BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037620
(330 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060,
mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2
SV=1
Length = 510
Score = 481 bits (1237), Expect = e-135, Method: Compositional matrix adjust.
Identities = 219/326 (67%), Positives = 271/326 (83%), Gaps = 4/326 (1%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M++FG K E DFNR++DTL KSR+V AQ+VFDKMKK+RF+PDIKSYTILLEGWGQ+ N
Sbjct: 188 MEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWGQELN 247
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
LL ++EV REMKD+GFEPDVV+YGI+INAHC AK+Y+EA+ F EME NCKPSPHIFC+
Sbjct: 248 LLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFCS 307
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LINGLGSEK+L++AL+FF +SK GF EAPTYNA+VGAYCWS R+ DAY+ +DEMR G
Sbjct: 308 LINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLKG 367
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+GPN RTYDI+LHHLI+ R++EAY V++ MS EPTVSTYEI+VRMFC ++DMA
Sbjct: 368 VGPNARTYDIILHHLIRMQRSKEAYEVYQTMS----CEPTVSTYEIMVRMFCNKERLDMA 423
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
++IWDEMK +GVLP MHM+S+LI +LCHE+KLD+AC+YF EMLD+GIRPPG +FS LKQ
Sbjct: 424 IKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPPGHMFSRLKQT 483
Query: 301 LRDEGMEETAVVLAQKIDKLRKTPLV 326
L DEG ++ L K+D+LRKT LV
Sbjct: 484 LLDEGRKDKVTDLVVKMDRLRKTQLV 509
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 8/133 (6%)
Query: 191 VLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR 250
VL L AG A SVFK + G + T S Y ++ Q + + D+MKA+
Sbjct: 100 VLKKLSNAGVL--ALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAK 157
Query: 251 GVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETA 310
+L ++ + K+ +A F +M + G + F+ + L +
Sbjct: 158 KLLS-KETFALISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLS----KSRN 212
Query: 311 VVLAQKI-DKLRK 322
V AQK+ DK++K
Sbjct: 213 VGDAQKVFDKMKK 225
>sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360,
mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2
SV=2
Length = 517
Score = 287 bits (734), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 134/327 (40%), Positives = 209/327 (63%), Gaps = 3/327 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M+K+ L L FN L+ LCKS++V +AQEVF+ M+ R F PD K+Y+ILLEGWG++ N
Sbjct: 194 MEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRDR-FTPDSKTYSILLEGWGKEPN 252
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L EV+REM D G PD+V+Y IM++ C A R DEA+ + R M+ + CKP+ I+
Sbjct: 253 LPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSV 312
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
L++ G+E RL EA+ F + ++ G + + +N+++GA+C + R+ + YR++ EM+ G
Sbjct: 313 LVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKG 372
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+ PN+++ +I+L HLI+ G +EA+ VF++M + EP TY +V++MFC +++ A
Sbjct: 373 VTPNSKSCNIILRHLIERGEKDEAFDVFRKMIK--VCEPDADTYTMVIKMFCEKKEMETA 430
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
++W M+ +GV P MH +S LIN LC E AC +EM+++GIRP G F L+Q
Sbjct: 431 DKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRLRQL 490
Query: 301 LRDEGMEETAVVLAQKIDKLRKTPLVD 327
L E E+ L +K++ L PL D
Sbjct: 491 LIKEEREDVLKFLNEKMNVLVNEPLCD 517
Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 104/230 (45%), Gaps = 3/230 (1%)
Query: 72 KDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRL 131
K +E V +Y +MI + ++Y +L M + FC ++ +++
Sbjct: 126 KQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKK-MLNVETFCIVMRKYARAQKV 184
Query: 132 SEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIV 191
EA+ F +K P +N ++ A C S + A + + MR P+++TY I+
Sbjct: 185 DEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRD-RFTPDSKTYSIL 243
Query: 192 LHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG 251
L K +A VF+ M G P + TY I+V + C +VD A+ I M
Sbjct: 244 LEGWGKEPNLPKAREVFREMI-DAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSI 302
Query: 252 VLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQAL 301
P +YS L+++ E++L++A F EM G++ +F++L A
Sbjct: 303 CKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAF 352
>sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730
OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1
Length = 638
Score = 180 bits (456), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/312 (32%), Positives = 180/312 (57%), Gaps = 8/312 (2%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M K+GL+ + F L+D LCK+ V+ A +VF+ M+++ F P+++ +T LL GW ++
Sbjct: 193 MPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREK-FPPNLRYFTSLLYGWCREGK 251
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L+ EV +MK+ G EPD+V + +++ + A + +A +L +M +P+ + +
Sbjct: 252 LMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTV 311
Query: 121 LINGLG-SEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYC-WSMRINDAYRMMDEMRK 178
LI L +EKR+ EA++ F + ++ G E + TY A++ +C W M I+ Y ++D+MRK
Sbjct: 312 LIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGM-IDKGYSVLDDMRK 370
Query: 179 CGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVD 238
G+ P+ TY ++ K + EE + ++M R+ G P + Y +V+R+ C +V
Sbjct: 371 KGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRR-GCHPDLLIYNVVIRLACKLGEVK 429
Query: 239 MAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPP---GQLFS 295
A+R+W+EM+A G+ P + + +IN + L +AC +F+EM+ GI G L S
Sbjct: 430 EAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSAPQYGTLKS 489
Query: 296 NLKQALRDEGME 307
L +RD+ +E
Sbjct: 490 LLNNLVRDDKLE 501
Score = 112 bits (279), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 73/324 (22%), Positives = 153/324 (47%), Gaps = 4/324 (1%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQ-QK 59
M + GL+ ++ F L+ + + A ++ + M+KR F+P++ YT+L++ + +K
Sbjct: 262 MKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEK 321
Query: 60 NLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFC 119
+ V+ EM+ G E D+V+Y +I+ C D+ + +M PS +
Sbjct: 322 RMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYM 381
Query: 120 TLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179
++ +++ E L+ + K+RG P+ YN V+ C + +A R+ +EM
Sbjct: 382 QIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEAN 441
Query: 180 GIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRM-SRKPGTEPTVSTYEIVVRMFCYNAQVD 238
G+ P T+ I+++ G EA + FK M SR + P T + ++ + +++
Sbjct: 442 GLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSAPQYGTLKSLLNNLVRDDKLE 501
Query: 239 MAMRIWDEM--KARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSN 296
MA +W + K + ++ I++L + + +AC Y +M+++ + P ++
Sbjct: 502 MAKDVWSCISNKTSSCELNVSAWTIWIHALYAKGHVKEACSYCLDMMEMDLMPQPNTYAK 561
Query: 297 LKQALRDEGMEETAVVLAQKIDKL 320
L + L A + +K+ K+
Sbjct: 562 LMKGLNKLYNRTIAAEITEKVVKM 585
Score = 112 bits (279), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 78/316 (24%), Positives = 150/316 (47%), Gaps = 8/316 (2%)
Query: 16 LIDTLCKSRHVERAQEVFDKMKKRR---FDPDIKSYTILLEGWGQQKNLLSMNEVYREMK 72
++ L K R + ++M+K +P++ + +L+ + + EV EM
Sbjct: 137 MVMILSKMRQFGAVWGLIEEMRKTNPELIEPEL--FVVLMRRFASANMVKKAVEVLDEMP 194
Query: 73 DDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132
G EPD +G +++A C EA ++F +M P+ F +L+ G E +L
Sbjct: 195 KYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMR-EKFPPNLRYFTSLLYGWCREGKLM 253
Query: 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVL 192
EA + Q K+ G EP+ + ++ Y + ++ DAY +M++MRK G PN Y +++
Sbjct: 254 EAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLI 313
Query: 193 HHLIKA-GRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG 251
L + R +EA VF M R G E + TY ++ FC +D + D+M+ +G
Sbjct: 314 QALCRTEKRMDEAMRVFVEMERY-GCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKG 372
Query: 252 VLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAV 311
V+P Y ++ + +++ ++ + ++M G P +++ + + G + AV
Sbjct: 373 VMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAV 432
Query: 312 VLAQKIDKLRKTPLVD 327
L +++ +P VD
Sbjct: 433 RLWNEMEANGLSPGVD 448
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 170 bits (431), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/313 (31%), Positives = 165/313 (52%), Gaps = 1/313 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
MD G ++ + LID LC +R ++ A+EVF+KMK R PD +Y LL+ + ++
Sbjct: 284 MDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRD 343
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L S+ + + EM+ DG PDVV++ I+++A C A + EA + M P+ H + T
Sbjct: 344 LDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNT 403
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LI GL RL +AL+ FG + G +P A TY + Y S A ++M+ G
Sbjct: 404 LICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKG 463
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
I PN + L+ L KAGR EA +F + + G P TY ++++ + ++D A
Sbjct: 464 IAPNIVACNASLYSLAKAGRDREAKQIFYGL-KDIGLVPDSVTYNMMMKCYSKVGEIDEA 522
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+++ EM G P + + ++LIN+L D++D+A K F M ++ ++P ++ L
Sbjct: 523 IKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAG 582
Query: 301 LRDEGMEETAVVL 313
L G + A+ L
Sbjct: 583 LGKNGKIQEAIEL 595
Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 163/316 (51%), Gaps = 3/316 (0%)
Query: 4 FGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLS 63
G++ +LP +N LI L ++ +E AQ+VF ++K PD+ +Y LL+ +G+ +
Sbjct: 779 LGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDE 838
Query: 64 MNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFRE-MEATNCKPSPHIFCTLI 122
+ E+Y+EM E + +++ I+I+ A D+A++L+ + M + P+ + LI
Sbjct: 839 LFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLI 898
Query: 123 NGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIG 182
+GL RL EA Q F G P YN ++ + + + A + M K G+
Sbjct: 899 DGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVR 958
Query: 183 PNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMR 242
P+ +TY +++ L GR +E FK + ++ G P V Y +++ + +++ A+
Sbjct: 959 PDLKTYSVLVDCLCMVGRVDEGLHYFKEL-KESGLNPDVVCYNLIINGLGKSHRLEEALV 1017
Query: 243 IWDEMK-ARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQAL 301
+++EMK +RG+ P ++ Y++LI +L +++A K + E+ G+ P F+ L +
Sbjct: 1018 LFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGY 1077
Query: 302 RDEGMEETAVVLAQKI 317
G E A + Q +
Sbjct: 1078 SLSGKPEHAYAVYQTM 1093
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 172/378 (45%), Gaps = 52/378 (13%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M +FG +N LI L KSR A EV+ +M F P +++Y+ L+ G G++++
Sbjct: 179 MREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRD 238
Query: 61 LLS--------------------------------MNEVY---REMKDDGFEPDVVSYGI 85
+ S +NE Y + M D+G PDVV+Y +
Sbjct: 239 IDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTV 298
Query: 86 MINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRG 145
+I+A C+A++ D A E+F +M+ KP + TL++ + L QF+ + +K G
Sbjct: 299 LIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDG 358
Query: 146 FEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAY 205
P+ T+ +V A C + +A+ +D MR GI PN TY+ ++ L++ R ++A
Sbjct: 359 HVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDAL 418
Query: 206 SVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINS 265
+F M G +PT TY + + + + A+ +++MK +G+ P + + + S
Sbjct: 419 ELFGNM-ESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYS 477
Query: 266 LCHEDKLDDACKYFQEMLDIGIRPPGQLFS----------------NLKQALRDEGMEET 309
L + +A + F + DIG+ P ++ L + + G E
Sbjct: 478 LAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPD 537
Query: 310 AVVLAQKIDKLRKTPLVD 327
+V+ I+ L K VD
Sbjct: 538 VIVVNSLINTLYKADRVD 555
Score = 118 bits (295), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 135/315 (42%), Gaps = 34/315 (10%)
Query: 14 NRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKD 73
N +++ L +E VFD M+KR D +Y + + + L R+M++
Sbjct: 122 NYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMRE 181
Query: 74 DGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSE 133
GF + SY +I+ ++ EA+E++R M +PS + +L+ GLG + +
Sbjct: 182 FGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDS 241
Query: 134 ALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLH 193
+ + + G +P T+ + + +IN+AY ++ M G GP+ TY +++
Sbjct: 242 VMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLID 301
Query: 194 HLIKAGRTEEAYSVFKRMS----------------------------------RKPGTEP 219
L A + + A VF++M K G P
Sbjct: 302 ALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVP 361
Query: 220 TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYF 279
V T+ I+V C A D M+ +G+LP +H Y+TLI L +LDDA + F
Sbjct: 362 DVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELF 421
Query: 280 QEMLDIGIRPPGQLF 294
M +G++P +
Sbjct: 422 GNMESLGVKPTAYTY 436
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 136/278 (48%), Gaps = 1/278 (0%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G+ L +N LI L + ++ A E+F M+ P +Y + ++ +G+ + +S
Sbjct: 393 GILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSA 452
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
E + +MK G P++V+ + + A R EA ++F ++ P + ++
Sbjct: 453 LETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKC 512
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
+ EA++ + + G EP+ N+++ + R+++A++M M++ + P
Sbjct: 513 YSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPT 572
Query: 185 TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244
TY+ +L L K G+ +EA +F+ M +K G P T+ + C N +V +A+++
Sbjct: 573 VVTYNTLLAGLGKNGKIQEAIELFEGMVQK-GCPPNTITFNTLFDCLCKNDEVTLALKML 631
Query: 245 DEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEM 282
+M G +P + Y+T+I L ++ +A +F +M
Sbjct: 632 FKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQM 669
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 141/319 (44%), Gaps = 5/319 (1%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M+ G+K + ID KS A E F+KMK + P+I + L +
Sbjct: 424 MESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGR 483
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+++ +KD G PD V+Y +M+ + DEA++L EM C+P + +
Sbjct: 484 DREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNS 543
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LIN L R+ EA + F + K+ +P TYN ++ + +I +A + + M + G
Sbjct: 544 LINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKG 603
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYS-VFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDM 239
PNT T++ + L K A +FK M G P V TY ++ N QV
Sbjct: 604 CPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDM--GCVPDVFTYNTIIFGLVKNGQVKE 661
Query: 240 AMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLF-SNLK 298
AM + +MK + V P TL+ + ++DA K L P LF +L
Sbjct: 662 AMCFFHQMK-KLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLI 720
Query: 299 QALRDEGMEETAVVLAQKI 317
++ E + AV ++++
Sbjct: 721 GSILAEAGIDNAVSFSERL 739
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 134/298 (44%), Gaps = 31/298 (10%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G+ + N + +L K+ A+++F +K PD +Y ++++ + + +
Sbjct: 463 GIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEA 522
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
++ EM ++G EPDV+ +IN A R DEA ++F M+ KP+ + TL+ G
Sbjct: 523 IKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAG 582
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
LG ++ EA++ F ++G P T+N + C + + A +M+ +M G P+
Sbjct: 583 LGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPD 642
Query: 185 TRTYDIVLHHLIKAGRTEEAYSVFKRMSR------------KPGTEPTV---STYEIVVR 229
TY+ ++ L+K G+ +EA F +M + PG Y+I+
Sbjct: 643 VFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVKASLIEDAYKIITN 702
Query: 230 MFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGI 287
F YN A W++ LI S+ E +D+A + + ++ GI
Sbjct: 703 -FLYNCADQPANLFWED---------------LIGSILAEAGIDNAVSFSERLVANGI 744
Score = 101 bits (251), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 97/190 (51%), Gaps = 1/190 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M +G + +N LI+ K+ + A +F +M K PD+K+Y++L++
Sbjct: 917 MLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGR 976
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEAT-NCKPSPHIFC 119
+ ++E+K+ G PDVV Y ++IN + R +EA+ LF EM+ + P + +
Sbjct: 977 VDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYN 1036
Query: 120 TLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179
+LI LG + EA + + + ++ G EP T+NA++ Y S + AY + M
Sbjct: 1037 SLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTG 1096
Query: 180 GIGPNTRTYD 189
G PNT TY+
Sbjct: 1097 GFSPNTGTYE 1106
Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 115/251 (45%), Gaps = 2/251 (0%)
Query: 72 KDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRL 131
KD G +P + +Y ++I A + A ++F ++++T C P + L++ G ++
Sbjct: 777 KDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKI 836
Query: 132 SEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMM-DEMRKCGIGPNTRTYDI 190
E + + + E T+N V+ + ++DA + D M P TY
Sbjct: 837 DELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGP 896
Query: 191 VLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR 250
++ L K+GR EA +F+ M G P + Y I++ F + D A ++ M
Sbjct: 897 LIDGLSKSGRLYEAKQLFEGM-LDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKE 955
Query: 251 GVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETA 310
GV P + YS L++ LC ++D+ YF+E+ + G+ P ++ + L E A
Sbjct: 956 GVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEA 1015
Query: 311 VVLAQKIDKLR 321
+VL ++ R
Sbjct: 1016 LVLFNEMKTSR 1026
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 141/343 (41%), Gaps = 47/343 (13%)
Query: 10 LPD---FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEG------------ 54
+PD +N +I L K+ V+ A F +MKK + PD + LL G
Sbjct: 640 VPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVY-PDFVTLCTLLPGVVKASLIEDAYK 698
Query: 55 ---------WGQQKNLLSMNEVYREMKDDG------FEPDVVSYGI----------MINA 89
Q NL + + + + G F +V+ GI +I
Sbjct: 699 IITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRY 758
Query: 90 HCSAKRYDEAVELFREM-EATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEP 148
C A LF + + +P + LI GL + A F Q K G P
Sbjct: 759 SCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIP 818
Query: 149 EAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVF 208
+ TYN ++ AY S +I++ + + EM NT T++IV+ L+KAG ++A ++
Sbjct: 819 DVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLY 878
Query: 209 KRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCH 268
+ PT TY ++ + ++ A ++++ M G P +Y+ LIN
Sbjct: 879 YDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGK 938
Query: 269 EDKLDDACKYFQEMLDIGIRPPGQLFSNLKQAL-----RDEGM 306
+ D AC F+ M+ G+RP + +S L L DEG+
Sbjct: 939 AGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGL 981
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 1/181 (0%)
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
++ L + +L E F +KR + + TY + + + A + +MR+ G
Sbjct: 124 MLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFG 183
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
N +Y+ ++H L+K+ EA V++RM + G P++ TY ++ +D
Sbjct: 184 FVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILE-GFRPSLQTYSSLMVGLGKRRDIDSV 242
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
M + EM+ G+ P ++ ++ I L K+++A + + M D G P ++ L A
Sbjct: 243 MGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDA 302
Query: 301 L 301
L
Sbjct: 303 L 303
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRR-FDPDIKSYTILLEGWGQQKNLLS 63
GL ++ +N +I+ L KS +E A +F++MK R PD+ +Y L+ G +
Sbjct: 991 GLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEE 1050
Query: 64 MNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLIN 123
++Y E++ G EP+V ++ +I + + + + A +++ M P+ + L N
Sbjct: 1051 AGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQLPN 1110
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 170 bits (430), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/341 (28%), Positives = 170/341 (49%), Gaps = 17/341 (4%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G + + +N +ID +CK VE A+ +F++MK R PD +Y +++G+G+ L
Sbjct: 257 GARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDT 316
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
+ EMKD EPDV++Y +IN C + +E +REM+ KP+ + TL++
Sbjct: 317 VCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDA 376
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
E + +A++F+ ++ G P TY +++ A C ++DA+R+ +EM + G+ N
Sbjct: 377 FCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWN 436
Query: 185 TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244
TY ++ L A R +EA +F +M G P +++Y ++ F +D A+ +
Sbjct: 437 VVTYTALIDGLCDAERMKEAEELFGKMD-TAGVIPNLASYNALIHGFVKAKNMDRALELL 495
Query: 245 DEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDE 304
+E+K RG+ P + +Y T I LC +K++ A EM + GI+ +++ L A
Sbjct: 496 NELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKS 555
Query: 305 G----------------MEETAVVLAQKIDKLRKTPLVDRG 329
G +E T V ID L K LV +
Sbjct: 556 GNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKA 596
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 128/277 (46%), Gaps = 1/277 (0%)
Query: 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMK 72
F+ L L +E A + F KMK+ R P +S LL + + + +++M
Sbjct: 195 FDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMI 254
Query: 73 DDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132
G P V +Y IMI+ C + A LF EM+ P + ++I+G G RL
Sbjct: 255 GAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLD 314
Query: 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVL 192
+ + FF + K EP+ TYNA++ +C ++ EM+ G+ PN +Y ++
Sbjct: 315 DTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLV 374
Query: 193 HHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV 252
K G ++A + M R+ G P TY ++ C + A R+ +EM GV
Sbjct: 375 DAFCKEGMMQQAIKFYVDM-RRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGV 433
Query: 253 LPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP 289
+ Y+ LI+ LC +++ +A + F +M G+ P
Sbjct: 434 EWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIP 470
Score = 114 bits (285), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 81/355 (22%), Positives = 147/355 (41%), Gaps = 70/355 (19%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
GLK + ++ L+D CK +++A + + M++ P+ +YT L++ + NL
Sbjct: 362 GLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDA 421
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
+ EM G E +VV+Y +I+ C A+R EA ELF +M+ P+ + LI+G
Sbjct: 422 FRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHG 481
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
K + AL+ + K RG +P+ Y + C +I A +M+EM++CGI N
Sbjct: 482 FVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKAN 541
Query: 185 TRTYDIVLHHLIKAGRTEE-----------------------------------AYSVFK 209
+ Y ++ K+G E A F
Sbjct: 542 SLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFN 601
Query: 210 RMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPV-------------- 255
R+S G + + + ++ C + QV+ A ++++M +G++P
Sbjct: 602 RISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQ 661
Query: 256 ---------------------MHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP 289
+ Y++L+ L H ++L A + +EM+ GI P
Sbjct: 662 GNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHP 716
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 145/301 (48%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M + GL + LID CK ++ A + ++M + + ++ +YT L++G +
Sbjct: 393 MRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAER 452
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ E++ +M G P++ SY +I+ AK D A+EL E++ KP ++ T
Sbjct: 453 MKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGT 512
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
I GL S +++ A + K+ G + + Y ++ AY S + ++DEM++
Sbjct: 513 FIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELD 572
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
I T+ +++ L K +A F R+S G + + + ++ C + QV+ A
Sbjct: 573 IEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAA 632
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
++++M +G++P Y++L++ + + +A +M +IG++ +++L
Sbjct: 633 TTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWG 692
Query: 301 L 301
L
Sbjct: 693 L 693
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 117/281 (41%), Gaps = 51/281 (18%)
Query: 70 EMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATN---------------CKPS 114
M +GF+ V SY I+ + A+ Y +A + +EM + C P
Sbjct: 132 SMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLSKADCDVFDVLWSTRNVCVPG 191
Query: 115 PHIFCTLINGLGSEKRLSEALQFFGQSKK------------------------------- 143
+F L + L L EA+Q F + K+
Sbjct: 192 FGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFK 251
Query: 144 ----RGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAG 199
G P TYN ++ C + A + +EM+ G+ P+T TY+ ++ K G
Sbjct: 252 DMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVG 311
Query: 200 RTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMY 259
R ++ F+ M + EP V TY ++ FC ++ + + + EMK G+ P + Y
Sbjct: 312 RLDDTVCFFEEM-KDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSY 370
Query: 260 STLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
STL+++ C E + A K++ +M +G+ P +++L A
Sbjct: 371 STLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDA 411
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%)
Query: 2 DKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNL 61
+ FGL+ F +ID LCK VE A +F++M ++ PD +YT L++G +Q N+
Sbjct: 605 NDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNV 664
Query: 62 LSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKP 113
L + +M + G + D+++Y ++ + +A EM P
Sbjct: 665 LEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHP 716
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 89/205 (43%), Gaps = 1/205 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M + G+K + L+D KS + + D+MK+ + + ++ +L++G + K
Sbjct: 533 MKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKL 592
Query: 61 LLSMNEVYREMKDD-GFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFC 119
+ + + + +D G + + + MI+ C + + A LF +M P +
Sbjct: 593 VSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYT 652
Query: 120 TLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179
+L++G + + EAL + + G + + Y ++V ++ A ++EM
Sbjct: 653 SLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGE 712
Query: 180 GIGPNTRTYDIVLHHLIKAGRTEEA 204
GI P+ VL + G +EA
Sbjct: 713 GIHPDEVLCISVLKKHYELGCIDEA 737
>sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470,
mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2
SV=1
Length = 599
Score = 166 bits (419), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 170/316 (53%), Gaps = 2/316 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M K+ K + N L+D+L +++ + AQ +FDK+K+R F P++ +YT+LL GW + +N
Sbjct: 255 MKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKER-FTPNMMTYTVLLNGWCRVRN 313
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L+ ++ +M D G +PD+V++ +M+ +++ +A++LF M++ P+ +
Sbjct: 314 LIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTI 373
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
+I + + A+++F G +P+A Y ++ + +++ Y ++ EM++ G
Sbjct: 374 MIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKG 433
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
P+ +TY+ ++ + E A ++ +M + EP++ T+ ++++ + +M
Sbjct: 434 HPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNE-IEPSIHTFNMIMKSYFMARNYEMG 492
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+W+EM +G+ P + Y+ LI L E K +AC+Y +EMLD G++ P ++
Sbjct: 493 RAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPLIDYNKFAAD 552
Query: 301 LRDEGMEETAVVLAQK 316
G E LAQ+
Sbjct: 553 FHRGGQPEIFEELAQR 568
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 147/304 (48%), Gaps = 5/304 (1%)
Query: 16 LIDTLCKSRHVERAQEVFD--KMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKD 73
+++ L + RH + F +++ F D ++Y ++ + + +M V EM
Sbjct: 164 IVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGT 223
Query: 74 DGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSE 133
G + ++ I + A +AK +AV +F M+ K L++ LG K E
Sbjct: 224 KGL-LTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKE 282
Query: 134 ALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLH 193
A F + K+R F P TY ++ +C + +A R+ ++M G+ P+ ++++L
Sbjct: 283 AQVLFDKLKER-FTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLE 341
Query: 194 HLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL 253
L+++ + +A +F M K G P V +Y I++R FC + ++ A+ +D+M G+
Sbjct: 342 GLLRSRKKSDAIKLFHVMKSK-GPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQ 400
Query: 254 PVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVL 313
P +Y+ LI + KLD + +EM + G P G+ ++ L + + ++ M E A +
Sbjct: 401 PDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRI 460
Query: 314 AQKI 317
K+
Sbjct: 461 YNKM 464
>sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820,
mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2
SV=1
Length = 598
Score = 165 bits (417), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 168/316 (53%), Gaps = 2/316 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M K+ K + N L+D+L +++ + AQ +FDK+K+R F P++ +YT+LL GW + +N
Sbjct: 254 MKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKER-FTPNMMTYTVLLNGWCRVRN 312
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L+ ++ +M D G +PD+V++ +M+ + + +A++LF M++ P+ +
Sbjct: 313 LIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTI 372
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
+I + + A+++F G +P+A Y ++ + +++ Y ++ EM++ G
Sbjct: 373 MIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKG 432
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
P+ +TY+ ++ + E ++ +M + EP++ T+ ++++ + +M
Sbjct: 433 HPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNE-IEPSIHTFNMIMKSYFVARNYEMG 491
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+WDEM +G+ P + Y+ LI L E K +AC+Y +EMLD G++ P ++
Sbjct: 492 RAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKFAAD 551
Query: 301 LRDEGMEETAVVLAQK 316
G E LAQ+
Sbjct: 552 FHRGGQPEIFEELAQR 567
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 146/304 (48%), Gaps = 5/304 (1%)
Query: 16 LIDTLCKSRHVERAQEVFD--KMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKD 73
+++ L + RH + F +++ F D ++Y ++ + + +M V EM
Sbjct: 163 IVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGT 222
Query: 74 DGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSE 133
G + ++ I + A +AK +AV +F M+ K L++ LG K E
Sbjct: 223 KGL-LTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKE 281
Query: 134 ALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLH 193
A F + K+R F P TY ++ +C + +A R+ ++M G+ P+ ++++L
Sbjct: 282 AQVLFDKLKER-FTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLE 340
Query: 194 HLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL 253
L+++ + +A +F M K G P V +Y I++R FC + ++ A+ +D+M G+
Sbjct: 341 GLLRSMKKSDAIKLFHVMKSK-GPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQ 399
Query: 254 PVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVL 313
P +Y+ LI + KLD + +EM + G P G+ ++ L + + ++ M E +
Sbjct: 400 PDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRI 459
Query: 314 AQKI 317
K+
Sbjct: 460 YNKM 463
>sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540,
mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2
SV=1
Length = 599
Score = 165 bits (417), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 168/316 (53%), Gaps = 2/316 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M K+ K + N L+D+L +++ + AQ +FDK+K+R F P++ +YT+LL GW + +N
Sbjct: 255 MKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKER-FTPNMMTYTVLLNGWCRVRN 313
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L+ ++ +M D G +PD+V++ +M+ + + +A++LF M++ P+ +
Sbjct: 314 LIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTI 373
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
+I + + A+++F G +P+A Y ++ + +++ Y ++ EM++ G
Sbjct: 374 MIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKG 433
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
P+ +TY+ ++ + E ++ +M + EP++ T+ ++++ + +M
Sbjct: 434 HPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNE-IEPSIHTFNMIMKSYFVARNYEMG 492
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+WDEM +G+ P + Y+ LI L E K +AC+Y +EMLD G++ P ++
Sbjct: 493 RAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKFAAD 552
Query: 301 LRDEGMEETAVVLAQK 316
G E LAQ+
Sbjct: 553 FHRGGQPEIFEELAQR 568
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 145/304 (47%), Gaps = 5/304 (1%)
Query: 16 LIDTLCKSRHVERAQEVFD--KMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKD 73
+++ L + RH + F +++ F ++Y ++ + + +M V EM
Sbjct: 164 IVEVLERFRHARKPAFRFFCWAAERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMGT 223
Query: 74 DGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSE 133
G + ++ I + A +AK +AV +F M+ K L++ LG K E
Sbjct: 224 KGL-LTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKE 282
Query: 134 ALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLH 193
A F + K+R F P TY ++ +C + +A R+ ++M G+ P+ ++++L
Sbjct: 283 AQVLFDKLKER-FTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLE 341
Query: 194 HLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL 253
L+++ + +A +F M K G P V +Y I++R FC + ++ A+ +D+M G+
Sbjct: 342 GLLRSMKKSDAIKLFHVMKSK-GPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQ 400
Query: 254 PVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVL 313
P +Y+ LI + KLD + +EM + G P G+ ++ L + + ++ M E +
Sbjct: 401 PDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRI 460
Query: 314 AQKI 317
K+
Sbjct: 461 YNKM 464
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 165 bits (417), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 168/324 (51%), Gaps = 1/324 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
+D+ + ++ +N ++ +LC S +++A EV D+M +R PD+ +YTIL+E +
Sbjct: 195 LDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSG 254
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ ++ EM+D G PDVV+Y +++N C R DEA++ +M ++ C+P+
Sbjct: 255 VGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNI 314
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
++ + S R +A + ++GF P T+N ++ C + A ++++M + G
Sbjct: 315 ILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHG 374
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
PN+ +Y+ +LH K + + A +RM + G P + TY ++ C + +V+ A
Sbjct: 375 CQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSR-GCYPDIVTYNTMLTALCKDGKVEDA 433
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+ I +++ ++G PV+ Y+T+I+ L K A K EM ++P +S+L
Sbjct: 434 VEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGG 493
Query: 301 LRDEGMEETAVVLAQKIDKLRKTP 324
L EG + A+ + +++ P
Sbjct: 494 LSREGKVDEAIKFFHEFERMGIRP 517
Score = 138 bits (347), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 154/323 (47%), Gaps = 13/323 (4%)
Query: 10 LPDF---NRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGW---GQQKNLLS 63
+PD LI C+ +A ++ + ++ PD+ +Y +++ G+ G+ N LS
Sbjct: 134 VPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALS 193
Query: 64 MNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLIN 123
+ + PDVV+Y ++ + C + + +A+E+ M +C P + LI
Sbjct: 194 V------LDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIE 247
Query: 124 GLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGP 183
+ + A++ + + RG P+ TYN +V C R+++A + +++M G P
Sbjct: 248 ATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQP 307
Query: 184 NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRI 243
N T++I+L + GR +A + M RK G P+V T+ I++ C + A+ I
Sbjct: 308 NVITHNIILRSMCSTGRWMDAEKLLADMLRK-GFSPSVVTFNILINFLCRKGLLGRAIDI 366
Query: 244 WDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRD 303
++M G P Y+ L++ C E K+D A +Y + M+ G P ++ + AL
Sbjct: 367 LEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCK 426
Query: 304 EGMEETAVVLAQKIDKLRKTPLV 326
+G E AV + ++ +P++
Sbjct: 427 DGKVEDAVEILNQLSSKGCSPVL 449
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 153/313 (48%), Gaps = 1/313 (0%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G ++ +N L++ +CK ++ A + + M P++ ++ I+L +
Sbjct: 269 GCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDA 328
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
++ +M GF P VV++ I+IN C A+++ +M C+P+ + L++G
Sbjct: 329 EKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHG 388
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
EK++ A+++ + RG P+ TYN ++ A C ++ DA +++++ G P
Sbjct: 389 FCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPV 448
Query: 185 TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244
TY+ V+ L KAG+T +A + M R +P TY +V +VD A++ +
Sbjct: 449 LITYNTVIDGLAKAGKTGKAIKLLDEM-RAKDLKPDTITYSSLVGGLSREGKVDEAIKFF 507
Query: 245 DEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDE 304
E + G+ P +++++ LC + D A + M++ G +P ++ L + L E
Sbjct: 508 HEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYE 567
Query: 305 GMEETAVVLAQKI 317
GM + A+ L ++
Sbjct: 568 GMAKEALELLNEL 580
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 129/253 (50%), Gaps = 1/253 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M + G + FN LI+ LC+ + RA ++ +KM + P+ SY LL G+ ++K
Sbjct: 335 MLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKK 394
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ E M G PD+V+Y M+ A C + ++AVE+ ++ + C P + T
Sbjct: 395 MDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNT 454
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
+I+GL + +A++ + + + +P+ TY+++VG ++++A + E + G
Sbjct: 455 VIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMG 514
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
I PN T++ ++ L K+ +T+ A M + G +P ++Y I++ Y A
Sbjct: 515 IRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINR-GCKPNETSYTILIEGLAYEGMAKEA 573
Query: 241 MRIWDEMKARGVL 253
+ + +E+ +G++
Sbjct: 574 LELLNELCNKGLM 586
>sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640,
mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2
SV=1
Length = 523
Score = 164 bits (414), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 161/320 (50%), Gaps = 2/320 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M +FG+K + D ++L+ +LC +HV AQE F K K P K+Y+IL+ GW + ++
Sbjct: 164 MVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPSAKTYSILVRGWARIRD 223
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+V+ EM + D+++Y +++A C + D ++F+EM KP + F
Sbjct: 224 ASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAI 283
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
I+ + A + + K+ P T+N ++ C + +++DAY ++DEM + G
Sbjct: 284 FIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKG 343
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
P+T TY+ ++ + A + RM R P TY +V+++ + D A
Sbjct: 344 ANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCL-PDRHTYNMVLKLLIRIGRFDRA 402
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHED-KLDDACKYFQEMLDIGIRPPGQLFSNLKQ 299
IW+ M R P + Y+ +I+ L + KL++AC+YF+ M+D GI P L+
Sbjct: 403 TEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIPPYSTTVEMLRN 462
Query: 300 ALRDEGMEETAVVLAQKIDK 319
L G + VLA K+++
Sbjct: 463 RLVGWGQMDVVDVLAGKMER 482
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 131/285 (45%), Gaps = 2/285 (0%)
Query: 41 FDPDIKSYTILLEGWGQQKNLLSMNEVYREMKD-DGFEPDVVSYGIMINAHCSAKRYDEA 99
F ++SY IL+E G K + + E ++ + FE + I+ A+ A EA
Sbjct: 98 FAHSLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRANLPSEA 157
Query: 100 VELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGA 159
F M KP L++ L +K ++ A +FFG++K G P A TY+ +V
Sbjct: 158 CRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPSAKTYSILVRG 217
Query: 160 YCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEP 219
+ + A ++ DEM + + Y+ +L L K+G + Y +F+ M G +P
Sbjct: 218 WARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMG-NLGLKP 276
Query: 220 TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYF 279
++ I + +C V A ++ D MK ++P ++ ++ +I +LC +K+DDA
Sbjct: 277 DAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLL 336
Query: 280 QEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTP 324
EM+ G P ++++ D A L ++D+ + P
Sbjct: 337 DEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLP 381
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 5/207 (2%)
Query: 121 LINGLGSEKRLSEALQFFGQSKKRG-FEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179
L+ LGS K+ + F ++++ FE + + V AY + ++A R + M +
Sbjct: 108 LVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRANLPSEACRAFNRMVEF 167
Query: 180 GIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDM 239
GI P D +LH L A F + ++ G P+ TY I+VR +
Sbjct: 168 GIKPCVDDLDQLLHSLCDKKHVNHAQEFFGK-AKGFGIVPSAKTYSILVRGWARIRDASG 226
Query: 240 AMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQ 299
A +++DEM R + + Y+ L+++LC +D K FQEM ++G++P F+
Sbjct: 227 ARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAIFIH 286
Query: 300 ALRDEGMEETAVVLAQKIDKLRKTPLV 326
A D G +A + +D++++ LV
Sbjct: 287 AYCDAGDVHSAY---KVLDRMKRYDLV 310
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 161 bits (408), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 149/291 (51%), Gaps = 4/291 (1%)
Query: 10 LPD---FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNE 66
LPD + LID CK + A + F +M R PD+ +YT ++ G+ Q +++ +
Sbjct: 348 LPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGK 407
Query: 67 VYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLG 126
++ EM G EPD V++ +IN +C A +A + M C P+ + TLI+GL
Sbjct: 408 LFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLC 467
Query: 127 SEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTR 186
E L A + + K G +P TYN++V C S I +A +++ E G+ +T
Sbjct: 468 KEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTV 527
Query: 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDE 246
TY ++ K+G ++A + K M K G +PT+ T+ +++ FC + ++ ++ +
Sbjct: 528 TYTTLMDAYCKSGEMDKAQEILKEMLGK-GLQPTIVTFNVLMNGFCLHGMLEDGEKLLNW 586
Query: 247 MKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNL 297
M A+G+ P +++L+ C + L A +++M G+ P G+ + NL
Sbjct: 587 MLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENL 637
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 147/313 (46%), Gaps = 3/313 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M + GLK + +I LC+ + A+E F +M ++ PD YT L++G+ ++ +
Sbjct: 307 MKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGD 366
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ + ++ + EM PDV++Y +I+ C EA +LF EM +P F
Sbjct: 367 IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTE 426
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LING + +A + + G P TY ++ C ++ A ++ EM K G
Sbjct: 427 LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 486
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+ PN TY+ +++ L K+G EEA + G TY ++ +C + ++D A
Sbjct: 487 LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF-EAAGLNADTVTYTTLMDAYCKSGEMDKA 545
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNL--K 298
I EM +G+ P + ++ L+N C L+D K ML GI P F++L +
Sbjct: 546 QEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQ 605
Query: 299 QALRDEGMEETAV 311
+R+ TA+
Sbjct: 606 YCIRNNLKAATAI 618
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 153/323 (47%), Gaps = 4/323 (1%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
GL+ + F LI+ CK+ H++ A V + M + P++ +YT L++G ++ +L S
Sbjct: 416 GLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSA 475
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
NE+ EM G +P++ +Y ++N C + +EAV+L E EA + TL++
Sbjct: 476 NELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDA 535
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
+ +A + + +G +P T+N ++ +C + D ++++ M GI PN
Sbjct: 536 YCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPN 595
Query: 185 TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244
T++ ++ + A +++K M + G P TYE +V+ C + A ++
Sbjct: 596 ATTFNSLVKQYCIRNNLKAATAIYKDMCSR-GVGPDGKTYENLVKGHCKARNMKEAWFLF 654
Query: 245 DEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDE 304
EMK +G + YS LI K +A + F +M G+ ++F + +
Sbjct: 655 QEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDT-KYK 713
Query: 305 GMEETAVVLAQKIDKLRKTPLVD 327
G +V ID++ + LVD
Sbjct: 714 GKRPDTIV--DPIDEIIENYLVD 734
Score = 128 bits (321), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 78/316 (24%), Positives = 149/316 (47%), Gaps = 2/316 (0%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G+ + +N +I +C+ ++ A + M+ + + PD+ SY+ ++ G+ + L +
Sbjct: 241 GVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKV 300
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
++ MK G +P+ YG +I C + EA E F EM P ++ TLI+G
Sbjct: 301 WKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDG 360
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
+ A +FF + R P+ TY A++ +C + +A ++ EM G+ P+
Sbjct: 361 FCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPD 420
Query: 185 TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244
+ T+ +++ KAG ++A+ V M + G P V TY ++ C +D A +
Sbjct: 421 SVTFTELINGYCKAGHMKDAFRVHNHMI-QAGCSPNVVTYTTLIDGLCKEGDLDSANELL 479
Query: 245 DEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDE 304
EM G+ P + Y++++N LC +++A K E G+ ++ L A
Sbjct: 480 HEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKS 539
Query: 305 G-MEETAVVLAQKIDK 319
G M++ +L + + K
Sbjct: 540 GEMDKAQEILKEMLGK 555
Score = 118 bits (295), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 125/252 (49%), Gaps = 1/252 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M + G + + LID LCK ++ A E+ +M K P+I +Y ++ G + N
Sbjct: 447 MIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN 506
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ ++ E + G D V+Y +++A+C + D+A E+ +EM +P+ F
Sbjct: 507 IEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNV 566
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
L+NG L + + +G P A T+N++V YC + A + +M G
Sbjct: 567 LMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRG 626
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+GP+ +TY+ ++ KA +EA+ +F+ M K G +VSTY ++++ F + A
Sbjct: 627 VGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGK-GFSVSVSTYSVLIKGFLKRKKFLEA 685
Query: 241 MRIWDEMKARGV 252
++D+M+ G+
Sbjct: 686 REVFDQMRREGL 697
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 114/258 (44%), Gaps = 1/258 (0%)
Query: 67 VYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLG 126
V+RE + G +V SY I+I+ C R EA L ME P + T++NG
Sbjct: 233 VFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYC 292
Query: 127 SEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTR 186
L + + K++G +P + Y +++G C ++ +A EM + GI P+T
Sbjct: 293 RFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTV 352
Query: 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDE 246
Y ++ K G A F M + T P V TY ++ FC + A +++ E
Sbjct: 353 VYTTLIDGFCKRGDIRAASKFFYEMHSRDIT-PDVLTYTAIISGFCQIGDMVEAGKLFHE 411
Query: 247 MKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGM 306
M +G+ P ++ LIN C + DA + M+ G P ++ L L EG
Sbjct: 412 MFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGD 471
Query: 307 EETAVVLAQKIDKLRKTP 324
++A L ++ K+ P
Sbjct: 472 LDSANELLHEMWKIGLQP 489
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 160/315 (50%), Gaps = 4/315 (1%)
Query: 2 DKFGLKQELPD---FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQ 58
DK K LP+ +N LID CK R ++ ++ M + +P++ SY +++ G ++
Sbjct: 229 DKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCRE 288
Query: 59 KNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIF 118
+ ++ V EM G+ D V+Y +I +C + +A+ + EM PS +
Sbjct: 289 GRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITY 348
Query: 119 CTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRK 178
+LI+ + ++ A++F Q + RG P TY +V + +N+AYR++ EM
Sbjct: 349 TSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMND 408
Query: 179 CGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVD 238
G P+ TY+ +++ G+ E+A +V + M K G P V +Y V+ FC + VD
Sbjct: 409 NGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEK-GLSPDVVSYSTVLSGFCRSYDVD 467
Query: 239 MAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLK 298
A+R+ EM +G+ P YS+LI C + + +AC ++EML +G+ P ++ L
Sbjct: 468 EALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALI 527
Query: 299 QALRDEGMEETAVVL 313
A EG E A+ L
Sbjct: 528 NAYCMEGDLEKALQL 542
Score = 150 bits (380), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 149/289 (51%), Gaps = 1/289 (0%)
Query: 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMK 72
+N LI C + +++ A +FDKM+ + P++ +Y L++G+ + + + ++ R M
Sbjct: 208 YNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMA 267
Query: 73 DDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132
G EP+++SY ++IN C R E + EM + TLI G E
Sbjct: 268 LKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFH 327
Query: 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVL 192
+AL + + G P TY +++ + C + +N A +D+MR G+ PN RTY ++
Sbjct: 328 QALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLV 387
Query: 193 HHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV 252
+ G EAY V + M+ G P+V TY ++ C +++ A+ + ++MK +G+
Sbjct: 388 DGFSQKGYMNEAYRVLREMNDN-GFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGL 446
Query: 253 LPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQAL 301
P + YST+++ C +D+A + +EM++ GI+P +S+L Q
Sbjct: 447 SPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGF 495
Score = 149 bits (376), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 156/313 (49%), Gaps = 1/313 (0%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
GL+ L +N +I+ LC+ ++ V +M +R + D +Y L++G+ ++ N
Sbjct: 270 GLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQA 329
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
++ EM G P V++Y +I++ C A + A+E +M P+ + TL++G
Sbjct: 330 LVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDG 389
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
+ ++EA + + GF P TYNA++ +C + ++ DA ++++M++ G+ P+
Sbjct: 390 FSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPD 449
Query: 185 TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244
+Y VL ++ +EA V + M K G +P TY +++ FC + A ++
Sbjct: 450 VVSYSTVLSGFCRSYDVDEALRVKREMVEK-GIKPDTITYSSLIQGFCEQRRTKEACDLY 508
Query: 245 DEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDE 304
+EM G+ P Y+ LIN+ C E L+ A + EM++ G+ P +S L L +
Sbjct: 509 EEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQ 568
Query: 305 GMEETAVVLAQKI 317
A L K+
Sbjct: 569 SRTREAKRLLLKL 581
Score = 138 bits (347), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 140/275 (50%), Gaps = 36/275 (13%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M + GL + + LI ++CK+ ++ RA E D+M+ R P+ ++YT L++G+ Q+
Sbjct: 336 MLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGY 395
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ V REM D+GF P VV+Y +IN HC + ++A+ + +M+
Sbjct: 396 MNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMK------------- 442
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
EK LS P+ +Y+ V+ +C S +++A R+ EM + G
Sbjct: 443 -------EKGLS---------------PDVVSYSTVLSGFCRSYDVDEALRVKREMVEKG 480
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
I P+T TY ++ + RT+EA +++ M R G P TY ++ +C ++ A
Sbjct: 481 IKPDTITYSSLIQGFCEQRRTKEACDLYEEMLR-VGLPPDEFTYTALINAYCMEGDLEKA 539
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDA 275
+++ +EM +GVLP + YS LIN L + + +A
Sbjct: 540 LQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREA 574
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 122/246 (49%), Gaps = 3/246 (1%)
Query: 75 GFEPDVVSYGIMINAHCSAKRYDEAVE-LFREMEATNCKPSPHIFCTLINGLGSEKRLSE 133
GF P V+SY +++A +KR E +F+EM + P+ + LI G +
Sbjct: 164 GFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDV 223
Query: 134 ALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLH 193
AL F + + +G P TYN ++ YC +I+D ++++ M G+ PN +Y++V++
Sbjct: 224 ALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVIN 283
Query: 194 HLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL 253
L + GR +E V M+R+ G TY +++ +C A+ + EM G+
Sbjct: 284 GLCREGRMKEVSFVLTEMNRR-GYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLT 342
Query: 254 PVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG-MEETAVV 312
P + Y++LI+S+C ++ A ++ +M G+ P + ++ L +G M E V
Sbjct: 343 PSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRV 402
Query: 313 LAQKID 318
L + D
Sbjct: 403 LREMND 408
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 116/265 (43%), Gaps = 16/265 (6%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G+K + ++ LI C+ R + A +++++M + PD +YT L+ + + +L
Sbjct: 480 GIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKA 539
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLI-- 122
+++ EM + G PDVV+Y ++IN R EA L ++ PS + TLI
Sbjct: 540 LQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIEN 599
Query: 123 -------------NGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDA 169
G + ++EA Q F + +P+ YN ++ +C + I A
Sbjct: 600 CSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKA 659
Query: 170 YRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVR 229
Y + EM K G +T T ++ L K G+ E SV + R +++V
Sbjct: 660 YTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEA-EQAKVLVE 718
Query: 230 MFCYNAQVDMAMRIWDEMKARGVLP 254
+ +D+ + + EM G LP
Sbjct: 719 INHREGNMDVVLDVLAEMAKDGFLP 743
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 112/240 (46%), Gaps = 6/240 (2%)
Query: 92 SAKRYDE--AVELFREMEATN--CKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFE 147
+AK D+ A +F+ ++ T C + +F ++ + +AL ++ GF
Sbjct: 107 AAKTLDDEYASLVFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFM 166
Query: 148 PEAPTYNAVVGAYCWSMR-INDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYS 206
P +YNAV+ A S R I+ A + EM + + PN TY+I++ AG + A +
Sbjct: 167 PGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALT 226
Query: 207 VFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSL 266
+F +M K G P V TY ++ +C ++D ++ M +G+ P + Y+ +IN L
Sbjct: 227 LFDKMETK-GCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGL 285
Query: 267 CHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTPLV 326
C E ++ + EM G ++ L + EG A+V+ ++ + TP V
Sbjct: 286 CREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSV 345
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 151/285 (52%), Gaps = 4/285 (1%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M + G+K ++ + +ID+LCK+ HV A +FD+M+ PD+ YT L+ G
Sbjct: 168 MVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGR 227
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ + R M +PDV+++ +I+A ++ +A EL+ EM + P+ + +
Sbjct: 228 WRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTS 287
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LING E + EA Q F + +G P+ Y +++ +C +++DA ++ EM + G
Sbjct: 288 LINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKG 347
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+ NT TY ++ + G+ A VF M + G P + TY +++ CYN +V A
Sbjct: 348 LTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSR-GVPPNIRTYNVLLHCLCYNGKVKKA 406
Query: 241 MRIWDEMKAR---GVLPVMHMYSTLINSLCHEDKLDDACKYFQEM 282
+ I+++M+ R GV P + Y+ L++ LC+ KL+ A F++M
Sbjct: 407 LMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDM 451
Score = 157 bits (398), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 82/319 (25%), Positives = 164/319 (51%), Gaps = 2/319 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M+ +G++ ++ + L++ LC S A + M KR+ PD+ ++ L++ + ++
Sbjct: 203 MENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGK 262
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L E+Y EM P++ +Y +IN C DEA ++F ME C P + +
Sbjct: 263 FLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTS 322
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LING K++ +A++ F + ++G TY ++ + + N A + M G
Sbjct: 323 LINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRG 382
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKP--GTEPTVSTYEIVVRMFCYNAQVD 238
+ PN RTY+++LH L G+ ++A +F+ M ++ G P + TY +++ CYN +++
Sbjct: 383 VPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLE 442
Query: 239 MAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLK 298
A+ ++++M+ R + + Y+ +I +C K+ +A F + G++P ++ +
Sbjct: 443 KALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMI 502
Query: 299 QALRDEGMEETAVVLAQKI 317
L EG++ A VL +K+
Sbjct: 503 SGLFREGLKHEAHVLFRKM 521
Score = 142 bits (358), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 153/315 (48%), Gaps = 1/315 (0%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G+ +L N L++ C+S A KM K F+PDI ++T L+ G+ +
Sbjct: 102 GVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEA 161
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
+ +M + G +PDVV Y +I++ C + A+ LF +ME +P ++ +L+NG
Sbjct: 162 MSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNG 221
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
L + R +A KR +P+ T+NA++ A+ + DA + +EM + I PN
Sbjct: 222 LCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPN 281
Query: 185 TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244
TY +++ G +EA +F M K G P V Y ++ FC +VD AM+I+
Sbjct: 282 IFTYTSLINGFCMEGCVDEARQMFYLMETK-GCFPDVVAYTSLINGFCKCKKVDDAMKIF 340
Query: 245 DEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDE 304
EM +G+ Y+TLI K + A + F M+ G+ P + ++ L L
Sbjct: 341 YEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYN 400
Query: 305 GMEETAVVLAQKIDK 319
G + A+++ + + K
Sbjct: 401 GKVKKALMIFEDMQK 415
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 141/302 (46%), Gaps = 1/302 (0%)
Query: 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVY 68
+ DF +L++ + K + + + D ++ D+ + +L+ + Q +
Sbjct: 71 SIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFL 130
Query: 69 REMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSE 128
+M GFEPD+V++ +IN C R +EA+ + +M KP ++ T+I+ L
Sbjct: 131 GKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKN 190
Query: 129 KRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTY 188
++ AL F Q + G P+ Y ++V C S R DA ++ M K I P+ T+
Sbjct: 191 GHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITF 250
Query: 189 DIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMK 248
+ ++ +K G+ +A ++ M R P + TY ++ FC VD A +++ M+
Sbjct: 251 NALIDAFVKEGKFLDAEELYNEMIRMS-IAPNIFTYTSLINGFCMEGCVDEARQMFYLME 309
Query: 249 ARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEE 308
+G P + Y++LIN C K+DDA K F EM G+ ++ L Q G
Sbjct: 310 TKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPN 369
Query: 309 TA 310
A
Sbjct: 370 VA 371
Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 100/211 (47%), Gaps = 6/211 (2%)
Query: 118 FCT----LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMM 173
FC L NGL S + +EAL F + P + ++ + + +
Sbjct: 37 FCNYREILRNGLHS-LQFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLC 95
Query: 174 DEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCY 233
D ++ G+ + T +++++ ++ + A S +M K G EP + T+ ++ FC
Sbjct: 96 DHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKM-MKLGFEPDIVTFTSLINGFCL 154
Query: 234 NAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQL 293
+++ AM + ++M G+ P + MY+T+I+SLC ++ A F +M + GIRP +
Sbjct: 155 GNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVM 214
Query: 294 FSNLKQALRDEGMEETAVVLAQKIDKLRKTP 324
+++L L + G A L + + K + P
Sbjct: 215 YTSLVNGLCNSGRWRDADSLLRGMTKRKIKP 245
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 83/184 (45%), Gaps = 3/184 (1%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGW---GQ 57
M + GL + LI + AQEVF M R P+I++Y +LL G+
Sbjct: 343 MSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGK 402
Query: 58 QKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHI 117
K L + E ++ + DG P++ +Y ++++ C + ++A+ +F +M
Sbjct: 403 VKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIIT 462
Query: 118 FCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMR 177
+ +I G+ ++ A+ F +G +P TY ++ ++A+ + +M+
Sbjct: 463 YTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMK 522
Query: 178 KCGI 181
+ G+
Sbjct: 523 EDGV 526
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 147/278 (52%), Gaps = 1/278 (0%)
Query: 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMK 72
+N LI TLCK VE A E+ + + PD+ ++ L++G +N E++ EM+
Sbjct: 368 YNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMR 427
Query: 73 DDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132
G EPD +Y ++I++ CS + DEA+ + ++ME + C S + TLI+G +
Sbjct: 428 SKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTR 487
Query: 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVL 192
EA + F + + G + TYN ++ C S R+ DA ++MD+M G P+ TY+ +L
Sbjct: 488 EAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLL 547
Query: 193 HHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV 252
H + G ++A + + M+ G EP + TY ++ C +V++A ++ ++ +G+
Sbjct: 548 THFCRGGDIKKAADIVQAMTSN-GCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGI 606
Query: 253 LPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPP 290
H Y+ +I L + K +A F+EML+ PP
Sbjct: 607 NLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPP 644
Score = 141 bits (356), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 148/283 (52%), Gaps = 2/283 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M +G+K ++ FN LI LC++ + A + + M PD K++T +++G+ ++ +
Sbjct: 180 MSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGD 239
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNC-KPSPHIFC 119
L + +M + G VS ++++ C R ++A+ +EM + P + F
Sbjct: 240 LDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFN 299
Query: 120 TLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179
TL+NGL + A++ + G++P+ TYN+V+ C + +A ++D+M
Sbjct: 300 TLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITR 359
Query: 180 GIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDM 239
PNT TY+ ++ L K + EEA + + ++ K G P V T+ +++ C +
Sbjct: 360 DCSPNTVTYNTLISTLCKENQVEEATELARVLTSK-GILPDVCTFNSLIQGLCLTRNHRV 418
Query: 240 AMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEM 282
AM +++EM+++G P Y+ LI+SLC + KLD+A ++M
Sbjct: 419 AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQM 461
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 142/297 (47%), Gaps = 1/297 (0%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G ++ +N +I LCK V+ A EV D+M R P+ +Y L+ ++ +
Sbjct: 325 GYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEA 384
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
E+ R + G PDV ++ +I C + + A+ELF EM + C+P + LI+
Sbjct: 385 TELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDS 444
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
L S+ +L EAL Q + G TYN ++ +C + + +A + DEM G+ N
Sbjct: 445 LCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRN 504
Query: 185 TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244
+ TY+ ++ L K+ R E+A + +M + G +P TY ++ FC + A I
Sbjct: 505 SVTYNTLIDGLCKSRRVEDAAQLMDQMIME-GQKPDKYTYNSLLTHFCRGGDIKKAADIV 563
Query: 245 DEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQAL 301
M + G P + Y TLI+ LC +++ A K + + GI ++ + Q L
Sbjct: 564 QAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGL 620
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/311 (27%), Positives = 145/311 (46%), Gaps = 4/311 (1%)
Query: 10 LPD---FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNE 66
PD FN L++ LCK+ HV+ A E+ D M + +DPD+ +Y ++ G + + E
Sbjct: 292 FPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVE 351
Query: 67 VYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLG 126
V +M P+ V+Y +I+ C + +EA EL R + + P F +LI GL
Sbjct: 352 VLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLC 411
Query: 127 SEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTR 186
+ A++ F + + +G EP+ TYN ++ + C ++++A M+ +M G +
Sbjct: 412 LTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVI 471
Query: 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDE 246
TY+ ++ KA +T EA +F M G TY ++ C + +V+ A ++ D+
Sbjct: 472 TYNTLIDGFCKANKTREAEEIFDEMEVH-GVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQ 530
Query: 247 MKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGM 306
M G P + Y++L+ C + A Q M G P + L L G
Sbjct: 531 MIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGR 590
Query: 307 EETAVVLAQKI 317
E A L + I
Sbjct: 591 VEVASKLLRSI 601
Score = 135 bits (339), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 146/298 (48%), Gaps = 2/298 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRR-FDPDIKSYTILLEGWGQQK 59
M +FG N ++ CK VE A +M + F PD ++ L+ G +
Sbjct: 250 MVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAG 309
Query: 60 NLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFC 119
++ E+ M +G++PDV +Y +I+ C EAVE+ +M +C P+ +
Sbjct: 310 HVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYN 369
Query: 120 TLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179
TLI+ L E ++ EA + +G P+ T+N+++ C + A + +EMR
Sbjct: 370 TLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSK 429
Query: 180 GIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDM 239
G P+ TY++++ L G+ +EA ++ K+M G +V TY ++ FC +
Sbjct: 430 GCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELS-GCARSVITYNTLIDGFCKANKTRE 488
Query: 240 AMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNL 297
A I+DEM+ GV Y+TLI+ LC +++DA + +M+ G +P +++L
Sbjct: 489 AEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSL 546
Score = 97.8 bits (242), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 77/323 (23%), Positives = 137/323 (42%), Gaps = 14/323 (4%)
Query: 4 FGLKQELPDFN-------RLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWG 56
F L + P+F+ ++ L +S + +++ + MK R + ++ IL+E +
Sbjct: 70 FNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYA 129
Query: 57 Q---QKNLLSMNEVYREMKDD-GFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCK 112
Q Q +LS V M D+ G +PD Y M+N +M K
Sbjct: 130 QFELQDEILS---VVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIK 186
Query: 113 PSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRM 172
P F LI L +L A+ G P+ T+ V+ Y ++ A R+
Sbjct: 187 PDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRI 246
Query: 173 MDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFC 232
++M + G + + ++++H K GR E+A + + MS + G P T+ +V C
Sbjct: 247 REQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLC 306
Query: 233 YNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQ 292
V A+ I D M G P ++ Y+++I+ LC ++ +A + +M+ P
Sbjct: 307 KAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTV 366
Query: 293 LFSNLKQALRDEGMEETAVVLAQ 315
++ L L E E A LA+
Sbjct: 367 TYNTLISTLCKENQVEEATELAR 389
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 121/264 (45%), Gaps = 4/264 (1%)
Query: 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMK 72
+N LID+LC ++ A + +M+ + +Y L++G+ + E++ EM+
Sbjct: 438 YNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEME 497
Query: 73 DDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132
G + V+Y +I+ C ++R ++A +L +M KP + + +L+ +
Sbjct: 498 VHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIK 557
Query: 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVL 192
+A G EP+ TY ++ C + R+ A +++ ++ GI Y+ V+
Sbjct: 558 KAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVI 617
Query: 193 HHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCY-NAQVDMAMRIWDEMKARG 251
L + +T EA ++F+ M + P +Y IV R C + A+ E+ +G
Sbjct: 618 QGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKG 677
Query: 252 VLP---VMHMYSTLINSLCHEDKL 272
+P ++M + + +L E+ L
Sbjct: 678 FVPEFSSLYMLAEGLLTLSMEETL 701
Score = 91.3 bits (225), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 95/185 (51%), Gaps = 2/185 (1%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M+ G+ + +N LID LCKSR VE A ++ D+M PD +Y LL + + +
Sbjct: 496 MEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGD 555
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ ++ + M +G EPD+V+YG +I+ C A R + A +L R ++ +PH +
Sbjct: 556 IKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNP 615
Query: 121 LINGLGSEKRLSEALQFFGQSKKRG-FEPEAPTYNAVVGAYC-WSMRINDAYRMMDEMRK 178
+I GL +++ +EA+ F + ++ P+A +Y V C I +A + E+ +
Sbjct: 616 VIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLE 675
Query: 179 CGIGP 183
G P
Sbjct: 676 KGFVP 680
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 86/188 (45%), Gaps = 5/188 (2%)
Query: 121 LINGLGSEKRLSEALQFFG-QSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMR-- 177
L++ L S+ S AL+ F SKK F PE Y ++ S +D +++++M+
Sbjct: 53 LLDSLRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSS 112
Query: 178 KCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQV 237
+C +G T T+ I++ + +E SV M + G +P Y ++ + +
Sbjct: 113 RCEMG--TSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSL 170
Query: 238 DMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNL 297
+ +M G+ P + ++ LI +LC +L A ++M G+ P + F+ +
Sbjct: 171 KLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTV 230
Query: 298 KQALRDEG 305
Q +EG
Sbjct: 231 MQGYIEEG 238
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 153/278 (55%), Gaps = 7/278 (2%)
Query: 16 LIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDG 75
+++ +CKS A E+ KM++R D Y+I+++G + +L + ++ EM+ G
Sbjct: 234 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 293
Query: 76 FEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEAL 135
F+ D+++Y +I C+A R+D+ +L R+M P+ F LI+ E +L EA
Sbjct: 294 FKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREAD 353
Query: 136 QFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHL 195
Q + +RG P TYN+++ +C R+ +A +M+D M G P+ T++I+++
Sbjct: 354 QLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGY 413
Query: 196 IKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPV 255
KA R ++ +F+ MS + TV TY +V+ FC + ++++A +++ EM +R V P
Sbjct: 414 CKANRIDDGLELFREMSLRGVIANTV-TYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPD 472
Query: 256 MHMYSTLINSLCHEDKLDDACKYFQEM------LDIGI 287
+ Y L++ LC +L+ A + F ++ LDIGI
Sbjct: 473 IVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGI 510
Score = 155 bits (393), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 161/322 (50%), Gaps = 1/322 (0%)
Query: 3 KFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLL 62
K G + + FN L++ LC V A E+ D+M + P + + L+ G +
Sbjct: 151 KLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVS 210
Query: 63 SMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLI 122
+ M + GF+P+ V+YG ++N C + + A+EL R+ME N K + +I
Sbjct: 211 DAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIII 270
Query: 123 NGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIG 182
+GL + L A F + + +GF+ + TYN ++G +C + R +D +++ +M K I
Sbjct: 271 DGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKIS 330
Query: 183 PNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMR 242
PN T+ +++ +K G+ EA + K M ++ G P TY ++ FC +++ A++
Sbjct: 331 PNVVTFSVLIDSFVKEGKLREADQLLKEMMQR-GIAPNTITYNSLIDGFCKENRLEEAIQ 389
Query: 243 IWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALR 302
+ D M ++G P + ++ LIN C +++DD + F+EM G+ ++ L Q
Sbjct: 390 MVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFC 449
Query: 303 DEGMEETAVVLAQKIDKLRKTP 324
G E A L Q++ R P
Sbjct: 450 QSGKLEVAKKLFQEMVSRRVRP 471
Score = 141 bits (355), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 160/323 (49%), Gaps = 4/323 (1%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M+ G K ++ +N LI C + + ++ M KR+ P++ ++++L++ + ++
Sbjct: 289 MEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGK 348
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L +++ +EM G P+ ++Y +I+ C R +EA+++ M + C P F
Sbjct: 349 LREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNI 408
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LING R+ + L+ F + RG TYN +V +C S ++ A ++ EM
Sbjct: 409 LINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRR 468
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+ P+ +Y I+L L G E+A +F ++ K E + Y I++ C ++VD A
Sbjct: 469 VRPDIVSYKILLDGLCDNGELEKALEIFGKI-EKSKMELDIGIYMIIIHGMCNASKVDDA 527
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
++ + +GV Y+ +I+ LC +D L A F++M + G P +L N+
Sbjct: 528 WDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEG-HAPDELTYNI--L 584
Query: 301 LRDEGMEETAVVLAQKIDKLRKT 323
+R ++ A A+ I++++ +
Sbjct: 585 IRAHLGDDDATTAAELIEEMKSS 607
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 133/277 (48%), Gaps = 1/277 (0%)
Query: 29 AQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMIN 88
A ++F M + R P + + L + K + + ++M+ G + + IMIN
Sbjct: 72 AVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMIN 131
Query: 89 AHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEP 148
C ++ A ++ +P IF TL+NGL E R+SEAL+ + + G +P
Sbjct: 132 CFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKP 191
Query: 149 EAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVF 208
T N +V C + +++DA ++D M + G PN TY VL+ + K+G+T A +
Sbjct: 192 TLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELL 251
Query: 209 KRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCH 268
++M + V Y I++ C + +D A +++EM+ +G + Y+TLI C+
Sbjct: 252 RKMEERNIKLDAVK-YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCN 310
Query: 269 EDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 305
+ DD K ++M+ I P FS L + EG
Sbjct: 311 AGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEG 347
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 138/279 (49%), Gaps = 5/279 (1%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G+ +N LID CK +E A ++ D M + DPDI ++ IL+ G+ + +
Sbjct: 363 GIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDG 422
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
E++REM G + V+Y ++ C + + + A +LF+EM + +P + L++G
Sbjct: 423 LELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDG 482
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
L L +AL+ FG+ +K E + Y ++ C + +++DA+ + + G+ +
Sbjct: 483 LCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLD 542
Query: 185 TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244
R Y+I++ L + +A +F++M+ + G P TY I++R + A +
Sbjct: 543 ARAYNIMISELCRKDSLSKADILFRKMTEE-GHAPDELTYNILIRAHLGDDDATTAAELI 601
Query: 245 DEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEML 283
+EMK+ G + +IN L +LD K F +ML
Sbjct: 602 EEMKSSGFPADVSTVKMVINML-SSGELD---KSFLDML 636
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 124/261 (47%), Gaps = 1/261 (0%)
Query: 66 EVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGL 125
+++R+M P V+ + + +A K+Y+ + L ++ME+ S + +IN
Sbjct: 74 DLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCF 133
Query: 126 GSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNT 185
++LS A G+ K G+EP+ +N ++ C R+++A ++D M + G P
Sbjct: 134 CRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTL 193
Query: 186 RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWD 245
T + +++ L G+ +A + RM + G +P TY V+ + C + Q +AM +
Sbjct: 194 ITLNTLVNGLCLNGKVSDAVVLIDRMV-ETGFQPNEVTYGPVLNVMCKSGQTALAMELLR 252
Query: 246 EMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 305
+M+ R + YS +I+ LC + LD+A F EM G + ++ L + G
Sbjct: 253 KMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAG 312
Query: 306 MEETAVVLAQKIDKLRKTPLV 326
+ L + + K + +P V
Sbjct: 313 RWDDGAKLLRDMIKRKISPNV 333
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 156 bits (395), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 165/340 (48%), Gaps = 37/340 (10%)
Query: 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREM- 71
+N++++ CK +VE A + K+ + DPD +YT L+ G+ Q+K+L S +V+ EM
Sbjct: 221 YNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMP 280
Query: 72 ----------------------------------KDDGFEPDVVSYGIMINAHCSAKRYD 97
KDD P V +Y ++I + C ++R
Sbjct: 281 LKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKS 340
Query: 98 EAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVV 157
EA+ L +EME T KP+ H + LI+ L S+ + +A + GQ ++G P TYNA++
Sbjct: 341 EALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALI 400
Query: 158 GAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGT 217
YC I DA +++ M + PNTRTY+ ++ K+ +A V +M +
Sbjct: 401 NGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERK-V 458
Query: 218 EPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACK 277
P V TY ++ C + D A R+ M RG++P Y+++I+SLC ++++AC
Sbjct: 459 LPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACD 518
Query: 278 YFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKI 317
F + G+ P +++ L G + A ++ +K+
Sbjct: 519 LFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKM 558
Score = 141 bits (355), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 145/289 (50%), Gaps = 2/289 (0%)
Query: 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMK 72
+N LI CKS +V +A V +KM +R+ PD+ +Y L++G + N S + M
Sbjct: 431 YNELIKGYCKS-NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMN 489
Query: 73 DDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132
D G PD +Y MI++ C +KR +EA +LF +E P+ ++ LI+G ++
Sbjct: 490 DRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVD 549
Query: 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVL 192
EA + + P + T+NA++ C ++ +A + ++M K G+ P T I++
Sbjct: 550 EAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILI 609
Query: 193 HHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV 252
H L+K G + AYS F++M GT+P TY ++ +C ++ A + +M+ GV
Sbjct: 610 HRLLKDGDFDHAYSRFQQM-LSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGV 668
Query: 253 LPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQAL 301
P + YS+LI + + A + M D G P F +L + L
Sbjct: 669 SPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHL 717
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/344 (25%), Positives = 160/344 (46%), Gaps = 35/344 (10%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQ-- 58
M++ G+K + + LID+LC E+A+E+ +M ++ P++ +Y L+ G+ ++
Sbjct: 349 MEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGM 408
Query: 59 -----------------KNLLSMNE---------------VYREMKDDGFEPDVVSYGIM 86
N + NE V +M + PDVV+Y +
Sbjct: 409 IEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSL 468
Query: 87 INAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGF 146
I+ C + +D A L M P + ++I+ L KR+ EA F +++G
Sbjct: 469 IDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGV 528
Query: 147 EPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYS 206
P Y A++ YC + ++++A+ M+++M PN+ T++ ++H L G+ +EA
Sbjct: 529 NPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATL 588
Query: 207 VFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSL 266
+ ++M K G +PTVST I++ + D A + +M + G P H Y+T I +
Sbjct: 589 LEEKMV-KIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTY 647
Query: 267 CHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETA 310
C E +L DA +M + G+ P +S+L + D G A
Sbjct: 648 CREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFA 691
Score = 127 bits (320), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 77/298 (25%), Positives = 152/298 (51%), Gaps = 4/298 (1%)
Query: 2 DKFGLKQEL--PDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQK 59
++F LK +L +N L+++L + V+ ++V+ +M + + P+I +Y ++ G+ +
Sbjct: 173 ERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLG 232
Query: 60 NLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFC 119
N+ N+ ++ + G +PD +Y +I +C K D A ++F EM C+ + +
Sbjct: 233 NVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYT 292
Query: 120 TLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179
LI+GL +R+ EA+ F + K P TY ++ + C S R ++A ++ EM +
Sbjct: 293 HLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEET 352
Query: 180 GIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDM 239
GI PN TY +++ L + E+A + +M K G P V TY ++ +C ++
Sbjct: 353 GIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEK-GLMPNVITYNALINGYCKRGMIED 411
Query: 240 AMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNL 297
A+ + + M++R + P Y+ LI C + + A +ML+ + P +++L
Sbjct: 412 AVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSL 468
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/370 (21%), Positives = 160/370 (43%), Gaps = 53/370 (14%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQ-- 58
M+ GL + + +ID+LCKS+ VE A ++FD ++++ +P++ YT L++G+ +
Sbjct: 488 MNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGK 547
Query: 59 -----------------KNLLSMNEVYREMKDDG----------------FEPDVVSYGI 85
N L+ N + + DG +P V + I
Sbjct: 548 VDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTI 607
Query: 86 MINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRG 145
+I+ +D A F++M ++ KP H + T I E RL +A + ++ G
Sbjct: 608 LIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENG 667
Query: 146 FEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLI--KAGRTEE 203
P+ TY++++ Y + N A+ ++ MR G P+ T+ ++ HL+ K G+ +
Sbjct: 668 VSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKG 727
Query: 204 AYSVFKRMSR---------------KPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEM- 247
+ MS + P +YE ++ C + +A +++D M
Sbjct: 728 SEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQ 787
Query: 248 KARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGME 307
+ G+ P +++ L++ C K ++A K +M+ +G P + L L +G +
Sbjct: 788 RNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEK 847
Query: 308 ETAVVLAQKI 317
E + Q +
Sbjct: 848 ERGTSVFQNL 857
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 128/286 (44%), Gaps = 17/286 (5%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M K GL+ + LI L K + A F +M PD +YT ++ + ++
Sbjct: 593 MVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGR 652
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
LL ++ +M+++G PD+ +Y +I + + + A ++ + M T C+PS H F +
Sbjct: 653 LLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLS 712
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LI L K +G K++G EPE + A M + ++++M +
Sbjct: 713 LIKHLLEMK--------YG--KQKGSEPE-------LCAMSNMMEFDTVVELLEKMVEHS 755
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+ PN ++Y+ ++ + + G A VF M R G P+ + ++ C + + A
Sbjct: 756 VTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEA 815
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIG 286
++ D+M G LP + LI L + + + FQ +L G
Sbjct: 816 AKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCG 861
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%)
Query: 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMK 72
FN L+ CK + A +V D M P ++S +L+ G ++ V++ +
Sbjct: 799 FNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLL 858
Query: 73 DDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
G+ D +++ I+I+ + ELF ME CK S + LI G
Sbjct: 859 QCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIEG 910
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/163 (19%), Positives = 65/163 (39%), Gaps = 36/163 (22%)
Query: 31 EVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREM-KDDGFEPDVVSYGIMINA 89
E+ +KM + P+ KSY L+ G + NL +V+ M +++G P + + +++
Sbjct: 746 ELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSC 805
Query: 90 HCSAKRYDEAVELFREMEATNCKPSPH----IFCTL------------------------ 121
C K+++EA ++ +M P + C L
Sbjct: 806 CCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYED 865
Query: 122 -------INGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVV 157
I+G+G + + + F +K G + + TY+ ++
Sbjct: 866 ELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLI 908
>sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420,
mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2
SV=1
Length = 535
Score = 156 bits (395), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 157/324 (48%), Gaps = 8/324 (2%)
Query: 2 DKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNL 61
+ FG+ + N L+ LCK +E A +V D++ P++ +YT +L G+ + ++
Sbjct: 183 ESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDM 242
Query: 62 LSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTL 121
S V EM D G+ PD +Y ++++ +C R+ EA + +ME +P+ + +
Sbjct: 243 ESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVM 302
Query: 122 INGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGI 181
I L EK+ EA F + +R F P++ V+ A C ++++A + +M K
Sbjct: 303 IRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNC 362
Query: 182 GPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAM 241
P+ ++H L K GR EA +F + G+ P++ TY ++ C ++ A
Sbjct: 363 MPDNALLSTLIHWLCKEGRVTEARKLFDEFEK--GSIPSLLTYNTLIAGMCEKGELTEAG 420
Query: 242 RIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQAL 301
R+WD+M R P Y+ LI L + + + +EML+IG P F L + L
Sbjct: 421 RLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGL 480
Query: 302 RDEGMEETAV------VLAQKIDK 319
+ G EE A+ V+ K+DK
Sbjct: 481 QKLGKEEDAMKIVSMAVMNGKVDK 504
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 137/311 (44%), Gaps = 8/311 (2%)
Query: 15 RLIDTLCKSRHVERAQEVFDKMKKRR--FDPDIKSYTILLEGWGQQKNLLSMNEVYREMK 72
RL+ + + ++++ A ++F K F + +Y +L + + + + +++
Sbjct: 51 RLVSMITQQQNIDLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADLR 110
Query: 73 DDGFEPDVVSYGIMINA---HCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEK 129
+ + P + I+ + A RY+ ++ +F + K S TL+N L +
Sbjct: 111 N-SYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQ 169
Query: 130 RLSEALQFFGQSKKR-GFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTY 188
R F SK+ G P T N +V A C I AY+++DE+ G+ PN TY
Sbjct: 170 RFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTY 229
Query: 189 DIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMK 248
+L + G E A V + M + G P +TY +++ +C + A + D+M+
Sbjct: 230 TTILGGYVARGDMESAKRVLEEMLDR-GWYPDATTYTVLMDGYCKLGRFSEAATVMDDME 288
Query: 249 ARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEE 308
+ P Y +I +LC E K +A F EML+ P L + AL ++ +
Sbjct: 289 KNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVD 348
Query: 309 TAVVLAQKIDK 319
A L +K+ K
Sbjct: 349 EACGLWRKMLK 359
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 154 bits (390), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 156/313 (49%), Gaps = 5/313 (1%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M + G Q+L FN ++D LCKS+ VE+A E+F ++ R F D +Y ++L GW K
Sbjct: 152 MHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGR-FSVDTVTYNVILNGWCLIKR 210
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
EV +EM + G P++ +Y M+ A + A E F EM+ +C+ + T
Sbjct: 211 TPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTT 270
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
+++G G + A F + + G P TYNA++ C + +A M +EM + G
Sbjct: 271 VVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRG 330
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
PN TY++++ L AG + +RM + G EP TY +++R + ++V+ A
Sbjct: 331 YEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENE-GCEPNFQTYNMMIRYYSECSEVEKA 389
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDD---ACKYFQEMLDIGIRPPGQLFSNL 297
+ ++++M + LP + Y+ LI+ + + +D A K EM++ G P F+ +
Sbjct: 390 LGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVAGKLLLEMVERGFIPRKFTFNRV 449
Query: 298 KQALRDEGMEETA 310
L G + A
Sbjct: 450 LNGLLLTGNQAFA 462
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 113/228 (49%), Gaps = 2/228 (0%)
Query: 78 PDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQF 137
P ++ I+ + SA + D+AV+LF M C F T+++ L KR+ +A +
Sbjct: 124 PSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYEL 183
Query: 138 FGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIK 197
F + R F + TYN ++ +C R A ++ EM + GI PN TY+ +L +
Sbjct: 184 FRALRGR-FSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFR 242
Query: 198 AGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMH 257
AG+ A+ F M +K E V TY VV F ++ A ++DEM GVLP +
Sbjct: 243 AGQIRHAWEFFLEM-KKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVA 301
Query: 258 MYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 305
Y+ +I LC +D +++A F+EM+ G P ++ L + L G
Sbjct: 302 TYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAG 349
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 142/306 (46%), Gaps = 2/306 (0%)
Query: 12 DFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREM 71
F+ ID + + +M+ R P K++ I+ E + +++ M
Sbjct: 93 SFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNM 152
Query: 72 KDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRL 131
+ G D+ S+ +++ C +KR ++A ELFR + + + ++NG KR
Sbjct: 153 HEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTV-TYNVILNGWCLIKRT 211
Query: 132 SEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIV 191
+AL+ + +RG P TYN ++ + + +I A+ EM+K + TY V
Sbjct: 212 PKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTV 271
Query: 192 LHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG 251
+H AG + A +VF M R+ G P+V+TY ++++ C V+ A+ +++EM RG
Sbjct: 272 VHGFGVAGEIKRARNVFDEMIRE-GVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRG 330
Query: 252 VLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAV 311
P + Y+ LI L H + + Q M + G P Q ++ + + + E A+
Sbjct: 331 YEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKAL 390
Query: 312 VLAQKI 317
L +K+
Sbjct: 391 GLFEKM 396
>sp|Q9LFM6|PP375_ARATH Pentatricopeptide repeat-containing protein At5g11310,
mitochondrial OS=Arabidopsis thaliana GN=At5g11310 PE=2
SV=1
Length = 602
Score = 154 bits (390), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 159/308 (51%), Gaps = 4/308 (1%)
Query: 16 LIDTLCKSRHVERAQEVFDKMK---KRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMK 72
L+D LCK HV A +++ + P ++ + ILL GW + + L +++ EMK
Sbjct: 218 LLDALCKEGHVREASMYLERIGGTMDSNWVPSVRIFNILLNGWFRSRKLKQAEKLWEEMK 277
Query: 73 DDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132
+P VV+YG +I +C +R A+E+ EM+ + + +F +I+GLG RLS
Sbjct: 278 AMNVKPTVVTYGTLIEGYCRMRRVQIAMEVLEEMKMAEMEINFMVFNPIIDGLGEAGRLS 337
Query: 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVL 192
EAL + P TYN++V +C + + A +++ M G+ P T TY+
Sbjct: 338 EALGMMERFFVCESGPTIVTYNSLVKNFCKAGDLPGASKILKMMMTRGVDPTTTTYNHFF 397
Query: 193 HHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV 252
+ K +TEE +++ ++ + G P TY ++++M C + ++ +AM++ EMK RG+
Sbjct: 398 KYFSKHNKTEEGMNLYFKLI-EAGHSPDRLTYHLILKMLCEDGKLSLAMQVNKEMKNRGI 456
Query: 253 LPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVV 312
P + + LI+ LC + L++A + F + GI P F + LR +GM + A
Sbjct: 457 DPDLLTTTMLIHLLCRLEMLEEAFEEFDNAVRRGIIPQYITFKMIDNGLRSKGMSDMAKR 516
Query: 313 LAQKIDKL 320
L+ + L
Sbjct: 517 LSSLMSSL 524
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/212 (20%), Positives = 93/212 (43%)
Query: 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMK 72
FN +ID L ++ + A + ++ P I +Y L++ + + +L +++ + M
Sbjct: 323 FNPIIDGLGEAGRLSEALGMMERFFVCESGPTIVTYNSLVKNFCKAGDLPGASKILKMMM 382
Query: 73 DDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132
G +P +Y + +E + L+ ++ P + ++ L + +LS
Sbjct: 383 TRGVDPTTTTYNHFFKYFSKHNKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGKLS 442
Query: 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVL 192
A+Q + K RG +P+ T ++ C + +A+ D + GI P T+ ++
Sbjct: 443 LAMQVNKEMKNRGIDPDLLTTTMLIHLLCRLEMLEEAFEEFDNAVRRGIIPQYITFKMID 502
Query: 193 HHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTY 224
+ L G ++ A + MS P ++ +TY
Sbjct: 503 NGLRSKGMSDMAKRLSSLMSSLPHSKKLPNTY 534
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 106/248 (42%), Gaps = 14/248 (5%)
Query: 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELF 103
D+ + + LLE +++ + + + + G EP V + + S+ +V +
Sbjct: 69 DLSTISNLLE----NTDVVPGSSLESALDETGIEPSVELVHALFDRLSSSPMLLHSVFKW 124
Query: 104 REMEATNCKPSPHIFCTLINGL--GSEKRLSEALQFFGQSKKRGFE-PEAPTYNAVVGAY 160
EM+ SP +F +++N L E ++ +L F G A T+ ++ Y
Sbjct: 125 AEMKP-GFTLSPSLFDSVVNSLCKAREFEIAWSLVFDRVRSDEGSNLVSADTFIVLIRRY 183
Query: 161 CWSMRINDAYRMMDEMRK----CGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPG 216
+ + A R + R C R +++L L K G EA +R+
Sbjct: 184 ARAGMVQQAIRAFEFARSYEPVCKSATELRLLEVLLDALCKEGHVREASMYLERIGGTMD 243
Query: 217 TE--PTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDD 274
+ P+V + I++ + + ++ A ++W+EMKA V P + Y TLI C ++
Sbjct: 244 SNWVPSVRIFNILLNGWFRSRKLKQAEKLWEEMKAMNVKPTVVTYGTLIEGYCRMRRVQI 303
Query: 275 ACKYFQEM 282
A + +EM
Sbjct: 304 AMEVLEEM 311
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 6/145 (4%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G+ +N K E ++ K+ + PD +Y ++L+ + L
Sbjct: 385 GVDPTTTTYNHFFKYFSKHNKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGKLSLA 444
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
+V +EMK+ G +PD+++ ++I+ C + +EA E F P F + NG
Sbjct: 445 MQVNKEMKNRGIDPDLLTTTMLIHLLCRLEMLEEAFEEFDNAVRRGIIPQYITFKMIDNG 504
Query: 125 LGSE------KRLSEALQFFGQSKK 143
L S+ KRLS + SKK
Sbjct: 505 LRSKGMSDMAKRLSSLMSSLPHSKK 529
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/324 (27%), Positives = 169/324 (52%), Gaps = 1/324 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M++ +K + ++ +ID+LCK + A +F++M+ + D+ +Y+ L+ G
Sbjct: 236 MEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGK 295
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
++ REM PDVV++ +I+ + EA EL+ EM P + +
Sbjct: 296 WDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNS 355
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LI+G E L EA Q F +G EP+ TY+ ++ +YC + R++D R+ E+ G
Sbjct: 356 LIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKG 415
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+ PNT TY+ ++ ++G+ A +F+ M + G P+V TY I++ C N +++ A
Sbjct: 416 LIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSR-GVPPSVVTYGILLDGLCDNGELNKA 474
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+ I+++M+ + + +Y+ +I+ +C+ K+DDA F + D G++P ++ +
Sbjct: 475 LEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGG 534
Query: 301 LRDEGMEETAVVLAQKIDKLRKTP 324
L +G A +L +K+ + TP
Sbjct: 535 LCKKGSLSEADMLFRKMKEDGCTP 558
Score = 152 bits (384), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 160/317 (50%), Gaps = 1/317 (0%)
Query: 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNE 66
+ +L + LI+ LC V A + D+M + F PD +Y +L + N +
Sbjct: 172 RPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALD 231
Query: 67 VYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLG 126
++R+M++ + VV Y I+I++ C +D+A+ LF EME K + +LI GL
Sbjct: 232 LFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLC 291
Query: 127 SEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTR 186
++ + + + + R P+ T++A++ + ++ +A + +EM GI P+T
Sbjct: 292 NDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTI 351
Query: 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDE 246
TY+ ++ K EA +F M K G EP + TY I++ +C +VD MR++ E
Sbjct: 352 TYNSLIDGFCKENCLHEANQMFDLMVSK-GCEPDIVTYSILINSYCKAKRVDDGMRLFRE 410
Query: 247 MKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGM 306
+ ++G++P Y+TL+ C KL+ A + FQEM+ G+ P + L L D G
Sbjct: 411 ISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGE 470
Query: 307 EETAVVLAQKIDKLRKT 323
A+ + +K+ K R T
Sbjct: 471 LNKALEIFEKMQKSRMT 487
Score = 151 bits (382), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 154/293 (52%), Gaps = 7/293 (2%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M ++G + + + +++ LCKS + A ++F KM++R + Y+I+++ + +
Sbjct: 201 MVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGS 260
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
++ EM+ G + DVV+Y +I C+ ++D+ ++ REM N P F
Sbjct: 261 FDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSA 320
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LI+ E +L EA + + + RG P+ TYN+++ +C +++A +M D M G
Sbjct: 321 LIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKG 380
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
P+ TY I+++ KA R ++ +F+ +S K G P TY +V FC + +++ A
Sbjct: 381 CEPDIVTYSILINSYCKAKRVDDGMRLFREISSK-GLIPNTITYNTLVLGFCQSGKLNAA 439
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEM------LDIGI 287
++ EM +RGV P + Y L++ LC +L+ A + F++M L IGI
Sbjct: 440 KELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGI 492
Score = 149 bits (375), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 153/303 (50%), Gaps = 4/303 (1%)
Query: 10 LPD---FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNE 66
+PD F+ LID K + A+E++++M R PD +Y L++G+ ++ L N+
Sbjct: 312 IPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQ 371
Query: 67 VYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLG 126
++ M G EPD+V+Y I+IN++C AKR D+ + LFRE+ + P+ + TL+ G
Sbjct: 372 MFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFC 431
Query: 127 SEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTR 186
+L+ A + F + RG P TY ++ C + +N A + ++M+K +
Sbjct: 432 QSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIG 491
Query: 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDE 246
Y+I++H + A + ++A+S+F +S K G +P V TY +++ C + A ++ +
Sbjct: 492 IYNIIIHGMCNASKVDDAWSLFCSLSDK-GVKPDVVTYNVMIGGLCKKGSLSEADMLFRK 550
Query: 247 MKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGM 306
MK G P Y+ LI + L + + +EM G + L D +
Sbjct: 551 MKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSDRRL 610
Query: 307 EET 309
+++
Sbjct: 611 DKS 613
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 149/300 (49%), Gaps = 1/300 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M+ G+K ++ ++ LI LC + ++ +M R PD+ +++ L++ + ++
Sbjct: 271 MEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGK 330
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
LL E+Y EM G PD ++Y +I+ C EA ++F M + C+P +
Sbjct: 331 LLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSI 390
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LIN KR+ + ++ F + +G P TYN +V +C S ++N A + EM G
Sbjct: 391 LINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRG 450
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+ P+ TY I+L L G +A +F++M + T + Y I++ C ++VD A
Sbjct: 451 VPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMT-LGIGIYNIIIHGMCNASKVDDA 509
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
++ + +GV P + Y+ +I LC + L +A F++M + G P ++ L +A
Sbjct: 510 WSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRA 569
Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 137/286 (47%), Gaps = 1/286 (0%)
Query: 12 DFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREM 71
DFNRL + +++ + M+ + D+ + TI++ + ++K LL V
Sbjct: 72 DFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRA 131
Query: 72 KDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRL 131
G+EPD +++ ++N C R EAV L M +P TLINGL + R+
Sbjct: 132 WKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRV 191
Query: 132 SEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIV 191
SEAL + + GF+P+ TY V+ C S A + +M + I + Y IV
Sbjct: 192 SEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIV 251
Query: 192 LHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG 251
+ L K G ++A S+F M K G + V TY ++ C + + D ++ EM R
Sbjct: 252 IDSLCKDGSFDDALSLFNEMEMK-GIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRN 310
Query: 252 VLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNL 297
++P + +S LI+ E KL +A + + EM+ GI P +++L
Sbjct: 311 IIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSL 356
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 117/263 (44%), Gaps = 36/263 (13%)
Query: 78 PDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQF 137
P + + + +A K+YD + + ME + + +IN +K+L A
Sbjct: 68 PTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSV 127
Query: 138 FGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRK-----------------C- 179
G++ K G+EP+ T++ +V +C R+++A ++D M + C
Sbjct: 128 LGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCL 187
Query: 180 -----------------GIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVS 222
G P+ TY VL+ L K+G + A +F++M + + +V
Sbjct: 188 KGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEER-NIKASVV 246
Query: 223 TYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEM 282
Y IV+ C + D A+ +++EM+ +G+ + YS+LI LC++ K DD K +EM
Sbjct: 247 QYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREM 306
Query: 283 LDIGIRPPGQLFSNLKQALRDEG 305
+ I P FS L EG
Sbjct: 307 IGRNIIPDVVTFSALIDVFVKEG 329
Score = 94.7 bits (234), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 93/191 (48%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
GL +N L+ C+S + A+E+F +M R P + +Y ILL+G L
Sbjct: 415 GLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKA 474
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
E++ +M+ + Y I+I+ C+A + D+A LF + KP + +I G
Sbjct: 475 LEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGG 534
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
L + LSEA F + K+ G P+ TYN ++ A+ + + +++EM+ CG +
Sbjct: 535 LCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSAD 594
Query: 185 TRTYDIVLHHL 195
+ T +V+ L
Sbjct: 595 SSTIKMVIDML 605
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/316 (27%), Positives = 161/316 (50%), Gaps = 2/316 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M+ G++ + ++ LI LC A + M +R+ +PD+ +++ L++ + ++
Sbjct: 282 METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGK 341
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L+ ++Y EM +P +V+Y +IN C R DEA ++F M + +C P + T
Sbjct: 342 LVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNT 401
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LI G KR+ E ++ F + +RG TYN ++ + + A + EM G
Sbjct: 402 LIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDG 461
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+ PN TY+ +L L K G+ E+A VF+ + R EPT+ TY I++ C +V+
Sbjct: 462 VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK-MEPTIYTYNIMIEGMCKAGKVEDG 520
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
++ + +GV P + Y+T+I+ C + ++A F+EM + G P ++ L +A
Sbjct: 521 WDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRA 580
Query: 301 -LRDEGMEETAVVLAQ 315
LRD E +A ++ +
Sbjct: 581 RLRDGDREASAELIKE 596
Score = 142 bits (357), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 143/276 (51%), Gaps = 1/276 (0%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G + +L + +++ LCK + A + +KM++ + +P + Y +++G + K++
Sbjct: 216 GCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDA 275
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
+++EM+ G P+VV+Y +I+ C+ R+ +A L +M P F LI+
Sbjct: 276 LNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDA 335
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
E +L EA + + + KR +P TY++++ +C R+++A +M + M P+
Sbjct: 336 FVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPD 395
Query: 185 TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244
TY+ ++ K R EE VF+ MS++ TV TY I+++ DMA I+
Sbjct: 396 VVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTV-TYNILIQGLFQAGDCDMAQEIF 454
Query: 245 DEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQ 280
EM + GV P + Y+TL++ LC KL+ A F+
Sbjct: 455 KEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFE 490
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 154/311 (49%), Gaps = 13/311 (4%)
Query: 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEG------WGQQKNLLSMNE 66
+N +ID LCK +H++ A +F +M+ + P++ +Y+ L+ W LLS
Sbjct: 259 YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLS--- 315
Query: 67 VYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLG 126
+M + PDV ++ +I+A + EA +L+ EM + PS + +LING
Sbjct: 316 ---DMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFC 372
Query: 127 SEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTR 186
RL EA Q F + P+ TYN ++ +C R+ + + EM + G+ NT
Sbjct: 373 MHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTV 432
Query: 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDE 246
TY+I++ L +AG + A +FK M G P + TY ++ C N +++ AM +++
Sbjct: 433 TYNILIQGLFQAGDCDMAQEIFKEMV-SDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEY 491
Query: 247 MKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGM 306
++ + P ++ Y+ +I +C K++D F + G++P ++ + +G
Sbjct: 492 LQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGS 551
Query: 307 EETAVVLAQKI 317
+E A L +++
Sbjct: 552 KEEADALFKEM 562
Score = 135 bits (340), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 156/322 (48%), Gaps = 1/322 (0%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G + FN LI L A + D+M + PD+ +Y +++ G ++ +
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
+ +M+ EP V+ Y +I+ C K D+A+ LF+EME +P+ + +LI+
Sbjct: 241 FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
L + R S+A + +R P+ T++A++ A+ ++ +A ++ DEM K I P+
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 360
Query: 185 TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244
TY +++ R +EA +F+ M K P V TY +++ FC +V+ M ++
Sbjct: 361 IVTYSSLINGFCMHDRLDEAKQMFEFMVSKH-CFPDVVTYNTLIKGFCKYKRVEEGMEVF 419
Query: 245 DEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDE 304
EM RG++ Y+ LI L D A + F+EM+ G+ P ++ L L
Sbjct: 420 REMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKN 479
Query: 305 GMEETAVVLAQKIDKLRKTPLV 326
G E A+V+ + + + + P +
Sbjct: 480 GKLEKAMVVFEYLQRSKMEPTI 501
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 140/297 (47%), Gaps = 1/297 (0%)
Query: 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMK 72
F+ LID K + A++++D+M KR DP I +Y+ L+ G+ L +++ M
Sbjct: 329 FSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMV 388
Query: 73 DDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132
PDVV+Y +I C KR +E +E+FREM + + LI GL
Sbjct: 389 SKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCD 448
Query: 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVL 192
A + F + G P TYN ++ C + ++ A + + +++ + P TY+I++
Sbjct: 449 MAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMI 508
Query: 193 HHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV 252
+ KAG+ E+ + +F +S K G +P V Y ++ FC + A ++ EMK G
Sbjct: 509 EGMCKAGKVEDGWDLFCNLSLK-GVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGT 567
Query: 253 LPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEET 309
LP Y+TLI + + + + + +EM G + L D ++++
Sbjct: 568 LPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGRLDKS 624
Score = 130 bits (328), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 141/312 (45%), Gaps = 6/312 (1%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M G+ ++ LI+ C+ + A V KM K ++P+I + + LL G+ K
Sbjct: 107 MQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKR 166
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ + +M G++P+ V++ +I+ + EA+ L M A C+P +
Sbjct: 167 ISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGV 226
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
++NGL A + ++ EP YN ++ C ++DA + EM G
Sbjct: 227 VVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKG 286
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
I PN TY ++ L GR +A + M + P V T+ ++ F ++ A
Sbjct: 287 IRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK-INPDVFTFSALIDAFVKEGKLVEA 345
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+++DEM R + P + YS+LIN C D+LD+A + F+ M+ P ++ L +
Sbjct: 346 EKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKG 405
Query: 301 L-----RDEGME 307
+EGME
Sbjct: 406 FCKYKRVEEGME 417
Score = 128 bits (322), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 143/286 (50%), Gaps = 1/286 (0%)
Query: 12 DFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREM 71
+F++L+ + K + + ++M+ + +Y+IL+ + ++ L V +M
Sbjct: 83 EFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKM 142
Query: 72 KDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRL 131
G+EP++V+ ++N +C +KR EAV L +M T +P+ F TLI+GL +
Sbjct: 143 MKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKA 202
Query: 132 SEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIV 191
SEA+ + +G +P+ TY VV C + A+ ++++M + + P Y+ +
Sbjct: 203 SEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTI 262
Query: 192 LHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG 251
+ L K ++A ++FK M K G P V TY ++ C + A R+ +M R
Sbjct: 263 IDGLCKYKHMDDALNLFKEMETK-GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK 321
Query: 252 VLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNL 297
+ P + +S LI++ E KL +A K + EM+ I P +S+L
Sbjct: 322 INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSL 367
Score = 124 bits (312), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 137/280 (48%), Gaps = 1/280 (0%)
Query: 26 VERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGI 85
++ A +F +M K R P I ++ LL + + + +M++ G + +Y I
Sbjct: 62 LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSI 121
Query: 86 MINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRG 145
+IN C + A+ + +M +P+ +L+NG KR+SEA+ Q G
Sbjct: 122 LINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTG 181
Query: 146 FEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAY 205
++P T+N ++ + ++A ++D M G P+ TY +V++ L K G T+ A+
Sbjct: 182 YQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAF 241
Query: 206 SVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINS 265
++ +M + EP V Y ++ C +D A+ ++ EM+ +G+ P + YS+LI+
Sbjct: 242 NLLNKMEQGK-LEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300
Query: 266 LCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 305
LC+ + DA + +M++ I P FS L A EG
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEG 340
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 116/249 (46%), Gaps = 36/249 (14%)
Query: 92 SAKRYDEAVELFREMEATNCKPS--------------------------------PH--- 116
S + D+AV LF EM + PS PH
Sbjct: 58 SELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHY 117
Query: 117 IFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEM 176
+ LIN +L AL G+ K G+EP T ++++ YC S RI++A ++D+M
Sbjct: 118 TYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQM 177
Query: 177 RKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQ 236
G PNT T++ ++H L + EA ++ RM K G +P + TY +VV C
Sbjct: 178 FVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAK-GCQPDLVTYGVVVNGLCKRGD 236
Query: 237 VDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSN 296
D+A + ++M+ + P + +Y+T+I+ LC +DDA F+EM GIRP +S+
Sbjct: 237 TDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSS 296
Query: 297 LKQALRDEG 305
L L + G
Sbjct: 297 LISCLCNYG 305
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 77/152 (50%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G+ + +N L+D LCK+ +E+A VF+ +++ + +P I +Y I++EG + +
Sbjct: 461 GVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG 520
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
+++ + G +PDVV+Y MI+ C +EA LF+EM+ P+ + TLI
Sbjct: 521 WDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRA 580
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAV 156
+ + + + + GF +A T V
Sbjct: 581 RLRDGDREASAELIKEMRSCGFAGDASTIGLV 612
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 95/204 (46%), Gaps = 2/204 (0%)
Query: 123 NGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIG 182
NGL SE +L +A+ FG+ K P ++ ++ A + + + ++M+ GI
Sbjct: 55 NGL-SELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIP 113
Query: 183 PNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMR 242
N TY I+++ + + A +V +M K G EP + T ++ +C++ ++ A+
Sbjct: 114 HNHYTYSILINCFCRRSQLPLALAVLGKM-MKLGYEPNIVTLSSLLNGYCHSKRISEAVA 172
Query: 243 IWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALR 302
+ D+M G P ++TLI+ L +K +A M+ G +P + + L
Sbjct: 173 LVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLC 232
Query: 303 DEGMEETAVVLAQKIDKLRKTPLV 326
G + A L K+++ + P V
Sbjct: 233 KRGDTDLAFNLLNKMEQGKLEPGV 256
Score = 39.3 bits (90), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G+K ++ +N +I C+ E A +F +MK+ P+ Y L+ + + +
Sbjct: 531 GVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREAS 590
Query: 65 NEVYREMKDDGFEPDVVSYGIMIN 88
E+ +EM+ GF D + G++ N
Sbjct: 591 AELIKEMRSCGFAGDASTIGLVTN 614
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 164/319 (51%), Gaps = 1/319 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M+ G++ +L FN +I+ C V A + KM K ++PD + L+ G+ ++
Sbjct: 111 MEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNR 170
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ + +M + G++PD+V+Y +I++ C KR ++A + F+E+E +P+ +
Sbjct: 171 VSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTA 230
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
L+NGL + R S+A + K+ P TY+A++ A+ + ++ +A + +EM +
Sbjct: 231 LVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMS 290
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
I P+ TY +++ L R +EA +F M K G V +Y ++ FC +V+
Sbjct: 291 IDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSK-GCLADVVSYNTLINGFCKAKRVEDG 349
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
M+++ EM RG++ Y+TLI +D A ++F +M GI P ++ L
Sbjct: 350 MKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGG 409
Query: 301 LRDEGMEETAVVLAQKIDK 319
L D G E A+V+ + + K
Sbjct: 410 LCDNGELEKALVIFEDMQK 428
Score = 149 bits (376), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 88/316 (27%), Positives = 155/316 (49%), Gaps = 1/316 (0%)
Query: 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVY 68
+ DFNRL+ + K + + + KM+ D+ ++ I++ + + +
Sbjct: 84 SIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSIL 143
Query: 69 REMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSE 128
+M G+EPD V+ G ++N C R +AV L +M KP + +I+ L
Sbjct: 144 GKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKT 203
Query: 129 KRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTY 188
KR+++A FF + +++G P TY A+V C S R +DA R++ +M K I PN TY
Sbjct: 204 KRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITY 263
Query: 189 DIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMK 248
+L +K G+ EA +F+ M R +P + TY ++ C + ++D A +++D M
Sbjct: 264 SALLDAFVKNGKVLEAKELFEEMVRMS-IDPDIVTYSSLINGLCLHDRIDEANQMFDLMV 322
Query: 249 ARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEE 308
++G L + Y+TLIN C +++D K F+EM G+ ++ L Q G +
Sbjct: 323 SKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVD 382
Query: 309 TAVVLAQKIDKLRKTP 324
A ++D +P
Sbjct: 383 KAQEFFSQMDFFGISP 398
Score = 148 bits (374), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 84/312 (26%), Positives = 160/312 (51%), Gaps = 13/312 (4%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEG------ 54
M + G K ++ +N +ID+LCK++ V A + F +++++ P++ +YT L+ G
Sbjct: 181 MVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSR 240
Query: 55 WGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPS 114
W LLS +M P+V++Y +++A + EA ELF EM + P
Sbjct: 241 WSDAARLLS------DMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPD 294
Query: 115 PHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMD 174
+ +LINGL R+ EA Q F +G + +YN ++ +C + R+ D ++
Sbjct: 295 IVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFR 354
Query: 175 EMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYN 234
EM + G+ NT TY+ ++ +AG ++A F +M G P + TY I++ C N
Sbjct: 355 EMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDF-FGISPDIWTYNILLGGLCDN 413
Query: 235 AQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLF 294
+++ A+ I+++M+ R + + Y+T+I +C K+++A F + G++P +
Sbjct: 414 GELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTY 473
Query: 295 SNLKQALRDEGM 306
+ + L +G+
Sbjct: 474 TTMMSGLCTKGL 485
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 143/282 (50%), Gaps = 1/282 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
+++ G++ + + L++ LC S A + M K++ P++ +Y+ LL+ + +
Sbjct: 216 IERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGK 275
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+L E++ EM +PD+V+Y +IN C R DEA ++F M + C + T
Sbjct: 276 VLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNT 335
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LING KR+ + ++ F + +RG TYN ++ + + ++ A +M G
Sbjct: 336 LINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFG 395
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
I P+ TY+I+L L G E+A +F+ M ++ + + TY V+R C +V+ A
Sbjct: 396 ISPDIWTYNILLGGLCDNGELEKALVIFEDMQKRE-MDLDIVTYTTVIRGMCKTGKVEEA 454
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEM 282
++ + +G+ P + Y+T+++ LC + L + + +M
Sbjct: 455 WSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKM 496
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 125/241 (51%), Gaps = 1/241 (0%)
Query: 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMK 72
++ L+D K+ V A+E+F++M + DPDI +Y+ L+ G + N+++ M
Sbjct: 263 YSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMV 322
Query: 73 DDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132
G DVVSY +IN C AKR ++ ++LFREM + + TLI G +
Sbjct: 323 SKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVD 382
Query: 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVL 192
+A +FF Q G P+ TYN ++G C + + A + ++M+K + + TY V+
Sbjct: 383 KAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVI 442
Query: 193 HHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV 252
+ K G+ EEA+S+F +S K G +P + TY ++ C + ++ +MK G+
Sbjct: 443 RGMCKTGKVEEAWSLFCSLSLK-GLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGL 501
Query: 253 L 253
+
Sbjct: 502 M 502
Score = 124 bits (312), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 135/272 (49%), Gaps = 1/272 (0%)
Query: 15 RLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDD 74
RL T + + A ++F M K R P I + LL + K + + ++M+
Sbjct: 55 RLSKTRLRDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVL 114
Query: 75 GFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEA 134
G D+ ++ I+IN C + A+ + +M +P +L+NG R+S+A
Sbjct: 115 GIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDA 174
Query: 135 LQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHH 194
+ + + G++P+ YNA++ + C + R+NDA+ E+ + GI PN TY +++
Sbjct: 175 VSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNG 234
Query: 195 LIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLP 254
L + R +A + M +K T P V TY ++ F N +V A +++EM + P
Sbjct: 235 LCNSSRWSDAARLLSDMIKKKIT-PNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDP 293
Query: 255 VMHMYSTLINSLCHEDKLDDACKYFQEMLDIG 286
+ YS+LIN LC D++D+A + F M+ G
Sbjct: 294 DIVTYSSLINGLCLHDRIDEANQMFDLMVSKG 325
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 100/211 (47%), Gaps = 1/211 (0%)
Query: 95 RYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYN 154
+ ++A++LF +M + PS F L++ + K+ + + + G + T+N
Sbjct: 65 KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124
Query: 155 AVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRK 214
V+ +C +++ A ++ +M K G P+ T +++ + R +A S+ +M +
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMV-E 183
Query: 215 PGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDD 274
G +P + Y ++ C +V+ A + E++ +G+ P + Y+ L+N LC+ + D
Sbjct: 184 IGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSD 243
Query: 275 ACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 305
A + +M+ I P +S L A G
Sbjct: 244 AARLLSDMIKKKITPNVITYSALLDAFVKNG 274
Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 94/197 (47%), Gaps = 4/197 (2%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G ++ +N LI+ CK++ VE ++F +M +R + +Y L++G+ Q ++
Sbjct: 325 GCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKA 384
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
E + +M G PD+ +Y I++ C ++A+ +F +M+ + T+I G
Sbjct: 385 QEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRG 444
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
+ ++ EA F +G +P+ TY ++ C +++ + +M++ G+ N
Sbjct: 445 MCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKN 504
Query: 185 TRTY---DIVLH-HLIK 197
T DI L LIK
Sbjct: 505 DCTLSDGDITLSAELIK 521
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 90/197 (45%), Gaps = 1/197 (0%)
Query: 130 RLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYD 189
+L++A+ F K P +N ++ A + + + +M GI + T++
Sbjct: 65 KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124
Query: 190 IVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKA 249
IV++ + A S+ +M K G EP T +V FC +V A+ + D+M
Sbjct: 125 IVINCFCCCFQVSLALSILGKM-LKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVE 183
Query: 250 RGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEET 309
G P + Y+ +I+SLC +++DA +F+E+ GIRP ++ L L +
Sbjct: 184 IGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSD 243
Query: 310 AVVLAQKIDKLRKTPLV 326
A L + K + TP V
Sbjct: 244 AARLLSDMIKKKITPNV 260
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 160/310 (51%), Gaps = 1/310 (0%)
Query: 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVY 68
+ DF++++ + KS++ + +F M+ D+ SY I++ + + V
Sbjct: 68 SIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVV 127
Query: 69 REMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSE 128
+M G+EPDVV+ +IN C R +A++L +ME +P I+ T+I+G
Sbjct: 128 GKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKI 187
Query: 129 KRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTY 188
+++A++ F + ++ G +A TYN++V C S R +DA R+M +M I PN T+
Sbjct: 188 GLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITF 247
Query: 189 DIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMK 248
V+ +K G+ EA +++ M+R+ +P V TY ++ C + +VD A ++ D M
Sbjct: 248 TAVIDVFVKEGKFSEAMKLYEEMTRRC-VDPDVFTYNSLINGLCMHGRVDEAKQMLDLMV 306
Query: 249 ARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEE 308
+G LP + Y+TLIN C ++D+ K F+EM G+ ++ + Q G +
Sbjct: 307 TKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPD 366
Query: 309 TAVVLAQKID 318
A + ++D
Sbjct: 367 AAQEIFSRMD 376
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 154/319 (48%), Gaps = 4/319 (1%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M+ G+ +L +N +I+ LC+ A V KM K ++PD+ + + L+ G+ Q
Sbjct: 95 MEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNR 154
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ ++ +M++ GF PDVV Y +I+ C ++AVELF ME + + +
Sbjct: 155 VFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNS 214
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
L+ GL R S+A + R P T+ AV+ + + ++A ++ +EM +
Sbjct: 215 LVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRC 274
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+ P+ TY+ +++ L GR +EA + M K G P V TY ++ FC + +VD
Sbjct: 275 VDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTK-GCLPDVVTYNTLINGFCKSKRVDEG 333
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+++ EM RG++ Y+T+I + D A + F M RP + +S L
Sbjct: 334 TKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRM---DSRPNIRTYSILLYG 390
Query: 301 LRDEGMEETAVVLAQKIDK 319
L E A+VL + + K
Sbjct: 391 LCMNWRVEKALVLFENMQK 409
Score = 132 bits (333), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 142/289 (49%), Gaps = 4/289 (1%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M++ G++ + +N L+ LC S A + M R P++ ++T +++ + ++
Sbjct: 200 MERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGK 259
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
++Y EM +PDV +Y +IN C R DEA ++ M C P + T
Sbjct: 260 FSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNT 319
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LING KR+ E + F + +RG + TYN ++ Y + R + A + M
Sbjct: 320 LINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDS-- 377
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
PN RTY I+L+ L R E+A +F+ M +K E ++TY IV+ C V+ A
Sbjct: 378 -RPNIRTYSILLYGLCMNWRVEKALVLFENM-QKSEIELDITTYNIVIHGMCKIGNVEDA 435
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP 289
++ + +G+ P + Y+T+I+ C + + D + +++M + G+ P
Sbjct: 436 WDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 484
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 121/243 (49%), Gaps = 4/243 (1%)
Query: 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMK 72
F +ID K A +++++M +R DPD+ +Y L+ G + ++ M
Sbjct: 247 FTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMV 306
Query: 73 DDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132
G PDVV+Y +IN C +KR DE +LFREM + T+I G R
Sbjct: 307 TKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPD 366
Query: 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVL 192
A + F + R P TY+ ++ C + R+ A + + M+K I + TY+IV+
Sbjct: 367 AAQEIFSRMDSR---PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVI 423
Query: 193 HHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV 252
H + K G E+A+ +F+ +S K G +P V +Y ++ FC Q D + ++ +M+ G+
Sbjct: 424 HGMCKIGNVEDAWDLFRSLSCK-GLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGL 482
Query: 253 LPV 255
LP+
Sbjct: 483 LPL 485
>sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820
OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1
Length = 637
Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 166/310 (53%), Gaps = 5/310 (1%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M KFG + + F L+D LCK V+ A ++F+ M+ RF +++ +T LL GW +
Sbjct: 209 MPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMR-MRFPVNLRYFTSLLYGWCRVGK 267
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
++ V +M + GFEPD+V Y +++ + +A + +A +L R+M +P+ + +
Sbjct: 268 MMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTV 327
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LI L R+ EA++ F + ++ E + TY A+V +C +I+ Y ++D+M K G
Sbjct: 328 LIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKG 387
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+ P+ TY ++ K EE + ++M R+ P + Y +V+R+ C +V A
Sbjct: 388 LMPSELTYMHIMVAHEKKESFEECLELMEKM-RQIEYHPDIGIYNVVIRLACKLGEVKEA 446
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIG---IRPPGQLFSNL 297
+R+W+EM+ G+ P + + +IN L + L +A +F+EM+ G + G L L
Sbjct: 447 VRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVTRGLFSVSQYGTLKLLL 506
Query: 298 KQALRDEGME 307
L+D+ +E
Sbjct: 507 NTVLKDKKLE 516
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/318 (24%), Positives = 148/318 (46%), Gaps = 7/318 (2%)
Query: 13 FNRLIDTLCKSRHVERAQEVFDKMKKRR---FDPDIKSYTILLEGWGQQKNLLSMNEVYR 69
+ ++ L K R + ++M+K +P++ + +L++ + + EV
Sbjct: 150 YKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPEL--FVVLVQRFASADMVKKAIEVLD 207
Query: 70 EMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEK 129
EM GFEPD +G +++A C +A +LF +M + F +L+ G
Sbjct: 208 EMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMR-MRFPVNLRYFTSLLYGWCRVG 266
Query: 130 RLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYD 189
++ EA Q + GFEP+ Y ++ Y + ++ DAY ++ +MR+ G PN Y
Sbjct: 267 KMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYT 326
Query: 190 IVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKA 249
+++ L K R EEA VF M R E V TY +V FC ++D + D+M
Sbjct: 327 VLIQALCKVDRMEEAMKVFVEMERYE-CEADVVTYTALVSGFCKWGKIDKCYIVLDDMIK 385
Query: 250 RGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEET 309
+G++P Y ++ + ++ ++ + ++M I P +++ + + G +
Sbjct: 386 KGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKE 445
Query: 310 AVVLAQKIDKLRKTPLVD 327
AV L ++++ +P VD
Sbjct: 446 AVRLWNEMEENGLSPGVD 463
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 154/319 (48%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M K G + N L++ C + A + D+M + + PD ++T L+ G Q
Sbjct: 136 MMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNK 195
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ M G +PD+V+YG +IN C D A+ L +ME + I+ T
Sbjct: 196 ASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNT 255
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
+I+GL K + +A F + + +G +P+ TYN ++ C R +DA R++ +M +
Sbjct: 256 IIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKN 315
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
I P+ ++ ++ +K G+ EA ++ M + P V Y +++ FC +V+
Sbjct: 316 INPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEG 375
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
M ++ EM RG++ Y+TLI+ D+A F++M+ G+ P ++ L
Sbjct: 376 MEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDG 435
Query: 301 LRDEGMEETAVVLAQKIDK 319
L + G ETA+V+ + + K
Sbjct: 436 LCNNGNVETALVVFEYMQK 454
Score = 141 bits (356), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 156/310 (50%), Gaps = 2/310 (0%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G + +L + +I+ LCK + A + +KM+K + + D+ Y +++G + K++
Sbjct: 210 GCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDA 269
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
+++ +M+ G +PDV +Y +I+ C+ R+ +A L +M N P F LI+
Sbjct: 270 FDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDA 329
Query: 125 LGSEKRLSEALQFFGQ-SKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGP 183
E +L EA + + + K + P+ YN ++ +C R+ + + EM + G+
Sbjct: 330 FVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVG 389
Query: 184 NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRI 243
NT TY ++H +A + A VFK+M G P + TY I++ C N V+ A+ +
Sbjct: 390 NTVTYTTLIHGFFQARDCDNAQMVFKQMV-SDGVHPDIMTYNILLDGLCNNGNVETALVV 448
Query: 244 WDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRD 303
++ M+ R + + Y+T+I +LC K++D F + G++P ++ +
Sbjct: 449 FEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCR 508
Query: 304 EGMEETAVVL 313
+G++E A L
Sbjct: 509 KGLKEEADAL 518
Score = 128 bits (322), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 145/310 (46%), Gaps = 2/310 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M+ G+K ++ +N LI LC A + M ++ +PD+ + L++ + ++
Sbjct: 276 METKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGK 335
Query: 61 LLSMNEVYREM-KDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFC 119
L+ ++Y EM K PDVV+Y +I C KR +E +E+FREM + +
Sbjct: 336 LVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYT 395
Query: 120 TLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179
TLI+G + A F Q G P+ TYN ++ C + + A + + M+K
Sbjct: 396 TLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKR 455
Query: 180 GIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDM 239
+ + TY ++ L KAG+ E+ + +F +S K G +P V TY ++ FC +
Sbjct: 456 DMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLK-GVKPNVVTYTTMMSGFCRKGLKEE 514
Query: 240 AMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQ 299
A ++ EMK G LP Y+TLI + + + + +EM G F +
Sbjct: 515 ADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCGFAGDASTFGLVTN 574
Query: 300 ALRDEGMEET 309
L D ++++
Sbjct: 575 MLHDGRLDKS 584
Score = 127 bits (320), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 160/324 (49%), Gaps = 14/324 (4%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEG------ 54
M+K ++ ++ +N +ID LCK +H++ A ++F+KM+ + PD+ +Y L+
Sbjct: 241 MEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGR 300
Query: 55 WGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREM-EATNCKP 113
W LLS +M + PD+V + +I+A + EA +L+ EM ++ +C P
Sbjct: 301 WSDASRLLS------DMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFP 354
Query: 114 SPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMM 173
+ TLI G KR+ E ++ F + +RG TY ++ + + ++A +
Sbjct: 355 DVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVF 414
Query: 174 DEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCY 233
+M G+ P+ TY+I+L L G E A VF+ M ++ + + TY ++ C
Sbjct: 415 KQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRD-MKLDIVTYTTMIEALCK 473
Query: 234 NAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQL 293
+V+ ++ + +GV P + Y+T+++ C + ++A F EM + G P
Sbjct: 474 AGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGT 533
Query: 294 FSNLKQALRDEGMEETAVVLAQKI 317
++ L +A +G E + L +++
Sbjct: 534 YNTLIRARLRDGDEAASAELIKEM 557
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 117/228 (51%), Gaps = 1/228 (0%)
Query: 78 PDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQF 137
P +V + +++A ++D + L +M+ + + + IN +LS AL
Sbjct: 73 PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAI 132
Query: 138 FGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIK 197
G+ K G+ P T N+++ +C RI++A ++D+M + G P+T T+ ++H L +
Sbjct: 133 LGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQ 192
Query: 198 AGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMH 257
+ EA ++ +RM K G +P + TY V+ C + D+A+ + ++M+ + +
Sbjct: 193 HNKASEAVALVERMVVK-GCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVV 251
Query: 258 MYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 305
+Y+T+I+ LC +DDA F +M GI+P ++ L L + G
Sbjct: 252 IYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYG 299
Score = 112 bits (279), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 132/275 (48%), Gaps = 1/275 (0%)
Query: 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVY 68
+ +F++L+ + K + + ++M+ ++ +Y+I + + ++ L +
Sbjct: 74 SIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAIL 133
Query: 69 REMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSE 128
+M G+ P +V+ ++N C R EAV L +M +P F TL++GL
Sbjct: 134 GKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQH 193
Query: 129 KRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTY 188
+ SEA+ + +G +P+ TY AV+ C + A ++++M K I + Y
Sbjct: 194 NKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIY 253
Query: 189 DIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMK 248
+ ++ L K ++A+ +F +M K G +P V TY ++ C + A R+ +M
Sbjct: 254 NTIIDGLCKYKHMDDAFDLFNKMETK-GIKPDVFTYNPLISCLCNYGRWSDASRLLSDML 312
Query: 249 ARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEML 283
+ + P + ++ LI++ E KL +A K + EM+
Sbjct: 313 EKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMV 347
Score = 111 bits (277), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 136/279 (48%), Gaps = 6/279 (2%)
Query: 6 LKQELPDFNRLIDTLCKSRHVERAQEVFDKM-KKRRFDPDIKSYTILLEGWGQQKNLLSM 64
+ +L FN LID K + A++++D+M K + PD+ +Y L++G+ + K +
Sbjct: 316 INPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEG 375
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
EV+REM G + V+Y +I+ A+ D A +F++M + P + L++G
Sbjct: 376 MEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDG 435
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
L + + AL F +KR + + TY ++ A C + ++ D + + + G+ PN
Sbjct: 436 LCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPN 495
Query: 185 TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244
TY ++ + G EEA ++F M ++ G P TY ++R + + +
Sbjct: 496 VVTYTTMMSGFCRKGLKEEADALFVEM-KEDGPLPNSGTYNTLIRARLRDGDEAASAELI 554
Query: 245 DEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEML 283
EM++ G + L+ ++ H+ +LD K F +ML
Sbjct: 555 KEMRSCGFAGDASTFG-LVTNMLHDGRLD---KSFLDML 589
Score = 111 bits (277), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 130/280 (46%), Gaps = 1/280 (0%)
Query: 26 VERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGI 85
++ A +F M K R P I ++ LL + + + +M++ G ++ +Y I
Sbjct: 56 LDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 115
Query: 86 MINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRG 145
IN C + A+ + +M PS +L+NG R+SEA+ Q + G
Sbjct: 116 FINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 175
Query: 146 FEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAY 205
++P+ T+ +V + ++A +++ M G P+ TY V++ L K G + A
Sbjct: 176 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 235
Query: 206 SVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINS 265
++ +M K E V Y ++ C +D A ++++M+ +G+ P + Y+ LI+
Sbjct: 236 NLLNKM-EKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISC 294
Query: 266 LCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 305
LC+ + DA + +ML+ I P F+ L A EG
Sbjct: 295 LCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEG 334
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 99/205 (48%), Gaps = 1/205 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M + GL + LI ++R + AQ VF +M PDI +Y ILL+G N
Sbjct: 382 MSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGN 441
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ + V+ M+ + D+V+Y MI A C A + ++ +LF + KP+ + T
Sbjct: 442 VETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTT 501
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
+++G + EA F + K+ G P + TYN ++ A + ++ EMR CG
Sbjct: 502 MMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCG 561
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAY 205
+ T+ +V +++ GR ++++
Sbjct: 562 FAGDASTFGLV-TNMLHDGRLDKSF 585
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 154/311 (49%), Gaps = 1/311 (0%)
Query: 3 KFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLL 62
+G+ ++ +N LI K V A EV M+ + P++ SYTIL++G+ + +
Sbjct: 382 SYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKID 441
Query: 63 SMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLI 122
V EM DG +P+ V + +I+A C R EAVE+FREM CKP + F +LI
Sbjct: 442 EAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLI 501
Query: 123 NGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIG 182
+GL + AL G TYN ++ A+ I +A ++++EM G
Sbjct: 502 SGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSP 561
Query: 183 PNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMR 242
+ TY+ ++ L +AG ++A S+F++M R G P+ + I++ C + V+ A+
Sbjct: 562 LDEITYNSLIKGLCRAGEVDKARSLFEKMLRD-GHAPSNISCNILINGLCRSGMVEEAVE 620
Query: 243 IWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALR 302
EM RG P + +++LIN LC +++D F+++ GI P F+ L L
Sbjct: 621 FQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLC 680
Query: 303 DEGMEETAVVL 313
G A +L
Sbjct: 681 KGGFVYDACLL 691
Score = 132 bits (331), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 155/312 (49%), Gaps = 2/312 (0%)
Query: 7 KQELPDFNRLIDTLCKSRHVERAQEVF-DKMKKRRFDPDIKSYTILLEGWGQQKNLLSMN 65
K E+ FN LI ++ A+ V D + PD+ +Y L+ G+ ++ +
Sbjct: 350 KPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLAL 409
Query: 66 EVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGL 125
EV +M++ G +P+V SY I+++ C + DEA + EM A KP+ F LI+
Sbjct: 410 EVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAF 469
Query: 126 GSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNT 185
E R+ EA++ F + ++G +P+ T+N+++ C I A ++ +M G+ NT
Sbjct: 470 CKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANT 529
Query: 186 RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWD 245
TY+ +++ ++ G +EA + M + G+ TY +++ C +VD A +++
Sbjct: 530 VTYNTLINAFLRRGEIKEARKLVNEMVFQ-GSPLDEITYNSLIKGLCRAGEVDKARSLFE 588
Query: 246 EMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 305
+M G P + LIN LC +++A ++ +EM+ G P F++L L G
Sbjct: 589 KMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAG 648
Query: 306 MEETAVVLAQKI 317
E + + +K+
Sbjct: 649 RIEDGLTMFRKL 660
Score = 124 bits (312), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 142/306 (46%), Gaps = 6/306 (1%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M K G + LI +L K V A ++ ++M PD +++ ++ G +
Sbjct: 243 MTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDR 302
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ ++ M GF PD ++YG ++N C R D A +LF + KP IF T
Sbjct: 303 INEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIP----KPEIVIFNT 358
Query: 121 LINGLGSEKRLSEALQFFG-QSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179
LI+G + RL +A G P+ TYN+++ Y + A ++ +MR
Sbjct: 359 LIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNK 418
Query: 180 GIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDM 239
G PN +Y I++ K G+ +EAY+V MS G +P + ++ FC ++
Sbjct: 419 GCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSAD-GLKPNTVGFNCLISAFCKEHRIPE 477
Query: 240 AMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQ 299
A+ I+ EM +G P ++ +++LI+ LC D++ A ++M+ G+ ++ L
Sbjct: 478 AVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLIN 537
Query: 300 ALRDEG 305
A G
Sbjct: 538 AFLRRG 543
Score = 122 bits (305), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 130/294 (44%), Gaps = 31/294 (10%)
Query: 42 DPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVE 101
+P KSY ++LE V+ +M P + ++G+++ A C+ D A+
Sbjct: 179 EPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALS 238
Query: 102 LFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYC 161
L R+M C P+ I+ TLI+ L R++EALQ + G P+A T+N V+ C
Sbjct: 239 LLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLC 298
Query: 162 WSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKR----------- 210
RIN+A +M++ M G P+ TY +++ L K GR + A +F R
Sbjct: 299 KFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNT 358
Query: 211 --------------------MSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR 250
M G P V TY ++ + V +A+ + +M+ +
Sbjct: 359 LIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNK 418
Query: 251 GVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDE 304
G P ++ Y+ L++ C K+D+A EM G++P F+ L A E
Sbjct: 419 GCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKE 472
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/354 (24%), Positives = 155/354 (43%), Gaps = 44/354 (12%)
Query: 10 LPD---FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNE 66
+PD FN +I LCK + A ++ ++M R F PD +Y L+ G + + + +
Sbjct: 284 VPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKD 343
Query: 67 VYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEAT-NCKPSPHIFCTLINGL 125
++ + +P++V + +I+ + R D+A + +M + P + +LI G
Sbjct: 344 LFYRIP----KPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGY 399
Query: 126 GSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNT 185
E + AL+ + +G +P +Y +V +C +I++AY +++EM G+ PNT
Sbjct: 400 WKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNT 459
Query: 186 RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWD 245
++ ++ K R EA +F+ M RK G +P V T+ ++ C ++ A+ +
Sbjct: 460 VGFNCLISAFCKEHRIPEAVEIFREMPRK-GCKPDVYTFNSLISGLCEVDEIKHALWLLR 518
Query: 246 EMKARGVLPVMHMYSTLIN-----------------------------------SLCHED 270
+M + GV+ Y+TLIN LC
Sbjct: 519 DMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAG 578
Query: 271 KLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTP 324
++D A F++ML G P + L L GM E AV +++ TP
Sbjct: 579 EVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTP 632
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 122/273 (44%), Gaps = 1/273 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M GLK FN LI CK + A E+F +M ++ PD+ ++ L+ G +
Sbjct: 450 MSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDE 509
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ + R+M +G + V+Y +INA EA +L EM + +
Sbjct: 510 IKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNS 569
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LI GL + +A F + + G P + N ++ C S + +A EM G
Sbjct: 570 LIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRG 629
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
P+ T++ +++ L +AGR E+ ++F+++ + G P T+ ++ C V A
Sbjct: 630 STPDIVTFNSLINGLCRAGRIEDGLTMFRKL-QAEGIPPDTVTFNTLMSWLCKGGFVYDA 688
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLD 273
+ DE G +P +S L+ S+ ++ LD
Sbjct: 689 CLLLDEGIEDGFVPNHRTWSILLQSIIPQETLD 721
Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 114/279 (40%), Gaps = 7/279 (2%)
Query: 48 YTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREM- 106
Y +L+ G +++ + +MKD+G + ++ + A + L EM
Sbjct: 114 YQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMR 173
Query: 107 EATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRI 166
+C+P+ + ++ L S A F R P T+ V+ A+C I
Sbjct: 174 NVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEI 233
Query: 167 NDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEI 226
+ A ++ +M K G PN+ Y ++H L K R EA + + M G P T+
Sbjct: 234 DSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLM-GCVPDAETFND 292
Query: 227 VVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIG 286
V+ C +++ A ++ + M RG P Y L+N LC ++D A F +
Sbjct: 293 VILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRI---- 348
Query: 287 IRPPGQLFSNLKQALRDEG-MEETAVVLAQKIDKLRKTP 324
+P +F+ L G +++ VL+ + P
Sbjct: 349 PKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVP 387
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/172 (17%), Positives = 72/172 (41%), Gaps = 1/172 (0%)
Query: 131 LSEALQFFGQS-KKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYD 189
+S +++ F + + G+ Y ++G + R++ +M+ GI +
Sbjct: 91 VSTSMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFI 150
Query: 190 IVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKA 249
++ KAG + + M EPT +Y +V+ + +A ++ +M +
Sbjct: 151 SIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLS 210
Query: 250 RGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQAL 301
R + P + + ++ + C +++D A ++M G P ++ L +L
Sbjct: 211 RKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSL 262
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 152 bits (385), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 156/293 (53%), Gaps = 7/293 (2%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M ++G + + +++ +CKS A E+ KM++R D Y+I+++G + +
Sbjct: 219 MVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGS 278
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L + ++ EM+ G ++++Y I+I C+A R+D+ +L R+M P+ F
Sbjct: 279 LDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSV 338
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LI+ E +L EA + + RG P+ TY +++ +C ++ A +M+D M G
Sbjct: 339 LIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKG 398
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
PN RT++I+++ KA R ++ +F++MS + TV TY +++ FC ++++A
Sbjct: 399 CDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTV-TYNTLIQGFCELGKLNVA 457
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEM------LDIGI 287
++ EM +R V P + Y L++ LC + + A + F+++ LDIGI
Sbjct: 458 KELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGI 510
Score = 149 bits (376), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 82/319 (25%), Positives = 160/319 (50%), Gaps = 1/319 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M+ G+ + +N LI C + + ++ M KR+ +P++ ++++L++ + ++
Sbjct: 289 MEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGK 348
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L E+++EM G PD ++Y +I+ C D+A ++ M + C P+ F
Sbjct: 349 LREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNI 408
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LING R+ + L+ F + RG + TYN ++ +C ++N A + EM
Sbjct: 409 LINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRK 468
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+ PN TY I+L L G +E+A +F+++ K E + Y I++ C ++VD A
Sbjct: 469 VPPNIVTYKILLDGLCDNGESEKALEIFEKI-EKSKMELDIGIYNIIIHGMCNASKVDDA 527
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
++ + +GV P + Y+ +I LC + L +A F++M + G P G ++ L +A
Sbjct: 528 WDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRA 587
Query: 301 LRDEGMEETAVVLAQKIDK 319
+G +V L +++ +
Sbjct: 588 HLGDGDATKSVKLIEELKR 606
Score = 144 bits (364), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 154/322 (47%), Gaps = 2/322 (0%)
Query: 3 KFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLL 62
K G + F+ LI+ LC V A E+ D+M + PD+ + L+ G
Sbjct: 151 KLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEA 210
Query: 63 SMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLI 122
+ +M + G +P+ V+YG ++N C + + A+EL R+ME N K + +I
Sbjct: 211 EAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIII 270
Query: 123 NGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIG 182
+GL L A F + + +G TYN ++G +C + R +D +++ +M K I
Sbjct: 271 DGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKIN 330
Query: 183 PNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMR 242
PN T+ +++ +K G+ EA + K M + G P TY ++ FC +D A +
Sbjct: 331 PNVVTFSVLIDSFVKEGKLREAEELHKEMIHR-GIAPDTITYTSLIDGFCKENHLDKANQ 389
Query: 243 IWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALR 302
+ D M ++G P + ++ LIN C +++DD + F++M G+ ++ L Q
Sbjct: 390 MVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFC 449
Query: 303 DEGMEETAVVLAQKIDKLRKTP 324
+ G A L Q++ RK P
Sbjct: 450 ELGKLNVAKELFQEMVS-RKVP 470
Score = 124 bits (312), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 128/247 (51%), Gaps = 1/247 (0%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G+ + + LID CK H+++A ++ D M + DP+I+++ IL+ G+ + +
Sbjct: 363 GIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDG 422
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
E++R+M G D V+Y +I C + + A ELF+EM + P+ + L++G
Sbjct: 423 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDG 482
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
L +AL+ F + +K E + YN ++ C + +++DA+ + + G+ P
Sbjct: 483 LCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPG 542
Query: 185 TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244
+TY+I++ L K G EA +F++M + G P TY I++R + ++++
Sbjct: 543 VKTYNIMIGGLCKKGPLSEAELLFRKM-EEDGHAPDGWTYNILIRAHLGDGDATKSVKLI 601
Query: 245 DEMKARG 251
+E+K G
Sbjct: 602 EELKRCG 608
Score = 121 bits (303), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 134/277 (48%), Gaps = 1/277 (0%)
Query: 29 AQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMIN 88
A ++F M R P + ++ L + K + + ++M+ G ++ + IMIN
Sbjct: 72 AIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMIN 131
Query: 89 AHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEP 148
C ++ A ++ +P+ F TLINGL E R+SEAL+ + + G +P
Sbjct: 132 CFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKP 191
Query: 149 EAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVF 208
+ T N +V C S + +A ++D+M + G PN TY VL+ + K+G+T A +
Sbjct: 192 DLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELL 251
Query: 209 KRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCH 268
++M + V Y I++ C + +D A +++EM+ +G+ + Y+ LI C+
Sbjct: 252 RKMEERNIKLDAVK-YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCN 310
Query: 269 EDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 305
+ DD K ++M+ I P FS L + EG
Sbjct: 311 AGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEG 347
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 104/201 (51%), Gaps = 1/201 (0%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G+ + +N LI C+ + A+E+F +M R+ P+I +Y ILL+G
Sbjct: 433 GVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKA 492
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
E++ +++ E D+ Y I+I+ C+A + D+A +LF + KP + +I G
Sbjct: 493 LEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGG 552
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
L + LSEA F + ++ G P+ TYN ++ A+ + ++++E+++CG +
Sbjct: 553 LCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVD 612
Query: 185 TRTYDIVLHHLIKAGRTEEAY 205
T +V+ ++ GR ++++
Sbjct: 613 ASTIKMVI-DMLSDGRLKKSF 632
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 36/223 (16%)
Query: 95 RYDEAVELFREMEATNCKPSPHIFCTLINGLGSEK------------------------- 129
+ D+A++LFR+M + P+ F L + + K
Sbjct: 68 KADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLS 127
Query: 130 ----------RLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179
+L A G+ K G+EP T++ ++ C R+++A ++D M +
Sbjct: 128 IMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEM 187
Query: 180 GIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDM 239
G P+ T + +++ L +G+ EA + +M + G +P TY V+ + C + Q +
Sbjct: 188 GHKPDLITINTLVNGLCLSGKEAEAMLLIDKMV-EYGCQPNAVTYGPVLNVMCKSGQTAL 246
Query: 240 AMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEM 282
AM + +M+ R + YS +I+ LC LD+A F EM
Sbjct: 247 AMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEM 289
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 152 bits (384), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/289 (29%), Positives = 145/289 (50%), Gaps = 1/289 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M+K G+ ++ +N LI LC S A + M KR PD+ ++ L++ ++
Sbjct: 212 MEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGR 271
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ E Y EM +PD+V+Y ++I C R DEA E+F M + C P +
Sbjct: 272 VSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSI 331
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LING K++ ++ F + +RG TY ++ YC + ++N A + M CG
Sbjct: 332 LINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCG 391
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+ PN TY+++LH L G+ E+A + M +K G + + TY I++R C +V A
Sbjct: 392 VHPNIITYNVLLHGLCDNGKIEKALVILADM-QKNGMDADIVTYNIIIRGMCKAGEVADA 450
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP 289
I+ + +G++P + Y+T++ L + +A F++M + GI P
Sbjct: 451 WDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGILP 499
Score = 151 bits (382), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 158/319 (49%), Gaps = 1/319 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M G+ L N L++ C+ + A KM K +P I ++ LL G+ +
Sbjct: 107 MQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDR 166
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ ++ +M G++P+VV Y +I+ C +K+ D A++L ME P + +
Sbjct: 167 VYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNS 226
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LI+GL S R S+A + KR P+ T+NA++ A R+++A +EM +
Sbjct: 227 LISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRS 286
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+ P+ TY ++++ L R +EA +F M K G P V TY I++ +C + +V+
Sbjct: 287 LDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSK-GCFPDVVTYSILINGYCKSKKVEHG 345
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
M+++ EM RGV+ Y+ LI C KL+ A + F+ M+ G+ P ++ L
Sbjct: 346 MKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHG 405
Query: 301 LRDEGMEETAVVLAQKIDK 319
L D G E A+V+ + K
Sbjct: 406 LCDNGKIEKALVILADMQK 424
Score = 142 bits (359), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 151/317 (47%), Gaps = 1/317 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M G K + +N +ID LCKS+ V+ A ++ ++M+K PD+ +Y L+ G
Sbjct: 177 MVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGR 236
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ M PDV ++ +I+A R EA E + EM + P +
Sbjct: 237 WSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSL 296
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LI GL RL EA + FG +G P+ TY+ ++ YC S ++ ++ EM + G
Sbjct: 297 LIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRG 356
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+ NT TY I++ +AG+ A +F+RM G P + TY +++ C N +++ A
Sbjct: 357 VVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVF-CGVHPNIITYNVLLHGLCDNGKIEKA 415
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+ I +M+ G+ + Y+ +I +C ++ DA + + G+ P ++ +
Sbjct: 416 LVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLG 475
Query: 301 LRDEGMEETAVVLAQKI 317
L +G+ A L +K+
Sbjct: 476 LYKKGLRREADALFRKM 492
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 136/287 (47%), Gaps = 1/287 (0%)
Query: 11 PDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYRE 70
D+ ++ + ++ + ++F M + R P I ++ LL + K + ++ +
Sbjct: 47 SDYREMLRNGIRFMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQ 106
Query: 71 MKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKR 130
M+ G ++ + I++N C + A+ +M +PS F +L+NG R
Sbjct: 107 MQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDR 166
Query: 131 LSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDI 190
+ +AL F Q G++P YN ++ C S ++++A +++ M K GIGP+ TY+
Sbjct: 167 VYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNS 226
Query: 191 VLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR 250
++ L +GR +A + M+++ P V T+ ++ +V A ++EM R
Sbjct: 227 LISGLCSSGRWSDATRMVSCMTKRE-IYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRR 285
Query: 251 GVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNL 297
+ P + YS LI LC +LD+A + F M+ G P +S L
Sbjct: 286 SLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSIL 332
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 44/79 (55%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M K G+ ++ +N +I +CK+ V A +++ + + PDI +YT ++ G ++
Sbjct: 422 MQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGL 481
Query: 61 LLSMNEVYREMKDDGFEPD 79
+ ++R+MK+DG P+
Sbjct: 482 RREADALFRKMKEDGILPN 500
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 152 bits (383), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 161/316 (50%), Gaps = 2/316 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
MD G++ ++ ++ LI LC A + M +R+ +P++ +++ L++ + ++
Sbjct: 284 MDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 343
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L+ ++Y EM +PD+ +Y +IN C R DEA +F M + +C P+ + T
Sbjct: 344 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYST 403
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LI G KR+ E ++ F + +RG TY ++ + + ++A + +M G
Sbjct: 404 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVG 463
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+ PN TY+I+L L K G+ +A VF+ + R EP + TY I++ C +V+
Sbjct: 464 VHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRST-MEPDIYTYNIMIEGMCKAGKVEDG 522
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
++ + +GV P + Y+T+I+ C + ++A ++M + G P ++ L +A
Sbjct: 523 WELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRA 582
Query: 301 -LRDEGMEETAVVLAQ 315
LRD E +A ++ +
Sbjct: 583 RLRDGDREASAELIKE 598
Score = 138 bits (347), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 144/312 (46%), Gaps = 6/312 (1%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M G+ +L ++ I+ C+ + A V KM K ++PDI + + LL G+ K
Sbjct: 109 MQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKR 168
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ + +M + G++PD ++ +I+ + EAV L +M C+P + T
Sbjct: 169 ISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGT 228
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
++NGL + AL + +K E + YN ++ C ++DA + EM G
Sbjct: 229 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKG 288
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
I P+ TY ++ L GR +A + M + P V T+ ++ F ++ A
Sbjct: 289 IRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERK-INPNVVTFSALIDAFVKEGKLVEA 347
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+++DEM R + P + YS+LIN C D+LD+A F+ M+ P +S L +
Sbjct: 348 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKG 407
Query: 301 L-----RDEGME 307
+EGME
Sbjct: 408 FCKAKRVEEGME 419
Score = 137 bits (346), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 84/358 (23%), Positives = 160/358 (44%), Gaps = 34/358 (9%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M K G + ++ + L++ C S+ + A + D+M + + PD ++T L+ G
Sbjct: 144 MMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNK 203
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ +M G +PD+V+YG ++N C D A+ L ++ME + I+ T
Sbjct: 204 ASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNT 263
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
+I+GL K + +AL F + +G P+ TY++++ C R +DA R++ +M +
Sbjct: 264 IIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERK 323
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKP------------------------- 215
I PN T+ ++ +K G+ EA ++ M ++
Sbjct: 324 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 383
Query: 216 ---------GTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSL 266
P V TY +++ FC +V+ M ++ EM RG++ Y+TLI+
Sbjct: 384 HMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGF 443
Query: 267 CHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTP 324
D+A F++M+ +G+ P ++ L L G A+V+ + + + P
Sbjct: 444 FQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEP 501
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 141/297 (47%), Gaps = 1/297 (0%)
Query: 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMK 72
F+ LID K + A++++D+M KR DPDI +Y+ L+ G+ L ++ M
Sbjct: 331 FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMI 390
Query: 73 DDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132
P+VV+Y +I C AKR +E +ELFREM + + TLI+G +
Sbjct: 391 SKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCD 450
Query: 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVL 192
A F Q G P TYN ++ C + ++ A + + +++ + P+ TY+I++
Sbjct: 451 NAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMI 510
Query: 193 HHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV 252
+ KAG+ E+ + +F +S K G P V Y ++ FC + A + +MK G
Sbjct: 511 EGMCKAGKVEDGWELFCNLSLK-GVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGP 569
Query: 253 LPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEET 309
LP Y+TLI + + + + + +EM G + L D ++++
Sbjct: 570 LPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGRLDKS 626
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/335 (25%), Positives = 162/335 (48%), Gaps = 15/335 (4%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEG------ 54
M+K ++ ++ +N +ID LCK +H++ A +F +M + PD+ +Y+ L+
Sbjct: 249 MEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGR 308
Query: 55 WGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPS 114
W LLS +M + P+VV++ +I+A + EA +L+ EM + P
Sbjct: 309 WSDASRLLS------DMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 362
Query: 115 PHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMD 174
+ +LING RL EA F + P TY+ ++ +C + R+ + +
Sbjct: 363 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFR 422
Query: 175 EMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYN 234
EM + G+ NT TY ++H +A + A VFK+M G P + TY I++ C N
Sbjct: 423 EMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMV-SVGVHPNILTYNILLDGLCKN 481
Query: 235 AQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLF 294
++ AM +++ ++ + P ++ Y+ +I +C K++D + F + G+ P +
Sbjct: 482 GKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAY 541
Query: 295 SNLKQALRDEGMEETAVVLAQKIDKLRKTPLVDRG 329
+ + +G +E A L +K+ + PL + G
Sbjct: 542 NTMISGFCRKGSKEEADSLLKKMKE--DGPLPNSG 574
Score = 134 bits (337), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 141/289 (48%), Gaps = 1/289 (0%)
Query: 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVY 68
+ +FN+L+ + K E + ++M+ D+ +Y+I + + ++ L V
Sbjct: 82 SIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVL 141
Query: 69 REMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSE 128
+M G+EPD+V+ ++N +C +KR +AV L +M KP F TLI+GL
Sbjct: 142 AKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLH 201
Query: 129 KRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTY 188
+ SEA+ Q +RG +P+ TY VV C I+ A ++ +M K I + Y
Sbjct: 202 NKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIY 261
Query: 189 DIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMK 248
+ ++ L K ++A ++F M K G P V TY ++ C + A R+ +M
Sbjct: 262 NTIIDGLCKYKHMDDALNLFTEMDNK-GIRPDVFTYSSLISCLCNYGRWSDASRLLSDMI 320
Query: 249 ARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNL 297
R + P + +S LI++ E KL +A K + EM+ I P +S+L
Sbjct: 321 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 369
Score = 124 bits (312), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 138/292 (47%), Gaps = 5/292 (1%)
Query: 14 NRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKD 73
NRL D + V+ A ++F M K R P I + LL + + + +M+
Sbjct: 56 NRLSDII----KVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQT 111
Query: 74 DGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSE 133
G D+ +Y I IN C + A+ + +M +P +L+NG KR+S+
Sbjct: 112 LGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISD 171
Query: 134 ALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLH 193
A+ Q + G++P+ T+ ++ + ++A ++D+M + G P+ TY V++
Sbjct: 172 AVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVN 231
Query: 194 HLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL 253
L K G + A S+ K+M K E V Y ++ C +D A+ ++ EM +G+
Sbjct: 232 GLCKRGDIDLALSLLKKM-EKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIR 290
Query: 254 PVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 305
P + YS+LI+ LC+ + DA + +M++ I P FS L A EG
Sbjct: 291 PDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEG 342
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 75/156 (48%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M G+ + +N L+D LCK+ + +A VF+ +++ +PDI +Y I++EG +
Sbjct: 459 MVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGK 518
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ E++ + G P+V++Y MI+ C +EA L ++M+ P+ + T
Sbjct: 519 VEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNT 578
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAV 156
LI + + + + + GF +A T V
Sbjct: 579 LIRARLRDGDREASAELIKEMRSCGFAGDASTIGLV 614
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 109/253 (43%), Gaps = 15/253 (5%)
Query: 67 VYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLG 126
V+ ++ G P V S+ + + C + + A +RE+ L N L
Sbjct: 14 VHWNLQGIGNPPTVPSFFNLCGSGCWERSFASASGDYREI--------------LRNRLS 59
Query: 127 SEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTR 186
++ +A+ FG K P +N ++ A + + ++M+ GI +
Sbjct: 60 DIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLY 119
Query: 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDE 246
TY I ++ + + A +V +M K G EP + T ++ +C++ ++ A+ + D+
Sbjct: 120 TYSIFINCFCRRSQLSLALAVLAKM-MKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQ 178
Query: 247 MKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGM 306
M G P ++TLI+ L +K +A +M+ G +P + + L G
Sbjct: 179 MVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGD 238
Query: 307 EETAVVLAQKIDK 319
+ A+ L +K++K
Sbjct: 239 IDLALSLLKKMEK 251
Score = 36.2 bits (82), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G+ + +N +I C+ E A + KMK+ P+ +Y L+ + + +
Sbjct: 533 GVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREAS 592
Query: 65 NEVYREMKDDGFEPDVVSYGIMIN 88
E+ +EM+ GF D + G++ N
Sbjct: 593 AELIKEMRSCGFAGDASTIGLVTN 616
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 151 bits (382), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 157/304 (51%), Gaps = 2/304 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
MD G++ + +N LI LC A + M +R+ +P++ +++ L++ + ++
Sbjct: 281 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 340
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L+ ++Y EM +PD+ +Y +IN C R DEA +F M + +C P+ + T
Sbjct: 341 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNT 400
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LI G KR+ E ++ F + +RG TYN ++ + + A ++ +M G
Sbjct: 401 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 460
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+ P+ TY I+L L K G+ E+A VF+ + +K EP + TY I++ C +V+
Sbjct: 461 VPPDIITYSILLDGLCKYGKLEKALVVFEYL-QKSKMEPDIYTYNIMIEGMCKAGKVEDG 519
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
++ + +GV P + +Y+T+I+ C + ++A F+EM + G P ++ L +A
Sbjct: 520 WDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRA 579
Query: 301 -LRD 303
LRD
Sbjct: 580 RLRD 583
Score = 141 bits (355), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 141/276 (51%), Gaps = 1/276 (0%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G + +L + +++ LCK ++ A + KM+K + + D+ YT +++ KN+
Sbjct: 215 GCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDA 274
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
++ EM + G P+VV+Y +I C+ R+ +A L +M P+ F LI+
Sbjct: 275 LNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDA 334
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
E +L EA + + + KR +P+ TY++++ +C R+++A M + M PN
Sbjct: 335 FVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 394
Query: 185 TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244
TY+ ++ KA R EE +F+ MS++ TV TY +++ DMA +I+
Sbjct: 395 VVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTV-TYNTLIQGLFQAGDCDMAQKIF 453
Query: 245 DEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQ 280
+M + GV P + YS L++ LC KL+ A F+
Sbjct: 454 KKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFE 489
Score = 137 bits (346), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 85/312 (27%), Positives = 144/312 (46%), Gaps = 6/312 (1%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M + +L +N LI+ C+ + A V KM K ++PDI + + LL G+ K
Sbjct: 106 MQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKR 165
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ + +M ++P+ V++ +I+ + EAV L M A C+P + T
Sbjct: 166 ISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGT 225
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
++NGL + AL + +K E + Y ++ A C +NDA + EM G
Sbjct: 226 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKG 285
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
I PN TY+ ++ L GR +A + M + P V T+ ++ F ++ A
Sbjct: 286 IRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK-INPNVVTFSALIDAFVKEGKLVEA 344
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+++DEM R + P + YS+LIN C D+LD+A F+ M+ P ++ L +
Sbjct: 345 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKG 404
Query: 301 L-----RDEGME 307
+EGME
Sbjct: 405 FCKAKRVEEGME 416
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 143/297 (48%), Gaps = 1/297 (0%)
Query: 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMK 72
F+ LID K + A++++D+M KR DPDI +Y+ L+ G+ L ++ M
Sbjct: 328 FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMI 387
Query: 73 DDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132
P+VV+Y +I C AKR +E +ELFREM + + TLI GL
Sbjct: 388 SKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCD 447
Query: 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVL 192
A + F + G P+ TY+ ++ C ++ A + + ++K + P+ TY+I++
Sbjct: 448 MAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMI 507
Query: 193 HHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV 252
+ KAG+ E+ + +F +S K G +P V Y ++ FC + A ++ EMK G
Sbjct: 508 EGMCKAGKVEDGWDLFCSLSLK-GVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGT 566
Query: 253 LPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEET 309
LP Y+TLI + + + + +EM G S + L D +E++
Sbjct: 567 LPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHDGRLEKS 623
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 139/289 (48%), Gaps = 1/289 (0%)
Query: 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVY 68
+ +FN+L+ + K + + ++M+ R D+ SY IL+ + ++ L V
Sbjct: 79 SIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVL 138
Query: 69 REMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSE 128
+M G+EPD+V+ ++N +C KR EAV L +M +P+ F TLI+GL
Sbjct: 139 GKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLH 198
Query: 129 KRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTY 188
+ SEA+ + RG +P+ TY VV C I+ A ++ +M K I + Y
Sbjct: 199 NKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIY 258
Query: 189 DIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMK 248
++ L +A ++F M K G P V TY ++R C + A R+ +M
Sbjct: 259 TTIIDALCNYKNVNDALNLFTEMDNK-GIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 317
Query: 249 ARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNL 297
R + P + +S LI++ E KL +A K + EM+ I P +S+L
Sbjct: 318 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 366
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 154/312 (49%), Gaps = 1/312 (0%)
Query: 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMK 72
FN LI L A + D+M R PD+ +Y ++ G ++ ++ + ++M+
Sbjct: 188 FNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKME 247
Query: 73 DDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132
E DVV Y +I+A C+ K ++A+ LF EM+ +P+ + +LI L + R S
Sbjct: 248 KGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWS 307
Query: 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVL 192
+A + +R P T++A++ A+ ++ +A ++ DEM K I P+ TY ++
Sbjct: 308 DASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLI 367
Query: 193 HHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV 252
+ R +EA +F+ M K P V TY +++ FC +V+ M ++ EM RG+
Sbjct: 368 NGFCMHDRLDEAKHMFELMISKD-CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGL 426
Query: 253 LPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVV 312
+ Y+TLI L D A K F++M+ G+ P +S L L G E A+V
Sbjct: 427 VGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALV 486
Query: 313 LAQKIDKLRKTP 324
+ + + K + P
Sbjct: 487 VFEYLQKSKMEP 498
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 129/280 (46%), Gaps = 1/280 (0%)
Query: 26 VERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGI 85
++ A ++F +M + R P I + LL + + + M++ D+ SY I
Sbjct: 61 LDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 120
Query: 86 MINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRG 145
+IN C + A+ + +M +P +L+NG KR+SEA+ Q
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 180
Query: 146 FEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAY 205
++P T+N ++ + ++A ++D M G P+ TY V++ L K G + A
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 240
Query: 206 SVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINS 265
S+ K+M K E V Y ++ C V+ A+ ++ EM +G+ P + Y++LI
Sbjct: 241 SLLKKM-EKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 299
Query: 266 LCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 305
LC+ + DA + +M++ I P FS L A EG
Sbjct: 300 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEG 339
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 116/248 (46%), Gaps = 40/248 (16%)
Query: 95 RYDEAVELFREMEATNCKPSPHI------------------------------------- 117
+ D+AV+LF EM +P P I
Sbjct: 60 KLDDAVDLFGEM--VQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYS 117
Query: 118 FCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMR 177
+ LIN +L AL G+ K G+EP+ T ++++ YC RI++A ++D+M
Sbjct: 118 YNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMF 177
Query: 178 KCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQV 237
PNT T++ ++H L + EA ++ RM + G +P + TY VV C +
Sbjct: 178 VMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAR-GCQPDLFTYGTVVNGLCKRGDI 236
Query: 238 DMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNL 297
D+A+ + +M+ + + +Y+T+I++LC+ ++DA F EM + GIRP +++L
Sbjct: 237 DLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSL 296
Query: 298 KQALRDEG 305
+ L + G
Sbjct: 297 IRCLCNYG 304
Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 80/153 (52%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G+ ++ ++ L+D LCK +E+A VF+ ++K + +PDI +Y I++EG + +
Sbjct: 460 GVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDG 519
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
+++ + G +P+V+ Y MI+ C +EA LFREM+ P+ + TLI
Sbjct: 520 WDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRA 579
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVV 157
+ + + + + + GF +A T + V+
Sbjct: 580 RLRDGDKAASAELIKEMRSCGFVGDASTISMVI 612
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 86/190 (45%), Gaps = 1/190 (0%)
Query: 130 RLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYD 189
+L +A+ FG+ + P +N ++ A + + + + M+ I + +Y+
Sbjct: 60 KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYN 119
Query: 190 IVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKA 249
I+++ + + A +V +M K G EP + T ++ +C+ ++ A+ + D+M
Sbjct: 120 ILINCFCRRSQLPLALAVLGKM-MKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFV 178
Query: 250 RGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEET 309
P ++TLI+ L +K +A M+ G +P + + L G +
Sbjct: 179 MEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDL 238
Query: 310 AVVLAQKIDK 319
A+ L +K++K
Sbjct: 239 ALSLLKKMEK 248
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G+K + + +I C+ E A +F +MK+ P+ +Y L+ + + +
Sbjct: 530 GVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAAS 589
Query: 65 NEVYREMKDDGFEPDVVSYGIMIN 88
E+ +EM+ GF D + ++IN
Sbjct: 590 AELIKEMRSCGFVGDASTISMVIN 613
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 150 bits (380), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 155/306 (50%), Gaps = 3/306 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M+ +G + F+ +I L + R AQ FD +K R F+PD+ YT L+ GW +
Sbjct: 212 MEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDR-FEPDVIVYTNLVRGWCRAGE 270
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ +V++EMK G EP+V +Y I+I+A C + A ++F +M + C P+ F
Sbjct: 271 ISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNN 330
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
L+ R + LQ + Q KK G EP+ TYN ++ A+C + +A ++++ M K
Sbjct: 331 LMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKK 390
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
N T++ + ++ K A+ ++ +M + EP TY I++RMF + DM
Sbjct: 391 CEVNASTFNTIFRYIEKKRDVNGAHRMYSKM-MEAKCEPNTVTYNILMRMFVGSKSTDMV 449
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIG-IRPPGQLFSNLKQ 299
+++ EM + V P ++ Y L+ C ++A K F+EM++ + P L+ +
Sbjct: 450 LKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLA 509
Query: 300 ALRDEG 305
LR G
Sbjct: 510 QLRRAG 515
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 150/315 (47%), Gaps = 5/315 (1%)
Query: 2 DKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNL 61
D + K P +N +ID K R + A + D MK R + I+++TIL+ + +
Sbjct: 144 DDYDHKSPHP-YNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLA 202
Query: 62 LSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTL 121
+ M+D G PD +++ I+I+ +R EA F ++ +P ++ L
Sbjct: 203 SEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLK-DRFEPDVIVYTNL 261
Query: 122 INGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGI 181
+ G +SEA + F + K G EP TY+ V+ A C +I+ A+ + +M G
Sbjct: 262 VRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGC 321
Query: 182 GPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAM 241
PN T++ ++ +KAGRTE+ V+ +M +K G EP TY ++ C + ++ A+
Sbjct: 322 APNAITFNNLMRVHVKAGRTEKVLQVYNQM-KKLGCEPDTITYNFLIEAHCRDENLENAV 380
Query: 242 RIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQAL 301
++ + M + ++T+ + + ++ A + + +M++ P ++ L +
Sbjct: 381 KVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMF 440
Query: 302 RDEGMEETAVVLAQK 316
G + T +VL K
Sbjct: 441 --VGSKSTDMVLKMK 453
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 117/249 (46%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G++ + ++ +ID LC+ + RA +VF M P+ ++ L+ + +
Sbjct: 285 GIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKV 344
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
+VY +MK G EPD ++Y +I AHC + + AV++ M C+ + F T+
Sbjct: 345 LQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRY 404
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
+ ++ ++ A + + + + EP TYN ++ + S + +M EM + PN
Sbjct: 405 IEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPN 464
Query: 185 TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244
TY +++ G AY +FK M + P++S YE+V+ Q+ +
Sbjct: 465 VNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELV 524
Query: 245 DEMKARGVL 253
++M +G++
Sbjct: 525 EKMIQKGLV 533
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 97/211 (45%), Gaps = 2/211 (0%)
Query: 114 SPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMM 173
SPH + +I+ G ++ A K R E T+ ++ Y + ++A
Sbjct: 150 SPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCF 209
Query: 174 DEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCY 233
+ M G P+ + IV+ +L + R EA S F S K EP V Y +VR +C
Sbjct: 210 NRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFD--SLKDRFEPDVIVYTNLVRGWCR 267
Query: 234 NAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQL 293
++ A +++ EMK G+ P ++ YS +I++LC ++ A F +MLD G P
Sbjct: 268 AGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAIT 327
Query: 294 FSNLKQALRDEGMEETAVVLAQKIDKLRKTP 324
F+NL + G E + + ++ KL P
Sbjct: 328 FNNLMRVHVKAGRTEKVLQVYNQMKKLGCEP 358
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 150 bits (379), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 151/297 (50%), Gaps = 1/297 (0%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G++ ++ ++ L+D LCK+ A+++FD M KR P+I +Y LL+G+ + L+ M
Sbjct: 296 GVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEM 355
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
+ + M +G PD + I+I A+ + D+A+ +F +M P+ + +I
Sbjct: 356 HGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGI 415
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
L R+ +A+ +F Q G P YN+++ C + A ++ EM GI N
Sbjct: 416 LCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLN 475
Query: 185 TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244
T ++ ++ K GR E+ +F+ M R G +P V TY ++ +C ++D AM++
Sbjct: 476 TIFFNSIIDSHCKEGRVIESEKLFELMVR-IGVKPNVITYNTLINGYCLAGKMDEAMKLL 534
Query: 245 DEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQAL 301
M + G+ P YSTLIN C +++DA F+EM G+ P ++ + Q L
Sbjct: 535 SGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGL 591
Score = 145 bits (366), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/304 (27%), Positives = 147/304 (48%), Gaps = 4/304 (1%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFD---PDIKSYTILLEGWGQ 57
M + G + +N L+ LC + A E+ M R PD+ SYT ++ G+ +
Sbjct: 149 MTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFK 208
Query: 58 QKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHI 117
+ + Y EM D G PDVV+Y +I A C A+ D+A+E+ M P
Sbjct: 209 EGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMT 268
Query: 118 FCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMR 177
+ ++++G S + EA+ F + + G EP+ TY+ ++ C + R +A ++ D M
Sbjct: 269 YNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMT 328
Query: 178 KCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQV 237
K G+ P TY +L G E + + M R G P + I++ + +V
Sbjct: 329 KRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN-GIHPDHYVFSILICAYAKQGKV 387
Query: 238 DMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNL 297
D AM ++ +M+ +G+ P Y +I LC +++DA YF++M+D G+ P ++++L
Sbjct: 388 DQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSL 447
Query: 298 KQAL 301
L
Sbjct: 448 IHGL 451
Score = 138 bits (348), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 94/331 (28%), Positives = 156/331 (47%), Gaps = 8/331 (2%)
Query: 1 MDKFGLKQELPD---FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQ 57
M + G + PD + LI C++ ++ + K+ F D ++T LL+G
Sbjct: 75 MARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCA 134
Query: 58 QKNLL-SMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPH 116
K +M+ V R M + G P+V SY I++ C R EA+EL M SP
Sbjct: 135 DKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPP 194
Query: 117 ---IFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMM 173
+ T+ING E +A + + RG P+ TYN+++ A C + ++ A ++
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVL 254
Query: 174 DEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCY 233
+ M K G+ P+ TY+ +LH +G+ +EA K+M R G EP V TY +++ C
Sbjct: 255 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKM-RSDGVEPDVVTYSLLMDYLCK 313
Query: 234 NAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQL 293
N + A +I+D M RG+ P + Y TL+ + L + M+ GI P +
Sbjct: 314 NGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYV 373
Query: 294 FSNLKQALRDEGMEETAVVLAQKIDKLRKTP 324
FS L A +G + A+++ K+ + P
Sbjct: 374 FSILICAYAKQGKVDQAMLVFSKMRQQGLNP 404
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 130/272 (47%), Gaps = 2/272 (0%)
Query: 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMK 72
FN +ID+ CK V ++++F+ M + P++ +Y L+ G+ + ++ M
Sbjct: 479 FNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMV 538
Query: 73 DDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132
G +P+ V+Y +IN +C R ++A+ LF+EME++ P + ++ GL +R +
Sbjct: 539 SVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTA 598
Query: 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVL 192
A + + + + G + E TYN ++ C + +DA +M + + RT++I++
Sbjct: 599 AAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMI 658
Query: 193 HHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV 252
L+K GR +EA +F S G P TY ++ ++ +++ M+ G
Sbjct: 659 DALLKVGRNDEAKDLFVAFSSN-GLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGC 717
Query: 253 LPVMHMYSTLINSLCHEDKLDDACKYFQEMLD 284
M + ++ L ++ A Y M+D
Sbjct: 718 TVDSGMLNFIVRELLQRGEITRAGTYLS-MID 748
Score = 105 bits (262), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 135/293 (46%), Gaps = 1/293 (0%)
Query: 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMK 72
+N LI LC ERA+E+ +M R + + +++ ++ ++ +++ M
Sbjct: 444 YNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMV 503
Query: 73 DDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132
G +P+V++Y +IN +C A + DEA++L M + KP+ + TLING R+
Sbjct: 504 RIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRME 563
Query: 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVL 192
+AL F + + G P+ TYN ++ + R A + + + G TY+I+L
Sbjct: 564 DALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIIL 623
Query: 193 HHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV 252
H L K T++A +F+ + + T+ I++ + D A ++ + G+
Sbjct: 624 HGLCKNKLTDDALQMFQNLCLMD-LKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGL 682
Query: 253 LPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 305
+P Y + ++ + L++ + F M D G + + + + L G
Sbjct: 683 VPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRG 735
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 124/285 (43%), Gaps = 7/285 (2%)
Query: 27 ERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKD--DGFEPDVVSYG 84
E A+ VFD++ +R I L + +++ R + D PD+ +YG
Sbjct: 32 EDARHVFDELLRRGRGASIYGLNRALADVARDSPAAAVSRYNRMARAGADEVTPDLCTYG 91
Query: 85 IMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQF-FGQSKK 143
I+I C A R D + + F L+ GL ++KR S+A+ + +
Sbjct: 92 ILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTE 151
Query: 144 RGFEPEAPTYNAVVGAYCWSMRINDAY---RMMDEMRKCGIGPNTRTYDIVLHHLIKAGR 200
G P +YN ++ C R +A MM + R G P+ +Y V++ K G
Sbjct: 152 LGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGD 211
Query: 201 TEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYS 260
+++AYS + M + G P V TY ++ C +D AM + + M GV+P Y+
Sbjct: 212 SDKAYSTYHEMLDR-GILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYN 270
Query: 261 TLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 305
++++ C + +A + ++M G+ P +S L L G
Sbjct: 271 SILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNG 315
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 98/211 (46%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M + G+K + +N LI+ C + ++ A ++ M P+ +Y+ L+ G+ +
Sbjct: 502 MVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISR 561
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ +++EM+ G PD+++Y I++ +R A EL+ + + + +
Sbjct: 562 MEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNI 621
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
+++GL K +ALQ F + EA T+N ++ A R ++A + G
Sbjct: 622 ILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNG 681
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRM 211
+ PN TY ++ ++I G EE +F M
Sbjct: 682 LVPNYWTYRLMAENIIGQGLLEELDQLFLSM 712
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 93/214 (43%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M GLK ++ LI+ CK +E A +F +M+ PDI +Y I+L+G Q +
Sbjct: 537 MVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRR 596
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ E+Y + + G + ++ +Y I+++ C K D+A+++F+ + + K F
Sbjct: 597 TAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNI 656
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
+I+ L R EA F G P TY + + + ++ M G
Sbjct: 657 MIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNG 716
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRK 214
++ + ++ L++ G A + + K
Sbjct: 717 CTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEK 750
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 168/326 (51%), Gaps = 1/326 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
+ +FG + + LID CK +E+A+++F +M K + ++YT+L+ G +
Sbjct: 189 LTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGV 248
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
E+Y +M++DG P++ +Y ++N C R +A ++F EM + + T
Sbjct: 249 KKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNT 308
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LI GL E +L+EA + Q K G P TYN ++ +C ++ A + +++ G
Sbjct: 309 LIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRG 368
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+ P+ TY+I++ + G T A + K M + G +P+ TY I++ F + ++ A
Sbjct: 369 LSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEER-GIKPSKVTYTILIDTFARSDNMEKA 427
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+++ M+ G++P +H YS LI+ C + ++++A + F+ M++ P +++ +
Sbjct: 428 IQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILG 487
Query: 301 LRDEGMEETAVVLAQKIDKLRKTPLV 326
EG A+ L +++++ P V
Sbjct: 488 YCKEGSSYRALKLLKEMEEKELAPNV 513
Score = 142 bits (358), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 153/303 (50%), Gaps = 1/303 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M + G+ L +N +++ LCK + A +VFD+M++R +I +Y L+ G ++
Sbjct: 259 MQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMK 318
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L N+V +MK DG P++++Y +I+ C + +A+ L R++++ PS +
Sbjct: 319 LNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNI 378
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
L++G + S A + + ++RG +P TY ++ + S + A ++ M + G
Sbjct: 379 LVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELG 438
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+ P+ TY +++H G+ EA +FK M K EP Y ++ +C A
Sbjct: 439 LVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEK-NCEPNEVIYNTMILGYCKEGSSYRA 497
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+++ EM+ + + P + Y +I LC E K +A + ++M+D GI P + S + +A
Sbjct: 498 LKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSILSLISRA 557
Query: 301 LRD 303
D
Sbjct: 558 KND 560
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 155/309 (50%), Gaps = 2/309 (0%)
Query: 12 DFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREM 71
F LI C++ +E++ ++ ++ + F P++ YT L++G ++ + +++ EM
Sbjct: 165 SFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEM 224
Query: 72 KDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRL 131
G + +Y ++IN + E++ +M+ P+ + + ++N L + R
Sbjct: 225 GKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRT 284
Query: 132 SEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIV 191
+A Q F + ++RG TYN ++G C M++N+A +++D+M+ GI PN TY+ +
Sbjct: 285 KDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTL 344
Query: 192 LHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG 251
+ G+ +A S+ + + + G P++ TY I+V FC A ++ EM+ RG
Sbjct: 345 IDGFCGVGKLGKALSLCRDLKSR-GLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERG 403
Query: 252 VLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG-MEETA 310
+ P Y+ LI++ D ++ A + M ++G+ P +S L +G M E +
Sbjct: 404 IKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEAS 463
Query: 311 VVLAQKIDK 319
+ ++K
Sbjct: 464 RLFKSMVEK 472
Score = 128 bits (321), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 148/312 (47%), Gaps = 2/312 (0%)
Query: 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMK 72
FN L+ + S + F++ K + D+ S+ IL++G + + ++ E+
Sbjct: 132 FNYLLTFVVGSSSFNQWWSFFNE-NKSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELT 190
Query: 73 DDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132
+ GF P+VV Y +I+ C ++A +LF EM + + LINGL
Sbjct: 191 EFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKK 250
Query: 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVL 192
+ + + + ++ G P TYN V+ C R DA+++ DEMR+ G+ N TY+ ++
Sbjct: 251 QGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLI 310
Query: 193 HHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV 252
L + + EA V +M + G P + TY ++ FC ++ A+ + ++K+RG+
Sbjct: 311 GGLCREMKLNEANKVVDQM-KSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGL 369
Query: 253 LPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVV 312
P + Y+ L++ C + A K +EM + GI+P ++ L E A+
Sbjct: 370 SPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQ 429
Query: 313 LAQKIDKLRKTP 324
L +++L P
Sbjct: 430 LRLSMEELGLVP 441
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/321 (23%), Positives = 142/321 (44%), Gaps = 42/321 (13%)
Query: 48 YTILLEGWGQQKNLLSMNEVYREMKDDGFEP----------------------------- 78
Y +++ + Q ++L + EM D+GF P
Sbjct: 97 YEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENK 156
Query: 79 -----DVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSE 133
DV S+GI+I C A +++ +L E+ P+ I+ TLI+G + + +
Sbjct: 157 SKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEK 216
Query: 134 ALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLH 193
A F + K G TY ++ + + M ++M++ G+ PN TY+ V++
Sbjct: 217 AKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMN 276
Query: 194 HLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL 253
L K GRT++A+ VF M R+ G + TY ++ C +++ A ++ D+MK+ G+
Sbjct: 277 QLCKDGRTKDAFQVFDEM-RERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGIN 335
Query: 254 PVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVL 313
P + Y+TLI+ C KL A +++ G+ P ++ L +G A +
Sbjct: 336 PNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKM 395
Query: 314 AQKID-------KLRKTPLVD 327
++++ K+ T L+D
Sbjct: 396 VKEMEERGIKPSKVTYTILID 416
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 149 bits (376), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 156/318 (49%), Gaps = 4/318 (1%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M KF + + LI H + +F +M++ ++P + +T L+ G+ ++
Sbjct: 159 MRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGR 218
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ S + EMK + D+V Y + I++ + D A + F E+EA KP + +
Sbjct: 219 VDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTS 278
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
+I L RL EA++ F +K P YN ++ Y + + ++AY +++ R G
Sbjct: 279 MIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKG 338
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
P+ Y+ +L L K G+ +EA VF+ M K P +STY I++ M C ++D A
Sbjct: 339 SIPSVIAYNCILTCLRKMGKVDEALKVFEEM--KKDAAPNLSTYNILIDMLCRAGKLDTA 396
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQL-FSNLKQ 299
+ D M+ G+ P + + +++ LC KLD+AC F+EM D + P ++ F +L
Sbjct: 397 FELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEM-DYKVCTPDEITFCSLID 455
Query: 300 ALRDEGMEETAVVLAQKI 317
L G + A + +K+
Sbjct: 456 GLGKVGRVDDAYKVYEKM 473
Score = 128 bits (322), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 91/347 (26%), Positives = 162/347 (46%), Gaps = 37/347 (10%)
Query: 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMK 72
+N ++ L K V+ A +VF++MKK P++ +Y IL++ + L + E+ M+
Sbjct: 346 YNCILTCLRKMGKVDEALKVFEEMKKDA-APNLSTYNILIDMLCRAGKLDTAFELRDSMQ 404
Query: 73 DDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132
G P+V + IM++ C +++ DEA +F EM+ C P FC+LI+GLG R+
Sbjct: 405 KAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVD 464
Query: 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRM-------------------M 173
+A + + + + Y +++ + R D +++ M
Sbjct: 465 DAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYM 524
Query: 174 DEMRKCG----------------IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGT 217
D M K G P+ R+Y I++H LIKAG E Y +F M ++ G
Sbjct: 525 DCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSM-KEQGC 583
Query: 218 EPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACK 277
Y IV+ FC +V+ A ++ +EMK +G P + Y ++I+ L D+LD+A
Sbjct: 584 VLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYM 643
Query: 278 YFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTP 324
F+E I ++S+L G + A ++ +++ + TP
Sbjct: 644 LFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTP 690
Score = 125 bits (314), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 161/324 (49%), Gaps = 1/324 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M K GL + N ++D LCKS+ ++ A +F++M + PD ++ L++G G+
Sbjct: 403 MQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGR 462
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ +VY +M D + + Y +I + R ++ +++++M NC P + T
Sbjct: 463 VDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNT 522
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
++ + + F + K R F P+A +Y+ ++ + N+ Y + M++ G
Sbjct: 523 YMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQG 582
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+TR Y+IV+ K G+ +AY + + M K G EPTV TY V+ ++D A
Sbjct: 583 CVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTK-GFEPTVVTYGSVIDGLAKIDRLDEA 641
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+++E K++ + + +YS+LI+ ++D+A +E++ G+ P +++L A
Sbjct: 642 YMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDA 701
Query: 301 LRDEGMEETAVVLAQKIDKLRKTP 324
L A+V Q + +L+ TP
Sbjct: 702 LVKAEEINEALVCFQSMKELKCTP 725
Score = 125 bits (314), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 154/309 (49%), Gaps = 5/309 (1%)
Query: 10 LPD---FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNE 66
+PD ++ LI L K+ E+F MK++ D ++Y I+++G+ + + +
Sbjct: 549 VPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQ 608
Query: 67 VYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLG 126
+ EMK GFEP VV+YG +I+ R DEA LF E ++ + + I+ +LI+G G
Sbjct: 609 LLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFG 668
Query: 127 SEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTR 186
R+ EA + ++G P T+N+++ A + IN+A M++ PN
Sbjct: 669 KVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQV 728
Query: 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDE 246
TY I+++ L K + +A+ ++ M +K G +P+ +Y ++ + A ++D
Sbjct: 729 TYGILINGLCKVRKFNKAFVFWQEM-QKQGMKPSTISYTTMISGLAKAGNIAEAGALFDR 787
Query: 247 MKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQAL-RDEG 305
KA G +P Y+ +I L + ++ DA F+E G+ + L L +++
Sbjct: 788 FKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTLHKNDC 847
Query: 306 MEETAVVLA 314
+E+ A+V A
Sbjct: 848 LEQAAIVGA 856
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 108/210 (51%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G + + + +ID L K ++ A +F++ K +R + ++ Y+ L++G+G+ +
Sbjct: 617 GFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEA 676
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
+ E+ G P++ ++ +++A A+ +EA+ F+ M+ C P+ + LING
Sbjct: 677 YLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILING 736
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
L ++ ++A F+ + +K+G +P +Y ++ + I +A + D + G P+
Sbjct: 737 LCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPD 796
Query: 185 TRTYDIVLHHLIKAGRTEEAYSVFKRMSRK 214
+ Y+ ++ L R +A+S+F+ R+
Sbjct: 797 SACYNAMIEGLSNGNRAMDAFSLFEETRRR 826
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 4/164 (2%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
GL L +N L+D L K+ + A F MK+ + P+ +Y IL+ G + +
Sbjct: 687 GLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKA 746
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
++EM+ G +P +SY MI+ A EA LF +A P + +I G
Sbjct: 747 FVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEG 806
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIND 168
L + R +A F ++++RG P +N ++ ND
Sbjct: 807 LSNGNRAMDAFSLFEETRRRGL----PIHNKTCVVLLDTLHKND 846
Score = 35.0 bits (79), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 32/76 (42%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M K G+K + +I L K+ ++ A +FD+ K PD Y ++EG
Sbjct: 753 MQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNR 812
Query: 61 LLSMNEVYREMKDDGF 76
+ ++ E + G
Sbjct: 813 AMDAFSLFEETRRRGL 828
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 149 bits (376), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 150/281 (53%), Gaps = 7/281 (2%)
Query: 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMK 72
+ ++ +CKS A E+ KM++R+ D Y+I+++G + +L + ++ EM+
Sbjct: 215 YGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEME 274
Query: 73 DDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132
GF+ D++ Y +I C A R+D+ +L R+M P F LI+ E +L
Sbjct: 275 IKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLR 334
Query: 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVL 192
EA + + +RG P+ TY +++ +C +++ A M+D M G GPN RT++I++
Sbjct: 335 EAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILI 394
Query: 193 HHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV 252
+ KA ++ +F++MS + TV TY +++ FC ++++A ++ EM +R V
Sbjct: 395 NGYCKANLIDDGLELFRKMSLRGVVADTV-TYNTLIQGFCELGKLEVAKELFQEMVSRRV 453
Query: 253 LPVMHMYSTLINSLCHEDKLDDACKYFQEM------LDIGI 287
P + Y L++ LC + + A + F+++ LDIGI
Sbjct: 454 RPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGI 494
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/322 (25%), Positives = 153/322 (47%), Gaps = 1/322 (0%)
Query: 3 KFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLL 62
K G + + F+ LI+ LC V A E+ D+M + P + + L+ G +
Sbjct: 135 KLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVS 194
Query: 63 SMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLI 122
+ M + GF+P+ V+YG ++ C + + A+EL R+ME K + +I
Sbjct: 195 DAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIII 254
Query: 123 NGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIG 182
+GL + L A F + + +GF+ + Y ++ +C++ R +D +++ +M K I
Sbjct: 255 DGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKIT 314
Query: 183 PNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMR 242
P+ + ++ +K G+ EA + K M ++ G P TY ++ FC Q+D A
Sbjct: 315 PDVVAFSALIDCFVKEGKLREAEELHKEMIQR-GISPDTVTYTSLIDGFCKENQLDKANH 373
Query: 243 IWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALR 302
+ D M ++G P + ++ LIN C + +DD + F++M G+ ++ L Q
Sbjct: 374 MLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFC 433
Query: 303 DEGMEETAVVLAQKIDKLRKTP 324
+ G E A L Q++ R P
Sbjct: 434 ELGKLEVAKELFQEMVSRRVRP 455
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 154/319 (48%), Gaps = 1/319 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M+ G K ++ + LI C + + ++ M KR+ PD+ +++ L++ + ++
Sbjct: 273 MEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGK 332
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L E+++EM G PD V+Y +I+ C + D+A + M + C P+ F
Sbjct: 333 LREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNI 392
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LING + + L+ F + RG + TYN ++ +C ++ A + EM
Sbjct: 393 LINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRR 452
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+ P+ +Y I+L L G E+A +F+++ K E + Y I++ C ++VD A
Sbjct: 453 VRPDIVSYKILLDGLCDNGEPEKALEIFEKI-EKSKMELDIGIYNIIIHGMCNASKVDDA 511
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
++ + +GV P + Y+ +I LC + L +A F++M + G P G ++ L +A
Sbjct: 512 WDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRA 571
Query: 301 LRDEGMEETAVVLAQKIDK 319
EG + L ++I +
Sbjct: 572 HLGEGDATKSAKLIEEIKR 590
Score = 135 bits (340), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 89/319 (27%), Positives = 150/319 (47%), Gaps = 1/319 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M + G K L N L++ LC + V A + D+M + F P+ +Y +L+ +
Sbjct: 168 MVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQ 227
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
E+ R+M++ + D V Y I+I+ C D A LF EME K I+ T
Sbjct: 228 TALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTT 287
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LI G R + + KR P+ ++A++ + ++ +A + EM + G
Sbjct: 288 LIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRG 347
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
I P+T TY ++ K + ++A + M K G P + T+ I++ +C +D
Sbjct: 348 ISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSK-GCGPNIRTFNILINGYCKANLIDDG 406
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+ ++ +M RGV+ Y+TLI C KL+ A + FQEM+ +RP + L
Sbjct: 407 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDG 466
Query: 301 LRDEGMEETAVVLAQKIDK 319
L D G E A+ + +KI+K
Sbjct: 467 LCDNGEPEKALEIFEKIEK 485
Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 136/277 (49%), Gaps = 1/277 (0%)
Query: 29 AQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMIN 88
A ++F +M + R P + ++ L + K + ++ ++M+ G ++ + IMIN
Sbjct: 56 AVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMIN 115
Query: 89 AHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEP 148
C ++ A ++ +P F TLINGL E R+SEAL+ + + G +P
Sbjct: 116 CCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKP 175
Query: 149 EAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVF 208
T NA+V C + +++DA ++D M + G PN TY VL + K+G+T A +
Sbjct: 176 TLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELL 235
Query: 209 KRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCH 268
++M + V Y I++ C + +D A +++EM+ +G + +Y+TLI C+
Sbjct: 236 RKMEERKIKLDAVK-YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCY 294
Query: 269 EDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 305
+ DD K ++M+ I P FS L EG
Sbjct: 295 AGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEG 331
Score = 118 bits (296), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 124/247 (50%), Gaps = 1/247 (0%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G+ + + LID CK +++A + D M + P+I+++ IL+ G+ + +
Sbjct: 347 GISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDG 406
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
E++R+M G D V+Y +I C + + A ELF+EM + +P + L++G
Sbjct: 407 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDG 466
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
L +AL+ F + +K E + YN ++ C + +++DA+ + + G+ P+
Sbjct: 467 LCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPD 526
Query: 185 TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244
+TY+I++ L K G EA +F++M + G P TY I++R + ++
Sbjct: 527 VKTYNIMIGGLCKKGSLSEADLLFRKM-EEDGHSPNGCTYNILIRAHLGEGDATKSAKLI 585
Query: 245 DEMKARG 251
+E+K G
Sbjct: 586 EEIKRCG 592
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/312 (21%), Positives = 143/312 (45%), Gaps = 6/312 (1%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M+ G+ L + +I+ C+ R + A K+ K ++PD +++ L+ G +
Sbjct: 98 MELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGR 157
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ E+ M + G +P +++ ++N C + +AV L M T +P+ +
Sbjct: 158 VSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGP 217
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
++ + + + A++ + ++R + +A Y+ ++ C +++A+ + +EM G
Sbjct: 218 VLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 277
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+ Y ++ AGR ++ + + M ++ T P V + ++ F ++ A
Sbjct: 278 FKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKIT-PDVVAFSALIDCFVKEGKLREA 336
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNL--- 297
+ EM RG+ P Y++LI+ C E++LD A M+ G P + F+ L
Sbjct: 337 EELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILING 396
Query: 298 --KQALRDEGME 307
K L D+G+E
Sbjct: 397 YCKANLIDDGLE 408
Score = 101 bits (251), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 104/201 (51%), Gaps = 1/201 (0%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G+ + +N LI C+ +E A+E+F +M RR PDI SY ILL+G
Sbjct: 417 GVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKA 476
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
E++ +++ E D+ Y I+I+ C+A + D+A +LF + KP + +I G
Sbjct: 477 LEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGG 536
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
L + LSEA F + ++ G P TYN ++ A+ + ++++E+++CG +
Sbjct: 537 LCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVD 596
Query: 185 TRTYDIVLHHLIKAGRTEEAY 205
T +V+ ++ GR ++++
Sbjct: 597 ASTVKMVV-DMLSDGRLKKSF 616
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 115/265 (43%), Gaps = 40/265 (15%)
Query: 97 DEAVELFREMEATNCKPSPHI-------------------------------------FC 119
D+AV+LF+EM T +P P +
Sbjct: 54 DDAVDLFQEM--TRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLS 111
Query: 120 TLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179
+IN ++LS A G+ K G+EP+ T++ ++ C R+++A ++D M +
Sbjct: 112 IMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEM 171
Query: 180 GIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDM 239
G P T + +++ L G+ +A + RM + G +P TY V+++ C + Q +
Sbjct: 172 GHKPTLITLNALVNGLCLNGKVSDAVLLIDRMV-ETGFQPNEVTYGPVLKVMCKSGQTAL 230
Query: 240 AMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQ 299
AM + +M+ R + YS +I+ LC + LD+A F EM G + +++ L +
Sbjct: 231 AMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIR 290
Query: 300 ALRDEGMEETAVVLAQKIDKLRKTP 324
G + L + + K + TP
Sbjct: 291 GFCYAGRWDDGAKLLRDMIKRKITP 315
>sp|P0C8Q3|PP326_ARATH Pentatricopeptide repeat-containing protein At4g19890
OS=Arabidopsis thaliana GN=At4g19890 PE=2 SV=1
Length = 701
Score = 148 bits (374), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 95/361 (26%), Positives = 163/361 (45%), Gaps = 49/361 (13%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEG-----W 55
M G K L +F LID LCK +++A E+ ++M + + P++ ++T L++G W
Sbjct: 278 MIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGW 337
Query: 56 GQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSP 115
++ L + V + D ++P+V +Y MI +C + + A LF M+ P+
Sbjct: 338 TEKAFRLFLKLV----RSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNV 393
Query: 116 HIFCTLING---LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRM 172
+ + TLING GS R E + G GF P TYNA + + C R +AY +
Sbjct: 394 NTYTTLINGHCKAGSFGRAYELMNLMGD---EGFMPNIYTYNAAIDSLCKKSRAPEAYEL 450
Query: 173 MDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKP----------------- 215
+++ CG+ + TY I++ K +A + F RM++
Sbjct: 451 LNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCR 510
Query: 216 -----------------GTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHM 258
G PT TY ++ +C +D+A++ + MK G +P
Sbjct: 511 QKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFT 570
Query: 259 YSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKID 318
Y +LI+ LC + +D+ACK ++ M+D G+ PP L A++L + +D
Sbjct: 571 YGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRNDSANAMILLEPLD 630
Query: 319 K 319
K
Sbjct: 631 K 631
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 134/300 (44%), Gaps = 2/300 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M GL N +++ + +E A+ VFD+M R PD SY +++ G +
Sbjct: 173 MQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRDGK 232
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ + M GF PD + +++ A C + A+ FR+M KP+ F +
Sbjct: 233 IQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTS 292
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRM-MDEMRKC 179
LI+GL + + +A + + + G++P T+ A++ C A+R+ + +R
Sbjct: 293 LIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSD 352
Query: 180 GIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDM 239
PN TY ++ K + A +F RM ++ G P V+TY ++ C
Sbjct: 353 TYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRM-KEQGLFPNVNTYTTLINGHCKAGSFGR 411
Query: 240 AMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQ 299
A + + M G +P ++ Y+ I+SLC + + +A + + G+ G ++ L Q
Sbjct: 412 AYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQ 471
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/348 (21%), Positives = 142/348 (40%), Gaps = 39/348 (11%)
Query: 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNE 66
K + + +I CK + RA+ +F +MK++ P++ +YT L+ G + + E
Sbjct: 355 KPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYE 414
Query: 67 VYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLG 126
+ M D+GF P++ +Y I++ C R EA EL + + + + LI
Sbjct: 415 LMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQC 474
Query: 127 SEKRLSEALQFFGQSKKRGFE-----------------------------------PEAP 151
+ +++AL FF + K GFE P
Sbjct: 475 KQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKE 534
Query: 152 TYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRM 211
TY +++ YC I+ A + M++ G P++ TY ++ L K +EA +++ M
Sbjct: 535 TYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAM 594
Query: 212 SRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDK 271
+ + P V+ + +C AM + + + + + + TL+ LC E K
Sbjct: 595 IDRGLSPPEVTRVTLAYE-YCKRNDSANAMILLEPLDKKLWIRTVR---TLVRKLCSEKK 650
Query: 272 LDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 319
+ A +FQ++L+ + A + G L ++I +
Sbjct: 651 VGVAALFFQKLLEKDSSADRVTLAAFTTACSESGKNNLVTDLTERISR 698
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 106/255 (41%), Gaps = 35/255 (13%)
Query: 70 EMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEK 129
+M++ G P ++ ++ + A +F EM P + ++ G +
Sbjct: 172 DMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRDG 231
Query: 130 RLSEALQFFGQSKKRGFEPEAPTYNAVVGAYC---------WSMR--------------- 165
++ EA ++ +RGF P+ T ++ A C W R
Sbjct: 232 KIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFT 291
Query: 166 -----------INDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRK 214
I A+ M++EM + G PN T+ ++ L K G TE+A+ +F ++ R
Sbjct: 292 SLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRS 351
Query: 215 PGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDD 274
+P V TY ++ +C +++ A ++ MK +G+ P ++ Y+TLIN C
Sbjct: 352 DTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGR 411
Query: 275 ACKYFQEMLDIGIRP 289
A + M D G P
Sbjct: 412 AYELMNLMGDEGFMP 426
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 110/243 (45%), Gaps = 4/243 (1%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G + +N ID+LCK A E+ +K + D +YTIL++ +Q ++
Sbjct: 423 GFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQA 482
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
+ M GFE D+ I+I A C K+ E+ LF+ + + P+ + ++I+
Sbjct: 483 LAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISC 542
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
E + AL++F K+ G P++ TY +++ C +++A ++ + M G+ P
Sbjct: 543 YCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPP 602
Query: 185 TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244
T + + K + A + + + +K + T +VR C +V +A +
Sbjct: 603 EVTRVTLAYEYCKRNDSANAMILLEPLDKKLW----IRTVRTLVRKLCSEKKVGVAALFF 658
Query: 245 DEM 247
++
Sbjct: 659 QKL 661
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 76/141 (53%), Gaps = 1/141 (0%)
Query: 165 RINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTY 224
R+N+A M+ +M+ G+ P++ T + VL ++ G E A +VF MS + G P S+Y
Sbjct: 162 RLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVR-GVVPDSSSY 220
Query: 225 EIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLD 284
+++V + ++ A R M RG +P + ++ +LC ++ A YF++M+D
Sbjct: 221 KLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMID 280
Query: 285 IGIRPPGQLFSNLKQALRDEG 305
+G +P F++L L +G
Sbjct: 281 LGFKPNLINFTSLIDGLCKKG 301
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 87/188 (46%), Gaps = 1/188 (0%)
Query: 130 RLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYD 189
RL+EA+ + +G P + T N V+ I A + DEM G+ P++ +Y
Sbjct: 162 RLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYK 221
Query: 190 IVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKA 249
+++ + G+ +EA M ++ G P +T +++ C N V+ A+ + +M
Sbjct: 222 LMVIGCFRDGKIQEADRWLTGMIQR-GFIPDNATCTLILTALCENGLVNRAIWYFRKMID 280
Query: 250 RGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEET 309
G P + +++LI+ LC + + A + +EM+ G +P + L L G E
Sbjct: 281 LGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEK 340
Query: 310 AVVLAQKI 317
A L K+
Sbjct: 341 AFRLFLKL 348
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 1/134 (0%)
Query: 191 VLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR 250
+L + + GR EA + M + G P+ T V+ + ++ A ++DEM R
Sbjct: 153 MLRNFSEIGRLNEAVGMVMDMQNQ-GLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVR 211
Query: 251 GVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETA 310
GV+P Y ++ + K+ +A ++ M+ G P + + AL + G+ A
Sbjct: 212 GVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRA 271
Query: 311 VVLAQKIDKLRKTP 324
+ +K+ L P
Sbjct: 272 IWYFRKMIDLGFKP 285
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 148 bits (373), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 153/304 (50%), Gaps = 2/304 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
MD G++ + +N LI LC A + M +R+ +P++ +++ L++ + ++
Sbjct: 282 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 341
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L+ ++Y EM +PD+ +Y +IN C R DEA +F M + +C P+ + T
Sbjct: 342 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNT 401
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LI G KR+ E ++ F + +RG TY ++ + + ++A + +M G
Sbjct: 402 LIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDG 461
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+ P+ TY I+L L G+ E A VF+ + R EP + TY I++ C +V+
Sbjct: 462 VLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSK-MEPDIYTYNIMIEGMCKAGKVEDG 520
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
++ + +GV P + Y+T+++ C + ++A F+EM + G P ++ L +A
Sbjct: 521 WDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRA 580
Query: 301 -LRD 303
LRD
Sbjct: 581 HLRD 584
Score = 145 bits (365), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 88/358 (24%), Positives = 162/358 (45%), Gaps = 34/358 (9%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M K G + ++ N L++ C + A + +M + + PD ++ L+ G +
Sbjct: 142 MMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNR 201
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ M G +PD+V+YGI++N C D A+ L ++ME +P I+ T
Sbjct: 202 ASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNT 261
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
+I+ L + K +++AL F + +G P TYN+++ C R +DA R++ +M +
Sbjct: 262 IIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK 321
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKP------------------------- 215
I PN T+ ++ +K G+ EA ++ M ++
Sbjct: 322 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 381
Query: 216 ---------GTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSL 266
P V TY +++ FC +VD M ++ EM RG++ Y+TLI+
Sbjct: 382 HMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGF 441
Query: 267 CHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTP 324
+ D+A F++M+ G+ P +S L L + G ETA+V+ + + + + P
Sbjct: 442 FQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEP 499
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 142/312 (45%), Gaps = 6/312 (1%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M G+ L ++ LI+ C+ + A V KM K ++PDI + LL G+
Sbjct: 107 MQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNR 166
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ + +M + G++PD ++ +I+ R EAV L M C+P +
Sbjct: 167 ISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGI 226
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
++NGL + AL + ++ EP YN ++ A C +NDA + EM G
Sbjct: 227 VVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKG 286
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
I PN TY+ ++ L GR +A + M + P V T+ ++ F ++ A
Sbjct: 287 IRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK-INPNVVTFSALIDAFVKEGKLVEA 345
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+++DEM R + P + YS+LIN C D+LD+A F+ M+ P ++ L +
Sbjct: 346 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKG 405
Query: 301 L-----RDEGME 307
DEGME
Sbjct: 406 FCKAKRVDEGME 417
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 140/293 (47%), Gaps = 6/293 (2%)
Query: 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMK 72
NRL D ++ A +F M K R P I ++ LL + + + +M+
Sbjct: 54 INRLNDL-----KLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQ 108
Query: 73 DDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132
+ G ++ +Y I+IN C + A+ + +M +P +L+NG R+S
Sbjct: 109 NLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRIS 168
Query: 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVL 192
+A+ GQ + G++P++ T+N ++ R ++A ++D M G P+ TY IV+
Sbjct: 169 DAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVV 228
Query: 193 HHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV 252
+ L K G + A S+ K+M + EP V Y ++ C V+ A+ ++ EM +G+
Sbjct: 229 NGLCKRGDIDLALSLLKKMEQGK-IEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGI 287
Query: 253 LPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 305
P + Y++LI LC+ + DA + +M++ I P FS L A EG
Sbjct: 288 RPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEG 340
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 91/200 (45%), Gaps = 1/200 (0%)
Query: 127 SEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTR 186
++ +L +A+ FG K P ++ ++ A + + + ++M+ GI N
Sbjct: 58 NDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLY 117
Query: 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDE 246
TY I+++ + + A +V +M K G EP + T ++ FC+ ++ A+ + +
Sbjct: 118 TYSILINCFCRRSQLSLALAVLAKM-MKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQ 176
Query: 247 MKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGM 306
M G P ++TLI+ L ++ +A M+ G +P + + L G
Sbjct: 177 MVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGD 236
Query: 307 EETAVVLAQKIDKLRKTPLV 326
+ A+ L +K+++ + P V
Sbjct: 237 IDLALSLLKKMEQGKIEPGV 256
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G+K + + ++ C+ E A +F +MK+ PD +Y L+ + + +
Sbjct: 531 GVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAAS 590
Query: 65 NEVYREMKDDGFEPDVVSYGIMIN 88
E+ REM+ F D + G++ N
Sbjct: 591 AELIREMRSCRFVGDASTIGLVTN 614
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 147 bits (372), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 149/289 (51%), Gaps = 1/289 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M+ G++ + ++ LI LC A + M +R+ +P++ ++ L++ + ++
Sbjct: 286 MENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGK 345
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L+ ++Y EM +PD+ +Y +IN C R DEA +F M + +C P+ + T
Sbjct: 346 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNT 405
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LING KR+ E ++ F + +RG TY ++ + + ++A + +M G
Sbjct: 406 LINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDG 465
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+ PN TY+ +L L K G+ E+A VF+ + R EPT+ TY I++ C +V+
Sbjct: 466 VHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK-MEPTIYTYNIMIEGMCKAGKVEDG 524
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP 289
++ + +GV P + +Y+T+I+ C + ++A F++M + G P
Sbjct: 525 WDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLP 573
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/323 (26%), Positives = 160/323 (49%), Gaps = 15/323 (4%)
Query: 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILL------EGWGQQKNLLSMNE 66
++ +ID+LCK RH + A +F +M+ + P++ +Y+ L+ E W LLS
Sbjct: 263 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLS--- 319
Query: 67 VYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLG 126
+M + P+VV++ +I+A + EA +L+ EM + P + +LING
Sbjct: 320 ---DMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC 376
Query: 127 SEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTR 186
RL EA F + P TYN ++ +C + RI++ + EM + G+ NT
Sbjct: 377 MHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTV 436
Query: 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDE 246
TY ++H +A + A VFK+M G P + TY ++ C N +++ AM +++
Sbjct: 437 TYTTLIHGFFQARDCDNAQMVFKQMV-SDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEY 495
Query: 247 MKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGM 306
++ + P ++ Y+ +I +C K++D F + G++P +++ + +G+
Sbjct: 496 LQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGL 555
Query: 307 EETAVVLAQKIDKLRKTPLVDRG 329
+E A L +K+ + PL D G
Sbjct: 556 KEEADALFRKMRE--DGPLPDSG 576
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 160/326 (49%), Gaps = 1/326 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M + G + + F LI L A + D+M +R P++ +Y +++ G ++ +
Sbjct: 181 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 240
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ + +M+ E +VV Y +I++ C + D+A+ LF EME +P+ + +
Sbjct: 241 IDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSS 300
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LI+ L + +R S+A + +R P T+NA++ A+ ++ +A ++ DEM K
Sbjct: 301 LISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRS 360
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
I P+ TY +++ R +EA +F+ M K P V TY ++ FC ++D
Sbjct: 361 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD-CFPNVVTYNTLINGFCKAKRIDEG 419
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+ ++ EM RG++ Y+TLI+ D+A F++M+ G+ P ++ L
Sbjct: 420 VELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDG 479
Query: 301 LRDEGMEETAVVLAQKIDKLRKTPLV 326
L G E A+V+ + + + + P +
Sbjct: 480 LCKNGKLEKAMVVFEYLQRSKMEPTI 505
Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 150/336 (44%), Gaps = 41/336 (12%)
Query: 12 DFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREM 71
+FN+L+ + K + + + +KM++ ++ +Y IL+ + ++ + + +M
Sbjct: 87 EFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKM 146
Query: 72 KDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRL 131
G+EP +V+ ++N +C KR +AV L +M +P F TLI+GL +
Sbjct: 147 MKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKA 206
Query: 132 SEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIV 191
SEA+ + +RG +P TY VV C I+ A+ ++++M I N Y V
Sbjct: 207 SEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTV 266
Query: 192 LHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFC------------------- 232
+ L K ++A ++F M K G P V TY ++ C
Sbjct: 267 IDSLCKYRHEDDALNLFTEMENK-GVRPNVITYSSLISCLCNYERWSDASRLLSDMIERK 325
Query: 233 -------YNAQVDM---------AMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDAC 276
+NA +D A +++DEM R + P + YS+LIN C D+LD+A
Sbjct: 326 INPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 385
Query: 277 KYFQEMLDIGIRPPGQLFSNL-----KQALRDEGME 307
F+ M+ P ++ L K DEG+E
Sbjct: 386 HMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVE 421
Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 139/294 (47%), Gaps = 1/294 (0%)
Query: 12 DFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREM 71
D+ ++ S ++ A +F M K R P I + LL + K + + +M
Sbjct: 52 DYREILRNGLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKM 111
Query: 72 KDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRL 131
+ G ++ +Y I+IN C + A+ L +M +PS +L+NG KR+
Sbjct: 112 QRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRI 171
Query: 132 SEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIV 191
S+A+ Q + G+ P+ T+ ++ + ++A ++D M + G PN TY +V
Sbjct: 172 SDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVV 231
Query: 192 LHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG 251
++ L K G + A+++ +M E V Y V+ C D A+ ++ EM+ +G
Sbjct: 232 VNGLCKRGDIDLAFNLLNKM-EAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKG 290
Query: 252 VLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 305
V P + YS+LI+ LC+ ++ DA + +M++ I P F+ L A EG
Sbjct: 291 VRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEG 344
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 93/175 (53%)
Query: 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMK 72
+N LI+ CK++ ++ E+F +M +R + +YT L+ G+ Q ++ + V+++M
Sbjct: 403 YNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMV 462
Query: 73 DDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132
DG P++++Y +++ C + ++A+ +F ++ + +P+ + + +I G+ ++
Sbjct: 463 SDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVE 522
Query: 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRT 187
+ F +G +P+ YN ++ +C +A + +MR+ G P++ T
Sbjct: 523 DGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577
Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 1/174 (0%)
Query: 144 RGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEE 203
R F + Y ++ SM+++DA + M K P+ ++ +L + K + +
Sbjct: 44 RAFSSGSGDYREILRNGLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDL 103
Query: 204 AYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLI 263
S+ ++M R G + TY I++ FC +Q+ +A+ + +M G P + S+L+
Sbjct: 104 VISLGEKMQR-LGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLL 162
Query: 264 NSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKI 317
N CH ++ DA +M+++G RP F+ L L AV L ++
Sbjct: 163 NGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRM 216
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 70/152 (46%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M + GL + LI ++R + AQ VF +M P+I +Y LL+G +
Sbjct: 426 MSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGK 485
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L V+ ++ EP + +Y IMI C A + ++ +LF + KP I+ T
Sbjct: 486 LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNT 545
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPT 152
+I+G + EA F + ++ G P++ T
Sbjct: 546 MISGFCRKGLKEEADALFRKMREDGPLPDSGT 577
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 92/198 (46%), Gaps = 2/198 (1%)
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
L NGL S K L +A+ FG K P +N ++ A + + + ++M++ G
Sbjct: 57 LRNGLHSMK-LDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLG 115
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
I N TY+I+++ + + A ++ +M K G EP++ T ++ +C+ ++ A
Sbjct: 116 ISHNLYTYNILINCFCRRSQISLALALLGKM-MKLGYEPSIVTLSSLLNGYCHGKRISDA 174
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+ + D+M G P ++TLI+ L +K +A M+ G +P + +
Sbjct: 175 VALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG 234
Query: 301 LRDEGMEETAVVLAQKID 318
L G + A L K++
Sbjct: 235 LCKRGDIDLAFNLLNKME 252
>sp|Q9M2C8|PP291_ARATH Pentatricopeptide repeat-containing protein At3g61360
OS=Arabidopsis thaliana GN=At3g61360 PE=2 SV=1
Length = 498
Score = 147 bits (372), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 148/278 (53%), Gaps = 14/278 (5%)
Query: 3 KFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLL 62
KFG+ + FN L+ C R ++ A+ +F+K+ R F+PD+K+ ILL G+ + ++
Sbjct: 173 KFGVDE----FNILLRAFCTEREMKEARSIFEKLHSR-FNPDVKTMNILLLGFKEAGDVT 227
Query: 63 SMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLI 122
+ Y EM GF+P+ V+YGI I+ C + + EA+ LF +M+ + + I TLI
Sbjct: 228 ATELFYHEMVKRGFKPNSVTYGIRIDGFCKKRNFGEALRLFEDMDRLDFDITVQILTTLI 287
Query: 123 NGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIG 182
+G G + +A Q F + KRG P+ YNA++ + ++ A ++M EM + GI
Sbjct: 288 HGSGVARNKIKARQLFDEISKRGLTPDCGAYNALMSSLMKCGDVSGAIKVMKEMEEKGIE 347
Query: 183 PNTRTYDIVLHHLIKAGR-----TEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQV 237
P++ T+ + ++K+ E Y K S P T PT+ +++++FC+N +V
Sbjct: 348 PDSVTFHSMFIGMMKSKEFGFNGVCEYYQKMKERSLVPKT-PTIV---MLMKLFCHNGEV 403
Query: 238 DMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDA 275
++ + +W M +G P H L +LC + +DA
Sbjct: 404 NLGLDLWKYMLEKGYCPHGHALELLTTALCARRRANDA 441
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 92/207 (44%), Gaps = 2/207 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M K G K + ID CK R+ A +F+ M + FD ++ T L+ G G +N
Sbjct: 236 MVKRGFKPNSVTYGIRIDGFCKKRNFGEALRLFEDMDRLDFDITVQILTTLIHGSGVARN 295
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ +++ E+ G PD +Y ++++ A+++ +EME +P F +
Sbjct: 296 KIKARQLFDEISKRGLTPDCGAYNALMSSLMKCGDVSGAIKVMKEMEEKGIEPDSVTFHS 355
Query: 121 LINGLGSEKR--LSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRK 178
+ G+ K + +++ + K+R P+ PT ++ +C + +N + M +
Sbjct: 356 MFIGMMKSKEFGFNGVCEYYQKMKERSLVPKTPTIVMLMKLFCHNGEVNLGLDLWKYMLE 415
Query: 179 CGIGPNTRTYDIVLHHLIKAGRTEEAY 205
G P+ +++ L R +A+
Sbjct: 416 KGYCPHGHALELLTTALCARRRANDAF 442
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 153/311 (49%), Gaps = 2/311 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M+ G+K + +N L+ LCK+ + M R P++ ++ +LL+ + ++
Sbjct: 254 METKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGK 313
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L NE+Y+EM G P++++Y +++ +C R EA + M C P F +
Sbjct: 314 LQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTS 373
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LI G KR+ + ++ F KRG A TY+ +V +C S +I A + EM G
Sbjct: 374 LIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHG 433
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+ P+ TY I+L L G+ E+A +F+ + +K + + Y ++ C +V+ A
Sbjct: 434 VLPDVMTYGILLDGLCDNGKLEKALEIFEDL-QKSKMDLGIVMYTTIIEGMCKGGKVEDA 492
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
++ + +GV P + Y+ +I+ LC + L +A ++M + G P ++ L +A
Sbjct: 493 WNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRA 552
Query: 301 -LRDEGMEETA 310
LRD + +A
Sbjct: 553 HLRDGDLTASA 563
Score = 142 bits (357), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 151/287 (52%), Gaps = 5/287 (1%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G + ++ +N +++ +C+S A ++ KM++R D+ +Y+ +++ + + +
Sbjct: 188 GCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAA 247
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
+++EM+ G + VV+Y ++ C A ++++ L ++M + P+ F L++
Sbjct: 248 ISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDV 307
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
E +L EA + + + RG P TYN ++ YC R+++A M+D M + P+
Sbjct: 308 FVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPD 367
Query: 185 TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244
T+ ++ R ++ VF+ +S++ G TY I+V+ FC + ++ +A ++
Sbjct: 368 IVTFTSLIKGYCMVKRVDDGMKVFRNISKR-GLVANAVTYSILVQGFCQSGKIKLAEELF 426
Query: 245 DEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEM----LDIGI 287
EM + GVLP + Y L++ LC KL+ A + F+++ +D+GI
Sbjct: 427 QEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGI 473
Score = 133 bits (335), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/350 (23%), Positives = 156/350 (44%), Gaps = 36/350 (10%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G+ + N +I+ C+ A V K+ K ++PD ++ L++G + +
Sbjct: 118 GIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEA 177
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
+ M ++G +PDVV+Y ++N C + A++L R+ME N K + T+I+
Sbjct: 178 VVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDS 237
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
L + + A+ F + + +G + TYN++V C + + ND ++ +M I PN
Sbjct: 238 LCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPN 297
Query: 185 TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEI------------------ 226
T++++L +K G+ +EA ++K M + G P + TY
Sbjct: 298 VITFNVLLDVFVKEGKLQEANELYKEMITR-GISPNIITYNTLMDGYCMQNRLSEANNML 356
Query: 227 -----------------VVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHE 269
+++ +C +VD M+++ + RG++ YS L+ C
Sbjct: 357 DLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQS 416
Query: 270 DKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 319
K+ A + FQEM+ G+ P + L L D G E A+ + + + K
Sbjct: 417 GKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQK 466
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 127/261 (48%), Gaps = 1/261 (0%)
Query: 29 AQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMIN 88
A +F +M + R P + ++ + K + + ++++ +G ++ + IMIN
Sbjct: 72 AIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMIN 131
Query: 89 AHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEP 148
C + A + ++ +P F TLI GL E ++SEA+ + + G +P
Sbjct: 132 CFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQP 191
Query: 149 EAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVF 208
+ TYN++V C S + A ++ +M + + + TY ++ L + G + A S+F
Sbjct: 192 DVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLF 251
Query: 209 KRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCH 268
K M K G + +V TY +VR C + + + +M +R ++P + ++ L++
Sbjct: 252 KEMETK-GIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVK 310
Query: 269 EDKLDDACKYFQEMLDIGIRP 289
E KL +A + ++EM+ GI P
Sbjct: 311 EGKLQEANELYKEMITRGISP 331
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 112/223 (50%), Gaps = 1/223 (0%)
Query: 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVY 68
++ F LI C + V+ +VF + KR + +Y+IL++G+ Q + E++
Sbjct: 367 DIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELF 426
Query: 69 REMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSE 128
+EM G PDV++YGI+++ C + ++A+E+F +++ + ++ T+I G+
Sbjct: 427 QEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKG 486
Query: 129 KRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTY 188
++ +A F +G +P TY ++ C +++A ++ +M + G PN TY
Sbjct: 487 GKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTY 546
Query: 189 DIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMF 231
+ ++ ++ G + + + M + G S+ ++V+ M
Sbjct: 547 NTLIRAHLRDGDLTASAKLIEEM-KSCGFSADASSIKMVIDML 588
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 102/211 (48%), Gaps = 1/211 (0%)
Query: 95 RYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYN 154
+ D+A+ LF+EM + PS F + + K+ + L F Q + G T N
Sbjct: 68 KKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLN 127
Query: 155 AVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRK 214
++ +C + AY ++ ++ K G P+T T++ ++ L G+ EA + RM
Sbjct: 128 IMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVEN 187
Query: 215 PGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDD 274
G +P V TY +V C + +A+ + +M+ R V + YST+I+SLC + +D
Sbjct: 188 -GCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDA 246
Query: 275 ACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 305
A F+EM GI+ +++L + L G
Sbjct: 247 AISLFKEMETKGIKSSVVTYNSLVRGLCKAG 277
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 101/205 (49%), Gaps = 1/205 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
+ K GL ++ L+ C+S ++ A+E+F +M PD+ +Y ILL+G
Sbjct: 394 ISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGK 453
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L E++ +++ + +V Y +I C + ++A LF + KP+ +
Sbjct: 454 LEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTV 513
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
+I+GL + LSEA + ++ G P TYN ++ A+ + + ++++EM+ CG
Sbjct: 514 MISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCG 573
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAY 205
+ + +V+ L+ +G ++++
Sbjct: 574 FSADASSIKMVIDMLL-SGELDKSF 597
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/305 (27%), Positives = 155/305 (50%), Gaps = 2/305 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
++KFG + ++ +N LI+ CK ++ A V D+M+ + F PD +Y I++ +
Sbjct: 150 LEKFG-QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGK 208
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L +V ++ D +P V++Y I+I A DEA++L EM + KP + T
Sbjct: 209 LDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNT 268
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
+I G+ E + A + + +G EP+ +YN ++ A + + ++M +M
Sbjct: 269 IIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEK 328
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
PN TY I++ L + G+ EEA ++ K M K G P +Y+ ++ FC ++D+A
Sbjct: 329 CDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEK-GLTPDAYSYDPLIAAFCREGRLDVA 387
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+ + M + G LP + Y+T++ +LC K D A + F ++ ++G P ++ + A
Sbjct: 388 IEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSA 447
Query: 301 LRDEG 305
L G
Sbjct: 448 LWSSG 452
Score = 145 bits (365), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 81/310 (26%), Positives = 155/310 (50%), Gaps = 2/310 (0%)
Query: 15 RLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDD 74
+LI R++ +A V + ++K PD+ +Y L+ G+ + + V M+
Sbjct: 129 KLIKGFFTLRNIPKAVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDATRVLDRMRSK 187
Query: 75 GFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEA 134
F PD V+Y IMI + CS + D A+++ ++ + NC+P+ + LI E + EA
Sbjct: 188 DFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEA 247
Query: 135 LQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHH 194
L+ + RG +P+ TYN ++ C ++ A+ M+ + G P+ +Y+I+L
Sbjct: 248 LKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRA 307
Query: 195 LIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLP 254
L+ G+ EE + +M + +P V TY I++ C + +++ AM + MK +G+ P
Sbjct: 308 LLNQGKWEEGEKLMTKMFSEK-CDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTP 366
Query: 255 VMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLA 314
+ Y LI + C E +LD A ++ + M+ G P ++ + L G + A+ +
Sbjct: 367 DAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIF 426
Query: 315 QKIDKLRKTP 324
K+ ++ +P
Sbjct: 427 GKLGEVGCSP 436
Score = 125 bits (314), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/317 (24%), Positives = 148/317 (46%), Gaps = 3/317 (0%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
GLK ++ +N +I +CK V+RA E+ ++ + +PD+ SY ILL Q
Sbjct: 258 GLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEG 317
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
++ +M + +P+VV+Y I+I C + +EA+ L + M+ P + + LI
Sbjct: 318 EKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAA 377
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
E RL A++F G P+ YN V+ C + + + A + ++ + G PN
Sbjct: 378 FCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPN 437
Query: 185 TRTYDIVLHHLIKAG-RTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRI 243
+ +Y+ + L +G + + + + MS G +P TY ++ C VD A +
Sbjct: 438 SSSYNTMFSALWSSGDKIRALHMILEMMSN--GIDPDEITYNSMISCLCREGMVDEAFEL 495
Query: 244 WDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRD 303
+M++ P + Y+ ++ C +++DA + M+ G RP ++ L + +
Sbjct: 496 LVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGF 555
Query: 304 EGMEETAVVLAQKIDKL 320
G A+ LA + ++
Sbjct: 556 AGYRAEAMELANDLVRI 572
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 116/228 (50%), Gaps = 4/228 (1%)
Query: 91 CSAKRYDEAVELFREMEATNCKPSPHIFCT-LINGLGSEKRLSEALQFFGQSKKRGFEPE 149
C + Y E++ L M P I CT LI G + + + +A++ +K G +P+
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDV-ILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPD 157
Query: 150 APTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFK 209
YNA++ +C RI+DA R++D MR P+T TY+I++ L G+ + A V
Sbjct: 158 VFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLN 217
Query: 210 RMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHE 269
++ +PTV TY I++ VD A+++ DEM +RG+ P M Y+T+I +C E
Sbjct: 218 QL-LSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKE 276
Query: 270 DKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKI 317
+D A + + + G P ++ L +AL ++G E L K+
Sbjct: 277 GMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKM 324
>sp|Q9LFQ4|PP383_ARATH Pentatricopeptide repeat-containing protein At5g15010,
mitochondrial OS=Arabidopsis thaliana GN=At5g15010 PE=2
SV=2
Length = 572
Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 154/293 (52%), Gaps = 15/293 (5%)
Query: 3 KFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLL 62
+F L+ + DF L+ LC+ ++V A + K ++ D KS+ I+L GW N++
Sbjct: 225 RFKLEMGIDDFQSLLSALCRYKNVSDAGHLI-FCNKDKYPFDAKSFNIVLNGWC---NVI 280
Query: 63 S----MNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIF 118
V+ EM + G + DVVSY MI+ + ++ ++LF M+ +P ++
Sbjct: 281 GSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPDRKVY 340
Query: 119 CTLINGLGSEKRLSEALQFF-GQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMR 177
+++ L +SEA +++G EP TYN+++ C + + +A ++ DEM
Sbjct: 341 NAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDEML 400
Query: 178 KCGIGPNTRTYDIVLHHLIKAGRT-EEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQ 236
+ G+ P RTY H ++ RT EE + + +M RK G EPTV TY +++R C
Sbjct: 401 EKGLFPTIRTY----HAFMRILRTGEEVFELLAKM-RKMGCEPTVETYIMLIRKLCRWRD 455
Query: 237 VDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP 289
D + +WDEMK + V P + Y +I+ L K+++A Y++EM D G+RP
Sbjct: 456 FDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDKGMRP 508
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 114/232 (49%), Gaps = 5/232 (2%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M G+K ++ ++ +I K + + ++FD+MKK +PD K Y ++ +
Sbjct: 293 MGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPDRKVYNAVVHALAKASF 352
Query: 61 LLSMNEVYREMKDD-GFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFC 119
+ + + M+++ G EP+VV+Y +I C A++ +EA ++F EM P+ +
Sbjct: 353 VSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYH 412
Query: 120 TLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179
+ L + + E + + +K G EP TY ++ C ++ + DEM++
Sbjct: 413 AFMRILRTGE---EVFELLAKMRKMGCEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKEK 469
Query: 180 GIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMF 231
+GP+ +Y +++H L G+ EEAY +K M K G P + +++ F
Sbjct: 470 TVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDK-GMRPNENVEDMIQSWF 520
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 123/268 (45%), Gaps = 11/268 (4%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDI---KSYTILLEGWGQQKNL 61
G + + +++ +I L K R + A + D+M R+F P + ++ I++ + ++
Sbjct: 156 GYVRSVREYHSMISILGKMRKFDTAWTLIDEM--RKFSPSLVNSQTLLIMIRKYCAVHDV 213
Query: 62 LSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELF---REMEATNCKPSPHIF 118
+ K E + + +++A C K +A L ++ + K +
Sbjct: 214 GKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFDAKSFNIVL 273
Query: 119 CTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRK 178
N +GS + EA + + + G + + +Y++++ Y +N ++ D M+K
Sbjct: 274 NGWCNVIGSPR---EAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKK 330
Query: 179 CGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVD 238
I P+ + Y+ V+H L KA EA ++ K M + G EP V TY +++ C + +
Sbjct: 331 ECIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTE 390
Query: 239 MAMRIWDEMKARGVLPVMHMYSTLINSL 266
A +++DEM +G+ P + Y + L
Sbjct: 391 EAKQVFDEMLEKGLFPTIRTYHAFMRIL 418
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 96/239 (40%), Gaps = 42/239 (17%)
Query: 101 ELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFF-GQSKKRGFEPEAPTYNAVVGA 159
EL ++E + KPS + +++ + ++ A FF K++G+ Y++++
Sbjct: 113 ELRNKLEECDVKPSNELVVEILSRVRND--WETAFTFFVWAGKQQGYVRSVREYHSMISI 170
Query: 160 YCWSMRINDAYRMMDEMRKCGIGP---NTRTYDIVLHHLIK---AGRTEEAYSVFKRMSR 213
+ + A+ ++DEMRK P N++T I++ G+ + +KR
Sbjct: 171 LGKMRKFDTAWTLIDEMRK--FSPSLVNSQTLLIMIRKYCAVHDVGKAINTFHAYKRFKL 228
Query: 214 KPGTEPTVSTYEIVVR----------MFC-----------YNAQVD----------MAMR 242
+ G + S + R +FC +N ++ A R
Sbjct: 229 EMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFDAKSFNIVLNGWCNVIGSPREAER 288
Query: 243 IWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQAL 301
+W EM GV + YS++I+ L+ K F M I P ++++ + AL
Sbjct: 289 VWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPDRKVYNAVVHAL 347
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 146 bits (368), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 159/345 (46%), Gaps = 34/345 (9%)
Query: 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVY 68
+ DF R++ + K + ++ KM+ D+ S+TIL+ + + L +
Sbjct: 78 SIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALL 137
Query: 69 REMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSE 128
+M GF P +V+ G ++N C R+ EAV L M+ P+ I+ T+INGL
Sbjct: 138 GKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKN 197
Query: 129 KRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTY 188
+ L+ AL+ F +K+G +A TYN ++ S R DA R++ +M K I PN +
Sbjct: 198 RDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFF 257
Query: 189 DIVLHHLIKAGRTEEAYSVFKRMSRKP--------------------------------- 215
++ +K G EA +++K M R+
Sbjct: 258 TALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVS 317
Query: 216 -GTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDD 274
G P V TY ++ FC + +V+ M+++ EM +G++ Y+TLI+ C KL+
Sbjct: 318 KGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNV 377
Query: 275 ACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 319
A K F M+D G+ P ++ L L + G E A+V+ + + K
Sbjct: 378 AQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQK 422
Score = 142 bits (357), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 152/317 (47%), Gaps = 1/317 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
MD FG + +N +I+ LCK+R + A EVF M+K+ D +Y L+ G
Sbjct: 175 MDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGR 234
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ R+M +P+V+ + +I+ EA L++EM + P+ + +
Sbjct: 235 WTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNS 294
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LING L +A F +G P+ TYN ++ +C S R+ D ++ EM G
Sbjct: 295 LINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQG 354
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+ + TY+ ++H +AG+ A VF RM G P + TY I++ C N +++ A
Sbjct: 355 LVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMV-DCGVSPDIVTYNILLDCLCNNGKIEKA 413
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+ + ++++ + + Y+ +I LC DKL +A F+ + G++P + +
Sbjct: 414 LVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISG 473
Query: 301 LRDEGMEETAVVLAQKI 317
L +G++ A L +++
Sbjct: 474 LCRKGLQREADKLCRRM 490
Score = 141 bits (356), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 155/310 (50%), Gaps = 4/310 (1%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M+K G++ + +N LI L S A + M KR+ DP++ +T L++ + ++ N
Sbjct: 210 MEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGN 269
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
LL +Y+EM P+V +Y +IN C +A +F M + C P + T
Sbjct: 270 LLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNT 329
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LI G KR+ + ++ F + +G +A TYN ++ YC + ++N A ++ + M CG
Sbjct: 330 LITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCG 389
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+ P+ TY+I+L L G+ E+A + + + +K + + TY I+++ C ++ A
Sbjct: 390 VSPDIVTYNILLDCLCNNGKIEKALVMVEDL-QKSEMDVDIITYNIIIQGLCRTDKLKEA 448
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
++ + +GV P Y T+I+ LC + +A K + M + G P +++ +
Sbjct: 449 WCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERIYD---ET 505
Query: 301 LRDEGMEETA 310
LRD +A
Sbjct: 506 LRDHYTSLSA 515
Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 131/275 (47%), Gaps = 1/275 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M K G + + L++ C+ + A + D M F P++ Y ++ G + ++
Sbjct: 140 MMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRD 199
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L + EV+ M+ G D V+Y +I+ ++ R+ +A L R+M P+ F
Sbjct: 200 LNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTA 259
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LI+ E L EA + + +R P TYN+++ +C + DA M D M G
Sbjct: 260 LIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKG 319
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
P+ TY+ ++ K+ R E+ +F M+ + G TY ++ +C ++++A
Sbjct: 320 CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQ-GLVGDAFTYNTLIHGYCQAGKLNVA 378
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDA 275
++++ M GV P + Y+ L++ LC+ K++ A
Sbjct: 379 QKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKA 413
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 98/228 (42%), Gaps = 1/228 (0%)
Query: 78 PDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQF 137
P +V + ++ ++D + L+ +ME + F LI+ RLS AL
Sbjct: 77 PSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALAL 136
Query: 138 FGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIK 197
G+ K GF P T +++ +C R +A ++D M G PN Y+ V++ L K
Sbjct: 137 LGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCK 196
Query: 198 AGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMH 257
A VF M +K G TY ++ + + A R+ +M R + P +
Sbjct: 197 NRDLNNALEVFYCMEKK-GIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVI 255
Query: 258 MYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 305
++ LI++ E L +A ++EM+ + P +++L G
Sbjct: 256 FFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHG 303
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 84/197 (42%), Gaps = 1/197 (0%)
Query: 130 RLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYD 189
+ +A F + + P + V+ + + + +M GI + ++
Sbjct: 59 KFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFT 118
Query: 190 IVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKA 249
I++H + R A ++ +M K G P++ T ++ FC + A+ + D M
Sbjct: 119 ILIHCFCRCSRLSLALALLGKM-MKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDG 177
Query: 250 RGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEET 309
G +P + +Y+T+IN LC L++A + F M GIR ++ L L + G
Sbjct: 178 FGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTD 237
Query: 310 AVVLAQKIDKLRKTPLV 326
A L + + K + P V
Sbjct: 238 AARLLRDMVKRKIDPNV 254
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 144 bits (364), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 155/304 (50%), Gaps = 2/304 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
MD G++ ++ ++ LI LC A + M +R+ +P++ ++ L++ + ++
Sbjct: 266 MDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGK 325
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L+ +++ EM +P++V+Y +IN C R DEA ++F M + +C P + T
Sbjct: 326 LIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNT 385
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LING K++ + ++ F +RG TY ++ + + ++A + +M G
Sbjct: 386 LINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDG 445
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+ PN TY+ +L L K G+ E+A VF+ + +K EP + TY I+ C +V+
Sbjct: 446 VHPNIMTYNTLLDGLCKNGKLEKAMVVFEYL-QKSKMEPDIYTYNIMSEGMCKAGKVEDG 504
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
++ + +GV P + Y+T+I+ C + ++A F +M + G P ++ L +A
Sbjct: 505 WDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRA 564
Query: 301 -LRD 303
LRD
Sbjct: 565 HLRD 568
Score = 144 bits (363), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 140/282 (49%), Gaps = 1/282 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M K G + N L++ C + A + D+M + + PD ++T L+ G Q
Sbjct: 126 MMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNK 185
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ M G +PD+V+YG +IN C D A+ L +ME + I+ T
Sbjct: 186 ASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYST 245
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
+I+ L + + +AL F + +G P+ TY++++ C R +DA R++ +M +
Sbjct: 246 VIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERK 305
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
I PN T++ ++ K G+ EA +F M ++ +P + TY ++ FC + ++D A
Sbjct: 306 INPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRS-IDPNIVTYNSLINGFCMHDRLDEA 364
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEM 282
+I+ M ++ LP + Y+TLIN C K+ D + F++M
Sbjct: 365 QQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDM 406
Score = 132 bits (332), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 152/304 (50%), Gaps = 1/304 (0%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G + +L + +I+ LCK + A + +KM+K + + D+ Y+ +++ + +++
Sbjct: 200 GCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDA 259
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
++ EM + G PDV +Y +I+ C+ R+ +A L +M P+ F +LI+
Sbjct: 260 LNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDA 319
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
E +L EA + F + +R +P TYN+++ +C R+++A ++ M P+
Sbjct: 320 FAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPD 379
Query: 185 TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244
TY+ +++ KA + + +F+ MSR+ TV TY ++ F + D A ++
Sbjct: 380 VVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTV-TYTTLIHGFFQASDCDNAQMVF 438
Query: 245 DEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDE 304
+M + GV P + Y+TL++ LC KL+ A F+ + + P ++ + + +
Sbjct: 439 KQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKA 498
Query: 305 GMEE 308
G E
Sbjct: 499 GKVE 502
Score = 124 bits (312), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 127/240 (52%), Gaps = 1/240 (0%)
Query: 66 EVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGL 125
+++ EM P +V + +++A K++D + +ME + + + +IN L
Sbjct: 51 DLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCL 110
Query: 126 GSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNT 185
+LS AL G+ K G+ P T N+++ +C RI++A ++D+M + G P+T
Sbjct: 111 CRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDT 170
Query: 186 RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWD 245
T+ ++H L + + EA ++ +RM K G +P + TY V+ C + D+A+ + +
Sbjct: 171 VTFTTLVHGLFQHNKASEAVALVERMVVK-GCQPDLVTYGAVINGLCKRGEPDLALNLLN 229
Query: 246 EMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 305
+M+ + + +YST+I+SLC +DDA F EM + GIRP +S+L L + G
Sbjct: 230 KMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYG 289
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 133/280 (47%), Gaps = 1/280 (0%)
Query: 26 VERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGI 85
++ A ++F +M K R P I ++ LL + K + +M+ G ++ +Y I
Sbjct: 46 LDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNI 105
Query: 86 MINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRG 145
MIN C + A+ + +M PS +L+NG R+SEA+ Q + G
Sbjct: 106 MINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 165
Query: 146 FEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAY 205
++P+ T+ +V + ++A +++ M G P+ TY V++ L K G + A
Sbjct: 166 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 225
Query: 206 SVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINS 265
++ +M K E V Y V+ C VD A+ ++ EM +G+ P + YS+LI+
Sbjct: 226 NLLNKM-EKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISC 284
Query: 266 LCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 305
LC+ + DA + +ML+ I P F++L A EG
Sbjct: 285 LCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEG 324
Score = 114 bits (286), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 135/289 (46%), Gaps = 1/289 (0%)
Query: 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVY 68
+ +F++L+ + K + + +KM+ ++ +Y I++ ++ L +
Sbjct: 64 SIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAIL 123
Query: 69 REMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSE 128
+M G+ P +V+ ++N C R EAV L +M +P F TL++GL
Sbjct: 124 GKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQH 183
Query: 129 KRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTY 188
+ SEA+ + +G +P+ TY AV+ C + A ++++M K I + Y
Sbjct: 184 NKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIY 243
Query: 189 DIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMK 248
V+ L K ++A ++F M K G P V TY ++ C + A R+ +M
Sbjct: 244 STVIDSLCKYRHVDDALNLFTEMDNK-GIRPDVFTYSSLISCLCNYGRWSDASRLLSDML 302
Query: 249 ARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNL 297
R + P + +++LI++ E KL +A K F EM+ I P +++L
Sbjct: 303 ERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSL 351
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 90/201 (44%), Gaps = 36/201 (17%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G+ + +N L+D LCK+ +E+A VF+ ++K + +PDI +Y I+ EG + +
Sbjct: 445 GVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDG 504
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
+++ + G +PDV++Y MI+ C +EA LF +M
Sbjct: 505 WDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKM------------------ 546
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
K+ G P++ TYN ++ A+ + ++ EMR C +
Sbjct: 547 -----------------KEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGD 589
Query: 185 TRTYDIVLHHLIKAGRTEEAY 205
TY +V ++ GR ++ +
Sbjct: 590 ASTYGLV-TDMLHDGRLDKGF 609
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 88/190 (46%), Gaps = 1/190 (0%)
Query: 130 RLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYD 189
+L EA+ FG+ K P ++ ++ A + + ++M G+ N TY+
Sbjct: 45 KLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYN 104
Query: 190 IVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKA 249
I+++ L + + A ++ +M K G P++ T ++ FC+ ++ A+ + D+M
Sbjct: 105 IMINCLCRRSQLSFALAILGKM-MKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVE 163
Query: 250 RGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEET 309
G P ++TL++ L +K +A + M+ G +P + + L G +
Sbjct: 164 MGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDL 223
Query: 310 AVVLAQKIDK 319
A+ L K++K
Sbjct: 224 ALNLLNKMEK 233
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 72/154 (46%), Gaps = 1/154 (0%)
Query: 164 MRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVST 223
+++++A + EM K P+ + +L + K + + S ++M G + T
Sbjct: 44 LKLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKM-EILGVSHNLYT 102
Query: 224 YEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEML 283
Y I++ C +Q+ A+ I +M G P + ++L+N CH +++ +A +M+
Sbjct: 103 YNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMV 162
Query: 284 DIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKI 317
++G +P F+ L L AV L +++
Sbjct: 163 EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERM 196
Score = 35.8 bits (81), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/125 (20%), Positives = 53/125 (42%), Gaps = 1/125 (0%)
Query: 200 RTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMY 259
+ +EA +F M K P++ + ++ + D+ + ++M+ GV ++ Y
Sbjct: 45 KLDEAVDLFGEMV-KSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTY 103
Query: 260 STLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 319
+ +IN LC +L A +M+ +G P ++L AV L ++ +
Sbjct: 104 NIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVE 163
Query: 320 LRKTP 324
+ P
Sbjct: 164 MGYQP 168
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 144 bits (364), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 85/330 (25%), Positives = 163/330 (49%), Gaps = 11/330 (3%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G+ + + L++ L K+ V+ A+E+F +M+ + PD+ SY +L+ G+ + N+
Sbjct: 587 GILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKA 646
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
+ ++ EM ++G P+V+ Y +++ C + ++A EL EM P+ +CT+I+G
Sbjct: 647 SSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDG 706
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMD--EMRKCGIG 182
L+EA + F + K +G P++ Y +V C R+ND R + K G
Sbjct: 707 YCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCC---RLNDVERAITIFGTNKKGCA 763
Query: 183 PNTRTYDIVLHHLIKAGRTEEAYSVFKRM---SRKPGTEPTVSTYEIVVRMFCYNAQVDM 239
+T ++ +++ + K G+TE V R+ S +P TY I++ C ++
Sbjct: 764 SSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEA 823
Query: 240 AMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQ 299
A ++ +M+ ++P + Y++L+N + + F E + GI P ++S +
Sbjct: 824 AKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIIN 883
Query: 300 ALRDEGMEETAVVLAQKIDKLRKTPLVDRG 329
A EGM A+VL +D++ VD G
Sbjct: 884 AFLKEGMTTKALVL---VDQMFAKNAVDDG 910
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 142/306 (46%), Gaps = 1/306 (0%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
GL + + LI+ C+ ++V + E+ +MKKR +Y +++G +L
Sbjct: 377 GLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGA 436
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
+ +EM G P+VV Y +I R+ +A+ + +EM+ P + +LI G
Sbjct: 437 YNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIG 496
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
L KR+ EA F + + G +P A TY A + Y + A + + EMR+CG+ PN
Sbjct: 497 LSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPN 556
Query: 185 TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244
+++ K G+ EA S ++ M + G TY +++ N +VD A I+
Sbjct: 557 KVLCTGLINEYCKKGKVIEACSAYRSMVDQ-GILGDAKTYTVLMNGLFKNDKVDDAEEIF 615
Query: 245 DEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDE 304
EM+ +G+ P + Y LIN + A F EM++ G+ P +++ L
Sbjct: 616 REMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRS 675
Query: 305 GMEETA 310
G E A
Sbjct: 676 GEIEKA 681
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 137/279 (49%), Gaps = 1/279 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M + G+ ++ +N LI L K++ ++ A+ +M + P+ +Y + G+ +
Sbjct: 478 MKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASE 537
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
S ++ +EM++ G P+ V +IN +C + EA +R M +
Sbjct: 538 FASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTV 597
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
L+NGL ++ +A + F + + +G P+ +Y ++ + + A + DEM + G
Sbjct: 598 LMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEG 657
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+ PN Y+++L ++G E+A + MS K G P TY ++ +C + + A
Sbjct: 658 LTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVK-GLHPNAVTYCTIIDGYCKSGDLAEA 716
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYF 279
R++DEMK +G++P +Y+TL++ C + ++ A F
Sbjct: 717 FRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIF 755
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/324 (24%), Positives = 137/324 (42%), Gaps = 36/324 (11%)
Query: 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMK 72
++ LID LCK + +E A+ + +M D +Y++L++G + +N + + EM
Sbjct: 280 YDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMV 339
Query: 73 DDGFE-----------------------------------PDVVSYGIMINAHCSAKRYD 97
G P +Y +I +C K
Sbjct: 340 SHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVR 399
Query: 98 EAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVV 157
+ EL EM+ N SP+ + T++ G+ S L A + G P Y ++
Sbjct: 400 QGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLI 459
Query: 158 GAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGT 217
+ + R DA R++ EM++ GI P+ Y+ ++ L KA R +EA S M G
Sbjct: 460 KTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVEN-GL 518
Query: 218 EPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACK 277
+P TY + + ++ A + EM+ GVLP + + LIN C + K+ +AC
Sbjct: 519 KPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACS 578
Query: 278 YFQEMLDIGIRPPGQLFSNLKQAL 301
++ M+D GI + ++ L L
Sbjct: 579 AYRSMVDQGILGDAKTYTVLMNGL 602
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 126/265 (47%), Gaps = 1/265 (0%)
Query: 25 HVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYG 84
+V+ A ++ + M + P +Y +L++G + K L + EM G D +Y
Sbjct: 257 NVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYS 316
Query: 85 IMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144
++I+ + D A L EM + P+++ I + E + +A F
Sbjct: 317 LLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIAS 376
Query: 145 GFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEA 204
G P+A Y +++ YC + Y ++ EM+K I + TY V+ + +G + A
Sbjct: 377 GLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGA 436
Query: 205 YSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLIN 264
Y++ K M G P V Y +++ F N++ AMR+ EMK +G+ P + Y++LI
Sbjct: 437 YNIVKEMI-ASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLII 495
Query: 265 SLCHEDKLDDACKYFQEMLDIGIRP 289
L ++D+A + EM++ G++P
Sbjct: 496 GLSKAKRMDEARSFLVEMVENGLKP 520
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 112/260 (43%), Gaps = 2/260 (0%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
GLK + I ++ A + +M++ P+ T L+ + ++ ++
Sbjct: 517 GLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEA 576
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
YR M D G D +Y +++N + D+A E+FREM P + LING
Sbjct: 577 CSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLING 636
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
+ +A F + + G P YN ++G +C S I A ++DEM G+ PN
Sbjct: 637 FSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPN 696
Query: 185 TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244
TY ++ K+G EA+ +F M K G P Y +V C V+ A+ I+
Sbjct: 697 AVTYCTIIDGYCKSGDLAEAFRLFDEMKLK-GLVPDSFVYTTLVDGCCRLNDVERAITIF 755
Query: 245 DEMKARGVLPVMHMYSTLIN 264
K +G ++ LIN
Sbjct: 756 GTNK-KGCASSTAPFNALIN 774
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 98/216 (45%), Gaps = 10/216 (4%)
Query: 2 DKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFD----PDIKSYTILLEGWGQ 57
+K G FN LI+ + K E EV +++ FD P+ +Y I+++ +
Sbjct: 758 NKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCK 817
Query: 58 QKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHI 117
+ NL + E++ +M++ P V++Y ++N + R E +F E A +P +
Sbjct: 818 EGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIM 877
Query: 118 FCTLINGLGSEKRLSEAL----QFFGQSK-KRGFEPEAPTYNAVVGAYCWSMRINDAYRM 172
+ +IN E ++AL Q F ++ G + T A++ + + A ++
Sbjct: 878 YSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKV 937
Query: 173 MDEMRKCGIGPNTRTY-DIVLHHLIKAGRTEEAYSV 207
M+ M + P++ T +++ I + + EA +V
Sbjct: 938 MENMVRLQYIPDSATVIELINESCISSNQRVEADAV 973
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 68/324 (20%), Positives = 126/324 (38%), Gaps = 34/324 (10%)
Query: 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNE 66
+Q+L F+ L LC E+A V ++M +R + + E W +++ ++
Sbjct: 94 EQKLDSFSFLALDLCNFGSFEKALSVVERMIERNWP--------VAEVW---SSIVRCSQ 142
Query: 67 VYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLG 126
+ DDG V +GI+ + + + +EAV +F P L++ L
Sbjct: 143 EFVGKSDDG-----VLFGILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALL 197
Query: 127 SEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTR 186
RL + +R + TY+ ++ A+C + + ++ + K R
Sbjct: 198 RWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEK-----EFR 252
Query: 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDE 246
T + + +K K G P TY++++ C +++ A + E
Sbjct: 253 TATLNVDGALK----------LKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVE 302
Query: 247 MKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGM 306
M + GV H YS LI+ L D A EM+ GI ++ + EG+
Sbjct: 303 MDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGV 362
Query: 307 EETAVVLAQKIDKLRKTPLVDRGQ 330
E A L D + + L+ + Q
Sbjct: 363 MEKAKAL---FDGMIASGLIPQAQ 383
>sp|Q9FZ19|PPR5_ARATH Putative pentatricopeptide repeat-containing protein At1g02420
OS=Arabidopsis thaliana GN=At1g02420 PE=3 SV=2
Length = 491
Score = 144 bits (364), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 165/320 (51%), Gaps = 15/320 (4%)
Query: 6 LKQELPDF------NRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQK 59
K+ +PDF N L+ TLC+ + + A+ V+ +K +F PD++++ ILL GW K
Sbjct: 170 FKRLVPDFFDTACFNALLRTLCQEKSMTDARNVYHSLK-HQFQPDLQTFNILLSGW---K 225
Query: 60 NLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFC 119
+ + EMK G +PDVV+Y +I+ +C + ++A +L +M P +
Sbjct: 226 SSEEAEAFFEEMKGKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYT 285
Query: 120 TLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179
T+I GLG + +A + + K+ G P+ YNA + +C + R+ DA +++DEM K
Sbjct: 286 TVIGGLGLIGQPDKAREVLKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKK 345
Query: 180 GIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTE--PTVSTYEIVVRMFCYNAQV 237
G+ PN TY++ L A ++ ++ RM G E P + +++MF + +V
Sbjct: 346 GLSPNATTYNLFFRVLSLANDLGRSWELYVRM---LGNECLPNTQSCMFLIKMFKRHEKV 402
Query: 238 DMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNL 297
DMAMR+W++M +G + L++ LC K+++A K EM++ G RP F +
Sbjct: 403 DMAMRLWEDMVVKGFGSYSLVSDVLLDLLCDLAKVEEAEKCLLEMVEKGHRPSNVSFKRI 462
Query: 298 KQALRDEGMEETAVVLAQKI 317
K + + L QK+
Sbjct: 463 KLLMELANKHDEVNNLIQKM 482
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/243 (18%), Positives = 96/243 (39%), Gaps = 35/243 (14%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERA----------------------------------- 29
GLK ++ +N LID CK R +E+A
Sbjct: 241 GLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQPDKA 300
Query: 30 QEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINA 89
+EV +MK+ PD+ +Y + + + L +++ EM G P+ +Y +
Sbjct: 301 REVLKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGLSPNATTYNLFFRV 360
Query: 90 HCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPE 149
A + EL+ M C P+ LI +++ A++ + +GF
Sbjct: 361 LSLANDLGRSWELYVRMLGNECLPNTQSCMFLIKMFKRHEKVDMAMRLWEDMVVKGFGSY 420
Query: 150 APTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFK 209
+ + ++ C ++ +A + + EM + G P+ ++ + + A + +E ++ +
Sbjct: 421 SLVSDVLLDLLCDLAKVEEAEKCLLEMVEKGHRPSNVSFKRIKLLMELANKHDEVNNLIQ 480
Query: 210 RMS 212
+M+
Sbjct: 481 KMA 483
>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560,
mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2
SV=1
Length = 660
Score = 144 bits (364), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 160/314 (50%), Gaps = 3/314 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
MD+ G++ F+ +I LCK + VF+ M ++ P++ YT+L++G+ + +
Sbjct: 318 MDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGS 377
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ + M D+GF+PDVV+Y +++N C R +EA++ F + + +
Sbjct: 378 VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSS 437
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEM-RKC 179
LI+GLG R+ EA + F + ++G ++ YNA++ A+ ++++A + M +
Sbjct: 438 LIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEE 497
Query: 180 GIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDM 239
G TY I+L + K R EEA ++ M K G PT + + + C + +V
Sbjct: 498 GCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDK-GITPTAACFRALSTGLCLSGKVAR 556
Query: 240 AMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQ 299
A +I DE+ GV+ + +IN+LC ++ +ACK + + G PG++ + +
Sbjct: 557 ACKILDELAPMGVI-LDAACEDMINTLCKAGRIKEACKLADGITERGREVPGRIRTVMIN 615
Query: 300 ALRDEGMEETAVVL 313
ALR G + A+ L
Sbjct: 616 ALRKVGKADLAMKL 629
Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 137/282 (48%), Gaps = 1/282 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M + G++ L +N L++ L + V+ A+ VF+ M+ R PDI +Y +++G+ +
Sbjct: 213 MKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQ 272
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
E R+M+ G E D ++Y MI A + + V L++EM+ + PH F
Sbjct: 273 TQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSL 332
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
+I GL E +L+E F ++G +P Y ++ Y S + DA R++ M G
Sbjct: 333 VIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 392
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
P+ TY +V++ L K GR EEA F R G Y ++ +VD A
Sbjct: 393 FKPDVVTYSVVVNGLCKNGRVEEALDYF-HTCRFDGLAINSMFYSSLIDGLGKAGRVDEA 451
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEM 282
R+++EM +G + Y+ LI++ K+D+A F+ M
Sbjct: 452 ERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRM 493
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/319 (24%), Positives = 150/319 (47%), Gaps = 1/319 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
+ KF + N LI + K VE V+ KMK+ +P + +Y L+ G
Sbjct: 178 IKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMF 237
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ S V+ M+ +PD+V+Y MI +C A + +A+E R+ME + + T
Sbjct: 238 VDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMT 297
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
+I ++ + + + ++G + ++ V+G C ++N+ Y + + M + G
Sbjct: 298 MIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKG 357
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
PN Y +++ K+G E+A + RM + G +P V TY +VV C N +V+ A
Sbjct: 358 SKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDE-GFKPDVVTYSVVVNGLCKNGRVEEA 416
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
+ + + G+ YS+LI+ L ++D+A + F+EM + G ++ L A
Sbjct: 417 LDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDA 476
Query: 301 LRDEGMEETAVVLAQKIDK 319
+ A+ L +++++
Sbjct: 477 FTKHRKVDEAIALFKRMEE 495
Score = 125 bits (314), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 141/290 (48%), Gaps = 1/290 (0%)
Query: 16 LIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDG 75
L+D L ++ V+R + V ++KK F + + L++ +G+ + + V+R+MK++G
Sbjct: 158 LVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKENG 217
Query: 76 FEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEAL 135
EP + +Y ++N SA D A +F ME+ KP + T+I G + +A+
Sbjct: 218 IEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAM 277
Query: 136 QFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHL 195
+ + RG E + TY ++ A + EM + GI + +V+ L
Sbjct: 278 EKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGL 337
Query: 196 IKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPV 255
K G+ E Y+VF+ M RK G++P V+ Y +++ + + V+ A+R+ M G P
Sbjct: 338 CKEGKLNEGYTVFENMIRK-GSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPD 396
Query: 256 MHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 305
+ YS ++N LC ++++A YF G+ +S+L L G
Sbjct: 397 VVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAG 446
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 144 bits (363), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 153/320 (47%), Gaps = 36/320 (11%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMK--------------------------- 37
G K + + LI LCK+RH+ A E+F++M
Sbjct: 183 GFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDA 242
Query: 38 --------KRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINA 89
KRR +P++ ++T L++ + + L+ E+Y M PDV +YG +IN
Sbjct: 243 AWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLING 302
Query: 90 HCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPE 149
C DEA ++F ME C P+ I+ TLI+G KR+ + ++ F + ++G
Sbjct: 303 LCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVAN 362
Query: 150 APTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFK 209
TY ++ YC R + A + ++M P+ RTY+++L L G+ E+A +F+
Sbjct: 363 TITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFE 422
Query: 210 RMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHE 269
M RK + + TY I+++ C +V+ A ++ + ++G+ P + Y+T+I+ C
Sbjct: 423 YM-RKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRR 481
Query: 270 DKLDDACKYFQEMLDIGIRP 289
+ +A F++M + G P
Sbjct: 482 GLIHEADSLFKKMKEDGFLP 501
Score = 138 bits (348), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 144/291 (49%), Gaps = 5/291 (1%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M K G + +L F L++ C +E A +FD++ F P++ +YT L+ + ++
Sbjct: 144 MMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRH 203
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
L E++ +M +G P+VV+Y ++ C R+ +A L R+M +P+ F
Sbjct: 204 LNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTA 263
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
LI+ +L EA + + + P+ TY +++ C +++A +M M + G
Sbjct: 264 LIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNG 323
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
PN Y ++H K+ R E+ +F MS+K G TY ++++ +C + D+A
Sbjct: 324 CYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQK-GVVANTITYTVLIQGYCLVGRPDVA 382
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEM----LDIGI 287
++++M +R P + Y+ L++ LC K++ A F+ M +DI I
Sbjct: 383 QEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINI 433
Score = 128 bits (321), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 84/319 (26%), Positives = 148/319 (46%), Gaps = 1/319 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M G+ L N ++ +C S RA KM K F+PD+ ++T LL G+
Sbjct: 109 MQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNR 168
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ ++ ++ GF+P+VV+Y +I C + + AVELF +M +P+ +
Sbjct: 169 IEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNA 228
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
L+ GL R +A KR EP T+ A++ A+ ++ +A + + M +
Sbjct: 229 LVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMS 288
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
+ P+ TY +++ L G +EA +F M R G P Y ++ FC + +V+
Sbjct: 289 VYPDVFTYGSLINGLCMYGLLDEARQMFYLMERN-GCYPNEVIYTTLIHGFCKSKRVEDG 347
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
M+I+ EM +GV+ Y+ LI C + D A + F +M P + ++ L
Sbjct: 348 MKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDG 407
Query: 301 LRDEGMEETAVVLAQKIDK 319
L G E A+++ + + K
Sbjct: 408 LCCNGKVEKALMIFEYMRK 426
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 123/269 (45%), Gaps = 1/269 (0%)
Query: 29 AQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMIN 88
A ++F +M R P I +T LL + + ++ +M+ G P + + I+++
Sbjct: 67 ALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMH 126
Query: 89 AHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEP 148
C + + A +M +P F +L+NG R+ +A+ F Q GF+P
Sbjct: 127 CVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKP 186
Query: 149 EAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVF 208
TY ++ C + +N A + ++M G PN TY+ ++ L + GR +A +
Sbjct: 187 NVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLL 246
Query: 209 KRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCH 268
+ M ++ EP V T+ ++ F ++ A +++ M V P + Y +LIN LC
Sbjct: 247 RDMMKRR-IEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCM 305
Query: 269 EDKLDDACKYFQEMLDIGIRPPGQLFSNL 297
LD+A + F M G P +++ L
Sbjct: 306 YGLLDEARQMFYLMERNGCYPNEVIYTTL 334
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 92/204 (45%), Gaps = 2/204 (0%)
Query: 123 NGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIG 182
NGL + ++AL F + P + ++ R + + ++M+ GI
Sbjct: 57 NGL-HNLQFNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIP 115
Query: 183 PNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMR 242
P T +IV+H + + + A +M K G EP + T+ ++ +C+ +++ A+
Sbjct: 116 PLLCTCNIVMHCVCLSSQPCRASCFLGKM-MKLGFEPDLVTFTSLLNGYCHWNRIEDAIA 174
Query: 243 IWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALR 302
++D++ G P + Y+TLI LC L+ A + F +M G RP ++ L L
Sbjct: 175 LFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLC 234
Query: 303 DEGMEETAVVLAQKIDKLRKTPLV 326
+ G A L + + K R P V
Sbjct: 235 EIGRWGDAAWLLRDMMKRRIEPNV 258
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/342 (26%), Positives = 160/342 (46%), Gaps = 37/342 (10%)
Query: 1 MDKFGLKQELPDFNRLIDTLCK---SRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQ 57
M +G + +N LID CK + + +A V +M + P++ ++ IL++G+ +
Sbjct: 249 MKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWK 308
Query: 58 QKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHI 117
NL +V++EM D +P+V+SY +IN C+ + EA+ + +M + +P+
Sbjct: 309 DDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLIT 368
Query: 118 FCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMR 177
+ LING L EAL FG K +G P YN ++ AYC +I+D + + +EM
Sbjct: 369 YNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEME 428
Query: 178 KCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKP---------------------- 215
+ GI P+ TY+ ++ L + G E A +F +++ K
Sbjct: 429 REGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGLPDLVTFHILMEGYCRKGESRK 488
Query: 216 -----------GTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEM-KARGVLPVMHMYSTLI 263
G +P TY IV++ +C + A + +M K R + + Y+ L+
Sbjct: 489 AAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLL 548
Query: 264 NSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 305
+ KL+DA EML+ G+ P + +K+ + D+G
Sbjct: 549 QGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDQG 590
Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 166/313 (53%), Gaps = 5/313 (1%)
Query: 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGW---GQQKNLLSMNEVYR 69
FN +I+ LCK+ + +A++V + MK P++ SY L++G+ G + + V +
Sbjct: 226 FNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLK 285
Query: 70 EMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEK 129
EM ++ P++ ++ I+I+ ++++F+EM + KP+ + +LINGL +
Sbjct: 286 EMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGG 345
Query: 130 RLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYD 189
++SEA+ + G +P TYNA++ +C + + +A M ++ G P TR Y+
Sbjct: 346 KISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYN 405
Query: 190 IVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKA 249
+++ K G+ ++ +++ + M R+ G P V TY ++ C N ++ A +++D++ +
Sbjct: 406 MLIDAYCKLGKIDDGFALKEEMERE-GIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTS 464
Query: 250 RGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEET 309
+G LP + + L+ C + + A +EM +G++P ++ + + EG +
Sbjct: 465 KG-LPDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKA 523
Query: 310 AVVLAQKIDKLRK 322
A + +++K R+
Sbjct: 524 ATNMRTQMEKERR 536
Score = 124 bits (312), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 155/325 (47%), Gaps = 7/325 (2%)
Query: 4 FGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLS 63
+G K L+ L K + V+ +M +R+ P++ ++ +++ + +
Sbjct: 182 YGYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNK 241
Query: 64 MNEVYREMKDDGFEPDVVSYGIMINAHC----SAKRYDEAVELFREMEATNCKPSPHIFC 119
+V +MK G P+VVSY +I+ +C + K Y +A + +EM + P+ F
Sbjct: 242 ARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMY-KADAVLKEMVENDVSPNLTTFN 300
Query: 120 TLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179
LI+G + L +++ F + + +P +YN+++ C +I++A M D+M
Sbjct: 301 ILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSA 360
Query: 180 GIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDM 239
G+ PN TY+ +++ K +EA +F + + G PT Y +++ +C ++D
Sbjct: 361 GVQPNLITYNALINGFCKNDMLKEALDMFGSV-KGQGAVPTTRMYNMLIDAYCKLGKIDD 419
Query: 240 AMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQ 299
+ +EM+ G++P + Y+ LI LC ++ A K F ++ G+ P F L +
Sbjct: 420 GFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILME 478
Query: 300 ALRDEGMEETAVVLAQKIDKLRKTP 324
+G A +L +++ K+ P
Sbjct: 479 GYCRKGESRKAAMLLKEMSKMGLKP 503
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 108/215 (50%), Gaps = 18/215 (8%)
Query: 85 IMINAHCSAKRYDEAVELFR-------EMEATNCKPSPHIFCTLINGLGSEKRLSEALQF 137
+++ A+ + R++ E F+ ++ A +CKP L+ L E R ++
Sbjct: 158 MLVLAYANNSRFELGFEAFKRSGYYGYKLSALSCKP-------LMIALLKENRSADVEYV 210
Query: 138 FGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIK 197
+ + +R +P T+N V+ A C + ++N A +M++M+ G PN +Y+ ++ K
Sbjct: 211 YKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCK 270
Query: 198 AGRTEEAY---SVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLP 254
G + Y +V K M P ++T+ I++ F + + +M+++ EM + V P
Sbjct: 271 LGGNGKMYKADAVLKEMVEND-VSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKP 329
Query: 255 VMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP 289
+ Y++LIN LC+ K+ +A +M+ G++P
Sbjct: 330 NVISYNSLINGLCNGGKISEAISMRDKMVSAGVQP 364
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 143/290 (49%), Gaps = 2/290 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
M + GL E+ FN L++ LCK V A + M + + PDI ++ IL+ G+ Q
Sbjct: 417 MSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLK 476
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ + E+ M D+G +PDV +Y ++N C ++++ +E ++ M C P+ F
Sbjct: 477 MENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNI 536
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC- 179
L+ L ++L EAL + K + P+A T+ ++ +C + ++ AY + +M +
Sbjct: 537 LLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAY 596
Query: 180 GIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDM 239
+ +T TY+I++H + A +F+ M + P TY ++V FC V++
Sbjct: 597 KVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRC-LGPDGYTYRLMVDGFCKTGNVNL 655
Query: 240 AMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP 289
+ EM G +P + +IN LC ED++ +A M+ G+ P
Sbjct: 656 GYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVP 705
Score = 134 bits (338), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 83/319 (26%), Positives = 146/319 (45%), Gaps = 1/319 (0%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G K ++ +N LI LCK+ + A+ KM +PD +Y L+ G+ + +
Sbjct: 281 GPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLA 340
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
+ + +GF PD +Y +I+ C + A+ LF E KP+ ++ TLI G
Sbjct: 341 ERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKG 400
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
L ++ + EA Q + ++G PE T+N +V C ++DA ++ M G P+
Sbjct: 401 LSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPD 460
Query: 185 TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244
T++I++H + E A + M G +P V TY ++ C ++ + M +
Sbjct: 461 IFTFNILIHGYSTQLKMENALEILDVMLDN-GVDPDVYTYNSLLNGLCKTSKFEDVMETY 519
Query: 245 DEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDE 304
M +G P + ++ L+ SLC KLD+A +EM + + P F L
Sbjct: 520 KTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKN 579
Query: 305 GMEETAVVLAQKIDKLRKT 323
G + A L +K+++ K
Sbjct: 580 GDLDGAYTLFRKMEEAYKV 598
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 152/326 (46%), Gaps = 1/326 (0%)
Query: 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN 60
MD + + + +N ++ L S + ++A +V+ +M+ R PD+ S+TI ++ + +
Sbjct: 102 MDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSR 161
Query: 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120
+ + M G E +VV+Y ++ E ELF +M A+ F
Sbjct: 162 PHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNK 221
Query: 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180
L+ L + + E + + KRG P TYN + C ++ A RM+ + + G
Sbjct: 222 LLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQG 281
Query: 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240
P+ TY+ +++ L K + +EA +M + G EP TY ++ +C V +A
Sbjct: 282 PKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNE-GLEPDSYTYNTLIAGYCKGGMVQLA 340
Query: 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300
RI + G +P Y +LI+ LCHE + + A F E L GI+P L++ L +
Sbjct: 341 ERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKG 400
Query: 301 LRDEGMEETAVVLAQKIDKLRKTPLV 326
L ++GM A LA ++ + P V
Sbjct: 401 LSNQGMILEAAQLANEMSEKGLIPEV 426
Score = 124 bits (312), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 153/332 (46%), Gaps = 36/332 (10%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNL--- 61
G+ L FN+L+ LCK V+ +++ DK+ KR P++ +Y + ++G Q+ L
Sbjct: 211 GVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGA 270
Query: 62 -------------------------LSMNEVYRE-------MKDDGFEPDVVSYGIMINA 89
L N ++E M ++G EPD +Y +I
Sbjct: 271 VRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAG 330
Query: 90 HCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPE 149
+C A + + P + +LI+GL E + AL F ++ +G +P
Sbjct: 331 YCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPN 390
Query: 150 APTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFK 209
YN ++ I +A ++ +EM + G+ P +T++I+++ L K G +A + K
Sbjct: 391 VILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVK 450
Query: 210 RMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHE 269
M K G P + T+ I++ + +++ A+ I D M GV P ++ Y++L+N LC
Sbjct: 451 VMISK-GYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKT 509
Query: 270 DKLDDACKYFQEMLDIGIRPPGQLFSNLKQAL 301
K +D + ++ M++ G P F+ L ++L
Sbjct: 510 SKFEDVMETYKTMVEKGCAPNLFTFNILLESL 541
Score = 124 bits (312), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 142/285 (49%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G+K + +N LI L + A ++ ++M ++ P+++++ IL+ G + +
Sbjct: 386 GIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDA 445
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124
+ + + M G+ PD+ ++ I+I+ + + + + A+E+ M P + + +L+NG
Sbjct: 446 DGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNG 505
Query: 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184
L + + ++ + ++G P T+N ++ + C ++++A +++EM+ + P+
Sbjct: 506 LCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPD 565
Query: 185 TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244
T+ ++ K G + AY++F++M + TY I++ F V MA +++
Sbjct: 566 AVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLF 625
Query: 245 DEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP 289
EM R + P + Y +++ C ++ K+ EM++ G P
Sbjct: 626 QEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIP 670
Score = 121 bits (303), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 135/289 (46%), Gaps = 5/289 (1%)
Query: 10 LPD---FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNE 66
+PD + LID LC RA +F++ + P++ Y L++G Q +L +
Sbjct: 353 VPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQ 412
Query: 67 VYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLG 126
+ EM + G P+V ++ I++N C +A L + M + P F LI+G
Sbjct: 413 LANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYS 472
Query: 127 SEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTR 186
++ ++ AL+ G +P+ TYN+++ C + + D M + G PN
Sbjct: 473 TQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLF 532
Query: 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDE 246
T++I+L L + + +EA + + M K P T+ ++ FC N +D A ++ +
Sbjct: 533 TFNILLESLCRYRKLDEALGLLEEMKNKS-VNPDAVTFGTLIDGFCKNGDLDGAYTLFRK 591
Query: 247 M-KARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLF 294
M +A V Y+ +I++ + + A K FQEM+D + P G +
Sbjct: 592 MEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTY 640
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 104/220 (47%), Gaps = 1/220 (0%)
Query: 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSM 64
G+ ++ +N L++ LCK+ E E + M ++ P++ ++ ILLE + + L
Sbjct: 491 GVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEA 550
Query: 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREME-ATNCKPSPHIFCTLIN 123
+ EMK+ PD V++G +I+ C D A LFR+ME A S + +I+
Sbjct: 551 LGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIH 610
Query: 124 GLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGP 183
+ ++ A + F + R P+ TY +V +C + +N Y+ + EM + G P
Sbjct: 611 AFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIP 670
Query: 184 NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVST 223
+ T V++ L R EA + RM +K V+T
Sbjct: 671 SLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPEAVNT 710
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,184,312
Number of Sequences: 539616
Number of extensions: 5110414
Number of successful extensions: 20157
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 11988
Number of HSP's gapped (non-prelim): 3128
length of query: 330
length of database: 191,569,459
effective HSP length: 118
effective length of query: 212
effective length of database: 127,894,771
effective search space: 27113691452
effective search space used: 27113691452
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)