BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037618
(374 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A3QBX2|SYI_SHELP Isoleucine--tRNA ligase OS=Shewanella loihica (strain ATCC BAA-1088
/ PV-4) GN=ileS PE=3 SV=1
Length = 940
Score = 37.0 bits (84), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 9/121 (7%)
Query: 22 IPEEMFTSMGSNVQLRWQNLSTWMKAQTSDKWSQPVIAGRINELRFLLYLVGSPLIPLQV 81
+PE F G+ Q + L +W T K Q + R F+L+ G P +
Sbjct: 10 LPETEFPMRGNLAQREPEMLKSW----TEKKLYQKIRESRTGAKPFILH-DGPPYANGSI 64
Query: 82 QLGHSVHKPVKDCSIQASTAKYIVQQYIAA---TGGQAALNAVHSMCVTGQMKITASEFH 138
+GHSV+K +KD I++ T YI G L + GQ K++A+EF
Sbjct: 65 HIGHSVNKILKDIIIKSKTLSGFDAPYIPGWDCHGLPIELKVEQKVGKPGQ-KVSAAEFR 123
Query: 139 Q 139
Q
Sbjct: 124 Q 124
>sp|B4F1W8|WECG_PROMH Probable UDP-N-acetyl-D-mannosaminuronic acid transferase
OS=Proteus mirabilis (strain HI4320) GN=wecG PE=3 SV=1
Length = 245
Score = 35.8 bits (81), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 19/86 (22%)
Query: 251 EAQSGPNYEIIHHTIWG---------YFSQ----RSGLLIQFEDSRLLTMKTKDGNDVFW 297
+ S P Y I H IWG Y Q +SG LI ++LT +T G +
Sbjct: 2 DTNSIPKYSIRGHNIWGFKDMAHFLDYLYQGAQIKSGSLIAINAEKILTAETDKGLNQLL 61
Query: 298 ETSTESVMHDYRYVDGINIAHGGRTR 323
+ + DY Y DGI++ G R +
Sbjct: 62 DEA------DYLYADGISVVRGIRRK 81
>sp|A1RMM6|SYI_SHESW Isoleucine--tRNA ligase OS=Shewanella sp. (strain W3-18-1) GN=ileS
PE=3 SV=1
Length = 940
Score = 35.8 bits (81), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 9/121 (7%)
Query: 22 IPEEMFTSMGSNVQLRWQNLSTWMKAQTSDKWSQPVIAGRINELRFLLYLVGSPLIPLQV 81
+PE F G+ + L W T D Q + RI F+L+ G P +
Sbjct: 10 LPETEFPMRGNLANREPEMLERW----TKDGLYQQIRDSRIGRTPFILH-DGPPYANGSI 64
Query: 82 QLGHSVHKPVKDCSIQASTAKYIVQQYIAA---TGGQAALNAVHSMCVTGQMKITASEFH 138
+GHSV+K +KD +++ T Y+ G L + GQ KITA+EF
Sbjct: 65 HIGHSVNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEQKVGKPGQ-KITAAEFR 123
Query: 139 Q 139
+
Sbjct: 124 E 124
>sp|A4Y4A4|SYI_SHEPC Isoleucine--tRNA ligase OS=Shewanella putrefaciens (strain CN-32 /
ATCC BAA-453) GN=ileS PE=3 SV=1
Length = 940
Score = 35.8 bits (81), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 9/121 (7%)
Query: 22 IPEEMFTSMGSNVQLRWQNLSTWMKAQTSDKWSQPVIAGRINELRFLLYLVGSPLIPLQV 81
+PE F G+ + L W T D Q + RI F+L+ G P +
Sbjct: 10 LPETEFPMRGNLANREPEMLERW----TKDGLYQQIRDSRIGRTPFILH-DGPPYANGSI 64
Query: 82 QLGHSVHKPVKDCSIQASTAKYIVQQYIAA---TGGQAALNAVHSMCVTGQMKITASEFH 138
+GHSV+K +KD +++ T Y+ G L + GQ KITA+EF
Sbjct: 65 HIGHSVNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEQKVGKPGQ-KITAAEFR 123
Query: 139 Q 139
+
Sbjct: 124 E 124
>sp|A1S425|SYI_SHEAM Isoleucine--tRNA ligase OS=Shewanella amazonensis (strain ATCC
BAA-1098 / SB2B) GN=ileS PE=3 SV=1
Length = 940
Score = 35.4 bits (80), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 9/121 (7%)
Query: 22 IPEEMFTSMGSNVQLRWQNLSTWMKAQTSDKWSQPVIAGRINELRFLLYLVGSPLIPLQV 81
+PE F G+ L W K DK Q + RI F+L+ G P +
Sbjct: 10 LPETEFPMRGNLANREPAMLERWNK----DKLYQQIRDSRIGRKPFILH-DGPPYANGSI 64
Query: 82 QLGHSVHKPVKDCSIQASTAKYIVQQYIAA---TGGQAALNAVHSMCVTGQMKITASEFH 138
+GHSV+K +KD I++ T Y+ G L + GQ KI+A+EF
Sbjct: 65 HIGHSVNKILKDIIIKSKTLAGFDAPYVPGWDCHGLPIELKVEQKVGKPGQ-KISAAEFR 123
Query: 139 Q 139
+
Sbjct: 124 E 124
>sp|B8EFC7|SYI_SHEB2 Isoleucine--tRNA ligase OS=Shewanella baltica (strain OS223)
GN=ileS PE=3 SV=1
Length = 940
Score = 35.0 bits (79), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 9/121 (7%)
Query: 22 IPEEMFTSMGSNVQLRWQNLSTWMKAQTSDKWSQPVIAGRINELRFLLYLVGSPLIPLQV 81
+PE F G+ + L W T D Q + RI F+L+ G P +
Sbjct: 10 LPETEFPMRGNLANREPEMLERW----TKDGLYQQIRDSRIGRTPFILH-DGPPYANGSI 64
Query: 82 QLGHSVHKPVKDCSIQASTAKYIVQQYIAA---TGGQAALNAVHSMCVTGQMKITASEFH 138
+GHSV+K +KD I++ T Y+ G L + GQ KI+A+EF
Sbjct: 65 HIGHSVNKILKDIIIKSKTMSGFDAPYVPGWDCHGLPIELKVEQKVGKPGQ-KISAAEFR 123
Query: 139 Q 139
+
Sbjct: 124 E 124
>sp|A9L4U7|SYI_SHEB9 Isoleucine--tRNA ligase OS=Shewanella baltica (strain OS195)
GN=ileS PE=3 SV=1
Length = 940
Score = 35.0 bits (79), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 9/121 (7%)
Query: 22 IPEEMFTSMGSNVQLRWQNLSTWMKAQTSDKWSQPVIAGRINELRFLLYLVGSPLIPLQV 81
+PE F G+ + L W T D Q + RI F+L+ G P +
Sbjct: 10 LPETEFPMRGNLANREPEMLERW----TKDGLYQQIRDSRIGRTPFILH-DGPPYANGSI 64
Query: 82 QLGHSVHKPVKDCSIQASTAKYIVQQYIAA---TGGQAALNAVHSMCVTGQMKITASEFH 138
+GHSV+K +KD I++ T Y+ G L + GQ KI+A+EF
Sbjct: 65 HIGHSVNKILKDIIIKSKTMSGFDAPYVPGWDCHGLPIELKVEQKVGKPGQ-KISAAEFR 123
Query: 139 Q 139
+
Sbjct: 124 E 124
>sp|A6WKD4|SYI_SHEB8 Isoleucine--tRNA ligase OS=Shewanella baltica (strain OS185)
GN=ileS PE=3 SV=1
Length = 940
Score = 35.0 bits (79), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 9/121 (7%)
Query: 22 IPEEMFTSMGSNVQLRWQNLSTWMKAQTSDKWSQPVIAGRINELRFLLYLVGSPLIPLQV 81
+PE F G+ + L W T D Q + RI F+L+ G P +
Sbjct: 10 LPETEFPMRGNLANREPEMLERW----TKDGLYQQIRDSRIGRTPFILH-DGPPYANGSI 64
Query: 82 QLGHSVHKPVKDCSIQASTAKYIVQQYIAA---TGGQAALNAVHSMCVTGQMKITASEFH 138
+GHSV+K +KD I++ T Y+ G L + GQ KI+A+EF
Sbjct: 65 HIGHSVNKILKDIIIKSKTMSGFDAPYVPGWDCHGLPIELKVEQKVGKPGQ-KISAAEFR 123
Query: 139 Q 139
+
Sbjct: 124 E 124
>sp|Q6FG02|SYI_ACIAD Isoleucine--tRNA ligase OS=Acinetobacter sp. (strain ADP1)
GN=ileS PE=3 SV=1
Length = 945
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 11 EDGLETVLEVPIPEEMFTSMGSNVQLRWQNLSTWMKAQTSDKWSQPVIAGRINELRFLLY 70
E+ ++ + +P F +M +N+ +R W++ +D Q + A RI + +++L+
Sbjct: 8 ENAVDYKATLNLPGTEF-AMKANLAVR---EVKWLEEWYADNIYQKIRASRIGKKKYVLH 63
Query: 71 LVGSPLIPLQVQLGHSVHKPVKDCSIQA 98
G P Q+ LGH+V+K +KD +++
Sbjct: 64 -DGPPYANGQIHLGHAVNKVLKDIIVKS 90
>sp|A0KZZ1|SYI_SHESA Isoleucine--tRNA ligase OS=Shewanella sp. (strain ANA-3) GN=ileS
PE=3 SV=1
Length = 940
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 9/121 (7%)
Query: 22 IPEEMFTSMGSNVQLRWQNLSTWMKAQTSDKWSQPVIAGRINELRFLLYLVGSPLIPLQV 81
+PE F G+ + L W T D Q + RI F+L+ G P +
Sbjct: 10 LPETEFPMRGNLANREPEMLERW----TKDGLYQQIRDSRIGRTPFILH-DGPPYANGSI 64
Query: 82 QLGHSVHKPVKDCSIQASTAKYIVQQYIAA---TGGQAALNAVHSMCVTGQMKITASEFH 138
+GHSV+K +KD +++ T Y+ G L + GQ KI+A+EF
Sbjct: 65 HIGHSVNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEQKVGKPGQ-KISAAEFR 123
Query: 139 Q 139
+
Sbjct: 124 E 124
>sp|Q0HS82|SYI_SHESR Isoleucine--tRNA ligase OS=Shewanella sp. (strain MR-7) GN=ileS
PE=3 SV=1
Length = 940
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 9/121 (7%)
Query: 22 IPEEMFTSMGSNVQLRWQNLSTWMKAQTSDKWSQPVIAGRINELRFLLYLVGSPLIPLQV 81
+PE F G+ + L W T D Q + RI F+L+ G P +
Sbjct: 10 LPETEFPMRGNLANREPEMLERW----TKDGLYQQIRDSRIGRTPFILH-DGPPYANGSI 64
Query: 82 QLGHSVHKPVKDCSIQASTAKYIVQQYIAA---TGGQAALNAVHSMCVTGQMKITASEFH 138
+GHSV+K +KD +++ T Y+ G L + GQ KI+A+EF
Sbjct: 65 HIGHSVNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEQKVGKPGQ-KISAAEFR 123
Query: 139 Q 139
+
Sbjct: 124 E 124
>sp|A3D1G5|SYI_SHEB5 Isoleucine--tRNA ligase OS=Shewanella baltica (strain OS155 / ATCC
BAA-1091) GN=ileS PE=3 SV=1
Length = 940
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 9/121 (7%)
Query: 22 IPEEMFTSMGSNVQLRWQNLSTWMKAQTSDKWSQPVIAGRINELRFLLYLVGSPLIPLQV 81
+PE F G+ + L W T D Q + RI F+L+ G P +
Sbjct: 10 LPETEFPMRGNLANREPEMLERW----TKDGLYQQIRDSRIGRTPFILH-DGPPYANGSI 64
Query: 82 QLGHSVHKPVKDCSIQASTAKYIVQQYIAA---TGGQAALNAVHSMCVTGQMKITASEFH 138
+GHSV+K +KD +++ T Y+ G L + GQ KI+A+EF
Sbjct: 65 HIGHSVNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEQKVGKPGQ-KISAAEFR 123
Query: 139 Q 139
+
Sbjct: 124 E 124
>sp|Q0HFY9|SYI_SHESM Isoleucine--tRNA ligase OS=Shewanella sp. (strain MR-4) GN=ileS
PE=3 SV=1
Length = 940
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 9/121 (7%)
Query: 22 IPEEMFTSMGSNVQLRWQNLSTWMKAQTSDKWSQPVIAGRINELRFLLYLVGSPLIPLQV 81
+PE F G+ + L W T D Q + RI F+L+ G P +
Sbjct: 10 LPETEFPMRGNLANREPEMLERW----TKDGLYQQIRDSRIGRTPFILH-DGPPYANGSI 64
Query: 82 QLGHSVHKPVKDCSIQASTAKYIVQQYIAA---TGGQAALNAVHSMCVTGQMKITASEFH 138
+GHSV+K +KD +++ T Y+ G L + GQ KI+A+EF
Sbjct: 65 HIGHSVNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEQKVGKPGQ-KISAAEFR 123
Query: 139 Q 139
+
Sbjct: 124 E 124
>sp|Q8EBI4|SYI_SHEON Isoleucine--tRNA ligase OS=Shewanella oneidensis (strain MR-1)
GN=ileS PE=3 SV=1
Length = 940
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 9/121 (7%)
Query: 22 IPEEMFTSMGSNVQLRWQNLSTWMKAQTSDKWSQPVIAGRINELRFLLYLVGSPLIPLQV 81
+PE F G+ + L W T D Q + RI F+L+ G P +
Sbjct: 10 LPETEFPMRGNLANREPEMLERW----TKDGLYQQIRDSRIGRTPFILH-DGPPYANGSI 64
Query: 82 QLGHSVHKPVKDCSIQASTAKYIVQQYIAA---TGGQAALNAVHSMCVTGQMKITASEFH 138
+GHSV+K +KD +++ T Y+ G L + GQ KI+A+EF
Sbjct: 65 HIGHSVNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEQKVGKPGQ-KISAAEFR 123
Query: 139 Q 139
+
Sbjct: 124 E 124
>sp|P37809|ATPB_BACSU ATP synthase subunit beta OS=Bacillus subtilis (strain 168) GN=atpD
PE=1 SV=1
Length = 473
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 288 KTKDGNDVFWETSTESVMHDYRYVDG-INIAHGGRTRVTVFRYGEQSANHKRDMEEKWKI 346
+T++GND+F+E S V++ V G +N G R RV + G A H RD++ + +
Sbjct: 191 RTREGNDLFYEMSDSGVINKTAMVFGQMNEPPGARMRVAL--TGLTMAEHFRDVQGQDVL 248
Query: 347 EDVDLNIWGLTK 358
+D NI+ T+
Sbjct: 249 FFID-NIFRFTQ 259
>sp|C5BQX2|SYI_TERTT Isoleucine--tRNA ligase OS=Teredinibacter turnerae (strain ATCC
39867 / T7901) GN=ileS PE=3 SV=1
Length = 934
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 22 IPEEMFTSMGSNVQLRWQNLSTWMKAQTSDKWSQPVIAGRINELRFLLYLVGSPLIPLQV 81
+P+ F + Q Q L W K + Q + R +F+L+ G P ++
Sbjct: 10 LPQTSFAMKANLAQREPQTLKRWQK----ENLYQQIRQARAGREKFILH-DGPPYANGEI 64
Query: 82 QLGHSVHKPVKDCSIQASTAKYIVQQYI 109
+GH+V+K +KD ++A T YI
Sbjct: 65 HIGHAVNKILKDIIVKAKTLSGFDAPYI 92
>sp|Q5QZS6|SYI_IDILO Isoleucine--tRNA ligase OS=Idiomarina loihiensis (strain ATCC
BAA-735 / DSM 15497 / L2-TR) GN=ileS PE=3 SV=1
Length = 944
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 22 IPEEMFTSMGSNVQLRWQNLSTWMKAQTSDKWSQPVIAGRINELRFLLYLVGSPLIPLQV 81
+PE F G+ Q + L W + +D + Q + + + +F+L+ G P Q+
Sbjct: 10 LPETAFPMRGNLAQREPKMLEQWYE---TDLYGQ-IRKAKAGKPKFILH-DGPPYANGQI 64
Query: 82 QLGHSVHKPVKDCSIQASTAKYIVQQYI 109
+GH+V+K +KD ++A T Y+
Sbjct: 65 HIGHAVNKILKDVIVKAKTLSDFDAPYV 92
>sp|B5XKQ1|ATPB_STRPZ ATP synthase subunit beta OS=Streptococcus pyogenes serotype M49
(strain NZ131) GN=atpD PE=3 SV=1
Length = 468
Score = 33.1 bits (74), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 288 KTKDGNDVFWETSTESVMHDYRYVDG-INIAHGGRTRVTVFRYGEQSANHKRDMEEKWKI 346
+T++GND++WE V+ V G +N G R RV + G A + RD+E + +
Sbjct: 188 RTREGNDLYWEMKESGVIEKTAMVFGQMNEPPGARMRVAL--TGLTIAEYFRDVESQDVL 245
Query: 347 EDVDLNIWGLTK 358
+D NI+ T+
Sbjct: 246 LFID-NIFRFTQ 256
>sp|A8H1H3|SYI_SHEPA Isoleucine--tRNA ligase OS=Shewanella pealeana (strain ATCC 700345
/ ANG-SQ1) GN=ileS PE=3 SV=1
Length = 940
Score = 32.7 bits (73), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 9/121 (7%)
Query: 22 IPEEMFTSMGSNVQLRWQNLSTWMKAQTSDKWSQPVIAGRINELRFLLYLVGSPLIPLQV 81
+PE F G+ + L +W T + Q + R + F+L+ G P +
Sbjct: 10 LPETEFPMRGNLANREPEMLKSW----TENGLYQQIRESRKDAKPFILH-DGPPYANGDI 64
Query: 82 QLGHSVHKPVKDCSIQASTAKYIVQQYIAA---TGGQAALNAVHSMCVTGQMKITASEFH 138
+GHSV+K +KD I++ T YI G L + G K+TA+EF
Sbjct: 65 HIGHSVNKILKDIIIKSKTMSGFDAPYIPGWDCHGLPIELKVEQKVGKPGH-KVTAAEFR 123
Query: 139 Q 139
Q
Sbjct: 124 Q 124
>sp|A8FSI2|SYI_SHESH Isoleucine--tRNA ligase OS=Shewanella sediminis (strain HAW-EB3)
GN=ileS PE=3 SV=1
Length = 940
Score = 32.0 bits (71), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 22 IPEEMFTSMGSNVQLRWQNLSTWMKAQTSDKWSQPVIAGRINELRFLLYLVGSPLIPLQV 81
+PE F G+ L +W T D Q + RI F+L+ G P +
Sbjct: 10 LPETEFPMRGNLANREPVMLKSW----TEDGLYQQIRDSRIGRKPFILH-DGPPYANGSI 64
Query: 82 QLGHSVHKPVKDCSIQASTAKYIVQQYI 109
+GHSV+K +KD +++ T YI
Sbjct: 65 HIGHSVNKILKDIIVKSKTLSGFDAPYI 92
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,097,197
Number of Sequences: 539616
Number of extensions: 6086920
Number of successful extensions: 12145
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 12143
Number of HSP's gapped (non-prelim): 25
length of query: 374
length of database: 191,569,459
effective HSP length: 119
effective length of query: 255
effective length of database: 127,355,155
effective search space: 32475564525
effective search space used: 32475564525
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)