|+++++++|+++|... +++++|++|+|+
T Consensus 319 G~~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~--------~~s~~~lsNsts 373 (445)
T PTZ00010 319 GRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGL--------KMSVTFIGNSTA 373 (445)
T ss_pred CCCCHHHHHHHHHHHHhhCCccCccccCCCEEEeecCcCCcCc--------cceEEEecCCcH
Confidence 9999999999999998889999999999999999999998533 489999999986
No 6
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=2.2e-99 Score=761.99 Aligned_cols=374 Identities=36% Similarity=0.675 Sum_probs=351.4
Q ss_pred eeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceecccccc
Q 037616 2 RECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTG 81 (383)
Q Consensus 2 rEii~iqvGqcGnqIG~~~w~~~~~eh~~~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRailiD~e~~~i~~i~~~ 81 (383)
||||+||+||||||||.+||+++|+||+++++|....+.+ ...+++++||+|+.+++|+|||||||+||++|++++.+
T Consensus 1 ~EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~~~--~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~ 78 (431)
T cd02188 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFAT--DGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNS 78 (431)
T ss_pred CcEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCCcc--ccccccceeEEECCCCccCCcceeccCCcchhhhhhcC
Confidence 7999999999999999999999999999999987654322 23567899999999999999999999999999999999
Q ss_pred cccccCCcccccccCc--ccccCCCccccccchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhh
Q 037616 82 TYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSV 159 (383)
Q Consensus 82 ~~~~l~~~~~~~~~~~--g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~ 159 (383)
+++++|+|++++.+++ |+|||||+||+ .|+++.|+++|+||+++|+||++|||+++||+|||||||+|++|+|+|+|
T Consensus 79 ~~~~lf~~~~~~~~~~~~gagnnwa~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d 157 (431)
T cd02188 79 EYRNLYNPENIFLSKHGGGAGNNWASGYS-QGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLND 157 (431)
T ss_pred ccccccCccceEeeccCCCccccHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHh
Confidence 8889999999999998 99999999965 69999999999999999999999999999999999999999999999999
Q ss_pred hhCCcceeEEEEecCCCC-CCccchhhhHHHhHHhhhhccccceecChHHHHhhhhccCCCCCCChhhHHHHHHHHHhcc
Q 037616 160 DYGKKSKLGFTVYPSPQV-STSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSL 238 (383)
Q Consensus 160 ~yp~~~i~~~~v~P~~~~-~~~~v~~yNa~lsl~~l~~~~d~vi~~dN~~L~~~~~~~l~~~~~~~~~~N~~ia~~i~~~ 238 (383)
+||++.+++++|+|++.. +++++||||++|+|++|.+++|+++++||++|.++|++.++++.|+|+++|++||++|+++
T Consensus 158 ~y~~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~ls~~ 237 (431)
T cd02188 158 RYPKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSAS 237 (431)
T ss_pred HcCcceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcCCCCCCHHHHHHHHhccCCCc
Confidence 999999999999998764 5889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCccchhhhccCCccCCccceeccccccccccc-cccccccCHHHHHHHhcCCCCCccccCC-CCCcccccc
Q 037616 239 TASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAE-KAYHEQLSVAEITNSAFEPSSMMAKCDP-RHGKYMACC 316 (383)
Q Consensus 239 t~~~r~~g~~n~dl~~l~~nLvp~P~~~fl~~s~~P~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~ls~~ 316 (383)
|+++||||.+|.|+.++++||||||++||++++++|+++.. +..++..+|.+|++++|++.++|++++| +.|+||||+
T Consensus 238 t~~~Rf~g~ln~dl~~i~tnLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~l~~~l~~~~n~m~~~~~~~~~k~la~~ 317 (431)
T cd02188 238 TTTLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNIMVSTATRKNGCYISIL 317 (431)
T ss_pred ccceecCCccCCCHHHHHHhcCCCCCceeeccccCccccchhhcceecCCHHHHHHHHhccccceeecCCCccchhHHHH
Confidence 99999999999999999999999999999999999999877 5677889999999999999999999999 899999999
Q ss_pred ccccccCChhhHHHHHHhhhcccccceeecCCCCceeeeeccCCccCCCCCccceeeeEEEecccCC
Q 037616 317 LMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTS 383 (383)
Q Consensus 317 ~~~RG~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~ 383 (383)
+++||++.++++.+++.++|.+.+++|++|+|+++++++|+++|...+ ..+++++|++|+|+
T Consensus 318 ~~~RG~~~~~~~~~~~~~lk~~~~~~f~~W~p~~~~~~~~~~~~~~~~-----~~~~s~~~lsNst~ 379 (431)
T cd02188 318 NIIQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALSKKSPYVPT-----AHRVSGLMLANHTS 379 (431)
T ss_pred HHHcCCCCHHHHHHHHHHHHhhccccCcccCCCCEEEEEeccCCccCC-----CCceeEEEecCChH
Confidence 999999999999999999998888899999999999999999886433 13488999999985
No 7
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=3.8e-99 Score=764.10 Aligned_cols=375 Identities=33% Similarity=0.621 Sum_probs=349.2
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeccccc
Q 037616 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (383)
Q Consensus 1 MrEii~iqvGqcGnqIG~~~w~~~~~eh~~~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRailiD~e~~~i~~i~~ 80 (383)
|||||+|||||||||||.+||+++|+||+++++|.+..+.+ ...++.++||+|+++++|+|||||||+||++|++++.
T Consensus 2 m~EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~~~--~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~ 79 (454)
T PLN00222 2 PREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAT--QGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQN 79 (454)
T ss_pred CccEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCccc--cccccccceeEEcCCCcccceeeecCCCcchhhhhcc
Confidence 69999999999999999999999999999999987744322 1346789999999999999999999999999999999
Q ss_pred ccccccCCcccccccCc--ccccCCCccccccchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhh
Q 037616 81 GTYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLS 158 (383)
Q Consensus 81 ~~~~~l~~~~~~~~~~~--g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~ 158 (383)
++++++|+|++++.+++ |+|||||+||+ .|+++.|+++|+||+++|.||++|||+++||+|||||||+|++|+|+|+
T Consensus 80 ~~~~~lf~~~~~~~~~~~~gagnn~a~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~ 158 (454)
T PLN00222 80 SEYRNLYNHENIFVSDHGGGAGNNWASGYH-QGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALN 158 (454)
T ss_pred CccccccCccceeecccCCCcccchHHhHH-HHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHH
Confidence 88999999999999996 69999999955 7999999999999999999999999999999999999999999999999
Q ss_pred hhhCCcceeEEEEecCCC-CCCccchhhhHHHhHHhhhhccccceecChHHHHhhhhccCCCCCCChhhHHHHHHHHHhc
Q 037616 159 VDYGKKSKLGFTVYPSPQ-VSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISS 237 (383)
Q Consensus 159 ~~yp~~~i~~~~v~P~~~-~~~~~v~~yNa~lsl~~l~~~~d~vi~~dN~~L~~~~~~~l~~~~~~~~~~N~~ia~~i~~ 237 (383)
|+||++.+++++|+|++. .++++++|||++|+|++|.+++|+++++||++|+++|.+.++++.|+|++||++||++|++
T Consensus 159 d~y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~i~~p~~~dlN~lIA~~ls~ 238 (454)
T PLN00222 159 DRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSA 238 (454)
T ss_pred hhcCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcCCCCCCHHHHHHHhccccCC
Confidence 999999999999999863 4788999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCccchhhhccCCccCCccceeccccccccccc-cccccccCHHHHHHHhcCCCCCccccCCCC-----Cc
Q 037616 238 LTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAE-KAYHEQLSVAEITNSAFEPSSMMAKCDPRH-----GK 311 (383)
Q Consensus 238 ~t~~~r~~g~~n~dl~~l~~nLvp~P~~~fl~~s~~P~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~ 311 (383)
+|+++||||.+|.|++++++||||||++||++++++|+.... ...++..++.++++++|+++++|+.+||+. |+
T Consensus 239 ~T~s~Rfpg~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~~~~~l~~~~n~~~~~~~~~~~~~~~k 318 (454)
T PLN00222 239 STTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAK 318 (454)
T ss_pred cccccCCCCccCCCHHHHhhhcCCCCCceeeccccccccccccccceeeCCHHHHHHHHhcccCceeecCCccccccccc
Confidence 999999999999999999999999999999999999997652 345677899999999999999999999887 99
Q ss_pred cccccccccccCChhhHHHHHHhhhcccccceeecCCCCceeeeeccCCccCCCCCccceeeeEEEecccCC
Q 037616 312 YMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTS 383 (383)
Q Consensus 312 ~ls~~~~~RG~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~ 383 (383)
|||+++++||++.++++.+++.+++.+++++|++|+|+++|+++|+++|...+ .+++++++|+|+|+
T Consensus 319 ~la~~~~~RG~~~~~~v~~~~~~~~~~~~~~fv~W~p~~~k~~~~~~~~~~~~-----~~~~s~~~lsNst~ 385 (454)
T PLN00222 319 YISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQT-----AHRVSGLMLANHTS 385 (454)
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHhhhCCccccccCCCCEeeeeccCCCCCCC-----CCceEEEEEeCCHH
Confidence 99999999999999999999999998888999999999999999999886432 24588999999985
No 8
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=5.5e-98 Score=756.24 Aligned_cols=363 Identities=34% Similarity=0.636 Sum_probs=340.4
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhcC-CCCCCCCCCCCCCCCCCCccccccccCC-----CC--ccccceeeeCCCC
Q 037616 1 MRECISVHIGQAGIQVGNACWELYCLEHG-IQPDGQMPSDKTVGGGDDAFNTFFSETG-----AG--KHVPRAVFVDLEP 72 (383)
Q Consensus 1 MrEii~iqvGqcGnqIG~~~w~~~~~eh~-~~~~g~~~~~~~~~~~~~~~~~~F~e~~-----~~--~~~pRailiD~e~ 72 (383)
|||||+|||||||||||.+||+++|+||+ ++++|.+ ++++++||+|.+ ++ +|+|||||||+||
T Consensus 1 m~EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~---------~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep 71 (465)
T PTZ00387 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQY---------DDARDSFFENVSENVNRPGKENLKARAVLVDMEE 71 (465)
T ss_pred CCcEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcc---------cccccceecccccccccCCCccccCcccccCCCc
Confidence 99999999999999999999999999999 7777653 356789999532 23 4999999999999
Q ss_pred ceecccccccccccCCcccccccCcccccCCCccccccchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHH
Q 037616 73 TVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSL 152 (383)
Q Consensus 73 ~~i~~i~~~~~~~l~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~ 152 (383)
++|++++.++++++|++++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||+|||||||+|++
T Consensus 72 ~vi~~i~~~~~~~~f~~~~~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~ 151 (465)
T PTZ00387 72 GVLNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTR 151 (465)
T ss_pred cHHHHhhcCCcccccCcccccccCCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHH
Confidence 99999999989999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhCCcceeEEEEecCCCCCCccchhhhHHHhHHhhhhccccceecChHHHHhhhhccCCCCC-----------
Q 037616 153 LLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIER----------- 221 (383)
Q Consensus 153 lle~l~~~yp~~~i~~~~v~P~~~~~~~~v~~yNa~lsl~~l~~~~d~vi~~dN~~L~~~~~~~l~~~~----------- 221 (383)
|+|+|+|+||++.+++++|||+. .++++++|||++|+|++|.+++|+++++||++|+++|++.+++..
T Consensus 152 lle~l~d~y~~~~~~~~~V~P~~-~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~~~~~~~~~~~~ 230 (465)
T PTZ00387 152 ILGMLEDEFPHVFRFCPVVFPSA-VDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKRG 230 (465)
T ss_pred HHHHHHHhcccCceeeeEecCCC-CCcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcCcccccccccccccc
Confidence 99999999999999999999986 478899999999999999999999999999999999988777653
Q ss_pred ----------------CChhhHHHHHHHHHhccccccccCCCCccchhhhccCCccCCccceeccccccccccccccccc
Q 037616 222 ----------------PTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQ 285 (383)
Q Consensus 222 ----------------~~~~~~N~~ia~~i~~~t~~~r~~g~~n~dl~~l~~nLvp~P~~~fl~~s~~P~~~~~~~~~~~ 285 (383)
++|+++|++||++|+++|+++||||.+|+|++++.+||||||++||++++++|+.+.....++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~N~iIa~~l~~~t~~~Rf~g~~n~dl~~i~~nLvP~P~lhFl~~s~~P~~~~~~~~~~~ 310 (465)
T PTZ00387 231 PQPHKYSVAKPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAPLVSLKDVAVGP 310 (465)
T ss_pred ccccccccccccccccccHHHHHHHHHhhhccccceeecCCccCCCHHHHHhhcCCCCCceeeccccCcccchhhccccc
Confidence 8899999999999999999999999999999999999999999999999999998877777788
Q ss_pred cCHHHHHHHhcCCCCCccccCCCCCccccccccccccCChhhHHHHHHhhhcccccceeecCCCCceeeeeccCCccCCC
Q 037616 286 LSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG 365 (383)
Q Consensus 286 ~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~p~~~~~ 365 (383)
.+|.+|++++|+++++|+.++|+.|+||||++++||++.++++.+.+.++|. .++|++|+|+++++++|+++|...+
T Consensus 311 ~s~~~l~~~l~~~~~~m~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~lk~--~~~f~~W~p~~~~~~~~~~~~~~~~- 387 (465)
T PTZ00387 311 RRLDQMFKDCLDPDHQMVAATPEAGKYLATALIVRGPQNVSDVTRNILRLKE--QLNMIYWNEDGFKTGLCNVSPLGQP- 387 (465)
T ss_pred CCHHHHHHHHhcccCeeeecCCCcchHHHHHHHHcCCCChHHHHHHHHHHhc--cccccccCCCceEEEeeccCCCCCc-
Confidence 9999999999999999999999999999999999999999999999988864 4899999999999999999986544
Q ss_pred CCccceeeeEEEecccCC
Q 037616 366 GDLAKVQRAVCMISNSTS 383 (383)
Q Consensus 366 ~~~~~~~~s~~~l~N~t~ 383 (383)
+++++++|+|+
T Consensus 388 -------~s~~~lsNst~ 398 (465)
T PTZ00387 388 -------YSLLCLANNCC 398 (465)
T ss_pred -------eeEEEecCChH
Confidence 89999999986
No 9
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=6.5e-98 Score=756.69 Aligned_cols=373 Identities=43% Similarity=0.830 Sum_probs=354.7
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeccccc
Q 037616 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (383)
Q Consensus 1 MrEii~iqvGqcGnqIG~~~w~~~~~eh~~~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRailiD~e~~~i~~i~~ 80 (383)
|||||+||+||||||||.+||+++++||+++++|.+....+. ..+++++||+|..+++|+|||||||+||++|++++.
T Consensus 1 m~Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~--~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~ 78 (447)
T PLN00220 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDL--QLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRS 78 (447)
T ss_pred CCceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCCccc--ccccccceeccCCCCcccceeEecCCcHHHHHHHhc
Confidence 999999999999999999999999999999998877543321 236778999999999999999999999999999999
Q ss_pred ccccccCCcccccccCcccccCCCccccccchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhh
Q 037616 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (383)
Q Consensus 81 ~~~~~l~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~ 160 (383)
++++.+|++++++.+++|+|||||+|||+.|+++.|+++|+|||++|+||++|||+++||+|||||||+|++|+|+|+|+
T Consensus 79 ~~~~~~~~~~~~~~~~~gagnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~ 158 (447)
T PLN00220 79 GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (447)
T ss_pred CccccccCccceEecccCCCCccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcceeEEEEecCCCCCCccchhhhHHHhHHhhhhccccceecChHHHHhhhhccCCCCCCChhhHHHHHHHHHhcccc
Q 037616 161 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240 (383)
Q Consensus 161 yp~~~i~~~~v~P~~~~~~~~v~~yNa~lsl~~l~~~~d~vi~~dN~~L~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~ 240 (383)
||++.+++++|+|++..++++++|||++|+|++|.+++|+++++||++|+++|.+.+++..++|+++|++||+.|+++|+
T Consensus 159 y~~~~~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~i~~~sf~~~N~lIa~~is~it~ 238 (447)
T PLN00220 159 YPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238 (447)
T ss_pred ccccceeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhcCCCCChHHHHhHhhccccccch
Confidence 99999999999999877899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhccCCccCCccceeccccccccccccccccccCHHHHHHHhcCCCCCccccCCCCCcccccccccc
Q 037616 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 320 (383)
Q Consensus 241 ~~r~~g~~n~dl~~l~~nLvp~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 320 (383)
++||||.++.|+.++++||||||++||++++++|+.......+++++|.++++++|++++++++++|++|+|||+++++|
T Consensus 239 slRFpG~ln~~l~~l~~nLVP~P~l~Fl~~s~~P~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~gk~la~~~~~R 318 (447)
T PLN00220 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFR 318 (447)
T ss_pred hhccCCcCCccHHHHHHHhCCccceeEeecccCcccccccccccccCHHHHHHHHHhhhhcccccCCCCchhHHHHHHHc
Confidence 99999999999999999999999999999999999887666778899999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHhhhcccccceeecCCCCceeeeeccCCccCCCCCccceeeeEEEecccCC
Q 037616 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTS 383 (383)
Q Consensus 321 G~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~ 383 (383)
|++.++++.+++.+++.+++++|++|+|+++++++|+++|... ++++++|+|+|+
T Consensus 319 G~~~~~ev~~~~~~l~~~~~~~f~~W~p~~~~~~~~~~~~~~~--------~~s~~~l~N~t~ 373 (447)
T PLN00220 319 GKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGL--------KMASTFIGNSTS 373 (447)
T ss_pred CCCCHHHHHHHHHHHHhhCCCccccccCCCEEEeecCCCCCCc--------ceeeEEecCchH
Confidence 9999999999999998888999999999999999999988543 389999999985
No 10
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=2.7e-97 Score=747.84 Aligned_cols=372 Identities=43% Similarity=0.822 Sum_probs=352.7
Q ss_pred eeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceecccccc
Q 037616 2 RECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTG 81 (383)
Q Consensus 2 rEii~iqvGqcGnqIG~~~w~~~~~eh~~~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRailiD~e~~~i~~i~~~ 81 (383)
||||+||+||||||||.+||+++|+||+++++|.+....+ ...++.++||+|+.+++|+||||+||+||++|++++.+
T Consensus 1 ~eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~--~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~ 78 (425)
T cd02187 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSD--LQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSG 78 (425)
T ss_pred CceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCCcc--ccccccceeEEecCCCceeeeeeeccCChhhhhhhhcC
Confidence 7999999999999999999999999999999987644322 12367789999999999999999999999999999888
Q ss_pred cccccCCcccccccCcccccCCCccccccchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhh
Q 037616 82 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDY 161 (383)
Q Consensus 82 ~~~~l~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~y 161 (383)
+++.+|++++++.+++|+|||||+|||+.|+++.|+++|+||+++|+||++|||+++||+|||||||+|++++|+|+|+|
T Consensus 79 ~~~~l~~~~~~~~~~~gagnnwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y 158 (425)
T cd02187 79 PFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEY 158 (425)
T ss_pred cccceecCcceeeccCCCCCccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEecCCCCCCccchhhhHHHhHHhhhhccccceecChHHHHhhhhccCCCCCCChhhHHHHHHHHHhccccc
Q 037616 162 GKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTAS 241 (383)
Q Consensus 162 p~~~i~~~~v~P~~~~~~~~v~~yNa~lsl~~l~~~~d~vi~~dN~~L~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~ 241 (383)
|++.+++++|+|++..++++++|||++|+|++|.+++|++++|||++|+++|++.+++..++|+++|++||++|+++|++
T Consensus 159 ~~~~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~~~~~~~~~~N~~ia~~is~~t~s 238 (425)
T cd02187 159 PDRIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTC 238 (425)
T ss_pred CCcceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcCCCCCCHHHHHHHHhcccccccee
Confidence 99999999999998767899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccchhhhccCCccCCccceeccccccccccccccccccCHHHHHHHhcCCCCCccccCCCCCccccccccccc
Q 037616 242 LRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRG 321 (383)
Q Consensus 242 ~r~~g~~n~dl~~l~~nLvp~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG 321 (383)
+||||.+|.|+.++++||||||++||++++++|+++.....++.+++.+|++++|++++++++++|+.|+|||+++++||
T Consensus 239 ~Rfpg~~n~dl~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~~~~la~~~~~RG 318 (425)
T cd02187 239 LRFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTAAAIFRG 318 (425)
T ss_pred eecCCccccCHHHHHHhcCCCCCceecccccCccccccccccccCCHHHHHHHHhCccCeeeccCCCcchHHHHHHHHcC
Confidence 99999999999999999999999999999999999877667788999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHhhhcccccceeecCCCCceeeeeccCCccCCCCCccceeeeEEEecccCC
Q 037616 322 DVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTS 383 (383)
Q Consensus 322 ~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~ 383 (383)
++.++++.+.+.+++.++++.|++|+|+++++++|+++|... +++++|++|+|+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~--------~~s~~~l~N~t~ 372 (425)
T cd02187 319 RVSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGL--------KMSATFIGNSTA 372 (425)
T ss_pred CCCHHHHHHHHHHHHHhCCCcCCCcCCCCEeeeecCCCCCCc--------ceeEEEecCCcH
Confidence 999999999999998888999999999999999999987533 489999999986
No 11
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=100.00 E-value=2.4e-95 Score=689.70 Aligned_cols=375 Identities=35% Similarity=0.658 Sum_probs=351.4
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeccccc
Q 037616 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (383)
Q Consensus 1 MrEii~iqvGqcGnqIG~~~w~~~~~eh~~~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRailiD~e~~~i~~i~~ 80 (383)
||||||||+||||||||.+||+++|+||||.++|......+ +..++.++||+|..++.|+|||||||+||+||+.+..
T Consensus 2 ~~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~~~--~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~ 79 (448)
T KOG1374|consen 2 PREIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDFAT--EGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILS 79 (448)
T ss_pred CceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccchhh--hCccccccceeeccCCccccceeeeccchHHHhcccc
Confidence 68999999999999999999999999999999999766544 3568889999999999999999999999999999999
Q ss_pred ccccccCCcccccccC--cccccCCCccccccchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhh
Q 037616 81 GTYRQLFHPEQLISGK--EDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLS 158 (383)
Q Consensus 81 ~~~~~l~~~~~~~~~~--~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~ 158 (383)
++++++|+++++...+ .|||||||.| |.+|++..|+|+|.|+||+|.||+++||+++||++||||||+||.|+|+|+
T Consensus 80 ~~~s~l~n~eni~~s~~ggGAGNNWA~G-Y~~G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~ 158 (448)
T KOG1374|consen 80 SPYSGLYNPENIFLSDHGGGAGNNWASG-YSQGERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLN 158 (448)
T ss_pred chhhcccCccceEEecCCCCcccccccc-cccchhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHH
Confidence 9999999999998765 5899999999 556999999999999999999999999999999999999999999999999
Q ss_pred hhhCCcceeEEEEecCCC-CCCccchhhhHHHhHHhhhhccccceecChHHHHhhhhccCCCCCCChhhHHHHHHHHHhc
Q 037616 159 VDYGKKSKLGFTVYPSPQ-VSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISS 237 (383)
Q Consensus 159 ~~yp~~~i~~~~v~P~~~-~~~~~v~~yNa~lsl~~l~~~~d~vi~~dN~~L~~~~~~~l~~~~~~~~~~N~~ia~~i~~ 237 (383)
|.||||.+.+++|||... .+|+||||||++|+|++|.+.+|+++++||.||.++|.+.+.+++|+|.++|++||..|++
T Consensus 159 drypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i~~ptF~~iNqLvstims~ 238 (448)
T KOG1374|consen 159 DRYPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHIQNPTFSQINQLVSTIMSA 238 (448)
T ss_pred HhchhhhheeeeeccCCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999873 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCccchhhhccCCccCCccceecccccccccccccc--ccccCHHHHHHHhcCCCCCccccCC---CCCcc
Q 037616 238 LTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAY--HEQLSVAEITNSAFEPSSMMAKCDP---RHGKY 312 (383)
Q Consensus 238 ~t~~~r~~g~~n~dl~~l~~nLvp~P~~~fl~~s~~P~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~ 312 (383)
.|.++||||+++.++..|...|+|+|++||++++|.|+++..... .+..++.+.+++++.++++|++..+ .+..|
T Consensus 239 st~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~~~tP~~sd~~~~~~~rkttvldvmRrLL~pkn~mvs~~~~~~~~~~~ 318 (448)
T KOG1374|consen 239 STTTLRYPGYMNNDLIGLYASLIPTPELHFLMTGYTPLTSDNSLATAVRKTTVLDVMRRLLQPKNMMVSTADDLSGNPCY 318 (448)
T ss_pred ccccccchhhccCcHHHHHhhcCCCCCeeeeeccCCcccChhhhhhhhhcchHHHHHHHHhCcchhhhhccccccCCcch
Confidence 999999999999999999999999999999999999999876554 4788899999999999999998765 33489
Q ss_pred ccccccccccCChhhHHHHHHhhhcccccceeecCCCCceeeeeccCCccCCCCCccceeeeEEEecccCC
Q 037616 313 MACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTS 383 (383)
Q Consensus 313 ls~~~~~RG~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~ 383 (383)
++...+..|.+.+.++.+++.+++.++..+|+.|.|.++++++.+..|...+. ++.||+||+|+|+
T Consensus 319 ~si~n~iqg~vdp~~v~~s~~r~~dr~~a~f~~w~~~si~val~k~spy~~~~-----~~vSglml~N~t~ 384 (448)
T KOG1374|consen 319 ISILNIIQGEVDPTQVHKSLQRIRDRKLANFIPWGPASIQVALSKKSPYVQRA-----HRVSGLMLANSTS 384 (448)
T ss_pred HhHHhhhhcccCHHHHHHHHHHHHhcccccCCCCCCHHHHhhhhcCCCccccc-----cceeeeeeccchh
Confidence 99999999999999999999999999999999999999999999988876663 6699999999985
No 12
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=7.7e-89 Score=689.76 Aligned_cols=362 Identities=27% Similarity=0.472 Sum_probs=330.8
Q ss_pred EEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceecccccccc
Q 037616 4 CISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTY 83 (383)
Q Consensus 4 ii~iqvGqcGnqIG~~~w~~~~~eh~~~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRailiD~e~~~i~~i~~~~~ 83 (383)
||+|||||||||||.+||+++|+||+++++|.+. ...+.+++||+|..+++|+|||||||+||++|++++.+..
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~------~~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~ 75 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYK------YERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSS 75 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCcc------ccccccceeecccCCCCcCCceeecCCCchHHHHhhcCCC
Confidence 8999999999999999999999999998887653 1346778999999999999999999999999999988654
Q ss_pred c--ccCCcccccccCcccccCCCccccccchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhh
Q 037616 84 R--QLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDY 161 (383)
Q Consensus 84 ~--~l~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~y 161 (383)
+ ++|++++++.+++|+|||||+|||+.|+++.|+++|+|||++|+||++|||+++||+|||||||+|++|+|+|+|+|
T Consensus 76 ~~~~~f~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y 155 (446)
T cd02189 76 GGTWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEY 155 (446)
T ss_pred CcccccCchheeecCCCCccchhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhc
Confidence 3 58999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEecCCCCCCccchhhhHHHhHHhhhhccccceecChHHHHhhhhccCCCCCCChhhHHHHHHHHHhccccc
Q 037616 162 GKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTAS 241 (383)
Q Consensus 162 p~~~i~~~~v~P~~~~~~~~v~~yNa~lsl~~l~~~~d~vi~~dN~~L~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~ 241 (383)
|++.+.+++|+|+. .+++++||||++|+|++|.+++|+++++||++|.++|++.++++.++|+++|++||+.|+++|++
T Consensus 156 ~~~~~~~~~v~P~~-~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~~N~~Ia~~l~~~~~~ 234 (446)
T cd02189 156 PESLLLNIVVWPYT-TGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQP 234 (446)
T ss_pred CccceeeeeccCCC-CCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhH
Confidence 99999999999986 58899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-C-------CCCccchhhhccCCccCCccceeccccccccccccccccccCHHHHHHHhc---CCCCCccc------
Q 037616 242 LRF-D-------GALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAF---EPSSMMAK------ 304 (383)
Q Consensus 242 ~r~-~-------g~~n~dl~~l~~nLvp~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~------ 304 (383)
.|| | |.++.|++++.+||||||++||++++++|+++.....++..+|.+|+++++ .+.+.+..
T Consensus 235 ~r~~~~~~~~~~~~~~~~l~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~l~qm~~~~~~~~~~~~~~~ 314 (446)
T cd02189 235 SLDSTGSNGALAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQMPEKSLAFSTFSWSALLKRLHQMLIAGSFMEEGIDWTV 314 (446)
T ss_pred hhccCcccccccccccCCHHHHHhhCcCCCCceeeecccCCcccccccccccCCHHHHHHHHHHhhcccccccccccccc
Confidence 987 6 346999999999999999999999999999987777788999999999976 56666655
Q ss_pred -------------cCCCCCccccccccccccCChhhHHHHHHhhhcccccceeecCCCCceeeeeccCCccCCCCCccce
Q 037616 305 -------------CDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKV 371 (383)
Q Consensus 305 -------------~~~~~~~~ls~~~~~RG~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~p~~~~~~~~~~~ 371 (383)
++++.++||++++++||+...+++...+ ++.+.|++|+|+++++++|+++|... +.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~ls~~~i~RG~~~~~~~~~~~-----~~~~~f~~W~p~~~~~~~~~~~~~~~------~~ 383 (446)
T cd02189 315 RPEGSAASLLSGNKSTHFNKSLANLLILRGKDVTSADERKF-----RDPLLYVNWSPSPVRFSISSHKRSFS------KY 383 (446)
T ss_pred ccccccccccccccCCcccceeeeeeeeeCCCchHHHHHHH-----hccCcCCCcCCCCEeeeecCCCCCcC------Cc
Confidence 5678899999999999998888877543 36689999999999999999987531 24
Q ss_pred eeeEEEecccCC
Q 037616 372 QRAVCMISNSTS 383 (383)
Q Consensus 372 ~~s~~~l~N~t~ 383 (383)
+++++|++|+|+
T Consensus 384 ~~s~~~l~Nst~ 395 (446)
T cd02189 384 EKSVTLVSNSQT 395 (446)
T ss_pred ceeEEEEeCCch
Confidence 589999999985
No 13
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=1.3e-88 Score=675.03 Aligned_cols=327 Identities=37% Similarity=0.708 Sum_probs=313.0
Q ss_pred eeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceecccccc
Q 037616 2 RECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTG 81 (383)
Q Consensus 2 rEii~iqvGqcGnqIG~~~w~~~~~eh~~~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRailiD~e~~~i~~i~~~ 81 (383)
||||+||+||||||||.+||+++|+|| |+||||+||+||++|++++.+
T Consensus 1 ~Eii~i~~GqcGnqig~~~w~~~~~eh--------------------------------~~pR~v~iD~e~~~i~~i~~~ 48 (379)
T cd02190 1 REIIVVQVGQCGNQIGCRFWDLALREH--------------------------------LKARAVLIDMEEGVVNEILKG 48 (379)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHHhh--------------------------------cCCcceeccCChhHHHHHhcC
Confidence 799999999999999999999999988 679999999999999999998
Q ss_pred cccccCCcccccccCcccccCCCccccccchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhh
Q 037616 82 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDY 161 (383)
Q Consensus 82 ~~~~l~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~y 161 (383)
+++++|++++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||+|||||||+|++|+|.|+|+|
T Consensus 49 ~~~~~~~~~~~~~~~~gaGnn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y 128 (379)
T cd02190 49 PLRDLFDETQLVTDVSGAGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEF 128 (379)
T ss_pred ccccccCcccccccCCCCCCCccceeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEecCCCCCCccchhhhHHHhHHhhhhccccceecChHHHHhhhhccCCCCCCChhhHHHHHHHHHhccccc
Q 037616 162 GKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTAS 241 (383)
Q Consensus 162 p~~~i~~~~v~P~~~~~~~~v~~yNa~lsl~~l~~~~d~vi~~dN~~L~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~ 241 (383)
|++.+++++|+|++. ++++++|||++|+|++|.+++|+++++||++|. +|+++|++||+.|+++|++
T Consensus 129 ~~~~~~~~~v~P~~~-~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~------------~~~~~N~~ia~~i~~~t~~ 195 (379)
T cd02190 129 PEVYRFVTSVYPSAD-DDVITSPYNSVLALRELIEHADCVLPIENQALV------------PFDAMNSIVANLLLNLTSS 195 (379)
T ss_pred CccceEEEeecCCCC-CCceecccHHHHHHHHHHHhCCeeEEeccHHHH------------HHHHHHHHHHhhhcCccce
Confidence 999999999999985 888999999999999999999999999999997 6999999999999999999
Q ss_pred cccCCCCccchhhhccCCccCCccceeccccccccccccccccccCHHHHHHHhcCCCCCccccCCCCCccccccccccc
Q 037616 242 LRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRG 321 (383)
Q Consensus 242 ~r~~g~~n~dl~~l~~nLvp~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG 321 (383)
+||||.+|.|+.++.+||||||++||++++++|+++.....++..++.+|++++|+++++|+.+||+.|+||++++++||
T Consensus 196 ~rf~g~~n~d~~~i~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~kyls~~~i~RG 275 (379)
T cd02190 196 MRFEGSLNVDLNEITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSRNHQLIRADPKHGLYLACALLVRG 275 (379)
T ss_pred eecccccccchhhhccccccCCCceecccccccccchhhccccCCCHHHHHHHHHccccceeecCCCcchHHHHHHHHcC
Confidence 99999999999999999999999999999999999876667788999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHhhhcccccceeecCCCCceeeeeccCCccCCCCCccceeeeEEEecccCC
Q 037616 322 DVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTS 383 (383)
Q Consensus 322 ~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~ 383 (383)
++.+.++.+.+.+++.+ .+|++|+|+++++++|+++|... ++++++++|+|+
T Consensus 276 ~~~~~ei~~~~~~l~~~--~~fv~W~p~~~~~~~~~~~~~~~--------~~s~~~lsNsTs 327 (379)
T cd02190 276 NVSVSDLRRNIERLKPK--LKFVKWNQEGWKIGLCSVPPVGH--------SYSLLCLANNTC 327 (379)
T ss_pred CCCHHHHHHHHHHHhcc--CcCcCcCCCcEEEeecccCCCCc--------ceeEEEecCccH
Confidence 99999999999888765 68999999999999999988543 389999999986
No 14
>KOG1376 consensus Alpha tubulin [Cytoskeleton]
Probab=100.00 E-value=1.8e-85 Score=620.65 Aligned_cols=360 Identities=86% Similarity=1.383 Sum_probs=347.4
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeccccc
Q 037616 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (383)
Q Consensus 1 MrEii~iqvGqcGnqIG~~~w~~~~~eh~~~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRailiD~e~~~i~~i~~ 80 (383)
|||||+||+||+|.|||+++|+++|.||||+++|.++.+.+.....+.+++||+++..+|++||++|||+||. ||+++.
T Consensus 1 m~e~i~ih~gqag~qi~naCwel~clEhgi~~~g~~p~~~~~~~~~~~~~tff~~t~~~k~~pr~~fVDlEPt-idevrt 79 (407)
T KOG1376|consen 1 MREIISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPDDKSVGKGDDSFNTFFSETGAGKHVPRAVFVDLEPT-IDEVRT 79 (407)
T ss_pred CCcceeeeeccccccccchhHHHHHHHhcCccCCcCCCCccccccCcccceeecccccccccceeEEEeccCc-cchhcc
Confidence 9999999999999999999999999999999999988765544455678999999999999999999999999 999999
Q ss_pred ccccccCCcccccccCcccccCCCccccccchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhh
Q 037616 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (383)
Q Consensus 81 ~~~~~l~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~ 160 (383)
|.|+.+|+|++++.|+++++||+|+|+|++|+|++|..+++||+.++.|..+|||+++||.|||||||+++.++|++..+
T Consensus 80 G~y~~lfHPeqlitGkedAannyArghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lmerls~~ 159 (407)
T KOG1376|consen 80 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLMERLSVD 159 (407)
T ss_pred cchhhccCchhccCcchHhhhhHHhhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCCcCCccchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcceeEEEEecCCCCCCccchhhhHHHhHHhhhhccccceecChHHHHhhhhccCCCCCCChhhHHHHHHHHHhcccc
Q 037616 161 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240 (383)
Q Consensus 161 yp~~~i~~~~v~P~~~~~~~~v~~yNa~lsl~~l~~~~d~vi~~dN~~L~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~ 240 (383)
|+|+..+.+++||++..+..+++|||++|+.+...+++|+++++||++.+.+|++++.++.|+|.++|++|+++++++|+
T Consensus 160 ~GKkskl~fsiypapqvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~~l~i~rPtyt~lnr~i~qVvSsita 239 (407)
T KOG1376|consen 160 YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITA 239 (407)
T ss_pred hhhccccccccccCccccccccCCccccccceeecccCcceeecCchhhcchhhhccccCCccccchhhhHHhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhccCCccCCccceeccccccccccccccccccCHHHHHHHhcCCCCCccccCCCCCcccccccccc
Q 037616 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 320 (383)
Q Consensus 241 ~~r~~g~~n~dl~~l~~nLvp~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 320 (383)
++||.|.+|+||.++++|||||| + |+|+.+..+..+++.++.++++++|++.|+|++|||+.|+|+||++++|
T Consensus 240 Slrf~g~lnvdl~efqTnlVpyp----l---yap~~s~~~a~he~~sv~~it~~~fe~~~qmvkcDP~~gkyma~cllyr 312 (407)
T KOG1376|consen 240 SLRFDGALNVDLTEFQTNLVPYP----L---YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR 312 (407)
T ss_pred ccccCCcccccHHHHHhhCCCCc----c---cccchhhcccchhhhhHHhhccccccccccccccCCccchHHHHHHhcc
Confidence 99999999999999999999999 2 9999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHhhhcccccceeecCCCCceeeeeccCCccCCCCCccceeeeEEEecccCC
Q 037616 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTS 383 (383)
Q Consensus 321 G~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~ 383 (383)
|++.|+++..++..+|.+++++||+ ..+|.+++++.+|++||++|+|+
T Consensus 313 gdvvP~~v~~A~a~ikt~rt~qfvd---------------~~v~gg~lakv~Ravcmlsntta 360 (407)
T KOG1376|consen 313 GDVVPKDVNAAIATIKTKRTIQFVD---------------TVVPGGDLAKVQRAVCMLSNTTA 360 (407)
T ss_pred CCcCcccchHHHHhhhhccccccce---------------eeccCcchhhhceeeEecCCCcH
Confidence 9999999999999999999999997 33567889999999999999985
No 15
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=7e-80 Score=615.28 Aligned_cols=331 Identities=50% Similarity=0.884 Sum_probs=313.8
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeccccccc
Q 037616 3 ECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT 82 (383)
Q Consensus 3 Eii~iqvGqcGnqIG~~~w~~~~~eh~~~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRailiD~e~~~i~~i~~~~ 82 (383)
|||+|||||||||||.+||+++ |+||+||++|++++.++
T Consensus 1 eii~i~vGq~G~qig~~~w~~~-----------------------------------------i~iD~e~~~i~~i~~~~ 39 (382)
T cd06059 1 EIISIQIGQCGNQIGNKFWELL-----------------------------------------ILVDLDPRVINEILQGQ 39 (382)
T ss_pred CeEEEecCCcHHHHHHHHHHHH-----------------------------------------HcccCCcchhhhhhccc
Confidence 8999999999999999999963 99999999999999988
Q ss_pred ccccCCcccccccCcccccCCCccccccchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhC
Q 037616 83 YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 162 (383)
Q Consensus 83 ~~~l~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp 162 (383)
.+.+|++++++.+++|+|||||+||+..|+++.|+++|+||+++|+||.+|||+++||+|||||||+|++++|.|+|+||
T Consensus 40 ~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~ 119 (382)
T cd06059 40 LSKLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYP 119 (382)
T ss_pred ccccCCcccEEeccccccccccccccccCHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEEEEecCCCCCCccchhhhHHHhHHhhhhccccceecChHHHHhhhhccCCCCCCChhhHHHHHHHHHhcccccc
Q 037616 163 KKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASL 242 (383)
Q Consensus 163 ~~~i~~~~v~P~~~~~~~~v~~yNa~lsl~~l~~~~d~vi~~dN~~L~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~ 242 (383)
++.+++++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.+.+..++|+++|++||++|+++|.++
T Consensus 120 ~~~i~~~~v~P~~~~~~~~v~~yN~~lsl~~L~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~iia~~l~~it~~~ 199 (382)
T cd06059 120 KILINTFSIFPSPQGSSNVVEPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASL 199 (382)
T ss_pred ccceEeEEEeccCccCCccccchHHHHhHHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCChHHHHHHHHHhhccccccc
Confidence 99999999999987666899999999999999999999999999999999999888889999999999999999999999
Q ss_pred ccCCCCccchhhhccCCccCCccceeccccccccccccccccccCHHHHHHHhcCCCCCccccCCCCCcccccccccccc
Q 037616 243 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGD 322 (383)
Q Consensus 243 r~~g~~n~dl~~l~~nLvp~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 322 (383)
||||.+|.|++|++++|||||++||++++++|+++.....++..++.++++++|++.++++.++|+.|+||++++++||+
T Consensus 200 r~~g~~n~d~~~i~~~LvP~p~~~fl~~s~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~ 279 (382)
T cd06059 200 RFPGYLNFDLRKLATNLVPFPRLHFLTPSFAPLISYDSQTTEKLNLLQIINELFNNDNSFFSCDPTKGRYLAAALIFRGD 279 (382)
T ss_pred ccCCCcCCCHHHHhhhcCCCCCceeccccccccccchhcccccCCHHHHHHHHhhcccceeecCCCcchHHHHHHHHhCC
Confidence 99999999999999999999999999999999998766677888999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHhhhcccccceeecCCCCceeeeeccCCccCCCCCccceeeeEEEecccCC
Q 037616 323 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTS 383 (383)
Q Consensus 323 ~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~ 383 (383)
+.++++.+.+.+++.+..+. +|+|+++++++|+++|. ++.++++++++|+|+
T Consensus 280 ~~~~~v~~~~~~~~~~~~~~--~w~p~~~~~~~~~~~~~-------~~~~~s~~~l~Nsts 331 (382)
T cd06059 280 VFQSEIQEAINKLKNKLNIQ--SWIPDGFKVSNCKKPPR-------AELGKSALFLSNSTS 331 (382)
T ss_pred CCHHHHHHHHHHHHHhcccc--cCCCCcEEEEecCCCCC-------cCcceeEEEecCchH
Confidence 99999999998887766554 89999999999999885 123489999999986
No 16
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=100.00 E-value=1.7e-71 Score=545.01 Aligned_cols=328 Identities=45% Similarity=0.821 Sum_probs=306.3
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeccccccc
Q 037616 3 ECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT 82 (383)
Q Consensus 3 Eii~iqvGqcGnqIG~~~w~~~~~eh~~~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRailiD~e~~~i~~i~~~~ 82 (383)
|||+||+||||||||++||+++ |+||+|+++++.++..+
T Consensus 1 eii~i~iG~~G~~i~~~~~~~~-----------------------------------------v~idtd~~~l~~~~~~~ 39 (328)
T cd00286 1 EIVTIQLGQAGNQIGAKFWEQL-----------------------------------------VLVDTEPGVIDETLSGP 39 (328)
T ss_pred CeEEEecCccHhHHHHHHHHhh-----------------------------------------heecCCHHHHHHHhCcc
Confidence 8999999999999999999851 99999999999998887
Q ss_pred ccccCCcccccccCcccccCCCccccccchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhC
Q 037616 83 YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 162 (383)
Q Consensus 83 ~~~l~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp 162 (383)
.+.+|++.+.+.+++|+||||++||+..|++..|+++|+||+++|+||++|||+++||+|||||||+|++++|+|||+||
T Consensus 40 ~~~~~~~~~~~~~~~gag~n~~~G~~~~~~~~~e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~ 119 (328)
T cd00286 40 YRLLFCIGQLITHGGGAGNNWAFGHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYP 119 (328)
T ss_pred cccccCccceeecCCCCCCCcceeeccccHHHHHHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcC
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEEEEecCCCCCCccchhhhHHHhHHhhhhccccceecChHHHHhhhhccCCCCCCChhhHHHHHHHHHhcccccc
Q 037616 163 KKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASL 242 (383)
Q Consensus 163 ~~~i~~~~v~P~~~~~~~~v~~yNa~lsl~~l~~~~d~vi~~dN~~L~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~ 242 (383)
++.+++++|+|+...+ +++++||++|++++|.+++|+++++||++|.++|.+.+....++|+++|++||++|+++|.++
T Consensus 120 ~~~~~~~~v~P~~~~~-~~~~~yNa~l~l~~L~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 198 (328)
T cd00286 120 KRLKITFSILPGPDEG-VIVRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPL 198 (328)
T ss_pred ccceeEEEecCCCCCc-chhhhhHHHHHHHHHHhcCCeEEEecchhHHHHhHHhcCCCCCCHHHHHHHHHhhcccccccc
Confidence 9999999999998533 689999999999999999999999999999999988888888999999999999999999999
Q ss_pred ccCCCCccchhhhccCCccCCccceeccccccccccccccccccCHHHHHHHhcCCCCCccccCCCCCcccccccccccc
Q 037616 243 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGD 322 (383)
Q Consensus 243 r~~g~~n~dl~~l~~nLvp~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 322 (383)
||||.+|.|+.++.++|+|||++||++++++|+.......++..++.+++++++++.++++.++++.++|+++++++||+
T Consensus 199 r~~g~~n~d~~~~~~~l~p~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rG~ 278 (328)
T cd00286 199 RFDGSLNVDLRELSENLVPFPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQALRSKNQMVVCDPTHGGYIAALLLVRGP 278 (328)
T ss_pred ccCccccchHHHHhhhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhCCCCeeeccCCCccchHHHHHHHhCC
Confidence 99999999999999999999999999999999987665666788999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHhhhcccccceeecCCCCceeeeeccCCccCCCCCccceeeeEEEeccc
Q 037616 323 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNS 381 (383)
Q Consensus 323 ~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N~ 381 (383)
.+.+++.+.+..++.+..+. +|+|+++++++|..+|. .+.+.++++|+|+
T Consensus 279 ~~~~~v~~~~~~l~~~~~~~--~w~~~~~~~~~~~~~~~-------~~~~~~~~~l~Ns 328 (328)
T cd00286 279 VSPSEVREGIARVAPRTSHL--SWSPPGIKVGVSPTPPA-------SEHKVSALLLSNS 328 (328)
T ss_pred CChHHHHHHHHHHHHhCCcC--CcCCCCEeEeecCCCCC-------CCcCeEEEEeccC
Confidence 99999999998887765544 89999999999998874 0134889999996
No 17
>KOG1375 consensus Beta tubulin [Cytoskeleton]
Probab=100.00 E-value=1.9e-58 Score=438.65 Aligned_cols=291 Identities=41% Similarity=0.813 Sum_probs=277.2
Q ss_pred CCCccccccccCCCCccccceeeeCCCCceecccccccccccCCcccccccCcccccCCCccccccchhhHHHHHHHHHH
Q 037616 45 GDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRK 124 (383)
Q Consensus 45 ~~~~~~~~F~e~~~~~~~pRailiD~e~~~i~~i~~~~~~~l~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~ 124 (383)
+..+++++|.+...++|+||+|++|+||+++++++.++++.+|+|++ +++| +|||+.|.++.|.
T Consensus 7 q~~~i~~~~~~~~~~~~~~ravlvdlepgs~dsv~~~~~g~~frp~~---~~sg------~ghy~~ga~~~ds------- 70 (369)
T KOG1375|consen 7 QLERINVYYNEAGGGKYVPRAVLVDLEPGSMDSVRSGPFGQIFRPDN---GQSG------KGHYTEGAELVDS------- 70 (369)
T ss_pred eeeeeeeeecccccccccchhheeeccCccccccccCccceeccCcC---CccC------ccceeeeeeehhc-------
Confidence 56788999999999999999999999999999999999999999999 4444 8999999887766
Q ss_pred HhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhCCcceeEEEEecCCCCCCccchhhhHHHhHHhhhhccccceec
Q 037616 125 LADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLL 204 (383)
Q Consensus 125 ~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp~~~i~~~~v~P~~~~~~~~v~~yNa~lsl~~l~~~~d~vi~~ 204 (383)
.||++|||+++||+|||||||.|+++++.++++||.+.+.+++|+|++. ++++++|||+.|+++.|.+++|.++++
T Consensus 71 ---~~dclqgfql~hs~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~k-sd~vvepyna~ls~~ql~en~~et~ci 146 (369)
T KOG1375|consen 71 ---SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPK-SDTVVEPYNATLSVHQLVENADETFCI 146 (369)
T ss_pred ---ccchhhcceeeeeccCccccCcchhhHHHHHHhccchhcccccccCccc-ccceecccccccchhhhhcCCCccccc
Confidence 8999999999999999999999999999999999999999999999997 999999999999999999999999999
Q ss_pred ChHHHHhhhhccCCCCCCChhhHHHHHHHHHhccccccccCCCCccchhhhccCCccCCccceecccccccccccccccc
Q 037616 205 DNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHE 284 (383)
Q Consensus 205 dN~~L~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~g~~n~dl~~l~~nLvp~P~~~fl~~s~~P~~~~~~~~~~ 284 (383)
||++|+++|.+.+.+..++ ++|.++||||.+|.|+.++..|+||||++||++++++|++....++++
T Consensus 147 dNeal~dic~~~lkl~~~~-------------g~tt~~rf~g~lnadl~kl~vnmvpfp~lhffm~g~~pl~s~~~~q~~ 213 (369)
T KOG1375|consen 147 DNEALYDICFRTLKLKTPS-------------GVTTCLRFPGQLNADLTKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR 213 (369)
T ss_pred ccHHHHHHHhhhhcccCCC-------------CceeecccccccchhhhhhhhccCCCcchhhccccccccccccccccc
Confidence 9999999999999988877 889999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHhcCCCCCccccCCCCCccccccccccccCChhhHHHHHHhhhcccccceeecCCCCceeeeeccCCccCC
Q 037616 285 QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVP 364 (383)
Q Consensus 285 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~p~~~~ 364 (383)
..+++++++++|+.+|++..|| ||+++.++|| +.+++++.+..++.|.+.+|++|+|+++|+++|.+||.+++
T Consensus 214 a~tv~eltqq~fdaknmm~a~d-----yLt~a~~~rG--smkevDeqm~~vqnk~ss~f~~wiP~~vktavCdipp~glk 286 (369)
T KOG1375|consen 214 ALTVPELTQQMFDAKNMMTACD-----YLTVAAMFRG--SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPGGLK 286 (369)
T ss_pred cccccccccccccCcchhhhhh-----hhhhHHHhcc--chhhhHHHhhhccccCcchhhhhcccccceeeccCCCcccc
Confidence 9999999999999999999987 9999999999 89999999999999999999999999999999999998777
Q ss_pred CCCccceeeeEEEecccCC
Q 037616 365 GGDLAKVQRAVCMISNSTS 383 (383)
Q Consensus 365 ~~~~~~~~~s~~~l~N~t~ 383 (383)
++++.++|+|+
T Consensus 287 --------ms~tf~~n~ta 297 (369)
T KOG1375|consen 287 --------MSSTFIGNNTA 297 (369)
T ss_pred --------ccccccccchh
Confidence 78899999985
No 18
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=100.00 E-value=6.6e-55 Score=403.60 Aligned_cols=216 Identities=47% Similarity=0.868 Sum_probs=202.5
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeccccccc
Q 037616 3 ECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT 82 (383)
Q Consensus 3 Eii~iqvGqcGnqIG~~~w~~~~~eh~~~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRailiD~e~~~i~~i~~~~ 82 (383)
|||+|||||||||||.+||+++++||+++++.. ......+.++||+|..+++|+||+|+||+||+++++++.++
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~~~------~~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~ 74 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPDSK------SQYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASP 74 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTTSS------SSTTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSE
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhccccccc------cccccccccceeeeccccccccccccccccccccccccccc
Confidence 899999999999999999999999999998711 11356778999999999999999999999999999999887
Q ss_pred ccccCCcccccccCcccccCCCccccccchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhC
Q 037616 83 YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 162 (383)
Q Consensus 83 ~~~l~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp 162 (383)
.+.+|++++++.+++|+|+||++||+..|+++.++++|+||+++|+||.+++|+++||+|||||||+++.|++.||++||
T Consensus 75 ~~~l~~~~~~~~~~~g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~ 154 (216)
T PF00091_consen 75 KRSLFDPNNLISGQEGSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYP 154 (216)
T ss_dssp ETTESCGGGEEETSSTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTST
T ss_pred ccccccccccccccccccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhcccc
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEEEEecCCCCCCccchhhhHHHhHHhhhhccccceecChHHHHhhhhccCCCCCCChhh
Q 037616 163 KKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTN 226 (383)
Q Consensus 163 ~~~i~~~~v~P~~~~~~~~v~~yNa~lsl~~l~~~~d~vi~~dN~~L~~~~~~~l~~~~~~~~~ 226 (383)
++.+++++|+|+. .++++++||++++|++|.+++|++++|||++|.++|.+.++++.|+|++
T Consensus 155 ~~~~~~~~ilP~~--~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~l~~~~~~f~~ 216 (216)
T PF00091_consen 155 KKPIISFSILPFS--SEGVVEPYNALLSLSELQEYADSVILFDNDALYKICKNQLGIENPAFNE 216 (216)
T ss_dssp TSEEEEEEEE-CG--GGSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHHHTSSHSSHHHHH
T ss_pred ccceeeccccccc--cccccccceehhHHHHHHHhCCEEEEEcHHHHHHHHhccCCCCCCCcCC
Confidence 9999999999994 3889999999999999999999999999999999999999999888863
No 19
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=100.00 E-value=5e-40 Score=298.81 Aligned_cols=185 Identities=41% Similarity=0.691 Sum_probs=172.0
Q ss_pred cccccCCCCccccceeeeCCCCceecccccccccccCCcccccccCcccccCCCccccc-----cchhhHHHHHHHHHHH
Q 037616 51 TFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYT-----IGKEIVDLCLDRIRKL 125 (383)
Q Consensus 51 ~~F~e~~~~~~~pRailiD~e~~~i~~i~~~~~~~l~~~~~~~~~~~g~gnn~a~G~~~-----~g~~~~~~~~d~ir~~ 125 (383)
.||.+ |++.||+|++|+|+++++.+..++.+.+|++.+.+.++.++||||++||++ .|+++.++++|+||++
T Consensus 3 ~~~g~---g~~g~r~v~~d~e~~~i~~i~~~t~~~~l~~~~~~~~k~~~Gn~~~~G~~~~~~~~~g~~~~~~~~~~ir~~ 79 (192)
T smart00864 3 KVFGV---GGYGPNAVLVDLEPGVVDEVRANTDAQALNPESLASGKIGAGNNWTRGLGAGADPEVGREAAEESLDEIREE 79 (192)
T ss_pred EEEEe---CCchhhHHhhhcccCCceEEEECCHHHHhCCcccccchhcccccccccCCCCCChHHHHHHHHHHHHHHHHH
Confidence 45665 378999999999999999998777778899988999999999999999998 8999999999999999
Q ss_pred hhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhCCcceeEEEEecCCCCCCccchhhhHHHhHHhhhhccccceecC
Q 037616 126 ADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLD 205 (383)
Q Consensus 126 ~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp~~~i~~~~v~P~~~~~~~~v~~yNa~lsl~~l~~~~d~vi~~d 205 (383)
+|+| ++|+++||+|||||||+++.+++.++ +||+.. ++++|+|. ..|+++++||++++|++|.+++|+++++|
T Consensus 80 le~~---d~~~i~~slgGGTGsG~~~~i~~~~~-~~~~~~-~~~~v~P~--~~e~~~~~~Na~~~l~~l~~~~d~~i~~d 152 (192)
T smart00864 80 LEGA---DGVFITAGMGGGTGTGAAPVIAEIAK-EYGILT-VAVVTKPF--VFEGVVRPYNAELGLEELREHVDSLIVID 152 (192)
T ss_pred hcCC---CEEEEeccCCCCccccHHHHHHHHHH-HcCCcE-EEEEEEeE--eecchhHHHHHHHHHHHHHHhCCEEEEEE
Confidence 9999 89999999999999999999999999 999877 99999994 47889999999999999999999999999
Q ss_pred hHHHHhhhhccCCCCCCChhhHHHHHHHHHhccccccccCC
Q 037616 206 NEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDG 246 (383)
Q Consensus 206 N~~L~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~g 246 (383)
|++|.++|.+.+.+ .++|.++|++||+.|+++|.++||||
T Consensus 153 N~~l~~~~~~~~~~-~~~~~~~N~~i~~~i~~i~~~~rf~g 192 (192)
T smart00864 153 NDALLDICGRNLPI-RPAFKDANDLLAQAVSGITDLIRFPG 192 (192)
T ss_pred hHHHHHHHhccCCc-hHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999877765 67999999999999999999999997
No 20
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=100.00 E-value=1.3e-38 Score=323.46 Aligned_cols=306 Identities=20% Similarity=0.264 Sum_probs=223.7
Q ss_pred eeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCC----CCccccceeeeCCCCceecc
Q 037616 2 RECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETG----AGKHVPRAVFVDLEPTVIDE 77 (383)
Q Consensus 2 rEii~iqvGqcGnqIG~~~w~~~~~eh~~~~~g~~~~~~~~~~~~~~~~~~F~e~~----~~~~~pRailiD~e~~~i~~ 77 (383)
|||||||+||++|+||+||||.+...+...+++. ....+.+++|+++. ..+|+||+|++|+..+.-.-
T Consensus 1 rEIiTlq~G~~aN~vgtHfwN~Qe~~~~y~~~~~--------~~~~~~dvl~r~g~~~~g~~tytPR~l~~Dlkg~~gsl 72 (493)
T cd06060 1 REVLTLQLGHYANFVGTHWWNLQEANFGYDPDSP--------ASELDHDVLYREGRTRQGQVTYTPRLLLLDLKGTLGHL 72 (493)
T ss_pred CceEEEeccCccccHhhhhhhhhhhhcCCCCCCc--------cccCCCceeeeccccCCCceeEcCcEEEEecCCccccc
Confidence 7999999999999999999998776665554432 13456789999853 67999999999998763211
Q ss_pred ccc---------------ccc-cccCCcccccccC-----cccccCCCccccc---cchhhHHHHHHHHHHHhhhcCCcc
Q 037616 78 VRT---------------GTY-RQLFHPEQLISGK-----EDAANNFARGHYT---IGKEIVDLCLDRIRKLADNCTGLQ 133 (383)
Q Consensus 78 i~~---------------~~~-~~l~~~~~~~~~~-----~g~gnn~a~G~~~---~g~~~~~~~~d~ir~~~E~cD~lq 133 (383)
-+. ++| +-.|||+++..-. .+.+++|+.|+-. .+.+..|+++|+||+++|+||.+|
T Consensus 73 ~~~~~l~~~~l~~~v~~WSDy~r~~yhPrS~~~L~~~~~~~~~~~fd~fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQ 152 (493)
T cd06060 73 PEEGSLKVYNLEASVNVWSDYLYARLHPRSINVINQYNHDGTSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQ 152 (493)
T ss_pred ccccCcCCcccccchhhhhhcceeeeCCCceeeccchhcCCCCCCccccccChhhhcchhhHHHHHHHHHHHHHhCcccc
Confidence 110 112 2348999887653 2556677766322 345677999999999999999999
Q ss_pred ceeEEeecCCCccCCchHHHHHHhhhhhCCcceeEEEEecCCCC----CCccchhhhHHHhHHhhhhccccceecChH-H
Q 037616 134 GFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV----STSVVEPYNSVLSTHSLLEHTDVAVLLDNE-A 208 (383)
Q Consensus 134 gf~i~~sl~GGTGSG~~s~lle~l~~~yp~~~i~~~~v~P~~~~----~~~~v~~yNa~lsl~~l~~~~d~vi~~dN~-~ 208 (383)
||++++|++||| ||+|+.++|+|+|||||+.+++++++|.+.. .+.++++||++|++++|.+++|+++|+.-. .
T Consensus 153 GFqi~~sl~gG~-sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~~~~~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~~~ 231 (493)
T cd06060 153 GFQVLCDLHDGF-SGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASSDKNSIRVLNTALGLAQLSEHSSLFVPLSLSGT 231 (493)
T ss_pred cEEEEEecCCcc-cchHHHHHHHHHHhcCccceeEEEeCCCcccccccchhHHHHHHHHHHHHHHHhcCCEEEEEecccc
Confidence 999999999999 8999999999999999999999999997632 257899999999999999999999999543 2
Q ss_pred HHhhh-----hccCCCCCCChhhHHHHHHHHHhccccccccCCCCccchhhhccCCccCCccceeccccc-ccccccccc
Q 037616 209 IYDIC-----RRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYA-PVISAEKAY 282 (383)
Q Consensus 209 L~~~~-----~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~~g~~n~dl~~l~~nLvp~P~~~fl~~s~~-P~~~~~~~~ 282 (383)
++... ...+..+..+..+..+++|.+|.++|.+.|..+.. .+|.+|..+|.+.-| ++...+.+ |+-..
T Consensus 232 ~w~~~~~p~~~~~l~~d~~~~~htSAllA~aldT~TLp~Rl~~~~-~~m~~l~~~l~~~gR-ki~~~~~a~P~p~~---- 305 (493)
T cd06060 232 LWRKPGPPRTFPYLNYDAELPYHTSALLATALDTLTLPYRLKSSP-SSLSGLCDDLSFSGR-KVVAAGLALPFPMV---- 305 (493)
T ss_pred cccCCCCCCCCcccccCCCCchHHHHHHHHHHhhccccceeccCC-ccHHHHHHHhhhccc-hhhhhccCCCCCCC----
Confidence 22211 12234445577888999999999999999998755 578999999886554 66665443 44221
Q ss_pred ccccCHHHHHHHhcCCCC-CccccC-CCCCccccccccccccC
Q 037616 283 HEQLSVAEITNSAFEPSS-MMAKCD-PRHGKYMACCLMYRGDV 323 (383)
Q Consensus 283 ~~~~~~~~l~~~~~~~~~-~~~~~~-~~~~~~ls~~~~~RG~~ 323 (383)
...++.+++.++-...- ..+.++ +...++.+..++.||-.
T Consensus 306 -~~~~l~d~L~~~~~~~~~~~l~p~~~~~~~~~~qsv~~rG~~ 347 (493)
T cd06060 306 -GGQDLIDFLDQSDGAVPWLQLTPGCQIGTRCVIQSVVLRGIP 347 (493)
T ss_pred -CCCcHHHHHHhcCCCCCccccCCCCccCceeeeeeehhcCCC
Confidence 12345555554422111 122332 23467888889999953
No 21
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=100.00 E-value=1e-35 Score=292.94 Aligned_cols=227 Identities=21% Similarity=0.288 Sum_probs=194.2
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeccccc
Q 037616 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (383)
Q Consensus 1 MrEii~iqvGqcGnqIG~~~w~~~~~eh~~~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRailiD~e~~~i~~i~~ 80 (383)
|| |..|.+||||+.|-+++++. +. ..+.+|+||+|+||+|+..+++++.
T Consensus 1 m~-i~viGvGg~G~niv~~l~~~-----~~-------------------------~~~~~~~~~~iavntD~~~L~~l~~ 49 (349)
T cd02202 1 MR-VLIIGVGQAGGRIVDALNRH-----DK-------------------------RSGFGYCVGALAINTAKNDLKGLKH 49 (349)
T ss_pred CE-EEEEEeCCcHHHHHHHHHHh-----CC-------------------------CcCCccceeEEEEECCHHHHHhhhc
Confidence 77 88999999999999999873 00 0123688999999999999998754
Q ss_pred ccccccCCcccccccCcccccCCCccccccchhhHHHHHHHHHHHhhhcCC--ccceeEEeecCCCccCCchHHHHHHhh
Q 037616 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTG--LQGFLVFNAVGGGTGSGLGSLLLERLS 158 (383)
Q Consensus 81 ~~~~~l~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~--lqgf~i~~sl~GGTGSG~~s~lle~l~ 158 (383)
.+.++.++.|++.+....+.|.+..|+++.++..|.||+++|.||. +|+|+++||+|||||||+++.+++.++
T Consensus 50 -----~~~~~ki~~g~~~t~G~GaG~~~~~G~~~aee~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~iae~lk 124 (349)
T cd02202 50 -----IPAEDRILIGQSEVKGHGVGADRELGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAKELK 124 (349)
T ss_pred -----CCCCCEEEecCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccccccccEEEEecccCCCccccHHHHHHHHHH
Confidence 3467778888753333333333456799999999999999999997 999999999999999999999999999
Q ss_pred hhhCCcceeEEEEecCCCCCCccchhhhHHHhHHhhhhccccceecChHHHHhhhhccCCCCCCChhhHHHHHHHHHhcc
Q 037616 159 VDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSL 238 (383)
Q Consensus 159 ~~yp~~~i~~~~v~P~~~~~~~~v~~yNa~lsl~~l~~~~d~vi~~dN~~L~~~~~~~l~~~~~~~~~~N~~ia~~i~~~ 238 (383)
++|| +.+++++++|+.. +..+++||++++|++|.+++|++++|||++|+++|.. + .++|+++|++||+.|+.+
T Consensus 125 e~~~-~~~~~iv~~P~~~--eg~~~~~NA~~~l~~L~~~~D~viv~dNd~L~~~~~~-~---~~~f~~~N~~Ia~~i~~l 197 (349)
T cd02202 125 ERYE-EPVYALGVLPARE--EGERYSANAARSLDALSEEADAIILFDNDAWKRKGES-V---EEAYDRINEEIARRIGLL 197 (349)
T ss_pred HhCC-ccEEEEEEecCCC--CCchhhHHHHHHHHHHHHhCCEEEEEehHHHhhhccc-h---HHHHHHHHHHHHHHHHHH
Confidence 9999 8899999999974 5589999999999999999999999999999998742 2 379999999999999999
Q ss_pred cccccc-----CCCCccchhhhccCCccCCccceeccccc
Q 037616 239 TASLRF-----DGALNVDVTEFQTNLVPYPRIHFMLSSYA 273 (383)
Q Consensus 239 t~~~r~-----~g~~n~dl~~l~~nLvp~P~~~fl~~s~~ 273 (383)
+.+.|| ||.+|+|++|+.++|-.. .+.+..++
T Consensus 198 ~~~~r~~~~~~~g~invD~~dv~~~L~~~---G~~~iG~g 234 (349)
T cd02202 198 LRAGEANAGDSVGESVLDASEVINTLSGG---GFATIGYA 234 (349)
T ss_pred HHhhhcccCCCCCeEeccHHHHHHHhccC---CeEEEEEE
Confidence 999999 999999999999999765 56666664
No 22
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.97 E-value=7.8e-31 Score=253.67 Aligned_cols=272 Identities=17% Similarity=0.227 Sum_probs=203.3
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeccccc
Q 037616 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (383)
Q Consensus 1 MrEii~iqvGqcGnqIG~~~w~~~~~eh~~~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRailiD~e~~~i~~i~~ 80 (383)
|+ |..|.+|+||+.+-+++++. ++ . -.+.+.||+|.+.++.+..
T Consensus 1 ~~-i~viGvGg~G~n~v~~~~~~-----~~---------------------------~---~~~~iainTd~~~L~~~~a 44 (303)
T cd02191 1 AK-IAVIGFGGAGGNIVDKFLEY-----DK---------------------------E---GRSAVAVNTDAQDLLGLEA 44 (303)
T ss_pred CE-EEEEEECchHHHHHHHHHHc-----CC---------------------------C---CccEEEEECcHHHHhcCCC
Confidence 54 78899999999999999862 00 0 1468999999998887653
Q ss_pred ccccccCCcccccccCcccccCCCccccccchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhh
Q 037616 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (383)
Q Consensus 81 ~~~~~l~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~ 160 (383)
+.+-++.++ .+...|+|+||.. |++..++++|+||+++|.||. |++++|+|||||||+++.+++.++++
T Consensus 45 -~~ki~iG~~--~t~g~GaG~~~~~-----G~~~a~e~~~~I~~~le~~D~---v~i~aglGGGTGSG~ap~ia~~~ke~ 113 (303)
T cd02191 45 -ENRVLIGQA--RTKGLGAGANPEL-----GAEAAEEVQEAIDNIPVHVDM---VFITAGLGGGTGTGGAPVVAEHLKRI 113 (303)
T ss_pred -CcEEecCCc--cccCCCCCCCHHH-----HHHHHHHHHHHHHHHHcCCCE---EEEEeccCCccchhHHHHHHHHHHHh
Confidence 222222222 1234589999875 579999999999999999995 89999999999999999999999999
Q ss_pred hCCcceeEEEEecCCCCCCccchhhhHHHhHHhhhhccccceecChHHHHhhhhccCCCCCCChhhHHHHHHHHHhcccc
Q 037616 161 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240 (383)
Q Consensus 161 yp~~~i~~~~v~P~~~~~~~~v~~yNa~lsl~~l~~~~d~vi~~dN~~L~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~ 240 (383)
|+ .+++|+|.|+..|..+++|||.+++++|.+++|+++++||++|.++|.+ +.+. ++|+++|++|++.++++|.
T Consensus 114 ~~----~~~~vvt~Pf~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L~~~~~~-~~~~-~af~~~N~~ia~~i~~it~ 187 (303)
T cd02191 114 GT----LTVAVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIGEK-ASLE-GAFDHADEVLVRAVGGLFG 187 (303)
T ss_pred CC----CEEEEEeCCcccCCccchhhHHHHHHHHHHhCCEEEEEehHHHHHHhhc-CChH-HHHHHHHHHHHHHHHHHHH
Confidence 85 5666777766678899999999999999999999999999999999976 7775 4999999999999999999
Q ss_pred ccccCCCCccchhhhccCCccCCccceeccccccccccccccccccCHHHHHHHhcCCCCCccccCCCCCcccccccccc
Q 037616 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 320 (383)
Q Consensus 241 ~~r~~g~~n~dl~~l~~nLvp~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 320 (383)
++||||.+|+|++++.+.|- -..+-++....+.- .-...+.+++.++.. .+-.++.+..+-+ .+.+.
T Consensus 188 ~i~~~g~invD~~dv~~~l~-~~G~a~ig~g~~~g---------~~~~~~a~~~Al~~p-ll~~~~~~~A~~~--Lv~i~ 254 (303)
T cd02191 188 AIEIEGEINVDFADVKNVMD-GGGVAMVGYGSEDV---------TNRATEAVRKAALGP-LLLPCEIEGAEGA--LLVMA 254 (303)
T ss_pred hhccCCcccCCHHHHHHHhc-cCCeEEEEEEEecC---------chHHHHHHHHHHhCC-CCCCCCcccCCEE--EEEEE
Confidence 99999999999999988663 34333333322220 113445555555422 1222343333322 23334
Q ss_pred c--cCChhhHHHHHHhhhcc
Q 037616 321 G--DVVPKDVNAAVATIKTK 338 (383)
Q Consensus 321 G--~~~~~~i~~~~~~~~~~ 338 (383)
| +++.+++++..+.++.+
T Consensus 255 g~~~l~~~e~~~~~~~i~~~ 274 (303)
T cd02191 255 GPPDLNLKEIERVRKWLEEQ 274 (303)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 4 57888999988777553
No 23
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.96 E-value=1.1e-28 Score=239.40 Aligned_cols=271 Identities=16% Similarity=0.259 Sum_probs=195.4
Q ss_pred EEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceecccccccc
Q 037616 4 CISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTY 83 (383)
Q Consensus 4 ii~iqvGqcGnqIG~~~w~~~~~eh~~~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRailiD~e~~~i~~i~~~~~ 83 (383)
|..|.+|+||+.+-+.+++. ++ .+ ...+.+|+|...++.+.. +.
T Consensus 3 i~viGvGg~G~n~v~~l~~~-----~~---------------------------~~---~~~~a~ntD~~~L~~~~~-~~ 46 (304)
T cd02201 3 IKVIGVGGGGGNAVNRMIES-----GL---------------------------EG---VEFIAANTDAQALAKSKA-PN 46 (304)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC---------------------------CC---ceEEEEECCHHHHhcCCC-Cc
Confidence 67899999999999999872 00 00 467899999988887653 22
Q ss_pred cccCCcccccccCcccccCCCccccccchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhCC
Q 037616 84 RQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGK 163 (383)
Q Consensus 84 ~~l~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp~ 163 (383)
+-++.++ .+.-.|+|+||+.| ++..++..|+||+++|.||.+ +++||+|||||||+++.+++..+ +|+.
T Consensus 47 k~~ig~~--~t~g~Gag~~~~~g-----~~~a~~~~~~I~~~l~~~d~v---~i~aglGGGTGSG~ap~ia~~a~-e~g~ 115 (304)
T cd02201 47 KIQLGKE--LTRGLGAGGDPEVG-----RKAAEESREEIKEALEGADMV---FITAGMGGGTGTGAAPVIAKIAK-EMGA 115 (304)
T ss_pred EEEcCCC--CCCCCCCCCCHHHH-----HHHHHHHHHHHHHHHhCCCEE---EEeeccCCCcchhHHHHHHHHHH-HcCC
Confidence 3223322 13345889998855 678899999999999999986 99999999999999999776665 4653
Q ss_pred cceeEEEEecCCCCCCccchhhhHHHhHHhhhhccccceecChHHHHhhhhccCCCCCCChhhHHHHHHHHHhccccccc
Q 037616 164 KSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLR 243 (383)
Q Consensus 164 ~~i~~~~v~P~~~~~~~~v~~yNa~lsl~~l~~~~d~vi~~dN~~L~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r 243 (383)
.+++|+|.|+..|..+++|||.+++++|.+++|+++++||++|.++|.+.+.+.. +|+.+|++|++.++++|.++|
T Consensus 116 ---~~~~vvt~Pf~~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L~~~~~~~~~i~~-af~~~n~~ia~~i~~it~~~~ 191 (304)
T cd02201 116 ---LTVAVVTKPFSFEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLEVVDKNLPLLE-AFKLADDVLAQAVKGISDLIT 191 (304)
T ss_pred ---CEEEEEeCCccccchhHHHHHHHHHHHHHHhCCEEEEEecHHHHHhhccCCCHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 4555555554467789999999999999999999999999999999987777766 899999999999999999999
Q ss_pred cCCCCccchhhhccCCccCCccceeccccccccccccccccccCHHHHHHHhcCCCCCccccCCCCCccccccccccc--
Q 037616 244 FDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRG-- 321 (383)
Q Consensus 244 ~~g~~n~dl~~l~~nLvp~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG-- 321 (383)
+||.+|+|++|+.+.|-.- ..-++....+.- .-...+.+++.++..- +-..|.+..+.+- +.+.|
T Consensus 192 ~~g~invD~~dv~~vl~~~-G~a~ig~g~~~g---------~~r~~~Av~~Al~~pL-l~~~~i~~A~~~L--v~I~~~~ 258 (304)
T cd02201 192 KPGLINLDFADVKTVMKNK-GVALMGIGEASG---------ENRAIEAAEKAISSPL-LEDDSISGAKGVL--VNITGGS 258 (304)
T ss_pred cCccccCCHHHHHHHhccC-CeEEEEEEEecC---------chHHHHHHHHHHhCcC-cCCCChhcccEEE--EEEEcCC
Confidence 9999999999999877543 222222221110 0123444444443221 1112233323222 22334
Q ss_pred cCChhhHHHHHHhhhcc
Q 037616 322 DVVPKDVNAAVATIKTK 338 (383)
Q Consensus 322 ~~~~~~i~~~~~~~~~~ 338 (383)
+++..++++....++.+
T Consensus 259 ~l~l~e~~~~~~~i~~~ 275 (304)
T cd02201 259 DLTLEEVNEAAEIIKEK 275 (304)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 67888999888777653
No 24
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=99.95 E-value=1.7e-28 Score=241.03 Aligned_cols=272 Identities=14% Similarity=0.216 Sum_probs=195.1
Q ss_pred EEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceecccccccc
Q 037616 4 CISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTY 83 (383)
Q Consensus 4 ii~iqvGqcGnqIG~~~w~~~~~eh~~~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRailiD~e~~~i~~i~~~~~ 83 (383)
|..|.+|+||+.+-+.+++. ++ .-...+.+|+|...++.+.. +.
T Consensus 20 i~viGvGg~G~n~v~~l~~~-----~~------------------------------~~~~~iainTD~~~L~~~~a-~~ 63 (349)
T TIGR00065 20 IKVIGVGGGGNNTVNRMLEE-----GV------------------------------EGVEFIAINTDAQHLKTTKA-DK 63 (349)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC------------------------------CceEEEEEECCHHHHhcCCC-Ce
Confidence 78899999999999998773 00 01467889998887776642 22
Q ss_pred cccCCcccccccCcccccCCCccccccchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhCC
Q 037616 84 RQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGK 163 (383)
Q Consensus 84 ~~l~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp~ 163 (383)
+-++.++ .+.-.|+|+||+. |+++.++.+|.||+.+|.||.+ ++++|+|||||||+++.+++.+++ |+
T Consensus 64 ki~iG~~--~t~G~GaG~~~~~-----G~~~aee~~d~Ir~~le~~D~v---fI~aglGGGTGSG~apvia~~ake-~~- 131 (349)
T TIGR00065 64 KILIGKK--LTRGLGAGGNPEI-----GRKAAEESRDEIRKLLEGADMV---FITAGMGGGTGTGAAPVVAKIAKE-LG- 131 (349)
T ss_pred EEEcCCC--CCCCCCCCCCHHH-----HHHHHHHHHHHHHHHHhCCCEE---EEEEeccCccchhHHHHHHHHHHH-cC-
Confidence 2222222 1223488899874 6899999999999999999986 999999999999999966666655 54
Q ss_pred cceeEEEEecCCCCCCccchhhhHHHhHHhhhhccccceecChHHHHhhhhccCCCCCCChhhHHHHHHHHHhccccccc
Q 037616 164 KSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLR 243 (383)
Q Consensus 164 ~~i~~~~v~P~~~~~~~~v~~yNa~lsl~~l~~~~d~vi~~dN~~L~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r 243 (383)
+++++|+|.|...|..+++|||.++|++|.+++|+++++||++|.++|.+ +.+.. +|+.+|++|++.++++|.++|
T Consensus 132 --~l~vaivt~Pf~~Eg~~r~~nA~~~l~~L~~~~D~vividNd~L~~~~~~-~~i~~-af~~~N~iia~~i~~it~~ir 207 (349)
T TIGR00065 132 --ALTVAVVTKPFKFEGLKRRKKAEEGLERLKQAVDTLIVIPNDKLLEVVPN-LPLND-AFKVADDVLVRAVKGISELIT 207 (349)
T ss_pred --CCEEEEEeCCccccchhhHHHHHHHHHHHHHhCCEEEEEeCHHHHHhhcC-CCHHH-HHHHHHHHHHHHHHhHHHhhc
Confidence 45566655555578899999999999999999999999999999999977 77754 999999999999999999999
Q ss_pred cCCCCccchhhhccCCccCCccceeccccccccccccccccccCHHHHHHHhcCCCCCcccc-CCCCCccccccccccc-
Q 037616 244 FDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKC-DPRHGKYMACCLMYRG- 321 (383)
Q Consensus 244 ~~g~~n~dl~~l~~nLvp~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~ls~~~~~RG- 321 (383)
|||.+|.|++++.+-|- -...-++....+.-. . ..-...+.+++.++. .+... +.+..+-+-. .+.|
T Consensus 208 ~~g~iNvDf~dv~~vl~-~~G~a~iG~g~~~g~---~---~~~r~~~A~~~al~~--pLl~~~~i~~A~~~Lv--~i~~~ 276 (349)
T TIGR00065 208 KPGLINIDFADVRAVMS-GGGVAMMGIGEALGE---D---TANRAFEAVRKALSS--PLLDVDKISGAKGALV--HITGG 276 (349)
T ss_pred cCCcCcCCHHHHHHHHh-cCCeEEEEEEEecCC---c---chHHHHHHHHHHHhC--CCcCCcccccccEEEE--EEEcC
Confidence 99999999999988653 344444433333210 0 000234444444432 22222 2333222222 2333
Q ss_pred -cCChhhHHHHHHhhhcc
Q 037616 322 -DVVPKDVNAAVATIKTK 338 (383)
Q Consensus 322 -~~~~~~i~~~~~~~~~~ 338 (383)
++...++++....++.+
T Consensus 277 ~~l~l~ev~~~~~~i~~~ 294 (349)
T TIGR00065 277 ADLTLLEAEEIQEIITSE 294 (349)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 67888999988777553
No 25
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=99.95 E-value=5.4e-29 Score=211.45 Aligned_cols=116 Identities=57% Similarity=1.007 Sum_probs=106.2
Q ss_pred CccceeccccccccccccccccccCHHHHHHHhcCCCCCccccCCCCCccccccccccccCChhhHHHHHHhhhcccccc
Q 037616 263 PRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQ 342 (383)
Q Consensus 263 P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~i~~~~~~~~~~~~~~ 342 (383)
||+||++++|+|+.......++..++.||++++|+++|+|++|||++|+||||++++||+++++||++++.++|.+.+++
T Consensus 1 PrlHFl~~s~aP~~~~~~~~~~~~s~~~l~~~lf~~~n~m~~~~~~~gkyla~~~l~RG~v~~~di~~~i~~ik~~~~~~ 80 (126)
T PF03953_consen 1 PRLHFLLSSYAPLTSPEDSNYEKLSVQDLTRQLFDPKNQMVSCDPRQGKYLACALLYRGDVSPKDINEAIAKIKQKNSIQ 80 (126)
T ss_dssp TTT-EEEEEESSTSBTTSTTSSCCTHHHHHHHHTSGGGBSSSS-TTSS-EEEEEEEEEESSTHHHHHHHHHHHHCTSTTS
T ss_pred CCeeeecCccccccccchhhhhcccHhHhhHHHHhhhhhccccccccchhhhhhhccccccccchhhhHHHhhhhccccc
Confidence 89999999999999988888899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCceeeeeccCCccCCCCCccceeeeEEEecccCC
Q 037616 343 FVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTS 383 (383)
Q Consensus 343 f~~W~p~~~~~~~~~~~p~~~~~~~~~~~~~s~~~l~N~t~ 383 (383)
|++|+|++||+++|++||.+.+.+ +++++||+|+||
T Consensus 81 Fv~W~p~~~kv~~~~~~p~~~~~s-----~~s~~~LsNsTa 116 (126)
T PF03953_consen 81 FVDWIPTGFKVGICKVPPYGQPNS-----DRSGLMLSNSTA 116 (126)
T ss_dssp B-SSSTTCEEEEEESS-STSTTTS-----SEEEEEEEEEGG
T ss_pred eeeecCchhhcccccCCCcccCCC-----cceEEEeCChHH
Confidence 999999999999999999988855 588999999996
No 26
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton]
Probab=99.95 E-value=1e-27 Score=233.24 Aligned_cols=240 Identities=23% Similarity=0.352 Sum_probs=172.9
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCC----CCccccceeeeCCCCceec
Q 037616 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETG----AGKHVPRAVFVDLEPTVID 76 (383)
Q Consensus 1 MrEii~iqvGqcGnqIG~~~w~~~~~eh~~~~~g~~~~~~~~~~~~~~~~~~F~e~~----~~~~~pRailiD~e~~~i~ 76 (383)
||||+|||+|+..|.+|+|||+++..-.++.+|...+.. ....+ ++|++..+ ..+|+||+|++|+....-.
T Consensus 1 mrEilTiq~g~~AnfvgtHfwN~Qea~l~~~~d~~~~~~----~~~~n-dvlyr~g~~~~~~~tytPRl~l~Dl~g~~g~ 75 (483)
T KOG2530|consen 1 MREILTIQVGHFANFVGTHFWNQQEAYLGLATDSEEPPG----ELCPN-DVLYRTGRTDHGQITYTPRLLLVDLKGELGT 75 (483)
T ss_pred CceEEEEEeeccccchhhhhcchhhHhhccCCcccCChh----hcCcc-hhhhhccccccCceeeccceeEEecCccccc
Confidence 999999999999999999999997777777665433221 11122 78888753 4589999999997543210
Q ss_pred c------------------------cccc---------------------------------------c----ccccCCc
Q 037616 77 E------------------------VRTG---------------------------------------T----YRQLFHP 89 (383)
Q Consensus 77 ~------------------------i~~~---------------------------------------~----~~~l~~~ 89 (383)
. ++.. . .+..|||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~g~~t~~~~~pr~~~~~~qs~~~~~~~l~~~~~~~i~~e~~~~~~~sv~~WsDFlr~~yHp 155 (483)
T KOG2530|consen 76 LKYQGELYNDSHLGNEDAWKGKLTTIKTEPRDRNPELQSLLSAEAELPELNAEEIEYESDYSLLASVPSWSDFLRNHYHP 155 (483)
T ss_pred cccchhhccchhcccccccccccceeccccccCChHHhhhccccCcccccchhhhccccccccccccchHHHHHHhhcCc
Confidence 0 0000 0 1244666
Q ss_pred ccccccC-----cccccCCCccccccc-hhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhCC
Q 037616 90 EQLISGK-----EDAANNFARGHYTIG-KEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGK 163 (383)
Q Consensus 90 ~~~~~~~-----~g~gnn~a~G~~~~g-~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp~ 163 (383)
+.+..-+ .++-++|.-||-..- ..+.+++.|+||..+|+||.+|||++..++.+|+| |+++.++|.|+|||++
T Consensus 156 ~tl~~l~~~~~d~~a~~~y~iG~d~f~E~s~~eE~~DrLr~~VEECD~lQGFq~l~Did~Gfg-G~as~~le~l~DEys~ 234 (483)
T KOG2530|consen 156 RTLNPLNGLFQDSGAFDRYSIGYDVFTENSYQEEFCDRLRFYVEECDTLQGFQLLSDIDDGFG-GFASKLLEELQDEYSK 234 (483)
T ss_pred cccccCCccccChHHhhccccchhhhhccchhHHHHHHHHHHHHhcccccceEEEEecCCCch-hHHHHHHHHHHHhhcC
Confidence 6554332 122244444432211 12567899999999999999999999999999996 9999999999999999
Q ss_pred cceeEEEEecCCCC-CCccch------hhhHHHhHHhhhhccccceecChHHHHhhhhccCCCCCCChhhHHHHHHHHHh
Q 037616 164 KSKLGFTVYPSPQV-STSVVE------PYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVIS 236 (383)
Q Consensus 164 ~~i~~~~v~P~~~~-~~~~v~------~yNa~lsl~~l~~~~d~vi~~dN~~L~~~~~~~l~~~~~~~~~~N~~ia~~i~ 236 (383)
+.+++++..|.+.. ++.... -.|.++++.+|.+.|+.++|+.--. .++ ...+..+++|.++.
T Consensus 235 ~~v~tw~~~~~p~s~~~s~k~ls~~~~~lN~als~~qLs~~~~l~~PL~~~~-------~~~----~~~~tsA~~a~~~d 303 (483)
T KOG2530|consen 235 KAVFTWGHNPRPFSQDFSMKRLSNKWLKLNKALSLSQLSQECSLYFPLSTAS-------GLG----DLWETSAKLARAFD 303 (483)
T ss_pred CceeccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHhhhcceeecccccc-------ccc----cHHHHHHHHHhhcc
Confidence 99999999986542 333333 4579999999999999999973221 111 46788899999999
Q ss_pred ccccccccCCCCccchhhhcc
Q 037616 237 SLTASLRFDGALNVDVTEFQT 257 (383)
Q Consensus 237 ~~t~~~r~~g~~n~dl~~l~~ 257 (383)
++|.|.|.-+..+.-+.++.+
T Consensus 304 s~tlptr~~ssS~~~~~d~ls 324 (483)
T KOG2530|consen 304 SITLPTRLISSSNLRQRDTLS 324 (483)
T ss_pred cccccceecchhHHHHHHHHH
Confidence 999999998886666665544
No 27
>PRK13018 cell division protein FtsZ; Provisional
Probab=99.94 E-value=1.1e-26 Score=229.27 Aligned_cols=269 Identities=19% Similarity=0.301 Sum_probs=198.3
Q ss_pred EEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceecccccccc
Q 037616 4 CISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTY 83 (383)
Q Consensus 4 ii~iqvGqcGnqIG~~~w~~~~~eh~~~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRailiD~e~~~i~~i~~~~~ 83 (383)
|..|.||+||+.+-+++++. ++ .+ ...|.||+|...++.+... .
T Consensus 31 I~ViGvGGaG~N~v~~m~~~-----~~---------------------------~~---v~~iaiNTD~q~L~~~~a~-~ 74 (378)
T PRK13018 31 IVVVGCGGAGNNTINRLYEI-----GI---------------------------EG---AETIAINTDAQHLAMIKAD-K 74 (378)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC---------------------------CC---ceEEEEECCHHHHhcCCCC-c
Confidence 78899999999999999862 00 00 3578999999877765432 1
Q ss_pred cccCCcccccccCcccccCCCccccccchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhCC
Q 037616 84 RQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGK 163 (383)
Q Consensus 84 ~~l~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp~ 163 (383)
+-++.++ ++.-.|+|++|. .|++..++..|.||+.+|.||. |++++|||||||||+++.+++.+++ ++
T Consensus 75 ki~iG~~--~t~G~GaG~dp~-----~G~~aaee~~d~I~~~le~~D~---vfI~aGLGGGTGSGaapvIa~iake-~g- 142 (378)
T PRK13018 75 KILIGKS--LTRGLGAGGDPE-----VGRKAAEESRDEIKEVLKGADL---VFVTAGMGGGTGTGAAPVVAEIAKE-QG- 142 (378)
T ss_pred EEecCCc--cCCCCCCCCChH-----HHHHHHHHHHHHHHHHhcCCCE---EEEEeeccCcchhhHHHHHHHHHHH-cC-
Confidence 2112211 222347888866 4578889999999999999997 7999999999999999999999987 44
Q ss_pred cceeEEEEecCCCCCCccchhhhHHHhHHhhhhccccceecChHHHHhhhhccCCCCCCChhhHHHHHHHHHhccccccc
Q 037616 164 KSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLR 243 (383)
Q Consensus 164 ~~i~~~~v~P~~~~~~~~v~~yNa~lsl~~l~~~~d~vi~~dN~~L~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r 243 (383)
...+++++.|+. .+...++.||.++|++|.+++|+++++||++|.++| ..+.+.. +|+.+|++|++.++++|.++|
T Consensus 143 ~ltv~vVt~Pf~--~EG~~r~~nA~~gL~~L~e~~D~vividNd~L~~i~-~~~~i~~-af~~~N~iIa~~I~~It~~i~ 218 (378)
T PRK13018 143 ALVVGVVTKPFK--FEGRARMQKAEEGIERLREAADTVIVIDNNRLLDIV-PNLPIAD-AFSVADEVIAETVKGITETIT 218 (378)
T ss_pred CCeEEEEEcCcc--cccHhHHHHHHHHHHHHHHhCCEEEEEecHHHHHHH-hcCCHHH-HHHHHHHHHHHHHHhhhhhcc
Confidence 455677788876 566789999999999999999999999999999999 6676664 899999999999999999999
Q ss_pred cCCCCccchhhhccCCccCCccceeccccccccccccccccccCHHHHHHHhcCCCCCccccCCCCCccccccccccc--
Q 037616 244 FDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRG-- 321 (383)
Q Consensus 244 ~~g~~n~dl~~l~~nLvp~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG-- 321 (383)
|||.+|.|++++.+-|- -..+-++....+. ..-...+.+++.++.. ++.++....+-+ .+.+.|
T Consensus 219 ~~G~iN~Df~dv~~vl~-~~G~a~iG~G~a~---------g~~r~~~Av~~Al~sp--LL~~di~~A~~~--Lv~I~g~~ 284 (378)
T PRK13018 219 KPSLINLDFADVKSVMK-GGGVAMMGVGEAK---------GQNRAMEAVRAALANP--LLDVDYRGAKGA--LVHITGGP 284 (378)
T ss_pred cCCceecCHHHHHHHhc-cCCEEEEEEEEec---------CCcHHHHHHHHHHhCC--CcCCChhhhceE--EEEEECCC
Confidence 99999999999988653 3333333322221 1113455555555433 344555443322 233445
Q ss_pred cCChhhHHHHHHhhhcc
Q 037616 322 DVVPKDVNAAVATIKTK 338 (383)
Q Consensus 322 ~~~~~~i~~~~~~~~~~ 338 (383)
+++..++++....++.+
T Consensus 285 ~l~l~ev~~~~~~i~~~ 301 (378)
T PRK13018 285 DLTLKEANEAASRITEE 301 (378)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 67888999888776553
No 28
>PRK09330 cell division protein FtsZ; Validated
Probab=99.92 E-value=7.2e-25 Score=216.65 Aligned_cols=273 Identities=15% Similarity=0.232 Sum_probs=195.7
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeccccccc
Q 037616 3 ECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT 82 (383)
Q Consensus 3 Eii~iqvGqcGnqIG~~~w~~~~~eh~~~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRailiD~e~~~i~~i~~~~ 82 (383)
.|-.|.||+||+.+-+++++. ++ .+ ...+.+|+|...++.+...
T Consensus 15 ~IkViGvGG~G~Nav~~m~~~-----~~---------------------------~~---v~fia~NTD~q~L~~~~a~- 58 (384)
T PRK09330 15 VIKVIGVGGGGGNAVNRMIEE-----GI---------------------------QG---VEFIAANTDAQALLKSKAP- 58 (384)
T ss_pred eEEEEEECCcHHHHHHHHHHc-----CC---------------------------CC---ceEEEEeCcHHHHhcCCCC-
Confidence 377899999999999998873 00 00 2468899988877765432
Q ss_pred ccccCCcccccccCcccccCCCccccccchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhC
Q 037616 83 YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 162 (383)
Q Consensus 83 ~~~l~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp 162 (383)
.+-++.++ ++.-.|+|+||. .|++..++..|.||+.+|.||.+ +++++||||||||.++. +..+..+|+
T Consensus 59 ~ki~lG~~--~t~GlGaG~~pe-----~G~~aaee~~e~I~~~l~~~D~v---fI~AGmGGGTGTGaapv-IA~iake~g 127 (384)
T PRK09330 59 VKIQLGEK--LTRGLGAGANPE-----VGRKAAEESREEIREALEGADMV---FITAGMGGGTGTGAAPV-VAEIAKELG 127 (384)
T ss_pred eEEEcCCc--ccccCCCCCCHH-----HHHHHHHHHHHHHHHHHcCCCEE---EEEecCCCcccHHHHHH-HHHHHHHcC
Confidence 22122221 122347888876 56899999999999999999988 99999999999999995 555556664
Q ss_pred CcceeEEEEecCCCCCCccchhhhHHHhHHhhhhccccceecChHHHHhhhhccCCCCCCChhhHHHHHHHHHhcccccc
Q 037616 163 KKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASL 242 (383)
Q Consensus 163 ~~~i~~~~v~P~~~~~~~~v~~yNa~lsl~~l~~~~d~vi~~dN~~L~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~ 242 (383)
+++++|+|.|+..|..+++|||.++|++|.+++|++|++||++|.+++.+.+.+.. +|+.+|++|++.+.+++..+
T Consensus 128 ---~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vIvi~Nd~L~~~~~~~~~l~~-Af~~ad~vL~~~v~~It~~i 203 (384)
T PRK09330 128 ---ILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLLEVVDKKTPLLD-AFKAADDVLRQAVQGITDLI 203 (384)
T ss_pred ---CcEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEEEEecHHHHhhccCCCCHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 67788887777788999999999999999999999999999999999977777665 99999999999999999999
Q ss_pred ccCCCCccchhhhccCCccCCccceeccccccccccccccccccCHHHHHHHhcCCCCCccc-cCCCCCccccccccccc
Q 037616 243 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAK-CDPRHGKYMACCLMYRG 321 (383)
Q Consensus 243 r~~g~~n~dl~~l~~nLvp~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~ls~~~~~RG 321 (383)
++||.+|.|++++.+-|- -...-++....+.= .-...+.+++.++. .+.. ++....+-+-+.+...-
T Consensus 204 ~~pG~iNvDfaDvk~vm~-~~G~a~~G~G~a~g---------~~ra~~A~~~Ai~s--pLl~~~~i~~A~~vLv~I~g~~ 271 (384)
T PRK09330 204 TKPGLINLDFADVKTVMS-EMGLAMMGIGEASG---------EDRAREAAEKAISS--PLLEDVDISGAKGVLVNITGGP 271 (384)
T ss_pred hcCCcccCCHHHHHHHHh-cCCeEEEEEEEecC---------ccHHHHHHHHHHhC--cCcCCCChhhcceEEEEEECCC
Confidence 999999999999987654 22333333332210 11233334444431 1221 33333222222222222
Q ss_pred cCChhhHHHHHHhhhcc
Q 037616 322 DVVPKDVNAAVATIKTK 338 (383)
Q Consensus 322 ~~~~~~i~~~~~~~~~~ 338 (383)
+++..|+++....++.+
T Consensus 272 ~l~l~e~~~~~~~i~~~ 288 (384)
T PRK09330 272 DLTLFEVEEAAEIIREA 288 (384)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 68888999888776553
No 29
>PF14881 Tubulin_3: Tubulin domain
Probab=99.80 E-value=2.3e-19 Score=161.01 Aligned_cols=117 Identities=27% Similarity=0.413 Sum_probs=95.8
Q ss_pred HHHHHH-HHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhCCcce-eEEEEecCCCCCC-----ccchhhhHH
Q 037616 116 DLCLDR-IRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSK-LGFTVYPSPQVST-----SVVEPYNSV 188 (383)
Q Consensus 116 ~~~~d~-ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp~~~i-~~~~v~P~~~~~~-----~~v~~yNa~ 188 (383)
+++.|+ ||.++|+||.+||||++.++.+|+| |+++.++|+|+|||||+.+ +.+++.+...... ...+..|.+
T Consensus 57 ~d~~D~~lR~f~EECD~lQGfQ~~~d~d~gwg-Gfas~~Le~L~DEy~k~~i~~~~~~~~~~~~~~~~~~~~~~~~~N~a 135 (180)
T PF14881_consen 57 EDFFDRDLRFFLEECDSLQGFQVLTDVDDGWG-GFASSLLEHLRDEYPKKPIIWVWGLRDPSSSSRDAPRKRRLRLLNKA 135 (180)
T ss_pred hHHHHHHHHHHHHHcccccceEEEecCCCchH-hHHHHHHHHHHHHcCCCceEEeecCCCccccccchhhHHHHHHHHHH
Confidence 456665 9999999999999999999999996 9999999999999999996 5555554332111 124568999
Q ss_pred HhHHhhhhccccceecChHHHHhhhhccCCCCCCChhhHHHHHHHHHhcccccccc
Q 037616 189 LSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRF 244 (383)
Q Consensus 189 lsl~~l~~~~d~vi~~dN~~L~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r~ 244 (383)
+++..|.+.+++++|+.... +..+..+..+++|.+|.++|.|.|.
T Consensus 136 ~s~~~L~~~ssl~vPl~~~~-----------d~~s~~htSai~A~aidT~TLp~RL 180 (180)
T PF14881_consen 136 LSLSELSEQSSLFVPLSTLS-----------DASSNWHTSAILAAAIDTITLPYRL 180 (180)
T ss_pred HHHHHHHhhCCEEEecCCCC-----------cCCCcHHHHHHHHHHHHhccccCCC
Confidence 99999999999999997200 2346679999999999999999984
No 30
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=99.62 E-value=2.1e-15 Score=146.55 Aligned_cols=206 Identities=16% Similarity=0.243 Sum_probs=157.4
Q ss_pred EEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceecccccccc
Q 037616 4 CISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTY 83 (383)
Q Consensus 4 ii~iqvGqcGnqIG~~~w~~~~~eh~~~~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRailiD~e~~~i~~i~~~~~ 83 (383)
|..|.+|+||+.+-+++-+. ++. + ..-+.+.+|-..+..++.
T Consensus 14 I~VIGvGg~G~n~v~~m~~~-----~~~---------------------------g---ve~ia~nTD~q~L~~~~a--- 55 (338)
T COG0206 14 IKVIGVGGAGGNAVNRMIEE-----GVE---------------------------G---VEFIAINTDAQALKSSKA--- 55 (338)
T ss_pred EEEEEeCCcchHHHHHHHHh-----hhC---------------------------c---eEEEEeccCHHHHhcccc---
Confidence 88999999999999887652 211 0 123444444444443321
Q ss_pred cccCCcccccccCcccccCCCccccccchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhCC
Q 037616 84 RQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGK 163 (383)
Q Consensus 84 ~~l~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp~ 163 (383)
++.+..|..-...--+.+....|++..++..+.|++.++..| -++++.++|||||+|.++.+++.+++ ..
T Consensus 56 -----~~ki~iG~~~t~GlGaGa~P~vG~~aAee~~~~I~~~l~g~d---mvfitaG~GGGTGtGaaPVvakiake--~g 125 (338)
T COG0206 56 -----DRKILIGESITRGLGAGANPEVGRAAAEESIEEIEEALKGAD---MVFVTAGMGGGTGTGAAPVVAEIAKE--LG 125 (338)
T ss_pred -----CeEEEeccceeeccCCCCCcHHHHHHHHHHHHHHHHHhccCC---eEEEEeeecCCccccccHHHHHHHHh--cC
Confidence 112222322111112333388899999999999999999888 45899999999999999999999999 36
Q ss_pred cceeEEEEecCCCCCCccchhhhHHHhHHhhhhccccceecChHHHHhhhhccCCCCCCChhhHHHHHHHHHhccccccc
Q 037616 164 KSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLR 243 (383)
Q Consensus 164 ~~i~~~~v~P~~~~~~~~v~~yNa~lsl~~l~~~~d~vi~~dN~~L~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~r 243 (383)
...++++++|+. .|...+.-|+..++..|.+++|.+|+++|+.|.+... ...+. .+|...|.++++.+.+++..+.
T Consensus 126 ~ltvavvt~Pf~--~EG~~r~~~A~~gi~~L~~~~DtlIvi~Ndkll~~~~-~~~~~-~Af~~ad~vl~~~v~~i~e~I~ 201 (338)
T COG0206 126 ALTVAVVTLPFS--FEGSPRMENAEEGIEELREVVDTLIVIPNDKLLKGKD-KTPIA-EAFNEADDVLGNAVKGITELIT 201 (338)
T ss_pred CcEEEEEEecch--hcCchHHHHHHHHHHHHHHhCCcEEEEecHHHHhccC-cccHH-HHHHHHHHHHHHHHHHHHHHhc
Confidence 777888888887 4666888999999999999999999999999998764 33332 3799999999999999999999
Q ss_pred cCCCCccchhhhccCCcc
Q 037616 244 FDGALNVDVTEFQTNLVP 261 (383)
Q Consensus 244 ~~g~~n~dl~~l~~nLvp 261 (383)
-||.+|+|++++.+-+-.
T Consensus 202 ~~glinvDfaDv~~vm~~ 219 (338)
T COG0206 202 KPGLVNVDFADVRTVMKG 219 (338)
T ss_pred cCceEeecHHHHHHHHhc
Confidence 999999999999887665
No 31
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=99.14 E-value=4e-11 Score=100.08 Aligned_cols=64 Identities=25% Similarity=0.415 Sum_probs=47.8
Q ss_pred eeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccC----CCCccccceeeeCCCCc
Q 037616 2 RECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSET----GAGKHVPRAVFVDLEPT 73 (383)
Q Consensus 2 rEii~iqvGqcGnqIG~~~w~~~~~eh~~~~~g~~~~~~~~~~~~~~~~~~F~e~----~~~~~~pRailiD~e~~ 73 (383)
|||||||+|+..|.||+|||+. +|..+..+.... ....+.+++|+++ +..+|+||+|++|+...
T Consensus 1 ~EIiTlq~G~~aN~vgtHfwN~--Qe~~~~y~~~~~------~~~i~~dvlfR~g~~~~g~~TYtPRlL~~Dlkg~ 68 (115)
T PF10644_consen 1 REIITLQLGHYANFVGTHFWNI--QESYLPYDPDEK------PSEIDHDVLFREGITLSGTVTYTPRLLLFDLKGG 68 (115)
T ss_pred CcEEEEEcccccCcHHHhhhhh--hhcccccCcccc------CcccCCceEEecccCcCCCeeECCcEEEEecCCC
Confidence 7999999999999999999996 555443222111 0123578999985 34699999999998665
No 32
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=98.92 E-value=9.7e-10 Score=91.36 Aligned_cols=92 Identities=27% Similarity=0.424 Sum_probs=75.7
Q ss_pred CccchhhhccCCccCCccceeccccccccccccccccccCHHHHHH--HhcCCCCCccccCCCCCccccccccccccCCh
Q 037616 248 LNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITN--SAFEPSSMMAKCDPRHGKYMACCLMYRGDVVP 325 (383)
Q Consensus 248 ~n~dl~~l~~nLvp~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~ 325 (383)
+|.|++++.++|+|+| |++++++|.... .+..+..+++. .++++++++..+++.. |+++.. ++..
T Consensus 1 in~D~~dl~~~L~p~~---~~~~~~~~~~~~----~~~~~a~~~~~~~~l~~~~~~~~a~~~~~--~l~~~~----~~~~ 67 (120)
T smart00865 1 INVDFADVKTVMVPMG---FAMMGIGPASGE----NRALEAAELAISSPLLEPSNIMGAKGVLV--NITGGP----DLTL 67 (120)
T ss_pred CCCchHHHHHhccCCC---eEEEEEEEecCC----ChHHHHHHHHHhCcccCCcchhhcCceEE--EEEcCC----CCCH
Confidence 5789999999999999 999999998762 34567777777 8899988888777653 888875 7899
Q ss_pred hhHHHHHHhhhcccc-cceeecCC-CCce
Q 037616 326 KDVNAAVATIKTKRT-IQFVDWCP-TGFK 352 (383)
Q Consensus 326 ~~i~~~~~~~~~~~~-~~f~~W~p-~~~~ 352 (383)
+|+.+++..++.+.. ..|+.|.| .+++
T Consensus 68 ~ev~~~~~~i~~~~~~~~~v~w~~~~~~~ 96 (120)
T smart00865 68 KEVNEAMERIREKADPDAFIIWGPVIDEE 96 (120)
T ss_pred HHHHHHHHHHHHhcCCCceEEEccccCCc
Confidence 999999999887755 78999999 5554
No 33
>PF13809 Tubulin_2: Tubulin like
Probab=97.99 E-value=0.00011 Score=72.82 Aligned_cols=104 Identities=19% Similarity=0.099 Sum_probs=63.7
Q ss_pred cccCcccccCCCccccccchhhHHHHHHHHHHHhh---------hc-CCccceeEEeecCCCccCCchHHHHHHhhhhh-
Q 037616 93 ISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLAD---------NC-TGLQGFLVFNAVGGGTGSGLGSLLLERLSVDY- 161 (383)
Q Consensus 93 ~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E---------~c-D~lqgf~i~~sl~GGTGSG~~s~lle~l~~~y- 161 (383)
.....|||...+.|.... -...+++.+.|++.++ .. +.-=-++|+.|++||||||+---++-.||+.+
T Consensus 99 ~~~~~GAgq~R~~GRla~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~V~Vv~SlaGGTGSG~~lDia~~lr~~~~ 177 (345)
T PF13809_consen 99 TPLSAGAGQIRALGRLAF-FSNYQEIREALEAALDNFMQERLGGKGGGGGLNVFVVGSLAGGTGSGMFLDIAYLLRDILK 177 (345)
T ss_pred CchhcCCCCcccchHHHH-HHHHHHHHHHHHHHHHHHhhhhccccCCCCCcEEEEEEecCCccchhHHHHHHHHHHHHhh
Confidence 344567887776665332 1222344444444444 11 00012788999999999999999999999976
Q ss_pred ----CCcceeEEEEecCCCCCC---ccchhhhHHHhHHhhhhc
Q 037616 162 ----GKKSKLGFTVYPSPQVST---SVVEPYNSVLSTHSLLEH 197 (383)
Q Consensus 162 ----p~~~i~~~~v~P~~~~~~---~~v~~yNa~lsl~~l~~~ 197 (383)
....+..+.+.|...... .....-|+.-+|.+|..+
T Consensus 178 ~~~~~~~~i~~~~~lP~~f~~~~~~~~~~~aNayAAL~EL~~~ 220 (345)
T PF13809_consen 178 QPGQDNPRIYGFFVLPDAFPSIPGGGERVRANAYAALKELDYL 220 (345)
T ss_pred cccCCCceEEEEEECCcccccCCcchhhhhhHHHHHHHHHHHH
Confidence 345678888889853221 133445776666666544
No 34
>PLN02847 triacylglycerol lipase
Probab=83.66 E-value=4.7 Score=42.69 Aligned_cols=115 Identities=20% Similarity=0.245 Sum_probs=64.0
Q ss_pred ccccccCCCCccccc-eeeeCCCCceeccccccccc--c----------cCCcccccccCccc----ccCCCccccccch
Q 037616 50 NTFFSETGAGKHVPR-AVFVDLEPTVIDEVRTGTYR--Q----------LFHPEQLISGKEDA----ANNFARGHYTIGK 112 (383)
Q Consensus 50 ~~~F~e~~~~~~~pR-ailiD~e~~~i~~i~~~~~~--~----------l~~~~~~~~~~~g~----gnn~a~G~~~~g~ 112 (383)
++++.....+.|.|. .|++|-+.+.|=-.-+|... + .|++..+ ...|. ...--+|++...+
T Consensus 154 DVL~~~~ks~i~kPaffVavDh~~K~IVVsIRGT~Si~D~LTDL~~~~vPf~~s~l--~~gG~~n~~~G~AH~Gml~AAr 231 (633)
T PLN02847 154 DVLIQKPKAGILKPAFTIIRDENSKCFLLLIRGTHSIKDTLTAATGAVVPFHHSVL--HDGGVSNLVLGYAHCGMVAAAR 231 (633)
T ss_pred HEEEeecccccCCCCeEEEEeCCCCEEEEEECCCCCHHHHHHhcccccccCCcccc--cccCcccCcCCccCccHHHHHH
Confidence 455555566777776 58888777644222222111 0 1111111 11111 0112334444445
Q ss_pred hhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhh--hhCCcceeEEE
Q 037616 113 EIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSV--DYGKKSKLGFT 170 (383)
Q Consensus 113 ~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~--~yp~~~i~~~~ 170 (383)
.+.+.+...|++.++++...+=+++-||||||+. +.+.-.|++ +|++...++|+
T Consensus 232 wI~~~i~~~L~kal~~~PdYkLVITGHSLGGGVA----ALLAilLRe~~~fssi~CyAFg 287 (633)
T PLN02847 232 WIAKLSTPCLLKALDEYPDFKIKIVGHSLGGGTA----ALLTYILREQKEFSSTTCVTFA 287 (633)
T ss_pred HHHHHHHHHHHHHHHHCCCCeEEEeccChHHHHH----HHHHHHHhcCCCCCCceEEEec
Confidence 6677778888889999988877888899998763 444444554 45665555554
No 35
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=71.94 E-value=6.2 Score=33.79 Aligned_cols=53 Identities=17% Similarity=0.259 Sum_probs=36.7
Q ss_pred ccccccchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhh
Q 037616 105 RGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDY 161 (383)
Q Consensus 105 ~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~y 161 (383)
+|++.....+.+.+.+.+++...++..-+-+++-||+||+ ++..+...++...
T Consensus 1 ~Gf~~~~~~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~----lA~l~a~~~~~~~ 53 (153)
T cd00741 1 KGFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGA----LAGLAGLDLRGRG 53 (153)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHH----HHHHHHHHHHhcc
Confidence 3566666777777888887777666777777888999876 4455555566553
No 36
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=69.36 E-value=4.7 Score=37.08 Aligned_cols=75 Identities=17% Similarity=0.283 Sum_probs=48.0
Q ss_pred ccCCCccccccchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhCCcceeEEEEecCCCCCC
Q 037616 100 ANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVST 179 (383)
Q Consensus 100 gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp~~~i~~~~v~P~~~~~~ 179 (383)
+....+|++..-..+.+++.+.+++..++....+=++.-|||||+ +++.+.-.|+..++... +...+|-.|..++
T Consensus 96 ~~~vh~Gf~~~~~~~~~~~~~~~~~~~~~~p~~~i~vtGHSLGGa----iA~l~a~~l~~~~~~~~-i~~~tFg~P~vg~ 170 (229)
T cd00519 96 GGKVHSGFYSAYKSLYNQVLPELKSALKQYPDYKIIVTGHSLGGA----LASLLALDLRLRGPGSD-VTVYTFGQPRVGN 170 (229)
T ss_pred CcEEcHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEccCHHHH----HHHHHHHHHHhhCCCCc-eEEEEeCCCCCCC
Confidence 344566777666777788888888888887777777888999876 44555556665543322 3344444444333
No 37
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=66.93 E-value=5.1 Score=33.81 Aligned_cols=41 Identities=20% Similarity=0.443 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhhcCCccceeEEeecCCCccCCch-HHHHHHhhhh
Q 037616 116 DLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLG-SLLLERLSVD 160 (383)
Q Consensus 116 ~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~-s~lle~l~~~ 160 (383)
+...++|++.+++++. +|++++.+| ||| -+- ...+|.+.++
T Consensus 42 gt~~~~i~~ai~~~~~-dGVlVltDL-Gss--p~n~~~a~e~~~~~ 83 (124)
T PRK14484 42 GTSFDQIQEAIEKNES-DGVLIFFDL-GSA--EMNAEMAIEMLDGE 83 (124)
T ss_pred cchHHHHHHHHHhcCc-CCeEEEEeC-CCh--HHHHHHHHHhcCCC
Confidence 4566888888999999 999999999 776 333 3334555444
No 38
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=66.80 E-value=7.6 Score=31.85 Aligned_cols=33 Identities=15% Similarity=0.400 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHhhhcCCccceeEEeecCCCcc
Q 037616 114 IVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTG 146 (383)
Q Consensus 114 ~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTG 146 (383)
-.++..+++++.+++.+.-+|++++.+++|||-
T Consensus 39 ~~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp 71 (116)
T PF03610_consen 39 SIEDFEEKLEEAIEELDEGDGVLILTDLGGGSP 71 (116)
T ss_dssp CHHHHHHHHHHHHHHCCTTSEEEEEESSTTSHH
T ss_pred CHHHHHHHHHHHHHhccCCCcEEEEeeCCCCcc
Confidence 345677788888888888889999999999873
No 39
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=65.22 E-value=4.4 Score=33.77 Aligned_cols=56 Identities=20% Similarity=0.303 Sum_probs=36.7
Q ss_pred Cccccccch-hhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhCC
Q 037616 104 ARGHYTIGK-EIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGK 163 (383)
Q Consensus 104 a~G~~~~g~-~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp~ 163 (383)
..|++..-. ...+++.+.|++.+++.....=++.-|||||+ ++..+.-.+.+..+.
T Consensus 35 h~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGa----lA~l~a~~l~~~~~~ 91 (140)
T PF01764_consen 35 HSGFLDAAEDSLYDQILDALKELVEKYPDYSIVITGHSLGGA----LASLAAADLASHGPS 91 (140)
T ss_dssp EHHHHHHHHCHHHHHHHHHHHHHHHHSTTSEEEEEEETHHHH----HHHHHHHHHHHCTTT
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHhcccCccchhhccchHHH----HHHHHHHhhhhcccc
Confidence 445554444 66778888888888776654445666999875 556666666665543
No 40
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=61.68 E-value=7.8 Score=32.87 Aligned_cols=50 Identities=18% Similarity=0.364 Sum_probs=33.2
Q ss_pred CccCCchHHHHHHhhhhhCC-cceeEEEEecCCCCCCccchhhhHHHhHHhhhhccccceecChH
Q 037616 144 GTGSGLGSLLLERLSVDYGK-KSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNE 207 (383)
Q Consensus 144 GTGSG~~s~lle~l~~~yp~-~~i~~~~v~P~~~~~~~~v~~yNa~lsl~~l~~~~d~vi~~dN~ 207 (383)
|-|.|+|..+++.||+++|+ ..+++.+. |++-+-.-|..-+|----=+|.
T Consensus 7 GQGGGiG~~iv~~lr~~~~~~~eI~AlGT--------------Na~AT~~MlKaGA~~gATGENa 57 (131)
T PF12953_consen 7 GQGGGIGKQIVEKLRKELPEEVEIIALGT--------------NAIATSAMLKAGANEGATGENA 57 (131)
T ss_pred CCCChhHHHHHHHHHHhCCCCcEEEEEeh--------------hHHHHHHHHHcCCCCcccccch
Confidence 55668999999999999998 66666554 5555555555555543333333
No 41
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=56.18 E-value=31 Score=30.93 Aligned_cols=85 Identities=16% Similarity=0.176 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhCCcceeEEEEecCCCCCCccchhhhHHHhHHh
Q 037616 114 IVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 193 (383)
Q Consensus 114 ~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp~~~i~~~~v~P~~~~~~~~v~~yNa~lsl~~ 193 (383)
+...+.+.|++.+|+ .+. -++.+.+-|+. -.++.++-.|+++||...+ .+++|+...+.. -+-..-.-+..
T Consensus 27 ik~~L~~~i~~lie~--G~~--~fi~GgalG~D-~waae~vl~LK~~yp~ikL--~~v~Pf~~q~~~--W~~~~q~~y~~ 97 (177)
T PF06908_consen 27 IKKALKKQIIELIEE--GVR--WFITGGALGVD-LWAAEVVLELKKEYPEIKL--ALVLPFENQGNN--WNEANQERYQS 97 (177)
T ss_dssp HHHHHHHHHHHHHTT--T----EEEE---TTHH-HHHHHHHHTTTTT-TT-EE--EEEESSB-TTTT--S-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CCC--EEEECCcccHH-HHHHHHHHHHHhhhhheEE--EEEEcccchhhc--CCHHHHHHHHH
Confidence 445566667777775 333 23334443443 2466666778999997443 678898753332 11133345667
Q ss_pred hhhccccceecChH
Q 037616 194 LLEHTDVAVLLDNE 207 (383)
Q Consensus 194 l~~~~d~vi~~dN~ 207 (383)
|.+.||-++.+..+
T Consensus 98 il~~aD~v~~vs~~ 111 (177)
T PF06908_consen 98 ILEQADFVVVVSER 111 (177)
T ss_dssp HHHH-SEEEESSSS
T ss_pred HHHhCCEEEEccCC
Confidence 77788888877554
No 42
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=53.30 E-value=20 Score=29.67 Aligned_cols=31 Identities=23% Similarity=0.375 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhhcCCccceeEEeecCCCc
Q 037616 115 VDLCLDRIRKLADNCTGLQGFLVFNAVGGGT 145 (383)
Q Consensus 115 ~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGT 145 (383)
.+++.+++++.+++.+.-+|++++.++-|||
T Consensus 40 ~~~~~~~i~~~i~~~~~~~~viil~Dl~GGS 70 (122)
T cd00006 40 PDDLLEKIKAALAELDSGEGVLILTDLFGGS 70 (122)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEeCCCCC
Confidence 4566677777777777778999999999887
No 43
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=51.94 E-value=23 Score=29.26 Aligned_cols=32 Identities=9% Similarity=0.134 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhhcCCccceeEEeecCCCcc
Q 037616 115 VDLCLDRIRKLADNCTGLQGFLVFNAVGGGTG 146 (383)
Q Consensus 115 ~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTG 146 (383)
.+++.+++++.+++.+.=+|++++.++-|||=
T Consensus 41 ~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp 72 (116)
T TIGR00824 41 AETLQEKYNAALADLDTEEEVLFLVDIFGGSP 72 (116)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 45677888888887776689999999999983
No 44
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=47.76 E-value=74 Score=24.17 Aligned_cols=53 Identities=19% Similarity=0.384 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhhc--CCccceeEEeecC----CCccCCchHHHHHHhhhhhCCcceeEEEE
Q 037616 116 DLCLDRIRKLADNC--TGLQGFLVFNAVG----GGTGSGLGSLLLERLSVDYGKKSKLGFTV 171 (383)
Q Consensus 116 ~~~~d~ir~~~E~c--D~lqgf~i~~sl~----GGTGSG~~s~lle~l~~~yp~~~i~~~~v 171 (383)
+++.+.++..+++| ...+.+.|+|+.| +|. +-..+.+.|++.+....+..+.-
T Consensus 9 ~eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~---Lk~~V~~~L~~~~~~~~v~~~~~ 67 (83)
T PF01713_consen 9 EEALRALEEFLDEARQRGIRELRIITGKGNHSKGGV---LKRAVRRWLEEGYQYEEVLAYRD 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSH---HHHHHHHHHHHTHCCTTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCc---HHHHHHHHHHhhhccchhheeee
Confidence 34555666666555 3567889999999 554 77777888877665555555543
No 45
>PTZ00010 tubulin beta chain; Provisional
Probab=43.33 E-value=11 Score=38.89 Aligned_cols=69 Identities=16% Similarity=0.076 Sum_probs=42.2
Q ss_pred EEEEecCchhhHHHHHHHHHHHHhcCCC---CCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCC
Q 037616 4 CISVHIGQAGIQVGNACWELYCLEHGIQ---PDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEP 72 (383)
Q Consensus 4 ii~iqvGqcGnqIG~~~w~~~~~eh~~~---~~g~~~~~~~~~~~~~~~~~~F~e~~~~~~~pRailiD~e~ 72 (383)
|++-..|++|..+|+.+|+.+.+|++-. .-+.++.....+...+..++++....-..+..+.+++|-|.
T Consensus 135 i~~Sl~GGTGSGlgs~l~e~L~dey~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~a 206 (445)
T PTZ00010 135 ITHSLGGGTGSGMGTLLISKLREEYPDRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEA 206 (445)
T ss_pred EEeccCCCccccHHHHHHHHHHhhCCccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHH
Confidence 5666789999999999999999998621 11223221100112233455555544456677888888643
No 46
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=42.74 E-value=56 Score=32.32 Aligned_cols=73 Identities=16% Similarity=0.186 Sum_probs=48.1
Q ss_pred cchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhCCcceeEEEEecCCCC-CCccchhhhHH
Q 037616 110 IGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV-STSVVEPYNSV 188 (383)
Q Consensus 110 ~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp~~~i~~~~v~P~~~~-~~~~v~~yNa~ 188 (383)
...+.+.++.+.|++.. +..+||+|+|+.. | ---++.+++.+-+..+|-.+++=+-.|.... +|...--++++
T Consensus 63 mt~~~w~~la~~I~~~~---~~~dG~VVtHGTD--T-meeTA~~L~~~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av 136 (335)
T PRK09461 63 MTPEDWQHIADDIKANY---DDYDGFVILHGTD--T-MAYTASALSFMLENLGKPVIVTGSQIPLAELRSDGQTNLLNAL 136 (335)
T ss_pred CCHHHHHHHHHHHHHHh---ccCCeEEEeeccc--h-HHHHHHHHHHHHhCCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 45677788888888765 4688999999765 3 2467777777655556666666677777643 34444344444
No 47
>PRK13660 hypothetical protein; Provisional
Probab=40.68 E-value=1.1e+02 Score=27.54 Aligned_cols=108 Identities=10% Similarity=0.145 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhCCcceeEEEEecCCCCCCccchhhhHHHhHHh
Q 037616 114 IVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 193 (383)
Q Consensus 114 ~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp~~~i~~~~v~P~~~~~~~~v~~yNa~lsl~~ 193 (383)
+...+.+.|+..+|+ .+.=|++-..+ |+- =.++.++-.|+++||...+ ..++|+...++. -.-..-.-+..
T Consensus 27 IK~aL~~~l~~~~e~--G~~wfi~ggal--G~d-~wAaEvvl~LK~~yp~lkL--~~~~PF~~q~~~--W~e~~q~~y~~ 97 (182)
T PRK13660 27 IKKAIKRKLIALLEE--GLEWVIISGQL--GVE-LWAAEVVLELKEEYPDLKL--AVITPFEEHGEN--WNEANQEKLAN 97 (182)
T ss_pred HHHHHHHHHHHHHHC--CCCEEEECCcc--hHH-HHHHHHHHHHHhhCCCeEE--EEEeCccchhhc--CCHHHHHHHHH
Confidence 334555666666663 34433322222 221 1366677789999986544 457787643321 11122334456
Q ss_pred hhhccccceecChHHHHhhhhccCCCCCCChhhHHHHHHHHHhccc
Q 037616 194 LLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLT 239 (383)
Q Consensus 194 l~~~~d~vi~~dN~~L~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t 239 (383)
+.+.||-|+.+...- ... ..-|..-|+.+...-..+.
T Consensus 98 i~~~aD~v~~vs~~~--------y~~-p~q~~~rn~fmv~~sd~~i 134 (182)
T PRK13660 98 ILKQADFVKSISKRP--------YES-PAQFRQYNQFMLEHTDGAL 134 (182)
T ss_pred HHHhCCEEEEecCCC--------CCC-hHHHHHHHHHHHHccCeEE
Confidence 677888888773321 000 0136667776665544433
No 48
>PLN02408 phospholipase A1
Probab=39.38 E-value=57 Score=32.73 Aligned_cols=63 Identities=11% Similarity=0.247 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHhhhcCCc--cceeEEeecCCCccCCchHHHHHHhhhhhCCcceeEEEEecCCCCCC
Q 037616 113 EIVDLCLDRIRKLADNCTGL--QGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVST 179 (383)
Q Consensus 113 ~~~~~~~d~ir~~~E~cD~l--qgf~i~~sl~GGTGSG~~s~lle~l~~~yp~~~i~~~~v~P~~~~~~ 179 (383)
.+.+++.+.|++.+++...- .=.+.-|||||. ++.+.+-.|+..++..+.+.+..|-+|.+++
T Consensus 179 s~r~qVl~eI~~ll~~y~~~~~sI~vTGHSLGGA----LAtLaA~dl~~~~~~~~~V~v~tFGsPRVGN 243 (365)
T PLN02408 179 SLQEMVREEIARLLQSYGDEPLSLTITGHSLGAA----LATLTAYDIKTTFKRAPMVTVISFGGPRVGN 243 (365)
T ss_pred hHHHHHHHHHHHHHHhcCCCCceEEEeccchHHH----HHHHHHHHHHHhcCCCCceEEEEcCCCCccc
Confidence 46778888888888876432 224556999764 6677777788877766556666676776554
No 49
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=38.66 E-value=82 Score=30.76 Aligned_cols=91 Identities=19% Similarity=0.129 Sum_probs=50.5
Q ss_pred cchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhCCcceeEEEEecCCCC-CCccchhhhHH
Q 037616 110 IGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV-STSVVEPYNSV 188 (383)
Q Consensus 110 ~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp~~~i~~~~v~P~~~~-~~~~v~~yNa~ 188 (383)
...+.+.++.+.|++.+++ .+||+|+|+.. | --.++.+++.+-+..+|-.+++=+..|.... .|...--++++
T Consensus 54 ~t~~~~~~la~~i~~~~~~---~~GvVVtHGTD--T-me~tA~~Ls~~l~~l~kPVVlTGa~~P~~~~~sDg~~NL~~Av 127 (313)
T PF00710_consen 54 MTPEDWLELARAIQAALDD---YDGVVVTHGTD--T-MEETAFFLSLLLDNLDKPVVLTGAMRPLSAPGSDGPRNLYDAV 127 (313)
T ss_dssp --HHHHHHHHHHHHHHHTT---CSEEEEE--ST--T-HHHHHHHHHHHEES-SSEEEEE--SS-TTSTT-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHh---cCeEEEecCch--H-HHHHHHHHHHHhcCCCCCEEEeCCcCCCcCCCCccHHHHHHHH
Confidence 4567777888888888754 88999999765 3 2345666666655556666777778887642 34444444554
Q ss_pred HhHHhhhhccccceecChH
Q 037616 189 LSTHSLLEHTDVAVLLDNE 207 (383)
Q Consensus 189 lsl~~l~~~~d~vi~~dN~ 207 (383)
....+-. ..-..++|++.
T Consensus 128 ~~A~~~~-~~GV~v~f~~~ 145 (313)
T PF00710_consen 128 RVAASPA-GPGVLVVFNGR 145 (313)
T ss_dssp HHHHSGG-TSSEEEEETTE
T ss_pred HHHhccc-CCceEEEeCCC
Confidence 4333332 44555555555
No 50
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=37.27 E-value=38 Score=31.45 Aligned_cols=27 Identities=30% Similarity=0.582 Sum_probs=22.2
Q ss_pred EEeecCCCccCCchHHHHHHhhhhhCCc
Q 037616 137 VFNAVGGGTGSGLGSLLLERLSVDYGKK 164 (383)
Q Consensus 137 i~~sl~GGTGSG~~s~lle~l~~~yp~~ 164 (383)
++-+++||+|||= +-+++.|.+.++..
T Consensus 9 iiIgIaG~SgSGK-TTva~~l~~~~~~~ 35 (218)
T COG0572 9 IIIGIAGGSGSGK-TTVAKELSEQLGVE 35 (218)
T ss_pred EEEEEeCCCCCCH-HHHHHHHHHHhCcC
Confidence 5778999999998 55888888988754
No 51
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=36.99 E-value=32 Score=28.97 Aligned_cols=41 Identities=20% Similarity=0.363 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhhcCC-ccceeEEeecCCCccCCchH-HHHHHhhh
Q 037616 116 DLCLDRIRKLADNCTG-LQGFLVFNAVGGGTGSGLGS-LLLERLSV 159 (383)
Q Consensus 116 ~~~~d~ir~~~E~cD~-lqgf~i~~sl~GGTGSG~~s-~lle~l~~ 159 (383)
....++|++.+|+++. =+|++++.++ ||+ =+.. ..++.+.+
T Consensus 42 gt~~~~I~~ai~~~~~~~dgVlvl~DL-Ggs--~~n~e~a~~~l~~ 84 (125)
T TIGR02364 42 GTSPDKIIEAIEKADNEADGVLIFYDL-GSA--VMNAEMAVELLED 84 (125)
T ss_pred cchHHHHHHHHHHhcCCCCCEEEEEcC-CCc--HhHHHHHHHHhcc
Confidence 3456778888888865 7899999999 664 3322 34555543
No 52
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=35.79 E-value=16 Score=17.43 Aligned_cols=9 Identities=44% Similarity=1.372 Sum_probs=6.2
Q ss_pred cCCccCCcc
Q 037616 257 TNLVPYPRI 265 (383)
Q Consensus 257 ~nLvp~P~~ 265 (383)
..|+||||.
T Consensus 3 sGlI~fpR~ 11 (11)
T PF08259_consen 3 SGLIPFPRV 11 (11)
T ss_pred ccccccCCC
Confidence 357888873
No 53
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=35.36 E-value=87 Score=30.75 Aligned_cols=92 Identities=18% Similarity=0.229 Sum_probs=54.2
Q ss_pred cchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhCCcceeEEEEecCCCC-CCccchhhhHH
Q 037616 110 IGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV-STSVVEPYNSV 188 (383)
Q Consensus 110 ~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp~~~i~~~~v~P~~~~-~~~~v~~yNa~ 188 (383)
...+.+.++.+.|++..++ .+||+|+|+.. | --.++..+..+-+. +|-.+++=+-.|.... +|...--++++
T Consensus 60 ~t~~~w~~l~~~I~~~~~~---~dGiVVtHGTD--T-meeTA~~L~~~l~~-~kPVVlTGA~rp~~~~~sDg~~NL~~Al 132 (323)
T cd00411 60 MTDEDWLKIAKDINELYDS---YDGFVITHGTD--T-MEETAYFLSLTLEN-DKPVVLTGSMRPSTELSADGPLNLYNAV 132 (323)
T ss_pred CCHHHHHHHHHHHHHHHHh---cCcEEEEcCcc--c-HHHHHHHHHHHhcC-CCCEEEECCCCCCCCcCcchHHHHHHHH
Confidence 4567777888888877763 78999999765 3 24566666655555 6666666677776643 33333333333
Q ss_pred HhHHhhhh--ccccceecChHHH
Q 037616 189 LSTHSLLE--HTDVAVLLDNEAI 209 (383)
Q Consensus 189 lsl~~l~~--~~d~vi~~dN~~L 209 (383)
. .....+ .....|+|+++-+
T Consensus 133 ~-~A~~~~~~~~gV~V~f~~~i~ 154 (323)
T cd00411 133 Y-VAANYDSRGRGVLVVFNDRIF 154 (323)
T ss_pred H-HHcCcccCCCeEEEEECCEEe
Confidence 2 222222 3456666655533
No 54
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=30.98 E-value=70 Score=27.25 Aligned_cols=42 Identities=26% Similarity=0.335 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhh
Q 037616 112 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (383)
Q Consensus 112 ~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~ 160 (383)
.+-.+++.+.|++..++|| +++.+ ||+|-|---...+.+++-
T Consensus 50 ~Dd~~~i~~~l~~~~~~~D-----liItt--GG~g~g~~D~t~~ai~~~ 91 (144)
T TIGR00177 50 PDDPEEIREILRKAVDEAD-----VVLTT--GGTGVGPRDVTPEALEEL 91 (144)
T ss_pred CCCHHHHHHHHHHHHhCCC-----EEEEC--CCCCCCCCccHHHHHHHh
Confidence 4456778888888878788 44554 778777666666666543
No 55
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=29.47 E-value=93 Score=31.11 Aligned_cols=102 Identities=18% Similarity=0.263 Sum_probs=70.5
Q ss_pred cccccCcccccCCCccccccchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhCCcceeEEE
Q 037616 91 QLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFT 170 (383)
Q Consensus 91 ~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp~~~i~~~~ 170 (383)
|-++|+.|+..-|.-- ...-.+..+++.+.++.+.|.-..--|..+..-.|+|.+.|+|.-|+-.+.-++
T Consensus 196 nPL~G~~GAs~vFGPQ-KGat~~~v~~lD~~l~hfa~~~~~~~g~~v~~~pGaGAAGGmga~L~~~~~a~l--------- 265 (378)
T COG1929 196 NPLCGPQGASAVFGPQ-KGATPEMVEELDQALSHFAEVLEQATGKDVIDVPGAGAAGGMGAGLLAFLQAEL--------- 265 (378)
T ss_pred CCCcCCCCceeeecCc-cCCCHHHHHHHHHHHHHHHHHHHHHhcchhhcCCCCccchhHHHHHHHHhhCcc---------
Confidence 4455666665544311 112357778888889998887776667778888899999999999988776543
Q ss_pred EecCCCCCCccchhhhHHHhHHhhhhcccccee----cChHHHH
Q 037616 171 VYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVL----LDNEAIY 210 (383)
Q Consensus 171 v~P~~~~~~~~v~~yNa~lsl~~l~~~~d~vi~----~dN~~L~ 210 (383)
.| -.+..-.++.|....+-+|.||. +|++.++
T Consensus 266 -~~-------Gi~iV~~~~~le~~v~daDLVITGEGr~D~Qs~~ 301 (378)
T COG1929 266 -KS-------GIEIVLEATNLEDAVKDADLVITGEGRIDSQSLH 301 (378)
T ss_pred -cc-------cHHHHHHHhCHHHhhccCCEEEeCCCcccccccC
Confidence 11 12333456678888889999996 6777764
No 56
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=29.09 E-value=1.7e+02 Score=29.24 Aligned_cols=49 Identities=18% Similarity=0.413 Sum_probs=38.7
Q ss_pred cchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhCC
Q 037616 110 IGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGK 163 (383)
Q Consensus 110 ~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp~ 163 (383)
.++.+.|...++|+-..+.-+ .|+.|.+||--||+.--|+-.+.+++..
T Consensus 8 ~~~nV~eA~~eRl~~if~~f~-----~VcVSFSGGKDS~lmLhL~~~~ar~~~~ 56 (407)
T COG3969 8 LDENVLEAAIERLEWIFNTFP-----RVCVSFSGGKDSGLMLHLVAEVARENGR 56 (407)
T ss_pred CcchHHHHHHHHHHHHHhcCC-----eEEEEecCCCchhHHHHHHHHHHHHhCC
Confidence 356778889999999988777 5689999999999987776665555544
No 57
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=28.98 E-value=1.4e+02 Score=28.23 Aligned_cols=75 Identities=25% Similarity=0.365 Sum_probs=41.5
Q ss_pred HHHHHHhhhcCCccceeEEeecCCCccCC--chHHHHHH---hhhhhCCcceeEEEEecCCCCCCccchhhhHHHhHHhh
Q 037616 120 DRIRKLADNCTGLQGFLVFNAVGGGTGSG--LGSLLLER---LSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSL 194 (383)
Q Consensus 120 d~ir~~~E~cD~lqgf~i~~sl~GGTGSG--~~s~lle~---l~~~yp~~~i~~~~v~P~~~~~~~~v~~yNa~lsl~~l 194 (383)
++++..++. ..||+.+.|..|-||.- +...+.+. +|+..+......++| ++.-....+
T Consensus 154 eri~~i~~~---~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI--------------~~~e~~~~~ 216 (256)
T TIGR00262 154 ERLKQIAEK---SQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGI--------------SKPEQVKQA 216 (256)
T ss_pred HHHHHHHHh---CCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCC--------------CCHHHHHHH
Confidence 445555444 56788888888888863 54555544 444332211111112 333355677
Q ss_pred hhc-cccceecChHHHHhhh
Q 037616 195 LEH-TDVAVLLDNEAIYDIC 213 (383)
Q Consensus 195 ~~~-~d~vi~~dN~~L~~~~ 213 (383)
.+. +|++++= .++.+..
T Consensus 217 ~~~GADgvVvG--Saiv~~~ 234 (256)
T TIGR00262 217 IDAGADGVIVG--SAIVKII 234 (256)
T ss_pred HHcCCCEEEEC--HHHHHHH
Confidence 788 9987773 5555543
No 58
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=28.98 E-value=77 Score=26.53 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=28.0
Q ss_pred hhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhh
Q 037616 112 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSV 159 (383)
Q Consensus 112 ~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~ 159 (383)
++-.+++.+.|++.+++|| +++.+ ||||-|---...+.+++
T Consensus 42 ~Dd~~~i~~~i~~~~~~~D-----lvitt--GG~g~g~~D~t~~ai~~ 82 (133)
T cd00758 42 PDDADSIRAALIEASREAD-----LVLTT--GGTGVGRRDVTPEALAE 82 (133)
T ss_pred CCCHHHHHHHHHHHHhcCC-----EEEEC--CCCCCCCCcchHHHHHH
Confidence 5666778888888887776 33444 77887766666666554
No 59
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=28.79 E-value=1.4e+02 Score=30.48 Aligned_cols=61 Identities=16% Similarity=0.208 Sum_probs=45.0
Q ss_pred cccchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhCCcceeEEEEecCC
Q 037616 108 YTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSP 175 (383)
Q Consensus 108 ~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp~~~i~~~~v~P~~ 175 (383)
+..-++-.+++.+.|++.+++||-+ +. .||+.-|-.-.+-+.++++.++..+.-+.+-|..
T Consensus 222 ~giv~Dd~~~l~~~i~~a~~~~Dvi-----It--sGG~SvG~~D~v~~~l~~~lG~v~~~gia~kPGk 282 (404)
T COG0303 222 LGIVPDDPEALREAIEKALSEADVI-----IT--SGGVSVGDADYVKAALERELGEVLFHGVAMKPGK 282 (404)
T ss_pred ccccCCCHHHHHHHHHHhhhcCCEE-----EE--eCCccCcchHhHHHHHHhcCCcEEEEeeeecCCC
Confidence 4455677889999999999999933 33 3667667777777777766677777778887865
No 60
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=28.48 E-value=1e+02 Score=32.15 Aligned_cols=50 Identities=24% Similarity=0.307 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhCCcceeEEEEecCC
Q 037616 113 EIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSP 175 (383)
Q Consensus 113 ~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp~~~i~~~~v~P~~ 175 (383)
++++.+.+.|.-. ..=-++-+.-++|+|+|| +|++|++ +-++++++-|..
T Consensus 100 ~Yid~i~~~~~~~----~~~g~iR~~LDvGcG~aS-F~a~l~~--------r~V~t~s~a~~d 149 (506)
T PF03141_consen 100 HYIDQIAEMIPLI----KWGGGIRTALDVGCGVAS-FGAYLLE--------RNVTTMSFAPND 149 (506)
T ss_pred HHHHHHHHHhhcc----ccCCceEEEEeccceeeh-hHHHHhh--------CCceEEEccccc
Confidence 4555554444321 122356788899999985 8888874 356666666653
No 61
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=28.25 E-value=66 Score=26.89 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhh
Q 037616 112 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDY 161 (383)
Q Consensus 112 ~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~y 161 (383)
.+-.+++.+.|++.++++| +++.+ ||||-|---..-+.+++-.
T Consensus 41 ~Dd~~~I~~~l~~~~~~~d-----liitt--GG~g~g~~D~t~~~l~~~~ 83 (135)
T smart00852 41 PDDKEAIKEALREALERAD-----LVITT--GGTGPGPDDVTPEAVAEAL 83 (135)
T ss_pred CCCHHHHHHHHHHHHhCCC-----EEEEc--CCCCCCCCcCcHHHHHHHh
Confidence 4667778888888887776 33333 7787776666666666544
No 62
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=28.19 E-value=95 Score=27.44 Aligned_cols=43 Identities=21% Similarity=0.368 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhh
Q 037616 112 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDY 161 (383)
Q Consensus 112 ~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~y 161 (383)
.+-.+++.+.|++.++.|| +++.+ ||+|-|---...+.+++-+
T Consensus 42 ~Dd~~~I~~~l~~~~~~~d-----lVItt--GG~G~t~~D~t~ea~~~~~ 84 (170)
T cd00885 42 GDDEDRIAEALRRASERAD-----LVITT--GGLGPTHDDLTREAVAKAF 84 (170)
T ss_pred CCCHHHHHHHHHHHHhCCC-----EEEEC--CCCCCCCCChHHHHHHHHh
Confidence 4556678888888888777 44444 8888776666666665554
No 63
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=27.80 E-value=84 Score=30.07 Aligned_cols=64 Identities=19% Similarity=0.254 Sum_probs=29.7
Q ss_pred cCCCccccccchhhHHHHHHH-HHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhCCcceeEEEE
Q 037616 101 NNFARGHYTIGKEIVDLCLDR-IRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTV 171 (383)
Q Consensus 101 nn~a~G~~~~g~~~~~~~~d~-ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp~~~i~~~~v 171 (383)
-.|+.|||..+.+-+++.+.+ +...+|+++ ++.=.=+-.+|.|+| | ++..+.+.| +..+.++.+
T Consensus 29 m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~-l~~G~~vLDiGcGwG-~----~~~~~a~~~-g~~v~gitl 93 (273)
T PF02353_consen 29 MKYSCAYFDEGDDTLEEAQERKLDLLCEKLG-LKPGDRVLDIGCGWG-G----LAIYAAERY-GCHVTGITL 93 (273)
T ss_dssp ---S----SSTT--HHHHHHHHHHHHHTTTT---TT-EEEEES-TTS-H----HHHHHHHHH---EEEEEES
T ss_pred CCCCCeecCCchhhHHHHHHHHHHHHHHHhC-CCCCCEEEEeCCCcc-H----HHHHHHHHc-CcEEEEEEC
Confidence 456778887777756555544 677778775 444456678887776 3 334455566 344444443
No 64
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=27.77 E-value=34 Score=32.72 Aligned_cols=33 Identities=30% Similarity=0.490 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHh
Q 037616 117 LCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERL 157 (383)
Q Consensus 117 ~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l 157 (383)
++++++|+.+++-.-+ +|+|.|+|+.++.+|.=
T Consensus 2 eil~~l~~~i~~~~pI--------ig~gaGtGlsAk~ae~g 34 (268)
T PF09370_consen 2 EILDRLRAQIKAGKPI--------IGAGAGTGLSAKCAEKG 34 (268)
T ss_dssp HHHHHHHHHHHTT--E--------EEEEESSHHHHHHHHHT
T ss_pred hHHHHHHHHHhCCCce--------EEEeeccchhhHHHHhc
Confidence 6788899988876554 56778889988887654
No 65
>PF03283 PAE: Pectinacetylesterase
Probab=26.80 E-value=1.8e+02 Score=29.04 Aligned_cols=50 Identities=22% Similarity=0.303 Sum_probs=34.2
Q ss_pred ccccchhhHHHHHHHHHHH-hhhcCCccceeEEeecCCCccCCchHHH-HHHhhhhhCC
Q 037616 107 HYTIGKEIVDLCLDRIRKL-ADNCTGLQGFLVFNAVGGGTGSGLGSLL-LERLSVDYGK 163 (383)
Q Consensus 107 ~~~~g~~~~~~~~d~ir~~-~E~cD~lqgf~i~~sl~GGTGSG~~s~l-le~l~~~yp~ 163 (383)
.|-.|..+.+.++|.|... +.+.+. +++.-+-+||. |+.+ ++.+++.+|.
T Consensus 132 l~frG~~i~~avl~~l~~~gl~~a~~---vlltG~SAGG~----g~~~~~d~~~~~lp~ 183 (361)
T PF03283_consen 132 LYFRGYRILRAVLDDLLSNGLPNAKQ---VLLTGCSAGGL----GAILHADYVRDRLPS 183 (361)
T ss_pred eEeecHHHHHHHHHHHHHhcCcccce---EEEeccChHHH----HHHHHHHHHHHHhcc
Confidence 3556888888888887776 555443 36665555554 4555 7889999995
No 66
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=26.37 E-value=1.6e+02 Score=28.14 Aligned_cols=74 Identities=24% Similarity=0.317 Sum_probs=42.6
Q ss_pred HHHHHHhhhcCCccceeEEeecCCCccCC--ch---HHHHHHhhhhhCCcc-eeEEEEecCCCCCCccchhhhHHHhHHh
Q 037616 120 DRIRKLADNCTGLQGFLVFNAVGGGTGSG--LG---SLLLERLSVDYGKKS-KLGFTVYPSPQVSTSVVEPYNSVLSTHS 193 (383)
Q Consensus 120 d~ir~~~E~cD~lqgf~i~~sl~GGTGSG--~~---s~lle~l~~~yp~~~-i~~~~v~P~~~~~~~~v~~yNa~lsl~~ 193 (383)
++|++.++. .+||+.+.|.-|=||.- +. ..+++++|... +.+ .+.|+| ++.-....
T Consensus 158 eri~~i~~~---a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t-~~Pi~vGFGI--------------~~~e~~~~ 219 (263)
T CHL00200 158 SRIQKIARA---APGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMT-NKPIILGFGI--------------STSEQIKQ 219 (263)
T ss_pred HHHHHHHHh---CCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhc-CCCEEEECCc--------------CCHHHHHH
Confidence 556666555 45889998888888763 22 22344455532 222 223333 23335567
Q ss_pred hhhc-cccceecChHHHHhhh
Q 037616 194 LLEH-TDVAVLLDNEAIYDIC 213 (383)
Q Consensus 194 l~~~-~d~vi~~dN~~L~~~~ 213 (383)
+.+. +|.+|+ =.++.++.
T Consensus 220 ~~~~GADGvVV--GSalv~~i 238 (263)
T CHL00200 220 IKGWNINGIVI--GSACVQIL 238 (263)
T ss_pred HHhcCCCEEEE--CHHHHHHH
Confidence 8888 999877 35555443
No 67
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=26.36 E-value=1.6e+02 Score=29.99 Aligned_cols=91 Identities=16% Similarity=0.100 Sum_probs=56.0
Q ss_pred cchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhCCcceeEEEEecCCCC-CCccchhhhHH
Q 037616 110 IGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV-STSVVEPYNSV 188 (383)
Q Consensus 110 ~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp~~~i~~~~v~P~~~~-~~~~v~~yNa~ 188 (383)
...+.+.++.+.|++.++ +..+||+|+|+.. | --.++..+..+-+..||-.+++=+-.|.... +|...--++|+
T Consensus 120 mtp~~w~~La~~I~~~~~--~~~dGvVVtHGTD--T-M~yTA~aLs~~l~~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av 194 (404)
T TIGR02153 120 MKPEYWIKIAEAVAKALK--EGADGVVVAHGTD--T-MAYTAAALSFMFETLPVPVVLVGAQRSSDRPSSDAALNLICAV 194 (404)
T ss_pred CCHHHHHHHHHHHHHHhh--cCCCcEEEecCCh--h-HHHHHHHHHHHhhCCCCCEEEECCCCCCCCCCchHHHHHHHHH
Confidence 446777788888888776 3568999999765 3 2456666666545445655666667776542 34444444444
Q ss_pred HhHHhhhhccccceecChH
Q 037616 189 LSTHSLLEHTDVAVLLDNE 207 (383)
Q Consensus 189 lsl~~l~~~~d~vi~~dN~ 207 (383)
..-.. ..+...++|+++
T Consensus 195 ~~A~~--~~~gV~V~f~g~ 211 (404)
T TIGR02153 195 RAATS--PIAEVTVVMHGE 211 (404)
T ss_pred HHHhC--CCCcEEEEECCc
Confidence 33222 345566777665
No 68
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=26.16 E-value=1.6e+02 Score=28.90 Aligned_cols=75 Identities=16% Similarity=0.111 Sum_probs=45.5
Q ss_pred cchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhCCcceeEEEEecCCCC-CCccchhhhHH
Q 037616 110 IGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV-STSVVEPYNSV 188 (383)
Q Consensus 110 ~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp~~~i~~~~v~P~~~~-~~~~v~~yNa~ 188 (383)
...+.+.++.+.|++.+.. +..+||+|+|+.. | --.++..++.+-+..+|-.+++=+-.|.... +|...--++++
T Consensus 57 ~t~~~w~~la~~i~~~~~~-~~~dG~VVtHGTD--T-meeTA~~Ls~~l~~l~kPVVlTGa~rp~~~~~sDg~~NL~~Av 132 (323)
T smart00870 57 MTPADWLKLAKRINEALAD-DGYDGVVVTHGTD--T-LEETAYFLSLTLDSLDKPVVLTGAMRPATALSSDGPANLLDAV 132 (323)
T ss_pred CCHHHHHHHHHHHHHHhcc-CCCCEEEEecCCc--c-HHHHHHHHHHHhhcCCCCEEEECCCCCCCCCCchhHHHHHHHH
Confidence 3456666777777665443 5788999999765 3 2456666666555556656666667776542 34433334444
No 69
>PTZ00489 glutamate 5-kinase; Provisional
Probab=26.02 E-value=2.2e+02 Score=27.12 Aligned_cols=48 Identities=15% Similarity=0.065 Sum_probs=27.8
Q ss_pred hhhhhCCcceeEEEEecCCCCCCccchhhhHHHhHHhhhhccccceecCh
Q 037616 157 LSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDN 206 (383)
Q Consensus 157 l~~~yp~~~i~~~~v~P~~~~~~~~v~~yNa~lsl~~l~~~~d~vi~~dN 206 (383)
..+.|-+..+.+..++++......-.+..|+.-++..|.+. .+||+-|
T Consensus 87 y~~~f~~~~~~~aqiLlt~~d~~~~~~~~n~~~~l~~lL~~--g~VPIin 134 (264)
T PTZ00489 87 YYTELQKHGILCAQMLLAAYDLDSRKRTINAHNTIEVLISH--KVIPIIN 134 (264)
T ss_pred HHHHHHhCCCeEEEeeeeccccccchhhHHHHHHHHHHHHC--CCEEEEC
Confidence 44455555566666666543222333445888888888887 4555533
No 70
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=25.79 E-value=98 Score=28.12 Aligned_cols=45 Identities=27% Similarity=0.355 Sum_probs=31.0
Q ss_pred cchhhHHHHHHHHHHHhh--hcCCccceeEEeecCCCccCCchHHHHHHhhhhh
Q 037616 110 IGKEIVDLCLDRIRKLAD--NCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDY 161 (383)
Q Consensus 110 ~g~~~~~~~~d~ir~~~E--~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~y 161 (383)
.-++-.+++.+.|++.++ +|| +++.+ ||||-|---...|.+++-.
T Consensus 46 iVpDd~~~I~~aL~~a~~~~~~D-----lIITT--GGtg~g~rDvTpeAv~~l~ 92 (193)
T PRK09417 46 LIPDEQDLIEQTLIELVDEMGCD-----LVLTT--GGTGPARRDVTPEATLAVA 92 (193)
T ss_pred ECCCCHHHHHHHHHHHhhcCCCC-----EEEEC--CCCCCCCCCcHHHHHHHHh
Confidence 345666778888888875 566 44544 8898887666777766654
No 71
>PLN02802 triacylglycerol lipase
Probab=25.55 E-value=1.2e+02 Score=31.78 Aligned_cols=63 Identities=16% Similarity=0.314 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHhhhcCC--ccceeEEeecCCCccCCchHHHHHHhhhhhCCcceeEEEEecCCCCCC
Q 037616 113 EIVDLCLDRIRKLADNCTG--LQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVST 179 (383)
Q Consensus 113 ~~~~~~~d~ir~~~E~cD~--lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp~~~i~~~~v~P~~~~~~ 179 (383)
.+.+++++.|++.+++... ++=++.-|||||. ++.+.+..|+...+....+.+..|-++.+++
T Consensus 309 S~reqVl~eV~~Ll~~Y~~e~~sI~VTGHSLGGA----LAtLaA~dL~~~~~~~~pV~vyTFGsPRVGN 373 (509)
T PLN02802 309 SLSESVVGEVRRLMEKYKGEELSITVTGHSLGAA----LALLVADELATCVPAAPPVAVFSFGGPRVGN 373 (509)
T ss_pred hHHHHHHHHHHHHHHhCCCCcceEEEeccchHHH----HHHHHHHHHHHhCCCCCceEEEEcCCCCccc
Confidence 4567888889998887532 3335666999864 5666666677766654334555666666554
No 72
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=25.52 E-value=43 Score=26.58 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=21.4
Q ss_pred cceeEEeecCCCccCCchHHHHHHhhh
Q 037616 133 QGFLVFNAVGGGTGSGLGSLLLERLSV 159 (383)
Q Consensus 133 qgf~i~~sl~GGTGSG~~s~lle~l~~ 159 (383)
.+|-|+.+...|+|+...+.|++.|.-
T Consensus 20 ~~~kivvD~~~G~~~~~~~~ll~~lg~ 46 (104)
T PF02879_consen 20 SGLKIVVDCMNGAGSDILPRLLERLGC 46 (104)
T ss_dssp TTCEEEEE-TTSTTHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 367899999999998888888888755
No 73
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=25.48 E-value=1.4e+02 Score=29.40 Aligned_cols=73 Identities=15% Similarity=0.099 Sum_probs=47.7
Q ss_pred cchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhCCcceeEEEEecCCCC-CCccchhhhHH
Q 037616 110 IGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV-STSVVEPYNSV 188 (383)
Q Consensus 110 ~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp~~~i~~~~v~P~~~~-~~~~v~~yNa~ 188 (383)
...+.+.++.+.|++..++ .+||+|+|+.. | --.++..++.+-+. +|-.+++=+-.|.... +|...--++|+
T Consensus 59 ~tp~~w~~la~~I~~~~~~---~dG~VVtHGTD--T-me~TA~~Ls~~l~~-~kPVVlTGsmrp~~~~~sDg~~NL~~Al 131 (336)
T TIGR00519 59 MKPEYWVEIAEAVKKEYDD---YDGFVITHGTD--T-MAYTAAALSFMLET-PKPVVFTGAQRSSDRPSSDAALNLLCAV 131 (336)
T ss_pred CCHHHHHHHHHHHHHHHhc---CCeEEEccCCc--h-HHHHHHHHHHHcCC-CCCEEEECCCCCCCCcCcchHHHHHHHH
Confidence 4567778888888877763 88999999765 3 24566777665454 6666677677776542 34444444444
Q ss_pred H
Q 037616 189 L 189 (383)
Q Consensus 189 l 189 (383)
.
T Consensus 132 ~ 132 (336)
T TIGR00519 132 R 132 (336)
T ss_pred H
Confidence 3
No 74
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=24.50 E-value=2e+02 Score=27.63 Aligned_cols=79 Identities=23% Similarity=0.338 Sum_probs=51.1
Q ss_pred HHHHHHhhhcCCccceeEEeecCCCccCCch-----HHHHHHhhhhhCCcceeEEEEecCCCCCCccchhhhHHHhHHhh
Q 037616 120 DRIRKLADNCTGLQGFLVFNAVGGGTGSGLG-----SLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSL 194 (383)
Q Consensus 120 d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~-----s~lle~l~~~yp~~~i~~~~v~P~~~~~~~~v~~yNa~lsl~~l 194 (383)
+++++.++. -+||+.+-|..|=||.=.. ..+++++|.--..-....|+|-- .-...++
T Consensus 161 ~rl~~i~~~---a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~--------------~e~~~~v 223 (265)
T COG0159 161 ERLKKIAEA---ASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISS--------------PEQAAQV 223 (265)
T ss_pred HHHHHHHHh---CCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCC--------------HHHHHHH
Confidence 555666555 4588999999999998554 45566777654222334455521 1245677
Q ss_pred hhccccceecChHHHHhhhhccC
Q 037616 195 LEHTDVAVLLDNEAIYDICRRSL 217 (383)
Q Consensus 195 ~~~~d~vi~~dN~~L~~~~~~~l 217 (383)
.+.+|+||+ -.++.++..+..
T Consensus 224 ~~~ADGVIV--GSAiV~~i~~~~ 244 (265)
T COG0159 224 AEAADGVIV--GSAIVKIIEEGL 244 (265)
T ss_pred HHhCCeEEE--cHHHHHHHHhcc
Confidence 888999988 567777765543
No 75
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=24.37 E-value=57 Score=32.45 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhCCc
Q 037616 117 LCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKK 164 (383)
Q Consensus 117 ~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp~~ 164 (383)
+.-+.+|+.++.-- -| =++||||||=++.|-..+..--+.-
T Consensus 161 ~~a~~L~~av~~r~---NI----LisGGTGSGKTTlLNal~~~i~~~e 201 (355)
T COG4962 161 RAAKFLRRAVGIRC---NI----LISGGTGSGKTTLLNALSGFIDSDE 201 (355)
T ss_pred HHHHHHHHHHhhce---eE----EEeCCCCCCHHHHHHHHHhcCCCcc
Confidence 45556666665421 11 2579999999987766655443333
No 76
>PRK09932 glycerate kinase II; Provisional
Probab=23.96 E-value=1.2e+02 Score=30.63 Aligned_cols=104 Identities=17% Similarity=0.233 Sum_probs=61.8
Q ss_pred CcccccccCcccccCCCccccccchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhCCccee
Q 037616 88 HPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKL 167 (383)
Q Consensus 88 ~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp~~~i~ 167 (383)
+=+|-++|+.|+..-|+.= ....++..+.+...+++.++-...-.+.-+....|.|...|+|.-++..+.-+.
T Consensus 193 DV~NPL~G~~GAa~vfgpQ-KGa~~~~v~~Ld~~l~~~a~~~~~~~~~~~~~~pGaGAAGGlg~al~a~l~a~l------ 265 (381)
T PRK09932 193 DVDNPLVGARGAAAVFGPQ-KGATPEMVEELEQGLQNYARVLQQQTEINVCQMAGGGAAGGMGIAAAVFLNADI------ 265 (381)
T ss_pred CCCCCCCCCcceeeEeCCC-CCCCHHHHHHHHHHHHHHHHHHHHHhCccccCCCCCCccchHHHHHHHHhCCEE------
Confidence 4456677887777766522 112234444444455555544432234455666788888888888876665442
Q ss_pred EEEEecCCCCCCccchhhhHHHhHHhhhhcccccee----cChHHH
Q 037616 168 GFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVL----LDNEAI 209 (383)
Q Consensus 168 ~~~v~P~~~~~~~~v~~yNa~lsl~~l~~~~d~vi~----~dN~~L 209 (383)
.| -.+..-..+.+.+..+-+|.||. +|.+.+
T Consensus 266 ----~~-------G~d~v~~~~~l~~~l~~ADlVITGEG~~D~Qt~ 300 (381)
T PRK09932 266 ----KP-------GIEIVLNAVNLEQAVQGAALVITGEGRIDSQTA 300 (381)
T ss_pred ----cc-------HHHHHHHhcChHHHhccCCEEEECCCccccccc
Confidence 11 12444556678888889998886 455554
No 77
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=22.71 E-value=1.1e+02 Score=30.17 Aligned_cols=33 Identities=12% Similarity=0.189 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHhhhcCCccceeEEeecCCCcc
Q 037616 114 IVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTG 146 (383)
Q Consensus 114 ~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTG 146 (383)
-.+++.+++++.+++.+.-+|++++.++-|||=
T Consensus 41 ~~~~~~~~l~~~i~~~~~~d~vlILtDl~GGSP 73 (322)
T PRK15088 41 NAETLIEKYNAQLAKLDTSKGVLFLVDTWGGSP 73 (322)
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 346677777788888776789999999999984
No 78
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=22.61 E-value=1.5e+02 Score=29.88 Aligned_cols=105 Identities=19% Similarity=0.272 Sum_probs=61.7
Q ss_pred CCcccccccCcccccCCCccccccchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhCCcce
Q 037616 87 FHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSK 166 (383)
Q Consensus 87 ~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp~~~i 166 (383)
-+-+|-++|+.|+..-|+.= ....++..+.+...+++.++-...-.|.-+....|.|.+.|+|.-++..+.-+.
T Consensus 191 ~DV~NPL~G~~GAa~vfgpQ-KGa~~~~v~~ld~~l~~~a~~~~~~~~~d~~~~pGaGAAGGlg~al~a~lga~l----- 264 (375)
T TIGR00045 191 CDVTNPLCGENGAARVFGPQ-KGADPAMVEELDQALQHYARVIKRATGKDVRTIPGAGAAGGMGAGLLAFLGARL----- 264 (375)
T ss_pred ECCCCCCCCCCcceeeeCCC-CCCCHHHHHHHHHHHHHHHHHHHHHhCcccccCCCCCccccHHHHHHHHhCCEE-----
Confidence 35567778888887776522 112234445555555555554432234556666787887788887776554442
Q ss_pred eEEEEecCCCCCCccchhhhHHHhHHhhhhcccccee----cChHHH
Q 037616 167 LGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVL----LDNEAI 209 (383)
Q Consensus 167 ~~~~v~P~~~~~~~~v~~yNa~lsl~~l~~~~d~vi~----~dN~~L 209 (383)
.|. .+..=..+.+.+..+.+|.||. +|.+.+
T Consensus 265 -----~~G-------~d~v~~~~~l~~~l~~ADlVITGEG~~D~Qtl 299 (375)
T TIGR00045 265 -----KPG-------IDLVLELLDLEQKIKDADLVITGEGRLDRQSL 299 (375)
T ss_pred -----ccH-------HHHHHHhhCHHHHhcCCCEEEECCCccccccc
Confidence 121 2233345678888899998886 455544
No 79
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=22.19 E-value=86 Score=30.28 Aligned_cols=49 Identities=24% Similarity=0.238 Sum_probs=34.2
Q ss_pred CcccccC--CCccccccchhhHHHHHHHHHHHhhhcCCccceeEEeecCCC
Q 037616 96 KEDAANN--FARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGG 144 (383)
Q Consensus 96 ~~g~gnn--~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GG 144 (383)
..|.|.. ..+|+...=.++.+++...+....+..-.+.=|++-||+||.
T Consensus 69 ~RGhG~S~r~~rg~~~~f~~~~~dl~~~~~~~~~~~~~~p~~l~gHSmGg~ 119 (298)
T COG2267 69 LRGHGRSPRGQRGHVDSFADYVDDLDAFVETIAEPDPGLPVFLLGHSMGGL 119 (298)
T ss_pred CCCCCCCCCCCcCCchhHHHHHHHHHHHHHHHhccCCCCCeEEEEeCcHHH
Confidence 3466655 688876655566667777677666655567778999999865
No 80
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=21.56 E-value=52 Score=32.60 Aligned_cols=42 Identities=31% Similarity=0.358 Sum_probs=24.4
Q ss_pred CCCccccccchhhHHHHHHHHHHHhhhcCCccceeEEeecC-CCccCCchHHHHH
Q 037616 102 NFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVG-GGTGSGLGSLLLE 155 (383)
Q Consensus 102 n~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~-GGTGSG~~s~lle 155 (383)
|...=|.+.|.|++.+. ..+-| +++|+.| |||=||.|-+|-|
T Consensus 193 Np~~hy~ttg~EI~~q~-------~g~vD-----i~V~gaGTGGTitgvGRylke 235 (362)
T KOG1252|consen 193 NPLAHYETTGPEIWRQL-------DGKVD-----IFVAGAGTGGTITGVGRYLKE 235 (362)
T ss_pred CcccccccccHHHHHHh-------cCCCC-----EEEeccCCCceeechhHHHHH
Confidence 33333445676665544 22223 5677777 7888887766544
No 81
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=21.45 E-value=1.6e+02 Score=29.38 Aligned_cols=41 Identities=37% Similarity=0.583 Sum_probs=28.3
Q ss_pred HHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhCCcceeEE
Q 037616 124 KLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGF 169 (383)
Q Consensus 124 ~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp~~~i~~~ 169 (383)
|.++.+..++|+-...++|||+|. .+=..++ .||+...+.+
T Consensus 167 ~il~~~~Gf~~v~~avDvGgGiG~----v~k~ll~-~fp~ik~inf 207 (342)
T KOG3178|consen 167 KILEVYTGFKGVNVAVDVGGGIGR----VLKNLLS-KYPHIKGINF 207 (342)
T ss_pred hhhhhhcccccCceEEEcCCcHhH----HHHHHHH-hCCCCceeec
Confidence 346677778889999999988863 3333345 8988655443
No 82
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=21.34 E-value=1.5e+02 Score=30.16 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=37.1
Q ss_pred chhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhCCcceeEEEEecCC
Q 037616 111 GKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSP 175 (383)
Q Consensus 111 g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp~~~i~~~~v~P~~ 175 (383)
-++-.+++.+.|++..++|| +++.+ ||++.|-.-.+-+.+++. ++.....+.+-|..
T Consensus 226 v~Dd~~~i~~~l~~a~~~~D-----lvItt--GG~S~G~~D~~~~al~~l-G~~~f~~v~~kPGk 282 (411)
T PRK10680 226 IRDDPHALRAAFIEADSQAD-----VVISS--GGVSVGEADYTKTILEEL-GEIAFWKLAIKPGK 282 (411)
T ss_pred eCCCHHHHHHHHHHhccCCC-----EEEEc--CCCCCCCcchHHHHHHhc-CcEEEEEEEEecCc
Confidence 35666777788877767777 34444 788888777777777654 34444556666654
No 83
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=21.23 E-value=64 Score=19.47 Aligned_cols=13 Identities=38% Similarity=0.981 Sum_probs=9.2
Q ss_pred CCCccCCchHHHH
Q 037616 142 GGGTGSGLGSLLL 154 (383)
Q Consensus 142 ~GGTGSG~~s~ll 154 (383)
|||.|+|++-.+.
T Consensus 1 ~gg~g~gf~livV 13 (26)
T TIGR01732 1 GGGYGGGFALIVV 13 (26)
T ss_pred CCccCcchHHHHH
Confidence 5788888876553
No 84
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=20.87 E-value=47 Score=32.39 Aligned_cols=59 Identities=22% Similarity=0.160 Sum_probs=33.8
Q ss_pred cccCCCccccccchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhCCcceeEEEEecC
Q 037616 99 AANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPS 174 (383)
Q Consensus 99 ~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp~~~i~~~~v~P~ 174 (383)
.-.||.-=|++.|+|++++..+. ++. ++.++| || |.-+-+.+.||+.+|+..+ ++|-|.
T Consensus 147 NpaN~~aH~~tT~~EI~~~~~g~----------~d~--fVagvG--TG-GTitGvar~Lk~~~p~i~i--v~vdP~ 205 (300)
T COG0031 147 NPANPEAHYETTGPEIWQQTDGK----------VDA--FVAGVG--TG-GTITGVARYLKERNPNVRI--VAVDPE 205 (300)
T ss_pred CCccHHHHHhhhHHHHHHHhCCC----------CCE--EEEeCC--cc-hhHHHHHHHHHhhCCCcEE--EEECCC
Confidence 34566554556666654443222 333 345554 43 5566688999999998544 445454
No 85
>PRK01215 competence damage-inducible protein A; Provisional
Probab=20.87 E-value=1.7e+02 Score=27.92 Aligned_cols=44 Identities=18% Similarity=0.309 Sum_probs=31.3
Q ss_pred hhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhC
Q 037616 112 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 162 (383)
Q Consensus 112 ~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp 162 (383)
.+-.+.+.+.|++.++.|| +++.+ ||+|-|---...+.+++-+.
T Consensus 46 ~Dd~~~I~~~l~~a~~~~D-----lVItt--GG~g~t~dD~t~eaia~~~g 89 (264)
T PRK01215 46 MDDIEEIVSAFREAIDRAD-----VVVST--GGLGPTYDDKTNEGFAKALG 89 (264)
T ss_pred CCCHHHHHHHHHHHhcCCC-----EEEEe--CCCcCChhhhHHHHHHHHhC
Confidence 4566778888998888776 44544 88888776666677666553
No 86
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=20.64 E-value=1.4e+02 Score=29.14 Aligned_cols=45 Identities=29% Similarity=0.392 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHhhhcC------Ccc-ceeEEeecCCCccCCchHHHHHHhhhhhCC
Q 037616 113 EIVDLCLDRIRKLADNCT------GLQ-GFLVFNAVGGGTGSGLGSLLLERLSVDYGK 163 (383)
Q Consensus 113 ~~~~~~~d~ir~~~E~cD------~lq-gf~i~~sl~GGTGSG~~s~lle~l~~~yp~ 163 (383)
+..+++.+.|++.+++|+ .++ |++++ ||| -.-+.+.|+|+++++.
T Consensus 253 ~~l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLt---GG~---s~lpgl~e~l~~~~~~ 304 (335)
T PRK13929 253 ESLLHILEAIRATLEDCPPELSGDIVDRGVILT---GGG---ALLNGIKEWLSEEIVV 304 (335)
T ss_pred HHHHHHHHHHHHHHHhCCcccchhhcCCCEEEE---chh---hhhhhHHHHHHHHHCC
Confidence 344567788899999985 233 45554 333 2566778899998853
No 87
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=20.39 E-value=1.2e+02 Score=25.97 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHHHhh--hcCCccceeEEeecCCCccCCchHHHHHHhhh
Q 037616 112 KEIVDLCLDRIRKLAD--NCTGLQGFLVFNAVGGGTGSGLGSLLLERLSV 159 (383)
Q Consensus 112 ~~~~~~~~d~ir~~~E--~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~ 159 (383)
++-.+++.+.|++..+ +|| +++.+ ||+|-|---.+-+.+++
T Consensus 43 ~Dd~~~i~~~l~~~~~~~~~D-----lVitt--GG~s~g~~D~t~~al~~ 85 (152)
T cd00886 43 PDDKDEIREALIEWADEDGVD-----LILTT--GGTGLAPRDVTPEATRP 85 (152)
T ss_pred CCCHHHHHHHHHHHHhcCCCC-----EEEEC--CCcCCCCCcCcHHHHHH
Confidence 4556778888887777 677 44444 77877765554444443
No 88
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=20.33 E-value=2.4e+02 Score=28.94 Aligned_cols=90 Identities=14% Similarity=0.090 Sum_probs=55.4
Q ss_pred cchhhHHHHHHHHHHHhhhcCCccceeEEeecCCCccCCchHHHHHHhhhhhCCcceeEEEEecCCCC-CCccchhhhHH
Q 037616 110 IGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV-STSVVEPYNSV 188 (383)
Q Consensus 110 ~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGTGSG~~s~lle~l~~~yp~~~i~~~~v~P~~~~-~~~~v~~yNa~ 188 (383)
...+.+.++.+.|++.++. ..+||+|+|+.. | --.++..+..+- ..|+-.+++=+-.|.... +|...--++|+
T Consensus 133 mtp~~W~~La~~I~~~~~~--~~dGvVVtHGTD--T-M~yTA~aLs~~l-~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av 206 (419)
T PRK04183 133 MTPEYWVEIAEAVYEEIKN--GADGVVVAHGTD--T-MHYTAAALSFML-KTPVPIVFVGAQRSSDRPSSDAAMNLICAV 206 (419)
T ss_pred CCHHHHHHHHHHHHHHhhc--cCCeEEEecCCc--h-HHHHHHHHHHhc-CCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 4567788888888888764 589999999765 4 245666665544 445655666667776542 34444344444
Q ss_pred HhHHhhhhccccceecChH
Q 037616 189 LSTHSLLEHTDVAVLLDNE 207 (383)
Q Consensus 189 lsl~~l~~~~d~vi~~dN~ 207 (383)
..-. ...+...++|+++
T Consensus 207 ~~A~--~~~~gV~Vvf~g~ 223 (419)
T PRK04183 207 LAAT--SDIAEVVVVMHGT 223 (419)
T ss_pred HHHh--CCCCcEEEEECCc
Confidence 3322 2345566667654
Done!