BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037620
(330 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 168 DAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEA---------YSVFKRMSRKPGTE 218
+A R+ DE R+ G+ + Y+++L+ A E+ + +FK+M
Sbjct: 44 EALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD-KVV 102
Query: 219 PTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDA 275
P +T+ R+ +MA + +MKA G+ P + Y + C + D A
Sbjct: 103 PNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA 159
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 169 AYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRM 211
A+ M+ +M+ GI P R+Y L + G ++AY V M
Sbjct: 124 AFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 35/190 (18%), Positives = 73/190 (38%), Gaps = 14/190 (7%)
Query: 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMR-----------INDAYRMMDEMRKCGI 181
EAL+ + ++++ G + YN ++ Y S+ ++ + + +M +
Sbjct: 44 EALRLYDEARRNGVQLSQYHYNVLL--YVCSLAEAATESSPNPGLSRGFDIFKQMIVDKV 101
Query: 182 GPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAM 241
PN T+ + E A+ + K+M + G +P + +Y + FC D A
Sbjct: 102 VPNEATFTNGARLAVAKDDPEMAFDMVKQM-KAFGIQPRLRSYGPALFGFCRKGDADKAY 160
Query: 242 RIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQAL 301
+ M V+P + L+ D K Q + D+ + F +++
Sbjct: 161 EVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWF 220
Query: 302 RDEGMEETAV 311
+ E +T V
Sbjct: 221 KSEVATKTGV 230
>pdb|3V4P|B Chain B, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1
pdb|3V4P|D Chain D, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1
pdb|3V4V|B Chain B, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1 And Ro0505376
pdb|3V4V|D Chain D, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1 And Ro0505376
Length = 503
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 89 AHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEP 148
C+ R ++ V + ++AT+C P PH+ + LG + L L +P
Sbjct: 407 GQCNHVRINQTVTFWVSLQATHCLPEPHLL--RLRALGFSEELIVELHTLCDCNCSDTQP 464
Query: 149 EAP 151
+AP
Sbjct: 465 QAP 467
>pdb|1U5J|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit,
Met186ile
Length = 539
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 27/150 (18%)
Query: 184 NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRM-FCYNAQVDMAMR 242
T ++ L I+AG + + MS PG PT S E++ + N D +
Sbjct: 230 TTGVTEVSLMKAIEAG-VDVVDTAISSMSLGPGHNPTESVAEMLEGTGYTTNLDYDRLHK 288
Query: 243 IWDEMKARGVLPVMHMYS--TLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
I D KA + P + TL+++ + ++ PG + SN++
Sbjct: 289 IRDHFKA--IRPKYKKFESKTLVDTSIFKSQI-----------------PGGMLSNMESQ 329
Query: 301 LRDEGMEETAVVLAQKIDKLRKT----PLV 326
LR +G E+ + ++ ++RK PLV
Sbjct: 330 LRAQGAEDKMDEVMAEVPRVRKAAGFPPLV 359
>pdb|1RQE|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit
Bound To Oxaloacetate
Length = 539
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 27/150 (18%)
Query: 184 NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRM-FCYNAQVDMAMR 242
T ++ L I+AG + + MS PG PT S E++ + N D +
Sbjct: 230 TTGVTEVSLMKAIEAG-VDVVDTAISSMSLGPGHNPTESVAEMLEGTGYTTNLDYDRLHK 288
Query: 243 IWDEMKARGVLPVMHMYS--TLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
I D KA + P + TL+++ + ++ PG + SN++
Sbjct: 289 IRDHFKA--IRPKYKKFESKTLVDTSIFKSQI-----------------PGGMLSNMESQ 329
Query: 301 LRDEGMEETAVVLAQKIDKLRKT----PLV 326
LR +G E+ + ++ ++RK PLV
Sbjct: 330 LRAQGAEDKMDEVMAEVPRVRKAAGFPPLV 359
>pdb|1RR2|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit
Bound To 2- Ketobutyric Acid
Length = 473
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 27/150 (18%)
Query: 184 NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRM-FCYNAQVDMAMR 242
T ++ L I+AG + + MS PG PT S E++ + N D +
Sbjct: 218 TTGVTEVSLMKAIEAG-VDVVDTAISSMSLGPGHNPTESVAEMLEGTGYTTNLDYDRLHK 276
Query: 243 IWDEMKARGVLPVMHMYS--TLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
I D KA + P + TL+++ + ++ PG + SN++
Sbjct: 277 IRDHFKA--IRPKYKKFESKTLVDTSIFKSQI-----------------PGGMLSNMESQ 317
Query: 301 LRDEGMEETAVVLAQKIDKLRKT----PLV 326
LR +G E+ + ++ ++RK PLV
Sbjct: 318 LRAQGAEDKMDEVMAEVPRVRKAAGFPPLV 347
>pdb|1RQH|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit
Bound To Pyruvic Acid
Length = 472
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 27/150 (18%)
Query: 184 NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRM-FCYNAQVDMAMR 242
T ++ L I+AG + + MS PG PT S E++ + N D +
Sbjct: 217 TTGVTEVSLMKAIEAG-VDVVDTAISSMSLGPGHNPTESVAEMLEGTGYTTNLDYDRLHK 275
Query: 243 IWDEMKARGVLPVMHMYS--TLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
I D KA + P + TL+++ + ++ PG + SN++
Sbjct: 276 IRDHFKA--IRPKYKKFESKTLVDTSIFKSQI-----------------PGGMLSNMESQ 316
Query: 301 LRDEGMEETAVVLAQKIDKLRKT----PLV 326
LR +G E+ + ++ ++RK PLV
Sbjct: 317 LRAQGAEDKMDEVMAEVPRVRKAAGFPPLV 346
>pdb|1S3H|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit
A59t
Length = 539
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 27/150 (18%)
Query: 184 NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRM-FCYNAQVDMAMR 242
T ++ L I+AG + + MS PG PT S E++ + N D +
Sbjct: 230 TTGVTEVSLMKAIEAG-VDVVDTAISSMSLGPGHNPTESVAEMLEGTGYTTNLDYDRLHK 288
Query: 243 IWDEMKARGVLPVMHMYS--TLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
I D KA + P + TL+++ + ++ PG + SN++
Sbjct: 289 IRDHFKA--IRPKYKKFESKTLVDTSIFKSQI-----------------PGGMLSNMESQ 329
Query: 301 LRDEGMEETAVVLAQKIDKLRKT----PLV 326
LR +G E+ + ++ ++RK PLV
Sbjct: 330 LRAQGAEDKMDEVMAEVPRVRKAAGFPPLV 359
>pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase
Length = 1134
Score = 29.3 bits (64), Expect = 3.4, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 48 YTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREME 107
Y ++ GW +Q + V +KD G PD++SY + C ++ +A + R +E
Sbjct: 168 YNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL--QCMGRQDQDAGTIERCLE 225
>pdb|2RIL|A Chain A, Crystal Structure Of A Putative Monooxygenase
(Yp_001095275.1) From Shewanella Loihica Pv-4 At 1.26 A
Resolution
Length = 99
Score = 28.9 bits (63), Expect = 3.7, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 261 TLINSL-CHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 305
TLIN DKL+ A +Y++ D + PG L + L Q++ DEG
Sbjct: 7 TLINPFKVPADKLEAAIEYWEAHRDFXAQQPGYLSTQLHQSI-DEG 51
>pdb|2UY1|B Chain B, Crystal Structure Of Cstf-77
Length = 493
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 195 LIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVV-RMFCYNAQVDMAMRIWDEMKARGVL 253
L++ G E A ++FKR+ + ++ YE +V M + VD M D +KA +L
Sbjct: 364 LLRIGDEENARALFKRLEKTSRMWDSMIEYEFMVGSMELFRELVDQKM---DAIKADAIL 420
Query: 254 P 254
P
Sbjct: 421 P 421
>pdb|2UY1|A Chain A, Crystal Structure Of Cstf-77
Length = 493
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 195 LIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVV-RMFCYNAQVDMAMRIWDEMKARGVL 253
L++ G E A ++FKR+ + ++ YE +V M + VD M D +KA +L
Sbjct: 364 LLRIGDEENARALFKRLEKTSRMWDSMIEYEFMVGSMELFRELVDQKM---DAIKADAIL 420
Query: 254 P 254
P
Sbjct: 421 P 421
>pdb|4IIN|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Helicobacter Pylori 26695
Complexed With Nad+
pdb|4IIN|B Chain B, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Helicobacter Pylori 26695
Complexed With Nad+
pdb|4IIN|C Chain C, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Helicobacter Pylori 26695
Complexed With Nad+
pdb|4IIN|D Chain D, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Helicobacter Pylori 26695
Complexed With Nad+
pdb|4IJK|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Helicobacter Pylori 26695
pdb|4IJK|B Chain B, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Helicobacter Pylori 26695
pdb|4IJK|C Chain C, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Helicobacter Pylori 26695
pdb|4IJK|D Chain D, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier
Protein]reductase From Helicobacter Pylori 26695
Length = 271
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 34/151 (22%)
Query: 2 DKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLE--GWGQ-- 57
DK +K + DF+ +ID S + +E M K RF + +I+ E GQ
Sbjct: 120 DKLAIKMKTEDFHHVIDNNLTSAFI-GCREALKVMSKSRFGSVVNVASIIGERGNMGQTN 178
Query: 58 ----QKNLLSMNEVY------REMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREME 107
+ +++M++ + R ++ + P + D L E++
Sbjct: 179 YSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFI-------------ETDMNANLKDELK 225
Query: 108 ATNCKPSPHIFCTLINGLGSEKRLSEALQFF 138
A K P +N LGS K ++EA+ F
Sbjct: 226 ADYVKNIP------LNRLGSAKEVAEAVAFL 250
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 8/144 (5%)
Query: 107 EATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPE-APTYNAVVGAYCWSMR 165
E+ N P+P+ + L L ++ E +FF K PE PTY Y
Sbjct: 264 ESINLHPTPNSYIFLALTLADKENSQEFFKFF--QKAVDLNPEYPPTYYHRGQMYFILQD 321
Query: 166 INDAYRMMDEMRKCGIGP-NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTY 224
+A D + + P N Y + L K G+ E+ + F K T P V T+
Sbjct: 322 YKNAKE--DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTF 379
Query: 225 EIVVRMFCYNAQVDMAMRIWDEMK 248
+ D A++ +D K
Sbjct: 380 --FAEILTDRGDFDTAIKQYDIAK 401
>pdb|3JYH|A Chain A, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|B Chain B, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|C Chain C, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|D Chain D, Human Dipeptidyl Peptidase Dpp7
pdb|3N0T|A Chain A, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|B Chain B, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|C Chain C, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|D Chain D, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
Length = 469
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
+G ++ LSEA + G G YNA +C+ I Y + CG GP+
Sbjct: 268 VGCDRLLSEAQRITGLRALAGL-----VYNASGSEHCYD--IYRLYHSCADPTGCGTGPD 320
Query: 185 TRTYD 189
R +D
Sbjct: 321 ARAWD 325
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 8/144 (5%)
Query: 107 EATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPE-APTYNAVVGAYCWSMR 165
E+ N P+P+ + L L ++ E +FF K PE PTY Y
Sbjct: 268 ESINLHPTPNSYIFLALTLADKENSQEFFKFF--QKAVDLNPEYPPTYYHRGQMYFILQD 325
Query: 166 INDAYRMMDEMRKCGIGP-NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTY 224
+A D + + P N Y + L K G+ E+ + F K T P V T+
Sbjct: 326 YKNAKE--DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTF 383
Query: 225 EIVVRMFCYNAQVDMAMRIWDEMK 248
+ D A++ +D K
Sbjct: 384 --FAEILTDRGDFDTAIKQYDIAK 405
>pdb|4EBB|A Chain A, Structure Of Dpp2
pdb|4EBB|B Chain B, Structure Of Dpp2
Length = 472
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
+G ++ LSEA + G G YNA +C+ I Y + CG GP+
Sbjct: 265 VGCDRLLSEAQRITGLRALAGL-----VYNASGSEHCYD--IYRLYHSCADPTGCGTGPD 317
Query: 185 TRTYD 189
R +D
Sbjct: 318 ARAWD 322
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,831,051
Number of Sequences: 62578
Number of extensions: 401324
Number of successful extensions: 892
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 883
Number of HSP's gapped (non-prelim): 27
length of query: 330
length of database: 14,973,337
effective HSP length: 99
effective length of query: 231
effective length of database: 8,778,115
effective search space: 2027744565
effective search space used: 2027744565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)