BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037618
(374 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AUE|A Chain A, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUE|B Chain B, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUE|C Chain C, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUE|D Chain D, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
Length = 717
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 16/61 (26%)
Query: 256 PNYEIIHHTIWGYFSQRSGLLIQFEDSRLLTMKTKDGNDVFWETSTESVMHDYRYVDGIN 315
P H + W +FSQ+ TM T +FW S + YR++DG
Sbjct: 203 PQAATAHDSAWDFFSQQPS-----------TMHT-----LFWAMSGHGIPRSYRHMDGFG 246
Query: 316 I 316
+
Sbjct: 247 V 247
>pdb|4AUM|A Chain A, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUM|B Chain B, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUM|C Chain C, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUM|D Chain D, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
Length = 719
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 16/61 (26%)
Query: 256 PNYEIIHHTIWGYFSQRSGLLIQFEDSRLLTMKTKDGNDVFWETSTESVMHDYRYVDGIN 315
P H + W +FSQ+ TM T +FW S + YR++DG
Sbjct: 205 PQAATAHDSAWDFFSQQPS-----------TMHT-----LFWAMSGHGIPRSYRHMDGFG 248
Query: 316 I 316
+
Sbjct: 249 V 249
>pdb|4AUN|A Chain A, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|B Chain B, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|C Chain C, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|D Chain D, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|E Chain E, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|F Chain F, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|G Chain G, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|H Chain H, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
Length = 719
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 16/61 (26%)
Query: 256 PNYEIIHHTIWGYFSQRSGLLIQFEDSRLLTMKTKDGNDVFWETSTESVMHDYRYVDGIN 315
P H + W +FSQ+ TM T +FW S + YR++DG
Sbjct: 205 PQAATAHDSAWDFFSQQPS-----------TMHT-----LFWAMSGHGIPRSYRHMDGFG 248
Query: 316 I 316
+
Sbjct: 249 V 249
>pdb|4AUL|A Chain A, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUL|B Chain B, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUL|C Chain C, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUL|D Chain D, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
Length = 719
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 16/61 (26%)
Query: 256 PNYEIIHHTIWGYFSQRSGLLIQFEDSRLLTMKTKDGNDVFWETSTESVMHDYRYVDGIN 315
P H + W +FSQ+ TM T +FW S + YR++DG
Sbjct: 205 PQAATAHDSAWDFFSQQPS-----------TMHT-----LFWAMSGHGIPRSYRHMDGFG 248
Query: 316 I 316
+
Sbjct: 249 V 249
>pdb|3CXR|A Chain A, Crystal Structure Of Gluconate 5-Dehydrogase From
Streptococcus Suis Type 2
pdb|3O03|A Chain A, Quaternary Complex Structure Of Gluconate 5-Dehydrogenase
From Streptococcus Suis Type 2
Length = 291
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 70 YLVGSPLIPLQVQLGHSVHKPVKDCSIQASTAKYIVQQYIAATGGQAALNAVHSMCVTGQ 129
++V +IP ++ GH K + CS+ + + V Y AA GG L
Sbjct: 147 FIVSKAVIPSMIKKGHG--KIINICSMMSELGRETVSAYAAAKGGLKMLT---------- 194
Query: 130 MKITASEFHQGDIE 143
K ASE+ + +I+
Sbjct: 195 -KNIASEYGEANIQ 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,861,842
Number of Sequences: 62578
Number of extensions: 489294
Number of successful extensions: 956
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 956
Number of HSP's gapped (non-prelim): 5
length of query: 374
length of database: 14,973,337
effective HSP length: 100
effective length of query: 274
effective length of database: 8,715,537
effective search space: 2388057138
effective search space used: 2388057138
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)