Query 037618
Match_columns 374
No_of_seqs 86 out of 88
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 02:46:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037618.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037618hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04788 DUF620: Protein of un 100.0 3E-139 7E-144 970.0 21.5 241 124-364 1-245 (245)
2 PF14371 DUF4412: Domain of un 46.8 29 0.00062 27.1 3.6 17 228-244 4-20 (89)
3 COG5017 Uncharacterized conser 45.4 7.7 0.00017 36.0 0.3 69 275-350 33-125 (161)
4 PRK09455 rseB anti-sigma E fac 43.0 39 0.00085 33.7 4.8 46 224-281 128-173 (319)
5 PF09865 DUF2092: Predicted pe 40.5 1.2E+02 0.0025 28.9 7.3 88 159-246 45-149 (214)
6 PF03043 Herpes_UL87: Herpesvi 34.4 11 0.00023 40.7 -0.7 68 279-352 337-406 (538)
7 PHA03374 hypothetical protein; 30.0 13 0.00029 41.2 -0.9 68 279-352 519-588 (730)
8 KOG2833 Mevalonate pyrophospha 24.4 65 0.0014 33.6 2.9 67 151-217 160-250 (395)
9 PF03888 MucB_RseB: MucB/RseB 23.8 93 0.002 30.3 3.7 45 222-281 94-141 (285)
10 KOG0189 Phosphoadenosine phosp 23.0 36 0.00078 33.6 0.7 63 116-216 88-151 (261)
11 smart00392 PROF Profilin. Bind 22.6 1.6E+02 0.0035 25.2 4.6 66 178-256 21-87 (129)
12 PHA03375 hypothetical protein; 22.4 23 0.00049 39.8 -0.8 68 279-352 608-677 (844)
13 PF05717 TnpB_IS66: IS66 Orf2 20.2 80 0.0017 27.0 2.2 45 153-217 54-100 (107)
14 PF15586 Imm47: Immunity prote 20.2 1E+02 0.0023 26.8 2.9 30 226-256 32-61 (116)
No 1
>PF04788 DUF620: Protein of unknown function (DUF620); InterPro: IPR006873 This is a family of uncharacterised proteins.
Probab=100.00 E-value=3.3e-139 Score=969.99 Aligned_cols=241 Identities=59% Similarity=1.067 Sum_probs=233.1
Q ss_pred ceeccceeeEeeeecccCcccc-ccccCCceeccEEEEecCCCceEEEEEeeCeEeeeccCCceeeeccCCCCCCCCCCC
Q 037618 124 MCVTGQMKITASEFHQGDIEKS-VNVKSNEETGGFVLWQKDPDLWFLELVVSGCKVICGSNGKLTWRHSSNHQGPISKGP 202 (374)
Q Consensus 124 myA~GkVrM~~se~~~g~~~~~-v~~~~~~e~GgFVlWQ~~Pd~W~~ELvV~G~KV~AGsdGkvaWR~Tpw~g~HaakGp 202 (374)
|||||||||+++||++++.... ...++.+|+||||||||+|||||+||||||+||+||||||||||||||||+||||||
T Consensus 1 mya~GkVrM~~se~~~~~~~~~~~~~~~~~e~GgFVlWQ~~Pd~W~~ELvVgG~KV~AGsdGkvaWR~Tpw~g~HAakGp 80 (245)
T PF04788_consen 1 MYAMGKVRMAASEFEGGSGSVTKVGPTGGGEKGGFVLWQMNPDMWYLELVVGGCKVSAGSDGKVAWRHTPWQGSHAAKGP 80 (245)
T ss_pred CceeeeEEEEEEeeccCCccccccccCcccccccEEEEEeCCCeEEEEEEecceEEeeccCCeeeeecCccccchhhcCC
Confidence 8999999999999998742111 235789999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhhccCCccchhhccccceeeeeeeecCcceeEEEeeCChhhhhhcCCCCeeEEEeeeeccccccccceEEeecc
Q 037618 203 PRPLRRFLQGLDPRSTANLFLDASCIGEKVINNEDCFILKLETSPAIREAQSGPNYEIIHHTIWGYFSQRSGLLIQFEDS 282 (374)
Q Consensus 203 ~RPLRR~lQGLDPr~ta~lF~~A~ciGEk~i~gedCFiLkl~a~~~~l~arS~~~~EiirH~~~GYFSQrtGLLv~lEDs 282 (374)
||||||||||||||+|||||++|+|||||+|||||||||||+||+++|++||++++|||||++|||||||||||||||||
T Consensus 81 ~RPLRR~lQGLDPr~ta~lF~~A~cvGEk~i~gedCFvLkl~ad~~~l~ars~~~~EiirH~~~GYFSQrtGLLv~lEDS 160 (245)
T PF04788_consen 81 PRPLRRFLQGLDPRSTANLFSNAVCVGEKRINGEDCFVLKLEADPSALKARSSGNAEIIRHTLWGYFSQRTGLLVQLEDS 160 (245)
T ss_pred CchHHHHHhhcChhhHHHhhhhceEeeeeccCCcccEEEEeeCCHHHHhhhcCCCcEEEEEeeecccccccceeeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeec--CCCCceEEeecccccccccccccceeeecCCcceEEEEEecccccCccc-cceeeeeeeeeeccCCCCCCc
Q 037618 283 RLLTMKT--KDGNDVFWETSTESVMHDYRYVDGINIAHGGRTRVTVFRYGEQSANHKR-DMEEKWKIEDVDLNIWGLTKD 359 (374)
Q Consensus 283 ~Ltri~~--~~~~~vyWETt~eS~i~DYR~VdGi~IAH~G~t~vtl~RfGe~~~~h~r-rmEE~WtIeeV~FNV~GLS~D 359 (374)
||||||+ +++++|||||||||+|+|||+||||||||+|||+||||||||++++|+| ||||+|+||||||||||||||
T Consensus 161 ~L~ri~~~~~~~~~vyWETt~es~i~DYR~Vdgv~IAH~G~t~vtl~RfGe~~~~h~rTrmEE~W~Ieev~FNV~GLS~D 240 (245)
T PF04788_consen 161 HLTRIQSGRPGGDAVYWETTMESSIEDYRAVDGVNIAHSGRTVVTLFRFGENSMSHSRTRMEETWTIEEVDFNVPGLSMD 240 (245)
T ss_pred eeEEeeecCCCCCceEEEEeecccccccccccceeeeccCCceEEEEecccccccCceeeEeeeeEeeeEEeccCCcchh
Confidence 9999999 7899999999999999999999999999999999999999999999987 999999999999999999999
Q ss_pred ccCCC
Q 037618 360 HFMPP 364 (374)
Q Consensus 360 cFiPP 364 (374)
|||||
T Consensus 241 cFiPP 245 (245)
T PF04788_consen 241 CFIPP 245 (245)
T ss_pred cccCC
Confidence 99999
No 2
>PF14371 DUF4412: Domain of unknown function (DUF4412)
Probab=46.77 E-value=29 Score=27.12 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=15.6
Q ss_pred eeeeeecCcceeEEEee
Q 037618 228 IGEKVINNEDCFILKLE 244 (374)
Q Consensus 228 iGEk~i~gedCFiLkl~ 244 (374)
.|.|+|+|-+|-..++.
T Consensus 4 tGt~tI~G~~c~ky~v~ 20 (89)
T PF14371_consen 4 TGTKTIAGYKCEKYEVT 20 (89)
T ss_pred CCCEEECCEEeEEEEEE
Confidence 58899999999999987
No 3
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=45.42 E-value=7.7 Score=35.97 Aligned_cols=69 Identities=25% Similarity=0.437 Sum_probs=41.8
Q ss_pred ceEEeecceeeeeecCCCCceE---EeecccccccccccccceeeecCCcc-eEEE-------------EEecccccCcc
Q 037618 275 LLIQFEDSRLLTMKTKDGNDVF---WETSTESVMHDYRYVDGINIAHGGRT-RVTV-------------FRYGEQSANHK 337 (374)
Q Consensus 275 LLv~lEDs~Ltri~~~~~~~vy---WETt~eS~i~DYR~VdGi~IAH~G~t-~vtl-------------~RfGe~~~~h~ 337 (374)
|+||+-.+ .+++-+|-.+| -++.|.|.|.||| |.|+|+|-- ..++ .||-|.-.+|.
T Consensus 33 lIvQyGn~---d~kpvagl~v~~F~~~~kiQsli~dar----IVISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQ 105 (161)
T COG5017 33 LIVQYGNG---DIKPVAGLRVYGFDKEEKIQSLIHDAR----IVISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQ 105 (161)
T ss_pred eeeeecCC---CcccccccEEEeechHHHHHHHhhcce----EEEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHH
Confidence 45555553 33333343444 4789999999999 779999863 2333 45555555676
Q ss_pred -------ccceeeeeeeeee
Q 037618 338 -------RDMEEKWKIEDVD 350 (374)
Q Consensus 338 -------rrmEE~WtIeeV~ 350 (374)
..|--.|+...++
T Consensus 106 vela~klae~~~vv~~spte 125 (161)
T COG5017 106 VELALKLAEINYVVACSPTE 125 (161)
T ss_pred HHHHHHHHhcCceEEEcCCc
Confidence 1555566655444
No 4
>PRK09455 rseB anti-sigma E factor; Provisional
Probab=43.03 E-value=39 Score=33.69 Aligned_cols=46 Identities=13% Similarity=0.273 Sum_probs=32.4
Q ss_pred cceeeeeeeecCcceeEEEeeCChhhhhhcCCCCeeEEEeeeeccccccccceEEeec
Q 037618 224 DASCIGEKVINNEDCFILKLETSPAIREAQSGPNYEIIHHTIWGYFSQRSGLLIQFED 281 (374)
Q Consensus 224 ~A~ciGEk~i~gedCFiLkl~a~~~~l~arS~~~~EiirH~~~GYFSQrtGLLv~lED 281 (374)
+-...|+.+|+|-+|++|.+.+--. . |...-=|-++.||||+|.+-
T Consensus 128 ~~~~~g~~rVaGr~~~vi~~~PkD~-------~-----rY~~~lwiD~et~llLk~~~ 173 (319)
T PRK09455 128 DFISVGRTRIADRLCQVIRIVPKDG-------T-----RYSYIVWIDEESKLPLRVDL 173 (319)
T ss_pred eEEEccccEECCeeEEEEEEEECCC-------C-----CcceEEEEEcCCCCEEeEEE
Confidence 4567899999999999999988322 1 11111235788999988764
No 5
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=40.47 E-value=1.2e+02 Score=28.93 Aligned_cols=88 Identities=15% Similarity=0.178 Sum_probs=66.5
Q ss_pred EEecCCCceEEEEEeeCeEeeeccCCceeeeccCCCCCCCCCCCCchh----hhhhc--cCCc-----------cchhhc
Q 037618 159 LWQKDPDLWFLELVVSGCKVICGSNGKLTWRHSSNHQGPISKGPPRPL----RRFLQ--GLDP-----------RSTANL 221 (374)
Q Consensus 159 lWQ~~Pd~W~~ELvV~G~KV~AGsdGkvaWR~Tpw~g~HaakGp~RPL----RR~lQ--GLDP-----------r~ta~l 221 (374)
+|-..||+..++..=++.....=.|||...=..|-+..=|..--|-.| .++.+ |++. .....=
T Consensus 45 v~v~RPdklr~~~~gd~~~~~~~yDGkt~Tl~~~~~n~Ya~~~aP~tid~~i~~l~~~~gi~~P~aDll~~d~~~~l~~~ 124 (214)
T PF09865_consen 45 VTVQRPDKLRIDRRGDGADREFYYDGKTFTLYDPNQNVYAQADAPGTIDAAIDYLRDKYGIELPLADLLYSDPYDALMDG 124 (214)
T ss_pred EEEeCCCeEEEEEEcCCcceEEEECCCEEEEEcCcCCeEEeccCCCCHHHHHHHHHHhhCCCccHHHhcccCchHHHhhc
Confidence 788999999999977779999999999999999998877765544443 22222 3332 222344
Q ss_pred cccceeeeeeeecCcceeEEEeeCC
Q 037618 222 FLDASCIGEKVINNEDCFILKLETS 246 (374)
Q Consensus 222 F~~A~ciGEk~i~gedCFiLkl~a~ 246 (374)
+.+|.+||...|+|..|.-|-...+
T Consensus 125 v~~~~~vG~~~V~G~~c~HlAfr~~ 149 (214)
T PF09865_consen 125 VTSAKYVGQSVVGGVECDHLAFRND 149 (214)
T ss_pred ceEEEEeeeEEECCEEeEEEEEecC
Confidence 5678999999999999999887753
No 6
>PF03043 Herpes_UL87: Herpesvirus UL87 family; InterPro: IPR004285 Members of this family are functionally uncharacterised.
Probab=34.39 E-value=11 Score=40.72 Aligned_cols=68 Identities=21% Similarity=0.381 Sum_probs=50.0
Q ss_pred eecceeeeeecCCCCceEEeecccccccccccccceeeecCCcceEEEEE-ecccccCccc-cceeeeeeeeeecc
Q 037618 279 FEDSRLLTMKTKDGNDVFWETSTESVMHDYRYVDGINIAHGGRTRVTVFR-YGEQSANHKR-DMEEKWKIEDVDLN 352 (374)
Q Consensus 279 lEDs~Ltri~~~~~~~vyWETt~eS~i~DYR~VdGi~IAH~G~t~vtl~R-fGe~~~~h~r-rmEE~WtIeeV~FN 352 (374)
|||-++.| .+-+.|||-|.--|+|. .-||+||.-=--.++|+.| +|+.+.+|.. .+--.=++.++.+|
T Consensus 337 LENQ~vVR---s~R~~VfWTTNFPs~VS---~~~g~Nv~WFKAaTa~i~kv~G~~L~~~~~~E~~~i~~~~~~~i~ 406 (538)
T PF03043_consen 337 LENQSVVR---SGRSDVFWTTNFPSMVS---TKDGVNVSWFKAATATISKVSGRDLENQLLKELSPILTHPDARID 406 (538)
T ss_pred ccchhhhh---ccCCceEEecCCCeEEE---cCCCceeeeeeeccEeecccccHHHHHHHHHHHHHHhCCcceeec
Confidence 69998888 67779999999999988 4688898877777778877 5777776653 44444445555554
No 7
>PHA03374 hypothetical protein; Provisional
Probab=30.03 E-value=13 Score=41.18 Aligned_cols=68 Identities=22% Similarity=0.371 Sum_probs=48.3
Q ss_pred eecceeeeeecCCCCceEEeecccccccccccccceeeecCCcceEEEEE-ecccccCccc-cceeeeeeeeeecc
Q 037618 279 FEDSRLLTMKTKDGNDVFWETSTESVMHDYRYVDGINIAHGGRTRVTVFR-YGEQSANHKR-DMEEKWKIEDVDLN 352 (374)
Q Consensus 279 lEDs~Ltri~~~~~~~vyWETt~eS~i~DYR~VdGi~IAH~G~t~vtl~R-fGe~~~~h~r-rmEE~WtIeeV~FN 352 (374)
|||-++.| .+-+.|||-|..-|+|. .-||+|+.-=--.++|+.| +|..+.+|-. .+--.=++.++-||
T Consensus 519 LEnQ~vVR---~~R~~VfWTTNFPs~vS---~~~g~NVsWFKAATAtIskv~G~~L~~~l~~E~~~I~~~~~a~i~ 588 (730)
T PHA03374 519 LENQSLVR---TGRRDVFWTTNFPSVVS---TKDGLNVSWFKAATATISKIHGRTLVKQVIREVSPILTHRNARIN 588 (730)
T ss_pred ccchhhhh---ccCCceEEecCCCeEEE---cCCCcceeeeeecceeecccccHHHHHHHHHHHHHHhcCccceec
Confidence 67777776 66679999999999987 4688998877777778877 5766666653 44444445555544
No 8
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=24.44 E-value=65 Score=33.58 Aligned_cols=67 Identities=30% Similarity=0.369 Sum_probs=45.2
Q ss_pred CceeccEEEEecC-------------------CCceEEEEEeeC-eEeeeccCCceeeeccCCCCCCCCCC--CCch--h
Q 037618 151 NEETGGFVLWQKD-------------------PDLWFLELVVSG-CKVICGSNGKLTWRHSSNHQGPISKG--PPRP--L 206 (374)
Q Consensus 151 ~~e~GgFVlWQ~~-------------------Pd~W~~ELvV~G-~KV~AGsdGkvaWR~Tpw~g~HaakG--p~RP--L 206 (374)
.+-.||||.|+|. ||+-++=|||++ +|-.+-.-|--.=..|+-+--|-.+- |.|= +
T Consensus 160 RSl~GG~V~W~mG~~~DGsDsvAvq~~p~~~W~el~ililVvs~~~K~t~ST~GM~~sveTS~L~qhRi~~vVP~Ri~~m 239 (395)
T KOG2833|consen 160 RSLYGGFVAWEMGELDDGSDSVAVQIAPSSHWPELRILILVVSDAKKKTGSTEGMRRSVETSQLLQHRIESVVPQRIQQM 239 (395)
T ss_pred hhhhcceeEeecccccCCCceeEEEeccccCCCceEEEEEEeccccccccccHHHHHHHHHhHHHHHHHHhhhHHHHHHH
Confidence 4568999999773 778899999999 66666666766666666666665544 4443 3
Q ss_pred hhhhccCCccc
Q 037618 207 RRFLQGLDPRS 217 (374)
Q Consensus 207 RR~lQGLDPr~ 217 (374)
|+++.-=|--+
T Consensus 240 ~eaI~~rDF~~ 250 (395)
T KOG2833|consen 240 REAIRERDFES 250 (395)
T ss_pred HHHHHhcCHHH
Confidence 66665555433
No 9
>PF03888 MucB_RseB: MucB/RseB family; InterPro: IPR005588 The members of this family are regulators of the anti-sigma E protein RseD.; PDB: 2P4B_B 2V42_B 2V43_A 3M4W_A.
Probab=23.84 E-value=93 Score=30.32 Aligned_cols=45 Identities=20% Similarity=0.443 Sum_probs=31.5
Q ss_pred cccceeeeeeeecCcceeEEEeeCChhhhhhcCCCCeeEEEeeeecc---ccccccceEEeec
Q 037618 222 FLDASCIGEKVINNEDCFILKLETSPAIREAQSGPNYEIIHHTIWGY---FSQRSGLLIQFED 281 (374)
Q Consensus 222 F~~A~ciGEk~i~gedCFiLkl~a~~~~l~arS~~~~EiirH~~~GY---FSQrtGLLv~lED 281 (374)
+=+....|..+|-|-+|-+|+|.+--.-. ||| -++.||||+|.+-
T Consensus 94 ~Y~~~~~G~~RVAGr~a~~i~l~PkD~~R---------------Ygy~lWiD~etgLlLK~~~ 141 (285)
T PF03888_consen 94 HYQFVLGGRERVAGREAQVIRLEPKDDYR---------------YGYRLWIDEETGLLLKSDL 141 (285)
T ss_dssp TEEEEEEEEEEETTEEEEEEEEEETTS-S----------------EEEEEEETTT--EEEEEE
T ss_pred cCceEECCCceECCCEEEEEEEEEcCCCc---------------eEEEEEEEcCCCCEEeeee
Confidence 34557889999999999999999732221 343 4899999998763
No 10
>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism]
Probab=22.98 E-value=36 Score=33.60 Aligned_cols=63 Identities=27% Similarity=0.452 Sum_probs=39.0
Q ss_pred HHHhhhhhceeccceeeEeeeecccCcccccccc-CCceeccEEEEecCCCceEEEEEeeCeEeeeccCCceeeeccCCC
Q 037618 116 AALNAVHSMCVTGQMKITASEFHQGDIEKSVNVK-SNEETGGFVLWQKDPDLWFLELVVSGCKVICGSNGKLTWRHSSNH 194 (374)
Q Consensus 116 k~~~~v~smyA~GkVrM~~se~~~g~~~~~v~~~-~~~e~GgFVlWQ~~Pd~W~~ELvV~G~KV~AGsdGkvaWR~Tpw~ 194 (374)
.+.++|+--|.. +|+-.- |.. .+.+. -...+|||-+|-..-+..|.
T Consensus 88 ~l~d~VekkY~~--i~I~~~-~pd-----~~e~ea~~~~K~~~~~~E~~~q~~~~------------------------- 134 (261)
T KOG0189|consen 88 RLFDAVEKKYGN--IRIHVY-FPD-----AVEVEALFASKGGFSLWEDDHQEYDR------------------------- 134 (261)
T ss_pred HHHHHHHHhcCc--eEEEEE-cch-----hHHHHHHHHhccchhheecCchhhhh-------------------------
Confidence 456777777753 433210 111 12221 13458999999987766553
Q ss_pred CCCCCCCCCchhhhhhccCCcc
Q 037618 195 QGPISKGPPRPLRRFLQGLDPR 216 (374)
Q Consensus 195 g~HaakGp~RPLRR~lQGLDPr 216 (374)
---+||+|||+.||+-+
T Consensus 135 -----l~KV~P~~RA~k~L~v~ 151 (261)
T KOG0189|consen 135 -----LRKVEPARRAYKGLNVK 151 (261)
T ss_pred -----hhhccHHHHHhhcccee
Confidence 11479999999999987
No 11
>smart00392 PROF Profilin. Binds actin monomers, membrane polyphosphoinositides and poly-L-proline.
Probab=22.61 E-value=1.6e+02 Score=25.21 Aligned_cols=66 Identities=14% Similarity=0.309 Sum_probs=33.7
Q ss_pred eeeccCCceeeeccCCCCC-CCCCCCCchhhhhhccCCccchhhccccceeeeeeeecCcceeEEEeeCChhhhhhcCCC
Q 037618 178 VICGSNGKLTWRHSSNHQG-PISKGPPRPLRRFLQGLDPRSTANLFLDASCIGEKVINNEDCFILKLETSPAIREAQSGP 256 (374)
Q Consensus 178 V~AGsdGkvaWR~Tpw~g~-HaakGp~RPLRR~lQGLDPr~ta~lF~~A~ciGEk~i~gedCFiLkl~a~~~~l~arS~~ 256 (374)
.+.|.||. +|-+||--.. .....-...|-.+++ || +.+|.+-. .++|+.||+|+-+ ...+.+|.+.
T Consensus 21 aI~g~dGs-vWA~s~g~~f~~~~~~E~~~i~~~f~--~~---~~~~~~Gi-----~l~G~Ky~~~~~d--~~~i~~kk~~ 87 (129)
T smart00392 21 AIGGKDGS-VWAASAGGNFQKITPEEIAAIAALFN--SL---AAVFSNGL-----TLGGQKYMVIRAD--DRSIMGKKGA 87 (129)
T ss_pred EEEeCCCC-eeeccCCCCCCcCCHHHHHHHHHHcc--Cc---chhccCCe-----EECCeEEEEEEec--CcEEEeecCC
Confidence 35677886 4888875211 111122222322222 22 23333322 6778899999864 4555555543
No 12
>PHA03375 hypothetical protein; Provisional
Probab=22.41 E-value=23 Score=39.84 Aligned_cols=68 Identities=18% Similarity=0.330 Sum_probs=48.9
Q ss_pred eecceeeeeecCCCCceEEeecccccccccccccceeeecCCcceEEEEE-ecccccCccc-cceeeeeeeeeecc
Q 037618 279 FEDSRLLTMKTKDGNDVFWETSTESVMHDYRYVDGINIAHGGRTRVTVFR-YGEQSANHKR-DMEEKWKIEDVDLN 352 (374)
Q Consensus 279 lEDs~Ltri~~~~~~~vyWETt~eS~i~DYR~VdGi~IAH~G~t~vtl~R-fGe~~~~h~r-rmEE~WtIeeV~FN 352 (374)
|||-++.| .+-+.|||-|..-|+|. .-||+|+.-=--.++|+.| +|..+.+|.. .+--.=++.++-||
T Consensus 608 LEnQ~vVR---s~R~~VfWTTNFPs~IS---~~~g~NVsWFKAATAtIskV~G~~L~~~l~kEl~~I~~~~~a~id 677 (844)
T PHA03375 608 LEDQSVVR---SERSKVYWTTNFPCMIS---NTDNVNVGWFKAATAIIPRVSGRDLENVLLKELSCIKEIRDLCID 677 (844)
T ss_pred ccchhhhh---ccCCceEEecCCCeEEE---cCCCcceeeeeeccEeccccccHHHHHHHHHHHHHHhcCccceec
Confidence 78888887 66779999999999987 4678888776666777777 5666666653 44444455555554
No 13
>PF05717 TnpB_IS66: IS66 Orf2 like protein; InterPro: IPR008878 Thess proteins are found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=20.21 E-value=80 Score=26.96 Aligned_cols=45 Identities=24% Similarity=0.423 Sum_probs=26.7
Q ss_pred eeccEEEEecCCCceEEEEEeeCeEeeeccCCceeeeccCCCCCCCCCCC--CchhhhhhccCCccc
Q 037618 153 ETGGFVLWQKDPDLWFLELVVSGCKVICGSNGKLTWRHSSNHQGPISKGP--PRPLRRFLQGLDPRS 217 (374)
Q Consensus 153 e~GgFVlWQ~~Pd~W~~ELvV~G~KV~AGsdGkvaWR~Tpw~g~HaakGp--~RPLRR~lQGLDPr~ 217 (374)
+.+||+||.|.-+. |+-.| |....-.+.=. +.-|.--|+|+|++.
T Consensus 54 d~~G~~L~~KRLe~-----------------G~F~w---P~~~~~~~~~~lt~~qL~~Ll~Gi~~~~ 100 (107)
T PF05717_consen 54 DGDGFWLYYKRLER-----------------GRFKW---PRDSEEDGAVELTWEQLSWLLEGIDWRR 100 (107)
T ss_pred cCCceEEeeeeecC-----------------CEEec---CcccccCceEEECHHHHHHHHcCCCccc
Confidence 57899999998765 44455 33222111111 122677889999874
No 14
>PF15586 Imm47: Immunity protein 47
Probab=20.17 E-value=1e+02 Score=26.79 Aligned_cols=30 Identities=20% Similarity=0.125 Sum_probs=25.6
Q ss_pred eeeeeeeecCcceeEEEeeCChhhhhhcCCC
Q 037618 226 SCIGEKVINNEDCFILKLETSPAIREAQSGP 256 (374)
Q Consensus 226 ~ciGEk~i~gedCFiLkl~a~~~~l~arS~~ 256 (374)
.+||..-.+|.|.|=+.+++ |+.|..+...
T Consensus 32 l~IG~~~~~G~d~F~v~VcT-P~wL~~~~~~ 61 (116)
T PF15586_consen 32 LDIGPEGEDGSDYFQVFVCT-PKWLSKNCWK 61 (116)
T ss_pred EEECCCCCCccceEEEEEEc-HHHHHHhhcC
Confidence 68999999999999999999 7888776544
Done!