Query 037620
Match_columns 330
No_of_seqs 681 out of 1399
Neff 12.1
Searched_HMMs 46136
Date Fri Mar 29 02:46:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037620.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037620hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.9E-58 6.3E-63 408.2 40.9 325 1-326 463-789 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 2.7E-56 5.8E-61 395.7 42.0 318 8-326 435-754 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 3E-51 6.6E-56 360.1 31.8 303 2-317 150-488 (697)
4 PLN03081 pentatricopeptide (PP 100.0 3.2E-50 7E-55 353.7 33.0 310 2-324 251-561 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 1.2E-49 2.5E-54 357.8 32.6 313 4-326 216-625 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 4E-48 8.7E-53 348.0 32.4 305 7-320 149-453 (857)
7 PRK11788 tetratricopeptide rep 100.0 4.6E-24 9.9E-29 177.1 35.1 301 17-325 42-352 (389)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 3E-23 6.4E-28 190.4 38.6 301 9-318 566-898 (899)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 1.1E-22 2.3E-27 186.8 38.9 303 7-320 530-832 (899)
10 PRK11788 tetratricopeptide rep 99.9 1E-22 2.2E-27 169.1 30.9 278 8-292 67-354 (389)
11 PRK15174 Vi polysaccharide exp 99.9 2.5E-20 5.4E-25 162.4 38.3 305 9-323 75-384 (656)
12 PRK15174 Vi polysaccharide exp 99.9 5.3E-20 1.1E-24 160.4 36.8 302 13-323 45-350 (656)
13 TIGR00990 3a0801s09 mitochondr 99.9 1.4E-18 3E-23 151.9 38.4 310 6-322 156-573 (615)
14 TIGR00990 3a0801s09 mitochondr 99.9 9.9E-18 2.1E-22 146.5 38.3 302 13-322 130-498 (615)
15 PRK11447 cellulose synthase su 99.9 4.7E-17 1E-21 151.3 39.2 307 9-321 302-701 (1157)
16 KOG4626 O-linked N-acetylgluco 99.8 3.4E-18 7.3E-23 138.9 24.0 305 7-321 113-452 (966)
17 PRK11447 cellulose synthase su 99.8 1.3E-16 2.7E-21 148.5 37.0 295 18-324 359-745 (1157)
18 PRK10049 pgaA outer membrane p 99.8 4.2E-16 9.1E-21 138.9 37.5 309 8-322 47-424 (765)
19 KOG4626 O-linked N-acetylgluco 99.8 1.4E-17 3E-22 135.3 24.5 302 10-322 150-487 (966)
20 PRK10747 putative protoheme IX 99.8 4.4E-16 9.5E-21 128.5 34.0 285 23-321 97-391 (398)
21 TIGR00540 hemY_coli hemY prote 99.8 6.6E-16 1.4E-20 128.1 33.9 292 21-319 95-398 (409)
22 PRK10049 pgaA outer membrane p 99.8 1.7E-15 3.6E-20 135.1 37.0 310 7-322 80-458 (765)
23 PF13429 TPR_15: Tetratricopep 99.8 7.1E-19 1.5E-23 138.8 12.4 259 52-318 15-275 (280)
24 KOG4422 Uncharacterized conser 99.8 3E-15 6.5E-20 116.8 31.7 247 6-257 203-469 (625)
25 PF13429 TPR_15: Tetratricopep 99.8 9.3E-19 2E-23 138.2 11.7 262 15-284 13-276 (280)
26 PRK09782 bacteriophage N4 rece 99.8 3.9E-14 8.4E-19 127.3 38.4 303 9-322 375-708 (987)
27 PRK09782 bacteriophage N4 rece 99.8 1.8E-14 3.9E-19 129.4 34.4 270 44-325 476-745 (987)
28 COG3071 HemY Uncharacterized e 99.8 5.7E-14 1.2E-18 108.8 32.1 293 23-326 97-396 (400)
29 PRK14574 hmsH outer membrane p 99.8 7.7E-14 1.7E-18 122.9 37.3 299 19-322 111-481 (822)
30 KOG1126 DNA-binding cell divis 99.7 3.6E-15 7.8E-20 122.3 25.5 288 25-324 334-624 (638)
31 KOG4422 Uncharacterized conser 99.7 2.1E-14 4.5E-19 112.2 28.0 308 10-322 116-464 (625)
32 PRK14574 hmsH outer membrane p 99.7 1.6E-13 3.4E-18 121.1 36.5 295 18-320 42-396 (822)
33 KOG2076 RNA polymerase III tra 99.7 1.1E-13 2.3E-18 117.4 32.7 309 6-318 135-510 (895)
34 PRK10747 putative protoheme IX 99.7 1E-13 2.2E-18 114.5 31.2 256 17-284 125-389 (398)
35 TIGR00540 hemY_coli hemY prote 99.7 1.1E-13 2.5E-18 114.9 30.6 274 7-284 114-398 (409)
36 KOG1155 Anaphase-promoting com 99.7 1.6E-13 3.5E-18 108.2 28.2 291 18-318 235-534 (559)
37 COG2956 Predicted N-acetylgluc 99.7 3.5E-13 7.7E-18 101.6 28.1 287 23-320 48-347 (389)
38 COG2956 Predicted N-acetylgluc 99.7 4.6E-13 1E-17 101.0 25.8 256 57-318 47-309 (389)
39 KOG1126 DNA-binding cell divis 99.7 1E-13 2.2E-18 113.9 23.5 268 10-288 353-623 (638)
40 PRK12370 invasion protein regu 99.7 7.8E-13 1.7E-17 114.0 29.7 268 42-321 253-536 (553)
41 TIGR02521 type_IV_pilW type IV 99.7 5.6E-13 1.2E-17 102.7 25.7 202 115-320 31-232 (234)
42 PRK12370 invasion protein regu 99.6 2.1E-12 4.5E-17 111.4 30.7 250 25-285 276-535 (553)
43 KOG1173 Anaphase-promoting com 99.6 1.5E-12 3.2E-17 105.4 27.1 291 5-303 239-534 (611)
44 COG3071 HemY Uncharacterized e 99.6 6.1E-12 1.3E-16 97.7 29.5 268 12-289 120-394 (400)
45 KOG1155 Anaphase-promoting com 99.6 4.8E-12 1E-16 100.1 29.3 250 60-319 242-494 (559)
46 TIGR02521 type_IV_pilW type IV 99.6 2E-12 4.4E-17 99.6 25.2 198 81-283 32-230 (234)
47 PF12569 NARP1: NMDA receptor- 99.6 1.6E-11 3.4E-16 102.9 31.5 295 16-320 10-334 (517)
48 KOG0495 HAT repeat protein [RN 99.6 5.6E-11 1.2E-15 98.2 33.5 264 11-283 517-780 (913)
49 KOG1129 TPR repeat-containing 99.6 4E-13 8.7E-18 101.6 19.4 229 49-284 227-457 (478)
50 KOG2076 RNA polymerase III tra 99.6 1.5E-11 3.2E-16 104.8 30.8 270 50-322 144-480 (895)
51 KOG0547 Translocase of outer m 99.6 1.1E-11 2.4E-16 98.8 27.6 219 94-319 340-565 (606)
52 KOG2003 TPR repeat-containing 99.6 5E-12 1.1E-16 100.1 25.6 280 18-306 427-709 (840)
53 KOG4318 Bicoid mRNA stability 99.6 1.8E-13 4E-18 115.9 18.7 250 1-271 16-286 (1088)
54 KOG0495 HAT repeat protein [RN 99.6 3.9E-11 8.4E-16 99.1 30.8 304 10-322 550-882 (913)
55 KOG2002 TPR-containing nuclear 99.6 1.3E-11 2.8E-16 106.0 27.3 308 9-322 413-747 (1018)
56 KOG1129 TPR repeat-containing 99.6 1.2E-12 2.5E-17 99.1 18.6 234 11-251 224-459 (478)
57 KOG2003 TPR repeat-containing 99.5 1.4E-11 3.1E-16 97.5 22.7 260 55-322 429-691 (840)
58 PF12569 NARP1: NMDA receptor- 99.5 1.6E-10 3.6E-15 96.9 28.8 265 51-324 10-295 (517)
59 KOG2002 TPR-containing nuclear 99.5 3.6E-10 7.7E-15 97.4 30.9 306 7-319 267-592 (1018)
60 COG3063 PilF Tfp pilus assembl 99.5 1.3E-10 2.8E-15 84.0 23.1 193 121-317 41-233 (250)
61 PF13041 PPR_2: PPR repeat fam 99.5 1.2E-13 2.7E-18 77.6 6.1 49 8-56 1-49 (50)
62 KOG1840 Kinesin light chain [C 99.5 1.1E-10 2.3E-15 96.9 24.6 239 80-318 199-477 (508)
63 PRK11189 lipoprotein NlpI; Pro 99.5 2.4E-10 5.2E-15 90.7 25.8 227 58-295 39-274 (296)
64 PRK11189 lipoprotein NlpI; Pro 99.5 4.1E-10 9E-15 89.4 27.0 222 23-253 39-268 (296)
65 KOG1174 Anaphase-promoting com 99.5 1.1E-09 2.5E-14 85.8 28.3 309 6-323 190-503 (564)
66 PF13041 PPR_2: PPR repeat fam 99.5 2.7E-13 5.8E-18 76.2 6.4 49 43-91 1-49 (50)
67 KOG4318 Bicoid mRNA stability 99.5 2E-11 4.4E-16 103.8 20.2 257 31-309 11-289 (1088)
68 KOG1173 Anaphase-promoting com 99.5 2.8E-10 6.2E-15 92.5 25.8 273 44-323 243-521 (611)
69 KOG1915 Cell cycle control pro 99.4 4E-09 8.8E-14 84.3 30.3 308 6-321 170-537 (677)
70 KOG1840 Kinesin light chain [C 99.4 1.2E-10 2.6E-15 96.6 22.6 244 40-283 194-477 (508)
71 KOG0547 Translocase of outer m 99.4 1.6E-10 3.5E-15 92.3 21.7 224 55-284 336-565 (606)
72 COG3063 PilF Tfp pilus assembl 99.4 8.5E-10 1.8E-14 79.9 23.1 199 47-250 37-236 (250)
73 cd05804 StaR_like StaR_like; a 99.4 2.9E-08 6.2E-13 81.7 33.5 309 10-321 6-337 (355)
74 KOG1174 Anaphase-promoting com 99.4 3.5E-09 7.7E-14 83.2 25.5 271 6-286 228-501 (564)
75 PF04733 Coatomer_E: Coatomer 99.3 4.9E-10 1.1E-14 87.7 20.1 251 18-285 9-265 (290)
76 PF04733 Coatomer_E: Coatomer 99.3 2.9E-10 6.4E-15 89.0 17.6 253 53-322 9-267 (290)
77 KOG1915 Cell cycle control pro 99.3 5.6E-08 1.2E-12 78.0 29.5 163 11-178 108-272 (677)
78 KOG4162 Predicted calmodulin-b 99.3 8.8E-08 1.9E-12 81.2 31.0 131 193-327 658-790 (799)
79 cd05804 StaR_like StaR_like; a 99.3 1.3E-07 2.8E-12 77.8 31.3 275 45-322 6-295 (355)
80 KOG4340 Uncharacterized conser 99.3 1.6E-08 3.4E-13 76.3 22.5 310 1-317 1-372 (459)
81 KOG1156 N-terminal acetyltrans 99.2 2.8E-07 6.1E-12 76.8 30.5 95 225-322 375-470 (700)
82 KOG1070 rRNA processing protei 99.2 5.5E-08 1.2E-12 87.4 26.6 244 68-316 1447-1696(1710)
83 KOG1156 N-terminal acetyltrans 99.2 3E-07 6.5E-12 76.6 27.3 309 6-325 3-322 (700)
84 PRK14720 transcript cleavage f 99.2 7.4E-08 1.6E-12 85.3 25.3 235 8-267 29-268 (906)
85 KOG3785 Uncharacterized conser 99.1 9.4E-08 2E-12 74.0 22.6 100 226-329 398-499 (557)
86 KOG1125 TPR repeat-containing 99.1 3.6E-08 7.9E-13 80.8 20.8 253 54-313 294-564 (579)
87 KOG1125 TPR repeat-containing 99.1 1.3E-08 2.9E-13 83.3 17.4 227 88-321 293-528 (579)
88 PLN02789 farnesyltranstransfer 99.1 5.8E-07 1.3E-11 71.6 26.3 214 48-268 40-267 (320)
89 PLN02789 farnesyltranstransfer 99.1 5.1E-07 1.1E-11 71.9 25.9 215 12-233 39-267 (320)
90 KOG2047 mRNA splicing factor [ 99.1 2.5E-06 5.5E-11 71.3 30.2 101 153-253 390-509 (835)
91 KOG0624 dsRNA-activated protei 99.1 1.9E-06 4E-11 66.7 28.1 297 14-322 42-372 (504)
92 KOG1128 Uncharacterized conser 99.1 2.1E-07 4.6E-12 78.5 23.7 240 5-266 393-633 (777)
93 KOG1070 rRNA processing protei 99.0 8.9E-07 1.9E-11 80.0 26.6 243 28-278 1443-1693(1710)
94 PF12854 PPR_1: PPR repeat 99.0 4.4E-10 9.6E-15 56.7 3.9 33 4-36 1-33 (34)
95 PRK04841 transcriptional regul 99.0 3E-06 6.6E-11 78.7 31.9 308 15-322 414-762 (903)
96 KOG3081 Vesicle coat complex C 99.0 1.3E-06 2.8E-11 65.1 23.2 258 7-284 7-270 (299)
97 KOG1128 Uncharacterized conser 99.0 6.7E-08 1.4E-12 81.4 18.2 223 78-322 396-618 (777)
98 TIGR03302 OM_YfiO outer membra 99.0 1.7E-07 3.8E-12 72.2 19.8 185 44-250 32-232 (235)
99 TIGR03302 OM_YfiO outer membra 99.0 1.9E-07 4.2E-12 72.0 20.0 186 8-213 31-231 (235)
100 KOG0624 dsRNA-activated protei 99.0 5.5E-06 1.2E-10 64.2 26.4 272 8-286 67-371 (504)
101 KOG0548 Molecular co-chaperone 99.0 6.2E-06 1.3E-10 67.6 27.2 191 126-322 235-457 (539)
102 COG5010 TadD Flp pilus assembl 99.0 7.6E-07 1.6E-11 66.2 19.8 164 114-283 66-229 (257)
103 PRK10370 formate-dependent nit 98.9 6.9E-07 1.5E-11 66.3 19.8 118 93-213 52-172 (198)
104 KOG4340 Uncharacterized conser 98.9 2.1E-06 4.7E-11 65.1 22.0 268 9-283 43-373 (459)
105 PRK14720 transcript cleavage f 98.9 8.9E-07 1.9E-11 78.7 23.2 220 43-302 29-268 (906)
106 KOG2376 Signal recognition par 98.9 1.7E-05 3.8E-10 65.8 30.2 194 13-213 15-252 (652)
107 PRK10370 formate-dependent nit 98.9 6E-07 1.3E-11 66.6 18.7 156 122-294 23-181 (198)
108 PRK15359 type III secretion sy 98.9 2.3E-07 5E-12 65.1 15.4 95 48-144 27-121 (144)
109 KOG4162 Predicted calmodulin-b 98.9 6.8E-06 1.5E-10 70.2 26.2 254 26-285 460-783 (799)
110 PF12854 PPR_1: PPR repeat 98.9 2.9E-09 6.4E-14 53.7 3.9 32 40-71 2-33 (34)
111 COG5010 TadD Flp pilus assembl 98.9 1.4E-06 3.1E-11 64.8 19.3 159 84-247 70-228 (257)
112 PRK04841 transcriptional regul 98.9 2E-05 4.3E-10 73.4 31.7 301 20-320 384-720 (903)
113 KOG2047 mRNA splicing factor [ 98.9 2.8E-05 6.1E-10 65.4 29.8 292 12-309 389-712 (835)
114 KOG3785 Uncharacterized conser 98.9 1.2E-05 2.7E-10 62.7 24.7 58 261-318 398-455 (557)
115 KOG1914 mRNA cleavage and poly 98.9 2.6E-05 5.7E-10 64.2 29.7 132 186-319 367-500 (656)
116 KOG3081 Vesicle coat complex C 98.9 1.2E-05 2.5E-10 60.2 23.1 252 53-322 16-273 (299)
117 PRK15179 Vi polysaccharide bio 98.8 1.8E-06 3.9E-11 75.8 21.4 137 40-179 81-217 (694)
118 PRK15359 type III secretion sy 98.8 6.9E-07 1.5E-11 62.7 15.6 110 65-180 13-122 (144)
119 PRK15179 Vi polysaccharide bio 98.8 7.3E-06 1.6E-10 72.1 24.6 135 76-213 82-216 (694)
120 KOG2376 Signal recognition par 98.8 6.4E-05 1.4E-09 62.6 30.3 148 166-318 357-518 (652)
121 KOG3060 Uncharacterized conser 98.8 2.6E-05 5.7E-10 58.0 22.0 186 24-213 26-219 (289)
122 TIGR02552 LcrH_SycD type III s 98.8 1E-06 2.3E-11 61.4 14.5 97 46-144 18-114 (135)
123 COG4783 Putative Zn-dependent 98.7 4.9E-05 1.1E-09 61.9 24.5 141 122-285 313-454 (484)
124 TIGR02552 LcrH_SycD type III s 98.7 1.4E-06 3.1E-11 60.7 14.4 109 68-179 6-114 (135)
125 KOG0985 Vesicle coat protein c 98.7 2.7E-05 5.8E-10 68.9 24.4 211 79-316 1103-1337(1666)
126 KOG3616 Selective LIM binding 98.7 6.9E-06 1.5E-10 70.1 20.3 166 90-281 742-907 (1636)
127 KOG2053 Mitochondrial inherita 98.7 0.00018 3.9E-09 63.0 30.1 227 20-253 19-258 (932)
128 KOG3060 Uncharacterized conser 98.7 5.2E-05 1.1E-09 56.5 22.1 191 58-253 25-223 (289)
129 KOG1127 TPR repeat-containing 98.7 6.6E-06 1.4E-10 72.3 19.4 162 11-177 493-657 (1238)
130 COG4783 Putative Zn-dependent 98.6 4.3E-05 9.4E-10 62.2 21.9 201 24-250 251-454 (484)
131 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 5E-06 1.1E-10 67.8 15.2 125 187-318 171-295 (395)
132 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 4.9E-06 1.1E-10 67.8 15.0 127 46-178 170-296 (395)
133 KOG1914 mRNA cleavage and poly 98.6 0.00028 6.1E-09 58.4 27.3 120 201-323 347-467 (656)
134 PF09976 TPR_21: Tetratricopep 98.5 9.2E-06 2E-10 57.3 14.4 127 187-316 14-143 (145)
135 KOG3617 WD40 and TPR repeat-co 98.5 3.6E-05 7.9E-10 66.7 19.7 229 20-283 738-994 (1416)
136 KOG2053 Mitochondrial inherita 98.5 0.00052 1.1E-08 60.2 26.6 225 55-286 19-256 (932)
137 KOG3617 WD40 and TPR repeat-co 98.5 7.7E-05 1.7E-09 64.8 21.4 156 9-177 756-939 (1416)
138 PF09976 TPR_21: Tetratricopep 98.5 1.3E-05 2.8E-10 56.5 14.5 85 53-139 56-142 (145)
139 KOG0985 Vesicle coat protein c 98.5 0.00023 4.9E-09 63.4 24.0 241 44-317 1103-1367(1666)
140 KOG0548 Molecular co-chaperone 98.5 0.00041 9E-09 57.3 26.6 202 85-294 229-462 (539)
141 PF10037 MRP-S27: Mitochondria 98.4 7.7E-06 1.7E-10 67.0 13.3 124 181-304 62-186 (429)
142 TIGR00756 PPR pentatricopeptid 98.4 4.3E-07 9.4E-12 46.5 3.9 33 12-44 2-34 (35)
143 PF13812 PPR_3: Pentatricopept 98.4 5.5E-07 1.2E-11 45.7 3.9 32 12-43 3-34 (34)
144 KOG3616 Selective LIM binding 98.4 0.00011 2.3E-09 63.2 19.3 133 161-316 743-875 (1636)
145 PF10037 MRP-S27: Mitochondria 98.4 1.6E-05 3.5E-10 65.2 13.8 123 76-198 62-186 (429)
146 TIGR00756 PPR pentatricopeptid 98.4 8.3E-07 1.8E-11 45.4 4.1 33 47-79 2-34 (35)
147 PF13812 PPR_3: Pentatricopept 98.4 9E-07 1.9E-11 44.9 4.0 33 46-78 2-34 (34)
148 TIGR02795 tol_pal_ybgF tol-pal 98.4 3.1E-05 6.6E-10 52.6 12.8 99 12-110 4-106 (119)
149 cd00189 TPR Tetratricopeptide 98.3 1.8E-05 3.9E-10 51.1 10.9 94 225-320 4-97 (100)
150 PRK15363 pathogenicity island 98.3 7E-05 1.5E-09 52.1 13.5 94 49-144 39-132 (157)
151 KOG1127 TPR repeat-containing 98.3 0.00033 7.1E-09 62.2 20.3 218 95-317 473-697 (1238)
152 PF12895 Apc3: Anaphase-promot 98.3 2.4E-06 5.2E-11 53.9 5.7 79 59-139 3-82 (84)
153 PF12895 Apc3: Anaphase-promot 98.3 2.4E-06 5.2E-11 53.9 5.5 81 234-316 2-83 (84)
154 TIGR02795 tol_pal_ybgF tol-pal 98.3 5E-05 1.1E-09 51.5 12.5 99 187-285 4-105 (119)
155 cd00189 TPR Tetratricopeptide 98.3 2.9E-05 6.2E-10 50.1 10.9 88 52-141 7-94 (100)
156 PF08579 RPM2: Mitochondrial r 98.2 3.9E-05 8.5E-10 49.5 10.0 76 51-126 31-115 (120)
157 PRK10866 outer membrane biogen 98.2 0.0013 2.7E-08 50.7 20.4 185 44-248 31-239 (243)
158 PF08579 RPM2: Mitochondrial r 98.2 3.1E-05 6.7E-10 50.0 9.4 79 14-92 29-116 (120)
159 CHL00033 ycf3 photosystem I as 98.2 7.8E-05 1.7E-09 54.1 12.9 81 45-126 35-117 (168)
160 PF05843 Suf: Suppressor of fo 98.2 7.1E-05 1.5E-09 59.0 13.4 143 151-299 2-148 (280)
161 PRK15363 pathogenicity island 98.2 9.7E-05 2.1E-09 51.4 12.1 98 80-179 35-132 (157)
162 PLN03088 SGT1, suppressor of 98.2 8.9E-05 1.9E-09 60.7 14.0 92 17-110 9-100 (356)
163 PLN03088 SGT1, suppressor of 98.2 0.00012 2.6E-09 59.9 14.3 92 52-145 9-100 (356)
164 PRK02603 photosystem I assembl 98.1 0.0003 6.4E-09 51.3 14.7 91 44-135 34-126 (172)
165 PF05843 Suf: Suppressor of fo 98.1 0.00014 3E-09 57.4 13.8 129 82-213 3-135 (280)
166 PF01535 PPR: PPR repeat; Int 98.1 5.3E-06 1.2E-10 40.9 3.4 29 12-40 2-30 (31)
167 PRK10866 outer membrane biogen 98.1 0.0028 6.1E-08 48.8 20.4 58 261-318 180-239 (243)
168 PRK02603 photosystem I assembl 98.1 0.00027 5.9E-09 51.5 13.2 92 185-277 35-127 (172)
169 KOG0550 Molecular chaperone (D 98.1 0.00093 2E-08 53.6 16.5 262 53-324 57-354 (486)
170 PF04840 Vps16_C: Vps16, C-ter 98.0 0.004 8.7E-08 49.9 25.5 109 186-315 178-286 (319)
171 CHL00033 ycf3 photosystem I as 98.0 0.00023 4.9E-09 51.7 12.5 96 186-282 36-139 (168)
172 PRK10153 DNA-binding transcrip 98.0 0.0011 2.3E-08 57.0 18.1 65 184-251 419-483 (517)
173 PRK10153 DNA-binding transcrip 98.0 0.001 2.2E-08 57.1 17.8 145 146-295 333-490 (517)
174 PF01535 PPR: PPR repeat; Int 98.0 8.1E-06 1.8E-10 40.3 3.2 29 47-75 2-30 (31)
175 PF14938 SNAP: Soluble NSF att 98.0 0.0014 3E-08 52.0 16.6 132 117-248 116-264 (282)
176 COG4700 Uncharacterized protei 97.9 0.003 6.6E-08 45.1 18.0 135 147-283 86-220 (251)
177 PF14559 TPR_19: Tetratricopep 97.9 5.6E-05 1.2E-09 45.4 6.4 51 93-144 4-54 (68)
178 PF06239 ECSIT: Evolutionarily 97.9 0.00031 6.7E-09 51.4 10.7 88 44-131 46-154 (228)
179 KOG0553 TPR repeat-containing 97.9 0.0003 6.4E-09 54.0 11.0 103 89-195 90-192 (304)
180 PF13414 TPR_11: TPR repeat; P 97.9 9.1E-05 2E-09 44.6 6.9 63 257-320 4-67 (69)
181 PF14938 SNAP: Soluble NSF att 97.9 0.0011 2.3E-08 52.6 14.7 199 115-318 35-261 (282)
182 PF13414 TPR_11: TPR repeat; P 97.9 0.00012 2.7E-09 44.0 7.4 63 80-143 3-66 (69)
183 KOG0553 TPR repeat-containing 97.9 0.00031 6.7E-09 53.9 10.6 117 98-231 76-192 (304)
184 PF13432 TPR_16: Tetratricopep 97.9 0.00012 2.7E-09 43.4 7.1 56 88-144 5-60 (65)
185 PF06239 ECSIT: Evolutionarily 97.9 0.00049 1.1E-08 50.4 11.1 100 65-166 34-154 (228)
186 KOG2796 Uncharacterized conser 97.8 0.0013 2.7E-08 49.7 13.2 147 26-180 165-316 (366)
187 PF12688 TPR_5: Tetratrico pep 97.8 0.0016 3.5E-08 43.7 12.7 92 16-107 7-102 (120)
188 PF12688 TPR_5: Tetratrico pep 97.8 0.0028 6E-08 42.6 13.4 89 53-142 9-102 (120)
189 COG4235 Cytochrome c biogenesi 97.8 0.0024 5.2E-08 49.4 14.6 113 182-299 153-268 (287)
190 PF13432 TPR_16: Tetratricopep 97.8 0.00017 3.8E-09 42.7 7.1 55 229-284 5-59 (65)
191 PF14559 TPR_19: Tetratricopep 97.8 0.00012 2.5E-09 44.0 5.9 52 22-74 3-54 (68)
192 COG4235 Cytochrome c biogenesi 97.7 0.0046 1E-07 47.8 15.0 102 77-180 153-257 (287)
193 PF13525 YfiO: Outer membrane 97.7 0.011 2.4E-07 44.4 18.2 81 225-311 114-198 (203)
194 PF13525 YfiO: Outer membrane 97.7 0.011 2.4E-07 44.3 18.2 50 226-275 146-197 (203)
195 KOG2796 Uncharacterized conser 97.7 0.013 2.7E-07 44.6 16.2 185 22-225 134-323 (366)
196 PF03704 BTAD: Bacterial trans 97.7 0.0039 8.4E-08 44.0 13.4 69 83-152 65-138 (146)
197 KOG2041 WD40 repeat protein [G 97.7 0.021 4.6E-07 49.5 19.1 90 181-284 848-951 (1189)
198 PRK10803 tol-pal system protei 97.6 0.0024 5.3E-08 49.6 12.8 99 187-285 145-246 (263)
199 KOG2280 Vacuolar assembly/sort 97.6 0.039 8.5E-07 48.2 22.1 115 182-316 681-795 (829)
200 PRK10803 tol-pal system protei 97.6 0.0024 5.2E-08 49.7 12.2 96 83-179 146-246 (263)
201 PF03704 BTAD: Bacterial trans 97.6 0.0082 1.8E-07 42.4 14.0 72 223-295 64-140 (146)
202 COG4700 Uncharacterized protei 97.6 0.014 3E-07 41.9 18.5 134 181-317 85-219 (251)
203 PF13371 TPR_9: Tetratricopept 97.5 0.00065 1.4E-08 41.4 6.6 57 229-286 3-59 (73)
204 KOG1130 Predicted G-alpha GTPa 97.5 0.0023 4.9E-08 51.6 10.7 49 19-68 26-78 (639)
205 PF13371 TPR_9: Tetratricopept 97.5 0.0011 2.4E-08 40.3 7.3 50 92-142 7-56 (73)
206 PF12921 ATP13: Mitochondrial 97.5 0.0043 9.2E-08 42.2 10.5 50 215-264 46-96 (126)
207 PF12921 ATP13: Mitochondrial 97.4 0.002 4.3E-08 43.7 8.8 99 115-233 2-100 (126)
208 PRK15331 chaperone protein Sic 97.4 0.02 4.3E-07 40.4 14.8 90 87-178 44-133 (165)
209 PRK15331 chaperone protein Sic 97.4 0.0091 2E-07 42.1 11.9 92 51-144 43-134 (165)
210 PF08631 SPO22: Meiosis protei 97.4 0.047 1E-06 43.3 24.9 123 20-144 3-150 (278)
211 PF13281 DUF4071: Domain of un 97.4 0.057 1.2E-06 44.0 18.9 169 114-285 140-334 (374)
212 KOG0550 Molecular chaperone (D 97.3 0.059 1.3E-06 43.8 18.3 263 17-285 56-350 (486)
213 KOG2041 WD40 repeat protein [G 97.3 0.04 8.7E-07 47.9 16.8 239 42-319 689-951 (1189)
214 COG3898 Uncharacterized membra 97.3 0.069 1.5E-06 43.2 26.0 296 13-324 85-396 (531)
215 PF13281 DUF4071: Domain of un 97.2 0.085 1.8E-06 43.1 21.6 75 51-125 147-227 (374)
216 PF13424 TPR_12: Tetratricopep 97.2 0.0021 4.7E-08 39.6 6.2 24 224-247 8-31 (78)
217 PF13424 TPR_12: Tetratricopep 97.1 0.002 4.3E-08 39.8 5.5 21 85-105 51-71 (78)
218 KOG1538 Uncharacterized conser 97.0 0.19 4E-06 43.6 20.1 253 6-284 552-845 (1081)
219 PF10300 DUF3808: Protein of u 97.0 0.09 1.9E-06 45.1 16.4 166 153-322 191-378 (468)
220 PLN03098 LPA1 LOW PSII ACCUMUL 97.0 0.028 6E-07 46.6 12.2 98 183-287 73-176 (453)
221 COG3118 Thioredoxin domain-con 96.9 0.14 3E-06 39.9 17.5 50 91-141 145-194 (304)
222 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.029 6.3E-07 46.5 11.7 65 79-144 74-141 (453)
223 PF07035 Mic1: Colon cancer-as 96.9 0.089 1.9E-06 37.6 16.7 145 170-329 14-162 (167)
224 COG3898 Uncharacterized membra 96.9 0.18 4E-06 40.9 30.7 273 25-317 68-355 (531)
225 KOG2280 Vacuolar assembly/sort 96.8 0.32 7E-06 42.9 23.9 301 2-318 424-771 (829)
226 KOG1130 Predicted G-alpha GTPa 96.8 0.0099 2.1E-07 48.1 8.3 269 53-322 25-346 (639)
227 KOG0543 FKBP-type peptidyl-pro 96.8 0.074 1.6E-06 43.2 12.8 61 117-178 259-319 (397)
228 KOG4555 TPR repeat-containing 96.8 0.047 1E-06 36.7 9.8 90 194-286 52-145 (175)
229 PF04053 Coatomer_WDAD: Coatom 96.7 0.084 1.8E-06 44.6 13.7 156 90-281 271-427 (443)
230 KOG2114 Vacuolar assembly/sort 96.7 0.35 7.5E-06 43.3 17.3 142 87-247 375-516 (933)
231 KOG0543 FKBP-type peptidyl-pro 96.7 0.071 1.5E-06 43.3 12.4 97 222-321 258-356 (397)
232 COG1729 Uncharacterized protei 96.7 0.09 1.9E-06 40.4 12.3 87 58-144 154-244 (262)
233 PF04053 Coatomer_WDAD: Coatom 96.7 0.13 2.7E-06 43.6 14.2 157 19-211 270-428 (443)
234 PF10300 DUF3808: Protein of u 96.6 0.37 8.1E-06 41.4 17.6 159 122-283 195-374 (468)
235 KOG1538 Uncharacterized conser 96.6 0.083 1.8E-06 45.6 12.6 249 43-321 554-847 (1081)
236 COG1729 Uncharacterized protei 96.6 0.06 1.3E-06 41.4 10.8 87 233-319 153-243 (262)
237 COG5107 RNA14 Pre-mRNA 3'-end 96.6 0.34 7.3E-06 40.2 27.1 81 6-89 38-118 (660)
238 PF09205 DUF1955: Domain of un 96.6 0.12 2.6E-06 34.9 13.7 60 261-321 91-150 (161)
239 KOG1585 Protein required for f 96.6 0.22 4.8E-06 37.7 15.9 25 83-107 34-58 (308)
240 PF13512 TPR_18: Tetratricopep 96.5 0.16 3.5E-06 35.1 11.7 77 192-268 17-94 (142)
241 KOG2610 Uncharacterized conser 96.4 0.35 7.5E-06 38.5 16.0 152 22-176 115-273 (491)
242 PF04840 Vps16_C: Vps16, C-ter 96.4 0.38 8.3E-06 38.8 25.5 111 151-282 178-288 (319)
243 KOG4555 TPR repeat-containing 96.4 0.17 3.6E-06 34.2 10.6 92 53-145 51-145 (175)
244 PF13428 TPR_14: Tetratricopep 96.3 0.021 4.5E-07 30.6 5.3 26 84-109 5-30 (44)
245 smart00299 CLH Clathrin heavy 96.3 0.21 4.7E-06 34.8 15.4 18 192-209 76-93 (140)
246 KOG2610 Uncharacterized conser 96.3 0.18 3.9E-06 40.1 11.9 152 57-210 115-272 (491)
247 PF13428 TPR_14: Tetratricopep 96.2 0.026 5.7E-07 30.2 5.2 24 226-249 6-29 (44)
248 PF07079 DUF1347: Protein of u 96.2 0.61 1.3E-05 38.8 26.8 115 201-319 396-523 (549)
249 PF08631 SPO22: Meiosis protei 96.2 0.49 1.1E-05 37.6 25.3 123 56-179 4-150 (278)
250 KOG3941 Intermediate in Toll s 96.1 0.088 1.9E-06 40.6 9.3 89 42-130 64-173 (406)
251 COG5107 RNA14 Pre-mRNA 3'-end 96.0 0.73 1.6E-05 38.4 18.1 128 82-213 399-530 (660)
252 COG3629 DnrI DNA-binding trans 96.0 0.13 2.8E-06 40.2 10.0 59 187-247 155-213 (280)
253 PRK11906 transcriptional regul 96.0 0.8 1.7E-05 38.4 16.3 113 96-211 274-398 (458)
254 KOG3941 Intermediate in Toll s 95.9 0.11 2.5E-06 40.1 9.1 90 7-96 64-174 (406)
255 PF13170 DUF4003: Protein of u 95.9 0.7 1.5E-05 36.9 15.1 22 168-189 200-221 (297)
256 KOG1941 Acetylcholine receptor 95.9 0.7 1.5E-05 37.3 13.4 229 20-248 16-273 (518)
257 PF07079 DUF1347: Protein of u 95.9 0.89 1.9E-05 37.9 24.3 138 20-162 16-179 (549)
258 PF09205 DUF1955: Domain of un 95.8 0.34 7.3E-06 32.9 12.5 140 20-181 12-151 (161)
259 COG3118 Thioredoxin domain-con 95.8 0.69 1.5E-05 36.3 17.4 51 125-176 144-194 (304)
260 PRK11906 transcriptional regul 95.8 1 2.2E-05 37.9 16.1 82 61-144 320-401 (458)
261 smart00299 CLH Clathrin heavy 95.8 0.41 8.9E-06 33.4 15.4 127 153-303 10-137 (140)
262 COG3629 DnrI DNA-binding trans 95.7 0.19 4.1E-06 39.3 9.9 79 115-194 153-236 (280)
263 COG4105 ComL DNA uptake lipopr 95.7 0.71 1.5E-05 35.4 20.4 52 264-316 175-229 (254)
264 KOG1258 mRNA processing protei 95.6 1.3 2.9E-05 38.2 25.0 95 186-284 298-394 (577)
265 KOG2114 Vacuolar assembly/sort 95.6 1.7 3.8E-05 39.2 17.7 139 55-211 378-516 (933)
266 PF04184 ST7: ST7 protein; In 95.3 1.5 3.3E-05 37.2 21.0 55 157-211 266-321 (539)
267 COG4649 Uncharacterized protei 95.3 0.7 1.5E-05 33.1 13.7 133 45-178 59-195 (221)
268 COG4105 ComL DNA uptake lipopr 95.3 0.98 2.1E-05 34.7 20.4 175 89-283 43-231 (254)
269 PF10602 RPN7: 26S proteasome 95.3 0.37 8E-06 35.2 9.7 61 47-107 38-100 (177)
270 COG1747 Uncharacterized N-term 95.2 1.8 3.8E-05 36.9 24.6 180 77-264 63-247 (711)
271 PF07035 Mic1: Colon cancer-as 95.1 0.84 1.8E-05 32.7 15.7 29 138-166 17-45 (167)
272 COG0457 NrfG FOG: TPR repeat [ 95.0 1.1 2.4E-05 33.9 28.8 224 58-285 36-265 (291)
273 PF10602 RPN7: 26S proteasome 95.0 0.55 1.2E-05 34.3 10.0 63 186-249 37-101 (177)
274 PF13170 DUF4003: Protein of u 95.0 1.5 3.2E-05 35.1 21.1 24 239-262 200-223 (297)
275 PF09613 HrpB1_HrpK: Bacterial 95.0 0.85 1.8E-05 32.3 12.4 18 232-249 55-72 (160)
276 PF00637 Clathrin: Region in C 94.9 0.0015 3.3E-08 45.9 -3.4 45 127-171 19-63 (143)
277 COG4649 Uncharacterized protei 94.9 0.96 2.1E-05 32.5 13.5 136 149-286 58-197 (221)
278 PF13431 TPR_17: Tetratricopep 94.9 0.034 7.3E-07 27.8 2.4 23 112-134 10-32 (34)
279 PF13176 TPR_7: Tetratricopept 94.7 0.035 7.6E-07 28.1 2.3 23 259-281 2-24 (36)
280 PF13176 TPR_7: Tetratricopept 94.7 0.082 1.8E-06 26.7 3.7 25 294-318 2-26 (36)
281 COG0457 NrfG FOG: TPR repeat [ 94.7 1.4 3E-05 33.4 28.5 223 24-250 37-265 (291)
282 KOG4570 Uncharacterized conser 94.6 0.32 6.9E-06 38.3 8.0 103 145-250 59-164 (418)
283 PF02259 FAT: FAT domain; Int 94.6 2.2 4.8E-05 35.2 21.0 66 183-249 144-212 (352)
284 PF13512 TPR_18: Tetratricopep 94.6 1 2.2E-05 31.3 12.5 55 90-144 20-76 (142)
285 KOG4570 Uncharacterized conser 94.5 0.46 9.9E-06 37.5 8.7 48 61-108 116-163 (418)
286 PF13929 mRNA_stabil: mRNA sta 94.5 1.8 4E-05 34.0 15.0 137 165-301 143-288 (292)
287 KOG1585 Protein required for f 94.5 1.7 3.6E-05 33.2 17.8 57 187-244 192-250 (308)
288 KOG1941 Acetylcholine receptor 94.4 2.3 5E-05 34.5 15.4 130 84-213 126-274 (518)
289 PF02284 COX5A: Cytochrome c o 94.2 0.91 2E-05 29.2 9.1 60 239-299 28-87 (108)
290 KOG1920 IkappaB kinase complex 94.2 5.3 0.00011 37.9 23.2 80 193-283 947-1026(1265)
291 cd00923 Cyt_c_Oxidase_Va Cytoc 94.2 0.58 1.3E-05 29.7 7.0 47 167-213 24-70 (103)
292 COG4785 NlpI Lipoprotein NlpI, 94.1 1.8 3.9E-05 32.4 12.6 163 112-286 96-267 (297)
293 PF13431 TPR_17: Tetratricopep 94.1 0.065 1.4E-06 26.7 2.4 21 290-310 12-32 (34)
294 KOG1464 COP9 signalosome, subu 93.9 2.4 5.2E-05 32.9 15.2 50 93-142 40-92 (440)
295 cd00923 Cyt_c_Oxidase_Va Cytoc 93.9 0.87 1.9E-05 29.0 7.4 46 62-107 24-69 (103)
296 PF04184 ST7: ST7 protein; In 93.6 4.1 9E-05 34.7 20.8 84 116-199 260-345 (539)
297 PF02284 COX5A: Cytochrome c o 93.5 1.3 2.8E-05 28.6 8.9 45 29-73 29-73 (108)
298 KOG4234 TPR repeat-containing 93.4 1.7 3.7E-05 32.1 9.3 97 193-292 103-202 (271)
299 PF00515 TPR_1: Tetratricopept 93.4 0.29 6.3E-06 24.1 4.2 27 258-284 3-29 (34)
300 PF11207 DUF2989: Protein of u 93.3 2.4 5.1E-05 31.4 10.0 80 54-135 116-198 (203)
301 PF07719 TPR_2: Tetratricopept 93.2 0.32 7E-06 23.8 4.2 25 259-283 4-28 (34)
302 KOG1920 IkappaB kinase complex 93.1 8.2 0.00018 36.7 19.5 117 147-282 932-1052(1265)
303 COG4785 NlpI Lipoprotein NlpI, 93.1 2.9 6.3E-05 31.4 16.8 181 59-252 79-268 (297)
304 PF13929 mRNA_stabil: mRNA sta 92.8 3.9 8.5E-05 32.2 15.7 81 147-227 199-284 (292)
305 PF11207 DUF2989: Protein of u 92.6 1.9 4.2E-05 31.9 8.8 79 231-311 117-198 (203)
306 COG4455 ImpE Protein of avirul 92.6 1.3 2.9E-05 33.1 7.9 77 12-89 3-81 (273)
307 PF00515 TPR_1: Tetratricopept 92.5 0.41 8.8E-06 23.5 4.0 25 118-142 4-28 (34)
308 PF09613 HrpB1_HrpK: Bacterial 92.5 2.8 6E-05 29.8 13.6 15 92-106 56-70 (160)
309 PF02259 FAT: FAT domain; Int 92.1 6 0.00013 32.6 23.4 189 16-213 4-212 (352)
310 PF13762 MNE1: Mitochondrial s 91.9 3 6.4E-05 29.2 8.6 100 34-133 26-133 (145)
311 PF07719 TPR_2: Tetratricopept 91.8 0.54 1.2E-05 23.0 4.0 23 120-142 6-28 (34)
312 PF00637 Clathrin: Region in C 91.8 0.11 2.3E-06 36.5 1.8 84 191-282 13-96 (143)
313 PF13374 TPR_10: Tetratricopep 91.6 0.45 9.7E-06 24.6 3.7 28 11-38 3-30 (42)
314 PF13374 TPR_10: Tetratricopep 91.6 0.52 1.1E-05 24.4 4.0 26 258-283 4-29 (42)
315 KOG1550 Extracellular protein 91.5 9.7 0.00021 33.9 25.5 176 26-213 228-425 (552)
316 PF10345 Cohesin_load: Cohesin 91.4 10 0.00023 34.2 26.5 184 28-212 39-252 (608)
317 KOG4234 TPR repeat-containing 91.4 4.4 9.5E-05 30.1 9.3 88 90-179 105-197 (271)
318 COG2976 Uncharacterized protei 91.1 4.8 0.0001 29.7 13.0 93 192-286 96-189 (207)
319 PRK15180 Vi polysaccharide bio 91.1 8.8 0.00019 32.7 14.1 125 17-145 296-421 (831)
320 TIGR03504 FimV_Cterm FimV C-te 91.1 0.35 7.7E-06 25.7 2.8 23 297-319 5-27 (44)
321 KOG2063 Vacuolar assembly/sort 91.0 13 0.00029 34.6 15.7 38 124-161 600-637 (877)
322 PF04097 Nic96: Nup93/Nic96; 90.9 12 0.00026 33.8 18.5 59 15-74 116-181 (613)
323 COG1747 Uncharacterized N-term 90.7 10 0.00022 32.6 25.1 181 112-302 63-250 (711)
324 PRK15180 Vi polysaccharide bio 90.4 10 0.00023 32.3 12.6 96 116-213 324-419 (831)
325 KOG1464 COP9 signalosome, subu 90.3 7.3 0.00016 30.4 19.4 201 5-206 21-252 (440)
326 COG2909 MalT ATP-dependent tra 90.3 15 0.00032 34.0 24.4 227 90-316 425-684 (894)
327 COG2976 Uncharacterized protei 90.1 6.1 0.00013 29.2 12.5 97 226-324 94-192 (207)
328 PF13174 TPR_6: Tetratricopept 90.1 0.9 2E-05 21.9 3.8 23 297-319 6-28 (33)
329 KOG4648 Uncharacterized conser 89.9 2.9 6.4E-05 33.7 8.0 47 160-207 107-153 (536)
330 KOG1258 mRNA processing protei 89.7 13 0.00029 32.5 18.7 33 199-233 455-487 (577)
331 KOG0276 Vesicle coat complex C 89.5 7.4 0.00016 34.1 10.5 153 20-212 596-748 (794)
332 PF10579 Rapsyn_N: Rapsyn N-te 89.3 1.9 4E-05 26.4 5.1 47 268-314 18-66 (80)
333 PF07721 TPR_4: Tetratricopept 89.3 0.7 1.5E-05 21.2 2.7 20 296-315 6-25 (26)
334 PF07163 Pex26: Pex26 protein; 89.1 9 0.0002 30.1 9.8 88 86-173 89-181 (309)
335 KOG4077 Cytochrome c oxidase, 89.1 2 4.4E-05 28.9 5.6 59 239-298 67-125 (149)
336 COG4455 ImpE Protein of avirul 88.9 4.5 9.7E-05 30.5 7.8 77 187-265 3-81 (273)
337 TIGR03504 FimV_Cterm FimV C-te 88.8 1.7 3.6E-05 23.2 4.3 22 227-248 5-26 (44)
338 PF13181 TPR_8: Tetratricopept 88.7 1 2.2E-05 22.0 3.4 26 294-319 4-29 (34)
339 PF13174 TPR_6: Tetratricopept 88.6 0.96 2.1E-05 21.8 3.2 18 90-107 10-27 (33)
340 PF13181 TPR_8: Tetratricopept 88.5 1.5 3.2E-05 21.4 3.9 27 258-284 3-29 (34)
341 KOG0686 COP9 signalosome, subu 88.5 13 0.00029 30.9 13.5 180 81-264 151-352 (466)
342 KOG4648 Uncharacterized conser 88.4 1.7 3.8E-05 34.9 5.9 94 193-292 105-199 (536)
343 TIGR02561 HrpB1_HrpK type III 87.5 8 0.00017 27.2 12.0 18 196-213 55-72 (153)
344 PRK11619 lytic murein transgly 87.3 23 0.00049 32.2 28.0 118 198-318 254-373 (644)
345 TIGR02561 HrpB1_HrpK type III 87.3 8.2 0.00018 27.1 12.3 17 127-143 56-72 (153)
346 PF06552 TOM20_plant: Plant sp 87.2 9.6 0.00021 27.8 9.4 61 97-160 52-123 (186)
347 KOG1586 Protein required for f 86.1 13 0.00029 28.4 18.8 18 55-72 24-41 (288)
348 KOG0276 Vesicle coat complex C 86.0 20 0.00043 31.7 11.0 132 117-282 616-747 (794)
349 KOG0687 26S proteasome regulat 85.5 18 0.00039 29.3 13.4 25 223-247 106-130 (393)
350 PF07163 Pex26: Pex26 protein; 85.4 16 0.00035 28.8 12.4 128 11-138 36-181 (309)
351 COG3947 Response regulator con 85.0 18 0.00038 28.8 10.2 55 121-176 285-339 (361)
352 KOG0890 Protein kinase of the 84.8 56 0.0012 34.3 20.3 62 221-285 1670-1731(2382)
353 KOG0991 Replication factor C, 84.7 16 0.00035 28.1 12.4 37 147-184 236-272 (333)
354 KOG0686 COP9 signalosome, subu 84.4 23 0.0005 29.6 14.0 23 13-35 153-175 (466)
355 PF10579 Rapsyn_N: Rapsyn N-te 84.2 3.6 7.8E-05 25.2 4.4 45 198-242 19-64 (80)
356 KOG1550 Extracellular protein 84.1 30 0.00066 30.8 20.5 180 96-286 228-427 (552)
357 smart00028 TPR Tetratricopepti 83.6 2.9 6.2E-05 19.2 3.6 25 259-283 4-28 (34)
358 PRK09687 putative lyase; Provi 83.1 22 0.00048 28.4 26.8 235 43-303 35-279 (280)
359 TIGR02508 type_III_yscG type I 83.0 10 0.00022 24.5 8.3 84 25-118 20-105 (115)
360 KOG2396 HAT (Half-A-TPR) repea 82.7 31 0.00067 29.8 22.2 241 64-319 301-558 (568)
361 KOG0890 Protein kinase of the 82.5 69 0.0015 33.7 25.4 298 15-324 1388-1735(2382)
362 COG0735 Fur Fe2+/Zn2+ uptake r 82.4 12 0.00026 26.3 7.3 55 215-270 15-69 (145)
363 PF06552 TOM20_plant: Plant sp 81.9 18 0.00038 26.5 9.2 95 96-195 7-123 (186)
364 COG2909 MalT ATP-dependent tra 81.7 45 0.00099 31.1 24.0 199 125-324 425-651 (894)
365 KOG4507 Uncharacterized conser 81.6 25 0.00053 31.1 9.8 88 91-179 618-705 (886)
366 KOG2297 Predicted translation 80.8 27 0.00059 28.0 19.4 18 258-275 323-340 (412)
367 KOG4642 Chaperone-dependent E3 80.4 25 0.00053 27.2 10.6 83 160-247 20-104 (284)
368 KOG4642 Chaperone-dependent E3 79.6 26 0.00057 27.0 10.6 81 57-141 22-104 (284)
369 PF11846 DUF3366: Domain of un 79.6 9.3 0.0002 28.4 6.4 30 219-248 142-171 (193)
370 KOG4077 Cytochrome c oxidase, 79.6 17 0.00036 24.8 9.0 61 63-124 67-127 (149)
371 PF11846 DUF3366: Domain of un 79.6 16 0.00034 27.2 7.6 52 233-284 120-172 (193)
372 PF08424 NRDE-2: NRDE-2, neces 79.4 33 0.00071 28.1 15.6 81 77-159 16-108 (321)
373 PF11663 Toxin_YhaV: Toxin wit 78.6 2.4 5.2E-05 28.9 2.6 29 23-53 108-136 (140)
374 COG3947 Response regulator con 78.3 33 0.00071 27.4 17.2 77 96-174 103-190 (361)
375 PF09454 Vps23_core: Vps23 cor 77.7 5.4 0.00012 23.5 3.6 51 254-305 6-56 (65)
376 PF07575 Nucleopor_Nup85: Nup8 77.5 17 0.00036 32.5 8.3 93 117-213 374-466 (566)
377 COG5159 RPN6 26S proteasome re 76.4 37 0.0008 27.0 11.4 21 296-316 130-150 (421)
378 PRK10941 hypothetical protein; 76.3 37 0.0008 26.9 10.1 67 156-223 187-253 (269)
379 PF12862 Apc5: Anaphase-promot 76.2 17 0.00038 23.2 6.3 54 232-285 9-70 (94)
380 COG5187 RPN7 26S proteasome re 76.2 38 0.00082 27.0 12.3 26 186-211 116-141 (412)
381 PF14669 Asp_Glu_race_2: Putat 76.1 29 0.00064 25.7 13.0 70 3-72 1-78 (233)
382 KOG4507 Uncharacterized conser 76.0 23 0.00049 31.3 8.1 91 231-322 617-707 (886)
383 PF11848 DUF3368: Domain of un 75.9 11 0.00023 20.6 4.5 31 268-298 14-44 (48)
384 PRK09687 putative lyase; Provi 75.7 39 0.00085 27.0 27.3 223 77-323 34-266 (280)
385 KOG2066 Vacuolar assembly/sort 75.6 67 0.0015 29.6 23.7 55 17-73 363-420 (846)
386 cd00280 TRFH Telomeric Repeat 75.5 30 0.00064 25.5 7.7 19 265-283 120-138 (200)
387 COG0735 Fur Fe2+/Zn2+ uptake r 75.4 24 0.00051 24.9 7.0 60 34-94 10-69 (145)
388 PF08424 NRDE-2: NRDE-2, neces 75.3 44 0.00095 27.4 16.9 26 297-322 160-185 (321)
389 PHA02875 ankyrin repeat protei 75.3 51 0.0011 28.0 15.8 78 18-103 7-88 (413)
390 PF07575 Nucleopor_Nup85: Nup8 75.1 35 0.00075 30.6 9.6 25 10-35 149-173 (566)
391 PF14689 SPOB_a: Sensor_kinase 74.9 14 0.0003 21.4 4.9 25 259-283 26-50 (62)
392 PRK10564 maltose regulon perip 74.3 6.9 0.00015 31.1 4.4 36 259-294 260-295 (303)
393 PF09670 Cas_Cas02710: CRISPR- 73.0 56 0.0012 27.5 10.8 56 123-179 139-198 (379)
394 KOG1308 Hsp70-interacting prot 72.3 4.1 8.9E-05 32.9 2.8 93 91-186 125-218 (377)
395 cd08819 CARD_MDA5_2 Caspase ac 72.2 22 0.00047 22.4 7.1 65 240-310 21-85 (88)
396 COG5108 RPO41 Mitochondrial DN 72.0 35 0.00076 30.7 8.4 91 190-283 33-130 (1117)
397 PF14689 SPOB_a: Sensor_kinase 71.7 12 0.00027 21.7 4.1 46 272-319 6-51 (62)
398 COG0790 FOG: TPR repeat, SEL1 70.7 53 0.0011 26.3 19.9 190 22-225 53-276 (292)
399 PRK12798 chemotaxis protein; R 70.3 66 0.0014 27.2 20.4 152 128-284 125-285 (421)
400 PRK11619 lytic murein transgly 69.0 94 0.002 28.5 25.4 117 163-283 254-373 (644)
401 PRK10564 maltose regulon perip 68.9 12 0.00026 29.8 4.7 30 48-77 260-289 (303)
402 PF11817 Foie-gras_1: Foie gra 68.8 39 0.00084 26.4 7.6 58 260-317 182-244 (247)
403 PF11848 DUF3368: Domain of un 68.7 17 0.00037 19.8 4.9 34 231-264 12-45 (48)
404 cd08819 CARD_MDA5_2 Caspase ac 68.1 27 0.00059 22.0 6.8 14 94-107 50-63 (88)
405 PF09670 Cas_Cas02710: CRISPR- 67.3 76 0.0017 26.8 10.2 56 18-74 139-198 (379)
406 KOG1308 Hsp70-interacting prot 67.0 4.2 9.2E-05 32.8 2.0 95 56-152 125-219 (377)
407 PF09986 DUF2225: Uncharacteri 66.4 56 0.0012 24.9 10.3 25 297-321 171-195 (214)
408 PF09477 Type_III_YscG: Bacter 65.8 36 0.00078 22.5 10.6 88 23-118 19-106 (116)
409 PF10366 Vps39_1: Vacuolar sor 65.4 23 0.00049 23.4 4.9 27 47-73 41-67 (108)
410 PF10345 Cohesin_load: Cohesin 65.3 1.1E+02 0.0024 27.9 28.3 165 11-176 60-251 (608)
411 COG5108 RPO41 Mitochondrial DN 65.0 98 0.0021 28.2 9.6 75 15-92 33-115 (1117)
412 KOG0376 Serine-threonine phosp 64.9 31 0.00068 29.5 6.5 105 52-161 11-116 (476)
413 PF11817 Foie-gras_1: Foie gra 64.5 67 0.0014 25.1 8.2 60 224-283 181-245 (247)
414 KOG2659 LisH motif-containing 64.5 62 0.0014 24.8 8.9 100 181-283 22-130 (228)
415 KOG0376 Serine-threonine phosp 64.1 29 0.00063 29.7 6.2 107 15-126 9-116 (476)
416 PRK10941 hypothetical protein; 64.0 72 0.0016 25.4 10.3 78 224-302 184-262 (269)
417 PRK11639 zinc uptake transcrip 62.8 57 0.0012 23.7 7.6 59 215-274 20-78 (169)
418 cd00280 TRFH Telomeric Repeat 62.8 60 0.0013 24.0 7.5 48 96-143 85-139 (200)
419 PF12793 SgrR_N: Sugar transpo 62.7 44 0.00095 22.4 7.3 71 208-280 6-94 (115)
420 KOG4521 Nuclear pore complex, 62.5 1.6E+02 0.0035 28.9 13.1 24 296-319 1375-1398(1480)
421 PF12862 Apc5: Anaphase-promot 62.4 38 0.00082 21.6 7.1 19 194-212 50-68 (94)
422 KOG4567 GTPase-activating prot 62.2 70 0.0015 25.9 7.5 71 205-281 263-343 (370)
423 KOG2297 Predicted translation 62.1 84 0.0018 25.4 14.1 21 221-241 321-341 (412)
424 TIGR02508 type_III_yscG type I 61.3 43 0.00093 21.9 8.7 52 229-286 47-98 (115)
425 KOG3677 RNA polymerase I-assoc 61.3 1E+02 0.0022 26.2 9.2 59 118-177 238-299 (525)
426 smart00386 HAT HAT (Half-A-TPR 61.1 16 0.00036 17.0 3.5 27 25-52 2-28 (33)
427 PF09454 Vps23_core: Vps23 cor 60.5 31 0.00068 20.3 4.3 30 46-75 9-38 (65)
428 PRK13342 recombination factor 59.6 1.1E+02 0.0024 26.1 17.8 22 164-185 244-265 (413)
429 KOG0403 Neoplastic transformat 59.5 1.2E+02 0.0025 26.2 17.9 76 187-268 511-586 (645)
430 KOG0292 Vesicle coat complex C 59.3 1.6E+02 0.0035 27.9 10.5 177 93-320 606-782 (1202)
431 KOG2063 Vacuolar assembly/sort 59.3 1.7E+02 0.0036 28.0 18.1 112 158-269 599-745 (877)
432 COG0790 FOG: TPR repeat, SEL1 59.1 91 0.002 24.9 21.9 84 57-146 53-144 (292)
433 PF11663 Toxin_YhaV: Toxin wit 58.7 14 0.00029 25.5 2.9 29 235-265 109-137 (140)
434 PF14561 TPR_20: Tetratricopep 58.4 45 0.00098 21.1 8.9 33 112-144 19-51 (90)
435 KOG0403 Neoplastic transformat 57.7 1.2E+02 0.0027 26.0 17.4 61 259-322 512-574 (645)
436 KOG0991 Replication factor C, 57.0 91 0.002 24.2 15.8 103 160-266 169-282 (333)
437 PRK11639 zinc uptake transcrip 56.3 76 0.0016 23.1 6.7 64 174-239 15-78 (169)
438 cd07153 Fur_like Ferric uptake 56.2 36 0.00079 22.6 4.8 46 227-272 6-51 (116)
439 PRK09857 putative transposase; 56.2 1.1E+02 0.0023 24.8 9.8 27 296-322 245-271 (292)
440 PF04910 Tcf25: Transcriptiona 55.4 1.2E+02 0.0027 25.3 20.2 56 157-212 110-166 (360)
441 PF10255 Paf67: RNA polymerase 55.3 1.3E+02 0.0029 25.6 12.0 60 118-177 125-191 (404)
442 KOG4567 GTPase-activating prot 55.2 1.1E+02 0.0025 24.8 8.5 71 241-316 263-343 (370)
443 PF09868 DUF2095: Uncharacteri 54.3 60 0.0013 21.6 5.1 36 52-88 68-103 (128)
444 PF09986 DUF2225: Uncharacteri 54.3 96 0.0021 23.7 11.5 49 97-145 142-195 (214)
445 PRK14956 DNA polymerase III su 53.9 1.5E+02 0.0033 26.0 10.8 43 168-212 184-227 (484)
446 PF01475 FUR: Ferric uptake re 53.8 33 0.00072 23.0 4.4 44 227-270 13-56 (120)
447 PF10366 Vps39_1: Vacuolar sor 53.7 63 0.0014 21.4 7.3 27 117-143 41-67 (108)
448 PF04097 Nic96: Nup93/Nic96; 53.6 1.8E+02 0.0039 26.6 17.0 87 192-284 265-355 (613)
449 PF04910 Tcf25: Transcriptiona 53.6 1.3E+02 0.0029 25.1 19.2 55 229-283 111-166 (360)
450 COG5159 RPN6 26S proteasome re 53.4 1.2E+02 0.0025 24.4 13.6 200 85-284 8-234 (421)
451 KOG2908 26S proteasome regulat 53.3 1.3E+02 0.0028 24.8 9.9 60 190-249 80-143 (380)
452 KOG3364 Membrane protein invol 52.5 78 0.0017 22.1 9.2 68 218-285 29-100 (149)
453 KOG2659 LisH motif-containing 52.5 1.1E+02 0.0023 23.6 10.5 64 7-72 23-91 (228)
454 PF01475 FUR: Ferric uptake re 52.3 57 0.0012 21.9 5.3 48 154-201 11-58 (120)
455 KOG2471 TPR repeat-containing 52.2 1.6E+02 0.0036 25.7 15.2 259 18-281 248-680 (696)
456 PRK09462 fur ferric uptake reg 51.9 82 0.0018 22.2 7.5 58 215-273 11-69 (148)
457 cd07153 Fur_like Ferric uptake 51.9 62 0.0013 21.5 5.4 47 156-202 6-52 (116)
458 PF08311 Mad3_BUB1_I: Mad3/BUB 51.7 75 0.0016 21.7 8.7 42 239-280 81-123 (126)
459 COG4976 Predicted methyltransf 51.5 39 0.00084 26.0 4.5 55 231-286 5-59 (287)
460 PHA02875 ankyrin repeat protei 51.3 1.5E+02 0.0033 25.2 14.6 62 4-69 24-89 (413)
461 PF10963 DUF2765: Protein of u 50.7 60 0.0013 20.3 4.9 34 5-38 11-44 (83)
462 PF14853 Fis1_TPR_C: Fis1 C-te 49.7 46 0.00099 18.6 5.6 24 262-285 7-30 (53)
463 KOG1839 Uncharacterized protei 49.7 2.8E+02 0.0061 27.7 11.0 26 43-68 971-996 (1236)
464 PF03745 DUF309: Domain of unk 49.5 51 0.0011 19.1 5.2 12 94-105 13-24 (62)
465 PRK13184 pknD serine/threonine 49.0 2.6E+02 0.0056 27.1 15.5 205 66-281 677-896 (932)
466 PRK06645 DNA polymerase III su 48.9 1.9E+02 0.0042 25.6 10.4 84 168-254 191-290 (507)
467 KOG2034 Vacuolar sorting prote 48.7 2.4E+02 0.0053 26.7 24.8 51 16-72 364-416 (911)
468 KOG0687 26S proteasome regulat 48.6 1.5E+02 0.0033 24.3 13.4 150 25-178 37-209 (393)
469 PF08870 DUF1832: Domain of un 48.4 70 0.0015 21.4 5.0 22 202-223 6-28 (113)
470 PF07064 RIC1: RIC1; InterPro 48.3 1.4E+02 0.003 23.7 15.9 24 84-107 86-109 (258)
471 KOG3677 RNA polymerase I-assoc 48.0 1.3E+02 0.0028 25.6 7.3 60 46-106 236-298 (525)
472 PF10475 DUF2450: Protein of u 47.7 1.5E+02 0.0032 23.9 9.6 114 156-281 104-222 (291)
473 PRK07003 DNA polymerase III su 47.4 2.5E+02 0.0055 26.5 12.3 84 167-253 181-277 (830)
474 PF08311 Mad3_BUB1_I: Mad3/BUB 47.3 90 0.002 21.3 9.3 45 273-317 80-125 (126)
475 COG4259 Uncharacterized protei 47.2 78 0.0017 20.6 6.6 25 119-143 76-100 (121)
476 KOG0292 Vesicle coat complex C 46.5 2.7E+02 0.0059 26.6 9.7 129 55-213 653-781 (1202)
477 TIGR02710 CRISPR-associated pr 45.9 1.8E+02 0.004 24.5 10.3 52 19-70 139-196 (380)
478 PRK09857 putative transposase; 45.7 1.6E+02 0.0035 23.8 9.0 65 119-184 210-274 (292)
479 PF02184 HAT: HAT (Half-A-TPR) 44.7 40 0.00087 16.5 2.8 23 272-296 3-25 (32)
480 KOG1839 Uncharacterized protei 44.7 3.4E+02 0.0073 27.2 11.6 156 125-280 942-1123(1236)
481 smart00777 Mad3_BUB1_I Mad3/BU 44.4 1E+02 0.0022 21.1 7.5 42 274-315 81-123 (125)
482 KOG3364 Membrane protein invol 43.8 1.1E+02 0.0024 21.4 9.5 66 148-213 30-99 (149)
483 PF13762 MNE1: Mitochondrial s 43.5 1.2E+02 0.0025 21.5 13.1 79 83-161 42-126 (145)
484 PRK09462 fur ferric uptake reg 43.4 1.2E+02 0.0025 21.5 7.6 60 141-201 8-68 (148)
485 PF04762 IKI3: IKI3 family; I 43.4 3.2E+02 0.007 26.6 17.5 29 151-179 813-843 (928)
486 PRK08691 DNA polymerase III su 43.2 2.8E+02 0.0061 25.9 12.1 85 167-254 181-278 (709)
487 PF10255 Paf67: RNA polymerase 43.0 2.1E+02 0.0046 24.4 11.0 100 184-283 74-191 (404)
488 KOG1114 Tripeptidyl peptidase 42.3 3.3E+02 0.0071 26.4 14.2 63 220-283 1230-1293(1304)
489 PRK14960 DNA polymerase III su 42.2 2.9E+02 0.0062 25.7 11.6 84 167-253 180-276 (702)
490 PF00244 14-3-3: 14-3-3 protei 42.0 1.6E+02 0.0036 22.8 12.2 39 52-90 8-46 (236)
491 KOG2396 HAT (Half-A-TPR) repea 42.0 2.4E+02 0.0053 24.8 25.6 68 6-74 101-169 (568)
492 PF02847 MA3: MA3 domain; Int 41.7 1E+02 0.0022 20.3 7.5 60 14-75 6-67 (113)
493 PF06957 COPI_C: Coatomer (COP 41.4 1.2E+02 0.0026 26.0 6.4 112 195-324 214-333 (422)
494 PRK12798 chemotaxis protein; R 41.2 2.3E+02 0.005 24.3 20.4 80 93-174 125-209 (421)
495 PRK14951 DNA polymerase III su 41.1 2.9E+02 0.0062 25.4 12.4 84 168-254 187-283 (618)
496 COG2137 OraA Uncharacterized p 40.8 1.4E+02 0.0031 21.8 13.0 109 134-246 54-163 (174)
497 COG2178 Predicted RNA-binding 40.4 1.6E+02 0.0034 22.1 8.2 24 50-73 34-57 (204)
498 PRK14962 DNA polymerase III su 39.9 2.6E+02 0.0057 24.6 13.7 87 167-256 179-278 (472)
499 COG2812 DnaX DNA polymerase II 39.3 2.8E+02 0.0061 24.7 9.6 22 269-290 258-279 (515)
500 smart00638 LPD_N Lipoprotein N 38.9 3E+02 0.0064 24.9 24.5 198 44-249 309-524 (574)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.9e-58 Score=408.19 Aligned_cols=325 Identities=19% Similarity=0.330 Sum_probs=311.5
Q ss_pred CCCCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCCh
Q 037620 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDV 80 (330)
Q Consensus 1 m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (330)
|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||.
T Consensus 463 M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~ 542 (1060)
T PLN03218 463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHh--cCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 037620 81 VSYGIMINAHCSAKRYDEAVELFREMEA--TNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVG 158 (330)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (330)
.+|+.++.+|++.|++++|.++|++|.. .++.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.
T Consensus 543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ 622 (1060)
T PLN03218 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 9999999999999999999999999976 57899999999999999999999999999999999999999999999999
Q ss_pred HHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHH
Q 037620 159 AYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVD 238 (330)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (330)
+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+ .+..|+..+|+.++.+|++.|+++
T Consensus 623 ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k-~G~~pd~~tynsLI~ay~k~G~~e 701 (1060)
T PLN03218 623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK-QGIKLGTVSYSSLMGACSNAKNWK 701 (1060)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999999999999999999999998 799999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 037620 239 MAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKID 318 (330)
Q Consensus 239 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (330)
+|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|..++.+|.+.|++++|.+++++|.
T Consensus 702 eA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~ 781 (1060)
T PLN03218 702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCC
Q 037620 319 KLRKTPLV 326 (330)
Q Consensus 319 ~~~~~~~~ 326 (330)
+.|..|+.
T Consensus 782 k~Gi~pd~ 789 (1060)
T PLN03218 782 EDGIKPNL 789 (1060)
T ss_pred HcCCCCCH
Confidence 99998864
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.7e-56 Score=395.75 Aligned_cols=318 Identities=21% Similarity=0.353 Sum_probs=312.1
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHH
Q 037620 8 QELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMI 87 (330)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (330)
||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHh--cCCCCChhhHHHHHHHHHhhCC
Q 037620 88 NAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKK--RGFEPEAPTYNAVVGAYCWSMR 165 (330)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~ 165 (330)
.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.. .|+.||..+|+.++.+|++.|+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999976 6789999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Q 037620 166 INDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWD 245 (330)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 245 (330)
+++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|..+|++|.+ .|+.||..+|+.++.+|++.|++++|.++++
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~-~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK-KGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 7999999999999999999999999999999
Q ss_pred HHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCCCC
Q 037620 246 EMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTPL 325 (330)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 325 (330)
+|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|...|..|+
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred C
Q 037620 326 V 326 (330)
Q Consensus 326 ~ 326 (330)
.
T Consensus 754 ~ 754 (1060)
T PLN03218 754 T 754 (1060)
T ss_pred H
Confidence 4
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3e-51 Score=360.13 Aligned_cols=303 Identities=18% Similarity=0.311 Sum_probs=181.4
Q ss_pred CCCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChH
Q 037620 2 DKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVV 81 (330)
Q Consensus 2 ~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 81 (330)
.+.|+.||..+||.++..|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..
T Consensus 150 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~ 225 (697)
T PLN03081 150 ESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR 225 (697)
T ss_pred HHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChh
Confidence 4567788888888888888888888888888888764 677888888888888888888888888887776666655
Q ss_pred HHHHH-----------------------------------HHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHh
Q 037620 82 SYGIM-----------------------------------INAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLG 126 (330)
Q Consensus 82 ~~~~l-----------------------------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (330)
+|+.+ +.+|++.|++++|.++|++|. ++|..+|+.++.+|+
T Consensus 226 t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~ 301 (697)
T PLN03081 226 TFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYA 301 (697)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHH
Confidence 55444 444444455555555554442 234455555555555
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 037620 127 SEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYS 206 (330)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 206 (330)
+.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|..
T Consensus 302 ~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~ 381 (697)
T PLN03081 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHh-c
Q 037620 207 VFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLD-I 285 (330)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~ 285 (330)
+|++|.+ ||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+ .
T Consensus 382 vf~~m~~-----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~ 456 (697)
T PLN03081 382 VFDRMPR-----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH 456 (697)
T ss_pred HHHhCCC-----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Confidence 5555432 345555555555555555555555555555555555555555555555555555555555555543 3
Q ss_pred CCCCChhhHHHHHHHHHhcCchHHHHHHHHHH
Q 037620 286 GIRPPGQLFSNLKQALRDEGMEETAVVLAQKI 317 (330)
Q Consensus 286 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 317 (330)
|+.|+..+|+.++.+|.+.|++++|.++++++
T Consensus 457 g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 457 RIKPRAMHYACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred CCCCCccchHhHHHHHHhcCCHHHHHHHHHHC
Confidence 55555555555555555555555555555443
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.2e-50 Score=353.65 Aligned_cols=310 Identities=19% Similarity=0.259 Sum_probs=288.7
Q ss_pred CCCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChH
Q 037620 2 DKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVV 81 (330)
Q Consensus 2 ~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 81 (330)
.+.|+.||..+||+||..|++.|++++|.++|+.|.. +|..+|+.++.+|++.|++++|.++|++|.+.|+.||..
T Consensus 251 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~ 326 (697)
T PLN03081 251 LKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326 (697)
T ss_pred HHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 3568889999999999999999999999999999965 588999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 037620 82 SYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYC 161 (330)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (330)
||+.++.+|++.|++++|.+++..|.+.|++|+..+|+.|+.+|++.|++++|.++|++|. .||..+|+.+|.+|+
T Consensus 327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYG 402 (697)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999986 468899999999999
Q ss_pred hhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHH
Q 037620 162 WSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAM 241 (330)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 241 (330)
+.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.++.+..|+..+|+.++.+|++.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999876799999999999999999999999999
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCchHHHHHHHHHHHhc
Q 037620 242 RIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP-PGQLFSNLKQALRDEGMEETAVVLAQKIDKL 320 (330)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (330)
++++++ +..|+..+|+.++.+|...|+++.|..+++++.+. .| +..+|..++..|.+.|++++|.+++++|.+.
T Consensus 483 ~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 483 AMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 998765 57899999999999999999999999999999754 44 4779999999999999999999999999999
Q ss_pred CCCC
Q 037620 321 RKTP 324 (330)
Q Consensus 321 ~~~~ 324 (330)
|...
T Consensus 558 g~~k 561 (697)
T PLN03081 558 GLSM 561 (697)
T ss_pred CCcc
Confidence 8753
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-49 Score=357.84 Aligned_cols=313 Identities=18% Similarity=0.254 Sum_probs=181.7
Q ss_pred CCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHH
Q 037620 4 FGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSY 83 (330)
Q Consensus 4 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (330)
.|+.||+.+||+||..|++.|++++|.++|+.|.. ||..+||++|.+|.+.|++++|+++|.+|.+.|+.||..||
T Consensus 216 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty 291 (857)
T PLN03077 216 FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTI 291 (857)
T ss_pred cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHH
Confidence 34555555555555555555555555555555543 34455555555555555555555555555555555555555
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCCCCC-------------------------------hHHHHHHHHHHhccCcHH
Q 037620 84 GIMINAHCSAKRYDEAVELFREMEATNCKPS-------------------------------PHIFCTLINGLGSEKRLS 132 (330)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------------------------~~~~~~l~~~~~~~~~~~ 132 (330)
+.++.+|++.|+.+.+.+++..+.+.|+.|| ..+|+.++.+|.+.|+++
T Consensus 292 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~ 371 (857)
T PLN03077 292 TSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPD 371 (857)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHH
Confidence 5444444444444444444444444444444 445555555555555555
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 037620 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMS 212 (330)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (330)
+|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.++.+|++.|++++|.++|++|.
T Consensus 372 ~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 451 (857)
T PLN03077 372 KALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP 451 (857)
T ss_pred HHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 56666666666666666666666666666666666666666666666666666667777777777777777777777765
Q ss_pred cCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC----------------------------------------
Q 037620 213 RKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV---------------------------------------- 252 (330)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------------------------------------- 252 (330)
+ +|..+|+.++.+|++.|+.++|..+|++|.. ++
T Consensus 452 ~-----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~ 525 (857)
T PLN03077 452 E-----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525 (857)
T ss_pred C-----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccce
Confidence 4 2333333333333333333333333333332 12
Q ss_pred -------------------------CccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCch
Q 037620 253 -------------------------LPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGME 307 (330)
Q Consensus 253 -------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 307 (330)
.||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||..++.+|.+.|++
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v 605 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChH
Confidence 2344456666666667777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHH-hcCCCCCC
Q 037620 308 ETAVVLAQKID-KLRKTPLV 326 (330)
Q Consensus 308 ~~a~~~~~~~~-~~~~~~~~ 326 (330)
++|.++|+.|. +.+..|..
T Consensus 606 ~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 606 TQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHHHHHHHHHHHhCCCCch
Confidence 77777777776 56666653
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4e-48 Score=347.95 Aligned_cols=305 Identities=18% Similarity=0.197 Sum_probs=238.6
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHH
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIM 86 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (330)
+||..+||.+|.+|++.|++++|+++|++|...|+.||..+|+.++.+|...+++..+.+++..+.+.|+.||..+++.+
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L 228 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence 46777788888888888888888888888877777777777777777777777777777777777777777777777777
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCh
Q 037620 87 INAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRI 166 (330)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (330)
+.+|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|.+|.+.|+.||..+|+.++.+|++.|+.
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~ 304 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Confidence 777777788888888777774 3566778888888888888888888888888778888888888888888888888
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Q 037620 167 NDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDE 246 (330)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 246 (330)
+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.. ||..+|+.++.+|++.|++++|.++|++
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~d~~s~n~li~~~~~~g~~~~A~~lf~~ 379 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-----KDAVSWTAMISGYEKNGLPDKALETYAL 379 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence 88888888888878888888888888888888888888888887753 5677788888888888888888888888
Q ss_pred HHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhc
Q 037620 247 MKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKL 320 (330)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (330)
|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.++.+|.+.|++++|.++|++|.+.
T Consensus 380 M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 453 (857)
T PLN03077 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK 453 (857)
T ss_pred HHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Confidence 87777778888888888888888888888888877777777777777777777777777777777777777553
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=4.6e-24 Score=177.10 Aligned_cols=301 Identities=12% Similarity=0.073 Sum_probs=248.9
Q ss_pred HHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCC---hHHHHHHHHHHhcc
Q 037620 17 IDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPD---VVSYGIMINAHCSA 93 (330)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~ 93 (330)
...+...|++++|...|+.+.+.+ +.+..++..+...+...|++++|..+++.+......++ ...+..+...|...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 445677899999999999999863 45677899999999999999999999999987632222 25678889999999
Q ss_pred CcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhhCChhHH
Q 037620 94 KRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEA----PTYNAVVGAYCWSMRINDA 169 (330)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a 169 (330)
|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999998865 667889999999999999999999999999887533221 2355677788899999999
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 037620 170 YRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKA 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 249 (330)
...++++.+.. +.+...+..+...+.+.|++++|...++++... .......++..++.+|...|++++|...++++.+
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999998864 335667888889999999999999999999862 2122245678899999999999999999999988
Q ss_pred CCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---cCchHHHHHHHHHHHhcCCCCC
Q 037620 250 RGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRD---EGMEETAVVLAQKIDKLRKTPL 325 (330)
Q Consensus 250 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~ 325 (330)
.. |+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++.+.++.|.
T Consensus 278 ~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 278 EY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred hC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 64 55566788999999999999999999999875 5888888888777664 5689999999999998666554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=3e-23 Score=190.38 Aligned_cols=301 Identities=13% Similarity=0.110 Sum_probs=153.4
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMIN 88 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (330)
+...+..++..+.+.|++++|..+++.+.+. .+.+...|..+..++...|++++|...|+++.+.. +.+...+..+..
T Consensus 566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 643 (899)
T TIGR02917 566 EIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLAD 643 (899)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3444555555666666666666666665542 23445555566666666666666666666655542 224445555555
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhH
Q 037620 89 AHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIND 168 (330)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (330)
++...|++++|..+|+++.+.. +.+..++..++..+...|++++|.++++.+.+.. +.+...+..+...+...|++++
T Consensus 644 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 644 AYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHH
Confidence 5555556666666555555443 3444555555555555555555555555554443 2344444444555555555555
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 037620 169 AYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMK 248 (330)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 248 (330)
|...++.+...+ |+..++..+..++...|++++|...++.+.+ ..+.+...+..+...|...|++++|..+|+++.
T Consensus 722 A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 797 (899)
T TIGR02917 722 AIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVV 797 (899)
T ss_pred HHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 555555544432 2223444444444444555555444444443 122233444444444444444444444444444
Q ss_pred hCCCC--------------------------------ccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHH
Q 037620 249 ARGVL--------------------------------PVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSN 296 (330)
Q Consensus 249 ~~~~~--------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 296 (330)
+..+. -++..+..+...+...|++++|...++++++.+. .+..++..
T Consensus 798 ~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~ 876 (899)
T TIGR02917 798 KKAPDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYH 876 (899)
T ss_pred HhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHH
Confidence 43321 1333444455555555555555555555555442 25555555
Q ss_pred HHHHHHhcCchHHHHHHHHHHH
Q 037620 297 LKQALRDEGMEETAVVLAQKID 318 (330)
Q Consensus 297 l~~~~~~~g~~~~a~~~~~~~~ 318 (330)
++.++.+.|++++|.+++++|.
T Consensus 877 l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 877 LALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHh
Confidence 5555555555555555555543
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=1.1e-22 Score=186.76 Aligned_cols=303 Identities=13% Similarity=0.113 Sum_probs=258.4
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHH
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIM 86 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (330)
+.+..++..+...+.+.|++++|..+++.+.+.+ +.+...+..++..+...|++++|..+++.+.+.. +.+...|..+
T Consensus 530 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 607 (899)
T TIGR02917 530 PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLML 607 (899)
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 4567889999999999999999999999998753 5577888899999999999999999999998764 5578899999
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCh
Q 037620 87 INAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRI 166 (330)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (330)
..++...|++++|...|+++.+.. +.+...+..+..++.+.|++++|..+++++.+.. +.+..++..+...+...|++
T Consensus 608 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 685 (899)
T TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRT 685 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCH
Confidence 999999999999999999998876 6678889999999999999999999999998874 55678899999999999999
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Q 037620 167 NDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDE 246 (330)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 246 (330)
++|..+++.+.... +.+...+..+...+...|++++|...++.+.. ..|+..++..+..++...|++++|.+.++.
T Consensus 686 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 761 (899)
T TIGR02917 686 ESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALLASGNTAEAVKTLEA 761 (899)
T ss_pred HHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998875 45777888899999999999999999999886 234556778899999999999999999999
Q ss_pred HHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhc
Q 037620 247 MKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKL 320 (330)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (330)
+.+.... +...+..+...|...|++++|...|+++.+.. +++...+..+...+...|+ ++|..+++++.+.
T Consensus 762 ~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 762 WLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 9887544 78889999999999999999999999998765 3455566666555555555 4455555555443
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=1e-22 Score=169.05 Aligned_cols=278 Identities=10% Similarity=0.124 Sum_probs=231.4
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC---hHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHH
Q 037620 8 QELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPD---IKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYG 84 (330)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (330)
.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|...|++++|..+|+++.+.. +++..++.
T Consensus 67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~ 145 (389)
T PRK11788 67 ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQ 145 (389)
T ss_pred ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHH
Confidence 3556789999999999999999999999987532221 2567888999999999999999999999863 45778899
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCCCCC----hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 037620 85 IMINAHCSAKRYDEAVELFREMEATNCKPS----PHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAY 160 (330)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (330)
.++..+...|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...++++.+.. +.+...+..+...+
T Consensus 146 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 224 (389)
T PRK11788 146 QLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLA 224 (389)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHH
Confidence 999999999999999999999987652222 2245667788899999999999999998864 34566788888999
Q ss_pred HhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHH
Q 037620 161 CWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240 (330)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 240 (330)
.+.|++++|...++++...+......++..++.+|...|++++|...++++.+ ..|+...+..++..+.+.|++++|
T Consensus 225 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A 301 (389)
T PRK11788 225 LAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAA 301 (389)
T ss_pred HHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHH
Confidence 99999999999999998864333356788899999999999999999999876 245666678899999999999999
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHhc---cCChhHHHHHHHHHHhcCCCCChh
Q 037620 241 MRIWDEMKARGVLPVMHMYSTLINSLCH---EDKLDDACKYFQEMLDIGIRPPGQ 292 (330)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~ 292 (330)
..+++++.+. .|+...++.++..+.. .|+.++++.+++++.+.++.|++.
T Consensus 302 ~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 302 QALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 9999998876 5788888888877664 568999999999999877777665
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=2.5e-20 Score=162.39 Aligned_cols=305 Identities=11% Similarity=0.034 Sum_probs=236.8
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMIN 88 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (330)
+...+..++.+....|++++|...++.+.+.. |.+...+..+...+...|++++|...++++.... +.+...+..+..
T Consensus 75 ~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~ 152 (656)
T PRK15174 75 GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLR 152 (656)
T ss_pred chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 44556666677778899999999999988853 4566778888888899999999999999988763 335677888888
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhH
Q 037620 89 AHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIND 168 (330)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (330)
++...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.+.+....++......+...+...|++++
T Consensus 153 ~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~e 230 (656)
T PRK15174 153 TLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQE 230 (656)
T ss_pred HHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHH
Confidence 8999999999999998887665 3444444444 3477889999999999888776433344455556677888999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHH----HHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHH
Q 037620 169 AYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEE----AYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244 (330)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 244 (330)
|...++...... +.+...+..+...+...|++++ |...+++... ..+.+...+..+...+...|++++|...+
T Consensus 231 A~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l 307 (656)
T PRK15174 231 AIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLL 307 (656)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999988764 3356777888889999999885 7888988876 23345677888899999999999999999
Q ss_pred HHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCchHHHHHHHHHHHhcCCC
Q 037620 245 DEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPG-QLFSNLKQALRDEGMEETAVVLAQKIDKLRKT 323 (330)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (330)
++..+..+. +...+..+..++.+.|++++|+..++++.+.. |+. ..+..+..++...|+.++|...+++..+..+.
T Consensus 308 ~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 308 QQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 998887544 56677778889999999999999999988653 443 33444567788999999999999988776543
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=5.3e-20 Score=160.37 Aligned_cols=302 Identities=8% Similarity=0.013 Sum_probs=250.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhc
Q 037620 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCS 92 (330)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (330)
...++..+.+.|++++|+.+++...... +-+...+..++.+....|++++|...++++.... +.+...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 4456677889999999999999998853 4456667777777888999999999999999874 4467788889999999
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHH
Q 037620 93 AKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRM 172 (330)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (330)
.|++++|...++++.... +.+...+..+...+...|++++|...+..+.... +.+...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 999999999999999875 6778889999999999999999999999887764 2233344333 347889999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHH----HHHHHHHHH
Q 037620 173 MDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDM----AMRIWDEMK 248 (330)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~ 248 (330)
++.+.+....++......+..++...|++++|...+++.... .+.+...+..+...+...|++++ |...+++..
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 999887643344555566678889999999999999999873 34456778889999999999986 899999998
Q ss_pred hCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCC
Q 037620 249 ARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKT 323 (330)
Q Consensus 249 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (330)
+..+. +...+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|...++++....+.
T Consensus 278 ~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 278 QFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred hhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 87654 67889999999999999999999999999764 345667778899999999999999999999876553
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=1.4e-18 Score=151.87 Aligned_cols=310 Identities=10% Similarity=0.015 Sum_probs=198.5
Q ss_pred CCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHH----------------
Q 037620 6 LKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYR---------------- 69 (330)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---------------- 69 (330)
+.|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..++...|++++|+..|.
T Consensus 156 ~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~ 234 (615)
T TIGR00990 156 CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQA 234 (615)
T ss_pred cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 45666777777777888888888888887777643 3345566666667777777666654332
Q ss_pred --------------------------------------------------------------------------------
Q 037620 70 -------------------------------------------------------------------------------- 69 (330)
Q Consensus 70 -------------------------------------------------------------------------------- 69 (330)
T Consensus 235 ~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~ 314 (615)
T TIGR00990 235 VERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAA 314 (615)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHH
Confidence
Q ss_pred ----HHHhCC-CCC-ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 037620 70 ----EMKDDG-FEP-DVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKK 143 (330)
Q Consensus 70 ----~~~~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (330)
...+.+ ..| ....+..+...+...|++++|+..|++..+.. |.....|..+..++...|++++|...++++.+
T Consensus 315 ~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 393 (615)
T TIGR00990 315 RAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALK 393 (615)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 222211 011 22334444555556677777777777766654 44455666667777777777777777777766
Q ss_pred cCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHH
Q 037620 144 RGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVST 223 (330)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 223 (330)
.. +.+...+..+...+...|++++|...|++..... +.+...+..+..++.+.|++++|+..+++..+ ..+.+...
T Consensus 394 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~ 469 (615)
T TIGR00990 394 LN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDV 469 (615)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHH
Confidence 53 3455667777777777777777777777777653 22455666677777777777777777777765 23334556
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccH------HHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 037620 224 YEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVM------HMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNL 297 (330)
Q Consensus 224 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 297 (330)
++.+...+...|++++|...|++..+.....+. ..++..+..+...|++++|..++++.+... +.+...+..+
T Consensus 470 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~l 548 (615)
T TIGR00990 470 YNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATM 548 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 777777777788888888888777665322111 111222223334578888888888777654 2334467778
Q ss_pred HHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 298 KQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 298 ~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
...+.+.|++++|.+.+++..+...
T Consensus 549 a~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 549 AQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHhc
Confidence 8888888888888888887766543
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=9.9e-18 Score=146.52 Aligned_cols=302 Identities=12% Similarity=0.038 Sum_probs=240.2
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhc
Q 037620 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCS 92 (330)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (330)
+......+.+.|++++|+..|+...+. .|+...|..+..+|.+.|++++|++.++..++.. +.+...|..+..++..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 556677888999999999999998874 5788889999999999999999999999999874 3367788889999999
Q ss_pred cCcHHHHHHHHHHHHhcC-----------------------------CCCChHHHHHHHH--------------------
Q 037620 93 AKRYDEAVELFREMEATN-----------------------------CKPSPHIFCTLIN-------------------- 123 (330)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~-------------------- 123 (330)
.|++++|+..|..+...+ .+++...+..+..
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 999999987665443211 0111000000000
Q ss_pred ----------HH------hccCcHHHHHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcH
Q 037620 124 ----------GL------GSEKRLSEALQFFGQSKKRG--FEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNT 185 (330)
Q Consensus 124 ----------~~------~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 185 (330)
.+ ...+++++|.+.|+...+.+ .+.....+..+...+...|++++|...+++...... ...
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcH
Confidence 00 12257889999999988764 123455788888889999999999999999988632 246
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 037620 186 RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINS 265 (330)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (330)
..|..+...+...|++++|...++...+. .+.+..+|..+...+...|++++|...|++..+.... +...+..+..+
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~ 442 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHH
Confidence 68888899999999999999999998773 3345678889999999999999999999999987654 66778888899
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 266 LCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 266 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
+.+.|++++|+..+++.++.. +.+...+..+...+...|++++|.+.+++......
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 999999999999999998753 44578888999999999999999999999887654
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.85 E-value=4.7e-17 Score=151.29 Aligned_cols=307 Identities=10% Similarity=0.028 Sum_probs=172.4
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCC-ChHHHH------------HHHHHHhhccChHHHHHHHHHHHhCC
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDP-DIKSYT------------ILLEGWGQQKNLLSMNEVYREMKDDG 75 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~ 75 (330)
+...+..+...+.+.|++++|+..|++..+..... ....|. .....+.+.|++++|+..|+++.+..
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~ 381 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD 381 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 45556666666666666666666666665532111 111111 11234455666666666666666653
Q ss_pred CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHH---------------------------------
Q 037620 76 FEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLI--------------------------------- 122 (330)
Q Consensus 76 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--------------------------------- 122 (330)
+.+...+..+..++...|++++|++.|+++.+.. +.+...+..+.
T Consensus 382 -P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l 459 (1157)
T PRK11447 382 -NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSL 459 (1157)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 2244555556666666777777777776666543 33333332222
Q ss_pred ---------HHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 037620 123 ---------NGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLH 193 (330)
Q Consensus 123 ---------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 193 (330)
..+...|++++|.+.+++..+.. +.+...+..+...|.+.|++++|...++++.+... .+...+..+..
T Consensus 460 ~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al 537 (1157)
T PRK11447 460 QNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGL 537 (1157)
T ss_pred hhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 22334566666666666666553 22444555666666666666666666666655321 12222222222
Q ss_pred HHHHcCCHHHHHHHHHHhhcCC--------------------------------------CCCCchHHHHHHHHHHHhCC
Q 037620 194 HLIKAGRTEEAYSVFKRMSRKP--------------------------------------GTEPTVSTYEIVVRMFCYNA 235 (330)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~--------------------------------------~~~~~~~~~~~l~~~~~~~~ 235 (330)
.+...++.++|...++.+.... ..+.+...+..+...+...|
T Consensus 538 ~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g 617 (1157)
T PRK11447 538 YLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRG 617 (1157)
T ss_pred HHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcC
Confidence 2222333333333322221000 01223334556667777778
Q ss_pred CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHH
Q 037620 236 QVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQ 315 (330)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 315 (330)
++++|+..|++..+..+. +...+..++..+...|++++|+..++.+.+.. +.+..++..+..++...|++++|.++++
T Consensus 618 ~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 618 DYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 888888888887776544 56777778888888888888888888776542 2344556667777778888888888888
Q ss_pred HHHhcC
Q 037620 316 KIDKLR 321 (330)
Q Consensus 316 ~~~~~~ 321 (330)
++....
T Consensus 696 ~al~~~ 701 (1157)
T PRK11447 696 RLIPQA 701 (1157)
T ss_pred HHhhhC
Confidence 877654
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=3.4e-18 Score=138.88 Aligned_cols=305 Identities=15% Similarity=0.135 Sum_probs=178.1
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHH-H
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYG-I 85 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ 85 (330)
+.-..+|..+...+-..|++++|+.+++.+.+.. +-.+..|..+..++...|+.+.|.+.|...++. .|+..... .
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~ 189 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSD 189 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcc
Confidence 3346778999999999999999999999999853 336788999999999999999999998888765 34433322 2
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCC-------------------
Q 037620 86 MINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGF------------------- 146 (330)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------- 146 (330)
+...+...|+.++|...|.+.++.. +--..+|+.|...+...|+...|++.|++..+.+.
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcc
Confidence 2233333455555555555544433 23334444455555555555555555555444420
Q ss_pred --------------CCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 037620 147 --------------EPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMS 212 (330)
Q Consensus 147 --------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (330)
+.....+..+...|...|..+.|+..+++..+... --+..|+.|..++-..|+..+|.+.+.+..
T Consensus 269 d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 269 DRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred hHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 22233344444444455555555555555544321 123456666666666666666666666655
Q ss_pred cCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC-h
Q 037620 213 RKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPP-G 291 (330)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~ 291 (330)
.-. +......+.|...|...|.++.|..+|....+-... -...++.|...|-+.|++++|+..+++.+. +.|+ .
T Consensus 348 ~l~--p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fA 422 (966)
T KOG4626|consen 348 RLC--PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFA 422 (966)
T ss_pred HhC--CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHH
Confidence 411 112334455666666666666666666655543222 233456666666666666666666666653 3444 3
Q ss_pred hhHHHHHHHHHhcCchHHHHHHHHHHHhcC
Q 037620 292 QLFSNLKQALRDEGMEETAVVLAQKIDKLR 321 (330)
Q Consensus 292 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (330)
..|..+...|...|+...|.+.+.+....+
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~n 452 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQIN 452 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcC
Confidence 456666666666666666666666554443
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.83 E-value=1.3e-16 Score=148.48 Aligned_cols=295 Identities=12% Similarity=0.078 Sum_probs=197.6
Q ss_pred HHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHH--------------
Q 037620 18 DTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSY-------------- 83 (330)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------- 83 (330)
..+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|+++.+... .+...+
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCHHH
Confidence 34555566666666666655532 33444555555556666666666666666554421 112111
Q ss_pred ----------------------------HHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHH
Q 037620 84 ----------------------------GIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEAL 135 (330)
Q Consensus 84 ----------------------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 135 (330)
..+...+...|++++|++.|++..+.. |.+...+..+...|.+.|++++|.
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 122334455677888888888777765 556667777777788888888888
Q ss_pred HHHHHHHhcCCCCChhhHHHHHH--------------------------------------------HHHhhCChhHHHH
Q 037620 136 QFFGQSKKRGFEPEAPTYNAVVG--------------------------------------------AYCWSMRINDAYR 171 (330)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~--------------------------------------------~~~~~~~~~~a~~ 171 (330)
..++++.+.. +.+...+..+.. .+...|+.++|..
T Consensus 516 ~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 516 ALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 8887776642 223333322222 3344455555555
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 037620 172 MMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG 251 (330)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 251 (330)
+++. .+.+...+..+...+.+.|++++|+..|+++.+. .+.+...+..++..+...|++++|++.++.+.+..
T Consensus 595 ~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 595 LLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 4441 2345567778888999999999999999999873 34467788899999999999999999999887764
Q ss_pred CCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC--C---ChhhHHHHHHHHHhcCchHHHHHHHHHHHh-cCCCC
Q 037620 252 VLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIR--P---PGQLFSNLKQALRDEGMEETAVVLAQKIDK-LRKTP 324 (330)
Q Consensus 252 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~ 324 (330)
.. +...+..+..++...|++++|..++++++..... | +...+..+...+...|++++|...+++... .+..|
T Consensus 668 p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 668 ND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred CC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 33 5566777888899999999999999999864321 1 224566678889999999999999998863 33443
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=4.2e-16 Score=138.92 Aligned_cols=309 Identities=12% Similarity=0.046 Sum_probs=199.1
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHH
Q 037620 8 QELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMI 87 (330)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (330)
.+...+..+...+...|++++|.++|+...+.. |.+...+..+...+...|++++|+..++++.+.. +.+.. +..+.
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la 123 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALA 123 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHH
Confidence 344457888888888888888888888887742 4456677777788888888888888888888773 33555 77778
Q ss_pred HHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHH----------------------------
Q 037620 88 NAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFG---------------------------- 139 (330)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---------------------------- 139 (330)
.++...|+.++|+..++++.+.. |.+...+..+..++...+..+.|++.++
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~ 202 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPT 202 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccc
Confidence 88888888888888888888775 5556666666666655555554443333
Q ss_pred ------------------HHHhc-CCCCChh-hHH----HHHHHHHhhCChhHHHHHHHHHHHcCCC-CcHHHHHHHHHH
Q 037620 140 ------------------QSKKR-GFEPEAP-TYN----AVVGAYCWSMRINDAYRMMDEMRKCGIG-PNTRTYDIVLHH 194 (330)
Q Consensus 140 ------------------~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~ 194 (330)
.+.+. ...|+.. .+. ..+..+...|++++|...|+.+.+.+.+ |+. ....+..+
T Consensus 203 ~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~ 281 (765)
T PRK10049 203 RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASA 281 (765)
T ss_pred cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHH
Confidence 22221 0111111 110 1122345667788888888887776422 221 22224667
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCCCC--chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-----------Ccc---HHH
Q 037620 195 LIKAGRTEEAYSVFKRMSRKPGTEP--TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV-----------LPV---MHM 258 (330)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~ 258 (330)
|...|++++|...|+++.+.....+ .......+..++...|++++|..+++.+.+... .|+ ...
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 7788888888888887765222111 123445556667778888888888877765421 122 123
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 259 YSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 259 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
+..+...+...|+.++|+.+++++.... +.+...+..+...+...|++++|++.+++..+..+
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P 424 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEP 424 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Confidence 4455666777778888888877777643 34566667777777777777777777777766553
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=1.4e-17 Score=135.34 Aligned_cols=302 Identities=15% Similarity=0.131 Sum_probs=230.9
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCCC--------------------------------CCC-hHHHHHHHHHHh
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRRF--------------------------------DPD-IKSYTILLEGWG 56 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--------------------------------~~~-~~~~~~l~~~~~ 56 (330)
+..|..+..++...|+.+.|.+.|...++... .|. ...|..|...+-
T Consensus 150 ida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~ 229 (966)
T KOG4626|consen 150 IDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFN 229 (966)
T ss_pred hHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHh
Confidence 44566666666666666666666655554310 111 223444555555
Q ss_pred hccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHH
Q 037620 57 QQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQ 136 (330)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 136 (330)
..|+...|+..|++..+.+ +--...|-.|...|...+.+++|...|.+..... +....++..+...|...|..+.|+.
T Consensus 230 ~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~ 307 (966)
T KOG4626|consen 230 AQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAID 307 (966)
T ss_pred hcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHH
Confidence 6777777777777777653 1134567778888888888888888888877664 5567778888888888999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC
Q 037620 137 FFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPG 216 (330)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (330)
.+++..+.. +.-+..|+.|..++-..|++.+|...+.+..... +-.....+.|...+...|.+++|..+|....+
T Consensus 308 ~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~--- 382 (966)
T KOG4626|consen 308 TYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE--- 382 (966)
T ss_pred HHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh---
Confidence 999988873 3346789999999999999999999999988753 22456788899999999999999999998876
Q ss_pred CCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCcc-HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC-hhh
Q 037620 217 TEPT-VSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPV-MHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPP-GQL 293 (330)
Q Consensus 217 ~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~ 293 (330)
+.|. ....+.|...|-++|++++|+..|++.+.- .|+ ...|+.+...|-..|+.+.|++.+.+.+.. .|. ...
T Consensus 383 v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeA 458 (966)
T KOG4626|consen 383 VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEA 458 (966)
T ss_pred hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHH
Confidence 3343 456788999999999999999999998764 444 467888889999999999999999999864 344 567
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 294 FSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 294 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
+..|...|..+|+..+|+.-+++..+..+
T Consensus 459 hsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 459 HSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 88899999999999999999998887765
No 20
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.82 E-value=4.4e-16 Score=128.47 Aligned_cols=285 Identities=11% Similarity=0.042 Sum_probs=223.1
Q ss_pred cCChHHHHHHHHHHhhCCCCCChHH-HHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHH--HHHHHHhccCcHHHH
Q 037620 23 SRHVERAQEVFDKMKKRRFDPDIKS-YTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYG--IMINAHCSAKRYDEA 99 (330)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a 99 (330)
.|++++|.+.+....+.. +++.. |.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 599999998888766532 22333 333455568999999999999999876 55554333 336788899999999
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChh-------hHHHHHHHHHhhCChhHHHHH
Q 037620 100 VELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAP-------TYNAVVGAYCWSMRINDAYRM 172 (330)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~ 172 (330)
...++++.+.. |-++.....+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999887 7788999999999999999999999999999886543221 223333333444555666666
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 037620 173 MDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV 252 (330)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 252 (330)
++.+.+. .+.++.....+...+...|+.++|...+++..+ .+|+... .++.+....++.+++.+..+...+..+
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCC
Confidence 6666443 345778889999999999999999999999876 3444432 234445566999999999999988765
Q ss_pred CccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcC
Q 037620 253 LPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLR 321 (330)
Q Consensus 253 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (330)
. |+..+..+.+.+.+.+++++|.+.|+++.+. .|+...+..+..++.+.|+.++|.+++++....-
T Consensus 326 ~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 326 D-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 5 7778889999999999999999999999965 6899999999999999999999999999886543
No 21
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.82 E-value=6.6e-16 Score=128.10 Aligned_cols=292 Identities=9% Similarity=-0.018 Sum_probs=215.9
Q ss_pred HccCChHHHHHHHHHHhhCCCCCCh-HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCCh--HHHHHHHHHHhccCcHH
Q 037620 21 CKSRHVERAQEVFDKMKKRRFDPDI-KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDV--VSYGIMINAHCSAKRYD 97 (330)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~ 97 (330)
...|+++.|.+.+....+. .|+. ..+-....++...|+.+.|.+.+.+..+.. |+. .........+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHH
Confidence 3569999999999887774 3443 344455677888999999999999988763 444 34444578888999999
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHH-HHHHHH---HhhCChhHHHHHH
Q 037620 98 EAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYN-AVVGAY---CWSMRINDAYRMM 173 (330)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~ 173 (330)
.|...++.+.+.. |-++.+...+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+.....+
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999987 778889999999999999999999999999998754 333332 111222 2333333334455
Q ss_pred HHHHHcCC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 037620 174 DEMRKCGI---GPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR 250 (330)
Q Consensus 174 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 250 (330)
..+..... +.+...+..+...+...|+.++|.+++++..+.....++..............++.+.+.+.++...+.
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 55554322 137788889999999999999999999999873222221110111222234457888899999888776
Q ss_pred CCCccH--HHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHh
Q 037620 251 GVLPVM--HMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 319 (330)
Q Consensus 251 ~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (330)
.+. |+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 329 ~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 433 44 567789999999999999999999644445578988899999999999999999999998643
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=1.7e-15 Score=135.13 Aligned_cols=310 Identities=11% Similarity=0.004 Sum_probs=229.1
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHH
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIM 86 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (330)
|.+...+..+...+...|++++|+..++.+.+. .|.+.. +..+..++...|+.++|+..++++.+..+ .+...+..+
T Consensus 80 P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~l 156 (765)
T PRK10049 80 PQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEY 156 (765)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 445667888888999999999999999999885 355666 88888999999999999999999998742 255555556
Q ss_pred HHHHhccCcHHHHH----------------------------------------------HHHHHHHhc-CCCCChH-HH
Q 037620 87 INAHCSAKRYDEAV----------------------------------------------ELFREMEAT-NCKPSPH-IF 118 (330)
Q Consensus 87 l~~~~~~~~~~~a~----------------------------------------------~~~~~~~~~-~~~~~~~-~~ 118 (330)
..++...+..+.|+ +.++.+.+. ...|+.. .+
T Consensus 157 a~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~ 236 (765)
T PRK10049 157 VQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADY 236 (765)
T ss_pred HHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHH
Confidence 66665555555444 444444432 1112111 11
Q ss_pred H----HHHHHHhccCcHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCC---cHHHHHH
Q 037620 119 C----TLINGLGSEKRLSEALQFFGQSKKRGFE-PEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGP---NTRTYDI 190 (330)
Q Consensus 119 ~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ 190 (330)
. ..+..+...|++++|+..|+++.+.+.+ |+. ....+...|...|++++|...|+.+....... .......
T Consensus 237 ~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~ 315 (765)
T PRK10049 237 QRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELAD 315 (765)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHH
Confidence 1 1133456779999999999999887532 222 22335778999999999999999987653211 1345666
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCCC----------CCCc---hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHH
Q 037620 191 VLHHLIKAGRTEEAYSVFKRMSRKPG----------TEPT---VSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMH 257 (330)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 257 (330)
+..++...|++++|...++.+..... ..|+ ...+..+...+...|+.++|+++++++....+. +..
T Consensus 316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~ 394 (765)
T PRK10049 316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQG 394 (765)
T ss_pred HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH
Confidence 77788999999999999999876321 1223 234556778889999999999999999887554 678
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 258 MYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 258 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
.+..+...+...|++++|++.+++.++.. +.+...+...+..+.+.|++++|..+++++.+..+
T Consensus 395 l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 395 LRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 89999999999999999999999999764 33466777777889999999999999999987654
No 23
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.80 E-value=7.1e-19 Score=138.85 Aligned_cols=259 Identities=14% Similarity=0.168 Sum_probs=73.5
Q ss_pred HHHHhhccChHHHHHHHHHHHhCC-CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCc
Q 037620 52 LEGWGQQKNLLSMNEVYREMKDDG-FEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKR 130 (330)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 130 (330)
...+.+.|++++|++++....... .+.+...|..+...+...++++.|.+.++++...+ +.++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 445555556666666554433322 12233334444444455555666666666655544 3344445555544 45556
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 037620 131 LSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG-IGPNTRTYDIVLHHLIKAGRTEEAYSVFK 209 (330)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 209 (330)
+++|.+++....+. .++...+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|...++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666555554433 2344445555555556666666666666554321 23344555555566666666666666666
Q ss_pred HhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC
Q 037620 210 RMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP 289 (330)
Q Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 289 (330)
+..+ ..+.|......++..+...|+.+++.++++...+.. ..|+..+..+..++...|+.++|+.++++..... +.
T Consensus 171 ~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 171 KALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 6554 122234445555666666666666665555555442 2244445556666666666666666666665533 33
Q ss_pred ChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 037620 290 PGQLFSNLKQALRDEGMEETAVVLAQKID 318 (330)
Q Consensus 290 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (330)
|+.....+..++...|+.++|.++.++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 55555566666666666666666655443
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=3e-15 Score=116.83 Aligned_cols=247 Identities=15% Similarity=0.281 Sum_probs=191.7
Q ss_pred CCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHH
Q 037620 6 LKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGI 85 (330)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (330)
.|-+..+|..+|.++++-...+.|.+++++-.....+.+..+||.+|.+-.-. .-.+++.+|....+.||..|+|+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHH
Confidence 35577899999999999999999999999998887888999999999765433 22789999999999999999999
Q ss_pred HHHHHhccCcHHH----HHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHH-HHHHHHHHHhc----CCC----CChhh
Q 037620 86 MINAHCSAKRYDE----AVELFREMEATNCKPSPHIFCTLINGLGSEKRLSE-ALQFFGQSKKR----GFE----PEAPT 152 (330)
Q Consensus 86 ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~~----~~~~~ 152 (330)
++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+.+.++..+ +..++..+... .+. .+...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 9999999998764 57788899999999999999999999999888754 45555555432 122 24445
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHcC----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHH
Q 037620 153 YNAVVGAYCWSMRINDAYRMMDEMRKCG----IGPN---TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYE 225 (330)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 225 (330)
|..-+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....+.....+.-...|+.+.. .-+-|+..+..
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP-~~y~p~~~~m~ 437 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP-SAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ceecCCchhHH
Confidence 6677788888888888887766554311 2232 23455666777778888888888888876 56678888888
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCccHH
Q 037620 226 IVVRMFCYNAQVDMAMRIWDEMKARGVLPVMH 257 (330)
Q Consensus 226 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 257 (330)
.++++....+.++-..++|.+++..|...+..
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~ 469 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGHTFRSD 469 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhhhhhHH
Confidence 88888888888888888888888776443333
No 25
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.79 E-value=9.3e-19 Score=138.18 Aligned_cols=262 Identities=14% Similarity=0.116 Sum_probs=114.1
Q ss_pred HHHHHHHccCChHHHHHHHHHHhhCC-CCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhcc
Q 037620 15 RLIDTLCKSRHVERAQEVFDKMKKRR-FDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSA 93 (330)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 93 (330)
.+...+.+.|++++|+++++...... .+.+...|..+...+...++++.|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 66888999999999999997655433 2445566677777888899999999999999987533 66677777777 789
Q ss_pred CcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhhCChhHHHHH
Q 037620 94 KRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRG-FEPEAPTYNAVVGAYCWSMRINDAYRM 172 (330)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (330)
+++++|.++++...+.. +++..+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999998876543 567778888999999999999999999987543 345777888899999999999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 037620 173 MDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV 252 (330)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 252 (330)
+++..+..+ .+......++..+...|+.+++..+++...+. .+.+...+..+..++...|+.++|..++++..+...
T Consensus 169 ~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 169 YRKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 999998742 25778889999999999999999999888763 245566778899999999999999999999988654
Q ss_pred CccHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 253 LPVMHMYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 253 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
. |+.....+..++...|+.++|..+.+++..
T Consensus 246 ~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 D-DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T--HHHHHHHHHHHT-----------------
T ss_pred c-cccccccccccccccccccccccccccccc
Confidence 4 888889999999999999999999887753
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.77 E-value=3.9e-14 Score=127.31 Aligned_cols=303 Identities=10% Similarity=0.011 Sum_probs=212.0
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhC-C-CCCChHHHHHHHHHHhhccC---hHHHHHH----------------
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKR-R-FDPDIKSYTILLEGWGQQKN---LLSMNEV---------------- 67 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~a~~~---------------- 67 (330)
+....-.+-....+.|+.++|.++|+..... + ..++.....-++..|.+.+. ..++..+
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 454 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL 454 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence 3344444455567788888998888887762 1 12233444466666666655 2233222
Q ss_pred ------HHHHHhC-C-CCC--ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHH
Q 037620 68 ------YREMKDD-G-FEP--DVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQF 137 (330)
Q Consensus 68 ------~~~~~~~-~-~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 137 (330)
....... + .++ +...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...
T Consensus 455 ~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~ 531 (987)
T PRK09782 455 PGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAA 531 (987)
T ss_pred hhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHH
Confidence 1111111 1 133 56677777777766 78888888888777654 4544444445555688999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC
Q 037620 138 FGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGT 217 (330)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 217 (330)
++++... +|+...+..+...+.+.|++++|...++...+.. +.....+..+.......|++++|...+++..+ .
T Consensus 532 ~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l 605 (987)
T PRK09782 532 WQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---I 605 (987)
T ss_pred HHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---h
Confidence 9887655 4455556667778888899999999998888764 22333333444444566999999999998876 4
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 037620 218 EPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNL 297 (330)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 297 (330)
.|+...+..+..++.+.|++++|...+++..+..+. +...++.+..++...|++++|+..+++.++.. +-+...+..+
T Consensus 606 ~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nL 683 (987)
T PRK09782 606 APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQL 683 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 456777888888899999999999999998887655 66778888888888999999999999888754 3467778888
Q ss_pred HHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 298 KQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 298 ~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
..++...|++++|...+++..+..+
T Consensus 684 A~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 684 AYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 8889999999999999988877664
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.76 E-value=1.8e-14 Score=129.38 Aligned_cols=270 Identities=8% Similarity=-0.023 Sum_probs=213.4
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLIN 123 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (330)
+...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...|+++... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 67788888887776 8899999988888776 456555444555667899999999999998654 455556677788
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHH
Q 037620 124 GLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEE 203 (330)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (330)
.+.+.|++++|...+.+..+.. +.....+..+.......|++++|...+++..+.. |+...+..+..++.+.|++++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHH
Confidence 8999999999999999998874 3333333333344445699999999999998854 568889999999999999999
Q ss_pred HHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 037620 204 AYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEML 283 (330)
Q Consensus 204 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (330)
|...+++... ..+.+...+..+..++...|++++|+..+++..+..+. +...+..+..++...|++++|+..+++..
T Consensus 628 A~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 628 AVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999987 23445667888888999999999999999999987654 67889999999999999999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCCCC
Q 037620 284 DIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTPL 325 (330)
Q Consensus 284 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 325 (330)
+.. +-+..+.........+..+++.+.+-++......+..+
T Consensus 705 ~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 705 DDI-DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred hcC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 754 22345555667777777888888888877766655443
No 28
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.76 E-value=5.7e-14 Score=108.77 Aligned_cols=293 Identities=12% Similarity=0.095 Sum_probs=234.9
Q ss_pred cCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHH
Q 037620 23 SRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVEL 102 (330)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 102 (330)
.|+|.+|+++..+-.+.+- .....|..-..+.-+.|+.+.+-.++.+..+..-.++....-+........|+...|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 5999999999998777653 234567777788889999999999999998874455666777778889999999999999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCCh-------hhHHHHHHHHHhhCChhHHHHHHHH
Q 037620 103 FREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEA-------PTYNAVVGAYCWSMRINDAYRMMDE 175 (330)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (330)
++++.+.+ +-++.......++|.+.|++.....++..+.+.+.-.+. .+|..+++-....+..+.....++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 99999887 778889999999999999999999999999998866554 3466666666666666666667776
Q ss_pred HHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCcc
Q 037620 176 MRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPV 255 (330)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 255 (330)
.... .+-++..-..++.-+.+.|+.++|.++..+..+ ....|+. ...-.+.+-++...-.+..+.-.+.... +
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~ 327 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPE-D 327 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCC-C
Confidence 6543 445677778888999999999999999999887 4555552 2223456777888777777766554322 4
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCCCCC
Q 037620 256 MHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTPLV 326 (330)
Q Consensus 256 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 326 (330)
+..+.+|...|.+.+.|.+|...|+...+. .|+..+|..+.+++.+.|+.++|.++.++....-.+|+.
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~ 396 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL 396 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence 578899999999999999999999988754 799999999999999999999999999998866665543
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=7.7e-14 Score=122.95 Aligned_cols=299 Identities=14% Similarity=0.122 Sum_probs=175.7
Q ss_pred HHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHH
Q 037620 19 TLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDE 98 (330)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 98 (330)
.+...|++++|+++|+.+.+.. |-+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+
T Consensus 111 ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~ 187 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHH
Confidence 4445555555555555555532 223444445555555555555555555555544 3333333333333333344444
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHH--------------------------------------
Q 037620 99 AVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQ-------------------------------------- 140 (330)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------------------------------------- 140 (330)
|++.++++.+.. |.+...+..+..+..+.|-...|.++..+
T Consensus 188 AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 188 ALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 555666555554 44444444444444444433333322221
Q ss_pred ----------HHhc-CCCCCh-hhH----HHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHH
Q 037620 141 ----------SKKR-GFEPEA-PTY----NAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEA 204 (330)
Q Consensus 141 ----------~~~~-~~~~~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 204 (330)
+... +-.|.. ..| .-.+-++...++..++++.++.+...+.+....+-..+..+|...+++++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 1110 000110 011 122344556677788888888888776655566777888888888888888
Q ss_pred HHHHHHhhcCCC----CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-----------CccH---HHHHHHHHHH
Q 037620 205 YSVFKRMSRKPG----TEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV-----------LPVM---HMYSTLINSL 266 (330)
Q Consensus 205 ~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~ 266 (330)
..+++.+....+ ..++......|..++..++++++|..+++.+.+..+ .||+ ..+..++..+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 888888765322 123343356788888888888888888888876322 1222 2234456677
Q ss_pred hccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 267 CHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 267 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
...|+..+|.+.++++.... +-|......+...+...|.+.+|.+.++......+
T Consensus 427 ~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P 481 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAP 481 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Confidence 78888888888888887654 45777788888888888888888888877665543
No 30
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=3.6e-15 Score=122.31 Aligned_cols=288 Identities=11% Similarity=0.070 Sum_probs=224.1
Q ss_pred ChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCC--CCChHHHHHHHHHHhccCcHHHHHHH
Q 037620 25 HVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGF--EPDVVSYGIMINAHCSAKRYDEAVEL 102 (330)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~ 102 (330)
+.++|+..|..+.+. +.-+......+..+|...+++++|.++|+.+.+... .-+...|.+.+--+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 567899999996663 344557777889999999999999999999987621 1255667766643322 122333
Q ss_pred H-HHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCC
Q 037620 103 F-REMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGI 181 (330)
Q Consensus 103 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (330)
+ +.+.+.. +..+.+|.++.++|.-.++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+.......
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 3 3344444 6788999999999999999999999999999884 33778899888888999999999999998876432
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHH
Q 037620 182 GPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYST 261 (330)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 261 (330)
+ +-..|..+.-.|.+.++++.|+-.|++..+ --+-+.+....+...+.+.|+.++|+.++++....+.+ |+-.--.
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 2 334566677889999999999999999876 33445666777788889999999999999999988766 5555555
Q ss_pred HHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCCC
Q 037620 262 LINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTP 324 (330)
Q Consensus 262 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 324 (330)
.+..+...+++++|+..++++.+.- +.+...|..+.+.|.+.|+.+.|..-+.-+....+++
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 6677788999999999999998752 3456678888999999999999998888777766654
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=2.1e-14 Score=112.22 Aligned_cols=308 Identities=18% Similarity=0.273 Sum_probs=233.7
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHH--hhccChHH-HHHHHHHHHhCC-----------
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGW--GQQKNLLS-MNEVYREMKDDG----------- 75 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~-a~~~~~~~~~~~----------- 75 (330)
+.+=|.|+.. ...|.++++.-+|+.|.+.|++.+...-..|++.- ....++-- -++.|-.|...|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 3445566544 46788999999999999999888887766665542 22222211 122333333221
Q ss_pred --------CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCC
Q 037620 76 --------FEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFE 147 (330)
Q Consensus 76 --------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (330)
.+.+..++..+|.++++-...++|.++|++-.....+.+..+||.+|.+-.-.. ..+++.+|....+.
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcC
Confidence 244778999999999999999999999999988777999999999987654332 27788999999999
Q ss_pred CChhhHHHHHHHHHhhCChhH----HHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHH-HHHHHHHhhc-------CC
Q 037620 148 PEAPTYNAVVGAYCWSMRIND----AYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEE-AYSVFKRMSR-------KP 215 (330)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~-------~~ 215 (330)
||..|+|+++++..+.|+++. |.+++.+|.+.|+.|...+|..+|..+.+.++..+ +..++..+.. ++
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 999999999999999998765 56788899999999999999999999998887744 4444444432 11
Q ss_pred CCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCCcc---HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC
Q 037620 216 GTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR----GVLPV---MHMYSTLINSLCHEDKLDDACKYFQEMLDIGIR 288 (330)
Q Consensus 216 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 288 (330)
..+.+...|...+..|.+..+.+.|.++..-+... -+.|+ ..-|..+....++....+.-..+|+.|+-.-+-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 22334556777888888999999888887666532 12222 233566777888899999999999999987788
Q ss_pred CChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 289 PPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 289 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
|+..+...++++..-.|.++-.-++|.++...|.
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 9999999999999999999999999999887774
No 32
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=1.6e-13 Score=121.06 Aligned_cols=295 Identities=13% Similarity=0.078 Sum_probs=213.4
Q ss_pred HHHHccCChHHHHHHHHHHhhCCCCCCh--HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCc
Q 037620 18 DTLCKSRHVERAQEVFDKMKKRRFDPDI--KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKR 95 (330)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 95 (330)
-...+.|+++.|++.|++..+.. |+. ..+ .++..+...|+.++|+..+++..... +........+...+...|+
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCC
Confidence 35668899999999999998753 443 233 77788888899999999999988321 2233334444668888899
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHH
Q 037620 96 YDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDE 175 (330)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (330)
+++|+++|+++.+.. |.++..+..++..+...++.++|++.+.++... .|+...+..++..+...++..+|+..+++
T Consensus 118 yd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 118 WDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 999999999999887 667788888888999999999999999999877 45555554444444445666669999999
Q ss_pred HHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH----------------------------------------------
Q 037620 176 MRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFK---------------------------------------------- 209 (330)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---------------------------------------------- 209 (330)
+.+.. +.+...+..+..++.+.|-...|.++..
T Consensus 195 ll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 195 AVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 98864 2355566666666655554444433333
Q ss_pred --HhhcCCCCCCch-HH----HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHH
Q 037620 210 --RMSRKPGTEPTV-ST----YEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEM 282 (330)
Q Consensus 210 --~~~~~~~~~~~~-~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 282 (330)
.+...-+..|.. .. ..-.+-++...|++.++++.|+.+...+......+-..+..+|...+.+++|..+++.+
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 222211222321 11 12334567788999999999999998876544557788999999999999999999999
Q ss_pred HhcC-----CCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhc
Q 037620 283 LDIG-----IRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKL 320 (330)
Q Consensus 283 ~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (330)
.... ..++......|..++...+++++|..+++++.+.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 7643 1223333577899999999999999999999874
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.73 E-value=1.1e-13 Score=117.43 Aligned_cols=309 Identities=12% Similarity=0.092 Sum_probs=226.1
Q ss_pred CCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHH
Q 037620 6 LKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGI 85 (330)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (330)
++|.....-.....+...|++++|.+++.++.+.. |.....|.+|...|-..|+.+++...+-...... +-|...|..
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ 212 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKR 212 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHH
Confidence 33444444555555566699999999999999853 6678899999999999999999998887776654 447789999
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHH----HHHHHHH
Q 037620 86 MINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYN----AVVGAYC 161 (330)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~ 161 (330)
+.....+.|.+.+|.-+|.+.++.. |++...+-.-...|-+.|+...|...|.++.+...+.+..-+. ..++.+.
T Consensus 213 ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 213 LADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987 7787777778889999999999999999998874322222222 3344555
Q ss_pred hhCChhHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---------------------------
Q 037620 162 WSMRINDAYRMMDEMRKC-GIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSR--------------------------- 213 (330)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------------------- 213 (330)
..++-+.|.+.++..... +-..+...++.++..+.+..+++.|.........
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~ 371 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVG 371 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCC
Confidence 666667777777766541 2223444556666666666666665555444332
Q ss_pred ---------------------------------CCC--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHH
Q 037620 214 ---------------------------------KPG--TEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHM 258 (330)
Q Consensus 214 ---------------------------------~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 258 (330)
... ..-+...|.-+..++.+.|++.+|..++..+......-+...
T Consensus 372 ~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v 451 (895)
T KOG2076|consen 372 KELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV 451 (895)
T ss_pred CCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence 011 112334456677788888888888888888887655556778
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 037620 259 YSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKID 318 (330)
Q Consensus 259 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (330)
|-.+.++|...|.+++|...|++.+... +.+...-..|...+.+.|+.++|.++++.+.
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 8888888888888999999888888653 3345566677778888889988888888765
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=1e-13 Score=114.51 Aligned_cols=256 Identities=9% Similarity=0.053 Sum_probs=202.6
Q ss_pred HHHHHccCChHHHHHHHHHHhhCCCCCChHHHH--HHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC
Q 037620 17 IDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYT--ILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAK 94 (330)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 94 (330)
.....+.|+++.|.+.+..+.+. .|+..... .....+...|+++.|...++.+.+.. +-+...+..+...|.+.|
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~g 201 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTG 201 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHH
Confidence 44558899999999999999874 45554333 33678889999999999999999886 447788889999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCCh-------HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChh
Q 037620 95 RYDEAVELFREMEATNCKPSP-------HIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIN 167 (330)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (330)
++++|.+++..+.+.+..++. .+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.+
T Consensus 202 dw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~ 280 (398)
T PRK10747 202 AWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHD 280 (398)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHH
Confidence 999999999999987644322 13333444444555666777777776554 3557888899999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 037620 168 DAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEM 247 (330)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 247 (330)
+|..++++..+. +++... .++.+....++.+++....+...+ ..+-|...+..+...+...+++++|.+.|+..
T Consensus 281 ~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~a 354 (398)
T PRK10747 281 TAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAA 354 (398)
T ss_pred HHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999884 345422 233344456999999999999887 34455667788999999999999999999999
Q ss_pred HhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 248 KARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
.+. .|+...+..+...+.+.|+.++|..++++.+.
T Consensus 355 l~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 355 LKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred Hhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 876 57888889999999999999999999998864
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.71 E-value=1.1e-13 Score=114.88 Aligned_cols=274 Identities=8% Similarity=-0.040 Sum_probs=198.2
Q ss_pred CCChhh-HHHHHHHHHccCChHHHHHHHHHHhhCCCCCCh--HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHH
Q 037620 7 KQELPD-FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDI--KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSY 83 (330)
Q Consensus 7 ~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (330)
.|+... +-.....+...|+.+.|.+.+....+.. |+. .........+...|+++.|...++.+.+.. +-+...+
T Consensus 114 ~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l 190 (409)
T TIGR00540 114 AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVL 190 (409)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 344333 3444577888899999999999987643 443 344445788889999999999999999985 3377788
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHH-HHHHHH---hccCcHHHHHHHHHHHHhcC---CCCChhhHHHH
Q 037620 84 GIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFC-TLINGL---GSEKRLSEALQFFGQSKKRG---FEPEAPTYNAV 156 (330)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l 156 (330)
..+...+...|++++|.+.+..+.+.+.. +...+. .-...+ ...+..+...+.+..+.+.. .+.+...+..+
T Consensus 191 ~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~ 269 (409)
T TIGR00540 191 KLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIAL 269 (409)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHH
Confidence 89999999999999999999999988743 333332 111111 22233333334444444432 12378888999
Q ss_pred HHHHHhhCChhHHHHHHHHHHHcCCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCC
Q 037620 157 VGAYCWSMRINDAYRMMDEMRKCGIGPNTRTY-DIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNA 235 (330)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (330)
...+...|+.++|.+++++..+.........+ ..........++.+.+.+.++...+.....|+.....++...+.+.|
T Consensus 270 a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~ 349 (409)
T TIGR00540 270 AEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHG 349 (409)
T ss_pred HHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcc
Confidence 99999999999999999999986432221111 11112223457888899999888774333343256678899999999
Q ss_pred CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 236 QVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 350 ~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 350 EFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred cHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999655555578888899999999999999999999998754
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.6e-13 Score=108.20 Aligned_cols=291 Identities=11% Similarity=0.085 Sum_probs=215.0
Q ss_pred HHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCC--CCChHHHHHHHHHHhccCc
Q 037620 18 DTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGF--EPDVVSYGIMINAHCSAKR 95 (330)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~ 95 (330)
.++....+.+++..-.+.....|.+-+...-+....+.-...++++|+.+|+++.+..+ --|..+|..++-. +..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhhh
Confidence 34445567788888888888878776666666666667778899999999999988731 1155677666533 3322
Q ss_pred HHHHHHHHH-HHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHH
Q 037620 96 YDEAVELFR-EMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMD 174 (330)
Q Consensus 96 ~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 174 (330)
.. +..+- .....+ +--+.|...+.+-|+-.++.++|...|++..+.+ +.....|+.+..-|....+...|.+.++
T Consensus 313 sk--Ls~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 313 SK--LSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HH--HHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 11 12221 122222 4456678888888999999999999999999886 4466788889999999999999999999
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCc
Q 037620 175 EMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLP 254 (330)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 254 (330)
...+.+ +-|-..|-.+.++|.-.+.+.=|+-.|++..+ -.+-|...|.+|..+|.+.++.++|++.|.+....|-.
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt- 464 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT- 464 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-
Confidence 998865 34788999999999999999999999999876 34457788999999999999999999999998887644
Q ss_pred cHHHHHHHHHHHhccCChhHHHHHHHHHHh----cCC-CC-ChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 037620 255 VMHMYSTLINSLCHEDKLDDACKYFQEMLD----IGI-RP-PGQLFSNLKQALRDEGMEETAVVLAQKID 318 (330)
Q Consensus 255 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (330)
+...+..|...|-+.++.++|...|++-++ .|. .| ......-|...+.+.+++++|........
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 667899999999999999999998887764 232 22 12222335556677777777766554443
No 37
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.70 E-value=3.5e-13 Score=101.62 Aligned_cols=287 Identities=13% Similarity=0.125 Sum_probs=212.6
Q ss_pred cCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCCh------HHHHHHHHHHhccCcH
Q 037620 23 SRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDV------VSYGIMINAHCSAKRY 96 (330)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~~~~ 96 (330)
.++.++|.++|-+|.+. -+-+..+--+|.+.|.+.|..+.|+++.+.+.++ ||. .....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~-d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE-DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhc-CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 57899999999999984 2445566778889999999999999999999875 332 2345567788899999
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChh----hHHHHHHHHHhhCChhHHHHH
Q 037620 97 DEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAP----TYNAVVGAYCWSMRINDAYRM 172 (330)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~ 172 (330)
+.|+.+|..+.+.+ .--......|+..|-...+|++|+++-.++.+.+-.+... .|--+...+....+++.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999998865 4556778889999999999999999999988875433221 233344444556789999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 037620 173 MDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV 252 (330)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 252 (330)
+.+..+.+.. ....--.+.+.+...|+++.|.+.++.+.+. +..--..+...|..+|...|+.++....+.++.+...
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 9998886432 4445556678888999999999999999872 3333345677888999999999999999999887644
Q ss_pred CccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---cCchHHHHHHHHHHHhc
Q 037620 253 LPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRD---EGMEETAVVLAQKIDKL 320 (330)
Q Consensus 253 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~ 320 (330)
.++ .-..+.+.-....-.+.|...+.+-+.. .|+...+..++..... .|...+....+++|...
T Consensus 281 g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 281 GAD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred Ccc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 333 3334444334444556677666665543 6899999999886543 44567777777777643
No 38
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=4.6e-13 Score=101.00 Aligned_cols=256 Identities=11% Similarity=0.077 Sum_probs=197.2
Q ss_pred hccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCC---ChHHHHHHHHHHhccCcHHH
Q 037620 57 QQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKP---SPHIFCTLINGLGSEKRLSE 133 (330)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~ 133 (330)
-.++.++|.++|-+|.+.. +-+..+--+|.+.|.+.|..++|+++.+.+.++.--+ ...+...|..-|...|-++.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3578999999999999863 3355566788899999999999999999988653111 12344567788999999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcH----HHHHHHHHHHHHcCCHHHHHHHHH
Q 037620 134 ALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNT----RTYDIVLHHLIKAGRTEEAYSVFK 209 (330)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~ 209 (330)
|+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+..+.. ..|..+...+....+.+.|..++.
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999998865 334567788999999999999999999999887654432 456777777888899999999999
Q ss_pred HhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC
Q 037620 210 RMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP 289 (330)
Q Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 289 (330)
+..+. .+..+..--.+.+.....|+++.|.+.|+.+.+.+...-+.+...|..+|.+.|+.++...++.++.+.. +
T Consensus 205 kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~ 280 (389)
T COG2956 205 KALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--T 280 (389)
T ss_pred HHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--C
Confidence 98862 2334444456778889999999999999999999877777889999999999999999999999998754 3
Q ss_pred ChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 037620 290 PGQLFSNLKQALRDEGMEETAVVLAQKID 318 (330)
Q Consensus 290 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (330)
....-..+.+.-....-.+.|..++.+-.
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql 309 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQL 309 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 44444444444444444555555554433
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=1e-13 Score=113.93 Aligned_cols=268 Identities=11% Similarity=0.038 Sum_probs=210.4
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCC--CCCChHHHHHHHHHHhhccChHHHHHHH-HHHHhCCCCCChHHHHHH
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRR--FDPDIKSYTILLEGWGQQKNLLSMNEVY-REMKDDGFEPDVVSYGIM 86 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l 86 (330)
..+...+..+|...+++++|..+|+.+.+.. ..-+...|.+.+..+-+ +-++..+ +.+.+.. +-.+.+|.++
T Consensus 353 ~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~Laq~Li~~~-~~sPesWca~ 427 (638)
T KOG1126|consen 353 GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLAQDLIDTD-PNSPESWCAL 427 (638)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHHHHHHhhC-CCCcHHHHHh
Confidence 3566778889999999999999999998742 12267788888865533 2223333 3344432 5578999999
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCh
Q 037620 87 INAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRI 166 (330)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (330)
.++|.-+++.+.|++.|++..+.+ +....+|+.+..-+....++|.|...|+...... +.+-..|--+...|.+.+++
T Consensus 428 GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~ 505 (638)
T KOG1126|consen 428 GNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKL 505 (638)
T ss_pred cchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchh
Confidence 999999999999999999999887 5689999999999999999999999999987652 22333455567789999999
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Q 037620 167 NDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDE 246 (330)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 246 (330)
+.|+-.|+...+.+.. +......+...+.+.|+.++|+.++++...- .+-|+..--.-+..+...+++++|+..+++
T Consensus 506 e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~~~~~il~~~~~~~eal~~LEe 582 (638)
T KOG1126|consen 506 EFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKYHRASILFSLGRYVEALQELEE 582 (638)
T ss_pred hHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHHHHHHHHHhhcchHHHHHHHHH
Confidence 9999999999886533 5666777788889999999999999998762 223343434456677889999999999999
Q ss_pred HHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC
Q 037620 247 MKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIR 288 (330)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 288 (330)
+++.-+. +...|..+...|.+.|+.+.|+.-|.-+.+...+
T Consensus 583 Lk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 583 LKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 9987433 6677888899999999999999999888865433
No 40
>PRK12370 invasion protein regulator; Provisional
Probab=99.66 E-value=7.8e-13 Score=113.99 Aligned_cols=268 Identities=11% Similarity=0.051 Sum_probs=186.9
Q ss_pred CCChHHHHHHHHHHhh-----ccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHh---------ccCcHHHHHHHHHHHH
Q 037620 42 DPDIKSYTILLEGWGQ-----QKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHC---------SAKRYDEAVELFREME 107 (330)
Q Consensus 42 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~ 107 (330)
+.+...|...+.+... .+++++|..+|++..+.. +-+...|..+..++. ..+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4566666666655322 245678999999998874 224555655555443 2345889999999999
Q ss_pred hcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHH
Q 037620 108 ATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRT 187 (330)
Q Consensus 108 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 187 (330)
+.+ |.+..++..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|...+++..+.... +...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 887 7788888888889999999999999999998885 445677888888999999999999999999886433 2233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 037620 188 YDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEP-TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSL 266 (330)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 266 (330)
+..++..+...|++++|...+++.... .+| +...+..+..++...|++++|...++++...... +....+.+...|
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~ 485 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEY 485 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHH
Confidence 334455567789999999999988752 223 3445677788888999999999999887655322 344455666677
Q ss_pred hccCChhHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcC
Q 037620 267 CHEDKLDDACKYFQEMLDI-GIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLR 321 (330)
Q Consensus 267 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (330)
...| +.|...++++.+. ...+....+ +...+.-.|+.+.+..+ +++.+.+
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7777 4788877777652 112222222 33444555666666555 6666544
No 41
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.65 E-value=5.6e-13 Score=102.70 Aligned_cols=202 Identities=14% Similarity=0.049 Sum_probs=120.5
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 037620 115 PHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHH 194 (330)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (330)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+... .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 3445555555555666666666665555442 22344555555556666666666666665555432 234455555666
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhH
Q 037620 195 LIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDD 274 (330)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 274 (330)
+...|++++|...+++.............+..+...+...|++++|...+++..+.... +...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 66666666666666666542222223344555666677777777777777776665432 44566667777777777777
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhc
Q 037620 275 ACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKL 320 (330)
Q Consensus 275 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (330)
|...+++..+. .+.+...+..+...+...|+.++|..+.+.+...
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 77777777665 2344555556666677777777777776666543
No 42
>PRK12370 invasion protein regulator; Provisional
Probab=99.64 E-value=2.1e-12 Score=111.38 Aligned_cols=250 Identities=16% Similarity=0.130 Sum_probs=151.9
Q ss_pred ChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhh---------ccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCc
Q 037620 25 HVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQ---------QKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKR 95 (330)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 95 (330)
++++|...|++..+.. |-+...|..+..++.. .+++++|...+++..+.+ +-+...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 3567777777777642 2344556555544432 234677888888777764 3366677777777777788
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHH
Q 037620 96 YDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDE 175 (330)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (330)
+++|...|++..+.+ |.+...+..+..++...|++++|...++++.+.... +...+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 888888888877776 556677777777788888888888888887776421 222333344445567777888888777
Q ss_pred HHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-CCCc
Q 037620 176 MRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR-GVLP 254 (330)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~ 254 (330)
......+.+...+..+..++...|+.++|...+.++.. ..+.+....+.+...|...| +.|...++.+.+. .-.+
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 76543222444566666777778888888888777654 12223334445555566666 3666666665542 1112
Q ss_pred cHHHHHHHHHHHhccCChhHHHHHHHHHHhc
Q 037620 255 VMHMYSTLINSLCHEDKLDDACKYFQEMLDI 285 (330)
Q Consensus 255 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 285 (330)
....+ +-..+.-.|+.+.+..+ +++.+.
T Consensus 508 ~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 508 NNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 11122 23334445665555554 666554
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.5e-12 Score=105.35 Aligned_cols=291 Identities=10% Similarity=0.036 Sum_probs=235.5
Q ss_pred CCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHH
Q 037620 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYG 84 (330)
Q Consensus 5 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (330)
|+.-++.....-.+.+...+++.+..++++.+.+. .|+....+..-|.++...|+..+...+=.+|.+. .|-.+.+|-
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~ 316 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWF 316 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchh
Confidence 45566777777888888999999999999999985 4778888888888999999999888888888887 355789999
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhC
Q 037620 85 IMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSM 164 (330)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (330)
++.-.|...|...+|.+.|.+....+ +.-...|-....+|.-.|..++|...+..+.+.= +-.-.-+--+.--|.+.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhc
Confidence 99999999999999999999988766 5556789999999999999999999998887651 111112233444577889
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC----CC-CchHHHHHHHHHHHhCCCHHH
Q 037620 165 RINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPG----TE-PTVSTYEIVVRMFCYNAQVDM 239 (330)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~ 239 (330)
+.+.|.+.|.+..... +.|+...+-+.-.....+.+.+|..+|+.....-. -. --..+++.|..+|.+.+.+++
T Consensus 395 n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 9999999999988753 44777888888777888999999999988763111 11 133468899999999999999
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 037620 240 AMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRD 303 (330)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 303 (330)
|+..++........ +..++.++.-.|...|+++.|.+.|.+.+ .+.|+..+...++..+..
T Consensus 474 AI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 474 AIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHH
Confidence 99999999988666 88899999999999999999999999998 567888777766665443
No 44
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.64 E-value=6.1e-12 Score=97.73 Aligned_cols=268 Identities=9% Similarity=0.077 Sum_probs=217.0
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHh
Q 037620 12 DFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHC 91 (330)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 91 (330)
.|-.-..+.-..|+.+.+-.++.+..+....++...+-+........|+.+.|..-++++.+.+ +-++........+|.
T Consensus 120 ~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~ 198 (400)
T COG3071 120 AYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYI 198 (400)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHH
Confidence 4555567777889999999999999886445667778888889999999999999999999986 447788889999999
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCCh-------HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhC
Q 037620 92 SAKRYDEAVELFREMEATNCKPSP-------HIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSM 164 (330)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (330)
+.|++.....++.++.+.+.-.++ .+|..+++-....+..+.-...++...+. ...++..-..++.-+..+|
T Consensus 199 ~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~ 277 (400)
T COG3071 199 RLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLG 277 (400)
T ss_pred HhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcC
Confidence 999999999999999998865544 46677777777777777767777777655 3556777888889999999
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHH
Q 037620 165 RINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244 (330)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 244 (330)
+.++|.++.++..+++..|+ .. ..-.+.+.++...-.+..+.-.+..+..| ..+.+|...|.+++.|.+|...|
T Consensus 278 ~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~l 351 (400)
T COG3071 278 DHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEAL 351 (400)
T ss_pred ChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999876655 22 22334567788887777777766445555 67889999999999999999999
Q ss_pred HHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC
Q 037620 245 DEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP 289 (330)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 289 (330)
+...+. .|+..+|+.+..++.+.|+..+|.++.++.+-.-.+|
T Consensus 352 eaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 352 EAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 976664 6899999999999999999999999999877433333
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=4.8e-12 Score=100.11 Aligned_cols=250 Identities=11% Similarity=0.111 Sum_probs=177.9
Q ss_pred ChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCC--CCChHHHHHHHHHHhccCcHH-HHHH
Q 037620 60 NLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNC--KPSPHIFCTLINGLGSEKRLS-EALQ 136 (330)
Q Consensus 60 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~-~a~~ 136 (330)
+.+++..-...+...|.+-+...-+....+.....+++.|+.+|+++.+... -.|.++|+.++-+-.....+. .|..
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 3344444444444445444443334444444555566666666666655430 113445554442221111111 0111
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC
Q 037620 137 FFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPG 216 (330)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (330)
++ .+. +-.+.|.-.+.+-|.-.++.+.|...|++..+.+.. ....|+.+.+-|....+...|.+.++...+ -
T Consensus 322 v~-~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i 393 (559)
T KOG1155|consen 322 VS-NID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD--I 393 (559)
T ss_pred HH-Hhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh--c
Confidence 11 111 123445556666777788999999999999986533 567899999999999999999999999987 4
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHH
Q 037620 217 TEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSN 296 (330)
Q Consensus 217 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 296 (330)
.+.|-..|-.|.++|.-.+.+.=|+-.|++..+..+. |...|.+|..+|.+.++.++|++.|.+....| ..+...+..
T Consensus 394 ~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~ 471 (559)
T KOG1155|consen 394 NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVR 471 (559)
T ss_pred CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHH
Confidence 5668889999999999999999999999999887655 88999999999999999999999999999876 457789999
Q ss_pred HHHHHHhcCchHHHHHHHHHHHh
Q 037620 297 LKQALRDEGMEETAVVLAQKIDK 319 (330)
Q Consensus 297 l~~~~~~~g~~~~a~~~~~~~~~ 319 (330)
|.+.|.+.++.++|.+.+++-.+
T Consensus 472 LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999887665
No 46
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.61 E-value=2e-12 Score=99.59 Aligned_cols=198 Identities=10% Similarity=0.004 Sum_probs=103.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 037620 81 VSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAY 160 (330)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (330)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 334444455555555555555555544433 3334444455555555555555555555554442 22334444455555
Q ss_pred HhhCChhHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHH
Q 037620 161 CWSMRINDAYRMMDEMRKCGI-GPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDM 239 (330)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (330)
...|++++|...++....... +.....+..+...+...|++++|...+.+.... .+.+...+..+...+...|++++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHH
Confidence 555555555555555544211 112234444555566666666666666665541 12234455556666666666666
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 037620 240 AMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEML 283 (330)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (330)
|...+++..+.. ..+...+..+...+...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666666665542 2244445555556666666666666665554
No 47
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.61 E-value=1.6e-11 Score=102.85 Aligned_cols=295 Identities=16% Similarity=0.131 Sum_probs=212.4
Q ss_pred HHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhc---
Q 037620 16 LIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCS--- 92 (330)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--- 92 (330)
-...+...|++++|++.++.-.. .+.............+.+.|+.++|..+|..+++.+ +.|..-|..+..+..-
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc
Confidence 34567889999999999988665 344445667778899999999999999999999985 2244445555555422
Q ss_pred --cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHH-HHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHH
Q 037620 93 --AKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS-EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDA 169 (330)
Q Consensus 93 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (330)
..+.+...++|+++...- |...+...+.-.+.....+. .+..++..+...|+| .+|+.+-..|.......-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 235788889999887664 54444444443344333343 455666777888864 3566666667655555555
Q ss_pred HHHHHHHHHc----C----------CCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh
Q 037620 170 YRMMDEMRKC----G----------IGPNT--RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCY 233 (330)
Q Consensus 170 ~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (330)
..++...... + -+|+. +++.-+.+.|...|++++|+.++++.... .+-.+..|..-.+.+-.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh 240 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHH
Confidence 6666655432 1 12343 35566788889999999999999998873 22235678888899999
Q ss_pred CCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhH--------HHHHHHHHhcC
Q 037620 234 NAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLF--------SNLKQALRDEG 305 (330)
Q Consensus 234 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~g 305 (330)
.|++.+|.+.++...+.+.. |...-+..+..+.+.|+.++|.+++......+..|....+ .....+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998776 7777777888999999999999999988766544433222 34567899999
Q ss_pred chHHHHHHHHHHHhc
Q 037620 306 MEETAVVLAQKIDKL 320 (330)
Q Consensus 306 ~~~~a~~~~~~~~~~ 320 (330)
++..|.+.+..+.+.
T Consensus 320 ~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 320 DYGLALKRFHAVLKH 334 (517)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999888877653
No 48
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.61 E-value=5.6e-11 Score=98.16 Aligned_cols=264 Identities=10% Similarity=0.065 Sum_probs=154.4
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 037620 11 PDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAH 90 (330)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (330)
.+|+.-.+.|.+.+.++-|..+|...++. .+.+...|......--..|..+....+|+++... .+-....|......+
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEK 594 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHH
Confidence 34555666666666666677777666663 3445556666655555566666666677666665 233445555555566
Q ss_pred hccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHH
Q 037620 91 CSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAY 170 (330)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (330)
-..|+...|..++....+.+ +-+...|...+..-..+.+++.|..+|.+.... .|+...|.--+..-.-.+..++|.
T Consensus 595 w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHH
Confidence 66677777777777766665 446666666666667777777777777666654 455566655555555566667777
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 037620 171 RMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR 250 (330)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 250 (330)
+++++..+. ++.-...|..+.+.+-+.++.+.|...|..-.+ ..+-....|..|...-.+.|.+-+|..++++..-.
T Consensus 672 rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 672 RLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 776666554 222234455555555566666666665555443 22233334445555445555555555555555554
Q ss_pred CCCccHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 037620 251 GVLPVMHMYSTLINSLCHEDKLDDACKYFQEML 283 (330)
Q Consensus 251 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (330)
++. +...|-..|+.-.+.|+.+.|..++.+.+
T Consensus 749 NPk-~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 749 NPK-NALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred CCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444 45555555555555555555555544443
No 49
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.60 E-value=4e-13 Score=101.62 Aligned_cols=229 Identities=9% Similarity=0.015 Sum_probs=178.2
Q ss_pred HHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhcc
Q 037620 49 TILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSE 128 (330)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (330)
+.+..+|.+.|-+.+|.+.|+..++. .|-+.||..|-..|.+..+++.|+.++.+-.+.- |-++.......+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 56778888888888888888888776 5667777778888888888888888888877663 44555555667788888
Q ss_pred CcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 037620 129 KRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVF 208 (330)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (330)
++.++|.++++...+.. +.++.....+...|.-.++++.|+..++++.+.|+. ++..|+.+.-+|.-.++++-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 88888888888887763 456667777777788888888888888888888875 7778888888888888888888888
Q ss_pred HHhhcCCCCCCc--hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 209 KRMSRKPGTEPT--VSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 209 ~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
.+... .-..|+ ..+|..+.......|++..|.+.|+-....+.. +...++.|.-.-.+.|++++|..+++....
T Consensus 382 ~RAls-tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 382 QRALS-TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHh-hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 87765 222232 346777777778888888888888888776655 667788888777888888888888887764
No 50
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.60 E-value=1.5e-11 Score=104.78 Aligned_cols=270 Identities=13% Similarity=0.107 Sum_probs=213.8
Q ss_pred HHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccC
Q 037620 50 ILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEK 129 (330)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (330)
.........|+.++|.+++.+.++.. +.+...|..|...|-..|+.+++...+-.....+ |.|...|..+.....+.|
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcc
Confidence 33344445599999999999999985 5588999999999999999999998886666555 778899999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHH----HHHHHHHHHHHcCCHHHHH
Q 037620 130 RLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTR----TYDIVLHHLIKAGRTEEAY 205 (330)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~ 205 (330)
+++.|.-+|.++++.. +++...+---...|-+.|+...|...+.++.....+.|.. ....+++.+...++-+.|.
T Consensus 222 ~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999985 5566666666788999999999999999998864432322 3334566777788889999
Q ss_pred HHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC---------------------------CCc----
Q 037620 206 SVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG---------------------------VLP---- 254 (330)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~---- 254 (330)
+.++......+...+...++.++..+.+...++.|......+.... ..+
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 9998877655556666677888888888888888877776655410 000
Q ss_pred --------------------------------cHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 037620 255 --------------------------------VMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALR 302 (330)
Q Consensus 255 --------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 302 (330)
+...|..+..++...|++.+|+.++..+.......+...|..+.++|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 134466677888889999999999999987655566778999999999
Q ss_pred hcCchHHHHHHHHHHHhcCC
Q 037620 303 DEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 303 ~~g~~~~a~~~~~~~~~~~~ 322 (330)
..|.+++|.+.++++....+
T Consensus 461 ~l~e~e~A~e~y~kvl~~~p 480 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILAP 480 (895)
T ss_pred HHhhHHHHHHHHHHHHhcCC
Confidence 99999999999999887654
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.1e-11 Score=98.78 Aligned_cols=219 Identities=12% Similarity=0.113 Sum_probs=161.2
Q ss_pred CcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHH
Q 037620 94 KRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMM 173 (330)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (330)
|+.-.|..-|+..+... +.+...|-.+..+|....+.++..+.|....+.+ +-++.+|..-.+.+.-.+++++|..-|
T Consensus 340 g~~~~a~~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred CCchhhhhhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 44555555566555554 3333346667778888888888888888888775 457778888888888888899999888
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 037620 174 DEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL 253 (330)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 253 (330)
++.+.... .+...|..+..+..+.++++++...|++..+ ..+-.+..|+.....+...++++.|.+.|+..++....
T Consensus 418 ~Kai~L~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 418 QKAISLDP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHhhcCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 88877532 2556777777777888899999999999887 45556678888889999999999999999988765322
Q ss_pred -----cc--HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHh
Q 037620 254 -----PV--MHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 319 (330)
Q Consensus 254 -----~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (330)
.+ +.+--.++..- -.+++..|..++++..+.+ +-....+..|...-.+.|+.++|+++|++...
T Consensus 495 ~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 12222222222 3488999999999998765 23456788899999999999999999987643
No 52
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.60 E-value=5e-12 Score=100.09 Aligned_cols=280 Identities=13% Similarity=0.120 Sum_probs=208.5
Q ss_pred HHHHccCChHHHHHHHHHHhhCCCCCChHHHHHH--HHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCc
Q 037620 18 DTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTIL--LEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKR 95 (330)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 95 (330)
..+.++|+++.|+++++-+.+.....-...-+.| +..+....++..|.+.-+...... .-+......-.+.....|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 3477899999999999888775433222223322 222222346777777776666442 3344444444445556799
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHH
Q 037620 96 YDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDE 175 (330)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (330)
+++|.+.|++....+..-....|+ +.-.+-..|++++|+++|-++... +..+..+...+...|....+..+|++++.+
T Consensus 506 ~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 999999999998766333334444 344677889999999999887654 234677788888999999999999999987
Q ss_pred HHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCcc
Q 037620 176 MRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPV 255 (330)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 255 (330)
.... ++.|+..++.|...|-+.|+-..|++.+-.--+ -.+-+..+...|...|....-+++++..|++..- +.|+
T Consensus 584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~ 658 (840)
T KOG2003|consen 584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPN 658 (840)
T ss_pred hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCcc
Confidence 7654 566888999999999999999999988765543 3556788889999999999999999999998643 5789
Q ss_pred HHHHHHHHH-HHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCc
Q 037620 256 MHMYSTLIN-SLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGM 306 (330)
Q Consensus 256 ~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 306 (330)
..-|..++. ++.+.|++.+|..+++.... .++.+...+..|++.+...|-
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccc
Confidence 999998876 55678999999999999865 456788888888888877663
No 53
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.59 E-value=1.8e-13 Score=115.88 Aligned_cols=250 Identities=12% Similarity=0.145 Sum_probs=163.1
Q ss_pred CCCCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCCh
Q 037620 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDV 80 (330)
Q Consensus 1 m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (330)
|+..|+.|+..+|.++|..|+..|+.+.|- +|..|.-...+.+...++.++.+....++.+.+. .|..
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 356799999999999999999999999998 9999998888889999999999999999887776 6788
Q ss_pred HHHHHHHHHHhccCcHHH---HHHHHHHH----HhcCCCCChHHHHHH--------------HHHHhccCcHHHHHHHHH
Q 037620 81 VSYGIMINAHCSAKRYDE---AVELFREM----EATNCKPSPHIFCTL--------------INGLGSEKRLSEALQFFG 139 (330)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~---a~~~~~~~----~~~~~~~~~~~~~~l--------------~~~~~~~~~~~~a~~~~~ 139 (330)
.+|..|+.+|...||... ..+.+..+ ...|+-.....+-.. +....-.|-++.+++++.
T Consensus 84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998654 22222222 122221111111111 112222344444444444
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCC
Q 037620 140 QSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEP 219 (330)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 219 (330)
.+...... . .+..+++-+... ..-..++........-.|++.+|..++.+-..+|+.+.|..++..|.+ .|.+.
T Consensus 164 ~~Pvsa~~-~--p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke-~gfpi 237 (1088)
T KOG4318|consen 164 KVPVSAWN-A--PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE-KGFPI 237 (1088)
T ss_pred hCCccccc-c--hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH-cCCCc
Confidence 33322111 0 111112222222 222223332222211147888888888888888888888888888887 67777
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCC
Q 037620 220 TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDK 271 (330)
Q Consensus 220 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 271 (330)
+..-|-.|+-+ .++...+..+++-|.+.|+.|+..|+...+..+...|.
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 77766666643 77777788888888888888888888877777766443
No 54
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.59 E-value=3.9e-11 Score=99.08 Aligned_cols=304 Identities=11% Similarity=0.038 Sum_probs=162.7
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINA 89 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (330)
...|......=-..|..+....+|.+.... +|-....|-....-+-..|+...|..++....+... -+...|...+..
T Consensus 550 ~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKl 627 (913)
T KOG0495|consen 550 KSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKL 627 (913)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHH
Confidence 334444444444445555555555555542 233333444444444445555555555555554432 244455555555
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHH
Q 037620 90 HCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDA 169 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (330)
.....++++|..+|.+.... .|+..+|..-+..-.-.++.++|.+++++..+. ++.-...|..+.+.+-+.++.+.|
T Consensus 628 e~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~a 704 (913)
T KOG0495|consen 628 EFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMA 704 (913)
T ss_pred hhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHH
Confidence 55555555555555554443 244444444444444445555555555555444 222233444444555555555555
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 037620 170 YRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKA 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 249 (330)
...|..-.+. ++-.+..|..+...--+.|++-.|..++++..- ..+-+...|...|++-.+.|..+.|..+..+..+
T Consensus 705 R~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarl--kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 705 REAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL--KNPKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh--cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5544443332 222333444444444444455555555554433 2233444455555555555555555544443332
Q ss_pred CC-----------------------------CCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 037620 250 RG-----------------------------VLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA 300 (330)
Q Consensus 250 ~~-----------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 300 (330)
.- ..-|+.+...+...+.....++.|.+.|.+.++.+ +.+..+|..+...
T Consensus 782 ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykf 860 (913)
T KOG0495|consen 782 ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKF 860 (913)
T ss_pred hCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHH
Confidence 21 12255667777788888889999999999999766 4567888888899
Q ss_pred HHhcCchHHHHHHHHHHHhcCC
Q 037620 301 LRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 301 ~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
+.+.|.-++-.+++.......+
T Consensus 861 el~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 861 ELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred HHHhCCHHHHHHHHHHHhccCC
Confidence 9999988888888877665443
No 55
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.57 E-value=1.3e-11 Score=105.96 Aligned_cols=308 Identities=9% Similarity=0.032 Sum_probs=201.7
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHh----hCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhC---CCCCCh-
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMK----KRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDD---GFEPDV- 80 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~- 80 (330)
|...|-.+...+-. ++...++.+|.... ..+-++.+...|.+...+...|++.+|...|...... ...++.
T Consensus 413 d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~ 491 (1018)
T KOG2002|consen 413 DSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG 491 (1018)
T ss_pred cHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc
Confidence 44455555544433 33333355554433 2344456667777777777777777777777776654 112222
Q ss_pred -----HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHH
Q 037620 81 -----VSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNA 155 (330)
Q Consensus 81 -----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (330)
.+-..+..+.-..++.+.|.+.|..+.... |.-...|..++.+....++..+|...+....... ..++..++.
T Consensus 492 ~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl 569 (1018)
T KOG2002|consen 492 KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSL 569 (1018)
T ss_pred ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHH
Confidence 222334555555667777777777777664 4445555555544445566777777777776653 446666666
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHH------------cCCHHHHHHHHHHhhcCCCCCCchH
Q 037620 156 VVGAYCWSMRINDAYRMMDEMRKCGI-GPNTRTYDIVLHHLIK------------AGRTEEAYSVFKRMSRKPGTEPTVS 222 (330)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~ 222 (330)
+...+.+...+..|..-|+.+.+.-. .+|+.+..+|...|.. .+..++|+++|.++.+ ..+-|..
T Consensus 570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~y 647 (1018)
T KOG2002|consen 570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMY 647 (1018)
T ss_pred HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhh
Confidence 77677777777777776666554322 2455555556554432 2456778888888776 3445666
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhc-CCCCChhhHHHHHHHH
Q 037620 223 TYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDI-GIRPPGQLFSNLKQAL 301 (330)
Q Consensus 223 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 301 (330)
.-+-+.-.++..|++..|..+|....+.... ...+|-.+..+|...|++..|+++|+..... ....+......|.+++
T Consensus 648 AANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~ 726 (1018)
T KOG2002|consen 648 AANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAW 726 (1018)
T ss_pred hccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 6677777788889999999999888876442 4457888888999999999999999877653 4455677888888999
Q ss_pred HhcCchHHHHHHHHHHHhcCC
Q 037620 302 RDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 302 ~~~g~~~~a~~~~~~~~~~~~ 322 (330)
.+.|.+.+|.+.+.......+
T Consensus 727 y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 727 YEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHhhhHHHHHHHHHHHHHhCC
Confidence 999999988888877665544
No 56
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=1.2e-12 Score=99.14 Aligned_cols=234 Identities=10% Similarity=0.060 Sum_probs=198.3
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 037620 11 PDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAH 90 (330)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (330)
..-+.+.++|.+.|.+.+|.+.|+..++. .|-+.||..|-..|.+..++..|+.++.+-.+. .+-++....-+.+.+
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHH
Confidence 33467889999999999999999988775 578889999999999999999999999998876 333444445577888
Q ss_pred hccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHH
Q 037620 91 CSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAY 170 (330)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (330)
-..++.++|.++|+...+.. +.+......+...|.-.++++.|+.++.++.+.|+. ++..|..+.-+|.-.++++-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 88899999999999999886 677888888888899999999999999999999964 7889999999999999999999
Q ss_pred HHHHHHHHcCCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 037620 171 RMMDEMRKCGIGPN--TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMK 248 (330)
Q Consensus 171 ~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 248 (330)
..|++....--.|+ ...|-.+-......|++..|.+.|+-... ....+...++.|.-.-.+.|++++|..++....
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 99998876433333 45788888888899999999999998875 344567789999988899999999999999887
Q ss_pred hCC
Q 037620 249 ARG 251 (330)
Q Consensus 249 ~~~ 251 (330)
...
T Consensus 457 s~~ 459 (478)
T KOG1129|consen 457 SVM 459 (478)
T ss_pred hhC
Confidence 653
No 57
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=1.4e-11 Score=97.52 Aligned_cols=260 Identities=8% Similarity=0.028 Sum_probs=193.2
Q ss_pred HhhccChHHHHHHHHHHHhCCCCCChHHHHHH--HHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHH
Q 037620 55 WGQQKNLLSMNEVYREMKDDGFEPDVVSYGIM--INAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132 (330)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (330)
+.+.|+++.|++++.-+.+..-+.-...-+.| +..+....++..|.+.-+.....+ .-++.....-.+.....|+++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHH
Confidence 56788888898888887765322222222222 222223446777777777766554 445555555555667789999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 037620 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMS 212 (330)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (330)
+|.+.+.+....... .....-.+.-.+-..|+.++|++.|-++... +..+..++..+...|-...++..|++++.+..
T Consensus 508 ka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 508 KAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 999999999877532 2333333445677889999999999887653 23467788888899999999999999998875
Q ss_pred cCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChh
Q 037620 213 RKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQ 292 (330)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 292 (330)
. -++.|+.++..|...|-+.|+-.+|.+.+-+--.. ++.|..+...|...|....-+++++.+|++.. -+.|+..
T Consensus 586 s--lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~ 660 (840)
T KOG2003|consen 586 S--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQS 660 (840)
T ss_pred c--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHH
Confidence 4 46667888999999999999999999887654333 45588899999999999999999999999886 4689999
Q ss_pred hHHHHHHH-HHhcCchHHHHHHHHHHHhcCC
Q 037620 293 LFSNLKQA-LRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 293 ~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
-|..++.. +.+.|++.+|..+++++..+-+
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 99987765 5689999999999999876543
No 58
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.51 E-value=1.6e-10 Score=96.86 Aligned_cols=265 Identities=12% Similarity=0.130 Sum_probs=190.7
Q ss_pred HHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc---
Q 037620 51 LLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGS--- 127 (330)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 127 (330)
....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.+ |.+..-|..+..+..-
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc
Confidence 345567899999999999886554 44345666778899999999999999999999998 5666666666665522
Q ss_pred --cCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCh-hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHH
Q 037620 128 --EKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRI-NDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEA 204 (330)
Q Consensus 128 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 204 (330)
..+.+...++++++... -|.......+.-.+.....+ ..+..++..+...|+++ +|..+-..|......+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence 23567778888888766 24444444333333332233 34556667777888653 566666666655555555
Q ss_pred HHHHHHhhcC----C---------CCCCchH--HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcc
Q 037620 205 YSVFKRMSRK----P---------GTEPTVS--TYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHE 269 (330)
Q Consensus 205 ~~~~~~~~~~----~---------~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 269 (330)
..++...... . .-+|+.. ++.-+.+.|-..|++++|++++++.+++.+. .+..|..-.+.+-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHC
Confidence 5555554321 0 1234442 4466678889999999999999999998544 467888889999999
Q ss_pred CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCCC
Q 037620 270 DKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTP 324 (330)
Q Consensus 270 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 324 (330)
|++.+|...++.....+. -|...-+..+..+.++|++++|.+++..+.+.+..|
T Consensus 242 G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred CCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 999999999999998763 466677778888999999999999999998777644
No 59
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.50 E-value=3.6e-10 Score=97.41 Aligned_cols=306 Identities=12% Similarity=0.045 Sum_probs=218.6
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCC--CCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCCh--HH
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRF--DPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDV--VS 82 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 82 (330)
+-|+.+.+.|...|.-.|+++.++.+...+..... +.-..+|-.+.++|...|++++|...|.+..+.. ++. ..
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~ 344 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLP 344 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCcccc
Confidence 34677888899999999999999999888877421 1224568888899999999999999998887763 333 34
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccC----cHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 037620 83 YGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEK----RLSEALQFFGQSKKRGFEPEAPTYNAVVG 158 (330)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (330)
+.-+...+...|+.+.+...|+.+.... |.+..+...|...|...+ ..+.|..++.+..+.- +.|...|-.+..
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laq 422 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQ 422 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHH
Confidence 4557788999999999999999998875 677788888887777765 4567777777776663 456777777777
Q ss_pred HHHhhCChhHHHHHHHHH----HHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC--CC------CchHHHHH
Q 037620 159 AYCWSMRINDAYRMMDEM----RKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPG--TE------PTVSTYEI 226 (330)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~------~~~~~~~~ 226 (330)
.+.... +..++..+... ...+-.+.+...|.+...+...|++++|...|.....+.. .. ++..+-..
T Consensus 423 l~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 423 LLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 665544 33336666544 3445556778899999999999999999999988765311 12 22333445
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCc
Q 037620 227 VVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGM 306 (330)
Q Consensus 227 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 306 (330)
+.......++.+.|.+.|..+.+..+. -...|.-++......+...+|..+++..++.+ ..++..+..+...+.+..+
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhh
Confidence 677778888999999999999876432 23344444433334577889999999988744 4566666667777887777
Q ss_pred hHHHHHHHHHHHh
Q 037620 307 EETAVVLAQKIDK 319 (330)
Q Consensus 307 ~~~a~~~~~~~~~ 319 (330)
+..|.+-++.+.+
T Consensus 580 ~~~a~k~f~~i~~ 592 (1018)
T KOG2002|consen 580 WKPAKKKFETILK 592 (1018)
T ss_pred hcccccHHHHHHh
Confidence 7777775554443
No 60
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.49 E-value=1.3e-10 Score=83.99 Aligned_cols=193 Identities=13% Similarity=0.003 Sum_probs=92.8
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC
Q 037620 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGR 200 (330)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (330)
|.-.|...|+...|..-+++..+.. +.+..++..+...|.+.|..+.|.+.|++...... -+..+.|....-+|..|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHHhCCC
Confidence 3344455555555555555554443 22334444444455555555555555555444321 133344444444455555
Q ss_pred HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHH
Q 037620 201 TEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQ 280 (330)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 280 (330)
+++|...|++....+.......+|..+.-+..+.|+.+.|...|++..+.... .+.+...+.......|++..|..+++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHH
Confidence 55555555555444433333445555555555555555555555555544332 23344444555555555555555555
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHH
Q 037620 281 EMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKI 317 (330)
Q Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 317 (330)
+....+ .++...+...++.-.+.|+.+.+.++=..+
T Consensus 198 ~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 198 RYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 554433 245555555555555555555544444333
No 61
>PF13041 PPR_2: PPR repeat family
Probab=99.48 E-value=1.2e-13 Score=77.57 Aligned_cols=49 Identities=37% Similarity=0.683 Sum_probs=29.0
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHh
Q 037620 8 QELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWG 56 (330)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 56 (330)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5555566666666666666666666666655555666666666555554
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.47 E-value=1.1e-10 Score=96.90 Aligned_cols=239 Identities=15% Similarity=0.118 Sum_probs=175.7
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhc-----C-CCCCh-HHHHHHHHHHhccCcHHHHHHHHHHHHhc-----C--
Q 037620 80 VVSYGIMINAHCSAKRYDEAVELFREMEAT-----N-CKPSP-HIFCTLINGLGSEKRLSEALQFFGQSKKR-----G-- 145 (330)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-- 145 (330)
..+...+...|...|+++.|+.+++...+. | ..|.. ...+.+...|...+++++|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 455666889999999999999999987764 1 12222 33344778899999999999999988653 2
Q ss_pred CCCChhhHHHHHHHHHhhCChhHHHHHHHHHHH---c--CC-CCc-HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC--
Q 037620 146 FEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRK---C--GI-GPN-TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPG-- 216 (330)
Q Consensus 146 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~--~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 216 (330)
.+.-..+++.|...|.+.|++++|...+++..+ . +. .|. ...++.+...+...+++++|..+++...+...
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 122345677888899999999999888887643 1 11 122 23466677788889999999998887654111
Q ss_pred CCC----chHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----CC--Cc-cHHHHHHHHHHHhccCChhHHHHHHHHHHh-
Q 037620 217 TEP----TVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR----GV--LP-VMHMYSTLINSLCHEDKLDDACKYFQEMLD- 284 (330)
Q Consensus 217 ~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 284 (330)
..+ -..+++.|...|...|++.+|+++++.++.. +- .+ ....++.+...|.+.+++.+|..+|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 111 2357899999999999999999999987653 11 11 234678888999999999999999887653
Q ss_pred ---cCC--CCChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 037620 285 ---IGI--RPPGQLFSNLKQALRDEGMEETAVVLAQKID 318 (330)
Q Consensus 285 ---~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (330)
.|. +....+|..|...|.+.|++++|.++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 221 2234578899999999999999999998876
No 63
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.47 E-value=2.4e-10 Score=90.68 Aligned_cols=227 Identities=12% Similarity=-0.028 Sum_probs=154.9
Q ss_pred ccChHHHHHHHHHHHhCC-CCC--ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHH
Q 037620 58 QKNLLSMNEVYREMKDDG-FEP--DVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEA 134 (330)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 134 (330)
.+..+.++.-+.+++... ..| ....|..+...+...|+.++|...|++..+.. |.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 345677777777777542 122 23557777888889999999999999988876 67788999999999999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 037620 135 LQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRK 214 (330)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (330)
...|++..+.. +.+..++..+..++...|++++|...++...+.. |+..........+...+++++|...+.+...
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~- 193 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE- 193 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh-
Confidence 99999998874 3356677888888888999999999999988754 3332222222233456789999999976553
Q ss_pred CCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC---CC--C-ccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC
Q 037620 215 PGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR---GV--L-PVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIR 288 (330)
Q Consensus 215 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 288 (330)
...|+...+ .+.. ...|+...+ ..+..+.+. .+ . .....|..+...+.+.|++++|+..|++..+.+ +
T Consensus 194 -~~~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~ 267 (296)
T PRK11189 194 -KLDKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-V 267 (296)
T ss_pred -hCCccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 223332222 2222 334555443 244444321 11 1 123578888999999999999999999998765 3
Q ss_pred CChhhHH
Q 037620 289 PPGQLFS 295 (330)
Q Consensus 289 ~~~~~~~ 295 (330)
|+..-+.
T Consensus 268 ~~~~e~~ 274 (296)
T PRK11189 268 YNFVEHR 274 (296)
T ss_pred chHHHHH
Confidence 4444333
No 64
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.46 E-value=4.1e-10 Score=89.36 Aligned_cols=222 Identities=10% Similarity=0.002 Sum_probs=161.3
Q ss_pred cCChHHHHHHHHHHhhCC-CCCC--hHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHH
Q 037620 23 SRHVERAQEVFDKMKKRR-FDPD--IKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEA 99 (330)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 99 (330)
.+..+.++.-+..++... ..|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 345567788888877632 2222 3567788888999999999999999999885 34788999999999999999999
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHc
Q 037620 100 VELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179 (330)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (330)
...|++..+.. |.+..++..+..++...|++++|.+.++...+.. |+..........+...+++++|...+......
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999999876 6677888999999999999999999999998874 43332222233345567899999999776543
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCC-----chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 037620 180 GIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEP-----TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL 253 (330)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 253 (330)
. .++...+ . ......|+...+ ..+..+.+.....+ ....|..+...+...|++++|...|++..+.++.
T Consensus 195 ~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 195 L-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred C-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 2 3332222 2 233345665544 34444443111111 2357889999999999999999999999987644
No 65
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.1e-09 Score=85.84 Aligned_cols=309 Identities=12% Similarity=0.055 Sum_probs=211.5
Q ss_pred CCCChhhHHHHHHHHH--ccCChHHHHHHHHHHhh-CCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHH
Q 037620 6 LKQELPDFNRLIDTLC--KSRHVERAQEVFDKMKK-RRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVS 82 (330)
Q Consensus 6 ~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (330)
++|+..+...-+.+++ ..++...|...+-.+.. ..++-|+.....+...+...|+.++|+..|++....+ +-+...
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~ 268 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEA 268 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhh
Confidence 3444444444444433 33444455554444333 2356678888889999999999999999999887653 113333
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 037620 83 YGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCW 162 (330)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (330)
.......+.+.|+.+....+...+.... .-+...|..-+......++++.|+.+-++.++.. +.+...+-.-...+..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHh
Confidence 3344455667788888888777776543 3444455555566667788899999888888774 3455566666677788
Q ss_pred hCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHH-H-HHHhCCCHHHH
Q 037620 163 SMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVV-R-MFCYNAQVDMA 240 (330)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~~~~a 240 (330)
.+++++|.-.|+..+... +-+...|..|+.+|...|.+.+|...-....+ -.+.+..+.+.+. . .+....--++|
T Consensus 347 ~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKA 423 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKA 423 (564)
T ss_pred ccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHH
Confidence 899999998888877642 23678899999999999999998877766554 2333455544442 1 22233345678
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhc
Q 037620 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKL 320 (330)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (330)
.++++......+. -....+.+...+...|..++++.++++.+.. .||......|.+.+...+.+.+|...+......
T Consensus 424 Kkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 424 KKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 8888876665433 3456677788888899999999999988753 688888888888888888888888888877665
Q ss_pred CCC
Q 037620 321 RKT 323 (330)
Q Consensus 321 ~~~ 323 (330)
++.
T Consensus 501 dP~ 503 (564)
T KOG1174|consen 501 DPK 503 (564)
T ss_pred Ccc
Confidence 543
No 66
>PF13041 PPR_2: PPR repeat family
Probab=99.46 E-value=2.7e-13 Score=76.20 Aligned_cols=49 Identities=33% Similarity=0.754 Sum_probs=31.5
Q ss_pred CChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHh
Q 037620 43 PDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHC 91 (330)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 91 (330)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666666666666666666666666666666666666666666666654
No 67
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.46 E-value=2e-11 Score=103.85 Aligned_cols=257 Identities=12% Similarity=0.160 Sum_probs=177.3
Q ss_pred HHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcC
Q 037620 31 EVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATN 110 (330)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 110 (330)
.++-.+...|+.|+-.||..+|.-|+..|+.+.|- +|.-|.....+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34556667799999999999999999999999998 9999988888888999999999999998877765
Q ss_pred CCCChHHHHHHHHHHhccCcHHH---HHHHHHHHH----hcCCCCChhhH--------------HHHHHHHHhhCChhHH
Q 037620 111 CKPSPHIFCTLINGLGSEKRLSE---ALQFFGQSK----KRGFEPEAPTY--------------NAVVGAYCWSMRINDA 169 (330)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~~~--------------~~l~~~~~~~~~~~~a 169 (330)
.|.+.+|..|..+|...||... +.+.+..+. ..|+-.....+ ...+......|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 6888999999999999998654 333222221 22221111111 1112222233334444
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 037620 170 YRMMDEMRKCGIGPNTRTYDIVLHHLIKAGR-TEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMK 248 (330)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 248 (330)
.+++..+...... . ++..+++-+..... +++-....+... + .|+..+|..++.+...+|+.+.|..++.+|+
T Consensus 159 lkll~~~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cksl~---e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKSLV---E-APTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHhhCCccccc-c--hHHHHHHHhccCCchHHHHHHHHHHhh---c-CCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 4444333221110 1 11112333333222 333333333322 2 5889999999999999999999999999999
Q ss_pred hCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHH
Q 037620 249 ARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEET 309 (330)
Q Consensus 249 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 309 (330)
+.|++.+..-|..|+-+ .++...+..+++.|.+.|+.|+..|+...+..+.++|....
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~ 289 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKY 289 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhh
Confidence 99998888877777755 78888899999999999999999999988888887665433
No 68
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2.8e-10 Score=92.45 Aligned_cols=273 Identities=9% Similarity=-0.011 Sum_probs=216.6
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLIN 123 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (330)
+......-..-+...+++.+..++++.+.+.. ++....+..-|.++...|+..+-.-+=.++.+.- |..+.+|..+.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 34444445566777889999999999999874 6677777777889999999888888878888775 778899999999
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHH
Q 037620 124 GLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEE 203 (330)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (330)
-|...|...+|.++|.+....+ +.-...|-.+...|.-.+..++|+..+...-+.- +-..-.+.-+.--|.+.++.+.
T Consensus 321 YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHH
Confidence 9999999999999999987764 2345678899999999999999999988876631 1122223334445778999999
Q ss_pred HHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----CC-C-ccHHHHHHHHHHHhccCChhHHHH
Q 037620 204 AYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR----GV-L-PVMHMYSTLINSLCHEDKLDDACK 277 (330)
Q Consensus 204 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~-~~~~~~~~l~~~~~~~~~~~~a~~ 277 (330)
|..+|..... ..+-|+...+.+.-.....+.+.+|..+|+..... +. . .-..+++.|..+|.+.+.+++|+.
T Consensus 399 Ae~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 399 AEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999999875 34556677777777778889999999999887632 11 1 134568899999999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCC
Q 037620 278 YFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKT 323 (330)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (330)
.+++.+... +.+..++..+.-.|...|+++.|...+.+.....+.
T Consensus 477 ~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 477 YYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred HHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 999998765 568999999999999999999999999988766543
No 69
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=4e-09 Score=84.33 Aligned_cols=308 Identities=11% Similarity=0.093 Sum_probs=184.4
Q ss_pred CCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhC-CC-CCChHHH
Q 037620 6 LKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDD-GF-EPDVVSY 83 (330)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~ 83 (330)
..|+..+|++.|..=.+.+.++.|..+++...-. .|++.+|-.....=.+.|....+..+|+...+. |- ..+...+
T Consensus 170 w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lf 247 (677)
T KOG1915|consen 170 WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILF 247 (677)
T ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4677778888888777778888888888777653 477777777777667777777777777766654 10 1112223
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHhc-------------------------------------------CCCCChHHHHH
Q 037620 84 GIMINAHCSAKRYDEAVELFREMEAT-------------------------------------------NCKPSPHIFCT 120 (330)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~~~-------------------------------------------~~~~~~~~~~~ 120 (330)
.+....-.++..++.|.-+|+-.++. ..+.|-.+|--
T Consensus 248 vaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfd 327 (677)
T KOG1915|consen 248 VAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFD 327 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHH
Confidence 33333223333444444444333221 01344455555
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhcCCCCChh--hHHHHHHH--------HHhhCChhHHHHHHHHHHHcCCCCcHHHHHH
Q 037620 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAP--TYNAVVGA--------YCWSMRINDAYRMMDEMRKCGIGPNTRTYDI 190 (330)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (330)
.++.-...|+.+...++|++++.. ++|-.. .|.-.|-. -....+++.+.++++...+. ++...+||.-
T Consensus 328 ylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaK 405 (677)
T KOG1915|consen 328 YLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAK 405 (677)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHH
Confidence 555555566666666666666654 233111 11111111 11345666666666666652 3334444444
Q ss_pred HHHHH----HHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 037620 191 VLHHL----IKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSL 266 (330)
Q Consensus 191 l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 266 (330)
+--.| .+..+...|.+++.... |.-|...++...|..-.+.+.++.+..++++.++.++. |..+|......-
T Consensus 406 iWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE 481 (677)
T KOG1915|consen 406 IWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELE 481 (677)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHH
Confidence 33333 35566777777777654 45666777777777777888888888888888887665 667777777777
Q ss_pred hccCChhHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcC
Q 037620 267 CHEDKLDDACKYFQEMLDIG-IRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLR 321 (330)
Q Consensus 267 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (330)
...|+.+.|..+|+-+++.. +......|...+..=...|.+++|..+++.+....
T Consensus 482 ~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 482 TSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 77888888888888877532 11123344444554456788888888888776544
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.43 E-value=1.2e-10 Score=96.59 Aligned_cols=244 Identities=16% Similarity=0.185 Sum_probs=173.5
Q ss_pred CCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhC-----C-CCCChH-HHHHHHHHHhccCcHHHHHHHHHHHHhc---
Q 037620 40 RFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDD-----G-FEPDVV-SYGIMINAHCSAKRYDEAVELFREMEAT--- 109 (330)
Q Consensus 40 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 109 (330)
+.|.-..+...+...|...|+++.|+.++....+. | ..|... ..+.+...|...+++.+|..+|+++...
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 33434456666888888999999999888887664 2 123333 3344777888889999998888887642
Q ss_pred --C--CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc-----CC-CCCh-hhHHHHHHHHHhhCChhHHHHHHHHHHH
Q 037620 110 --N--CKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR-----GF-EPEA-PTYNAVVGAYCWSMRINDAYRMMDEMRK 178 (330)
Q Consensus 110 --~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (330)
| .+.-..+++.|...|.+.|++++|...+++..+. |. .|.+ ..++.+...+...+++++|..++....+
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 2 2334566777778899999999888887776432 11 2233 2356677778888999999988886543
Q ss_pred c---CCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC----C-CCCc-hHHHHHHHHHHHhCCCHHHHHHHHH
Q 037620 179 C---GIGPN----TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKP----G-TEPT-VSTYEIVVRMFCYNAQVDMAMRIWD 245 (330)
Q Consensus 179 ~---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 245 (330)
. -+.++ ..+++.|...|...|++++|.++++++.... + ..+. ...++.+...|.+.+++.+|.++|.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 1 12222 4688999999999999999999998876421 1 1222 4467888889999999999999887
Q ss_pred HHHh----CCCC--ccHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 037620 246 EMKA----RGVL--PVMHMYSTLINSLCHEDKLDDACKYFQEML 283 (330)
Q Consensus 246 ~~~~----~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (330)
+... .|+. -...+|..|...|.+.|+++.|.++.+...
T Consensus 434 ~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 434 EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 7543 2322 234678899999999999999999988776
No 71
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=1.6e-10 Score=92.31 Aligned_cols=224 Identities=12% Similarity=0.110 Sum_probs=182.8
Q ss_pred HhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHH
Q 037620 55 WGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEA 134 (330)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 134 (330)
+.-.|+.-.|..-|+..+..... +...|-.+...|....+.++..+.|.+..+.+ |.++.+|..-..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 44568889999999999987543 33447778889999999999999999999988 88899999999999999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 037620 135 LQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRK 214 (330)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (330)
..=|++.++.. +.+...|-.+..+..+.+++++++..|++.++. ++..+..|+.....+...++++.|.+.|+...+-
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99999999885 446667777777777889999999999999887 5557889999999999999999999999988752
Q ss_pred CCC------CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 215 PGT------EPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 215 ~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
... .+.+.+--.++. +.-.+++..|..++++..+.+++ ....|..|...-.+.|+.++|+++|++...
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 111 111111122222 22458999999999999998776 567899999999999999999999998864
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.42 E-value=8.5e-10 Score=79.86 Aligned_cols=199 Identities=12% Similarity=0.014 Sum_probs=151.6
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHh
Q 037620 47 SYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLG 126 (330)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (330)
+...|.-.|...|+...|..-+++.++.. +-+..+|..+...|.+.|+.+.|.+-|++..+.. |-+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 45556677888888888888888888875 3366778888888888888888888888888776 667788888888888
Q ss_pred ccCcHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 037620 127 SEKRLSEALQFFGQSKKRGFE-PEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAY 205 (330)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 205 (330)
..|++++|.+.|++......- --..+|..+.-+..+.|+++.|...|++..+.... ...+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 888888888888887765322 23457777887888888888888888888776432 4556777788888888888888
Q ss_pred HHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 037620 206 SVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR 250 (330)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 250 (330)
..++..... ..++....-..|+.-...|+.+.+-+.=..+...
T Consensus 194 ~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 888888763 3377777777777777888888777766666554
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.38 E-value=2.9e-08 Score=81.70 Aligned_cols=309 Identities=11% Similarity=-0.018 Sum_probs=191.8
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCC-CCCCh-HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHH--
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRR-FDPDI-KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGI-- 85 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 85 (330)
+..|..+...+...|+.+.+...+....+.. ..++. .........+...|++++|.+.+++..+.. +.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 3446666677777788888777777765532 11222 122223345677899999999999998873 334444442
Q ss_pred -HHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhC
Q 037620 86 -MINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSM 164 (330)
Q Consensus 86 -ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (330)
........+....+.+.+... ....+........+...+...|++++|.+.+++..+.. +.+...+..+...+...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 222222345555666665542 22223344555667778899999999999999999885 445677888899999999
Q ss_pred ChhHHHHHHHHHHHcCCC-CcH--HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHH-H--HHHHHHHhCCCHH
Q 037620 165 RINDAYRMMDEMRKCGIG-PNT--RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTY-E--IVVRMFCYNAQVD 238 (330)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~~~~~ 238 (330)
++++|...+++....... ++. ..|..+...+...|++++|..++++........+..... + .++..+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 999999999998775321 222 345567888999999999999999986422212222211 1 2333344444433
Q ss_pred HHHHH--H-HHHHhCCC-CccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC------C--ChhhHHHHHHHHHhcCc
Q 037620 239 MAMRI--W-DEMKARGV-LPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIR------P--PGQLFSNLKQALRDEGM 306 (330)
Q Consensus 239 ~a~~~--~-~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~--~~~~~~~l~~~~~~~g~ 306 (330)
.+.++ + ........ ............++...|+.+.|..+++.+...... . ..........++...|+
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 33333 2 11111100 111122235667788999999999999998753222 1 11122222334668999
Q ss_pred hHHHHHHHHHHHhcC
Q 037620 307 EETAVVLAQKIDKLR 321 (330)
Q Consensus 307 ~~~a~~~~~~~~~~~ 321 (330)
+++|.+.+.......
T Consensus 323 ~~~A~~~L~~al~~a 337 (355)
T cd05804 323 YATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998876543
No 74
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=3.5e-09 Score=83.17 Aligned_cols=271 Identities=10% Similarity=0.112 Sum_probs=208.9
Q ss_pred CCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHH
Q 037620 6 LKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGI 85 (330)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (330)
++-|++....+..++...|+.++|+..|+.....+ +-+..........+.+.|+.+....+...+.... .-+...|..
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 56678889999999999999999999999987642 1122233333344567889998888888887652 235555665
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCC
Q 037620 86 MINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMR 165 (330)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (330)
-+.......+++.|+.+-++.++.+ +.+...+-.-.+.+...++.++|.-.|....... +.+...|..|+.+|...|+
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhch
Confidence 6666677889999999999998876 6667777777788899999999999999998873 4578899999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCcHHHHHHHH-HHHH-HcCCHHHHHHHHHHhhcCCCCCCc-hHHHHHHHHHHHhCCCHHHHHH
Q 037620 166 INDAYRMMDEMRKCGIGPNTRTYDIVL-HHLI-KAGRTEEAYSVFKRMSRKPGTEPT-VSTYEIVVRMFCYNAQVDMAMR 242 (330)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~ 242 (330)
+.+|..+-+...+. ++.+..+...+. ..+. ...--++|..++++..+ ..|+ ....+.+...+...|..+.+..
T Consensus 384 ~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 384 FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHH
Confidence 99998887776553 333555555542 3332 23345788999988765 4444 3456778888999999999999
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 037620 243 IWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 286 (330)
+++..... .||....+.|.+.+...+.+++|++.|...+..+
T Consensus 460 LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 460 LLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 99987764 5788899999999999999999999999988654
No 75
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.35 E-value=4.9e-10 Score=87.73 Aligned_cols=251 Identities=12% Similarity=0.093 Sum_probs=167.5
Q ss_pred HHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHH
Q 037620 18 DTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYD 97 (330)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 97 (330)
+-+.-.|++..++.-.+ .....-..+......+.+++...|+.+.++ .++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 44556788888886665 322221223445566778888888877544 4444433 677777766666665545555
Q ss_pred HHHHHHHHHHhcCCC-CChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHH
Q 037620 98 EAVELFREMEATNCK-PSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEM 176 (330)
Q Consensus 98 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (330)
.++.-+++....... .+.........++...|++++|++++... .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666555554433323 23333334446678889999999888643 35667777889999999999999999999
Q ss_pred HHcCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 037620 177 RKCGIGPNTRTYDIVLHHLIK----AGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV 252 (330)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 252 (330)
.+.+ +..+...+..++.. .+.+.+|..+|+++.+ ...+++.+.+.+..+....|++++|.+++.+..+.+.
T Consensus 158 ~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 158 QQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred HhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 8753 33455556665543 2368999999999887 3557788888999999999999999999999887665
Q ss_pred CccHHHHHHHHHHHhccCCh-hHHHHHHHHHHhc
Q 037620 253 LPVMHMYSTLINSLCHEDKL-DDACKYFQEMLDI 285 (330)
Q Consensus 253 ~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 285 (330)
. ++.+...++.+....|+. +.+.+++.++...
T Consensus 233 ~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 N-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp C-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred C-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 5 677777788877888887 5677788887754
No 76
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.32 E-value=2.9e-10 Score=88.96 Aligned_cols=253 Identities=13% Similarity=0.089 Sum_probs=171.0
Q ss_pred HHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHH
Q 037620 53 EGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132 (330)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (330)
+-+.-.|++..++.-.+ ......+.+......+.+++...|+++.++ .++.... +|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 44556788988887666 333322223445556778898999877544 4444444 677777776766665545566
Q ss_pred HHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 037620 133 EALQFFGQSKKRGFEP-EAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRM 211 (330)
Q Consensus 133 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (330)
.+..-+.+.......+ +..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666665554443232 3333333345567789999999888643 35677778899999999999999999999
Q ss_pred hcCCCCCCchHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCC
Q 037620 212 SRKPGTEPTVSTYEIVVRMFCY----NAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGI 287 (330)
Q Consensus 212 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 287 (330)
.+ ...| .+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+..+.+
T Consensus 158 ~~---~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~- 231 (290)
T PF04733_consen 158 QQ---IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD- 231 (290)
T ss_dssp HC---CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--
T ss_pred Hh---cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-
Confidence 86 2333 344455555543 34699999999998765 55688899999999999999999999999998765
Q ss_pred CCChhhHHHHHHHHHhcCch-HHHHHHHHHHHhcCC
Q 037620 288 RPPGQLFSNLKQALRDEGME-ETAVVLAQKIDKLRK 322 (330)
Q Consensus 288 ~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~ 322 (330)
+-++.++..++-+....|+. +.+.+++.++....+
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 44677888888888888887 677888888876554
No 77
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=5.6e-08 Score=77.99 Aligned_cols=163 Identities=10% Similarity=0.043 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 037620 11 PDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAH 90 (330)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (330)
..|-..+.+=.++..+..|..++++.... +|.-...|...+.+=-..|++..|.++|+...+- .|+...|.+.+..-
T Consensus 108 tLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fE 184 (677)
T KOG1915|consen 108 TLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFE 184 (677)
T ss_pred hHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHH
Confidence 34444555555556666666666665552 2222234444444445567777777777777664 67888888888888
Q ss_pred hccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCC--CCChhhHHHHHHHHHhhCChhH
Q 037620 91 CSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGF--EPEAPTYNAVVGAYCWSMRIND 168 (330)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 168 (330)
.+.+.++.|..+|+...-. .|+...|-.....=.+.|+...+..+|+.+.+.-- ..+...+.++...-..+..++.
T Consensus 185 lRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ER 262 (677)
T KOG1915|consen 185 LRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYER 262 (677)
T ss_pred HHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887654 37777777777777778888888888877765410 0122334444444445666777
Q ss_pred HHHHHHHHHH
Q 037620 169 AYRMMDEMRK 178 (330)
Q Consensus 169 a~~~~~~~~~ 178 (330)
|.-+|.-..+
T Consensus 263 ar~iykyAld 272 (677)
T KOG1915|consen 263 ARFIYKYALD 272 (677)
T ss_pred HHHHHHHHHH
Confidence 7777765543
No 78
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.29 E-value=8.8e-08 Score=81.17 Aligned_cols=131 Identities=16% Similarity=0.082 Sum_probs=98.5
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCCh
Q 037620 193 HHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKL 272 (330)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 272 (330)
..+.+.++.++|...+.+... ..+.....|......+...|.+.+|.+.|......++. ++....++..++.+.|+.
T Consensus 658 ~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~ 734 (799)
T KOG4162|consen 658 DLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSP 734 (799)
T ss_pred HHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCc
Confidence 344455555666655555543 23334455566666677788888888888887776544 566788899999999988
Q ss_pred hHHHH--HHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCCCCCc
Q 037620 273 DDACK--YFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTPLVD 327 (330)
Q Consensus 273 ~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 327 (330)
.-|.. ++..++..+ +.+...|..+...+.+.|+.++|...|+.......+.++.
T Consensus 735 ~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 735 RLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVL 790 (799)
T ss_pred chHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcc
Confidence 88877 999999877 5688999999999999999999999999888777665554
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.27 E-value=1.3e-07 Score=77.84 Aligned_cols=275 Identities=8% Similarity=-0.077 Sum_probs=171.4
Q ss_pred hHHHHHHHHHHhhccChHHHHHHHHHHHhCCC-CCCh-HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHH--
Q 037620 45 IKSYTILLEGWGQQKNLLSMNEVYREMKDDGF-EPDV-VSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT-- 120 (330)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 120 (330)
...|..+...+...|+.+.+.+.+....+... .++. .........+...|++++|.+++++..+.. |.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 45566667777777888887777776655421 1222 122223445677899999999999998875 555555542
Q ss_pred -HHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcC
Q 037620 121 -LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAG 199 (330)
Q Consensus 121 -l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (330)
........+....+.+.+...... .+........+...+...|++++|...+++..+.. +.+...+..+...+...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 222222345555555555542111 12223344456678889999999999999999875 335677888899999999
Q ss_pred CHHHHHHHHHHhhcCCCCCCch--HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-CccHHHH-H--HHHHHHhccCChh
Q 037620 200 RTEEAYSVFKRMSRKPGTEPTV--STYEIVVRMFCYNAQVDMAMRIWDEMKARGV-LPVMHMY-S--TLINSLCHEDKLD 273 (330)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~ 273 (330)
++++|...+++........|+. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 9999999999987632222332 3455788889999999999999999865432 1122111 1 2333334445433
Q ss_pred HHHHH--HHHHHhcCCC--CChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 274 DACKY--FQEMLDIGIR--PPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 274 ~a~~~--~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
.+.++ +......... ...........++...|+.++|..+++.+.....
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~ 295 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRAS 295 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 33333 2111111111 1112222466678889999999999998876443
No 80
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=1.6e-08 Score=76.35 Aligned_cols=310 Identities=15% Similarity=0.134 Sum_probs=186.7
Q ss_pred CCCCCCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCCh
Q 037620 1 MDKFGLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDV 80 (330)
Q Consensus 1 m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (330)
|-..|+......+.+++..+.+..++++|++++....++. +.+......+..+|....++..|-..++++-.. .|..
T Consensus 1 M~~~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~ 77 (459)
T KOG4340|consen 1 MAGSGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPEL 77 (459)
T ss_pred CCcccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHH
Confidence 4456666666678899999999999999999998887753 447788889999999999999999999999876 4554
Q ss_pred HHHHH-HHHHHhccCcHHHHHHHHHHHHhcC-----------------------------C--CCChHHHHHHHHHHhcc
Q 037620 81 VSYGI-MINAHCSAKRYDEAVELFREMEATN-----------------------------C--KPSPHIFCTLINGLGSE 128 (330)
Q Consensus 81 ~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~-----------------------------~--~~~~~~~~~l~~~~~~~ 128 (330)
.-|.. -...+.+.+.+..|+++...|.... . ..+..+.+...-...+.
T Consensus 78 ~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 78 EQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeecc
Confidence 44432 2345556667777777666553310 0 01223333333344567
Q ss_pred CcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcH-------------H--------H
Q 037620 129 KRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNT-------------R--------T 187 (330)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~--------~ 187 (330)
|+++.|.+-|+...+-+--.....|+.-+ +..+.+++..|++...+++++|++..+ . .
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh 236 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLH 236 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHH
Confidence 77777777777766543333344565444 344567777788777777777764211 0 1
Q ss_pred HHHHHH-------HHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHH
Q 037620 188 YDIVLH-------HLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYS 260 (330)
Q Consensus 188 ~~~l~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 260 (330)
-+.++. .+.+.++++.|.+.+..|..+.....|+.|...+.-.- -.+++....+-+.-+.+.++- ...||.
T Consensus 237 ~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFA 314 (459)
T KOG4340|consen 237 QSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFA 314 (459)
T ss_pred HHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHH
Confidence 122222 23466777777777777766555566666665544221 223444444444555555443 356777
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCCC-CChhhHHHHHHHHHh-cCchHHHHHHHHHH
Q 037620 261 TLINSLCHEDKLDDACKYFQEMLDIGIR-PPGQLFSNLKQALRD-EGMEETAVVLAQKI 317 (330)
Q Consensus 261 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~ 317 (330)
.++-.||+..-++.|-.++.+-...... .+...|. ++.++.. .-..+++.+-++.+
T Consensus 315 NlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 315 NLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence 7777777777777777766543221111 1222222 3444443 33566666555544
No 81
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.23 E-value=2.8e-07 Score=76.76 Aligned_cols=95 Identities=14% Similarity=0.162 Sum_probs=65.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCcc-HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 037620 225 EIVVRMFCYNAQVDMAMRIWDEMKARGVLPV-MHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRD 303 (330)
Q Consensus 225 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 303 (330)
..++..+-..|+++.|...++..+++ .|+ +..|..-.+.+.+.|++++|..++++..+.+ .+|...-..-+.-..+
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLr 451 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLR 451 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHH
Confidence 34566677778888888888887765 333 3345455577778888888888888887655 3455444455566677
Q ss_pred cCchHHHHHHHHHHHhcCC
Q 037620 304 EGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 304 ~g~~~~a~~~~~~~~~~~~ 322 (330)
+++.++|.+++..+.+.|.
T Consensus 452 An~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 452 ANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred ccccHHHHHHHHHhhhccc
Confidence 7888888888877776664
No 82
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.20 E-value=5.5e-08 Score=87.43 Aligned_cols=244 Identities=11% Similarity=0.145 Sum_probs=186.5
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CCC---CChHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 037620 68 YREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEAT-NCK---PSPHIFCTLINGLGSEKRLSEALQFFGQSKK 143 (330)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (330)
|+++.... +-+...|-..+......++.++|.++.++.+.. ++. .....|.++++.-..-|.-+...++|+++.+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 34444432 446778889999999999999999999998753 211 1234677777777777888889999999988
Q ss_pred cCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHH
Q 037620 144 RGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVST 223 (330)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 223 (330)
.. ..-..|..|...|.+.+.+++|.++++.|.+. .......|...+..+.+.++-++|..++.+..+...-.-....
T Consensus 1526 yc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1526 YC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred hc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 73 23457889999999999999999999999886 3357789999999999999999999999998873222224555
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCh--hhHHHHHHHH
Q 037620 224 YEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPG--QLFSNLKQAL 301 (330)
Q Consensus 224 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~ 301 (330)
....+..-.+.|+.+++..+|+......++ -...|+.+++.-.++|+.+.+..+|++..+.++.|-. ..|...+..=
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence 566677778999999999999999877555 5678999999999999999999999999998877653 2444444443
Q ss_pred HhcCchHHHHHHHHH
Q 037620 302 RDEGMEETAVVLAQK 316 (330)
Q Consensus 302 ~~~g~~~~a~~~~~~ 316 (330)
...|+-+.++.+=.+
T Consensus 1682 k~~Gde~~vE~VKar 1696 (1710)
T KOG1070|consen 1682 KSHGDEKNVEYVKAR 1696 (1710)
T ss_pred HhcCchhhHHHHHHH
Confidence 455665554444333
No 83
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.16 E-value=3e-07 Score=76.60 Aligned_cols=309 Identities=15% Similarity=0.145 Sum_probs=206.4
Q ss_pred CCCChhh-HHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHH
Q 037620 6 LKQELPD-FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYG 84 (330)
Q Consensus 6 ~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (330)
++|-... |..++.+ ...+++...+.+.+.+++ +.+-...+.....-.+...|+.++|........+.++. +.++|.
T Consensus 3 l~~KE~~lF~~~lk~-yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwH 79 (700)
T KOG1156|consen 3 LSPKENALFRRALKC-YETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWH 79 (700)
T ss_pred CChHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHH
Confidence 3444444 4444544 467788888888888887 44445556655555566789999999999988887544 889999
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhC
Q 037620 85 IMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSM 164 (330)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (330)
.+.-.+....++++|++.|......+ +.|...+.-+.-.-++.++++..........+.. +.....|..+..++.-.|
T Consensus 80 v~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g 157 (700)
T KOG1156|consen 80 VLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLG 157 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHH
Confidence 99888888999999999999999887 7788888888878888999999888888887763 345667888888888899
Q ss_pred ChhHHHHHHHHHHHcC-CCCcHHHHHHHH------HHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCH
Q 037620 165 RINDAYRMMDEMRKCG-IGPNTRTYDIVL------HHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQV 237 (330)
Q Consensus 165 ~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (330)
+...|..+++...+.. -.|+...+.-.. ......|..+.|.+.+..... .+......-..-...+.+.+++
T Consensus 158 ~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~--~i~Dkla~~e~ka~l~~kl~~l 235 (700)
T KOG1156|consen 158 EYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK--QIVDKLAFEETKADLLMKLGQL 235 (700)
T ss_pred HHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh--HHHHHHHHhhhHHHHHHHHhhH
Confidence 9999999999988754 245555544332 344567888888887776543 1222222233445667889999
Q ss_pred HHHHHHHHHHHhCCCCccHHHHH-HHHHHHhccCChhHHH-HHHHHHHhcCCCCChhhHHHHHHHHH-hcCchHHHHHHH
Q 037620 238 DMAMRIWDEMKARGVLPVMHMYS-TLINSLCHEDKLDDAC-KYFQEMLDIGIRPPGQLFSNLKQALR-DEGMEETAVVLA 314 (330)
Q Consensus 238 ~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~ 314 (330)
++|..++..++..+ ||-..|. .+..++.+-.+.-+++ .+|....+. .|....-..+--... ...-.+..-+++
T Consensus 236 EeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL 311 (700)
T KOG1156|consen 236 EEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYL 311 (700)
T ss_pred HhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHH
Confidence 99999999999874 4444444 4444554333334444 555555432 222222222211111 122233444555
Q ss_pred HHHHhcCCCCC
Q 037620 315 QKIDKLRKTPL 325 (330)
Q Consensus 315 ~~~~~~~~~~~ 325 (330)
......|.++.
T Consensus 312 ~~~l~Kg~p~v 322 (700)
T KOG1156|consen 312 RPLLSKGVPSV 322 (700)
T ss_pred HHHhhcCCCch
Confidence 66666666554
No 84
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.15 E-value=7.4e-08 Score=85.28 Aligned_cols=235 Identities=10% Similarity=0.038 Sum_probs=111.1
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHH
Q 037620 8 QELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMI 87 (330)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (330)
.+...+..|+..+...+++++|.++.+...+.. |-....|-.+...+.+.++.+.+..+ .+..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~-------------- 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLID-------------- 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhh--------------
Confidence 356678888888888888888888888666631 22333444444456666665554444 2222
Q ss_pred HHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChh
Q 037620 88 NAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIN 167 (330)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (330)
......++..+..+...+... .-+..++..+..+|-+.|+.+++..+++++.+.. +.++.+.|.+...|... +++
T Consensus 92 -~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 92 -SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred -hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 122222222222222222221 1222344444555555555555555555555443 33444444454444444 555
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHH-----HHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHH
Q 037620 168 DAYRMMDEMRKCGIGPNTRTYDIVLHHL-----IKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMR 242 (330)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 242 (330)
+|..++.+....-+ +..-|+.+.... ....+.+.-..+.+.+....+..--..++..+-..|...++++++..
T Consensus 167 KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~ 244 (906)
T PRK14720 167 KAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY 244 (906)
T ss_pred HHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence 55444444333200 000000000000 00111222223333333322222233445555666777777777777
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHh
Q 037620 243 IWDEMKARGVLPVMHMYSTLINSLC 267 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~ 267 (330)
+++.+.+.... |.....-++.+|.
T Consensus 245 iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 245 ILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhcCCc-chhhHHHHHHHHH
Confidence 77777776555 5556666666665
No 85
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=9.4e-08 Score=74.00 Aligned_cols=100 Identities=11% Similarity=0.025 Sum_probs=75.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHH-HHHHHhccCChhHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHh
Q 037620 226 IVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYST-LINSLCHEDKLDDACKYFQEMLDIGIRPPG-QLFSNLKQALRD 303 (330)
Q Consensus 226 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~ 303 (330)
.+.++++..|.+.+|+++|-.+....++ |..+|.. |.++|.+.+.++.|+.++-++-. +.+. .....+..-|.+
T Consensus 398 N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk 473 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYK 473 (557)
T ss_pred HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHH
Confidence 4667778889999999999888766666 6666665 55799999999999888766532 2222 334445667889
Q ss_pred cCchHHHHHHHHHHHhcCCCCCCcCC
Q 037620 304 EGMEETAVVLAQKIDKLRKTPLVDRG 329 (330)
Q Consensus 304 ~g~~~~a~~~~~~~~~~~~~~~~~~~ 329 (330)
.+.+=-|.+.|+.+...+++|..+.|
T Consensus 474 ~~eFyyaaKAFd~lE~lDP~pEnWeG 499 (557)
T KOG3785|consen 474 ANEFYYAAKAFDELEILDPTPENWEG 499 (557)
T ss_pred HHHHHHHHHhhhHHHccCCCccccCC
Confidence 99999999999999999999977665
No 86
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=3.6e-08 Score=80.79 Aligned_cols=253 Identities=9% Similarity=0.035 Sum_probs=183.9
Q ss_pred HHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHH
Q 037620 54 GWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSE 133 (330)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (330)
-+.+.|++.+|.-.|+...+.+ +-+...|..|.......++-..|+..+++..+.. |.+..+.-.|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 3567888999999999998885 3478899999999999999999999999999887 7788888999999999999999
Q ss_pred HHHHHHHHHhcCCCC--------ChhhHHHHHHHHHhhCChhHHHHHHHHH-HHcCCCCcHHHHHHHHHHHHHcCCHHHH
Q 037620 134 ALQFFGQSKKRGFEP--------EAPTYNAVVGAYCWSMRINDAYRMMDEM-RKCGIGPNTRTYDIVLHHLIKAGRTEEA 204 (330)
Q Consensus 134 a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a 204 (330)
|+..++..+....+- +...-.. ..+.....+....++|-++ ...+..+|+.....|.-.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 999998886553110 0000000 1111122233344444444 4455446777888888888899999999
Q ss_pred HHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 205 YSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
.+.|+.... --+-|..+||-|...++...+.++|+.-|.+.++..+. -+.+...|.-+|...|.+++|.+.|-..+.
T Consensus 450 iDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999999986 23446778999999999999999999999999887544 234555677789999999999998877653
Q ss_pred ---c------CCCCChhhHHHHHHHHHhcCchHHHHHH
Q 037620 285 ---I------GIRPPGQLFSNLKQALRDEGMEETAVVL 313 (330)
Q Consensus 285 ---~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 313 (330)
. +..++...|..|-.++.-.++.+-+.+.
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 1 1122345677776677777776644433
No 87
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=1.3e-08 Score=83.28 Aligned_cols=227 Identities=12% Similarity=0.093 Sum_probs=176.4
Q ss_pred HHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChh
Q 037620 88 NAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIN 167 (330)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (330)
.-+.+.|++.+|.-.|+.....+ |-+...|..|.......++-..|+..+.+..+.. +.+....-.|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34567888999999999998887 7889999999999999999999999999999985 557778888889999999999
Q ss_pred HHHHHHHHHHHcCCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHH
Q 037620 168 DAYRMMDEMRKCGIGP--------NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDM 239 (330)
Q Consensus 168 ~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (330)
.|...++..+...++- +...-.. ..+.....+....++|-.+....+..+|+.+...|.-.|--.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 9999999886643110 0000000 11111222344455555555445656777788888888999999999
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 037620 240 AMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPP-GQLFSNLKQALRDEGMEETAVVLAQKID 318 (330)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (330)
|.+.|+..+...+. |...||.|...++...+.++|+..|++.++. .|+ .+....|.-+|...|.+++|.+.|-...
T Consensus 449 aiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999987655 7889999999999999999999999999965 565 4566678889999999999998887665
Q ss_pred hcC
Q 037620 319 KLR 321 (330)
Q Consensus 319 ~~~ 321 (330)
.+.
T Consensus 526 ~mq 528 (579)
T KOG1125|consen 526 SMQ 528 (579)
T ss_pred Hhh
Confidence 443
No 88
>PLN02789 farnesyltranstransferase
Probab=99.10 E-value=5.8e-07 Score=71.59 Aligned_cols=214 Identities=7% Similarity=0.027 Sum_probs=124.7
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC-cHHHHHHHHHHHHhcCCCCChHHHHHHHHHHh
Q 037620 48 YTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAK-RYDEAVELFREMEATNCKPSPHIFCTLINGLG 126 (330)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (330)
+..+-..+...+..++|+.+..++++.. +-+..+|+....++...| ++++++..++++.+.+ +.+..+|+....++.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 3444445556677788888888877763 224556665555555556 5677888887777765 556666766655555
Q ss_pred ccCcH--HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHc---CCH
Q 037620 127 SEKRL--SEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKA---GRT 201 (330)
Q Consensus 127 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~ 201 (330)
+.|+. +++..+++++.+.. +-+..+|+....++...|+++++++.++++++.++. +...|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 55542 56677777777664 346667777777777777777777777777776543 455565555444443 222
Q ss_pred ----HHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhC----CCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhc
Q 037620 202 ----EEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYN----AQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCH 268 (330)
Q Consensus 202 ----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 268 (330)
++......+... ..+-+...|+.+...+... +...+|...+.+..+.++. +......|+..|+.
T Consensus 196 ~~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 344444444433 1233444555555555442 2334455555555544333 44455555555543
No 89
>PLN02789 farnesyltranstransferase
Probab=99.10 E-value=5.1e-07 Score=71.89 Aligned_cols=215 Identities=8% Similarity=0.032 Sum_probs=144.3
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhcc-ChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 037620 12 DFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQK-NLLSMNEVYREMKDDGFEPDVVSYGIMINAH 90 (330)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (330)
++..+-..+...++.++|+.+.+.+++.. |-+..+|+.--.++...| ++++++..++++.....+ +..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 34455555667788889999998888742 334556666656666666 578889988888877533 666777655555
Q ss_pred hccCcH--HHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhh---CC
Q 037620 91 CSAKRY--DEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWS---MR 165 (330)
Q Consensus 91 ~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~ 165 (330)
.+.|+. ++++.+++++.+.+ +-+..+|+....++...|+++++++.++++++.+ +.+...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhcccccc
Confidence 555553 67788888888776 6788888888888888888999999999988876 34666777666555544 22
Q ss_pred h----hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh
Q 037620 166 I----NDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKA----GRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCY 233 (330)
Q Consensus 166 ~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (330)
. ++......+++... +-+...|+-+...+... +...+|...+.+... ..+.+...+..|+..|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~--~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS--KDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc--ccCCcHHHHHHHHHHHHh
Confidence 2 35666666666653 33667777777777663 334557777766554 123345556666666654
No 90
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.10 E-value=2.5e-06 Score=71.33 Aligned_cols=101 Identities=9% Similarity=0.131 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC----------CC
Q 037620 153 YNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN---TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGT----------EP 219 (330)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~ 219 (330)
|..+.+.|-..|+.+.|..+|++..+...+-- ..+|..-...-.+..+++.|+.+.+.....+.. ++
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv 469 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV 469 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence 45555556666667777777766655432211 233444444445566666666666665431111 11
Q ss_pred ------chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 037620 220 ------TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL 253 (330)
Q Consensus 220 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 253 (330)
+...|...+..-...|-++....+|+++.+..+.
T Consensus 470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria 509 (835)
T KOG2047|consen 470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA 509 (835)
T ss_pred HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 2234455555555667777777777777665543
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.09 E-value=1.9e-06 Score=66.75 Aligned_cols=297 Identities=11% Similarity=0.076 Sum_probs=179.6
Q ss_pred HHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHH---HHHHhhccChHHHHHHHHHHHhCCCCCChHHHH-HHHHH
Q 037620 14 NRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTIL---LEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYG-IMINA 89 (330)
Q Consensus 14 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~ 89 (330)
--+-..+...|++.+|+.-|....+. |+..|.++ ...|...|+...|+.=+...++. +||-..-. .-...
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchh
Confidence 34455566667777777777777662 34444444 34566677777777777777665 55533221 12345
Q ss_pred HhccCcHHHHHHHHHHHHhcCCC--CChHHH------------HHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHH
Q 037620 90 HCSAKRYDEAVELFREMEATNCK--PSPHIF------------CTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNA 155 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (330)
+.+.|.+++|..-|+.++..... .....+ ...+..+...|+...|+..+..+.+.. +-+...+..
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~ 194 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQA 194 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHH
Confidence 66778888888888877765411 011111 122345566777777777777777763 456667777
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHH----HHHH----
Q 037620 156 VVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVST----YEIV---- 227 (330)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~l---- 227 (330)
-..+|...|.+..|+.-++...+..- .+..++-.+-..+...|+.+.++...++..+ +.||... |..|
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcchhhHHHHHHHHHHHH
Confidence 77778888888877776666655432 2445555566666777777777777776654 3444321 1111
Q ss_pred -----HHHHHhCCCHHHHHHHHHHHHhCCCCcc---HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 037620 228 -----VRMFCYNAQVDMAMRIWDEMKARGVLPV---MHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQ 299 (330)
Q Consensus 228 -----~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 299 (330)
+......++|.++.+-.+...+..+... ...+..+-.++...+++.+|+....+.++.. +.|..++..-..
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAe 349 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHH
Confidence 1223445667777776666665543311 2234445566667777888888777777543 233677777777
Q ss_pred HHHhcCchHHHHHHHHHHHhcCC
Q 037620 300 ALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 300 ~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
+|.-...++.|+.-+++..+.+.
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCc
Confidence 77777777777777777766554
No 92
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.08 E-value=2.1e-07 Score=78.51 Aligned_cols=240 Identities=13% Similarity=0.092 Sum_probs=182.6
Q ss_pred CCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHH
Q 037620 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYG 84 (330)
Q Consensus 5 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (330)
+++|--..-..+...+...|-...|..+|+++. .|.-.+.+|...|+..+|..+..+..++ +|+...|.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc 461 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYC 461 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHH
Confidence 344544455567778888999999999998764 4777888899999999999999888884 78999999
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhC
Q 037620 85 IMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSM 164 (330)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (330)
.+........-++.|.++.+..... +-..+.....+.++++++.+.++...+.. +....+|-.+..+..+.+
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLE 533 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHh
Confidence 9988888777788888888775433 22223333445789999999998877764 456778888888889999
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHH
Q 037620 165 RINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244 (330)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 244 (330)
+++.|.+.|.....-. +-+...|+.+-.+|.+.++-.+|...+.+..+ .+ .-+...|..-+....+.|.++.|.+.+
T Consensus 534 k~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred hhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHH
Confidence 9999999998887742 22467899999999999999999999999887 44 445667777777788999999999999
Q ss_pred HHHHhCCC-CccHHHHHHHHHHH
Q 037620 245 DEMKARGV-LPVMHMYSTLINSL 266 (330)
Q Consensus 245 ~~~~~~~~-~~~~~~~~~l~~~~ 266 (330)
.++..... ..|..+...++...
T Consensus 611 ~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 611 HRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHHHHhhhhcccchhhHHHHHHH
Confidence 88765311 11444444444443
No 93
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.03 E-value=8.9e-07 Score=80.04 Aligned_cols=243 Identities=6% Similarity=0.019 Sum_probs=185.7
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCC-----ChHHHHHHHHHHhccCcHHHHHHH
Q 037620 28 RAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEP-----DVVSYGIMINAHCSAKRYDEAVEL 102 (330)
Q Consensus 28 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~ 102 (330)
.|.++-+.++. -|-+...|-..|......++.++|.+++++.+.. +.+ -...|.++++.-...|.-+...++
T Consensus 1443 saeDferlvrs--sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1443 SAEDFERLVRS--SPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CHHHHHHHHhc--CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 34444333333 2445677888888899999999999999999865 222 235677888877777888889999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCC
Q 037620 103 FREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIG 182 (330)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 182 (330)
|+++.+.. ..-..|..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.+..+.-..
T Consensus 1520 FeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1520 FERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 99998764 23457888999999999999999999999876 3357788999999999999999999999998875222
Q ss_pred -CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccH--HHH
Q 037620 183 -PNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVM--HMY 259 (330)
Q Consensus 183 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 259 (330)
-........+..-.+.|+.+.+..+|+.... ..+-....|+..++.-.++|+.+.++.+|+++...++.|-. ..|
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~--ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfff 1674 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLS--AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFF 1674 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHh--hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHH
Confidence 1234555566667789999999999999886 34445668999999999999999999999999998877643 345
Q ss_pred HHHHHHHhccCChhHHHHH
Q 037620 260 STLINSLCHEDKLDDACKY 278 (330)
Q Consensus 260 ~~l~~~~~~~~~~~~a~~~ 278 (330)
...+..=-..|+-..+..+
T Consensus 1675 KkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1675 KKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHHHHHHHhcCchhhHHHH
Confidence 5556554555664444433
No 94
>PF12854 PPR_1: PPR repeat
Probab=99.03 E-value=4.4e-10 Score=56.69 Aligned_cols=33 Identities=39% Similarity=0.709 Sum_probs=23.9
Q ss_pred CCCCCChhhHHHHHHHHHccCChHHHHHHHHHH
Q 037620 4 FGLKQELPDFNRLIDTLCKSRHVERAQEVFDKM 36 (330)
Q Consensus 4 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 36 (330)
.|++||..+||+||.+|++.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 367777777777777777777777777777766
No 95
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.03 E-value=3e-06 Score=78.73 Aligned_cols=308 Identities=8% Similarity=0.001 Sum_probs=194.7
Q ss_pred HHHHHHHccCChHHHHHHHHHHhhC--CC----CCCh--HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCCh----HH
Q 037620 15 RLIDTLCKSRHVERAQEVFDKMKKR--RF----DPDI--KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDV----VS 82 (330)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~--~~----~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 82 (330)
.....+...|++++|..++...... .. .+.. .....+...+...|++++|...++.....-...+. ..
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 3445556778999999888876542 10 1111 12222334556789999999999988764111121 23
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCC---CC--ChHHHHHHHHHHhccCcHHHHHHHHHHHHhc----CCC--C-Ch
Q 037620 83 YGIMINAHCSAKRYDEAVELFREMEATNC---KP--SPHIFCTLINGLGSEKRLSEALQFFGQSKKR----GFE--P-EA 150 (330)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~ 150 (330)
.+.+...+...|++++|...+++.....- .+ ...++..+...+...|+++.|...+.+.... +.. + ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 45566677789999999999988764310 11 1234556677788899999999988876542 211 1 12
Q ss_pred hhHHHHHHHHHhhCChhHHHHHHHHHHHcC--CCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---CCCCCchHH
Q 037620 151 PTYNAVVGAYCWSMRINDAYRMMDEMRKCG--IGP--NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRK---PGTEPTVST 223 (330)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~ 223 (330)
..+..+...+...|++++|...+++..... ..+ ....+..+...+...|++++|...+...... .+.......
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 234455566777899999999888765421 111 2334455666778899999999988887531 111111101
Q ss_pred H--HHHHHHHHhCCCHHHHHHHHHHHHhCCCCcc---HHHHHHHHHHHhccCChhHHHHHHHHHHhc----CCCC-Chhh
Q 037620 224 Y--EIVVRMFCYNAQVDMAMRIWDEMKARGVLPV---MHMYSTLINSLCHEDKLDDACKYFQEMLDI----GIRP-PGQL 293 (330)
Q Consensus 224 ~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 293 (330)
. ...+..+...|+.+.|..++........... ...+..+..++...|++++|...+++.... |..+ ...+
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~ 733 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRN 733 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 0 1122445568899999998877554221111 111345667888899999999999988753 2222 1345
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 294 FSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 294 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
...+..++.+.|+.++|...+.+..+...
T Consensus 734 ~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 734 LILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 66677888999999999999988876543
No 96
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=1.3e-06 Score=65.12 Aligned_cols=258 Identities=11% Similarity=0.063 Sum_probs=170.5
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHH
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIM 86 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (330)
-|+...|+ ++-+.-.|++..++..-....... .+...-..+.++|...|.+.....- .... -.|.......+
T Consensus 7 g~~d~LF~--iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~e---I~~~-~~~~lqAvr~~ 78 (299)
T KOG3081|consen 7 GPEDELFN--IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISE---IKEG-KATPLQAVRLL 78 (299)
T ss_pred CcchhHHH--HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccc---cccc-cCChHHHHHHH
Confidence 34433443 345555688888877665554432 3455555566777777776544432 2222 23444444444
Q ss_pred HHHHhccCcHHH-HHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCC
Q 037620 87 INAHCSAKRYDE-AVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMR 165 (330)
Q Consensus 87 l~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (330)
......-++.+. ..++.+.+.......+......-...|++.|++++|++...... +......=+..+.+..+
T Consensus 79 a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r 152 (299)
T KOG3081|consen 79 AEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHR 152 (299)
T ss_pred HHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHH
Confidence 444444444333 33455555555444454444555678999999999999887622 23334444556778889
Q ss_pred hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHH
Q 037620 166 INDAYRMMDEMRKCGIGPNTRTYDIVLHHLIK----AGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAM 241 (330)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 241 (330)
++-|...++.|.+.. +..|.+.|..++.+ .+...+|+-+|+++.+ ..+|+..+.+....++...|++++|.
T Consensus 153 ~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe 227 (299)
T KOG3081|consen 153 FDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAE 227 (299)
T ss_pred HHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHH
Confidence 999999999998843 66788888887765 3568899999999976 57888889999999999999999999
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHHhccCChhH-HHHHHHHHHh
Q 037620 242 RIWDEMKARGVLPVMHMYSTLINSLCHEDKLDD-ACKYFQEMLD 284 (330)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~ 284 (330)
.++++....... ++.+...++-+-...|...+ ..+.+.++..
T Consensus 228 ~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 228 SLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 999999988666 66777766666566665544 4456666654
No 97
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.02 E-value=6.7e-08 Score=81.44 Aligned_cols=223 Identities=13% Similarity=0.069 Sum_probs=158.6
Q ss_pred CChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 037620 78 PDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVV 157 (330)
Q Consensus 78 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (330)
|-...-..+...+...|-...|..+|+++. .|..++.+|...|+..+|..+..+..+. +|+...|..+.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 333344556677778888888888887753 4666788888888888888888887774 67888888887
Q ss_pred HHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCH
Q 037620 158 GAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQV 237 (330)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (330)
.......-++.|.++.+..... .-..+.....+.+++.++.+.|+.-.+. .+....+|-.+..+..+.+++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhh
Confidence 7776666677777777654332 1111222223467788888888776652 233455777777777888888
Q ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHH
Q 037620 238 DMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKI 317 (330)
Q Consensus 238 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 317 (330)
+.|.+.|..-....+. +...||.+-.+|.+.++-.+|...+++..+.+ .-+...|...+-...+.|.+++|.+.++++
T Consensus 536 q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 8888888877766444 56778888888888888888888888888766 456667777777778888888888888777
Q ss_pred HhcCC
Q 037620 318 DKLRK 322 (330)
Q Consensus 318 ~~~~~ 322 (330)
.....
T Consensus 614 l~~~~ 618 (777)
T KOG1128|consen 614 LDLRK 618 (777)
T ss_pred HHhhh
Confidence 65544
No 98
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.01 E-value=1.7e-07 Score=72.21 Aligned_cols=185 Identities=12% Similarity=0.034 Sum_probs=120.1
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCCh---HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChH---H
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDV---VSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPH---I 117 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~ 117 (330)
....+..+...+...|+++.|...|+++..... .+. ..+..+..++...|++++|...++++.+.. |.+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHH
Confidence 455677777778888888888888888877631 122 456667788888888888888888887654 22222 4
Q ss_pred HHHHHHHHhcc--------CcHHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHH
Q 037620 118 FCTLINGLGSE--------KRLSEALQFFGQSKKRGFEPEA-PTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTY 188 (330)
Q Consensus 118 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 188 (330)
+..+..++... |++++|.+.++.+.+.. |+. ..+..+..... ... .. ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~--------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RL--------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HH--------HHHH
Confidence 55555555543 67888888888887662 332 22222211100 000 00 0111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 037620 189 DIVLHHLIKAGRTEEAYSVFKRMSRKPGTEP-TVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR 250 (330)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 250 (330)
..+...+.+.|++++|...++...+.....| ....+..+..++...|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2455668888999999988888876433222 4567788888889999999999888887654
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.01 E-value=1.9e-07 Score=71.96 Aligned_cols=186 Identities=11% Similarity=-0.050 Sum_probs=130.5
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCh---HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCCh--HH
Q 037620 8 QELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDI---KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDV--VS 82 (330)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 82 (330)
.....+..+...+...|++++|...|+.+.... |.+. .++..+..++...|++++|...++++.+....... .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345667888888999999999999999998742 2232 46778888999999999999999999987422111 24
Q ss_pred HHHHHHHHhcc--------CcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHH
Q 037620 83 YGIMINAHCSA--------KRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYN 154 (330)
Q Consensus 83 ~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (330)
+..+..++... |+.+.|.+.|+++.... |.+...+..+..... .... . .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~~------~--------~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRNR------L--------AGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHHH------H--------HHHHH
Confidence 55555556554 78899999999998775 333333332221111 0000 0 01112
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 155 AVVGAYCWSMRINDAYRMMDEMRKCGI--GPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
.+...+.+.|++.+|...++....... +.....+..+..++...|++++|..+++.+..
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456678889999999999999887532 22356788899999999999999999888865
No 100
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.99 E-value=5.5e-06 Score=64.22 Aligned_cols=272 Identities=9% Similarity=0.072 Sum_probs=198.2
Q ss_pred CChhhHHHHH---HHHHccCChHHHHHHHHHHhhCCCCCChHHH-HHHHHHHhhccChHHHHHHHHHHHhCCCCCC--hH
Q 037620 8 QELPDFNRLI---DTLCKSRHVERAQEVFDKMKKRRFDPDIKSY-TILLEGWGQQKNLLSMNEVYREMKDDGFEPD--VV 81 (330)
Q Consensus 8 ~~~~~~~~li---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~ 81 (330)
.|+..|.++. ..|...|+...|+.=++..++. +||-..- ..-...+.+.|.++.|..=|+..++....-+ ..
T Consensus 67 ~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~e 144 (504)
T KOG0624|consen 67 GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLE 144 (504)
T ss_pred CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHH
Confidence 3444454443 4678889999998888888874 5775432 2234567899999999999999998742111 11
Q ss_pred ------------HHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCC
Q 037620 82 ------------SYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPE 149 (330)
Q Consensus 82 ------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 149 (330)
.....+..+...|+...|+.....+++.. +.+...+..-..+|...|++..|+.=+....+.. ..+
T Consensus 145 aqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~Dn 222 (504)
T KOG0624|consen 145 AQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDN 222 (504)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccc
Confidence 12234455667899999999999999886 8899999999999999999999999888887774 345
Q ss_pred hhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHH-------------HHHHHHcCCHHHHHHHHHHhhcCCC
Q 037620 150 APTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIV-------------LHHLIKAGRTEEAYSVFKRMSRKPG 216 (330)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------------~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (330)
..++--+-..+...|+.+.++...++..+. .||...+-.. +......++|-++++..+...+...
T Consensus 223 Te~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep 300 (504)
T KOG0624|consen 223 TEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEP 300 (504)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 566666777888899999999888888774 4554322111 1233456778888888887766222
Q ss_pred CCC--chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 037620 217 TEP--TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 217 ~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 286 (330)
..+ ....+..+-.++...+++.+|++...+..+.... |..++..-..+|.....++.|+.-|+...+.+
T Consensus 301 ~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 301 EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred cccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 111 1223455667777889999999999998876433 58888888999999999999999999888654
No 101
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=6.2e-06 Score=67.57 Aligned_cols=191 Identities=13% Similarity=0.109 Sum_probs=110.2
Q ss_pred hccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHH-------HHHHHHHc
Q 037620 126 GSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDI-------VLHHLIKA 198 (330)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~ 198 (330)
.+..++..|.+.+....+.. .+..-++....+|...|.+..+....+...+.|.. ...-|+. +..+|.+.
T Consensus 235 ykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhH
Confidence 33334444444444443332 23333344444455555555444444444333321 1112222 22355556
Q ss_pred CCHHHHHHHHHHhhcCCCCCCchHHH-------------------------HHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 037620 199 GRTEEAYSVFKRMSRKPGTEPTVSTY-------------------------EIVVRMFCYNAQVDMAMRIWDEMKARGVL 253 (330)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~~~~~-------------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 253 (330)
++++.+...|.+.... ...|+...- ..-...+.+.|++..|...|.+++...+.
T Consensus 312 ~~~~~ai~~~~kaLte-~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~ 390 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTE-HRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE 390 (539)
T ss_pred HhHHHHHHHHHHHhhh-hcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc
Confidence 7777787777776552 222222110 11134466778888888888888887644
Q ss_pred ccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 254 PVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 254 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
|...|....-+|.+.|.+..|++-.+..++.. ++....|..=..++....++++|.+.+++..+.++
T Consensus 391 -Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 391 -DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred -hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 77888888888888888888888877777653 33445555556666677788888888888777664
No 102
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.95 E-value=7.6e-07 Score=66.23 Aligned_cols=164 Identities=10% Similarity=0.049 Sum_probs=106.7
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 037620 114 SPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLH 193 (330)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 193 (330)
+..+ ..+-..+...|+-+....+....... .+.+....+.++....+.|++..|...+++..... ++|..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 4444 55556666677766666666554333 13344555567777777777777777777776643 456777777777
Q ss_pred HHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChh
Q 037620 194 HLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLD 273 (330)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 273 (330)
+|.+.|+.+.|..-|.+..+-.+- +...++.+.-.+.-.|+.+.|..++......+.. |..+-..+..+....|+++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~--~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPN--EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccC--CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChH
Confidence 777777777777777777663222 3345566777777777777777777777665444 5556666666677777777
Q ss_pred HHHHHHHHHH
Q 037620 274 DACKYFQEML 283 (330)
Q Consensus 274 ~a~~~~~~~~ 283 (330)
+|..+...-.
T Consensus 220 ~A~~i~~~e~ 229 (257)
T COG5010 220 EAEDIAVQEL 229 (257)
T ss_pred HHHhhccccc
Confidence 7777665443
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.95 E-value=6.9e-07 Score=66.32 Aligned_cols=118 Identities=9% Similarity=0.093 Sum_probs=79.9
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHH-HhhCC--hhHH
Q 037620 93 AKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAY-CWSMR--INDA 169 (330)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a 169 (330)
.++.+++...++...+.+ |.+...|..+...|...|++++|...+++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 555666666666666665 6677777777777777777777777777777664 34556666666653 45555 4777
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 170 YRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
..++++..+.+.. +...+..+...+...|++++|...|+++.+
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777777775432 556666777777777777777777777765
No 104
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=2.1e-06 Score=65.15 Aligned_cols=268 Identities=12% Similarity=0.123 Sum_probs=167.4
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHH-HHHHhhccChHHHHHHHHHHHhCC------------
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTIL-LEGWGQQKNLLSMNEVYREMKDDG------------ 75 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~------------ 75 (330)
+......|..+|....++..|-+.++.+... .|...-|... ...+.+.+.+..|+++...|.+..
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaA 120 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAA 120 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5566777788888888888888888888763 3444444321 234445566666666665554320
Q ss_pred ------C-------------CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHH
Q 037620 76 ------F-------------EPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQ 136 (330)
Q Consensus 76 ------~-------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 136 (330)
- .-+..+.+...-...+.|+++.|.+-|+...+-+--.....|+..+ +..+.|+++.|++
T Consensus 121 IkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk 199 (459)
T KOG4340|consen 121 IKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALK 199 (459)
T ss_pred HhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHH
Confidence 0 0122333333344557899999999999988754233345666555 5667899999999
Q ss_pred HHHHHHhcCCCCCh----------------------------hhHHHHHHHHHhhCChhHHHHHHHHHHHcC-CCCcHHH
Q 037620 137 FFGQSKKRGFEPEA----------------------------PTYNAVVGAYCWSMRINDAYRMMDEMRKCG-IGPNTRT 187 (330)
Q Consensus 137 ~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~ 187 (330)
...+++++|+...+ ..+|.-...+.+.++++.|.+.+-.|..+. -..|+.|
T Consensus 200 ~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvT 279 (459)
T KOG4340|consen 200 HISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVT 279 (459)
T ss_pred HHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchh
Confidence 99999999964211 112333334567789999998888875432 3356777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-ccHHHHHHHHHHH
Q 037620 188 YDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL-PVMHMYSTLINSL 266 (330)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 266 (330)
...+.-.- ..+++.+..+-+.-+..... -...||..++-.||++.-++.|-.++.+-...... .+...|+. +.++
T Consensus 280 LHN~Al~n-~~~~p~~g~~KLqFLL~~nP--fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaL 355 (459)
T KOG4340|consen 280 LHNQALMN-MDARPTEGFEKLQFLLQQNP--FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDAL 355 (459)
T ss_pred hhHHHHhc-ccCCccccHHHHHHHHhcCC--CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHH
Confidence 76654332 23456666666666655322 33458888999999999999999888763332111 23344443 3333
Q ss_pred h-ccCChhHHHHHHHHHH
Q 037620 267 C-HEDKLDDACKYFQEML 283 (330)
Q Consensus 267 ~-~~~~~~~a~~~~~~~~ 283 (330)
. ..-..++|.+-+..+.
T Consensus 356 It~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 356 ITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HhCCCCHHHHHHHHHHHH
Confidence 3 3455677777666654
No 105
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.94 E-value=8.9e-07 Score=78.69 Aligned_cols=220 Identities=11% Similarity=0.121 Sum_probs=156.8
Q ss_pred CChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHH
Q 037620 43 PDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDV-VSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTL 121 (330)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (330)
.+...+..|+..+...+++++|.++.+...+. .|+. ..|..+...+.+.++...+.-+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 35678999999999999999999999987776 3443 3444444456666664444333 34
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCH
Q 037620 122 INGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRT 201 (330)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (330)
+.......++..+..+...+...+ -+...+..+..+|.+.|+.+++..+++++.+.. +-++.+.+.+...|... +.
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 455555556655555555665543 355678889999999999999999999999987 45888999999999999 99
Q ss_pred HHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-------------------CCCccHHHHHHH
Q 037620 202 EEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR-------------------GVLPVMHMYSTL 262 (330)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------------~~~~~~~~~~~l 262 (330)
++|..++.+.... +...+++..+..+|.++... +..--..++..+
T Consensus 166 ~KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l 229 (906)
T PRK14720 166 EKAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDL 229 (906)
T ss_pred HHHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHH
Confidence 9999999887652 33344455555555544443 222234455666
Q ss_pred HHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 037620 263 INSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALR 302 (330)
Q Consensus 263 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 302 (330)
-..|-..++|+++..+++.+++.. +-|......++..|.
T Consensus 230 ~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 230 YEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 678888999999999999999876 336666777777776
No 106
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=1.7e-05 Score=65.81 Aligned_cols=194 Identities=12% Similarity=0.070 Sum_probs=111.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhc
Q 037620 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCS 92 (330)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (330)
.-+=+..+...|++++|.+....+...+ |-+...+..=+-+..+.+.+++|+.+.+.-... ..+...+.--+.+..+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHH
Confidence 3344566778889999999999998854 556666777677788888888888655443211 1111111122344556
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCC------------------------
Q 037620 93 AKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEP------------------------ 148 (330)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------------------ 148 (330)
.+..++|+..++-.. +.+..+...-...+.+.|++++|..+|+.+.+.+.+.
T Consensus 92 lnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred cccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 777777777776221 2233355555666777777777777777765443110
Q ss_pred ---ChhhHHHH---HHHHHhhCChhHHHHHHHHHHHcC--------C-----CCcHH-HHHHHHHHHHHcCCHHHHHHHH
Q 037620 149 ---EAPTYNAV---VGAYCWSMRINDAYRMMDEMRKCG--------I-----GPNTR-TYDIVLHHLIKAGRTEEAYSVF 208 (330)
Q Consensus 149 ---~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~--------~-----~~~~~-~~~~l~~~~~~~~~~~~a~~~~ 208 (330)
...+|..+ ...+...|++.+|+++++...+.+ . ..... .-..+.-++...|+.++|..++
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 11233322 233456678888888877762211 0 00001 1122334556678888888877
Q ss_pred HHhhc
Q 037620 209 KRMSR 213 (330)
Q Consensus 209 ~~~~~ 213 (330)
..+.+
T Consensus 248 ~~~i~ 252 (652)
T KOG2376|consen 248 VDIIK 252 (652)
T ss_pred HHHHH
Confidence 77665
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.92 E-value=6e-07 Score=66.61 Aligned_cols=156 Identities=8% Similarity=0.119 Sum_probs=117.2
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCH
Q 037620 122 INGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRT 201 (330)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (330)
+..|...|+++.+....+.+.. |. . .+...++.+++...++...+.. +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 4578889998887655433221 11 0 1223566778888888877764 44788999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCchHHHHHHHHH-HHhCCC--HHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHH
Q 037620 202 EEAYSVFKRMSRKPGTEPTVSTYEIVVRM-FCYNAQ--VDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKY 278 (330)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 278 (330)
++|...+++..+. .+.+...+..+..+ +...|+ .++|.+++++..+.+.. +...+..+...+...|++++|+..
T Consensus 90 ~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 90 DNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999998872 33456677777776 467676 59999999999988766 778889999999999999999999
Q ss_pred HHHHHhcCCCCChhhH
Q 037620 279 FQEMLDIGIRPPGQLF 294 (330)
Q Consensus 279 ~~~~~~~~~~~~~~~~ 294 (330)
|+++++.. +|+..-+
T Consensus 167 ~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 167 WQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHhhC-CCCccHH
Confidence 99998765 4444443
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.91 E-value=2.3e-07 Score=65.13 Aligned_cols=95 Identities=9% Similarity=-0.099 Sum_probs=60.7
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc
Q 037620 48 YTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGS 127 (330)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (330)
+..+...+...|++++|...|+.+.... +.+...|..+..++...|++++|...|+.....+ +.+..++..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4445555666666666666666666553 3355666666666666666666666666666654 5566666666666666
Q ss_pred cCcHHHHHHHHHHHHhc
Q 037620 128 EKRLSEALQFFGQSKKR 144 (330)
Q Consensus 128 ~~~~~~a~~~~~~~~~~ 144 (330)
.|++++|...|....+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666655
No 109
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.91 E-value=6.8e-06 Score=70.18 Aligned_cols=254 Identities=13% Similarity=0.075 Sum_probs=169.9
Q ss_pred hHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHH
Q 037620 26 VERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFRE 105 (330)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 105 (330)
..++++.+++..+.+ +.|+.+...+.--|+..++++.|.+...+..+.+...+...|..+.-.+...+++.+|+.+.+.
T Consensus 460 h~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 346777788777753 2233333333334667788888888888888875566888888888888888888888888877
Q ss_pred HHhcCCCCC--------------------hHHHHHHHHHHhc-----------------------cCcHHHHHHHHHHH-
Q 037620 106 MEATNCKPS--------------------PHIFCTLINGLGS-----------------------EKRLSEALQFFGQS- 141 (330)
Q Consensus 106 ~~~~~~~~~--------------------~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~- 141 (330)
....- +.| ..|...++..+-. ..+..++.+...++
T Consensus 539 al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 539 ALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 65431 111 1122222222210 00111111111110
Q ss_pred -------HhcC---------CCCCh--------hhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Q 037620 142 -------KKRG---------FEPEA--------PTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIK 197 (330)
Q Consensus 142 -------~~~~---------~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (330)
...+ ..|.. ..|......+.+.+..++|...+.+..+.. +.....|......+..
T Consensus 618 ~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~ 696 (799)
T KOG4162|consen 618 SLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEV 696 (799)
T ss_pred HHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHH
Confidence 0001 01111 124445556677788888888888877653 4466777777788889
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHH--HHHHHHhCCCCccHHHHHHHHHHHhccCChhHH
Q 037620 198 AGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMR--IWDEMKARGVLPVMHMYSTLINSLCHEDKLDDA 275 (330)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 275 (330)
.|++++|...|..... -.+.++....++..++...|+..-|.. ++.++.+.++. +...|..+...+.+.|+.++|
T Consensus 697 ~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 697 KGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred HHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHH
Confidence 9999999999998865 222345567889999999998887877 99999998877 899999999999999999999
Q ss_pred HHHHHHHHhc
Q 037620 276 CKYFQEMLDI 285 (330)
Q Consensus 276 ~~~~~~~~~~ 285 (330)
.+.|....+.
T Consensus 774 aecf~aa~qL 783 (799)
T KOG4162|consen 774 AECFQAALQL 783 (799)
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 110
>PF12854 PPR_1: PPR repeat
Probab=98.89 E-value=2.9e-09 Score=53.68 Aligned_cols=32 Identities=25% Similarity=0.571 Sum_probs=20.3
Q ss_pred CCCCChHHHHHHHHHHhhccChHHHHHHHHHH
Q 037620 40 RFDPDIKSYTILLEGWGQQKNLLSMNEVYREM 71 (330)
Q Consensus 40 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 71 (330)
|++||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666655
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.89 E-value=1.4e-06 Score=64.81 Aligned_cols=159 Identities=9% Similarity=0.042 Sum_probs=112.9
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhh
Q 037620 84 GIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWS 163 (330)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (330)
..+-..+...|+-+....+..+..... +.+.......+....+.|++..|...+.+..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 555666777777777777766654433 4555666667777788888888888888877764 66778888888888888
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHH
Q 037620 164 MRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRI 243 (330)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 243 (330)
|+++.|..-|.+..+... -++...+.+.-.+.-.|+.+.|..++..... ...-|..+-..+.......|+++.|..+
T Consensus 148 Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l--~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYL--SPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHh--CCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 888888888877777532 2556677777777778888888888887765 2223555556677777788888888877
Q ss_pred HHHH
Q 037620 244 WDEM 247 (330)
Q Consensus 244 ~~~~ 247 (330)
...-
T Consensus 225 ~~~e 228 (257)
T COG5010 225 AVQE 228 (257)
T ss_pred cccc
Confidence 6543
No 112
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.89 E-value=2e-05 Score=73.38 Aligned_cols=301 Identities=10% Similarity=-0.010 Sum_probs=178.5
Q ss_pred HHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCC------CCC--hHHHHHHHHHHh
Q 037620 20 LCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGF------EPD--VVSYGIMINAHC 91 (330)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~ll~~~~ 91 (330)
+...|+++.+..+++.+.......+..........+...|+++++..++......-- .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 334455555555555542211111222223344455677889999888887754310 111 112222334566
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCC----hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCC---CC--ChhhHHHHHHHHHh
Q 037620 92 SAKRYDEAVELFREMEATNCKPS----PHIFCTLINGLGSEKRLSEALQFFGQSKKRGF---EP--EAPTYNAVVGAYCW 162 (330)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~ 162 (330)
..|++++|...+++........+ ....+.+...+...|++++|...+.+...... .+ .......+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 78999999999988765321111 12445566677889999999999888764311 11 12344556667788
Q ss_pred hCChhHHHHHHHHHHH----cCCC--C-cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---CCCCCchHHHHHHHHHHH
Q 037620 163 SMRINDAYRMMDEMRK----CGIG--P-NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRK---PGTEPTVSTYEIVVRMFC 232 (330)
Q Consensus 163 ~~~~~~a~~~~~~~~~----~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~~~ 232 (330)
.|++++|...+++... .+.. + ....+..+...+...|++++|...+.+.... .+.......+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 9999999998887654 2211 1 1233445556677789999999888876541 111112334455667788
Q ss_pred hCCCHHHHHHHHHHHHhCC--CCccHH--HH--HHHHHHHhccCChhHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHh
Q 037620 233 YNAQVDMAMRIWDEMKARG--VLPVMH--MY--STLINSLCHEDKLDDACKYFQEMLDIGIRPP---GQLFSNLKQALRD 303 (330)
Q Consensus 233 ~~~~~~~a~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 303 (330)
..|+++.|.+.++...... ...... .. ...+..+...|+.+.|..++........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8999999999988875421 111110 00 1122344557889999998877654221111 1113456777889
Q ss_pred cCchHHHHHHHHHHHhc
Q 037620 304 EGMEETAVVLAQKIDKL 320 (330)
Q Consensus 304 ~g~~~~a~~~~~~~~~~ 320 (330)
.|++++|...+++....
T Consensus 704 ~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 704 LGQFDEAEIILEELNEN 720 (903)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999887654
No 113
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.88 E-value=2.8e-05 Score=65.37 Aligned_cols=292 Identities=13% Similarity=0.170 Sum_probs=182.2
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC---hHHHHHHHHHHhhccChHHHHHHHHHHHhCCCC-----------
Q 037620 12 DFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPD---IKSYTILLEGWGQQKNLLSMNEVYREMKDDGFE----------- 77 (330)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------- 77 (330)
.|-.+.+.|-..|+++.|..+|+...+...+-- ..+|..-...=.+..+++.|+++.+.....--.
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 477788888888999999999988887543322 345655566666777888888887776543111
Q ss_pred C------ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCCh-
Q 037620 78 P------DVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEA- 150 (330)
Q Consensus 78 ~------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 150 (330)
+ +...|...+..--..|-++....+|+++.+..+ .++.........+-...-++++.+++++-+..--.|++
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 1 223444555555556777788888888887763 34444444444455566678888888776555333443
Q ss_pred hhHHHHHHHHHhh---CChhHHHHHHHHHHHcCCCCcHHHHHHHH--HHHHHcCCHHHHHHHHHHhhcCCCCCCc--hHH
Q 037620 151 PTYNAVVGAYCWS---MRINDAYRMMDEMRKCGIGPNTRTYDIVL--HHLIKAGRTEEAYSVFKRMSRKPGTEPT--VST 223 (330)
Q Consensus 151 ~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 223 (330)
..|+..+.-+.+. ..++.|..+|++..+ +.+|...-+--|+ ..--+.|-...|..++++... ++++. ...
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~m 624 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDM 624 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHH
Confidence 3566666555542 368889999999988 5555433222222 112245778889999998765 34443 346
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHH---HHHHHHhccCChhHHHHHHHHHHhc-CCCCChhhHHHHHH
Q 037620 224 YEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYS---TLINSLCHEDKLDDACKYFQEMLDI-GIRPPGQLFSNLKQ 299 (330)
Q Consensus 224 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~ 299 (330)
|+..|.-....=.+.....+|++.++. -|+..+-. .....=++.|..+.|..++..-.+. ....+...|..--.
T Consensus 625 yni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~ 702 (835)
T KOG2047|consen 625 YNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKE 702 (835)
T ss_pred HHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHH
Confidence 777776555555566677788887765 34544332 2334446788899999888766542 23334555665555
Q ss_pred HHHhcCchHH
Q 037620 300 ALRDEGMEET 309 (330)
Q Consensus 300 ~~~~~g~~~~ 309 (330)
.=.+.|+-+.
T Consensus 703 FEvrHGnedT 712 (835)
T KOG2047|consen 703 FEVRHGNEDT 712 (835)
T ss_pred HHHhcCCHHH
Confidence 5567777443
No 114
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=1.2e-05 Score=62.67 Aligned_cols=58 Identities=14% Similarity=0.026 Sum_probs=41.7
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 037620 261 TLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKID 318 (330)
Q Consensus 261 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (330)
.+.++++..|++.+|.++|-++....++.+..-...+.++|.+.++++-|+.++-++.
T Consensus 398 N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 3566777889999999999887655444333344456788889999999887765543
No 115
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.87 E-value=2.6e-05 Score=64.20 Aligned_cols=132 Identities=14% Similarity=0.186 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 037620 186 RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINS 265 (330)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (330)
.+|...+..-.+..-++.|..+|.+..+.....-++.+.++++..+| +++...|.++|+--.++- .-++.--...+.-
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~Yldf 444 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDF 444 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHH
Confidence 46667777777888888999999998885444447777888887665 467888999998755441 1133344566777
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCchHHHHHHHHHHHh
Q 037620 266 LCHEDKLDDACKYFQEMLDIGIRPP--GQLFSNLKQALRDEGMEETAVVLAQKIDK 319 (330)
Q Consensus 266 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (330)
+...++-..+..+|++.+..++.|+ ...|..++.-=..-|+...+.++-+++..
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 7888888899999999988765554 56888888877888998888888776643
No 116
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=1.2e-05 Score=60.23 Aligned_cols=252 Identities=13% Similarity=0.097 Sum_probs=165.1
Q ss_pred HHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHH
Q 037620 53 EGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132 (330)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (330)
+-+.-.|.+..++..-....... -+...-.-+.++|...|++..... ++.... .|....+..+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhH
Confidence 44555677777776665554432 244444456677777777654432 333333 444455555555555555555
Q ss_pred HHHH-HHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 037620 133 EALQ-FFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRM 211 (330)
Q Consensus 133 ~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (330)
.-.. +.+.+.......+......-...|+..+++++|++...... +......=+..+.+..+.+-|...+++|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 34444444333333333444567889999999999887621 2333333455667888999999999999
Q ss_pred hcCCCCCCchHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCC
Q 037620 212 SRKPGTEPTVSTYEIVVRMFCY----NAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGI 287 (330)
Q Consensus 212 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 287 (330)
.+ + .+..|.+.|..++.+ .+.+..|.-+|++|.++ ..|++.+.+....++...|++++|..+++..++..
T Consensus 164 q~---i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd- 237 (299)
T KOG3081|consen 164 QQ---I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD- 237 (299)
T ss_pred Hc---c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-
Confidence 86 1 345677777777754 35789999999999875 46788999999999999999999999999999876
Q ss_pred CCChhhHHHHHHHHHhcCchHH-HHHHHHHHHhcCC
Q 037620 288 RPPGQLFSNLKQALRDEGMEET-AVVLAQKIDKLRK 322 (330)
Q Consensus 288 ~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~ 322 (330)
..++.+...++-+-...|...+ ..+.+.++....+
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p 273 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHP 273 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Confidence 3467777777766666666544 4566666655444
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.83 E-value=1.8e-06 Score=75.82 Aligned_cols=137 Identities=7% Similarity=-0.031 Sum_probs=110.8
Q ss_pred CCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHH
Q 037620 40 RFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFC 119 (330)
Q Consensus 40 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (330)
.++.++..+..|.....+.|..++|+.+++...+.. +-+......++..+.+.+++++|...+++..... +.+.....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHH
Confidence 355667888888888888899999999998888873 3356667778888888899999999988888876 66777778
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHc
Q 037620 120 TLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179 (330)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (330)
.+..++.+.|++++|..+|+++...+ +.+..++..+...+...|+.++|...|+...+.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888999999999998888743 445778888888888889999998888888764
No 118
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.83 E-value=6.9e-07 Score=62.73 Aligned_cols=110 Identities=13% Similarity=0.043 Sum_probs=84.1
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 65 NEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
..++++..+. .|+ .+..+...+...|++++|...|+...... |.+...+..+..++.+.|++++|...|++....
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3455555544 333 34456777788888888888888888776 677888888888888888888888888888877
Q ss_pred CCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcC
Q 037620 145 GFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180 (330)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (330)
. +.+...+..+..++...|++++|...|+......
T Consensus 88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4 4577778888888888888888888888887753
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.82 E-value=7.3e-06 Score=72.12 Aligned_cols=135 Identities=13% Similarity=0.082 Sum_probs=120.0
Q ss_pred CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHH
Q 037620 76 FEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNA 155 (330)
Q Consensus 76 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (330)
...+...+..|.....+.|.+++|..+++...+.. |-+......++.++.+.+++++|...+++..... +.+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 45578899999999999999999999999999886 7778888999999999999999999999999885 446667788
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 156 VVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8889999999999999999999854 33578999999999999999999999999876
No 120
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=6.4e-05 Score=62.61 Aligned_cols=148 Identities=14% Similarity=0.100 Sum_probs=99.0
Q ss_pred hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH--------HhhcCCCCCCchHHHHHHHHHHHhCCCH
Q 037620 166 INDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFK--------RMSRKPGTEPTVSTYEIVVRMFCYNAQV 237 (330)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (330)
+..+..++...-+....-...+...++......|+++.|..++. .+.+ .+..|. +...+...+.+.++-
T Consensus 357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~~~P~--~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AKHLPG--TVGAIVALYYKIKDN 433 (652)
T ss_pred HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hccChh--HHHHHHHHHHhccCC
Confidence 45566666665554332234556667778888999999999998 4444 333443 556777778888887
Q ss_pred HHHHHHHHHHHhC--CCCccHHH----HHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHH
Q 037620 238 DMAMRIWDEMKAR--GVLPVMHM----YSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAV 311 (330)
Q Consensus 238 ~~a~~~~~~~~~~--~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 311 (330)
+.|..++.+.... .-.+.... +..++..-.+.|+-++|..+++++.+.. +++..+...++.+|.+. +++.|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHH
Confidence 7777777766542 11112222 3333334456799999999999999865 67888888999998876 677877
Q ss_pred HHHHHHH
Q 037620 312 VLAQKID 318 (330)
Q Consensus 312 ~~~~~~~ 318 (330)
.+-+.+.
T Consensus 512 ~l~k~L~ 518 (652)
T KOG2376|consen 512 SLSKKLP 518 (652)
T ss_pred HHhhcCC
Confidence 7766553
No 121
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=2.6e-05 Score=57.95 Aligned_cols=186 Identities=13% Similarity=0.119 Sum_probs=89.8
Q ss_pred CChHHHHHHHHHHhh---CC-CCCChH-HHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHH
Q 037620 24 RHVERAQEVFDKMKK---RR-FDPDIK-SYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDE 98 (330)
Q Consensus 24 ~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 98 (330)
.+.++..+++..+.. .| ..++.. .|..++-+....|+.+.|...++.+... ++-+...-..-...+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence 345555555555543 12 333332 2344444555556666666666665554 22222222222222334455666
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHH
Q 037620 99 AVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRK 178 (330)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (330)
|+++|+.+.+.+ |.|..++-.-+...-..|+..+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 666666666555 445555544444444455555555555554444 344555666666666666666666666665554
Q ss_pred cCCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHhhc
Q 037620 179 CGIGPNTRTYDIVLHHLIKAG---RTEEAYSVFKRMSR 213 (330)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~ 213 (330)
.. |.++..+..+...+.-.| +.+.+.+.|.+..+
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 32 123333333433333222 33444555554443
No 122
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.75 E-value=1e-06 Score=61.43 Aligned_cols=97 Identities=12% Similarity=0.057 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 037620 46 KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGL 125 (330)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (330)
.....+...+...|++++|.+.|+.+...+ +.+...+..+..++...|++++|..++++....+ +.+...+..+..++
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 344445555556666666666666665543 2355555556666666666666666666655554 44555555566666
Q ss_pred hccCcHHHHHHHHHHHHhc
Q 037620 126 GSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~ 144 (330)
...|++++|.+.++...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666554
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.72 E-value=4.9e-05 Score=61.89 Aligned_cols=141 Identities=11% Similarity=0.087 Sum_probs=96.5
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHHcCC
Q 037620 122 INGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN-TRTYDIVLHHLIKAGR 200 (330)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 200 (330)
...+...|+++.|+..+..+... .+.|+.........+.+.++.++|.+.++++.... |+ ....-.+..++.+.|+
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCC
Confidence 33455677788888888777766 24455555666677777888888888888777753 33 4555666777788888
Q ss_pred HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHH
Q 037620 201 TEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQ 280 (330)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 280 (330)
+.+|..+++.... ..+.|+..|..|.++|...|+..++..-.. ..+...|+++.|...+.
T Consensus 390 ~~eai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 390 PQEAIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLM 449 (484)
T ss_pred hHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHH
Confidence 8888888877765 455566677888888888777666654433 34455677777777777
Q ss_pred HHHhc
Q 037620 281 EMLDI 285 (330)
Q Consensus 281 ~~~~~ 285 (330)
...+.
T Consensus 450 ~A~~~ 454 (484)
T COG4783 450 RASQQ 454 (484)
T ss_pred HHHHh
Confidence 77653
No 124
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.72 E-value=1.4e-06 Score=60.72 Aligned_cols=109 Identities=14% Similarity=0.128 Sum_probs=72.7
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCC
Q 037620 68 YREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFE 147 (330)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (330)
++...... +.+......+...+...|++++|.+.|+.+...+ +.+...+..+..++...|++++|...+++..+.+ +
T Consensus 6 ~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p 82 (135)
T TIGR02552 6 LKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-P 82 (135)
T ss_pred HHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 44444442 1133445556667777777777777777776665 5566777777777777777777777777776664 4
Q ss_pred CChhhHHHHHHHHHhhCChhHHHHHHHHHHHc
Q 037620 148 PEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179 (330)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (330)
.+...+..+..++...|++++|...++...+.
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45566666677777777777777777777664
No 125
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=2.7e-05 Score=68.88 Aligned_cols=211 Identities=13% Similarity=0.188 Sum_probs=116.9
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 037620 79 DVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVG 158 (330)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (330)
.+..|..+..+-.+.|...+|++-|-+. .|+..|..+++...+.|.+++-.+++....+....|.. -+.|+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHH
Confidence 4456777777777777777776655332 35566777777888888888777777776666544443 345677
Q ss_pred HHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHH
Q 037620 159 AYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVD 238 (330)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (330)
+|++.++..+.++++ ..|+......+..-|...|.++.|.-+|.... -|..|...+...|++.
T Consensus 1175 AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS----------N~a~La~TLV~LgeyQ 1237 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS----------NFAKLASTLVYLGEYQ 1237 (1666)
T ss_pred HHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh----------hHHHHHHHHHHHHHHH
Confidence 777777766655443 22444444555555555555555555444332 2333344444444444
Q ss_pred HHHHHHHH------------------------HHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhH
Q 037620 239 MAMRIWDE------------------------MKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLF 294 (330)
Q Consensus 239 ~a~~~~~~------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 294 (330)
.|...-++ |...++.....-...++..|-..|-+++.+.+++..+... +.....|
T Consensus 1238 ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmf 1316 (1666)
T KOG0985|consen 1238 GAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMF 1316 (1666)
T ss_pred HHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHH
Confidence 43332222 2223333344445666777777777777777776655221 2234456
Q ss_pred HHHHHHHHhcCchHHHHHHHHH
Q 037620 295 SNLKQALRDEGMEETAVVLAQK 316 (330)
Q Consensus 295 ~~l~~~~~~~g~~~~a~~~~~~ 316 (330)
+.|.-.|.+- ++++..+-++-
T Consensus 1317 TELaiLYsky-kp~km~EHl~L 1337 (1666)
T KOG0985|consen 1317 TELAILYSKY-KPEKMMEHLKL 1337 (1666)
T ss_pred HHHHHHHHhc-CHHHHHHHHHH
Confidence 6666555553 34444444443
No 126
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.72 E-value=6.9e-06 Score=70.14 Aligned_cols=166 Identities=15% Similarity=0.274 Sum_probs=85.7
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHH
Q 037620 90 HCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDA 169 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (330)
.....+|.+|+.+++.+.... .-..-|..+..-|...|+++.|.++|-+. ..++--|.+|.+.|+|+.|
T Consensus 742 ai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHH
Confidence 334455556666665555443 22334555556666666666666665432 2344455666666666666
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 037620 170 YRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKA 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 249 (330)
.++-++.. |.......|..-..-+-..|++.+|.+++-.+.. |+. .|.+|-+.|..+..+++.++-..
T Consensus 811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~-----p~~-----aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE-----PDK-----AIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC-----chH-----HHHHHHhhCcchHHHHHHHHhCh
Confidence 66554432 2333444555555555556666666665554322 332 34555666666655555544221
Q ss_pred CCCCccHHHHHHHHHHHhccCChhHHHHHHHH
Q 037620 250 RGVLPVMHMYSTLINSLCHEDKLDDACKYFQE 281 (330)
Q Consensus 250 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 281 (330)
.. -..|...+..-+-..|+...|..-|-+
T Consensus 879 d~---l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 879 DH---LHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred hh---hhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 11 122344455555556666666555443
No 127
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.69 E-value=0.00018 Score=62.95 Aligned_cols=227 Identities=15% Similarity=0.114 Sum_probs=155.6
Q ss_pred HHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHH--HhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHH
Q 037620 20 LCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEG--WGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYD 97 (330)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 97 (330)
....+++.+|+.....+.+. .|+.. |...+.+ ..+.|+.++|..+++.....+.. |..|...+-.+|.+.++.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 45678999999999988774 24443 3333333 46889999999998888776544 8899999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhC-C---------hh
Q 037620 98 EAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSM-R---------IN 167 (330)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~ 167 (330)
+|..+|++..... |+......+..+|.+.+.+.+-.+.--++.+. .+.+...+-++++.+...- . ..
T Consensus 95 ~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 9999999998875 66888888888999999888766666666554 3445555555666555432 1 12
Q ss_pred HHHHHHHHHHHcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Q 037620 168 DAYRMMDEMRKCG-IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDE 246 (330)
Q Consensus 168 ~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 246 (330)
-|.+.++.+.+.+ ..-+..-...-...+...|.+++|++++..-....-...+...-+--+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 3555566665544 111222222233445578889999999943322122333444445667778888999999999999
Q ss_pred HHhCCCC
Q 037620 247 MKARGVL 253 (330)
Q Consensus 247 ~~~~~~~ 253 (330)
+...+..
T Consensus 252 Ll~k~~D 258 (932)
T KOG2053|consen 252 LLEKGND 258 (932)
T ss_pred HHHhCCc
Confidence 8887654
No 128
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=5.2e-05 Score=56.45 Aligned_cols=191 Identities=9% Similarity=0.067 Sum_probs=137.9
Q ss_pred ccChHHHHHHHHHHHhC---C-CCCChH-HHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHH
Q 037620 58 QKNLLSMNEVYREMKDD---G-FEPDVV-SYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132 (330)
Q Consensus 58 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (330)
..+.++..+++..+... | ..++.. .|..++-+....|+.+.|..+++.+...- |-+..+-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 34567777777777643 3 444544 35566677778899999999999988763 444443333334456689999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 037620 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMS 212 (330)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (330)
+|.++++.+.+.+ +.|..++..-+...-..|+..+|++-+....+. +..|...|.-+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999999886 556677776666677778888888888887776 55699999999999999999999999999987
Q ss_pred cCCCCCCchHHHHHHHHHHHhCC---CHHHHHHHHHHHHhCCCC
Q 037620 213 RKPGTEPTVSTYEIVVRMFCYNA---QVDMAMRIWDEMKARGVL 253 (330)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~ 253 (330)
- ..|.++..+..+...+.-.| +...+.+.|.+..+....
T Consensus 182 l--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 182 L--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK 223 (289)
T ss_pred H--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH
Confidence 5 23334444555555544433 667888899888876543
No 129
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.67 E-value=6.6e-06 Score=72.31 Aligned_cols=162 Identities=16% Similarity=0.128 Sum_probs=101.3
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCC-CCChHHHHHHHHH
Q 037620 11 PDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGF-EPDVVSYGIMINA 89 (330)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~ 89 (330)
..|..|-..|+...+...|...|+...+.+ +.+...+......|++..+++.|..+.-..-+... ..-...|....-.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 457777777777777788888888777643 34667777888888888888888877333222210 0011222334445
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHH--HHHHHHhhCChh
Q 037620 90 HCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNA--VVGAYCWSMRIN 167 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~ 167 (330)
|.+.++...|...|+...... |.|...|..+..+|...|.+..|.++|.++.... |+. +|.. ....-+..|.+.
T Consensus 572 yLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s-~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLS-KYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHh-HHHHHHHHHHHHHhhhHH
Confidence 666677777777777777665 6677777888888888888888888887776652 222 1211 122234456666
Q ss_pred HHHHHHHHHH
Q 037620 168 DAYRMMDEMR 177 (330)
Q Consensus 168 ~a~~~~~~~~ 177 (330)
++...+..+.
T Consensus 648 eald~l~~ii 657 (1238)
T KOG1127|consen 648 EALDALGLII 657 (1238)
T ss_pred HHHHHHHHHH
Confidence 6666555543
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=4.3e-05 Score=62.19 Aligned_cols=201 Identities=11% Similarity=0.091 Sum_probs=128.5
Q ss_pred CChHHHHHHHHHHhhCC--CCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHH
Q 037620 24 RHVERAQEVFDKMKKRR--FDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVE 101 (330)
Q Consensus 24 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 101 (330)
.++.++...-+.+...+ -.|+...+...+.+......-..+..++.+..+. . -.....-....+...|+.++|+.
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~-~~aa~YG~A~~~~~~~~~d~A~~ 327 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--G-GLAAQYGRALQTYLAGQYDEALK 327 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--c-chHHHHHHHHHHHHhcccchHHH
Confidence 34555666666665532 2345555555555444433333333333333221 1 22222223334556788888888
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhhCChhHHHHHHHHHHHcC
Q 037620 102 LFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPE-APTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180 (330)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (330)
.++.+.... |-|+.........+.+.++..+|.+.++++... .|+ ....-.+..++.+.|++.+|..+++......
T Consensus 328 ~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~ 404 (484)
T COG4783 328 LLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND 404 (484)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence 888877664 566666677778888888888888888888777 344 5566677788888888888888888877663
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 037620 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR 250 (330)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 250 (330)
+.|+..|..|.++|...|+..++..... ..+...|+++.|...+....+.
T Consensus 405 -p~dp~~w~~LAqay~~~g~~~~a~~A~A-------------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 405 -PEDPNGWDLLAQAYAELGNRAEALLARA-------------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -CCCchHHHHHHHHHHHhCchHHHHHHHH-------------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 4577888888888888887777655443 3355667777777777766654
No 131
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.57 E-value=5e-06 Score=67.77 Aligned_cols=125 Identities=15% Similarity=0.193 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 037620 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSL 266 (330)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 266 (330)
....++..+...++++.|..+++++.+. .|+. ...+++.+...++-.+|.+++.+..+.... +...+..-...+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fL 244 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 3344455555566666666666666552 1332 234555555666666666666666654332 445555555566
Q ss_pred hccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 037620 267 CHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKID 318 (330)
Q Consensus 267 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (330)
.+.++++.|+.+.+++.+.. +-+..+|..|+.+|...|+++.|...++.++
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 66666677777776666542 2344566666677777777777766666554
No 132
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.57 E-value=4.9e-06 Score=67.80 Aligned_cols=127 Identities=14% Similarity=0.115 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 037620 46 KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGL 125 (330)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (330)
..-..|+..+...++++.|+.+|+++.+.. |+ ....++..+...++-.+|.+++.+..... +.+......-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344556677777889999999999998773 44 34457777777888889999999988765 66777777778888
Q ss_pred hccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHH
Q 037620 126 GSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRK 178 (330)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (330)
.+.++++.|+++.+++.+.. +.+..+|..|..+|...|+++.|+-.++.+.-
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999999998873 44566899999999999999999988887653
No 133
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.56 E-value=0.00028 Score=58.40 Aligned_cols=120 Identities=10% Similarity=0.140 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHHhccCChhHHHHHH
Q 037620 201 TEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLP-VMHMYSTLINSLCHEDKLDDACKYF 279 (330)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 279 (330)
.+.....++++.......|+. +|...+....+..-+..|+.+|.+..+.+..+ ...++++++..+| .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 445555666666544555554 57778888888889999999999999887776 6778888888776 47778999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCC
Q 037620 280 QEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKT 323 (330)
Q Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (330)
+--+..- ..++..-...+.-+...++-..+..+|++....+.+
T Consensus 425 eLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 425 ELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 8765531 234444455677777888888888899888877544
No 134
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.55 E-value=9.2e-06 Score=57.30 Aligned_cols=127 Identities=17% Similarity=0.114 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC-CchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccH--HHHHHHH
Q 037620 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTE-PTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVM--HMYSTLI 263 (330)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~ 263 (330)
.|..++..+ ..++...+...++.+....+.. ........+...+...|++++|...|+.+......|+. .....+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 3666666666666666522211 11223334556666777777777777777665433221 2333455
Q ss_pred HHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHH
Q 037620 264 NSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQK 316 (330)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 316 (330)
..+...|++++|+..++..... ......+......+.+.|++++|...|++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666777777777777553322 23344555666677777777777777664
No 135
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=3.6e-05 Score=66.68 Aligned_cols=229 Identities=16% Similarity=0.119 Sum_probs=129.5
Q ss_pred HHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhC-C--------CCCChHHHHHHHHHH
Q 037620 20 LCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDD-G--------FEPDVVSYGIMINAH 90 (330)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--------~~~~~~~~~~ll~~~ 90 (330)
|...|+.+.|.+-++.++ +...|..|.+.|.+.++++-|.-.+-.|... | -.|+ .+=..+.-..
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 556688888877666554 3457888888888887777666555555322 0 1121 2222233334
Q ss_pred hccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHH
Q 037620 91 CSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAY 170 (330)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (330)
...|..++|..+|++-+.. ..|=..|-..|.+++|.++-+.-.+..+ ..||......+...++.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHH
Confidence 5678888888888877653 3344556677888888887664333221 245555666666677788887
Q ss_pred HHHHHHHH----------cC---------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH
Q 037620 171 RMMDEMRK----------CG---------IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMF 231 (330)
Q Consensus 171 ~~~~~~~~----------~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (330)
+.|++... .. -..|...|..-...+-..|+.+.|+.+|..... |-.+++..
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~ 948 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIK 948 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeE
Confidence 77765311 10 001222333333333345555555555554432 33445555
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 037620 232 CYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEML 283 (330)
Q Consensus 232 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (330)
|-.|+.++|-++-++- -|......+.+.|-..|++.+|..+|.+..
T Consensus 949 C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5566666665555442 134445556666666666666666666554
No 136
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.53 E-value=0.00052 Score=60.21 Aligned_cols=225 Identities=10% Similarity=0.119 Sum_probs=155.1
Q ss_pred HhhccChHHHHHHHHHHHhCCCCCChHHHHHHHH--HHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHH
Q 037620 55 WGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMIN--AHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132 (330)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (330)
....+++.+|.....++.+. .|+... ..++. ...+.|+.++|..+++.....+ +.|..|...+-.+|...++.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~~~-a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNALY-AKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCcHH-HHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhh
Confidence 34567889999999999887 345433 23333 4568899999999998887766 448899999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC----------HH
Q 037620 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGR----------TE 202 (330)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~ 202 (330)
+|..+|++.... .|+......+..+|.+.+.+.+-.+.--++-+. .+-....+-++++.....-. ..
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 999999999877 567777778888898888776654444444332 34455666666665544321 23
Q ss_pred HHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHH-HHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHH
Q 037620 203 EAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWD-EMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQE 281 (330)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 281 (330)
-|...++.+.++.|..-+..-...-...+...|++++|+.++. ...+.-..-+...-+.-+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4666777777655422222222222334567889999999994 444443333444445566777888999999998888
Q ss_pred HHhcC
Q 037620 282 MLDIG 286 (330)
Q Consensus 282 ~~~~~ 286 (330)
+.+.|
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 88876
No 137
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=7.7e-05 Score=64.77 Aligned_cols=156 Identities=12% Similarity=0.103 Sum_probs=101.1
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhC-C--------CCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCC
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKR-R--------FDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPD 79 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 79 (330)
+..+|..+.+.|.+.++++-|.-.+-.|... | -.|+ ..=....-.....|-+++|+.+|.+..+.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~----- 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY----- 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----
Confidence 4568999999999999999888777776542 1 1121 22222333346778899999999888753
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHh----------cC----
Q 037620 80 VVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKK----------RG---- 145 (330)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~~---- 145 (330)
..|=..|...|.|++|.++-+.-....+ ..||.....-+...++.+.|++.|++... ..
T Consensus 830 ----DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 830 ----DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred ----HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 2344556778999999888755333222 24566666666667778888877765321 10
Q ss_pred -----CCCChhhHHHHHHHHHhhCChhHHHHHHHHHH
Q 037620 146 -----FEPEAPTYNAVVGAYCWSMRINDAYRMMDEMR 177 (330)
Q Consensus 146 -----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (330)
-..|...|......+-..|+.+.|+.+|....
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 12244556666666667788888888887654
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.52 E-value=1.3e-05 Score=56.54 Aligned_cols=85 Identities=11% Similarity=0.056 Sum_probs=35.0
Q ss_pred HHHhhccChHHHHHHHHHHHhCCCCCCh--HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCc
Q 037620 53 EGWGQQKNLLSMNEVYREMKDDGFEPDV--VSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKR 130 (330)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 130 (330)
..+...|++++|...|+........|+. .....+...+...|++++|+..++..... ......+.....+|.+.|+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCC
Confidence 3444445555555555554444311111 12222344444445555555444332211 1223333344444444444
Q ss_pred HHHHHHHHH
Q 037620 131 LSEALQFFG 139 (330)
Q Consensus 131 ~~~a~~~~~ 139 (330)
+++|...|+
T Consensus 134 ~~~A~~~y~ 142 (145)
T PF09976_consen 134 YDEARAAYQ 142 (145)
T ss_pred HHHHHHHHH
Confidence 444444444
No 139
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=0.00023 Score=63.37 Aligned_cols=241 Identities=12% Similarity=0.116 Sum_probs=146.2
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLIN 123 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (330)
.+..|..+..+-.+.|...+|++-|-+. .|+..|..++....+.|.+++..+.+....+..-.|... +.|+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 3456777888777888888887766443 267788888999999999999888887776655444443 56777
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHH
Q 037620 124 GLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEE 203 (330)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (330)
+|++.++..+.++++. -|+......+..-|...+.++.|.-++.. ...|..+...+...|+++.
T Consensus 1175 AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHH
Confidence 8888888777666542 35555555555556666666655544432 2233333444444444444
Q ss_pred HHHHHHHh------------------------hcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHH
Q 037620 204 AYSVFKRM------------------------SRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMY 259 (330)
Q Consensus 204 a~~~~~~~------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 259 (330)
|.+.-++. .. .++.....-...++..|...|-+++...+++......- .....|
T Consensus 1239 AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCG-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLER-AHMgmf 1316 (1666)
T KOG0985|consen 1239 AVDAARKANSTKTWKEVCFACVDKEEFRLAQICG-LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLER-AHMGMF 1316 (1666)
T ss_pred HHHHhhhccchhHHHHHHHHHhchhhhhHHHhcC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhH-HHHHHH
Confidence 33322221 11 12223344456788888888888888888877554321 244567
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHH
Q 037620 260 STLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKI 317 (330)
Q Consensus 260 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 317 (330)
+.|.-.|.+-. +++..+-++-.- +....-.+++++....-|.+..-++.+-
T Consensus 1317 TELaiLYskyk-p~km~EHl~LFw------sRvNipKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1317 TELAILYSKYK-PEKMMEHLKLFW------SRVNIPKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred HHHHHHHHhcC-HHHHHHHHHHHH------HhcchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77776666533 444444433332 2222346788888888787776666544
No 140
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=0.00041 Score=57.30 Aligned_cols=202 Identities=13% Similarity=0.107 Sum_probs=139.7
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHH-------HH
Q 037620 85 IMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNA-------VV 157 (330)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~ 157 (330)
.+.++..+..++..|++.+....+.. .+..-++....+|...|.+..+........+.|.. ...-|+. +.
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhh
Confidence 44455555566667777777666654 45555666777888888888887777776666532 2222333 33
Q ss_pred HHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHH-------------------------HHHHHHHcCCHHHHHHHHHHhh
Q 037620 158 GAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDI-------------------------VLHHLIKAGRTEEAYSVFKRMS 212 (330)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------------------l~~~~~~~~~~~~a~~~~~~~~ 212 (330)
.+|.+.++++.+...|.+.......|+..+-.. -...+.+.|++..|...|.++.
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 456667888889888887665443333322111 1234668899999999999988
Q ss_pred cCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChh
Q 037620 213 RKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQ 292 (330)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 292 (330)
.. .+-|...|....-+|.+.|.+..|+.-.+..++.+.. ....|..=..++....+++.|.+.|++.++.+ |+..
T Consensus 386 kr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~ 460 (539)
T KOG0548|consen 386 KR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNA 460 (539)
T ss_pred hc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhH
Confidence 73 4667889999999999999999999988888877433 44555555667777889999999999998764 4444
Q ss_pred hH
Q 037620 293 LF 294 (330)
Q Consensus 293 ~~ 294 (330)
-+
T Consensus 461 e~ 462 (539)
T KOG0548|consen 461 EA 462 (539)
T ss_pred HH
Confidence 33
No 141
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.44 E-value=7.7e-06 Score=67.03 Aligned_cols=124 Identities=14% Similarity=0.091 Sum_probs=81.1
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHH
Q 037620 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGT-EPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMY 259 (330)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 259 (330)
.+.+......++..+....+.+.+..++.+....... ..-..|..++++.|...|..+.+..+++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445556666666666666677777777766652211 122234457777777777777777777777777777777777
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 037620 260 STLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDE 304 (330)
Q Consensus 260 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 304 (330)
+.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777776666555666666555555554
No 142
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.43 E-value=4.3e-07 Score=46.47 Aligned_cols=33 Identities=48% Similarity=0.859 Sum_probs=18.5
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC
Q 037620 12 DFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPD 44 (330)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 44 (330)
+||++|.+|++.|++++|.++|+.|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 143
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.41 E-value=5.5e-07 Score=45.71 Aligned_cols=32 Identities=28% Similarity=0.553 Sum_probs=17.1
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhhCCCCC
Q 037620 12 DFNRLIDTLCKSRHVERAQEVFDKMKKRRFDP 43 (330)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 43 (330)
+|+.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 144
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.40 E-value=0.00011 Score=63.20 Aligned_cols=133 Identities=17% Similarity=0.301 Sum_probs=75.6
Q ss_pred HhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHH
Q 037620 161 CWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240 (330)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 240 (330)
.....|.+|+.+++.+..+.. -..-|..+...|...|+++.|.++|.+.- .++-.|.+|.+.|+|..|
T Consensus 743 i~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHHHH
Confidence 344556666666666655432 23345556666666677777666665431 233445666677777766
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHH
Q 037620 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQK 316 (330)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 316 (330)
.++-.+.. |.......|-.-..-+-..|++.+|.+++-.. | .|+ ..+..|-+.|..+..+++.++
T Consensus 811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence 66655432 33334445555555556666666666665433 2 233 245667777777777666654
No 145
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.38 E-value=1.6e-05 Score=65.20 Aligned_cols=123 Identities=15% Similarity=0.122 Sum_probs=87.5
Q ss_pred CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhH
Q 037620 76 FEPDVVSYGIMINAHCSAKRYDEAVELFREMEAT--NCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTY 153 (330)
Q Consensus 76 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (330)
.+.+......+++.+....+.+.+..++-++... ....-+.|..++++.|.+.|..+.++.++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3456666777777777777777777777777654 22233445567788888888888888888877778888888888
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHc
Q 037620 154 NAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKA 198 (330)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (330)
+.|+..+.+.|++..|.++...|..++...+..|+...+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888877777766665666666555555544
No 146
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.37 E-value=8.3e-07 Score=45.38 Aligned_cols=33 Identities=30% Similarity=0.642 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHhCCCCCC
Q 037620 47 SYTILLEGWGQQKNLLSMNEVYREMKDDGFEPD 79 (330)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 79 (330)
+|++++.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777776665
No 147
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.36 E-value=9e-07 Score=44.91 Aligned_cols=33 Identities=24% Similarity=0.506 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCC
Q 037620 46 KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEP 78 (330)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 78 (330)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355666666666666666666666666555554
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.35 E-value=3.1e-05 Score=52.56 Aligned_cols=99 Identities=8% Similarity=-0.052 Sum_probs=50.8
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhhCCC--CCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCC--CChHHHHHHH
Q 037620 12 DFNRLIDTLCKSRHVERAQEVFDKMKKRRF--DPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFE--PDVVSYGIMI 87 (330)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll 87 (330)
++..+...+.+.|++++|.+.|+.+.+... +.....+..+..++.+.|+++.|...|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555555566666666666666554210 011234444555556666666666666665543211 1133444555
Q ss_pred HHHhccCcHHHHHHHHHHHHhcC
Q 037620 88 NAHCSAKRYDEAVELFREMEATN 110 (330)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~ 110 (330)
.++...|+.++|.+.++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 55555566666666666555543
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.33 E-value=1.8e-05 Score=51.06 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=52.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 037620 225 EIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDE 304 (330)
Q Consensus 225 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 304 (330)
..+...+...|++++|...+++..+.... +...+..+...+...+++++|.+.+++..... +.+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 34445555566666666666665554322 23445555556666666666666666665443 22334555556666666
Q ss_pred CchHHHHHHHHHHHhc
Q 037620 305 GMEETAVVLAQKIDKL 320 (330)
Q Consensus 305 g~~~~a~~~~~~~~~~ 320 (330)
|++++|...++...+.
T Consensus 82 ~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 82 GKYEEALEAYEKALEL 97 (100)
T ss_pred HhHHHHHHHHHHHHcc
Confidence 6666666666655543
No 150
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.31 E-value=7e-05 Score=52.12 Aligned_cols=94 Identities=6% Similarity=-0.038 Sum_probs=56.5
Q ss_pred HHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhcc
Q 037620 49 TILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSE 128 (330)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (330)
-.+...+...|++++|.++|+.+...++ -+..-|..|..++-..|++++|+..|......+ +.++..+..+..++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 3344445566666666666666665532 244555556666666666666666666666555 45566666666666666
Q ss_pred CcHHHHHHHHHHHHhc
Q 037620 129 KRLSEALQFFGQSKKR 144 (330)
Q Consensus 129 ~~~~~a~~~~~~~~~~ 144 (330)
|+.+.|.+.|+..+..
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6666666666655543
No 151
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.30 E-value=0.00033 Score=62.24 Aligned_cols=218 Identities=11% Similarity=0.050 Sum_probs=136.7
Q ss_pred cHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHH
Q 037620 95 RYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMD 174 (330)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 174 (330)
+...++..|-+..+.. +.-...|..|...|...-+...|.+.|....+.+ ..+..........|+...+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3666777666665554 3445678888888888888888888888887775 4466777788888888888888888733
Q ss_pred HHHHcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 037620 175 EMRKCG-IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL 253 (330)
Q Consensus 175 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 253 (330)
..-+.. ...-...|....-.|...++...|..-|+...+ -.+.|...|..+..+|..+|++..|.++|.+....++.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 322211 001112233344456677788888888887765 34456778888888888888888888888887765433
Q ss_pred ccHHHHHHHHHHHhccCChhHHHHHHHHHHhc------CCCCChhhHHHHHHHHHhcCchHHHHHHHHHH
Q 037620 254 PVMHMYSTLINSLCHEDKLDDACKYFQEMLDI------GIRPPGQLFSNLKQALRDEGMEETAVVLAQKI 317 (330)
Q Consensus 254 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 317 (330)
.....|- ....-+..|.+.+|+..+...... +..--..++......+.-.|-..++..++++-
T Consensus 629 s~y~~fk-~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks 697 (1238)
T KOG1127|consen 629 SKYGRFK-EAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS 697 (1238)
T ss_pred hHHHHHH-HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 1111111 122335678888888877766531 11122344444444444455555555555443
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.29 E-value=2.4e-06 Score=53.90 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=31.7
Q ss_pred cChHHHHHHHHHHHhCCCC-CChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHH
Q 037620 59 KNLLSMNEVYREMKDDGFE-PDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQF 137 (330)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 137 (330)
|+++.|+.+++++.+.... ++...+..+..++.+.|++++|+.++++ .+.+ +.+......+..++.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4444455555544444211 1222333344445555555555555544 2221 11222223334444455555555444
Q ss_pred HH
Q 037620 138 FG 139 (330)
Q Consensus 138 ~~ 139 (330)
++
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 153
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.28 E-value=2.4e-06 Score=53.90 Aligned_cols=81 Identities=16% Similarity=0.236 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHHHhCCCC-ccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHH
Q 037620 234 NAQVDMAMRIWDEMKARGVL-PVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVV 312 (330)
Q Consensus 234 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 312 (330)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..++++ .+.+ ..+......+.+++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666666666666655332 2334444466666677777777776666 2222 1223344445666667777777766
Q ss_pred HHHH
Q 037620 313 LAQK 316 (330)
Q Consensus 313 ~~~~ 316 (330)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.28 E-value=5e-05 Score=51.47 Aligned_cols=99 Identities=13% Similarity=0.046 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC--ccHHHHHHHH
Q 037620 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGT-EPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL--PVMHMYSTLI 263 (330)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 263 (330)
++..+...+.+.|++++|...+..+...... ......+..+..++...|+++.|...++.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445555566666666666666666542111 111234445566666666666666666666553221 1133455555
Q ss_pred HHHhccCChhHHHHHHHHHHhc
Q 037620 264 NSLCHEDKLDDACKYFQEMLDI 285 (330)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~~~~~ 285 (330)
.++.+.|+.++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5666666666666666666654
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.27 E-value=2.9e-05 Score=50.07 Aligned_cols=88 Identities=14% Similarity=0.120 Sum_probs=34.1
Q ss_pred HHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcH
Q 037620 52 LEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRL 131 (330)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (330)
...+...|++++|...++...+.. +.+...+..+..++...+++++|.+.++...... +.+..++..+...+...|++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhH
Confidence 333344444444444444443331 1122333333344444444444444444433332 22223333333444444444
Q ss_pred HHHHHHHHHH
Q 037620 132 SEALQFFGQS 141 (330)
Q Consensus 132 ~~a~~~~~~~ 141 (330)
+.|...+...
T Consensus 85 ~~a~~~~~~~ 94 (100)
T cd00189 85 EEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 156
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.23 E-value=3.9e-05 Score=49.53 Aligned_cols=76 Identities=13% Similarity=0.347 Sum_probs=49.5
Q ss_pred HHHHHhhccChHHHHHHHHHHHhCCC-CCChHHHHHHHHHHhccC--------cHHHHHHHHHHHHhcCCCCChHHHHHH
Q 037620 51 LLEGWGQQKNLLSMNEVYREMKDDGF-EPDVVSYGIMINAHCSAK--------RYDEAVELFREMEATNCKPSPHIFCTL 121 (330)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (330)
.|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ..-..+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34445555777777777777777777 677777777776665532 233456666777766677777777776
Q ss_pred HHHHh
Q 037620 122 INGLG 126 (330)
Q Consensus 122 ~~~~~ 126 (330)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 66554
No 157
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.22 E-value=0.0013 Score=50.73 Aligned_cols=185 Identities=12% Similarity=-0.013 Sum_probs=103.7
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHH---HHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHH
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSY---GIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (330)
+...+-.....+...|++++|.+.|+.+...... +...- -.++.++.+.+++++|...++++.+........-+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3333334455567789999999999999887322 22222 3566788899999999999999987641111122222
Q ss_pred HHHHHh--cc---------------Cc---HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcC
Q 037620 121 LINGLG--SE---------------KR---LSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180 (330)
Q Consensus 121 l~~~~~--~~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (330)
.+.+.+ .. .+ ...|.+.|+.+++. -|+. .-..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH-
Confidence 222221 11 11 23455666666655 2332 1223333333333221
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 037620 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPG-TEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMK 248 (330)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 248 (330)
=...-..+..-|.+.|.+..|..-++.+.++.. .+........++.+|...|..++|.++...+.
T Consensus 174 ---la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ---LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ---HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 001111345567777777777777777765322 22234455666777777777777777666554
No 158
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.22 E-value=3.1e-05 Score=50.00 Aligned_cols=79 Identities=14% Similarity=0.359 Sum_probs=67.7
Q ss_pred HHHHHHHHccCChHHHHHHHHHHhhCCC-CCChHHHHHHHHHHhhcc--------ChHHHHHHHHHHHhCCCCCChHHHH
Q 037620 14 NRLIDTLCKSRHVERAQEVFDKMKKRRF-DPDIKSYTILLEGWGQQK--------NLLSMNEVYREMKDDGFEPDVVSYG 84 (330)
Q Consensus 14 ~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (330)
..-|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|++|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456667777999999999999999999 899999999998876653 3456788999999999999999999
Q ss_pred HHHHHHhc
Q 037620 85 IMINAHCS 92 (330)
Q Consensus 85 ~ll~~~~~ 92 (330)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987754
No 159
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.21 E-value=7.8e-05 Score=54.09 Aligned_cols=81 Identities=12% Similarity=-0.032 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCC--ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 037620 45 IKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEP--DVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLI 122 (330)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (330)
...|..+...+...|++++|+..|+........+ ...++..+..++...|++++|+..+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4455666666666777777777777776542221 12356666667777777777777777766543 33444455555
Q ss_pred HHHh
Q 037620 123 NGLG 126 (330)
Q Consensus 123 ~~~~ 126 (330)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5554
No 160
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.21 E-value=7.1e-05 Score=59.05 Aligned_cols=143 Identities=10% Similarity=0.066 Sum_probs=86.6
Q ss_pred hhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHhhcCCCCCCchHHHHHHHH
Q 037620 151 PTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIK-AGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVR 229 (330)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 229 (330)
.+|..+++...+.+..+.|..+|.+..+.+ ..+...|......-.. .++.+.|..+|+...+. ...+...|..-+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 356677777777777788888887777532 2234444444444233 45666688888877763 4445566677777
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCcc---HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 037620 230 MFCYNAQVDMAMRIWDEMKARGVLPV---MHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQ 299 (330)
Q Consensus 230 ~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 299 (330)
.+...++.+.|..+|++.... +.++ ...|...+..=.+.|+.+.+.++.+++.+. -|+...+..+..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 777777888888888777655 2222 246777777777777777777777777764 344333333333
No 161
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.19 E-value=9.7e-05 Score=51.42 Aligned_cols=98 Identities=13% Similarity=0.088 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 037620 80 VVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGA 159 (330)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (330)
....-.+...+...|++++|.++|+-+...+ +.+..-|..|..++-..|++++|+..|....... +.++..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3344456666778888888888888888776 6677778888888888888888888888888876 4577778888888
Q ss_pred HHhhCChhHHHHHHHHHHHc
Q 037620 160 YCWSMRINDAYRMMDEMRKC 179 (330)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~ 179 (330)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888877663
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.18 E-value=8.9e-05 Score=60.66 Aligned_cols=92 Identities=8% Similarity=-0.040 Sum_probs=59.9
Q ss_pred HHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcH
Q 037620 17 IDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRY 96 (330)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (330)
...+...|++++|++.|+..++.. +.+...|..+..++...|++++|+..+++++... +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 344556677777777777776643 3355666666666777777777777777776653 23555666666677777777
Q ss_pred HHHHHHHHHHHhcC
Q 037620 97 DEAVELFREMEATN 110 (330)
Q Consensus 97 ~~a~~~~~~~~~~~ 110 (330)
++|+..|++..+.+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777766654
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.16 E-value=0.00012 Score=59.87 Aligned_cols=92 Identities=9% Similarity=-0.012 Sum_probs=73.5
Q ss_pred HHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcH
Q 037620 52 LEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRL 131 (330)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (330)
...+...|+++.|++.|.++++.. +-+...|..+..++...|++++|+..+++++... +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 455667788888888888888775 3367777778888888888888888888888776 66777888888888888888
Q ss_pred HHHHHHHHHHHhcC
Q 037620 132 SEALQFFGQSKKRG 145 (330)
Q Consensus 132 ~~a~~~~~~~~~~~ 145 (330)
++|...|++..+..
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888888763
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.14 E-value=0.0003 Score=51.27 Aligned_cols=91 Identities=14% Similarity=0.007 Sum_probs=64.2
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCC--hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHH
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPD--VVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTL 121 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (330)
....+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 344566777777888888888888888876533222 3567777888888888888888888887764 4456666677
Q ss_pred HHHHhccCcHHHHH
Q 037620 122 INGLGSEKRLSEAL 135 (330)
Q Consensus 122 ~~~~~~~~~~~~a~ 135 (330)
..++...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 77777766654433
No 165
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.13 E-value=0.00014 Score=57.41 Aligned_cols=129 Identities=13% Similarity=0.158 Sum_probs=68.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHH-HhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 037620 82 SYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING-LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAY 160 (330)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (330)
+|..+++...+.+..+.|..+|.+..+.+ ..+..+|...... |...++.+.|.++|+...+. ++.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45566666666666666666666665433 3334444444433 22244555566666666554 344555566666666
Q ss_pred HhhCChhHHHHHHHHHHHcCCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 161 CWSMRINDAYRMMDEMRKCGIGPNT---RTYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
.+.++.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+..+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666543 22222 3555555555566666666666665554
No 166
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.09 E-value=5.3e-06 Score=40.93 Aligned_cols=29 Identities=45% Similarity=0.762 Sum_probs=16.8
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhhCC
Q 037620 12 DFNRLIDTLCKSRHVERAQEVFDKMKKRR 40 (330)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 40 (330)
+||.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45556666666666666666666555543
No 167
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.06 E-value=0.0028 Score=48.84 Aligned_cols=58 Identities=12% Similarity=0.131 Sum_probs=43.0
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhc--CCCCChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 037620 261 TLINSLCHEDKLDDACKYFQEMLDI--GIRPPGQLFSNLKQALRDEGMEETAVVLAQKID 318 (330)
Q Consensus 261 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (330)
.+.+-|.+.|.+..|..-++.+++. +.+........+..+|...|..++|..+.+.+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4556788888888888888888863 223345566678888888999888888776554
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.06 E-value=0.00027 Score=51.47 Aligned_cols=92 Identities=8% Similarity=-0.010 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 037620 185 TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPT-VSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLI 263 (330)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 263 (330)
...+..+...+...|++++|...|++..+.....++ ...+..+...+...|++++|...+++..+.... +...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 345666777777888888888888887652222222 356777788888888888888888888776433 455666667
Q ss_pred HHHhccCChhHHHH
Q 037620 264 NSLCHEDKLDDACK 277 (330)
Q Consensus 264 ~~~~~~~~~~~a~~ 277 (330)
.++...|+...+..
T Consensus 114 ~~~~~~g~~~~a~~ 127 (172)
T PRK02603 114 VIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHcCChHhHhh
Confidence 77777666444333
No 169
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=0.00093 Score=53.61 Aligned_cols=262 Identities=14% Similarity=0.012 Sum_probs=144.6
Q ss_pred HHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHH
Q 037620 53 EGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132 (330)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (330)
..+.+..++..|+..+...++..+. +..-|..-+..+...+++++++--.++-.+.. +-........-+++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHH
Confidence 3455666777788888887777433 45555555556666677777666555544332 112223333334444444444
Q ss_pred HHHHHHHH---------------HHhcC-CCCChhhHHHH-HHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHH--
Q 037620 133 EALQFFGQ---------------SKKRG-FEPEAPTYNAV-VGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLH-- 193 (330)
Q Consensus 133 ~a~~~~~~---------------~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-- 193 (330)
+|.+.++. ..... -+|...++..+ ..++...|+.++|..+--...+.. ....+...++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~ 211 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGL 211 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhccc
Confidence 44433331 11111 11223334333 234556677787777666665542 1122222332
Q ss_pred HHHHcCCHHHHHHHHHHhhcCCCCCCchHHH-------------HHHHHHHHhCCCHHHHHHHHHHHHhC---CCCccHH
Q 037620 194 HLIKAGRTEEAYSVFKRMSRKPGTEPTVSTY-------------EIVVRMFCYNAQVDMAMRIWDEMKAR---GVLPVMH 257 (330)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~ 257 (330)
++.-.++.+.|...|++... ..|+...- ..-..-..+.|.+..|.+.|.+.+.. +..|+..
T Consensus 212 ~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred ccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 33345677777777777654 33332211 11123345678888888888887754 3456666
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCCC
Q 037620 258 MYSTLINSLCHEDKLDDACKYFQEMLDIGIRPP-GQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTP 324 (330)
Q Consensus 258 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 324 (330)
.|.....+..+.|+..+|+.--++.++.+ +. ...+..-..++...++|++|.+-+++..+...++
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~ 354 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDC 354 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 67777777778888888888777776432 11 2233333445666778888888887777665553
No 170
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.04 E-value=0.004 Score=49.89 Aligned_cols=109 Identities=14% Similarity=0.138 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 037620 186 RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINS 265 (330)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (330)
.+.+..+.-+...|+...|..+-.+.. .|+...|...+.+++..++|++...+... + + ++.-|..++.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k---K-sPIGyepFv~~ 246 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEKFAKS--K---K-SPIGYEPFVEA 246 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C---C-CCCChHHHHHH
Confidence 455566777788899988888877653 27888899999999999999988876543 1 1 34568999999
Q ss_pred HhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHH
Q 037620 266 LCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQ 315 (330)
Q Consensus 266 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 315 (330)
|.+.|+..+|..++.++ ++ ..-+..|.+.|++.+|.+..-
T Consensus 247 ~~~~~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHCCCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999888772 11 345566777777777765543
No 171
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.04 E-value=0.00023 Score=51.67 Aligned_cols=96 Identities=11% Similarity=0.010 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 037620 186 RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEP-TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLIN 264 (330)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 264 (330)
..+..+...+...|++++|...+++........+ ...++..+...+...|++++|...++........ ...++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH
Confidence 4445555566666777777777776654211111 1235666666777777777777777766654322 2344444444
Q ss_pred HHh-------ccCChhHHHHHHHHH
Q 037620 265 SLC-------HEDKLDDACKYFQEM 282 (330)
Q Consensus 265 ~~~-------~~~~~~~a~~~~~~~ 282 (330)
.+. ..|+++.|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 444 666666555544443
No 172
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.04 E-value=0.0011 Score=57.02 Aligned_cols=65 Identities=17% Similarity=0.290 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 037620 184 NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG 251 (330)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 251 (330)
+...+..+...+...|++++|...+++... ..|+...|..+...+...|+.++|.+.+++....+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345555555555556666666666666655 33455566666666666666666666666665543
No 173
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.03 E-value=0.001 Score=57.13 Aligned_cols=145 Identities=12% Similarity=0.056 Sum_probs=97.8
Q ss_pred CCCChhhHHHHHHHHHhhC-----ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcC--------CHHHHHHHHHHhh
Q 037620 146 FEPEAPTYNAVVGAYCWSM-----RINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAG--------RTEEAYSVFKRMS 212 (330)
Q Consensus 146 ~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~ 212 (330)
.+.+...|...+++..... +...|..+|++..+.... ....+..+..++.... +...+.+...+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4567788888888755432 366889999999886422 3445555444443221 2234444444433
Q ss_pred cCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChh
Q 037620 213 RKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQ 292 (330)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 292 (330)
.......+...|..+.-.....|++++|...+++..+.+ |+...|..+...+...|+.++|...+++.... .|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCc
Confidence 322244455677777777777899999999999998876 57788999999999999999999999998854 45555
Q ss_pred hHH
Q 037620 293 LFS 295 (330)
Q Consensus 293 ~~~ 295 (330)
+|.
T Consensus 488 t~~ 490 (517)
T PRK10153 488 TLY 490 (517)
T ss_pred hHH
Confidence 543
No 174
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.02 E-value=8.1e-06 Score=40.25 Aligned_cols=29 Identities=28% Similarity=0.586 Sum_probs=16.6
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHhCC
Q 037620 47 SYTILLEGWGQQKNLLSMNEVYREMKDDG 75 (330)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 75 (330)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.96 E-value=0.0014 Score=51.98 Aligned_cols=132 Identities=12% Similarity=0.161 Sum_probs=68.5
Q ss_pred HHHHHHHHHhcc-CcHHHHHHHHHHHHhc----CCC-CChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCC-----CcH
Q 037620 117 IFCTLINGLGSE-KRLSEALQFFGQSKKR----GFE-PEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIG-----PNT 185 (330)
Q Consensus 117 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~ 185 (330)
++..+...|... |+++.|.+.|.+..+. +.+ .-...+..+...+.+.|++++|.++|+++...... .+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 444555666666 7777777777665432 210 01234556667777777888888887777653221 111
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHhhcC-CCCCCc--hHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Q 037620 186 -RTYDIVLHHLIKAGRTEEAYSVFKRMSRK-PGTEPT--VSTYEIVVRMFCYN--AQVDMAMRIWDEMK 248 (330)
Q Consensus 186 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~--~~~~~~l~~~~~~~--~~~~~a~~~~~~~~ 248 (330)
..+...+-++...|++-.|...+++.... ++...+ ......|+.++-.. ..++.+..-|+.+.
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 12333444566677788888888776642 222222 23445556655332 23444444444433
No 176
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.94 E-value=0.003 Score=45.09 Aligned_cols=135 Identities=8% Similarity=0.001 Sum_probs=88.7
Q ss_pred CCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHH
Q 037620 147 EPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEI 226 (330)
Q Consensus 147 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 226 (330)
.|++..-..|..+....|+..+|...|++...--..-|......+.++....+++..|...++.+.+-....-++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45666666677777788888888888877766545556777777777777888888888888877653322223334456
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 037620 227 VVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEML 283 (330)
Q Consensus 227 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (330)
+.+.+...|.+..|+.-|+.....- |+...-......+.+.|+.+++..-+..+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 6777888888888888888877653 333333334445566776666655444443
No 177
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.93 E-value=5.6e-05 Score=45.38 Aligned_cols=51 Identities=24% Similarity=0.277 Sum_probs=25.2
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 93 AKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
.|++++|+++|+++.... |-+..++..+..+|.+.|++++|.++++++...
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445555555555554443 334444445555555555555555555555444
No 178
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.90 E-value=0.00031 Score=51.45 Aligned_cols=88 Identities=17% Similarity=0.302 Sum_probs=63.0
Q ss_pred ChHHHHHHHHHHhh-----ccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhcc----------------CcHHHHHHH
Q 037620 44 DIKSYTILLEGWGQ-----QKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSA----------------KRYDEAVEL 102 (330)
Q Consensus 44 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------------~~~~~a~~~ 102 (330)
+-.+|..+++.+.+ .|..+-....+..|.+-|+.-|..+|+.|+..+=+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 55556666555543 356666666677777777777777777777765542 245678899
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHhccCcH
Q 037620 103 FREMEATNCKPSPHIFCTLINGLGSEKRL 131 (330)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (330)
+++|...|+-||..++..+++.+.+.+..
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 99999999999999999999998877653
No 179
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.90 E-value=0.0003 Score=53.96 Aligned_cols=103 Identities=15% Similarity=0.191 Sum_probs=77.4
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhH
Q 037620 89 AHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIND 168 (330)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (330)
-..+.+++++|+..|.+.++.. |.|...|..-..+|++.|.++.|.+-.+..+..+ +....+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 3556788888888888888876 6777777888888888888888888888777764 3345678888888888888888
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 037620 169 AYRMMDEMRKCGIGPNTRTYDIVLHHL 195 (330)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (330)
|.+.|++..+ +.|+..+|-.=+...
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 8888887776 456666666555444
No 180
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.89 E-value=9.1e-05 Score=44.60 Aligned_cols=63 Identities=21% Similarity=0.270 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-chHHHHHHHHHHHhc
Q 037620 257 HMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG-MEETAVVLAQKIDKL 320 (330)
Q Consensus 257 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~ 320 (330)
..|..+...+...|++++|+..|++.++.. +.+...|..+..++.+.| ++++|.+.+++..+.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 445555555555555555555555555443 224445555555555555 455555555554443
No 181
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.89 E-value=0.0011 Score=52.61 Aligned_cols=199 Identities=13% Similarity=0.157 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhhCChhHHHHHHHHHHH----cCCCCc-
Q 037620 115 PHIFCTLINGLGSEKRLSEALQFFGQSKKR----GFEP-EAPTYNAVVGAYCWSMRINDAYRMMDEMRK----CGIGPN- 184 (330)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~- 184 (330)
...|......|...|++++|.+.|.+.... +-+. -...|.....+|. ..++++|...+++... .| .|+
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~A~~~y~~~G-~~~~ 112 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIECYEKAIEIYREAG-RFSQ 112 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHCT--HHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHhcC-cHHH
Confidence 345666677777778888888777765332 1110 1122333333333 3377777777766543 22 112
Q ss_pred -HHHHHHHHHHHHHc-CCHHHHHHHHHHhhcC---CCC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-----
Q 037620 185 -TRTYDIVLHHLIKA-GRTEEAYSVFKRMSRK---PGT-EPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL----- 253 (330)
Q Consensus 185 -~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~---~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----- 253 (330)
...+..+...|... |+++.|.+.|++..+- .+. ..-..++..+...+.+.|++++|.++|+++......
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~ 192 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLK 192 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccc
Confidence 23455555566565 6777777777665431 110 011234455566666777777777777766543221
Q ss_pred ccHH-HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhh------HHHHHHHHHhcCchHHHHHHHHHHH
Q 037620 254 PVMH-MYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQL------FSNLKQALRDEGMEETAVVLAQKID 318 (330)
Q Consensus 254 ~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (330)
.+.. .|-..+-++...||...|.+.+++.... .|+... ...|+.+ .+.||.+.....+.+..
T Consensus 193 ~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~--~~~F~~s~E~~~~~~l~~A-~~~~D~e~f~~av~~~d 261 (282)
T PF14938_consen 193 YSAKEYFLKAILCHLAMGDYVAARKALERYCSQ--DPSFASSREYKFLEDLLEA-YEEGDVEAFTEAVAEYD 261 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT--STTSTTSHHHHHHHHHHHH-HHTT-CCCHHHHCHHHT
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHH-HHhCCHHHHHHHHHHHc
Confidence 1121 1222333455566777777777666532 344422 2223333 23455555555444443
No 182
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.88 E-value=0.00012 Score=44.02 Aligned_cols=63 Identities=16% Similarity=0.159 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccC-cHHHHHHHHHHHHh
Q 037620 80 VVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEK-RLSEALQFFGQSKK 143 (330)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 143 (330)
..+|..+...+...|++++|+..|++.++.+ +.+...|..+..+|...| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3445555555555555555555555555554 445555555555555555 45555555555544
No 183
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.87 E-value=0.00031 Score=53.86 Aligned_cols=117 Identities=18% Similarity=0.224 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHH
Q 037620 98 EAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMR 177 (330)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (330)
+....-++++..| +-..+.+++.+|+..|.+.++.. +.|...|..-..+|.+.|.++.|++-.+..+
T Consensus 76 e~~~~AE~LK~eG------------N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al 142 (304)
T KOG0553|consen 76 EDKALAESLKNEG------------NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESAL 142 (304)
T ss_pred hHHHHHHHHHHHH------------HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3455556666655 45667899999999999999884 4567777788889999999999998888887
Q ss_pred HcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH
Q 037620 178 KCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMF 231 (330)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (330)
..+. -...+|..|..+|...|++++|.+.|++..+ +.|+-.+|-.=+...
T Consensus 143 ~iDp-~yskay~RLG~A~~~~gk~~~A~~aykKaLe---ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 143 SIDP-HYSKAYGRLGLAYLALGKYEEAIEAYKKALE---LDPDNESYKSNLKIA 192 (304)
T ss_pred hcCh-HHHHHHHHHHHHHHccCcHHHHHHHHHhhhc---cCCCcHHHHHHHHHH
Confidence 7532 2457899999999999999999999998876 667666665555443
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.87 E-value=0.00012 Score=43.39 Aligned_cols=56 Identities=23% Similarity=0.331 Sum_probs=28.6
Q ss_pred HHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 88 NAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
..+...|++++|.+.|+++.+.. |-+...+..+..++...|++++|...|+++.+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445555555555555555544 344555555555555555555555555555443
No 185
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.86 E-value=0.00049 Score=50.43 Aligned_cols=100 Identities=9% Similarity=0.196 Sum_probs=78.9
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHhc-----cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhcc-----------
Q 037620 65 NEVYREMKDDGFEPDVVSYGIMINAHCS-----AKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSE----------- 128 (330)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------- 128 (330)
...|+..... ..+..+|..++..+.+ .|..+-....+..|.+-|+.-|..+|+.|++++=+.
T Consensus 34 ~~~f~~~~~~--~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 34 EELFERAPGQ--AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred HHHHHHHhhc--cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 3445554322 3477777777777664 467788888889999999999999999999988552
Q ss_pred -----CcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCh
Q 037620 129 -----KRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRI 166 (330)
Q Consensus 129 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (330)
.+-+-|++++++|...|+.||..++..++..+.+.+..
T Consensus 112 F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred hccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 24577999999999999999999999999999877643
No 186
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.0013 Score=49.68 Aligned_cols=147 Identities=12% Similarity=0.038 Sum_probs=110.9
Q ss_pred hHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHH
Q 037620 26 VERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFRE 105 (330)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 105 (330)
.+..+++|+.=. ...-+.++..+...+.+.-...++.+.++...+.++.....|.+.-.+.|+.+.|...|+.
T Consensus 165 ~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ 237 (366)
T KOG2796|consen 165 EESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQD 237 (366)
T ss_pred hhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 355566665433 3456777888888899999999999999987677888889999999999999999999998
Q ss_pred HHhcCCCCChHHHHHH-----HHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcC
Q 037620 106 MEATNCKPSPHIFCTL-----INGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180 (330)
Q Consensus 106 ~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (330)
..+..-+.+..+++.+ ...|.-.+++..|...+.++...+ +.++...|.-.-+..-.|+...|.+.++.|.+..
T Consensus 238 vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 238 VEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred HHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 7765434554444443 445677888999999998888775 3455555555555556789999999999998864
No 187
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.84 E-value=0.0016 Score=43.73 Aligned_cols=92 Identities=12% Similarity=-0.017 Sum_probs=52.4
Q ss_pred HHHHHHccCChHHHHHHHHHHhhCCCCCC--hHHHHHHHHHHhhccChHHHHHHHHHHHhCCCC--CChHHHHHHHHHHh
Q 037620 16 LIDTLCKSRHVERAQEVFDKMKKRRFDPD--IKSYTILLEGWGQQKNLLSMNEVYREMKDDGFE--PDVVSYGIMINAHC 91 (330)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~ 91 (330)
+..++-..|+.++|+.+|+.....|.... ...+-.+.+.+...|++++|..++++....... -+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455566777777777777766654433 234445556666777777777777766654211 01122222334556
Q ss_pred ccCcHHHHHHHHHHHH
Q 037620 92 SAKRYDEAVELFREME 107 (330)
Q Consensus 92 ~~~~~~~a~~~~~~~~ 107 (330)
..|+.++|++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6677777776665544
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.81 E-value=0.0028 Score=42.60 Aligned_cols=89 Identities=18% Similarity=0.112 Sum_probs=46.4
Q ss_pred HHHhhccChHHHHHHHHHHHhCCCCCC--hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCC---ChHHHHHHHHHHhc
Q 037620 53 EGWGQQKNLLSMNEVYREMKDDGFEPD--VVSYGIMINAHCSAKRYDEAVELFREMEATNCKP---SPHIFCTLINGLGS 127 (330)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 127 (330)
.++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|+.++++..... |. +......+..++..
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHH
Confidence 344555666666666666666554432 2234445556666666666666666655432 11 22222223334555
Q ss_pred cCcHHHHHHHHHHHH
Q 037620 128 EKRLSEALQFFGQSK 142 (330)
Q Consensus 128 ~~~~~~a~~~~~~~~ 142 (330)
.|+.++|.+.+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 566666666554443
No 189
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.0024 Score=49.36 Aligned_cols=113 Identities=15% Similarity=0.192 Sum_probs=85.2
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhC---CCHHHHHHHHHHHHhCCCCccHHH
Q 037620 182 GPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYN---AQVDMAMRIWDEMKARGVLPVMHM 258 (330)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~ 258 (330)
+-|...|..|...|...|+.+.|...|....+-.+.. ...+..+..++..+ ....++..+|+++...+.. |..+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n--~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN--PEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHH
Confidence 3478899999999999999999999999988744444 44455555544333 3466899999999988765 7788
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 037620 259 YSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQ 299 (330)
Q Consensus 259 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 299 (330)
...|...+...|++.+|...|+.|++.. |....+..++.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 8888889999999999999999999754 33344444443
No 190
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.81 E-value=0.00017 Score=42.75 Aligned_cols=55 Identities=16% Similarity=0.266 Sum_probs=26.3
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 229 RMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 229 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
..+...|++++|...|+++.+..+. +...+..+..++...|++++|...|+++++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455555555555555544322 444444455555555555555555555443
No 191
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.77 E-value=0.00012 Score=43.97 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=25.4
Q ss_pred ccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhC
Q 037620 22 KSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDD 74 (330)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (330)
+.|++++|+++|+.+.+.. |-+...+..+..+|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455555555555554421 224444445555555555555555555555544
No 192
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.0046 Score=47.82 Aligned_cols=102 Identities=13% Similarity=0.051 Sum_probs=69.2
Q ss_pred CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhcc---CcHHHHHHHHHHHHhcCCCCChhhH
Q 037620 77 EPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSE---KRLSEALQFFGQSKKRGFEPEAPTY 153 (330)
Q Consensus 77 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (330)
+-|...|-.|...|...|+...|..-|.+..+.. ++++..+..+..++... ....++..+++++...+ +.++.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4467777777777777777777777777777664 56666666666554332 23456777777777664 3456666
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHHcC
Q 037620 154 NAVVGAYCWSMRINDAYRMMDEMRKCG 180 (330)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (330)
..|...+...|++.+|...++.|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 666777777777777777777777753
No 193
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.71 E-value=0.011 Score=44.35 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=43.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC----hhhHHHHHHH
Q 037620 225 EIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPP----GQLFSNLKQA 300 (330)
Q Consensus 225 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~ 300 (330)
..++.-|-.+....+|...+..+.+. =...--.+.+.|.+.|.+..|..-++.+++.= |+ ......++.+
T Consensus 114 ~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y--p~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 114 EELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAIIRFQYVIENY--PDTPAAEEALARLAEA 187 (203)
T ss_dssp HHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHH
T ss_pred HHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHH
Confidence 34444444555555555555544432 01112224566778888888888888877642 22 2345567777
Q ss_pred HHhcCchHHHH
Q 037620 301 LRDEGMEETAV 311 (330)
Q Consensus 301 ~~~~g~~~~a~ 311 (330)
+.+.|..+.+.
T Consensus 188 y~~l~~~~~a~ 198 (203)
T PF13525_consen 188 YYKLGLKQAAD 198 (203)
T ss_dssp HHHTT-HHHHH
T ss_pred HHHhCChHHHH
Confidence 77777776443
No 194
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.70 E-value=0.011 Score=44.30 Aligned_cols=50 Identities=8% Similarity=0.044 Sum_probs=31.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCC--CccHHHHHHHHHHHhccCChhHH
Q 037620 226 IVVRMFCYNAQVDMAMRIWDEMKARGV--LPVMHMYSTLINSLCHEDKLDDA 275 (330)
Q Consensus 226 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a 275 (330)
.+...|.+.|.+..|..-++.+++.-+ .........++.+|.+.|..+.+
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 356677888888888888888776522 11224456667777777776643
No 195
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.013 Score=44.55 Aligned_cols=185 Identities=15% Similarity=0.090 Sum_probs=127.7
Q ss_pred ccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHH
Q 037620 22 KSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVE 101 (330)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 101 (330)
..|...+.+.-+..+... ....+...-.....+..+++|++=. ....+.++.++...+.+.-...
T Consensus 134 ~lgnpqesLdRl~~L~~~--------V~~ii~~~e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d 198 (366)
T KOG2796|consen 134 YLGNPQESLDRLHKLKTV--------VSKILANLEQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVD 198 (366)
T ss_pred hcCCcHHHHHHHHHHHHH--------HHHHHHHHHhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHH
Confidence 356666665555544431 1223333333334466666666533 3455678888888899999999
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHH-----HHHHhhCChhHHHHHHHHH
Q 037620 102 LFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVV-----GAYCWSMRINDAYRMMDEM 176 (330)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~a~~~~~~~ 176 (330)
.+.++++.+.+.++.....|++.-.+.|+.+.|...|+...+..-..+..+++.++ ..|.-.+++..|...+.++
T Consensus 199 ~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i 278 (366)
T KOG2796|consen 199 AYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEI 278 (366)
T ss_pred HHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhc
Confidence 99999998777889999999999999999999999999876654344444444443 3455677888888888888
Q ss_pred HHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHH
Q 037620 177 RKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYE 225 (330)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 225 (330)
...+. .++...|.-.-+..-.|+..+|.+.++.+.+ ..|...+-+
T Consensus 279 ~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~---~~P~~~l~e 323 (366)
T KOG2796|consen 279 LRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQ---QDPRHYLHE 323 (366)
T ss_pred cccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhc---cCCccchhh
Confidence 77643 2555555555555667899999999999976 344444434
No 196
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.68 E-value=0.0039 Score=44.03 Aligned_cols=69 Identities=25% Similarity=0.385 Sum_probs=41.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHH-----hcCCCCChhh
Q 037620 83 YGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSK-----KRGFEPEAPT 152 (330)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~ 152 (330)
...++..+...|++++|..+.+.+.... |.+...|..+|.+|...|+...|.+.|.++. +.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445566666777777777777777665 6667777777777777777777777776653 2466665544
No 197
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.65 E-value=0.021 Score=49.46 Aligned_cols=90 Identities=14% Similarity=0.202 Sum_probs=50.6
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHH-
Q 037620 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMY- 259 (330)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~- 259 (330)
++.+....-.+.+++.+.|.-++|.+.+-+... |. ..+..|...++|.+|.++-++..- |...+.
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~-----pk-----aAv~tCv~LnQW~~avelaq~~~l----~qv~tli 913 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL-----PK-----AAVHTCVELNQWGEAVELAQRFQL----PQVQTLI 913 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhccC-----cH-----HHHHHHHHHHHHHHHHHHHHhccc----hhHHHHH
Confidence 344555666677777777777777766654322 21 345566666777777766554321 111111
Q ss_pred -------------HHHHHHHhccCChhHHHHHHHHHHh
Q 037620 260 -------------STLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 260 -------------~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
..-|..+.+.|+.-+|.+++.+|.+
T Consensus 914 ak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 914 AKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 1223445566777777777777754
No 198
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.64 E-value=0.0024 Score=49.64 Aligned_cols=99 Identities=9% Similarity=0.074 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC--ccHHHHHHHH
Q 037620 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEP-TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL--PVMHMYSTLI 263 (330)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 263 (330)
.|...+....+.|++++|...|+.+.+.....+ ....+..+..+|...|++++|...|+.+.+.... .....+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444333445666666666666554211110 1234445556666666666666666666543211 1223333444
Q ss_pred HHHhccCChhHHHHHHHHHHhc
Q 037620 264 NSLCHEDKLDDACKYFQEMLDI 285 (330)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~~~~~ 285 (330)
..+...|+.++|..+|+++++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 4555566666666666666543
No 199
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.039 Score=48.19 Aligned_cols=115 Identities=15% Similarity=0.115 Sum_probs=88.1
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHH
Q 037620 182 GPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYST 261 (330)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 261 (330)
.....+.+--+.-+...|+..+|.++-.+..- ||...|-.-+.+++..+++++-+++-+..+ ++.-|..
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~P 749 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLP 749 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchh
Confidence 34445666667777889999999998887654 788888888999999999998877765543 2345777
Q ss_pred HHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHH
Q 037620 262 LINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQK 316 (330)
Q Consensus 262 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 316 (330)
++.+|.+.|+.++|.+++.+.- |. . ....+|.+.|++.+|.++.-+
T Consensus 750 FVe~c~~~~n~~EA~KYiprv~--~l---~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 750 FVEACLKQGNKDEAKKYIPRVG--GL---Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHHhcccHHHHhhhhhccC--Ch---H----HHHHHHHHhccHHHHHHHHHH
Confidence 8999999999999999987663 11 1 467788889998888776543
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.60 E-value=0.0024 Score=49.69 Aligned_cols=96 Identities=17% Similarity=0.043 Sum_probs=49.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCCCCC---hHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--CCCChhhHHHHH
Q 037620 83 YGIMINAHCSAKRYDEAVELFREMEATNCKPS---PHIFCTLINGLGSEKRLSEALQFFGQSKKRG--FEPEAPTYNAVV 157 (330)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~ 157 (330)
|...+....+.|++++|...|+.+.+.. |-+ +.++..+..+|...|++++|...|..+.+.- .+.....+..+.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3333333344566666666666665543 111 2355555666666666666666666665431 011223333344
Q ss_pred HHHHhhCChhHHHHHHHHHHHc
Q 037620 158 GAYCWSMRINDAYRMMDEMRKC 179 (330)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~ 179 (330)
.++...|+.++|..+|+.+.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666666666666666554
No 201
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.58 E-value=0.0082 Score=42.35 Aligned_cols=72 Identities=15% Similarity=0.265 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHH-----hcCCCCChhhHH
Q 037620 223 TYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEML-----DIGIRPPGQLFS 295 (330)
Q Consensus 223 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~ 295 (330)
+...++..+...|+++.|..+.+.+....+. +...|..+|.+|...|+...|.+.|+++. +.|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 3455666777888888888888888877654 77788888888888888888888888764 357778776543
No 202
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.57 E-value=0.014 Score=41.85 Aligned_cols=134 Identities=13% Similarity=0.067 Sum_probs=104.3
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-ccHHHH
Q 037620 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL-PVMHMY 259 (330)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ 259 (330)
+.|+...-..|..+....|+..+|...|++... ...-.|......+.++....+++..|...++++.+.+.. -++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 457777778899999999999999999999887 556667788888999999999999999999998876421 122345
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHH
Q 037620 260 STLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKI 317 (330)
Q Consensus 260 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 317 (330)
-.+.+.+...|++.+|...|+...+. -|+...-......+.+.|+.+++..-+..+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 56778999999999999999999865 456555555566677888776665444433
No 203
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.50 E-value=0.00065 Score=41.36 Aligned_cols=57 Identities=7% Similarity=0.161 Sum_probs=42.3
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 037620 229 RMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 229 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 286 (330)
..|.+.++++.|.++++.+...++. ++..+.....++.+.|++++|...+++..+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 4567778888888888887777554 66667777777788888888888888777653
No 204
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.48 E-value=0.0023 Score=51.58 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=36.7
Q ss_pred HHHccCChHHHHHHHHHHhhCCCCCCh----HHHHHHHHHHhhccChHHHHHHH
Q 037620 19 TLCKSRHVERAQEVFDKMKKRRFDPDI----KSYTILLEGWGQQKNLLSMNEVY 68 (330)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~ 68 (330)
-+++.|+......+|+..++.|.. |. ..|..|..+|.-.+++++|+++.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhh
Confidence 478889999999999998887632 33 34666777777888888888764
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.47 E-value=0.0011 Score=40.34 Aligned_cols=50 Identities=20% Similarity=0.276 Sum_probs=19.3
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 037620 92 SAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSK 142 (330)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (330)
+.++++.|.++++.+...+ |.+...+.....++.+.|++++|.+.++...
T Consensus 7 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 7 QQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred hCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3333444444444333332 3333333333333334444444444433333
No 206
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.46 E-value=0.0043 Score=42.16 Aligned_cols=50 Identities=18% Similarity=0.264 Sum_probs=28.5
Q ss_pred CCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-CCCccHHHHHHHHH
Q 037620 215 PGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR-GVLPVMHMYSTLIN 264 (330)
Q Consensus 215 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~ 264 (330)
....|+..+..+++.+|+.+|++..|.++.+.+.+. ++..+..+|..|++
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344556666666666666666666666666655432 44444555555555
No 207
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.44 E-value=0.002 Score=43.73 Aligned_cols=99 Identities=13% Similarity=0.133 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 037620 115 PHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHH 194 (330)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (330)
..++..++.++++.|+.+....+++..-..++...... +. .-......|+..+..+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~-----------~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKE-----------GD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCcccc-----------Cc---------cCCCCCCCCCHHHHHHHHHH
Confidence 45566666666667766666666654432211110000 00 11123456888888888888
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh
Q 037620 195 LIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCY 233 (330)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (330)
|+..|++..|.++++.+.+..+++.+..+|..|++-...
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 888888888888888888877877778888888875443
No 208
>PRK15331 chaperone protein SicA; Provisional
Probab=97.44 E-value=0.02 Score=40.42 Aligned_cols=90 Identities=12% Similarity=0.026 Sum_probs=61.5
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCh
Q 037620 87 INAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRI 166 (330)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (330)
..-+...|++++|..+|+-+.-.+ +.+..-+..|..++-..+++++|...|......+. .|+..+-....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence 344556777788877777776655 55566667777777777777887777776655542 3444455566777777788
Q ss_pred hHHHHHHHHHHH
Q 037620 167 NDAYRMMDEMRK 178 (330)
Q Consensus 167 ~~a~~~~~~~~~ 178 (330)
+.|...|+....
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888777777766
No 209
>PRK15331 chaperone protein SicA; Provisional
Probab=97.42 E-value=0.0091 Score=42.09 Aligned_cols=92 Identities=13% Similarity=-0.023 Sum_probs=75.9
Q ss_pred HHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCc
Q 037620 51 LLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKR 130 (330)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 130 (330)
...-+...|++++|..+|.-+...+.- +..-|..|..++-..+++++|+..|......+ +-|+..+.....++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence 344556889999999999999887533 67777888888999999999999998876655 4566667778899999999
Q ss_pred HHHHHHHHHHHHhc
Q 037620 131 LSEALQFFGQSKKR 144 (330)
Q Consensus 131 ~~~a~~~~~~~~~~ 144 (330)
.+.|...|......
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998874
No 210
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.37 E-value=0.047 Score=43.27 Aligned_cols=123 Identities=19% Similarity=0.226 Sum_probs=62.1
Q ss_pred HHccCChHHHHHHHHHHhhCC--CCCChH------HHHHHHHHHhhcc-ChHHHHHHHHHHHhC--------CCCCC---
Q 037620 20 LCKSRHVERAQEVFDKMKKRR--FDPDIK------SYTILLEGWGQQK-NLLSMNEVYREMKDD--------GFEPD--- 79 (330)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~------~~~~l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~--- 79 (330)
..+.|+++.|..++.+..... ..|+.. .|+.-...+ ..+ +++.|..++++..+. ...|+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 356788888888888776632 122221 122222323 334 666666665554332 11122
Q ss_pred --hHHHHHHHHHHhccCcHH---HHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 80 --VVSYGIMINAHCSAKRYD---EAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 80 --~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
..++..++.++...+..+ +|.++++.+.... +-.+.++..-+..+.+.++.+.+.+.+.+|...
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 233445555666555433 3444444443322 333445545555555566666666666666655
No 211
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.36 E-value=0.057 Score=44.03 Aligned_cols=169 Identities=9% Similarity=0.076 Sum_probs=97.2
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcC---CCCChhhHHHHHHHHHh---hCChhHHHHHHHHHHHcCCCCcHHH
Q 037620 114 SPHIFCTLINGLGSEKRLSEALQFFGQSKKRG---FEPEAPTYNAVVGAYCW---SMRINDAYRMMDEMRKCGIGPNTRT 187 (330)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~ 187 (330)
+..+...++-+|....+++...++.+.+.... +..+...-....-++.+ .|+.++|++++..+......+++.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 34444556667888888888888888887652 11122222334445555 7888888888888665556677888
Q ss_pred HHHHHHHHHHc---------CCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCH----HHHHHHHHH----HHhC
Q 037620 188 YDIVLHHLIKA---------GRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQV----DMAMRIWDE----MKAR 250 (330)
Q Consensus 188 ~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~----~~~~ 250 (330)
|..+...|-.. ...++|...|.+.-+ ..|+...--.++..+.-.|.. .+..++--. +.+.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~k 296 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRK 296 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhh
Confidence 88888776421 235667777776654 334443322233333333321 123333311 1122
Q ss_pred CC---CccHHHHHHHHHHHhccCChhHHHHHHHHHHhc
Q 037620 251 GV---LPVMHMYSTLINSLCHEDKLDDACKYFQEMLDI 285 (330)
Q Consensus 251 ~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 285 (330)
|. ..+--.+..++.++.-.|+.++|.+..++|...
T Consensus 297 g~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 297 GSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 22 123334456677777778888888888877754
No 212
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.059 Score=43.82 Aligned_cols=263 Identities=10% Similarity=0.003 Sum_probs=135.9
Q ss_pred HHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcH
Q 037620 17 IDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRY 96 (330)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (330)
-..+.+..++..|+..+....+.. +-++.-|..-...+...++++++.--.+.-.+.... ........-.++...++.
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDL 133 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHH
Confidence 344556667778888888777753 334455555555555566666665554444332100 111122222222222222
Q ss_pred HHHHHHHH---------------HHHhcCC-CCChHHHHHH-HHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 037620 97 DEAVELFR---------------EMEATNC-KPSPHIFCTL-INGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGA 159 (330)
Q Consensus 97 ~~a~~~~~---------------~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (330)
.+|.+.++ .+..... +|.-..+..+ ..++.-.|+.++|.+.--...+.. ..+......-..+
T Consensus 134 i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~ 212 (486)
T KOG0550|consen 134 IEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLC 212 (486)
T ss_pred HHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccc
Confidence 22222222 2211111 1222333322 245566778888877776666653 1122222222223
Q ss_pred HHhhCChhHHHHHHHHHHHcCCCCcHHHHHH---H----------HHHHHHcCCHHHHHHHHHHhhcC--CCCCCchHHH
Q 037620 160 YCWSMRINDAYRMMDEMRKCGIGPNTRTYDI---V----------LHHLIKAGRTEEAYSVFKRMSRK--PGTEPTVSTY 224 (330)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l----------~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~ 224 (330)
+.-.++.+.+...|++....+ |+...-.. . ..-..+.|.+..|.+.|.+.... .+..|+...|
T Consensus 213 ~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY 290 (486)
T KOG0550|consen 213 LYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLY 290 (486)
T ss_pred cccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHH
Confidence 334566777777777666533 33322111 1 12235678888888888877641 2334455566
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhc
Q 037620 225 EIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDI 285 (330)
Q Consensus 225 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 285 (330)
........+.|+..+|+.--++..+.+.. -...|..-..++...++|++|++-+++..+.
T Consensus 291 ~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 291 GNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66666777788888888777776654221 1223333344556677788888877777654
No 213
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.33 E-value=0.04 Score=47.87 Aligned_cols=239 Identities=13% Similarity=0.122 Sum_probs=152.1
Q ss_pred CCChHHHHHHHHHHhhccChHHHHHHHHHHHhC-CCCCChH--------HHHHHHHHHhccCcHHHHHHHHHHHHhcCCC
Q 037620 42 DPDIKSYTILLEGWGQQKNLLSMNEVYREMKDD-GFEPDVV--------SYGIMINAHCSAKRYDEAVELFREMEATNCK 112 (330)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~--------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 112 (330)
.|.+..|..+.......-.++-|+..|-+...- |++.-.. .-.+=+.+| -|++++|.++|-++..++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 478889999988888877888888887766543 3321111 111112222 478899999887776554
Q ss_pred CChHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHH
Q 037620 113 PSPHIFCTLINGLGSEKRLSEALQFFGQSKKR-GFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIV 191 (330)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (330)
..+..+.+.|++-.+.++++.=-.. .-.--...|+.+...+.....|++|.+.+..-.. ....
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~ 828 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQ 828 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhH
Confidence 3456777888887777666431110 0011235688888888888888888888865322 1345
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCC
Q 037620 192 LHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDK 271 (330)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 271 (330)
+.++.+..++++-+.+...+.+ +....-.+.+++.+.|.-++|.+.+-+... | ...+..|...++
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe------~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPE------DSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCc------ccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHH
Confidence 6777777888887777776655 444556788889999999998887754321 1 224567777888
Q ss_pred hhHHHHHHHHHHhcCCCCChhhH--------------HHHHHHHHhcCchHHHHHHHHHHHh
Q 037620 272 LDDACKYFQEMLDIGIRPPGQLF--------------SNLKQALRDEGMEETAVVLAQKIDK 319 (330)
Q Consensus 272 ~~~a~~~~~~~~~~~~~~~~~~~--------------~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (330)
|.+|.++.++.. -|...++ ...+..+.++|+.=.|.+++.+|.+
T Consensus 894 W~~avelaq~~~----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 894 WGEAVELAQRFQ----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHhcc----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 888888776543 1222221 1234456677777777777766643
No 214
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.27 E-value=0.069 Score=43.15 Aligned_cols=296 Identities=12% Similarity=0.105 Sum_probs=180.7
Q ss_pred HHHHHHHHH--ccCChHHHHHHHHHHhhCCCCCChHHHHHHHHH--HhhccChHHHHHHHHHHHhCCCCCChHHH--HHH
Q 037620 13 FNRLIDTLC--KSRHVERAQEVFDKMKKRRFDPDIKSYTILLEG--WGQQKNLLSMNEVYREMKDDGFEPDVVSY--GIM 86 (330)
Q Consensus 13 ~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l 86 (330)
|..|-..+. ..|+-..|.++-.+..+ -+..|....-.++.+ ..-.|+++.|.+-|+.|... |..... ..|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~-llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASK-LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 555555554 45677777777665543 133455555555543 34568999999999999853 333322 223
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-CCCChhh--HHHHHHHHHh-
Q 037620 87 INAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRG-FEPEAPT--YNAVVGAYCW- 162 (330)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~~~- 162 (330)
.-...+.|..+.|.++-+..-..- +.-...+...+...+..|+++.|+++++.-.... +.++..- -..|+.+-..
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 334456788888888888776654 4456677888888999999999999988765432 2333321 1222222211
Q ss_pred --hCChhHHHHHHHHHHHcCCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHH
Q 037620 163 --SMRINDAYRMMDEMRKCGIGPNTR-TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDM 239 (330)
Q Consensus 163 --~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (330)
..+...|...-.+..+ +.|+.. .-..-..++.+.|+..++-.+++.+-+ ..|.+.++ .+..+.+.|+.
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia--~lY~~ar~gdt-- 310 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIA--LLYVRARSGDT-- 310 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHH--HHHHHhcCCCc--
Confidence 2345556655555444 344432 223345677888999999999988876 34444432 23334455543
Q ss_pred HHHHHHHHHhC-CCCc-cHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH-hcCchHHHHHHHHH
Q 037620 240 AMRIWDEMKAR-GVLP-VMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALR-DEGMEETAVVLAQK 316 (330)
Q Consensus 240 a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~ 316 (330)
+..=+++.... .++| +..+...+.++....|++..|..--+.... ..|....|..+.+.-. ..||-.++..++-+
T Consensus 311 a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 311 ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 33333333221 1222 456666777777888888888877666653 3678888887777654 44888888888887
Q ss_pred HHhcCCCC
Q 037620 317 IDKLRKTP 324 (330)
Q Consensus 317 ~~~~~~~~ 324 (330)
..+.-..|
T Consensus 389 av~APrdP 396 (531)
T COG3898 389 AVKAPRDP 396 (531)
T ss_pred HhcCCCCC
Confidence 77665555
No 215
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.22 E-value=0.085 Score=43.08 Aligned_cols=75 Identities=11% Similarity=0.040 Sum_probs=37.4
Q ss_pred HHHHHhhccChHHHHHHHHHHHhCC---CCCChHHHHHHHHHHhc---cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 037620 51 LLEGWGQQKNLLSMNEVYREMKDDG---FEPDVVSYGIMINAHCS---AKRYDEAVELFREMEATNCKPSPHIFCTLING 124 (330)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (330)
++-.|....+++..+++++.+...- +.-....-....-++.+ .|+.++|++++..+....-.+++.+|..+.+.
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3334566666666666666665431 11112222233334444 56666666666664433335566666655554
Q ss_pred H
Q 037620 125 L 125 (330)
Q Consensus 125 ~ 125 (330)
|
T Consensus 227 y 227 (374)
T PF13281_consen 227 Y 227 (374)
T ss_pred H
Confidence 4
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.16 E-value=0.0021 Score=39.64 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=10.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHH
Q 037620 224 YEIVVRMFCYNAQVDMAMRIWDEM 247 (330)
Q Consensus 224 ~~~l~~~~~~~~~~~~a~~~~~~~ 247 (330)
++.+...|...|++++|+..|++.
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~a 31 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKA 31 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444444444444443
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.09 E-value=0.002 Score=39.78 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=8.4
Q ss_pred HHHHHHhccCcHHHHHHHHHH
Q 037620 85 IMINAHCSAKRYDEAVELFRE 105 (330)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~ 105 (330)
.+..++...|++++|++.+++
T Consensus 51 ~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 51 NLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 333334444444444444333
No 218
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.03 E-value=0.19 Score=43.63 Aligned_cols=253 Identities=10% Similarity=0.119 Sum_probs=130.0
Q ss_pred CCCChhhHHHHHHHHHccCChHHHHHHHH---------HHhhCCCCCChHHHHHHHHHHhhccCh--HHHHHHHHHHHhC
Q 037620 6 LKQELPDFNRLIDTLCKSRHVERAQEVFD---------KMKKRRFDPDIKSYTILLEGWGQQKNL--LSMNEVYREMKDD 74 (330)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~ 74 (330)
+.|....+.+-+..|...|.+++|.++-- .+... ..+...++..=.+|.+..+. -+.+.-+++++++
T Consensus 552 i~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~r 629 (1081)
T KOG1538|consen 552 ISAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKR 629 (1081)
T ss_pred eecccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 44555556666677888888888865421 11110 01222334444555555443 3444456677777
Q ss_pred CCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHH---------h-c
Q 037620 75 GFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSK---------K-R 144 (330)
Q Consensus 75 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---------~-~ 144 (330)
|-.|+... +...++-+|.+.+|-++|.+--.. +..+..|.....++.|.+++..-. + .
T Consensus 630 ge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~e---------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA 697 (1081)
T KOG1538|consen 630 GETPNDLL---LADVFAYQGKFHEAAKLFKRSGHE---------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRA 697 (1081)
T ss_pred CCCchHHH---HHHHHHhhhhHHHHHHHHHHcCch---------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 77777754 345566778888888888653211 223444444444555544442110 0 0
Q ss_pred CCCCChhhHHHHHHHHHhhCChhHHHHHHH------HHHHcCCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC
Q 037620 145 GFEPEAPTYNAVVGAYCWSMRINDAYRMMD------EMRKCGIG---PNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKP 215 (330)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (330)
....+..--.+...++...|+.++|..+.- -+.+.+-+ .+..+...+...+.+...+.-|-++|.++-.
T Consensus 698 ~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-- 775 (1081)
T KOG1538|consen 698 DWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD-- 775 (1081)
T ss_pred HHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--
Confidence 001111111233444555666666655421 11111111 1233444444455556667777777776633
Q ss_pred CCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccH-----------HHHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 216 GTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVM-----------HMYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 216 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
...+++.....++|++|..+-+..-+. .|+. .-|...-++|.+.|+-.+|..+++++..
T Consensus 776 --------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 776 --------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred --------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 135667777788888888777665432 2221 1123333455666666666666666654
No 219
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.03 E-value=0.09 Score=45.06 Aligned_cols=166 Identities=18% Similarity=0.193 Sum_probs=109.6
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHcC-CCCcH-----HHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCCCCchH
Q 037620 153 YNAVVGAYCWSMRINDAYRMMDEMRKCG-IGPNT-----RTYDIVLHHLIK----AGRTEEAYSVFKRMSRKPGTEPTVS 222 (330)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 222 (330)
+..++....-.||-+.+++.+....+.+ +.-.. -.|...+..++. ....+.|.+++..+.+ .-|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~---~yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK---RYPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH---hCCCcH
Confidence 4455566667789999999888776532 22111 123333333332 4567889999999976 334544
Q ss_pred HHH-HHHHHHHhCCCHHHHHHHHHHHHhCC---CCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 037620 223 TYE-IVVRMFCYNAQVDMAMRIWDEMKARG---VLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLK 298 (330)
Q Consensus 223 ~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 298 (330)
.|. .-.+.+...|+.++|.+.|++..... .......+-.+..++...++|++|...|.++.+.. ..+..+|..+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 443 34566778899999999999765321 11223445566777888999999999999999754 44566666554
Q ss_pred HH-HHhcCch-------HHHHHHHHHHHhcCC
Q 037620 299 QA-LRDEGME-------ETAVVLAQKIDKLRK 322 (330)
Q Consensus 299 ~~-~~~~g~~-------~~a~~~~~~~~~~~~ 322 (330)
-+ +...|+. ++|.++++++.....
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 43 4467777 889999988875443
No 220
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.97 E-value=0.028 Score=46.57 Aligned_cols=98 Identities=15% Similarity=0.091 Sum_probs=67.6
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCch----HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHH
Q 037620 183 PNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTV----STYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHM 258 (330)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 258 (330)
.+...++.+..+|...|++++|+..|++..+ ..|+. .+|..+..+|...|+.++|...+++..+.+ .+ .
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~ 145 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K 145 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence 4567888899999999999999999999876 34443 358889999999999999999999988752 11 1
Q ss_pred HHHHHH--HHhccCChhHHHHHHHHHHhcCC
Q 037620 259 YSTLIN--SLCHEDKLDDACKYFQEMLDIGI 287 (330)
Q Consensus 259 ~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~ 287 (330)
|..+.. .+....+.++..++++.+...|.
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 321111 11122233456666666666553
No 221
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.14 Score=39.93 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=22.7
Q ss_pred hccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHH
Q 037620 91 CSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQS 141 (330)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 141 (330)
...|++.+|..+|....... +-+...-..++.+|...|+.+.|..++..+
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 34444444444444444433 233334444444444455555454444444
No 222
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.89 E-value=0.029 Score=46.47 Aligned_cols=65 Identities=9% Similarity=-0.024 Sum_probs=39.4
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCCh---HHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 79 DVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSP---HIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
+...++.+..+|...|++++|+..|++.++.+ |-+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44556666666666666666666666666554 2222 23666666666666666666666666554
No 223
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=96.88 E-value=0.089 Score=37.58 Aligned_cols=145 Identities=14% Similarity=0.230 Sum_probs=85.0
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 037620 170 YRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKA 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 249 (330)
.+.++.+.+.+++|+...+..++..+.+.|++.....++. .++-+|.......+-. ..+.+..+.++--+|..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq-----~~Vi~DSk~lA~~LLs--~~~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ-----YHVIPDSKPLACQLLS--LGNQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh-----hcccCCcHHHHHHHHH--hHccChHHHHHHHHHHH
Confidence 4455666677788888888888888888888776666555 3444555443333322 22233444444444443
Q ss_pred CCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHh----cCCCCC
Q 037620 250 RGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK----LRKTPL 325 (330)
Q Consensus 250 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~ 325 (330)
. . ...+..+++.+...|++-+|+++.+...... ......++.+..+.+|...-..+++-+.. ...+|.
T Consensus 87 R-L---~~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n~~~~~~~~ 158 (167)
T PF07035_consen 87 R-L---GTAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFEERNLRLRGSPS 158 (167)
T ss_pred H-h---hhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHHHhhHhhcCCCC
Confidence 2 0 0136667777888888888888887753221 12224466666677776665555555544 335566
Q ss_pred CcCC
Q 037620 326 VDRG 329 (330)
Q Consensus 326 ~~~~ 329 (330)
+.+|
T Consensus 159 f~~~ 162 (167)
T PF07035_consen 159 FTKG 162 (167)
T ss_pred CCcc
Confidence 6554
No 224
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.86 E-value=0.18 Score=40.87 Aligned_cols=273 Identities=13% Similarity=0.116 Sum_probs=131.6
Q ss_pred ChHHHHHHHHHHhhCCCCCChHHHHHHHHHHh--hccChHHHHHHHHHHHhCCCCCChHHHHHHHH--HHhccCcHHHHH
Q 037620 25 HVERAQEVFDKMKKRRFDPDIKSYTILLEGWG--QQKNLLSMNEVYREMKDDGFEPDVVSYGIMIN--AHCSAKRYDEAV 100 (330)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~ 100 (330)
....+.+.|..-+.. ..|..|-.++. -.|+-..|.++-.+..+. +..|......++. +-.-.|+++.|.
T Consensus 68 sP~t~~Ryfr~rKRd------rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar 140 (531)
T COG3898 68 SPYTARRYFRERKRD------RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDAR 140 (531)
T ss_pred CcHHHHHHHHHHHhh------hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHH
Confidence 344455555544331 23444444433 345666666655544322 2234333333443 233457777777
Q ss_pred HHHHHHHhcCCCCChH--HHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHH
Q 037620 101 ELFREMEATNCKPSPH--IFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRK 178 (330)
Q Consensus 101 ~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (330)
+-|+.|... |... -...|.-..-+.|..+.|.++-+.....- +.-...+...+...+..|+++.|+++++.-..
T Consensus 141 ~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 141 KKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 777777642 1111 11222233345677777777766665542 22344566677777777777777777766544
Q ss_pred cC-CCCcHH--HHHHHHHHHH---HcCCHHHHHHHHHHhhcCCCCCCchHH-HHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 037620 179 CG-IGPNTR--TYDIVLHHLI---KAGRTEEAYSVFKRMSRKPGTEPTVST-YEIVVRMFCYNAQVDMAMRIWDEMKARG 251 (330)
Q Consensus 179 ~~-~~~~~~--~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 251 (330)
.. +.++.. .-..|+.+-. -..+...|...-.+..+ ..|+... -.....++.+.|+..++-.+++.+-+..
T Consensus 217 ~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K---L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e 293 (531)
T COG3898 217 AKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK---LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE 293 (531)
T ss_pred HHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh---cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC
Confidence 22 222321 1112221111 12234444444433322 3333221 1233456677777777777777776665
Q ss_pred CCccHHHHHHHHHHHhccCChhHHHHHHHHHHhc-CCCC-ChhhHHHHHHHHHhcCchHHHHHHHHHH
Q 037620 252 VLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDI-GIRP-PGQLFSNLKQALRDEGMEETAVVLAQKI 317 (330)
Q Consensus 252 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 317 (330)
+.|+. +..+ .+.+.|+ .+..-+++.... .++| +......+.++-...|++..|..-.+..
T Consensus 294 PHP~i--a~lY--~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa 355 (531)
T COG3898 294 PHPDI--ALLY--VRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAA 355 (531)
T ss_pred CChHH--HHHH--HHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 44432 2222 2233443 333333333221 1223 3445555666666677766655444433
No 225
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.32 Score=42.89 Aligned_cols=301 Identities=10% Similarity=0.069 Sum_probs=166.6
Q ss_pred CCCCCCCChhhHHH-----HHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccC---hHHHHHHHHHHHh
Q 037620 2 DKFGLKQELPDFNR-----LIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN---LLSMNEVYREMKD 73 (330)
Q Consensus 2 ~~~g~~~~~~~~~~-----li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~ 73 (330)
.+.|++.+..-|.. +|.-+...+.+..|+++-..+...-.. ....|.....-+.+..+ -+.+..+-+++..
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 45678887777655 466677788899999988777542211 25666666666666532 2223333333332
Q ss_pred CCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcC----CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcC----
Q 037620 74 DGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATN----CKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRG---- 145 (330)
Q Consensus 74 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---- 145 (330)
. . -....|..+..-....|+.+.|..+++.=...+ +-.+-.-+...+.-+...|+.+....++-.+...-
T Consensus 503 ~-~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~ 580 (829)
T KOG2280|consen 503 K-L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSS 580 (829)
T ss_pred c-C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 2 2 345667777777778899998888775422111 00122233445556667777777666665554321
Q ss_pred -------CCCChhhHHHHHHH--------HHhhCChhHHHHHHH--HHH----HcCCCCcHHHHHHHHHHHHHcCC----
Q 037620 146 -------FEPEAPTYNAVVGA--------YCWSMRINDAYRMMD--EMR----KCGIGPNTRTYDIVLHHLIKAGR---- 200 (330)
Q Consensus 146 -------~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~--~~~----~~~~~~~~~~~~~l~~~~~~~~~---- 200 (330)
.+.....|.-+++- +...++-.++...+. ... ..+..|+ ......++.+...
T Consensus 581 l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e 657 (829)
T KOG2280|consen 581 LFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFE 657 (829)
T ss_pred HHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhH
Confidence 11111222222210 011111111111111 100 0111222 2223333333322
Q ss_pred ------HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhH
Q 037620 201 ------TEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDD 274 (330)
Q Consensus 201 ------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 274 (330)
..+-+.+.+.+..+.+..-...+.+--+.-+...|+..+|.++-.+++ .|+...|-.-+.+++..++|++
T Consensus 658 ~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kwee 733 (829)
T KOG2280|consen 658 AKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEE 733 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHH
Confidence 112233333343333433333445556666778888889988877664 4688888888999999999988
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 037620 275 ACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKID 318 (330)
Q Consensus 275 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (330)
-.++-+... ++.-|.-.+.+|.+.|+.++|.+++-+..
T Consensus 734 LekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 734 LEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 777665543 24556678899999999999998886654
No 226
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.81 E-value=0.0099 Score=48.09 Aligned_cols=269 Identities=16% Similarity=0.110 Sum_probs=174.6
Q ss_pred HHHhhccChHHHHHHHHHHHhCCCCCChHH----HHHHHHHHhccCcHHHHHHHHHHH--Hhc--C-CCCChHHHHHHHH
Q 037620 53 EGWGQQKNLLSMNEVYREMKDDGFEPDVVS----YGIMINAHCSAKRYDEAVELFREM--EAT--N-CKPSPHIFCTLIN 123 (330)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~ll~~~~~~~~~~~a~~~~~~~--~~~--~-~~~~~~~~~~l~~ 123 (330)
.-+++.|+......+|+..++.|.. |..+ |..|.++|.-.+++++|+++...= ... | -.-.......|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3478999999999999999988743 5443 555667777788888888875431 111 1 0112233445666
Q ss_pred HHhccCcHHHHHHHHHH----HHhcCC-CCChhhHHHHHHHHHhhCC--------------------hhHHHHHHHHH--
Q 037620 124 GLGSEKRLSEALQFFGQ----SKKRGF-EPEAPTYNAVVGAYCWSMR--------------------INDAYRMMDEM-- 176 (330)
Q Consensus 124 ~~~~~~~~~~a~~~~~~----~~~~~~-~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~-- 176 (330)
.+--.|.+++|.-+..+ ..+.|- ......+-.+...|...|+ ++.|.++|.+=
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 66677888888766543 233331 1233455567777765543 12233333321
Q ss_pred --HHcCCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHhh---cCCCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 037620 177 --RKCGIG-PNTRTYDIVLHHLIKAGRTEEAYSVFKRMS---RKPGTEP-TVSTYEIVVRMFCYNAQVDMAMRIWDEMKA 249 (330)
Q Consensus 177 --~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 249 (330)
.+.|-. .-...|..|...|.-.|+++.|+...+.-. +..|.+. ....+..+..++.-.|+++.|.+.|+....
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 111110 112345556666667788999987766432 2234332 345678888999999999999999987543
Q ss_pred ----CCC-CccHHHHHHHHHHHhccCChhHHHHHHHHHHhcC-----CCCChhhHHHHHHHHHhcCchHHHHHHHHHHHh
Q 037620 250 ----RGV-LPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIG-----IRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 319 (330)
Q Consensus 250 ----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (330)
.|- .....+..+|...|.-..++++|+.++.+-+... ..-....+..|..++-..|..++|..+.+.-.+
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 332 2234566778888888899999999999988742 334467899999999999999999999988875
Q ss_pred cCC
Q 037620 320 LRK 322 (330)
Q Consensus 320 ~~~ 322 (330)
...
T Consensus 344 ~s~ 346 (639)
T KOG1130|consen 344 SSL 346 (639)
T ss_pred HHH
Confidence 443
No 227
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.074 Score=43.16 Aligned_cols=61 Identities=11% Similarity=-0.094 Sum_probs=33.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHH
Q 037620 117 IFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRK 178 (330)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (330)
++..+..+|.+.+++..|++........+ ++|+...-.-..++...|+++.|...|+.+.+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 34455555555555555555555555553 34444444445555555566666655555555
No 228
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.76 E-value=0.047 Score=36.73 Aligned_cols=90 Identities=14% Similarity=0.080 Sum_probs=52.7
Q ss_pred HHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-CCCccHH---HHHHHHHHHhcc
Q 037620 194 HLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR-GVLPVMH---MYSTLINSLCHE 269 (330)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~---~~~~l~~~~~~~ 269 (330)
++...|+.+.|++.|.+... -.+.....||.-.+++.-.|+.++|++=+++..+. |.. +.. .|..-...|...
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 45566777777777776654 23334556677777777777777777766666654 222 221 222223345556
Q ss_pred CChhHHHHHHHHHHhcC
Q 037620 270 DKLDDACKYFQEMLDIG 286 (330)
Q Consensus 270 ~~~~~a~~~~~~~~~~~ 286 (330)
|+.+.|..=|+...+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 66677776666666555
No 229
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.73 E-value=0.084 Score=44.62 Aligned_cols=156 Identities=10% Similarity=0.112 Sum_probs=81.3
Q ss_pred HhccCcHHHHHHHHHH-HHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhH
Q 037620 90 HCSAKRYDEAVELFRE-MEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIND 168 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (330)
..-.++++.+.++... -.-..+| ....+.++..+.+.|-.+.|+++.. |+. .-.....+.|+++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDI 336 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHH
Confidence 3445666666555541 1111112 3345666666777777777766643 221 12233456677777
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 037620 169 AYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMK 248 (330)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 248 (330)
|.++.++. .+...|..|.......|+++-|...|.+... +..|+-.|...|+.+...++.+...
T Consensus 337 A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 337 ALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 66554322 2556777777777777777777777776543 3455556667777766666666655
Q ss_pred hCCCCccHHHHHHHHHHHhccCChhHHHHHHHH
Q 037620 249 ARGVLPVMHMYSTLINSLCHEDKLDDACKYFQE 281 (330)
Q Consensus 249 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 281 (330)
..|- ++....++...|+.++..+++.+
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 5432 44444555556776666666544
No 230
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.35 Score=43.27 Aligned_cols=142 Identities=13% Similarity=0.167 Sum_probs=65.8
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCh
Q 037620 87 INAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRI 166 (330)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (330)
...+.+.|++++|...|-+-+..- .| ..++.-|........-..+++.+.+.|+ .+...-..|+.+|.+.++.
T Consensus 375 gd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~ 447 (933)
T KOG2114|consen 375 GDYLYGKGDFDEATDQYIETIGFL-EP-----SEVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDV 447 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcch
Confidence 334445566666655554433221 11 1233444455555555555555555553 2444555566666666666
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Q 037620 167 NDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDE 246 (330)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 246 (330)
+...+..+... .|.. ..-....+..+.+.+-.++|..+-.+... +......+ +-..+++++|.+.+..
T Consensus 448 ~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~------he~vl~il---le~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 448 EKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK------HEWVLDIL---LEDLHNYEEALRYISS 515 (933)
T ss_pred HHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc------CHHHHHHH---HHHhcCHHHHHHHHhc
Confidence 55555444332 1111 11123344455555555555554444322 22222222 2344556666665554
Q ss_pred H
Q 037620 247 M 247 (330)
Q Consensus 247 ~ 247 (330)
+
T Consensus 516 l 516 (933)
T KOG2114|consen 516 L 516 (933)
T ss_pred C
Confidence 3
No 231
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.071 Score=43.27 Aligned_cols=97 Identities=10% Similarity=-0.018 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChh-hHHHHHHH
Q 037620 222 STYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQ-LFSNLKQA 300 (330)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~ 300 (330)
.+++.+.-++.+.+++..|+..-...+..+.. |......-.+++...|+++.|+..|+++++. .|+.. .-..++..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 35667778888888999999888888887654 7777777778888899999999999998865 44434 33444444
Q ss_pred HHhcCchH-HHHHHHHHHHhcC
Q 037620 301 LRDEGMEE-TAVVLAQKIDKLR 321 (330)
Q Consensus 301 ~~~~g~~~-~a~~~~~~~~~~~ 321 (330)
-.+..... +..++|..|...-
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 44444433 3467777776443
No 232
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.70 E-value=0.09 Score=40.43 Aligned_cols=87 Identities=15% Similarity=0.146 Sum_probs=36.2
Q ss_pred ccChHHHHHHHHHHHhCCC--CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHhccCcHHH
Q 037620 58 QKNLLSMNEVYREMKDDGF--EPDVVSYGIMINAHCSAKRYDEAVELFREMEATN--CKPSPHIFCTLINGLGSEKRLSE 133 (330)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 133 (330)
.|++..|...|...++... .-....+..|..++...|++++|..+|..+.+.- .+--+..+..|..+..+.|+.++
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 3445555555544444311 1112223334444445555555554444444321 01112334444444444444444
Q ss_pred HHHHHHHHHhc
Q 037620 134 ALQFFGQSKKR 144 (330)
Q Consensus 134 a~~~~~~~~~~ 144 (330)
|..+|+++.+.
T Consensus 234 A~atl~qv~k~ 244 (262)
T COG1729 234 ACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 233
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.66 E-value=0.13 Score=43.62 Aligned_cols=157 Identities=10% Similarity=0.074 Sum_probs=86.2
Q ss_pred HHHccCChHHHHHHHH--HHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcH
Q 037620 19 TLCKSRHVERAQEVFD--KMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRY 96 (330)
Q Consensus 19 ~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (330)
...-.++++++.++.. .+.. .+| ....+.++.-+.+.|..+.|+++..+ +. .-.....+.|+.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NIP--KDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCH
Confidence 3445677777666554 2221 122 34466677777777777777765432 21 123344566777
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHH
Q 037620 97 DEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEM 176 (330)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (330)
+.|.++.++ ..+...|..|.....+.|+++-|.+.+.+... +..|+-.|.-.|+.+...++.+..
T Consensus 335 ~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 335 DIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 777665433 23566777777777777777777777776542 345555666777777766666666
Q ss_pred HHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 037620 177 RKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRM 211 (330)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (330)
...| -++....++.-.|+.++..+++.+.
T Consensus 400 ~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 400 EERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5554 2344455555667777777766654
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.64 E-value=0.37 Score=41.40 Aligned_cols=159 Identities=16% Similarity=0.149 Sum_probs=104.1
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCCCCCh------hhHHHHHHHHHh----hCChhHHHHHHHHHHHcCCCCcHHHHHH-
Q 037620 122 INGLGSEKRLSEALQFFGQSKKRGFEPEA------PTYNAVVGAYCW----SMRINDAYRMMDEMRKCGIGPNTRTYDI- 190 (330)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 190 (330)
+....=.|+-+.+++.+.+..+.+---.+ -.|+..+..++. ..+.+.|.++++.+.+. -|+...|..
T Consensus 195 l~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~ 272 (468)
T PF10300_consen 195 LSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFF 272 (468)
T ss_pred HhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHH
Confidence 44445578889999988887654311111 123333333333 34677899999999886 356555443
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCCCC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHH-HHh
Q 037620 191 VLHHLIKAGRTEEAYSVFKRMSRKPGT--EPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLIN-SLC 267 (330)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 267 (330)
-.+.+...|++++|.+.|+........ ......+-.+.-.+.-.++|++|...|..+.+..-- +...|..+.. ++.
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~ 351 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAACLL 351 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHH
Confidence 345677899999999999976531111 123344556677788899999999999999886433 4455554443 445
Q ss_pred ccCCh-------hHHHHHHHHHH
Q 037620 268 HEDKL-------DDACKYFQEML 283 (330)
Q Consensus 268 ~~~~~-------~~a~~~~~~~~ 283 (330)
..++. ++|..+|.+..
T Consensus 352 ~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 352 MLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred hhccchhhhhhHHHHHHHHHHHH
Confidence 67777 88888888765
No 235
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.61 E-value=0.083 Score=45.64 Aligned_cols=249 Identities=13% Similarity=0.166 Sum_probs=136.5
Q ss_pred CChHHHHHHHHHHhhccChHHHHHHH---------HHHHhCCCCCChHHHHHHHHHHhccCc--HHHHHHHHHHHHhcCC
Q 037620 43 PDIKSYTILLEGWGQQKNLLSMNEVY---------REMKDDGFEPDVVSYGIMINAHCSAKR--YDEAVELFREMEATNC 111 (330)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~---------~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~ 111 (330)
|....+.+-+..|...|.+++|.++- +.+... ..+.-.++..=.+|.+..+ +-+.+.-++++.+.|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 33444555556677777777766532 111111 1122233444455655544 3344555666777776
Q ss_pred CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHH------------HHHHH-
Q 037620 112 KPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMM------------DEMRK- 178 (330)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~------------~~~~~- 178 (330)
.|+... +...++-.|.+.+|-++|.+--.. +..+.+|...+.++.|.+++ ++--+
T Consensus 632 ~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~e---------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~W 699 (1081)
T KOG1538|consen 632 TPNDLL---LADVFAYQGKFHEAAKLFKRSGHE---------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADW 699 (1081)
T ss_pred CchHHH---HHHHHHhhhhHHHHHHHHHHcCch---------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH
Confidence 676654 445666788888888888754222 12233333333344333333 22111
Q ss_pred -cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH---------hhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 037620 179 -CGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKR---------MSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMK 248 (330)
Q Consensus 179 -~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 248 (330)
.++... .+....+...|+.++|..+.-. +.. .-...+..+...+...+.+...+..|-++|..|-
T Consensus 700 Ar~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~r-kld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~g 774 (1081)
T KOG1538|consen 700 ARNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIAR-KLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMG 774 (1081)
T ss_pred hhhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHh-hcchhhhhHHHHHHHHHhhccccchHHHHHHHhc
Confidence 111111 1223344455666665543321 111 0112334455555666666777888888888764
Q ss_pred hCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCh-----------hhHHHHHHHHHhcCchHHHHHHHHHH
Q 037620 249 ARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPG-----------QLFSNLKQALRDEGMEETAVVLAQKI 317 (330)
Q Consensus 249 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~g~~~~a~~~~~~~ 317 (330)
+ ...+++.....++|++|..+.++.-+. .|+. .-|...-++|.++|+-.+|.++++++
T Consensus 775 D---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 775 D---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred c---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 3 334667788999999999998876542 2222 23455567888999999999999887
Q ss_pred HhcC
Q 037620 318 DKLR 321 (330)
Q Consensus 318 ~~~~ 321 (330)
....
T Consensus 844 tnna 847 (1081)
T KOG1538|consen 844 TNNA 847 (1081)
T ss_pred hhhh
Confidence 6543
No 236
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.60 E-value=0.06 Score=41.35 Aligned_cols=87 Identities=17% Similarity=0.132 Sum_probs=40.3
Q ss_pred hCCCHHHHHHHHHHHHhCCCC--ccHHHHHHHHHHHhccCChhHHHHHHHHHHhc-CCCC-ChhhHHHHHHHHHhcCchH
Q 037620 233 YNAQVDMAMRIWDEMKARGVL--PVMHMYSTLINSLCHEDKLDDACKYFQEMLDI-GIRP-PGQLFSNLKQALRDEGMEE 308 (330)
Q Consensus 233 ~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~ 308 (330)
+.|++..|..-|...++..+. -.+..+..|..++...|++++|...|..+.+. +-.| -+..+..|.....+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 444455555555555543211 11223444555555555555555555555432 1111 1234444555555555555
Q ss_pred HHHHHHHHHHh
Q 037620 309 TAVVLAQKIDK 319 (330)
Q Consensus 309 ~a~~~~~~~~~ 319 (330)
+|..+|+++.+
T Consensus 233 ~A~atl~qv~k 243 (262)
T COG1729 233 EACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 237
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.59 E-value=0.34 Score=40.24 Aligned_cols=81 Identities=10% Similarity=0.236 Sum_probs=63.7
Q ss_pred CCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHH
Q 037620 6 LKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGI 85 (330)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (330)
-|.|+..|-.|+..+..+|..++..+++++|.. ..|--..+|..-+++-...+++...+.+|.+.+... .+...|..
T Consensus 38 NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~-pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~l 114 (660)
T COG5107 38 NPTNILSYFQLIQYLETQESMDAEREMYEQLSS-PFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWML 114 (660)
T ss_pred CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcC-CCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHH
Confidence 466788899999999999999999999999987 345556778888887777888999999998888763 34555555
Q ss_pred HHHH
Q 037620 86 MINA 89 (330)
Q Consensus 86 ll~~ 89 (330)
.+..
T Consensus 115 Yl~Y 118 (660)
T COG5107 115 YLEY 118 (660)
T ss_pred HHHH
Confidence 4443
No 238
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.58 E-value=0.12 Score=34.95 Aligned_cols=60 Identities=15% Similarity=0.158 Sum_probs=25.4
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcC
Q 037620 261 TLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLR 321 (330)
Q Consensus 261 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (330)
..+......|+-++-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++.+.=+.|
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33344444455444444554444322 3444444455555555555555555555444444
No 239
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=0.22 Score=37.69 Aligned_cols=25 Identities=20% Similarity=0.293 Sum_probs=11.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHH
Q 037620 83 YGIMINAHCSAKRYDEAVELFREME 107 (330)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~ 107 (330)
|.....+|....++++|...+.+..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3333444545555555555444443
No 240
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.46 E-value=0.16 Score=35.07 Aligned_cols=77 Identities=10% Similarity=0.078 Sum_probs=45.0
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhc
Q 037620 192 LHHLIKAGRTEEAYSVFKRMSRKPGTEP-TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCH 268 (330)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 268 (330)
.....+.|++++|.+.|+.+..+....+ ....-..|+.+|.+.++++.|...++++++..+.....-|...+.+++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 3444566777777777777765333222 2234556677777777777777777777766543222334444444433
No 241
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=0.35 Score=38.54 Aligned_cols=152 Identities=13% Similarity=0.092 Sum_probs=91.5
Q ss_pred ccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHH----HHHHHHHhccCcHH
Q 037620 22 KSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSY----GIMINAHCSAKRYD 97 (330)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~ll~~~~~~~~~~ 97 (330)
..|++.+|-..++.+++ ..|.|..++...=.+|...|+...-...+++.... -.++...| ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~-d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLD-DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHH-hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 44666666666777766 45667777777777777777777777777776654 12333222 23334455677777
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCC---ChhhHHHHHHHHHhhCChhHHHHHHH
Q 037620 98 EAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEP---EAPTYNAVVGAYCWSMRINDAYRMMD 174 (330)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~ 174 (330)
+|.+.-++..+.+ +-|.....++...+-..|++.++.+++.+-...--.. -..-|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 7877777777766 6666666777777777777777777766543221000 00111112223445577777877776
Q ss_pred HH
Q 037620 175 EM 176 (330)
Q Consensus 175 ~~ 176 (330)
.-
T Consensus 272 ~e 273 (491)
T KOG2610|consen 272 RE 273 (491)
T ss_pred HH
Confidence 53
No 242
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.41 E-value=0.38 Score=38.83 Aligned_cols=111 Identities=12% Similarity=0.052 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHH
Q 037620 151 PTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRM 230 (330)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 230 (330)
.+.+..+.-+...|+...|.++-.+. . .|+...|...+.+++..++|++-..+-.. + -++.-|..++.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k-----KsPIGyepFv~~ 246 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS--K-----KSPIGYEPFVEA 246 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C-----CCCCChHHHHHH
Confidence 34555567777888888887775554 2 36889999999999999999988876542 1 234668889999
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHH
Q 037620 231 FCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEM 282 (330)
Q Consensus 231 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 282 (330)
|.+.|+..+|..+... +. +..-+..|.+.|++.+|.+...+.
T Consensus 247 ~~~~~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHCCCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999999998877 12 355678889999999998765544
No 243
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.37 E-value=0.17 Score=34.22 Aligned_cols=92 Identities=11% Similarity=-0.031 Sum_probs=64.7
Q ss_pred HHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCCh---HHHHHHHHHHhccC
Q 037620 53 EGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSP---HIFCTLINGLGSEK 129 (330)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~ 129 (330)
-+++..|+.+.|++.|.+.+..- +-....||.-..++.-.|+.++|+.-+++..+..-+.+. ..|.--...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34667788888888888887763 447788888888888888888888888877764312222 22333345567778
Q ss_pred cHHHHHHHHHHHHhcC
Q 037620 130 RLSEALQFFGQSKKRG 145 (330)
Q Consensus 130 ~~~~a~~~~~~~~~~~ 145 (330)
+.+.|..-|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888888887777766
No 244
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.33 E-value=0.021 Score=30.57 Aligned_cols=26 Identities=27% Similarity=0.116 Sum_probs=11.6
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 84 GIMINAHCSAKRYDEAVELFREMEAT 109 (330)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~~~ 109 (330)
..+...|.+.|++++|.++|+++.+.
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 245
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.30 E-value=0.21 Score=34.81 Aligned_cols=18 Identities=33% Similarity=0.174 Sum_probs=6.9
Q ss_pred HHHHHHcCCHHHHHHHHH
Q 037620 192 LHHLIKAGRTEEAYSVFK 209 (330)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~ 209 (330)
+..|.+.+.++++..++.
T Consensus 76 ~~~c~~~~l~~~~~~l~~ 93 (140)
T smart00299 76 GKLCEKAKLYEEAVELYK 93 (140)
T ss_pred HHHHHHcCcHHHHHHHHH
Confidence 333333333333333333
No 246
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.18 Score=40.06 Aligned_cols=152 Identities=11% Similarity=0.044 Sum_probs=89.7
Q ss_pred hccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc---CCCCChHHHHHHHHHHhccCcHHH
Q 037620 57 QQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEAT---NCKPSPHIFCTLINGLGSEKRLSE 133 (330)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~ 133 (330)
..|+..+|-..++++++. .+.|...+...=.+|.-.|+.+.....++++... ++|-.+.+...+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 345666666677777665 3446666666666777777777777777776644 222222333334445566778888
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHc---CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 037620 134 ALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC---GIGPNTRTYDIVLHHLIKAGRTEEAYSVFKR 210 (330)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (330)
|++.-++..+.+ +.|...-.+....+...+++.++.+...+-... +--.-...|--..-.+...+.++.|+.+|+.
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 888777777665 445666667777777777777777766543221 0000011122222334455777788777765
No 247
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.19 E-value=0.026 Score=30.15 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=9.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHh
Q 037620 226 IVVRMFCYNAQVDMAMRIWDEMKA 249 (330)
Q Consensus 226 ~l~~~~~~~~~~~~a~~~~~~~~~ 249 (330)
.+...|...|++++|+++|+++.+
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333344444444444444444433
No 248
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.18 E-value=0.61 Score=38.82 Aligned_cols=115 Identities=17% Similarity=0.204 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhhcCCCCCCchHHHHHHH----HHHHh---CCCHHHHHHHHHHHHhCCCCcc----HHHHHHHHH--HHh
Q 037620 201 TEEAYSVFKRMSRKPGTEPTVSTYEIVV----RMFCY---NAQVDMAMRIWDEMKARGVLPV----MHMYSTLIN--SLC 267 (330)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~--~~~ 267 (330)
-++|+.+++.+.+- .+-|...-+.+. ..|.+ ...+.+-..+-+-+.+.|+.|- ...-|.|.+ -+.
T Consensus 396 dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLy 473 (549)
T PF07079_consen 396 DEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLY 473 (549)
T ss_pred cHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHH
Confidence 67777887777652 112222222222 22222 2334444444445556676653 233344433 345
Q ss_pred ccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHh
Q 037620 268 HEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 319 (330)
Q Consensus 268 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (330)
..|++.++.-.-.-+. .+.|++.+|..+.-++....++++|..++.+++.
T Consensus 474 sqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred hcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 6888888876655555 4578999999999999999999999999988764
No 249
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.16 E-value=0.49 Score=37.56 Aligned_cols=123 Identities=16% Similarity=0.105 Sum_probs=60.0
Q ss_pred hhccChHHHHHHHHHHHhCCCCCChHHHHH-------HHHHHhccC-cHHHHHHHHHHHHhc--------CCCCC-----
Q 037620 56 GQQKNLLSMNEVYREMKDDGFEPDVVSYGI-------MINAHCSAK-RYDEAVELFREMEAT--------NCKPS----- 114 (330)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------ll~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~----- 114 (330)
.+.|+.+.|..++.+........++..... ........+ +++.|..++++..+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 467888888888888765421112222212 222233344 666666666654332 11111
Q ss_pred hHHHHHHHHHHhccCcHHH---HHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHc
Q 037620 115 PHIFCTLINGLGSEKRLSE---ALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179 (330)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (330)
..++..++.+|...+..+. |..+++.+... .+..+.++..-+..+.+.++.+.+.+++..|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 1344455555655555433 33344444332 1222334444455555556666666666666654
No 250
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.13 E-value=0.088 Score=40.64 Aligned_cols=89 Identities=20% Similarity=0.284 Sum_probs=53.9
Q ss_pred CCChHHHHHHHHHHhh-----ccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC----------------cHHHHH
Q 037620 42 DPDIKSYTILLEGWGQ-----QKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAK----------------RYDEAV 100 (330)
Q Consensus 42 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------------~~~~a~ 100 (330)
..|-.+|.+.+..+.. .+.++-....+..|.+-|+..|..+|+.|++.+-+.. +-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 3466666666665543 3556666667777777888888888888877665432 122345
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHhccCc
Q 037620 101 ELFREMEATNCKPSPHIFCTLINGLGSEKR 130 (330)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 130 (330)
+++++|...|+.||..+-..|++++.+.+-
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 555555555555555555555555555443
No 251
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.03 E-value=0.73 Score=38.40 Aligned_cols=128 Identities=15% Similarity=0.227 Sum_probs=66.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcC-CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhH-HHHHHH
Q 037620 82 SYGIMINAHCSAKRYDEAVELFREMEATN-CKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTY-NAVVGA 159 (330)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~ 159 (330)
.|...++...+..-.+.|..+|-++.+.+ +.++..++++++..++ .|+...|..+|+-=... .||...| +-.+..
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 34445555555555666666666666555 4455556666665444 35555566665543333 2233322 334445
Q ss_pred HHhhCChhHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 160 YCWSMRINDAYRMMDEMRKCGIGPN--TRTYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
+...++-+.|..+|+....+ +..+ ...|..+|..-..-|+...+..+=+++..
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 55556666666666643322 1111 34555666655566666655555555543
No 252
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.01 E-value=0.13 Score=40.19 Aligned_cols=59 Identities=15% Similarity=0.277 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 037620 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEM 247 (330)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 247 (330)
++..++..+...|+.+.+...++++.. -.+-+...|..++.+|.+.|+...|+..|+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 444444444444445555444444443 22233444444555555555555555444444
No 253
>PRK11906 transcriptional regulator; Provisional
Probab=95.98 E-value=0.8 Score=38.44 Aligned_cols=113 Identities=12% Similarity=0.076 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHH---hcCCCCChHHHHHHHHHHhc---------cCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhh
Q 037620 96 YDEAVELFREME---ATNCKPSPHIFCTLINGLGS---------EKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWS 163 (330)
Q Consensus 96 ~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (330)
.+.|+.+|.+.. +.+ |.....|..+..++.. ..+..+|.+...+..+.+ +.|......+..+....
T Consensus 274 ~~~Al~lf~ra~~~~~ld-p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQ-TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCC-cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 456777777766 322 2234444444333221 112233444444444443 23444444444444444
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 037620 164 MRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRM 211 (330)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (330)
++++.+...|++....+. ....+|......+.-.|+.++|.+.+++.
T Consensus 352 ~~~~~a~~~f~rA~~L~P-n~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 352 GQAKVSHILFEQAKIHST-DIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred cchhhHHHHHHHHhhcCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555554444321 12223333333334445555555555443
No 254
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.92 E-value=0.11 Score=40.06 Aligned_cols=90 Identities=22% Similarity=0.232 Sum_probs=72.3
Q ss_pred CCChhhHHHHHHHHHcc-----CChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhc----------------cChHHHH
Q 037620 7 KQELPDFNRLIDTLCKS-----RHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQ----------------KNLLSMN 65 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~ 65 (330)
+-|..+|-..+..+... +.++-....++.|.+.|+..|..+|+.|+..+-+. .+-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 34566777777777543 56777777888999999999999999999876543 2335689
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHhccCcH
Q 037620 66 EVYREMKDDGFEPDVVSYGIMINAHCSAKRY 96 (330)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (330)
+++++|...|+-||..+-..|++++.+.+-.
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 9999999999999999999999999887753
No 255
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.88 E-value=0.7 Score=36.94 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHcCCCCcHHHHH
Q 037620 168 DAYRMMDEMRKCGIGPNTRTYD 189 (330)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~ 189 (330)
.+.++++.+.+.|+++....|.
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp 221 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYP 221 (297)
T ss_pred HHHHHHHHHHHcCCcccccccc
Confidence 4445555555555554444433
No 256
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.86 E-value=0.7 Score=37.32 Aligned_cols=229 Identities=11% Similarity=0.115 Sum_probs=115.5
Q ss_pred HHccCChHHHHHHHHHHhhCC--CCCChHHHHHHHHHHhhccChHHHHHHHHHHHhC--CCCCCh---HHHHHHHHHHhc
Q 037620 20 LCKSRHVERAQEVFDKMKKRR--FDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDD--GFEPDV---VSYGIMINAHCS 92 (330)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~---~~~~~ll~~~~~ 92 (330)
+....+.++|+..+.....+- ...-..+|..+..+..+.|.+.+++..--.-+.. ...... ..|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777776665531 1112234556666677777766655432211111 111111 122333333433
Q ss_pred cCcHHHHHHHHHHHHhc-CCCCC---hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCC-----CCChhhHHHHHHHHHhh
Q 037620 93 AKRYDEAVELFREMEAT-NCKPS---PHIFCTLINGLGSEKRLSEALQFFGQSKKRGF-----EPEAPTYNAVVGAYCWS 163 (330)
Q Consensus 93 ~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~ 163 (330)
..++.+++.+-..-... |..|. -.....+..++...+.++++++.|+...+... .....++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 33444444443332221 22221 12333455666777777888877777654321 12234577777777777
Q ss_pred CChhHHHHHHHHHHH----cCCCCcHHHH-----HHHHHHHHHcCCHHHHHHHHHHhhcC---CCCCC-chHHHHHHHHH
Q 037620 164 MRINDAYRMMDEMRK----CGIGPNTRTY-----DIVLHHLIKAGRTEEAYSVFKRMSRK---PGTEP-TVSTYEIVVRM 230 (330)
Q Consensus 164 ~~~~~a~~~~~~~~~----~~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~-~~~~~~~l~~~ 230 (330)
.|+++|.-+..+..+ .++..=..-| ..|.-++...|....|.+..++..+- .|..+ .......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 788877766655433 2221111112 22333555667777777776665431 12221 23334556667
Q ss_pred HHhCCCHHHHHHHHHHHH
Q 037620 231 FCYNAQVDMAMRIWDEMK 248 (330)
Q Consensus 231 ~~~~~~~~~a~~~~~~~~ 248 (330)
|...|+.+.|+.-|+...
T Consensus 256 yR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhcccHhHHHHHHHHHH
Confidence 777777777776666543
No 257
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.85 E-value=0.89 Score=37.93 Aligned_cols=138 Identities=15% Similarity=0.162 Sum_probs=79.7
Q ss_pred HHccCChHHHHHHHHHHhhCCCCCChHH------HHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHH--HHh
Q 037620 20 LCKSRHVERAQEVFDKMKKRRFDPDIKS------YTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMIN--AHC 91 (330)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~~ 91 (330)
+-+.+++.+|..+|.++.+.. ..+... -+.++++|.. ++.+.....+..+.+. .| ...|-.+.. .+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 456788888888888887742 223222 2345566543 4566666666666554 22 222333332 344
Q ss_pred ccCcHHHHHHHHHHHHhc--CCCC------------ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCC----CCChhhH
Q 037620 92 SAKRYDEAVELFREMEAT--NCKP------------SPHIFCTLINGLGSEKRLSEALQFFGQSKKRGF----EPEAPTY 153 (330)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~ 153 (330)
+.+++.+|++.+..-.+. +..+ +-..=+..+.++...|.+.++..+++++...=+ .-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 677888888777665543 2111 111124456777788888888888777765432 3567777
Q ss_pred HHHHHHHHh
Q 037620 154 NAVVGAYCW 162 (330)
Q Consensus 154 ~~l~~~~~~ 162 (330)
+.++-.+.+
T Consensus 171 d~~vlmlsr 179 (549)
T PF07079_consen 171 DRAVLMLSR 179 (549)
T ss_pred HHHHHHHhH
Confidence 776655554
No 258
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.82 E-value=0.34 Score=32.87 Aligned_cols=140 Identities=13% Similarity=0.135 Sum_probs=65.3
Q ss_pred HHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHH
Q 037620 20 LCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEA 99 (330)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 99 (330)
+.-.|.+++..++....... .+..-+|-+|.-....-+-+-..++++..-+. .|... .|+....
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~----------C~NlKrV 75 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISK----------CGNLKRV 75 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-----------S-THHH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCchh----------hcchHHH
Confidence 34457788888888777663 24555555554444444444444444443221 12111 1222222
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHc
Q 037620 100 VELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179 (330)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (330)
...+-.+ ..........+......|.-+.-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.
T Consensus 76 i~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 76 IECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 2222111 1223334445556666666666666666665432 456666666666777777777777777766666
Q ss_pred CC
Q 037620 180 GI 181 (330)
Q Consensus 180 ~~ 181 (330)
|+
T Consensus 150 G~ 151 (161)
T PF09205_consen 150 GL 151 (161)
T ss_dssp T-
T ss_pred ch
Confidence 64
No 259
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.69 Score=36.25 Aligned_cols=51 Identities=10% Similarity=0.092 Sum_probs=24.3
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHH
Q 037620 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEM 176 (330)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (330)
....|++.+|...|....... +-+...--.+..+|...|+.+.|..++..+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 344455555555555544442 122333444455555555555555555544
No 260
>PRK11906 transcriptional regulator; Provisional
Probab=95.77 E-value=1 Score=37.90 Aligned_cols=82 Identities=12% Similarity=-0.019 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHH
Q 037620 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQ 140 (330)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 140 (330)
..+|.++-+...+.+ +-|......+..+..-.++++.|..+|++....+ |....+|......+.-.|+.++|.+.+++
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344555555555554 2355555555555555555666666666665554 33444444444444555666666666665
Q ss_pred HHhc
Q 037620 141 SKKR 144 (330)
Q Consensus 141 ~~~~ 144 (330)
..+.
T Consensus 398 alrL 401 (458)
T PRK11906 398 SLQL 401 (458)
T ss_pred Hhcc
Confidence 5444
No 261
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.76 E-value=0.41 Score=33.38 Aligned_cols=127 Identities=13% Similarity=0.172 Sum_probs=79.4
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHH
Q 037620 153 YNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFC 232 (330)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (330)
...++..+...+.+..+..+++.+...+. .+....+.++..|++.+ ..+....++. . .+......+++.|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--~-----~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN--K-----SNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--c-----cccCCHHHHHHHHH
Confidence 34566666667778888888888777653 56677778888887653 3444444442 1 12223345677788
Q ss_pred hCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcc-CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 037620 233 YNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHE-DKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRD 303 (330)
Q Consensus 233 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 303 (330)
+.+-++++..++.++.. +...+..+... ++.+.|.+++.+- .+...|..++..+..
T Consensus 81 ~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 81 KAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred HcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 88888888888876532 22233333333 7788888877652 256677777766653
No 262
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.73 E-value=0.19 Score=39.33 Aligned_cols=79 Identities=18% Similarity=0.227 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHH-----cCCCCcHHHHH
Q 037620 115 PHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRK-----CGIGPNTRTYD 189 (330)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 189 (330)
..++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3456666777777777777777777777664 45666777777777777777777777776644 56667666665
Q ss_pred HHHHH
Q 037620 190 IVLHH 194 (330)
Q Consensus 190 ~l~~~ 194 (330)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55555
No 263
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.66 E-value=0.71 Score=35.40 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=23.0
Q ss_pred HHHhccCChhHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCchHHHHHHHHH
Q 037620 264 NSLCHEDKLDDACKYFQEMLDIGIRPP---GQLFSNLKQALRDEGMEETAVVLAQK 316 (330)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~ 316 (330)
+-|.+.|.+..|..-+++|++. .+-+ ...+..+..+|.+.|-.++|.+.-+-
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v 229 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKV 229 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 3444555555555555555543 1111 22233344445555555554444433
No 264
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.61 E-value=1.3 Score=38.22 Aligned_cols=95 Identities=16% Similarity=0.182 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC--ccHHHHHHHH
Q 037620 186 RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL--PVMHMYSTLI 263 (330)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 263 (330)
.+|..-+.--...|+.+.+.-++++..- ....=...|-..+.-....|+.+-|..++....+--.+ |....+.+.+
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3444444444455555555555555433 11111122223333333335555555555444433222 2222222222
Q ss_pred HHHhccCChhHHHHHHHHHHh
Q 037620 264 NSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~~~~ 284 (330)
.-..|+++.|..+++...+
T Consensus 376 --~e~~~n~~~A~~~lq~i~~ 394 (577)
T KOG1258|consen 376 --EESNGNFDDAKVILQRIES 394 (577)
T ss_pred --HHhhccHHHHHHHHHHHHh
Confidence 2234566666666666654
No 265
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.56 E-value=1.7 Score=39.20 Aligned_cols=139 Identities=15% Similarity=0.152 Sum_probs=63.6
Q ss_pred HhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHH
Q 037620 55 WGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEA 134 (330)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 134 (330)
+.+.|++++|...|-+-+.. +.|. .++.-|.......+-..+++.+.+.| -.+.+.-..|+.+|.+.++.++.
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~g-la~~dhttlLLncYiKlkd~~kL 450 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKG-LANSDHTTLLLNCYIKLKDVEKL 450 (933)
T ss_pred HHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcc-cccchhHHHHHHHHHHhcchHHH
Confidence 34456666665555544432 1221 12333444455555555555555555 33444445566666666666555
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 037620 135 LQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRM 211 (330)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (330)
.++.+... .|.. ..-....+..+.+.+-.++|..+-..... +......++ -..+++++|++.++.+
T Consensus 451 ~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 451 TEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 55554433 2111 11123334444444444444443333221 222333332 2345566666665544
No 266
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.34 E-value=1.5 Score=37.16 Aligned_cols=55 Identities=11% Similarity=0.096 Sum_probs=26.8
Q ss_pred HHHHHhhCChhHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 037620 157 VGAYCWSMRINDAYRMMDEMRKCGIG-PNTRTYDIVLHHLIKAGRTEEAYSVFKRM 211 (330)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (330)
..++.+.|+.++|.+.+++|.+.... ........|+.++...+.+.++..++.+.
T Consensus 266 AmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 266 AMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 33344455555555555555443211 12234445555555555555555555554
No 267
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.31 E-value=0.7 Score=33.11 Aligned_cols=133 Identities=12% Similarity=0.042 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChH-HHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChH-HHHHH-
Q 037620 45 IKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVV-SYGIMINAHCSAKRYDEAVELFREMEATNCKPSPH-IFCTL- 121 (330)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l- 121 (330)
...|...+. +.+.+..++|+.-|.++.+.|...-+. ............|+-..|...|+++-.....|-.. -...|
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 344444444 344555666666666666654331111 11122334455666666666666665443222221 11111
Q ss_pred -HHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHH
Q 037620 122 -INGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRK 178 (330)
Q Consensus 122 -~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (330)
.-.+...|.++......+.+...+-+.....-..|.-+-.+.|++..|.+.|..+..
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 122345666666666666555544344444445555556666666666666666654
No 268
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.29 E-value=0.98 Score=34.66 Aligned_cols=175 Identities=13% Similarity=0.116 Sum_probs=85.7
Q ss_pred HHhccCcHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhh---
Q 037620 89 AHCSAKRYDEAVELFREMEATN--CKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWS--- 163 (330)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 163 (330)
.-.+.|++++|.+.|+.+.... -+-...+.-.++-++.+.++++.|...+++..+.-......-|...|.+++.-
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i 122 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQI 122 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccC
Confidence 3445677777777777776542 12234445555666677777777777777766553222223344444444321
Q ss_pred ----CChhHHHH---HHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC
Q 037620 164 ----MRINDAYR---MMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQ 236 (330)
Q Consensus 164 ----~~~~~a~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (330)
+|...+.. -|+.++.. . |++. =...|..-...+... =...=..+.+.|.+.|.
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~r-y-PnS~-------------Ya~dA~~~i~~~~d~-----LA~~Em~IaryY~kr~~ 182 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQR-Y-PNSR-------------YAPDAKARIVKLNDA-----LAGHEMAIARYYLKRGA 182 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHH-C-CCCc-------------chhhHHHHHHHHHHH-----HHHHHHHHHHHHHHhcC
Confidence 22222222 22333322 1 1210 001111111111100 00001245566777788
Q ss_pred HHHHHHHHHHHHhCCCC--ccHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 037620 237 VDMAMRIWDEMKARGVL--PVMHMYSTLINSLCHEDKLDDACKYFQEML 283 (330)
Q Consensus 237 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (330)
+..|..-++++.+.-.. -....+-.+..+|...|-.++|.+.-+-+.
T Consensus 183 ~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 183 YVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred hHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 88777777777765111 122345556667777777777776655554
No 269
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.27 E-value=0.37 Score=35.21 Aligned_cols=61 Identities=11% Similarity=0.097 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHhCCCCCC--hHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 037620 47 SYTILLEGWGQQKNLLSMNEVYREMKDDGFEPD--VVSYGIMINAHCSAKRYDEAVELFREME 107 (330)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 107 (330)
.+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+++...-.+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455556666666666666666666655432222 2334445555555666666655555544
No 270
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.16 E-value=1.8 Score=36.89 Aligned_cols=180 Identities=9% Similarity=0.051 Sum_probs=123.5
Q ss_pred CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHH
Q 037620 77 EPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAV 156 (330)
Q Consensus 77 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (330)
..|.....+++..+..+..+.-+..+..+|...| .+...|..++.+|... ..+.-..+++++.+..+. |+..-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 4577777888888888888888888888888765 5677788888888887 557778888888877542 44444455
Q ss_pred HHHHHhhCChhHHHHHHHHHHHcCCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH
Q 037620 157 VGAYCWSMRINDAYRMMDEMRKCGIGP-----NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMF 231 (330)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (330)
...|-+ ++.+.+...|.++...-++- -...|..+... -..+.+....+...+..+.|...-...+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 555544 77788888887776542220 11244444432 24567777777777777666666666777777888
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 037620 232 CYNAQVDMAMRIWDEMKARGVLPVMHMYSTLIN 264 (330)
Q Consensus 232 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 264 (330)
....++.+|++++..+.+++-+ |.-.-..++.
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~ 247 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEK-DVWARKEIIE 247 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcch-hhhHHHHHHH
Confidence 8888999999999887776544 4434444443
No 271
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.08 E-value=0.84 Score=32.74 Aligned_cols=29 Identities=3% Similarity=0.091 Sum_probs=13.8
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhhCCh
Q 037620 138 FGQSKKRGFEPEAPTYNAVVGAYCWSMRI 166 (330)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (330)
+..+.+.+++|+...+..++..+.+.|++
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 33344444445555555555555555443
No 272
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.03 E-value=1.1 Score=33.89 Aligned_cols=224 Identities=13% Similarity=0.036 Sum_probs=140.2
Q ss_pred ccChHHHHHHHHHHHhCCCC-CChHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CCCCChHHHHHHHHHHhccCcHHHHH
Q 037620 58 QKNLLSMNEVYREMKDDGFE-PDVVSYGIMINAHCSAKRYDEAVELFREMEAT-NCKPSPHIFCTLINGLGSEKRLSEAL 135 (330)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 135 (330)
.+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35566666666666655322 12566667777788888888888888777652 23555666777777777788888888
Q ss_pred HHHHHHHhcCCCCChhhHHHHHH-HHHhhCChhHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 037620 136 QFFGQSKKRGFEPEAPTYNAVVG-AYCWSMRINDAYRMMDEMRKCGI--GPNTRTYDIVLHHLIKAGRTEEAYSVFKRMS 212 (330)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (330)
+.+.........+ ......... .+...|+++.+...+........ ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888877654332 122222333 67778888888888888755221 1123344444444566778888888888776
Q ss_pred cCCCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhc
Q 037620 213 RKPGTEP-TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDI 285 (330)
Q Consensus 213 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 285 (330)
.. ... ....+..+...+...++++.+...+......... ....+..+...+...+..+.+...+.+....
T Consensus 195 ~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 52 222 3556667777777777788888888777665322 2333444444444566677777777777654
No 273
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.01 E-value=0.55 Score=34.30 Aligned_cols=63 Identities=17% Similarity=0.234 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCc--hHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 037620 186 RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPT--VSTYEIVVRMFCYNAQVDMAMRIWDEMKA 249 (330)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 249 (330)
..+..+...|.+.|+.+.|.+.|.++.+ ....+. ...+..+++.....+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~-~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARD-YCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhh-hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455666666666666666666666654 222222 22344555666666666666666655443
No 274
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.99 E-value=1.5 Score=35.13 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHH
Q 037620 239 MAMRIWDEMKARGVLPVMHMYSTL 262 (330)
Q Consensus 239 ~a~~~~~~~~~~~~~~~~~~~~~l 262 (330)
++.++++.+.+.|+++....|..+
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHcCCccccccccHH
Confidence 555555666666655555444443
No 275
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.98 E-value=0.85 Score=32.31 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=9.1
Q ss_pred HhCCCHHHHHHHHHHHHh
Q 037620 232 CYNAQVDMAMRIWDEMKA 249 (330)
Q Consensus 232 ~~~~~~~~a~~~~~~~~~ 249 (330)
...|++.+|+.+|+++.+
T Consensus 55 i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHhCCHHHHHHHHHHHhc
Confidence 445555555555555443
No 276
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.92 E-value=0.0015 Score=45.93 Aligned_cols=45 Identities=9% Similarity=0.066 Sum_probs=16.2
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHH
Q 037620 127 SEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYR 171 (330)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (330)
+.+.+.....+++.+...+...+....+.++..|++.++.+...+
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~ 63 (143)
T PF00637_consen 19 ERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLE 63 (143)
T ss_dssp TTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHH
T ss_pred hCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHH
Confidence 333333333334333333222233333444444444433333333
No 277
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.90 E-value=0.96 Score=32.46 Aligned_cols=136 Identities=13% Similarity=0.168 Sum_probs=89.3
Q ss_pred ChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchH-HHHH
Q 037620 149 EAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTR-TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVS-TYEI 226 (330)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~ 226 (330)
+...|..-++ +.+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-..... |-.. -..-
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~AR 135 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLAR 135 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHH
Confidence 3445555554 456788899999999998876542221 1222334456789999999999998773332 3222 1111
Q ss_pred H--HHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 037620 227 V--VRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 227 l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 286 (330)
| .-.+..+|.++....-.+-+...+-+.....-..|.-+-.+.|++.+|.++|..+.+..
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 1 23456788888888877776655444344455667777788999999999999887643
No 278
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.89 E-value=0.034 Score=27.76 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=12.1
Q ss_pred CCChHHHHHHHHHHhccCcHHHH
Q 037620 112 KPSPHIFCTLINGLGSEKRLSEA 134 (330)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a 134 (330)
|-+..+|+.+...|...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 44455555555555555555554
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.73 E-value=0.035 Score=28.12 Aligned_cols=23 Identities=13% Similarity=0.330 Sum_probs=10.5
Q ss_pred HHHHHHHHhccCChhHHHHHHHH
Q 037620 259 YSTLINSLCHEDKLDDACKYFQE 281 (330)
Q Consensus 259 ~~~l~~~~~~~~~~~~a~~~~~~ 281 (330)
|..|...|.+.|++++|+.++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444555555544444
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.71 E-value=0.082 Score=26.73 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHH
Q 037620 294 FSNLKQALRDEGMEETAVVLAQKID 318 (330)
Q Consensus 294 ~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (330)
|..|...|.+.|++++|+.++++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5567777777777777777777744
No 281
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.69 E-value=1.4 Score=33.35 Aligned_cols=223 Identities=13% Similarity=0.049 Sum_probs=111.7
Q ss_pred CChHHHHHHHHHHhhCCCC-CChHHHHHHHHHHhhccChHHHHHHHHHHHhC-CCCCChHHHHHHHHHHhccCcHHHHHH
Q 037620 24 RHVERAQEVFDKMKKRRFD-PDIKSYTILLEGWGQQKNLLSMNEVYREMKDD-GFEPDVVSYGIMINAHCSAKRYDEAVE 101 (330)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~ 101 (330)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444442211 02345555555666666666666666665541 123344455555555556666666666
Q ss_pred HHHHHHhcCCCCChHHHHHHHH-HHhccCcHHHHHHHHHHHHhcCC--CCChhhHHHHHHHHHhhCChhHHHHHHHHHHH
Q 037620 102 LFREMEATNCKPSPHIFCTLIN-GLGSEKRLSEALQFFGQSKKRGF--EPEAPTYNAVVGAYCWSMRINDAYRMMDEMRK 178 (330)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (330)
.+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666665543222 122222222 56666666666666666644211 01222333333334455666666666666665
Q ss_pred cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 037620 179 CGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPT-VSTYEIVVRMFCYNAQVDMAMRIWDEMKAR 250 (330)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 250 (330)
.........+..+...+...++++.+...+..... ..|+ ...+..+...+...+..+.+...+......
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE---LDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh---hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 42111245555566666666666666666666654 1121 223333333333455566666666655544
No 282
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.60 E-value=0.32 Score=38.33 Aligned_cols=103 Identities=17% Similarity=0.120 Sum_probs=54.7
Q ss_pred CCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcC---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCch
Q 037620 145 GFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG---IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTV 221 (330)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 221 (330)
|.+....+...++..-....+++.+...+-+++... ..++. +-...++.+ ..-++++++.++..-.+ .|+.||-
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npIq-YGiF~dq 135 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQ-YGIFPDQ 135 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcch-hccccch
Confidence 334444455555554455566666666666665431 11111 111122222 22355566666655554 5666777
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 037620 222 STYEIVVRMFCYNAQVDMAMRIWDEMKAR 250 (330)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 250 (330)
++++.+++.+.+.+++..|.++...|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 77777777777777766666666665544
No 283
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.58 E-value=2.2 Score=35.17 Aligned_cols=66 Identities=14% Similarity=0.104 Sum_probs=49.2
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---CchHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 037620 183 PNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTE---PTVSTYEIVVRMFCYNAQVDMAMRIWDEMKA 249 (330)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 249 (330)
....+|..++..+.+.|+++.|...+..+... ... ..+.....-+...-..|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~-~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQL-NPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhcc-CCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567888899999999999999999988762 211 1233334456667788999999999988877
No 284
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.58 E-value=1 Score=31.27 Aligned_cols=55 Identities=11% Similarity=0.143 Sum_probs=26.7
Q ss_pred HhccCcHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 90 HCSAKRYDEAVELFREMEATN--CKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
..+.|++++|.+.|+.+...- -+-...+-..++.+|.+.+++++|...+++.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 334455555555555554431 0112333344555555555555555555555554
No 285
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=0.46 Score=37.50 Aligned_cols=48 Identities=13% Similarity=0.214 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 037620 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEA 108 (330)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 108 (330)
.++++.++..=+.-|+-||.++++.++..+.+.+++.+|.++.-.|..
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 445555554444445555555555555555555555555555444443
No 286
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=94.51 E-value=1.8 Score=33.96 Aligned_cols=137 Identities=9% Similarity=0.135 Sum_probs=84.6
Q ss_pred ChhHHHHHHHHHHH-cCCCCcHHHHHHHHHHHHH-c-CCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHH
Q 037620 165 RINDAYRMMDEMRK-CGIGPNTRTYDIVLHHLIK-A-GRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAM 241 (330)
Q Consensus 165 ~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 241 (330)
...+|+++|+.... ..+--|..+...+++.... . .....-.++.+-+....+..++..+...++..++..+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34555666653221 2234466677777766655 2 1333344455555554456677777788889999999999999
Q ss_pred HHHHHHHhC-CCCccHHHHHHHHHHHhccCChhHHHHHHHHH-----HhcCCCCChhhHHHHHHHH
Q 037620 242 RIWDEMKAR-GVLPVMHMYSTLINSLCHEDKLDDACKYFQEM-----LDIGIRPPGQLFSNLKQAL 301 (330)
Q Consensus 242 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~l~~~~ 301 (330)
++|+..... +..-|...|..+|+.....|+..-..++..+= ...++..+...-..+-+.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 999887655 55667788999999999999876555554431 1234444444444443333
No 287
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.45 E-value=1.7 Score=33.23 Aligned_cols=57 Identities=11% Similarity=0.187 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC--CCchHHHHHHHHHHHhCCCHHHHHHHH
Q 037620 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGT--EPTVSTYEIVVRMFCYNAQVDMAMRIW 244 (330)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~ 244 (330)
.|...|-.+....++..|...++.-.+-++. ..+..+...|+.+| ..|+.+++..++
T Consensus 192 ~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 192 AYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 3445555555666677777777664332222 22344555666554 445555554443
No 288
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.37 E-value=2.3 Score=34.54 Aligned_cols=130 Identities=19% Similarity=0.159 Sum_probs=84.7
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcC-----CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc----CCCCChhhHH
Q 037620 84 GIMINAHCSAKRYDEAVELFREMEATN-----CKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR----GFEPEAPTYN 154 (330)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~ 154 (330)
.++..++...+.++++++.|+...... ....-.++..|...|.+..++++|.-+..+..+. ++..-..-|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 446677777788999999988875431 1223467888888999999999988877665442 2211111222
Q ss_pred -----HHHHHHHhhCChhHHHHHHHHHHH----cCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 155 -----AVVGAYCWSMRINDAYRMMDEMRK----CGIGP-NTRTYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 155 -----~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
.+.-++...|....|.+.-++..+ .|-++ -......+.+.|...|+.+.|+.-|+....
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 233445667888888888777654 33222 123445566778888999998888887755
No 289
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=94.19 E-value=0.91 Score=29.21 Aligned_cols=60 Identities=8% Similarity=0.120 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 037620 239 MAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQ 299 (330)
Q Consensus 239 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 299 (330)
+..+-+..+....+.|++....+.+++|.+.+++..|+++++....+- .+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 556666666677777888888888888888888888888887776532 223335655554
No 290
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.17 E-value=5.3 Score=37.89 Aligned_cols=80 Identities=18% Similarity=0.227 Sum_probs=37.0
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCCh
Q 037620 193 HHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKL 272 (330)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 272 (330)
..+...+.+++|--.|+..-+ ..-.+.+|..+|+|.+|..+..++....-. -..+-..|+.-+...++.
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e~~kh 1015 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVEQRKH 1015 (1265)
T ss_pred HHHHHhccccHHHHHHHHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHHcccc
Confidence 333444555555555554322 122345555666666666655554322100 111123444555555555
Q ss_pred hHHHHHHHHHH
Q 037620 273 DDACKYFQEML 283 (330)
Q Consensus 273 ~~a~~~~~~~~ 283 (330)
-+|-++..+..
T Consensus 1016 ~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1016 YEAAKILLEYL 1026 (1265)
T ss_pred hhHHHHHHHHh
Confidence 55555555443
No 291
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.16 E-value=0.58 Score=29.73 Aligned_cols=47 Identities=9% Similarity=0.146 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 167 NDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
-++.+-++.+....+.|++....+.+++|.+.+++..|.++|+.++.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34555555555566666666666666666666666666666666654
No 292
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.13 E-value=1.8 Score=32.41 Aligned_cols=163 Identities=13% Similarity=0.081 Sum_probs=81.4
Q ss_pred CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCC-CcHHHHHH
Q 037620 112 KPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIG-PNTRTYDI 190 (330)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 190 (330)
|.-+.+||.+.-.+...|+++.|.+.|+...+.+..-+-...|.-| ++.--|+++-|.+-+...-+.+.. |-...|.-
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY 174 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY 174 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHH
Confidence 4456677777777778888888888888877764222222222222 223356777777666555544321 11122222
Q ss_pred HHHHHHHcCCHHHHHHHH-HHhhcCCCCCCchHHHHHHH-HHHHhCCCHHHHHHHHHHHHhCCCC------ccHHHHHHH
Q 037620 191 VLHHLIKAGRTEEAYSVF-KRMSRKPGTEPTVSTYEIVV-RMFCYNAQVDMAMRIWDEMKARGVL------PVMHMYSTL 262 (330)
Q Consensus 191 l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~l 262 (330)
+.. ..-++.+|..-+ ++... .|..-|...+ ..|...=.. ..+++++++..-. .=..||-.+
T Consensus 175 l~E---~k~dP~~A~tnL~qR~~~-----~d~e~WG~~iV~~yLgkiS~---e~l~~~~~a~a~~n~~~Ae~LTEtyFYL 243 (297)
T COG4785 175 LNE---QKLDPKQAKTNLKQRAEK-----SDKEQWGWNIVEFYLGKISE---ETLMERLKADATDNTSLAEHLTETYFYL 243 (297)
T ss_pred HHH---hhCCHHHHHHHHHHHHHh-----ccHhhhhHHHHHHHHhhccH---HHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 221 223444444333 33322 1222333222 222221111 2223333221100 013567778
Q ss_pred HHHHhccCChhHHHHHHHHHHhcC
Q 037620 263 INSLCHEDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 263 ~~~~~~~~~~~~a~~~~~~~~~~~ 286 (330)
.+-+...|+.++|..+|+-.+..+
T Consensus 244 ~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 244 GKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHhccccHHHHHHHHHHHHHHh
Confidence 888888888888888888777544
No 293
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.11 E-value=0.065 Score=26.72 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=9.4
Q ss_pred ChhhHHHHHHHHHhcCchHHH
Q 037620 290 PGQLFSNLKQALRDEGMEETA 310 (330)
Q Consensus 290 ~~~~~~~l~~~~~~~g~~~~a 310 (330)
+...|..+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 344444444444444444444
No 294
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.90 E-value=2.4 Score=32.94 Aligned_cols=50 Identities=12% Similarity=0.044 Sum_probs=28.8
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChH---HHHHHHHHHhccCcHHHHHHHHHHHH
Q 037620 93 AKRYDEAVELFREMEATNCKPSPH---IFCTLINGLGSEKRLSEALQFFGQSK 142 (330)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (330)
..++++|+.-|+++.+..-..... +...++..+.+.+++++....+.++.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 346777777777776543122222 23344566667777777666666654
No 295
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.89 E-value=0.87 Score=28.97 Aligned_cols=46 Identities=9% Similarity=0.148 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 037620 62 LSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREME 107 (330)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 107 (330)
-++.+-++.+......|++....+.+++|.+.+++..|.++|+-++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444455555555555566666666666666666666666665554
No 296
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.59 E-value=4.1 Score=34.71 Aligned_cols=84 Identities=15% Similarity=0.065 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCC-cHHHHHHHHH
Q 037620 116 HIFCTLINGLGSEKRLSEALQFFGQSKKRGFE-PEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGP-NTRTYDIVLH 193 (330)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 193 (330)
.+-..+..++.+.|+.++|.+.+.++.+.... ........|+.++...+.+.++..++.+-.+...+. -...|+..+-
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 33455677778889999999999998765311 234467788999999999999999998876543322 2345665544
Q ss_pred HHHHcC
Q 037620 194 HLIKAG 199 (330)
Q Consensus 194 ~~~~~~ 199 (330)
-+...+
T Consensus 340 kaRav~ 345 (539)
T PF04184_consen 340 KARAVG 345 (539)
T ss_pred HHHhhc
Confidence 444343
No 297
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.51 E-value=1.3 Score=28.57 Aligned_cols=45 Identities=11% Similarity=0.145 Sum_probs=19.5
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHh
Q 037620 29 AQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKD 73 (330)
Q Consensus 29 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (330)
..+-++.+....+.|++....+.+++|.+.+++..|.++|+-.+.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444444444555555555555555555555555544443
No 298
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.42 E-value=1.7 Score=32.08 Aligned_cols=97 Identities=13% Similarity=0.132 Sum_probs=68.9
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCCC---chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcc
Q 037620 193 HHLIKAGRTEEAYSVFKRMSRKPGTEP---TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHE 269 (330)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 269 (330)
.-+...|++++|..-|..........+ ....|..-..++.+.+.++.|+.-....++.+.. .......-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 456789999999999998876221111 1234555566778889999999888888877644 333344445678889
Q ss_pred CChhHHHHHHHHHHhcCCCCChh
Q 037620 270 DKLDDACKYFQEMLDIGIRPPGQ 292 (330)
Q Consensus 270 ~~~~~a~~~~~~~~~~~~~~~~~ 292 (330)
..+++|+.=|+++++.. |...
T Consensus 182 ek~eealeDyKki~E~d--Ps~~ 202 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD--PSRR 202 (271)
T ss_pred hhHHHHHHHHHHHHHhC--cchH
Confidence 99999999999998764 4443
No 299
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.41 E-value=0.29 Score=24.11 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=14.0
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 258 MYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 258 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344555555555555555555555543
No 300
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.27 E-value=2.4 Score=31.43 Aligned_cols=80 Identities=9% Similarity=0.063 Sum_probs=60.0
Q ss_pred HHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc---CCCCChHHHHHHHHHHhccCc
Q 037620 54 GWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEAT---NCKPSPHIFCTLINGLGSEKR 130 (330)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~ 130 (330)
.+.+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.++++.++.+..+. +-.+|+..+..|+..+.+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3455554 678888888887765545566555555554 67889999999887754 236789999999999999999
Q ss_pred HHHHH
Q 037620 131 LSEAL 135 (330)
Q Consensus 131 ~~~a~ 135 (330)
++.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 99875
No 301
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.18 E-value=0.32 Score=23.81 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=11.4
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHH
Q 037620 259 YSTLINSLCHEDKLDDACKYFQEML 283 (330)
Q Consensus 259 ~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (330)
+..+...+...|++++|++.+++.+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3344444444555555555544444
No 302
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.11 E-value=8.2 Score=36.72 Aligned_cols=117 Identities=17% Similarity=0.196 Sum_probs=65.9
Q ss_pred CCChhhHHHHH----HHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchH
Q 037620 147 EPEAPTYNAVV----GAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVS 222 (330)
Q Consensus 147 ~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 222 (330)
.|+...+.... ..+.....+++|.-.|+..-+ ....+.+|...|+|++|..+..++.. +..--..
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~--~~de~~~ 1000 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE--GKDELVI 1000 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC--CHHHHHH
Confidence 34544444433 334445666666666554322 12346777788888888888887654 1111111
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHH
Q 037620 223 TYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEM 282 (330)
Q Consensus 223 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 282 (330)
+-..|+.-+...+++-+|-++..+.... ....+..+++...|++|+.+....
T Consensus 1001 ~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1001 LAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 2255667777788888888777776543 222333445555666666655443
No 303
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.07 E-value=2.9 Score=31.40 Aligned_cols=181 Identities=11% Similarity=0.034 Sum_probs=103.0
Q ss_pred cChHHHHHHHHHHHhCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHH
Q 037620 59 KNLLSMNEVYREMKDDGFEP-DVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQF 137 (330)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 137 (330)
|-+.-|.-=|.+.... .| -+..||-+.-.+...|+++.|.+.|+...+.+ |....+...-.-.+.-.|++.-|.+-
T Consensus 79 GL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~y~Ya~lNRgi~~YY~gR~~LAq~d 155 (297)
T COG4785 79 GLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRYKLAQDD 155 (297)
T ss_pred hHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC-CcchHHHhccceeeeecCchHhhHHH
Confidence 4444444445554443 34 46778888888899999999999999999887 33333333333344557899999887
Q ss_pred HHHHHhcCCCCChhhHHHH-HHHHHhhCChhHHHHH-HHHHHHcCCCCcHHHHHHHHH-HHHHcCCHHHHHHHHHHhhcC
Q 037620 138 FGQSKKRGFEPEAPTYNAV-VGAYCWSMRINDAYRM-MDEMRKCGIGPNTRTYDIVLH-HLIKAGRTEEAYSVFKRMSRK 214 (330)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~ 214 (330)
+.+..+.+ +.|+ |.++ +-.--..-++.+|..- .++..+. |..-|...|- .|...=..+. +++++...
T Consensus 156 ~~~fYQ~D-~~DP--fR~LWLYl~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e~---l~~~~~a~ 225 (297)
T COG4785 156 LLAFYQDD-PNDP--FRSLWLYLNEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEET---LMERLKAD 225 (297)
T ss_pred HHHHHhcC-CCCh--HHHHHHHHHHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHHH---HHHHHHhh
Confidence 77776653 2222 2222 1111223355555543 3333332 3334443332 2222212222 23333321
Q ss_pred CCC-----CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 037620 215 PGT-----EPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV 252 (330)
Q Consensus 215 ~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 252 (330)
... ..=..||--+...+...|+.++|..+|+-.+..++
T Consensus 226 a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 226 ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 010 01124677788889999999999999998887644
No 304
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.80 E-value=3.9 Score=32.21 Aligned_cols=81 Identities=9% Similarity=0.115 Sum_probs=44.4
Q ss_pred CCChhhHHHHHHHHHhhCChhHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh----cCCCCCCch
Q 037620 147 EPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC-GIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMS----RKPGTEPTV 221 (330)
Q Consensus 147 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~ 221 (330)
.++..+...++..++..+++....++++..... +...|...|..+|......|+..-...+.+.-. ++.++..+.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~ 278 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTD 278 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCH
Confidence 445555556666666666666666666555443 344455666666666666666666555555421 224454444
Q ss_pred HHHHHH
Q 037620 222 STYEIV 227 (330)
Q Consensus 222 ~~~~~l 227 (330)
..-..+
T Consensus 279 ~L~~~L 284 (292)
T PF13929_consen 279 ELRSQL 284 (292)
T ss_pred HHHHHH
Confidence 443333
No 305
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.63 E-value=1.9 Score=31.88 Aligned_cols=79 Identities=10% Similarity=0.107 Sum_probs=49.1
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhc---CCCCChhhHHHHHHHHHhcCch
Q 037620 231 FCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDI---GIRPPGQLFSNLKQALRDEGME 307 (330)
Q Consensus 231 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~ 307 (330)
+.+.|+ +.|.+.|-.+...+..-++.....|...|. ..+.+++..++.+.++. +-.+|+..+..|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344444 456666666665554445555555555444 56677777777776642 2256677777777777777777
Q ss_pred HHHH
Q 037620 308 ETAV 311 (330)
Q Consensus 308 ~~a~ 311 (330)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 7764
No 306
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=92.58 E-value=1.3 Score=33.07 Aligned_cols=77 Identities=10% Similarity=0.013 Sum_probs=51.8
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCC--CCCChHHHHHHHHH
Q 037620 12 DFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDG--FEPDVVSYGIMINA 89 (330)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~ 89 (330)
+.+..++.+.+.+++++|+...+.-.+.+ |.|...-..++..++-.|+|++|..-++-.-... ..+-..+|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44556677778888888888777766643 4466667777888888888888877766665442 23345566666654
No 307
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.53 E-value=0.41 Score=23.55 Aligned_cols=25 Identities=20% Similarity=0.285 Sum_probs=9.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHH
Q 037620 118 FCTLINGLGSEKRLSEALQFFGQSK 142 (330)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (330)
|..+..+|...|++++|+..+++..
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 3333444444444444444444433
No 308
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.52 E-value=2.8 Score=29.81 Aligned_cols=15 Identities=33% Similarity=0.671 Sum_probs=6.2
Q ss_pred ccCcHHHHHHHHHHH
Q 037620 92 SAKRYDEAVELFREM 106 (330)
Q Consensus 92 ~~~~~~~a~~~~~~~ 106 (330)
..|+|.+|.++|+++
T Consensus 56 ~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 56 VRGDWDDALRLLREL 70 (160)
T ss_pred HhCCHHHHHHHHHHH
Confidence 334444444444443
No 309
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.08 E-value=6 Score=32.61 Aligned_cols=189 Identities=13% Similarity=0.104 Sum_probs=102.4
Q ss_pred HHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCC---C-CCChHHHHHHHHHHh
Q 037620 16 LIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDG---F-EPDVVSYGIMINAHC 91 (330)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~-~~~~~~~~~ll~~~~ 91 (330)
...+..+.|+++...+........ .++...+.++... ..++++++....+.....- . ......|........
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 356778889999866666555432 2355555555544 7889998888887776541 0 011122222222222
Q ss_pred ccC---cHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc-----cCcH---HHHHHHHHHHHh--cCCCCChhhHHHHHH
Q 037620 92 SAK---RYDEAVELFREMEATNCKPSPHIFCTLINGLGS-----EKRL---SEALQFFGQSKK--RGFEPEAPTYNAVVG 158 (330)
Q Consensus 92 ~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~---~~a~~~~~~~~~--~~~~~~~~~~~~l~~ 158 (330)
+.. +++++.++...... +......++..... ..++ +..+.+-..+.+ ........++..+.+
T Consensus 80 ~lq~L~Elee~~~~~~~~~~-----~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~ 154 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLSQ-----NPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAK 154 (352)
T ss_pred HHhHHHHHHHHHHHHHhhcc-----cHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 222 23333333211100 01111111111100 1111 111211122222 112345567888899
Q ss_pred HHHhhCChhHHHHHHHHHHHcCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 159 AYCWSMRINDAYRMMDEMRKCGIGP---NTRTYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
.+.+.|.++.|...+..+...+... .+.....-+...-..|+..+|+..++....
T Consensus 155 ~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 155 LARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999988754221 344555556677788999999999998876
No 310
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=91.89 E-value=3 Score=29.17 Aligned_cols=100 Identities=12% Similarity=0.107 Sum_probs=63.9
Q ss_pred HHHhhCCCCCChH--HHHHHHHHHhhccChHHHHHHHHHHHhCCC-----CCChHHHHHHHHHHhccCc-HHHHHHHHHH
Q 037620 34 DKMKKRRFDPDIK--SYTILLEGWGQQKNLLSMNEVYREMKDDGF-----EPDVVSYGIMINAHCSAKR-YDEAVELFRE 105 (330)
Q Consensus 34 ~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~ 105 (330)
..|.+.+..++.. ..+.++......+++.....+++.+..... ..+...|..++.+..+... ---+..+|.-
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~ 105 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNF 105 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHH
Confidence 3344444444442 356666666666777777777666643210 2366788888888866655 3456777787
Q ss_pred HHhcCCCCChHHHHHHHHHHhccCcHHH
Q 037620 106 MEATNCKPSPHIFCTLINGLGSEKRLSE 133 (330)
Q Consensus 106 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (330)
+.+.+.+.++.-|..++.++.+....+.
T Consensus 106 Lk~~~~~~t~~dy~~li~~~l~g~~~~~ 133 (145)
T PF13762_consen 106 LKKNDIEFTPSDYSCLIKAALRGYFHDS 133 (145)
T ss_pred HHHcCCCCCHHHHHHHHHHHHcCCCCcc
Confidence 8777778888888888888776544433
No 311
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.85 E-value=0.54 Score=22.96 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=9.2
Q ss_pred HHHHHHhccCcHHHHHHHHHHHH
Q 037620 120 TLINGLGSEKRLSEALQFFGQSK 142 (330)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~ 142 (330)
.+..++...|++++|.+.+++..
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 33344444444444444444433
No 312
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.83 E-value=0.11 Score=36.49 Aligned_cols=84 Identities=6% Similarity=0.114 Sum_probs=44.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccC
Q 037620 191 VLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHED 270 (330)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 270 (330)
++..+.+.+.++....+++.+.. .+...+....+.++..|++.++.+...++++.. +..-...+++.|.+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~-~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVK-ENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHH-TSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHh-cccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 44455555666666666666664 233344555666666666666556665555511 1112334555556666
Q ss_pred ChhHHHHHHHHH
Q 037620 271 KLDDACKYFQEM 282 (330)
Q Consensus 271 ~~~~a~~~~~~~ 282 (330)
.+++|.-++.++
T Consensus 85 l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 85 LYEEAVYLYSKL 96 (143)
T ss_dssp SHHHHHHHHHCC
T ss_pred hHHHHHHHHHHc
Confidence 666666666654
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.61 E-value=0.45 Score=24.63 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHhh
Q 037620 11 PDFNRLIDTLCKSRHVERAQEVFDKMKK 38 (330)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~ 38 (330)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455566666666666666666655443
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.60 E-value=0.52 Score=24.37 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=14.4
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHH
Q 037620 258 MYSTLINSLCHEDKLDDACKYFQEML 283 (330)
Q Consensus 258 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (330)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45555555566666666666655554
No 315
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.51 E-value=9.7 Score=33.87 Aligned_cols=176 Identities=14% Similarity=0.170 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHhhCCCCCChHHHHHHHHH-----HhhccChHHHHHHHHHHHh-------CCCCCChHHHHHHHHHHhcc
Q 037620 26 VERAQEVFDKMKKRRFDPDIKSYTILLEG-----WGQQKNLLSMNEVYREMKD-------DGFEPDVVSYGIMINAHCSA 93 (330)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~ 93 (330)
...|.++++...+.| +......+..+ +....+.+.|+.+|....+ .+ ......-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 467888888888866 33333333222 4456789999999999877 44 333555666677664
Q ss_pred C-----cHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc-cCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH----hh
Q 037620 94 K-----RYDEAVELFREMEATNCKPSPHIFCTLINGLGS-EKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYC----WS 163 (330)
Q Consensus 94 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 163 (330)
. +.+.|..++.+..+.| .|+...+-..+..... ..+...|.++|....+.|.. ..+-.+..+|. -.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 3 6678999999998888 5665554444433333 35678999999999998843 22222333332 23
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 164 MRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
.+...|..++.+.-..|. |....-...+..+.. +.++.+...+..+..
T Consensus 378 r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAE 425 (552)
T ss_pred CCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHH
Confidence 477889999998888873 332222223333333 666666666655544
No 316
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.44 E-value=10 Score=34.15 Aligned_cols=184 Identities=10% Similarity=0.026 Sum_probs=106.8
Q ss_pred HHHHHHHHHh-hCCCCCCh--HHHHHHHHHHh-hccChHHHHHHHHHHHhCCCCCChH-----HHHHHHHHHhccCcHHH
Q 037620 28 RAQEVFDKMK-KRRFDPDI--KSYTILLEGWG-QQKNLLSMNEVYREMKDDGFEPDVV-----SYGIMINAHCSAKRYDE 98 (330)
Q Consensus 28 ~a~~~~~~~~-~~~~~~~~--~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~ll~~~~~~~~~~~ 98 (330)
.|+..++.+. +..++|.. .++-.+...+. ...+++.|+..+++.....-.++.. +-..++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 4566677666 34445543 34445555555 6789999999999886553232222 1234556666666555
Q ss_pred HHHHHHHHHhcC----CCCChHHHHHH-HHHHhccCcHHHHHHHHHHHHhcC---CCCChhhHHHHHHHHH--hhCChhH
Q 037620 99 AVELFREMEATN----CKPSPHIFCTL-INGLGSEKRLSEALQFFGQSKKRG---FEPEAPTYNAVVGAYC--WSMRIND 168 (330)
Q Consensus 99 a~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~~ 168 (330)
|...+++.++.- ..+-...|..+ +..+...+++..|.+.++.+.... ..|...++-.++.+.. +.+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 888888866532 22333444444 333334489999999998876542 2333444444444443 4455677
Q ss_pred HHHHHHHHHHcCC---------CCcHHHHHHHHHHHH--HcCCHHHHHHHHHHhh
Q 037620 169 AYRMMDEMRKCGI---------GPNTRTYDIVLHHLI--KAGRTEEAYSVFKRMS 212 (330)
Q Consensus 169 a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~ 212 (330)
+.+.++.+..... .|...+|..+++.++ ..|+++.+...++.+.
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777776643211 234566666666554 5677667666655543
No 317
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.36 E-value=4.4 Score=30.05 Aligned_cols=88 Identities=10% Similarity=0.104 Sum_probs=48.0
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCC-----hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhC
Q 037620 90 HCSAKRYDEAVELFREMEATNCKPS-----PHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSM 164 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (330)
+...|++++|..-|...+..- |+. ...|..-..++.+.+.++.|+.-..+.++.+ +........-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhh
Confidence 345566666666666665543 222 2334444455666666666666666666654 112222223344566666
Q ss_pred ChhHHHHHHHHHHHc
Q 037620 165 RINDAYRMMDEMRKC 179 (330)
Q Consensus 165 ~~~~a~~~~~~~~~~ 179 (330)
.++.|+.-|..+...
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 666666666666654
No 318
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.14 E-value=4.8 Score=29.68 Aligned_cols=93 Identities=12% Similarity=0.095 Sum_probs=58.0
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccC
Q 037620 192 LHHLIKAGRTEEAYSVFKRMSRKPGT-EPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHED 270 (330)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 270 (330)
...+...|++++|...++........ .....+-..|.+.....|.++.|+..++...+.+..+ .....-.+.+...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHcC
Confidence 45567778888888888776541110 0011112234556677788888888888776654432 22334456777888
Q ss_pred ChhHHHHHHHHHHhcC
Q 037620 271 KLDDACKYFQEMLDIG 286 (330)
Q Consensus 271 ~~~~a~~~~~~~~~~~ 286 (330)
+-++|..-|++.++.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 8888888888887764
No 319
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.13 E-value=8.8 Score=32.70 Aligned_cols=125 Identities=7% Similarity=0.092 Sum_probs=80.1
Q ss_pred HHHHHccCChHHHHH-HHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCc
Q 037620 17 IDTLCKSRHVERAQE-VFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKR 95 (330)
Q Consensus 17 i~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 95 (330)
|.--...|++-.|-+ ++..+......|+.....+ ......|+++.+...+...... +.....+...+++...+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 344445677666544 4444444333344333333 3355678888888888776544 34456677788888888899
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcC
Q 037620 96 YDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRG 145 (330)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (330)
++.|..+-.-|....+ .++.............|-++++.-.++++...+
T Consensus 373 ~~~a~s~a~~~l~~ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 373 WREALSTAEMMLSNEI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHHhcccc-CChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9999998888877653 344444444445556677888888888887664
No 320
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.12 E-value=0.35 Score=25.74 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=11.1
Q ss_pred HHHHHHhcCchHHHHHHHHHHHh
Q 037620 297 LKQALRDEGMEETAVVLAQKIDK 319 (330)
Q Consensus 297 l~~~~~~~g~~~~a~~~~~~~~~ 319 (330)
+.++|...|+.+.|..+++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34444455555555555544443
No 321
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.05 E-value=13 Score=34.63 Aligned_cols=38 Identities=5% Similarity=-0.023 Sum_probs=20.9
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 037620 124 GLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYC 161 (330)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (330)
.|......+.+..+++.+....-.++....+.++..|+
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 34455556666666666655544445555555555554
No 322
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.90 E-value=12 Score=33.80 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=38.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccC-------hHHHHHHHHHHHhC
Q 037620 15 RLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN-------LLSMNEVYREMKDD 74 (330)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~ 74 (330)
.+|-.|.++|++++|.++...... ........+...+..|....+ -++...-|++..+.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 466788899999999999966555 344556677778888776532 23555556665554
No 323
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.65 E-value=10 Score=32.64 Aligned_cols=181 Identities=9% Similarity=0.131 Sum_probs=127.3
Q ss_pred CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHH
Q 037620 112 KPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIV 191 (330)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (330)
+.|.....+++..+..+-.+.-+..+..++...| -+-..+..++++|... ..+....+++++.+..+. |...-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 5677778889999999999999999999999886 4677888999999888 678888999998886543 33333444
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCCCCc------hHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-CCCccHHHHHHHHH
Q 037620 192 LHHLIKAGRTEEAYSVFKRMSRKPGTEPT------VSTYEIVVRMFCYNAQVDMAMRIWDEMKAR-GVLPVMHMYSTLIN 264 (330)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~ 264 (330)
...| ..++...+..+|.++.. .+.|. ...|..+... -..+.+....+..++... |...-...+..+-.
T Consensus 139 a~~y-Ekik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~ 213 (711)
T COG1747 139 ADKY-EKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYK 213 (711)
T ss_pred HHHH-HHhchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 4444 44888888888888765 22221 1245555432 245677777777777643 44444456666778
Q ss_pred HHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 037620 265 SLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALR 302 (330)
Q Consensus 265 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 302 (330)
-|....++++|++++..+++.+ ..|...-..++..++
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lR 250 (711)
T COG1747 214 KYSENENWTEAIRILKHILEHD-EKDVWARKEIIENLR 250 (711)
T ss_pred HhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHH
Confidence 8889999999999999888765 345555555555544
No 324
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.38 E-value=10 Score=32.29 Aligned_cols=96 Identities=11% Similarity=0.025 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 037620 116 HIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHL 195 (330)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (330)
.........+...|+++.+.+.+...... +.....+...+++...+.|+++.|..+-+-|....+. ++.......-..
T Consensus 324 ~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa 401 (831)
T PRK15180 324 VLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSA 401 (831)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccH
Confidence 33333344556677777777777665443 2334556667777777777888877777777665544 444444333344
Q ss_pred HHcCCHHHHHHHHHHhhc
Q 037620 196 IKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~ 213 (330)
...|-++++...|+++..
T Consensus 402 ~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 402 DALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHhHHHHHHHHHHHHhc
Confidence 455667777777777654
No 325
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.32 E-value=7.3 Score=30.41 Aligned_cols=201 Identities=11% Similarity=0.045 Sum_probs=119.5
Q ss_pred CCCCChhhHHHHHHH-HHccCChHHHHHHHHHHhhCCCCCChH---HHHHHHHHHhhccChHHHHHHHHHHHhC---CC-
Q 037620 5 GLKQELPDFNRLIDT-LCKSRHVERAQEVFDKMKKRRFDPDIK---SYTILLEGWGQQKNLLSMNEVYREMKDD---GF- 76 (330)
Q Consensus 5 g~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~- 76 (330)
+-.||+..=|..-.+ -.+...+++|+.-|....+.......+ +...++....+.+++++....+.++..- .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 455666554332211 134458899999999988753233333 4455688889999999999988888642 11
Q ss_pred -CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc-----CCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCC--
Q 037620 77 -EPDVVSYGIMINAHCSAKRYDEAVELFREMEAT-----NCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEP-- 148 (330)
Q Consensus 77 -~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-- 148 (330)
.-+..+.++++.......+.+.....|+.-.+. +-..--.|-..|...|...+++.+..+++.++..+.-..
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 224556677777666666655555555443221 101111223457778888888888888888876542111
Q ss_pred ---------ChhhHHHHHHHHHhhCChhHHHHHHHHHHHcC-CCCcHHHHHHHHHH-----HHHcCCHHHHHH
Q 037620 149 ---------EAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG-IGPNTRTYDIVLHH-----LIKAGRTEEAYS 206 (330)
Q Consensus 149 ---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~-----~~~~~~~~~a~~ 206 (330)
=...|..-+++|....+-.....++++..... --|.+.... +|+- +.+.|++++|..
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHh
Confidence 12456666778887777777777787765422 223443332 3332 345677776643
No 326
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.31 E-value=15 Score=33.96 Aligned_cols=227 Identities=15% Similarity=0.072 Sum_probs=119.5
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCCh-------HHHHHHH-HHHhccCcHHHHHHHHHHHHhc----CCCCChhhHHHHH
Q 037620 90 HCSAKRYDEAVELFREMEATNCKPSP-------HIFCTLI-NGLGSEKRLSEALQFFGQSKKR----GFEPEAPTYNAVV 157 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 157 (330)
.....++.+|..+..++...-..|+. ..++.+- ......|+++.|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567888998888887654212221 1223322 2334578889998888776553 2234455666777
Q ss_pred HHHHhhCChhHHHHHHHHHHHcCCCCcHHH---HHHH--HHHHHHcCCHH--HHHHHHHHhhc-----CCCCCCchHHHH
Q 037620 158 GAYCWSMRINDAYRMMDEMRKCGIGPNTRT---YDIV--LHHLIKAGRTE--EAYSVFKRMSR-----KPGTEPTVSTYE 225 (330)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l--~~~~~~~~~~~--~a~~~~~~~~~-----~~~~~~~~~~~~ 225 (330)
.+..-.|++++|..+.....+..-.-+... |..+ ...+...|+.. +....+..... ++...+-..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 777888999999988877665322223322 2222 22344556332 22233332222 111112233445
Q ss_pred HHHHHHHhC-CCHHHHHHHHHHHHhCCCCccHHH--HHHHHHHHhccCChhHHHHHHHHHHhcCCCC----ChhhHHHHH
Q 037620 226 IVVRMFCYN-AQVDMAMRIWDEMKARGVLPVMHM--YSTLINSLCHEDKLDDACKYFQEMLDIGIRP----PGQLFSNLK 298 (330)
Q Consensus 226 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~ 298 (330)
.+..++.+. +...++..-+.-.......|-... +..|++.....|+.++|...+.++......+ +..+-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 555555441 122222222222222222222222 2356778888999999999999887543222 222222333
Q ss_pred HH--HHhcCchHHHHHHHHH
Q 037620 299 QA--LRDEGMEETAVVLAQK 316 (330)
Q Consensus 299 ~~--~~~~g~~~~a~~~~~~ 316 (330)
.. ....|+.+.+...+.+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 32 3457888887776665
No 327
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.06 E-value=6.1 Score=29.15 Aligned_cols=97 Identities=13% Similarity=0.023 Sum_probs=70.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCccH--HHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 037620 226 IVVRMFCYNAQVDMAMRIWDEMKARGVLPVM--HMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRD 303 (330)
Q Consensus 226 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 303 (330)
.+...+...+++++|...++.........+. ..--.|.+.....|.+++|+.+++...+.+. .......-.+.+..
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 3456788999999999999987754222111 1223456677889999999999988775432 34444556678999
Q ss_pred cCchHHHHHHHHHHHhcCCCC
Q 037620 304 EGMEETAVVLAQKIDKLRKTP 324 (330)
Q Consensus 304 ~g~~~~a~~~~~~~~~~~~~~ 324 (330)
.|+-++|..-+++......+|
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 172 KGDKQEARAAYEKALESDASP 192 (207)
T ss_pred cCchHHHHHHHHHHHHccCCh
Confidence 999999999999998876443
No 328
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.06 E-value=0.9 Score=21.89 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=11.9
Q ss_pred HHHHHHhcCchHHHHHHHHHHHh
Q 037620 297 LKQALRDEGMEETAVVLAQKIDK 319 (330)
Q Consensus 297 l~~~~~~~g~~~~a~~~~~~~~~ 319 (330)
+..++.+.|++++|.+.++++.+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 44445555555555555555544
No 329
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.85 E-value=2.9 Score=33.67 Aligned_cols=47 Identities=11% Similarity=-0.120 Sum_probs=21.0
Q ss_pred HHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 037620 160 YCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSV 207 (330)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 207 (330)
|.+.|.+++|+.+|...+... +-+..++..-..+|.+...+..|..-
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~D 153 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEED 153 (536)
T ss_pred hhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHh
Confidence 444555555555554444321 11444444444445444444444433
No 330
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.72 E-value=13 Score=32.51 Aligned_cols=33 Identities=9% Similarity=-0.024 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh
Q 037620 199 GRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCY 233 (330)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (330)
++.+.|..++..+.+ ..+++...|..++.....
T Consensus 455 ~d~~~a~~~l~~~~~--~~~~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 455 EDADLARIILLEAND--ILPDCKVLYLELIRFELI 487 (577)
T ss_pred cCHHHHHHHHHHhhh--cCCccHHHHHHHHHHHHh
Confidence 445555555555543 344444444444444333
No 331
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.49 E-value=7.4 Score=34.13 Aligned_cols=153 Identities=19% Similarity=0.120 Sum_probs=104.2
Q ss_pred HHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHH
Q 037620 20 LCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEA 99 (330)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 99 (330)
+.-.|+++.|..++..+.+ ...+.+.+.+.+.|-.++|+++ .+|..-- .....+.|+++.|
T Consensus 596 ~vmrrd~~~a~~vLp~I~k-------~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA 656 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIPK-------EIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIA 656 (794)
T ss_pred HhhhccccccccccccCch-------hhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHH
Confidence 3456888888776655442 2345556666677777766653 2232221 2334567899999
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHc
Q 037620 100 VELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179 (330)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (330)
.++..+.. +..-|..|.++....+++..|.+.|..... |..|+-.+...|+.+....+-....+.
T Consensus 657 ~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 657 FDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred HHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 88876543 455788999999999999999999887654 445777788888888777777777776
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 037620 180 GIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMS 212 (330)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (330)
|.. + ....+|...|+++++.+++..-.
T Consensus 722 g~~-N-----~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 722 GKN-N-----LAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred ccc-c-----hHHHHHHHcCCHHHHHHHHHhcC
Confidence 632 2 23345667899999999888653
No 332
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.31 E-value=1.9 Score=26.35 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=28.4
Q ss_pred ccCChhHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCchHHHHHHH
Q 037620 268 HEDKLDDACKYFQEMLDIGIRPP--GQLFSNLKQALRDEGMEETAVVLA 314 (330)
Q Consensus 268 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~ 314 (330)
...+.++|+..|+..++.-..+. ..++..++.+|...|++++++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566777777777765432222 235556667777777777766554
No 333
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.25 E-value=0.7 Score=21.19 Aligned_cols=20 Identities=30% Similarity=0.317 Sum_probs=11.1
Q ss_pred HHHHHHHhcCchHHHHHHHH
Q 037620 296 NLKQALRDEGMEETAVVLAQ 315 (330)
Q Consensus 296 ~l~~~~~~~g~~~~a~~~~~ 315 (330)
.+..++...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 44555555666666655543
No 334
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=89.14 E-value=9 Score=30.11 Aligned_cols=88 Identities=16% Similarity=0.138 Sum_probs=51.7
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---
Q 037620 86 MINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCW--- 162 (330)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 162 (330)
=|.+++..++|.+++.+.-+.-+.--+..+.+...-|-.|.+.+++..+.++-....+..-.-+...|..++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 35677777888777776655443211222334444455677788877777777666554222233346666555543
Q ss_pred --hCChhHHHHHH
Q 037620 163 --SMRINDAYRMM 173 (330)
Q Consensus 163 --~~~~~~a~~~~ 173 (330)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 57777777665
No 335
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=89.08 E-value=2 Score=28.92 Aligned_cols=59 Identities=7% Similarity=0.126 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 037620 239 MAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLK 298 (330)
Q Consensus 239 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 298 (330)
+..+-+..+...++.|++.....-+++|.+.+|+..|.++|+-...+ ..+....|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 56666677777788899999999999999999999999999887653 233333454443
No 336
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.87 E-value=4.5 Score=30.47 Aligned_cols=77 Identities=10% Similarity=0.177 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC--CCccHHHHHHHHH
Q 037620 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG--VLPVMHMYSTLIN 264 (330)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~ 264 (330)
|....++.+.+.+...+++...+.-.+. .+.+...-..+++.++-.|++++|..-++..-... ..+-...|..+|+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 4455677788889999999988876652 33344555678899999999999998888766542 2334566777766
Q ss_pred H
Q 037620 265 S 265 (330)
Q Consensus 265 ~ 265 (330)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 4
No 337
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.81 E-value=1.7 Score=23.19 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=10.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHH
Q 037620 227 VVRMFCYNAQVDMAMRIWDEMK 248 (330)
Q Consensus 227 l~~~~~~~~~~~~a~~~~~~~~ 248 (330)
+..+|...|+.+.|..+++++.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 3344444444444444444444
No 338
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.69 E-value=1 Score=21.99 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHh
Q 037620 294 FSNLKQALRDEGMEETAVVLAQKIDK 319 (330)
Q Consensus 294 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (330)
|..+...|...|++++|...+++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444555555555555555555443
No 339
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.59 E-value=0.96 Score=21.80 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=7.0
Q ss_pred HhccCcHHHHHHHHHHHH
Q 037620 90 HCSAKRYDEAVELFREME 107 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~ 107 (330)
+.+.|++++|.+.|+++.
T Consensus 10 ~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 10 YYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHH
Confidence 333333444444433333
No 340
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.51 E-value=1.5 Score=21.37 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=20.0
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 258 MYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 258 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466677777778888888888877765
No 341
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.47 E-value=13 Score=30.90 Aligned_cols=180 Identities=14% Similarity=0.089 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcC---------CCCC
Q 037620 81 VSYGIMINAHCSAKRYDEAVELFREMEATN--CKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRG---------FEPE 149 (330)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~ 149 (330)
..+.-+...|...|+++.|++.|.+...-- .+-....|..+|..-.-.|+|.....+..+..+.- +++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 456677888889999999999998865431 13345566777778888899888888877776541 2223
Q ss_pred hhhHHHHHHHHHhhCChhHHHHHHHHHHHc-C-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHH
Q 037620 150 APTYNAVVGAYCWSMRINDAYRMMDEMRKC-G-----IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVST 223 (330)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 223 (330)
...+..+..... +++..|...|-..... . +.|...+....+.+++.-++-+--..+.....-+.-....+..
T Consensus 231 l~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pql 308 (466)
T KOG0686|consen 231 LKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQL 308 (466)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHH
Confidence 333333433333 3555555544332211 1 2233333334444444333333222222211110111123333
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhC-----CCCccHHHHHHHHH
Q 037620 224 YEIVVRMFCYNAQVDMAMRIWDEMKAR-----GVLPVMHMYSTLIN 264 (330)
Q Consensus 224 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~ 264 (330)
...+..- ..+++..+++++++++.. -+.|...+...+|+
T Consensus 309 r~il~~f--y~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 309 REILFKF--YSSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred HHHHHHH--hhhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 3344332 345788888888887653 23455555444443
No 342
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.45 E-value=1.7 Score=34.90 Aligned_cols=94 Identities=16% Similarity=0.100 Sum_probs=66.1
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCC
Q 037620 193 HHLIKAGRTEEAYSVFKRMSRKPGTEP-TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDK 271 (330)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 271 (330)
.-|.+.|.+++|++.|..... ..| +.+++..-..+|.+...+..|+.=....+..+-. -...|..-+.+-...|.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhh
Confidence 468899999999999998765 334 7788888889999999999888877776655322 23345544444455666
Q ss_pred hhHHHHHHHHHHhcCCCCChh
Q 037620 272 LDDACKYFQEMLDIGIRPPGQ 292 (330)
Q Consensus 272 ~~~a~~~~~~~~~~~~~~~~~ 292 (330)
..+|.+=++..+.. .|+..
T Consensus 181 ~~EAKkD~E~vL~L--EP~~~ 199 (536)
T KOG4648|consen 181 NMEAKKDCETVLAL--EPKNI 199 (536)
T ss_pred HHHHHHhHHHHHhh--CcccH
Confidence 66776666666643 56543
No 343
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.45 E-value=8 Score=27.17 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=9.1
Q ss_pred HHcCCHHHHHHHHHHhhc
Q 037620 196 IKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~ 213 (330)
...|++.+|..+|+.+.+
T Consensus 55 i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 55 IARGNYDEAARILRELLS 72 (153)
T ss_pred HHcCCHHHHHHHHHhhhc
Confidence 344555555555555443
No 344
>PRK11619 lytic murein transglycosylase; Provisional
Probab=87.29 E-value=23 Score=32.24 Aligned_cols=118 Identities=10% Similarity=0.063 Sum_probs=66.2
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCch--HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHH
Q 037620 198 AGRTEEAYSVFKRMSRKPGTEPTV--STYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDA 275 (330)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 275 (330)
..+.+.|...+..........+.. .++..+.......+..+++...++...... .+......-++.....++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 345566777777654423332222 122333333333322445555555433221 2334455555666688899888
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 037620 276 CKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKID 318 (330)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (330)
...+..|-... .-...-.--+.+++...|+.++|..+++++.
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888875432 2233333446777777899999999988874
No 345
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.27 E-value=8.2 Score=27.12 Aligned_cols=17 Identities=12% Similarity=0.141 Sum_probs=7.4
Q ss_pred ccCcHHHHHHHHHHHHh
Q 037620 127 SEKRLSEALQFFGQSKK 143 (330)
Q Consensus 127 ~~~~~~~a~~~~~~~~~ 143 (330)
..|++.+|.++++.+.+
T Consensus 56 ~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 56 ARGNYDEAARILRELLS 72 (153)
T ss_pred HcCCHHHHHHHHHhhhc
Confidence 34444444444444443
No 346
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=87.19 E-value=9.6 Score=27.80 Aligned_cols=61 Identities=18% Similarity=0.274 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHhccC-----------cHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 037620 97 DEAVELFREMEATNCKPSPHIFCTLINGLGSEK-----------RLSEALQFFGQSKKRGFEPEAPTYNAVVGAY 160 (330)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (330)
++|+.-|++.+..+ |....++..+..+|...+ .+++|.+.|++.... .|+..+|+.-+...
T Consensus 52 edAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 52 EDAISKFEEALKIN-PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 33444444444443 333445555555544332 144455555555544 46666666555544
No 347
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.08 E-value=13 Score=28.41 Aligned_cols=18 Identities=17% Similarity=0.377 Sum_probs=10.8
Q ss_pred HhhccChHHHHHHHHHHH
Q 037620 55 WGQQKNLLSMNEVYREMK 72 (330)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~ 72 (330)
+.-.+.+++|.++|.+..
T Consensus 24 fgg~~k~eeAadl~~~Aa 41 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAA 41 (288)
T ss_pred cCCCcchHHHHHHHHHHH
Confidence 344456777777776543
No 348
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.04 E-value=20 Score=31.73 Aligned_cols=132 Identities=11% Similarity=0.079 Sum_probs=83.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 037620 117 IFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLI 196 (330)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (330)
.-+.++..+.+.|-.++|+++ .+|.... .....+.|+++.|.++..+. .+..-|..|..+..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHh
Confidence 344555666666666666544 2333222 22345677777777665443 26778888888888
Q ss_pred HcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHH
Q 037620 197 KAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDAC 276 (330)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 276 (330)
..+++..|.+.|.+... |..|+-.+...|+.+....+-....+.|.. |...-+|...|+++++.
T Consensus 678 ~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECL 741 (794)
T ss_pred hcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHH
Confidence 88888888888887643 445666677777777666666665555433 23334566788888888
Q ss_pred HHHHHH
Q 037620 277 KYFQEM 282 (330)
Q Consensus 277 ~~~~~~ 282 (330)
+++..-
T Consensus 742 ~lLi~t 747 (794)
T KOG0276|consen 742 ELLIST 747 (794)
T ss_pred HHHHhc
Confidence 877654
No 349
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=85.46 E-value=18 Score=29.25 Aligned_cols=25 Identities=8% Similarity=0.142 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHH
Q 037620 223 TYEIVVRMFCYNAQVDMAMRIWDEM 247 (330)
Q Consensus 223 ~~~~l~~~~~~~~~~~~a~~~~~~~ 247 (330)
.+......|++.|+.+.|.+.+++.
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4445555666666666666665543
No 350
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=85.43 E-value=16 Score=28.78 Aligned_cols=128 Identities=10% Similarity=-0.015 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHhhCC-----C-CCCh-------HHHHHHHHHHhhccChHHHHHHHHHHHhCCCC
Q 037620 11 PDFNRLIDTLCKSRHVERAQEVFDKMKKRR-----F-DPDI-------KSYTILLEGWGQQKNLLSMNEVYREMKDDGFE 77 (330)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 77 (330)
.....-.+.+.-..||..|++..++-.+.= . .++. .....-|.+++..|+|.+++.+.-+--..--+
T Consensus 36 ~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEk 115 (309)
T PF07163_consen 36 SLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEK 115 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCccc
Confidence 344555555666789999998888765520 1 1111 11223478999999999998877665543222
Q ss_pred CChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHH-----hccCcHHHHHHHH
Q 037620 78 PDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGL-----GSEKRLSEALQFF 138 (330)
Q Consensus 78 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~ 138 (330)
........-|-.|.+.+++..+.++-..-....-.-...-|..++..| .=.|.+++|+++.
T Consensus 116 lPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 116 LPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 334455556667999999999888887766532122333466666555 5579999999887
No 351
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.01 E-value=18 Score=28.82 Aligned_cols=55 Identities=7% Similarity=0.019 Sum_probs=26.6
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHH
Q 037620 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEM 176 (330)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (330)
....|..+|.+.+|.++.++..... +.+...+..++..+...|+--.+.+-++.+
T Consensus 285 va~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3444555555555555555554443 334444455555555555544444444443
No 352
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.75 E-value=56 Score=34.34 Aligned_cols=62 Identities=15% Similarity=0.048 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhc
Q 037620 221 VSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDI 285 (330)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 285 (330)
..+|....+...++|+++.|...+-...+.+ . +..+-..++-..+.|+...|+.++++.++.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4567888888888999999988877776665 2 245666777888899999999999988854
No 353
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=84.73 E-value=16 Score=28.08 Aligned_cols=37 Identities=24% Similarity=0.446 Sum_probs=21.5
Q ss_pred CCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCc
Q 037620 147 EPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184 (330)
Q Consensus 147 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 184 (330)
.|.+.....++..|. .+++++|.+++.++.+.|..|.
T Consensus 236 ~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHH
Confidence 355555555555443 4556666777766666666543
No 354
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.43 E-value=23 Score=29.63 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=11.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHH
Q 037620 13 FNRLIDTLCKSRHVERAQEVFDK 35 (330)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~ 35 (330)
+.-+.+.|..+|+++.|++.|.+
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR 175 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSR 175 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhh
Confidence 34444445555555555555544
No 355
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=84.19 E-value=3.6 Score=25.17 Aligned_cols=45 Identities=7% Similarity=0.063 Sum_probs=17.7
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCch-HHHHHHHHHHHhCCCHHHHHH
Q 037620 198 AGRTEEAYSVFKRMSRKPGTEPTV-STYEIVVRMFCYNAQVDMAMR 242 (330)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~ 242 (330)
..+.++|+..|....++....++. .++..++.+|+..|++.++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444322222221 133344444444444444433
No 356
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.14 E-value=30 Score=30.85 Aligned_cols=180 Identities=13% Similarity=0.225 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHH--HH-HhccCcHHHHHHHHHHHHh-------cCCCCChhhHHHHHHHHHhhC-
Q 037620 96 YDEAVELFREMEATNCKPSPHIFCTLI--NG-LGSEKRLSEALQFFGQSKK-------RGFEPEAPTYNAVVGAYCWSM- 164 (330)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~- 164 (330)
...+.++++...+.| ..........+ .+ +....+.+.|+.+++.+.+ .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g-~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG-HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhc-chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 356777777776665 22222221111 22 3456677778877777765 43 2334555666666543
Q ss_pred ----ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHH----hCC
Q 037620 165 ----RINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIK-AGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFC----YNA 235 (330)
Q Consensus 165 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~ 235 (330)
+...|..++...-..|. |+...+...+..... ..+...|..+|....+ .|..+ .+..+..+|. ...
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~-~G~~~---A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAK-AGHIL---AIYRLALCYELGLGVER 378 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHH-cCChH---HHHHHHHHHHhCCCcCC
Confidence 45567777777766653 233332222222222 2346677777777765 23221 1122222221 223
Q ss_pred CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 037620 236 QVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 286 (330)
+...|..++.+..+.|........ ..+..+.. ++++.+.-.+..+.+.|
T Consensus 379 ~~~~A~~~~k~aA~~g~~~A~~~~-~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKGNPSAAYLL-GAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CHHHHHHHHHHHHHccChhhHHHH-HHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 666777777777777622212211 12222222 55555555555554444
No 357
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=83.58 E-value=2.9 Score=19.23 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=11.9
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHH
Q 037620 259 YSTLINSLCHEDKLDDACKYFQEML 283 (330)
Q Consensus 259 ~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (330)
|..+...+...++++.|...+++.+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444444555555555554443
No 358
>PRK09687 putative lyase; Provisional
Probab=83.09 E-value=22 Score=28.40 Aligned_cols=235 Identities=9% Similarity=0.029 Sum_probs=141.1
Q ss_pred CChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcH----HHHHHHHHHHHhcCCCCChHHH
Q 037620 43 PDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRY----DEAVELFREMEATNCKPSPHIF 118 (330)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 118 (330)
+|.......+.++...|.. .+...+..+... +|...-...+.++...|+. .++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 4666777777777777753 444444445443 3555555566667777753 4677777766443 3556666
Q ss_pred HHHHHHHhccCcH-----HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 037620 119 CTLINGLGSEKRL-----SEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLH 193 (330)
Q Consensus 119 ~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 193 (330)
...+.++...+.. ..+...+..... .++..+-...+.++.+.++ +.+...+-.+... ++...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 5666666554421 233333333332 3466666677778877776 4555665555553 35555555566
Q ss_pred HHHHcC-CHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCCh
Q 037620 194 HLIKAG-RTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKL 272 (330)
Q Consensus 194 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 272 (330)
++...+ +...+...+..+..+ ++..+-...+.++.+.++. .+...+-...+.+. .....+.++...|+.
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~D----~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQD----KNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGDK 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhcC----CChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH
Confidence 666543 244666666666642 3555566778888888885 45555555454432 234677788888884
Q ss_pred hHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 037620 273 DDACKYFQEMLDIGIRPPGQLFSNLKQALRD 303 (330)
Q Consensus 273 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 303 (330)
+|+..+..+.+. .||..+-...+.++.+
T Consensus 252 -~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 252 -TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred -hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 789999888864 3577777666666543
No 359
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.00 E-value=10 Score=24.54 Aligned_cols=84 Identities=12% Similarity=0.130 Sum_probs=44.1
Q ss_pred ChHHHHHHHHHHhhCCCCCChHHHHHH--HHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHH
Q 037620 25 HVERAQEVFDKMKKRRFDPDIKSYTIL--LEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVEL 102 (330)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 102 (330)
..++|..+-+.+...+ +..-...| +..+...|++++|..+.+.+ ..||...|.+|- -.+.|..+.+...
T Consensus 20 cHqEA~tIAdwL~~~~---~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~r 90 (115)
T TIGR02508 20 CHQEANTIADWLHLKG---ESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESR 90 (115)
T ss_pred HHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHH
Confidence 4556666666655532 11112222 33456667777776666554 256666665543 3355555555555
Q ss_pred HHHHHhcCCCCChHHH
Q 037620 103 FREMEATNCKPSPHIF 118 (330)
Q Consensus 103 ~~~~~~~~~~~~~~~~ 118 (330)
+..+..+| .|....|
T Consensus 91 l~rla~sg-~p~lq~F 105 (115)
T TIGR02508 91 LNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHhCC-CHHHHHH
Confidence 55665555 4444444
No 360
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=82.68 E-value=31 Score=29.81 Aligned_cols=241 Identities=12% Similarity=0.093 Sum_probs=126.4
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHhccC------cHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHhccCcHHHHH
Q 037620 64 MNEVYREMKDDGFEPDVVSYGIMINAHCSAK------RYDEAVELFREMEATN--CKPSPHIFCTLINGLGSEKRLSEAL 135 (330)
Q Consensus 64 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~ 135 (330)
...+|+..... -|+...|+..|..|...- .......+++...+.+ .+.....|..+.-.+.......++
T Consensus 301 ~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~- 377 (568)
T KOG2396|consen 301 CCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV- 377 (568)
T ss_pred HHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH-
Confidence 34555555543 456666666666655432 2333444555544332 123345555555555555443322
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhh-CChhHH-HHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC-HHHH--HHHHHH
Q 037620 136 QFFGQSKKRGFEPEAPTYNAVVGAYCWS-MRINDA-YRMMDEMRKCGIGPNTRTYDIVLHHLIKAGR-TEEA--YSVFKR 210 (330)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a--~~~~~~ 210 (330)
-..+...++..+...|..-+...... .+++-. ...+......-..+....|++.. .++ ++.. ..++..
T Consensus 378 --a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a 450 (568)
T KOG2396|consen 378 --AVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISA 450 (568)
T ss_pred --HHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHH
Confidence 22222222344555555555444422 122221 12223333321222223333332 111 1111 112222
Q ss_pred hhcCCCCCCchHHH-HHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHH--hccCChhHHHHHHHHHHh-cC
Q 037620 211 MSRKPGTEPTVSTY-EIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSL--CHEDKLDDACKYFQEMLD-IG 286 (330)
Q Consensus 211 ~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~-~~ 286 (330)
+.. -..|+..++ +.++..+...|-..+|..++..+... ++|+...|..+|+.= ...-+..-+..+++.|.. .|
T Consensus 451 ~~s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg 527 (568)
T KOG2396|consen 451 LLS--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG 527 (568)
T ss_pred HHH--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC
Confidence 222 222444333 56677778889999999999998876 455777777777632 223337778888888875 45
Q ss_pred CCCChhhHHHHHHHHHhcCchHHHHHHHHHHHh
Q 037620 287 IRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 319 (330)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (330)
.++..|...+..=...|..+.+-.++.+..+
T Consensus 528 --~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 528 --ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred --CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 6788888777777788888888777766554
No 361
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=82.50 E-value=69 Score=33.74 Aligned_cols=298 Identities=10% Similarity=0.055 Sum_probs=148.6
Q ss_pred HHHHHHHccCChHHHHHHHHHHhhCCC--CCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhc
Q 037620 15 RLIDTLCKSRHVERAQEVFDKMKKRRF--DPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCS 92 (330)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (330)
.+..+-.+++.+.+|...++.-..... ......|..+...|...++++...-+...-. .+...+.. +.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~~q-il~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLYQQ-ILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHHHH-HHHHHh
Confidence 344455677888888888887311110 1122334444457888888888777765411 12233333 334556
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHH-HHHHHhhCChhHHHH
Q 037620 93 AKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAV-VGAYCWSMRINDAYR 171 (330)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~ 171 (330)
.|++..|...|+.+.+.+ ++...+++.++......|.++.+.-..+-..... .+....++.+ +.+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 788888899998888876 5556677777776666777666665444443321 2222222221 222233444444333
Q ss_pred HHH--------------HHHHcCCCCcHHHHHHHH-----------HHHHHcCCHHHHHHHHHHhh----------cCCC
Q 037620 172 MMD--------------EMRKCGIGPNTRTYDIVL-----------HHLIKAGRTEEAYSVFKRMS----------RKPG 216 (330)
Q Consensus 172 ~~~--------------~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~----------~~~~ 216 (330)
.+. .+... ..-|......++ .++...|.+..+.++.-++. ...+
T Consensus 1540 ~l~~~n~e~w~~~~~g~~ll~~-~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~ 1618 (2382)
T KOG0890|consen 1540 YLSDRNIEYWSVESIGKLLLRN-KKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKK 1618 (2382)
T ss_pred hhhcccccchhHHHHHHHHHhh-cccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 322 00000 000111110000 11111222222222211111 0011
Q ss_pred CCCc------hHHHHHHHHHHHhCCCHHHHHHHH-HHHHhCCCCc-----cHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 217 TEPT------VSTYEIVVRMFCYNAQVDMAMRIW-DEMKARGVLP-----VMHMYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 217 ~~~~------~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
..++ ..-|..-+..-....+..+-+--+ +.+......| ...+|-...+.....|.++.|...+-...+
T Consensus 1619 ~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e 1698 (2382)
T KOG0890|consen 1619 VSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKE 1698 (2382)
T ss_pred cCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhh
Confidence 1111 111222222111111111111111 1111111111 346788888888889999999988877766
Q ss_pred cCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCCC
Q 037620 285 IGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTP 324 (330)
Q Consensus 285 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 324 (330)
.+ -+..+...++.+...|+...|..++++......+.
T Consensus 1699 ~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1699 SR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred cc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 54 34455567788889999999999999988665544
No 362
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=82.45 E-value=12 Score=26.32 Aligned_cols=55 Identities=13% Similarity=0.091 Sum_probs=26.9
Q ss_pred CCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccC
Q 037620 215 PGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHED 270 (330)
Q Consensus 215 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 270 (330)
.|.+++..= ..++..+...++.-.|.++++++.+.++..+..|...-+..+...|
T Consensus 15 ~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 15 AGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred cCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344444322 2445555555555666666666666554444443333334444444
No 363
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=81.94 E-value=18 Score=26.50 Aligned_cols=95 Identities=17% Similarity=0.163 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhcc---Cc-------HHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhhC
Q 037620 96 YDEAVELFREMEATNCKPSPHIFCTLINGLGSE---KR-------LSEALQFFGQSKKRGFEPE-APTYNAVVGAYCWSM 164 (330)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~-------~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 164 (330)
++.|.+.++.-...+ |.|...++.-..++... .+ +++|..-|++.... .|+ ..++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHH
Confidence 344555555544444 55555555443333222 22 34455555555555 343 356666666665543
Q ss_pred ----C-------hhHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 037620 165 ----R-------INDAYRMMDEMRKCGIGPNTRTYDIVLHHL 195 (330)
Q Consensus 165 ----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (330)
+ +++|...|+.... ..|+...|..-+...
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 2 3445555555555 357777777777665
No 364
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=81.69 E-value=45 Score=31.08 Aligned_cols=199 Identities=12% Similarity=0.079 Sum_probs=106.8
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCChh-------hHHHHHH-HHHhhCChhHHHHHHHHHHHc----CCCCcHHHHHHHH
Q 037620 125 LGSEKRLSEALQFFGQSKKRGFEPEAP-------TYNAVVG-AYCWSMRINDAYRMMDEMRKC----GIGPNTRTYDIVL 192 (330)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 192 (330)
.....++.+|..++.++...-..|+.. .++.+-. .....|+++.|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678889998888876542222221 2333322 233568889998888776653 2233455667777
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCCCchHHH---HHH--HHHHHhCCCHH--HHHHHHHHHHhC--CCCc----cHHHH
Q 037620 193 HHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTY---EIV--VRMFCYNAQVD--MAMRIWDEMKAR--GVLP----VMHMY 259 (330)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~l--~~~~~~~~~~~--~a~~~~~~~~~~--~~~~----~~~~~ 259 (330)
.+..-.|++++|..+.....+. ...-+...+ ..+ ...+...|+.. +.+..+...... +-.| -..++
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 8888899999999888876651 112232222 222 23345666333 333333333221 1111 12334
Q ss_pred HHHHHHHhc-cCChhHHHHHHHHHHhcCCCCChhhH--HHHHHHHHhcCchHHHHHHHHHHHhcCCCC
Q 037620 260 STLINSLCH-EDKLDDACKYFQEMLDIGIRPPGQLF--SNLKQALRDEGMEETAVVLAQKIDKLRKTP 324 (330)
Q Consensus 260 ~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 324 (330)
..++.++.+ .+...++..-++-.......|-.... ..+++.....|+.++|...+.++......+
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 444555444 11222222222222222222222222 256778889999999999999988765544
No 365
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=81.58 E-value=25 Score=31.09 Aligned_cols=88 Identities=15% Similarity=0.005 Sum_probs=43.6
Q ss_pred hccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHH
Q 037620 91 CSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAY 170 (330)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (330)
.-.|+...|.+.+...........-.....|.+...+.|....|..++.+..... ...+-++-.+.+++.-..+.+.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3345555565555554332211111223334444455555555555555555443 334445555556666666666666
Q ss_pred HHHHHHHHc
Q 037620 171 RMMDEMRKC 179 (330)
Q Consensus 171 ~~~~~~~~~ 179 (330)
+.|+...+.
T Consensus 697 ~~~~~a~~~ 705 (886)
T KOG4507|consen 697 EAFRQALKL 705 (886)
T ss_pred HHHHHHHhc
Confidence 666655554
No 366
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=80.80 E-value=27 Score=27.98 Aligned_cols=18 Identities=17% Similarity=0.534 Sum_probs=11.4
Q ss_pred HHHHHHHHHhccCChhHH
Q 037620 258 MYSTLINSLCHEDKLDDA 275 (330)
Q Consensus 258 ~~~~l~~~~~~~~~~~~a 275 (330)
+|..|+.+++..|+.+..
T Consensus 323 ~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhhHHHHHHhcCChHHHH
Confidence 466677777777765543
No 367
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=80.35 E-value=25 Score=27.17 Aligned_cols=83 Identities=13% Similarity=0.101 Sum_probs=48.1
Q ss_pred HHhhCChhHHHHHHHHHHHcCCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchH-HHHHHHHHHHhCCCH
Q 037620 160 YCWSMRINDAYRMMDEMRKCGIGPNT-RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVS-TYEIVVRMFCYNAQV 237 (330)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~ 237 (330)
|....+++.|...+.+.+.. .|+. .-|+.-+..+.+..+++.+..--.+..+ +.|+.. ...-+.........+
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq---l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ---LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh---cChHHHHHHHHHHHHHHhhccc
Confidence 44555677777766666553 4554 3444556666667777776665555544 344433 223344455566677
Q ss_pred HHHHHHHHHH
Q 037620 238 DMAMRIWDEM 247 (330)
Q Consensus 238 ~~a~~~~~~~ 247 (330)
+.|+..+.+.
T Consensus 95 ~eaI~~Lqra 104 (284)
T KOG4642|consen 95 DEAIKVLQRA 104 (284)
T ss_pred cHHHHHHHHH
Confidence 7777777665
No 368
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=79.62 E-value=26 Score=27.03 Aligned_cols=81 Identities=19% Similarity=0.127 Sum_probs=35.8
Q ss_pred hccChHHHHHHHHHHHhCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHHhccCcHHHH
Q 037620 57 QQKNLLSMNEVYREMKDDGFEPDV-VSYGIMINAHCSAKRYDEAVELFREMEATNCKPSP-HIFCTLINGLGSEKRLSEA 134 (330)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a 134 (330)
....++.|+..|.+.+.. .|+. .-|..-+.++.+..+++.+..--...++. .|+. .....+..+......++.|
T Consensus 22 ~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred chhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHH
Confidence 334455555555444443 3343 23334444555555555554443333332 2222 2222333444445555555
Q ss_pred HHHHHHH
Q 037620 135 LQFFGQS 141 (330)
Q Consensus 135 ~~~~~~~ 141 (330)
+..+.+.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 5555544
No 369
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=79.60 E-value=9.3 Score=28.40 Aligned_cols=30 Identities=10% Similarity=0.130 Sum_probs=12.9
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 037620 219 PTVSTYEIVVRMFCYNAQVDMAMRIWDEMK 248 (330)
Q Consensus 219 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 248 (330)
|++.+|..++.++...|+.++|.++.+++.
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444444444444433
No 370
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=79.59 E-value=17 Score=24.77 Aligned_cols=61 Identities=8% Similarity=0.165 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 037620 63 SMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124 (330)
Q Consensus 63 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (330)
+..+-++.+...++.|++......+++|.+.+++..|.++|+-++..- .+....|..++.-
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~-g~~k~~Y~y~v~e 127 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC-GAQKQVYPYYVKE 127 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc-ccHHHHHHHHHHH
Confidence 455666777777778888888888888888888888888888776542 3444456555543
No 371
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=79.57 E-value=16 Score=27.21 Aligned_cols=52 Identities=10% Similarity=0.057 Sum_probs=30.3
Q ss_pred hCCCHHHHHHHHHHHHh-CCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 233 YNAQVDMAMRIWDEMKA-RGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 233 ~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
...+.+......+...+ ....|++.+|..++.++...|+.++|..+..++..
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444433333322 13356677777777777777777777777777664
No 372
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=79.42 E-value=33 Score=28.07 Aligned_cols=81 Identities=5% Similarity=-0.002 Sum_probs=41.8
Q ss_pred CCChHHHHHHHHHHhccC---c---------HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 77 EPDVVSYGIMINAHCSAK---R---------YDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 77 ~~~~~~~~~ll~~~~~~~---~---------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
+-|..+|-.++..--..- . .+.-+.++++.++.+ +.+......++..+.+..+.+...+-++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 346777766664322211 1 234455566655553 455555555666666666666666666666554
Q ss_pred CCCCChhhHHHHHHH
Q 037620 145 GFEPEAPTYNAVVGA 159 (330)
Q Consensus 145 ~~~~~~~~~~~l~~~ 159 (330)
. +-+...|...+..
T Consensus 95 ~-~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 95 N-PGSPELWREYLDF 108 (321)
T ss_pred C-CCChHHHHHHHHH
Confidence 2 2244445444443
No 373
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=78.58 E-value=2.4 Score=28.94 Aligned_cols=29 Identities=34% Similarity=0.382 Sum_probs=16.7
Q ss_pred cCChHHHHHHHHHHhhCCCCCChHHHHHHHH
Q 037620 23 SRHVERAQEVFDKMKKRRFDPDIKSYTILLE 53 (330)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 53 (330)
.|.-.+|..+|+.|+++|.+||. |+.|+.
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 34555666666666666666654 445544
No 374
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.31 E-value=33 Score=27.42 Aligned_cols=77 Identities=12% Similarity=-0.004 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc------cC-----cHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhC
Q 037620 96 YDEAVELFREMEATNCKPSPHIFCTLINGLGS------EK-----RLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSM 164 (330)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (330)
.+...+..++......+.....+...+.++.. .| -..+|+++|.-+.... -...+-..++.++....
T Consensus 103 ~ekLnraIdr~~k~ve~~~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~ 180 (361)
T COG3947 103 PEKLNRAIDRRLKRVELTAEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHK--GKEVTSWEAIEALWPEK 180 (361)
T ss_pred HHHHHHHHHHHhccccccchhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhc--CCcccHhHHHHHHcccc
Confidence 34444444444443334445555555555542 11 1356777777776652 22334445566666666
Q ss_pred ChhHHHHHHH
Q 037620 165 RINDAYRMMD 174 (330)
Q Consensus 165 ~~~~a~~~~~ 174 (330)
+...|...+.
T Consensus 181 D~kka~s~lh 190 (361)
T COG3947 181 DEKKASSLLH 190 (361)
T ss_pred chhhHHHHHH
Confidence 6655555443
No 375
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=77.72 E-value=5.4 Score=23.46 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=30.6
Q ss_pred ccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 037620 254 PVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 305 (330)
Q Consensus 254 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 305 (330)
|....++.++..++...-.++++..+.++.+.|. .+..+|..-++.+.+..
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaReQ 56 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAREQ 56 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHH
Confidence 4445566666666666666777777777776663 45666665555555543
No 376
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=77.55 E-value=17 Score=32.55 Aligned_cols=93 Identities=12% Similarity=0.004 Sum_probs=39.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 037620 117 IFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLI 196 (330)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (330)
.|..-+..+..+++.. ...++.+..+-...+...-.-++..|.+.|-.+.+.++.+.+-..-. ...-|..-+..+.
T Consensus 374 lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ 449 (566)
T PF07575_consen 374 LWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFI 449 (566)
T ss_dssp THHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHH
Confidence 3444444443333222 44444444443334555566777778888888878777776654322 2345666677777
Q ss_pred HcCCHHHHHHHHHHhhc
Q 037620 197 KAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 197 ~~~~~~~a~~~~~~~~~ 213 (330)
+.|+...+..+.+.+.+
T Consensus 450 ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 450 RAGDYSLVTRIADRLLE 466 (566)
T ss_dssp -----------------
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 88887777766666553
No 377
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=76.35 E-value=37 Score=27.02 Aligned_cols=21 Identities=24% Similarity=0.203 Sum_probs=14.3
Q ss_pred HHHHHHHhcCchHHHHHHHHH
Q 037620 296 NLKQALRDEGMEETAVVLAQK 316 (330)
Q Consensus 296 ~l~~~~~~~g~~~~a~~~~~~ 316 (330)
.++.++.+.|.+.+|..+...
T Consensus 130 Kli~l~y~~~~YsdalalIn~ 150 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINP 150 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHH
Confidence 456677778888887765543
No 378
>PRK10941 hypothetical protein; Provisional
Probab=76.32 E-value=37 Score=26.95 Aligned_cols=67 Identities=9% Similarity=-0.030 Sum_probs=29.4
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHH
Q 037620 156 VVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVST 223 (330)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 223 (330)
+-.+|.+.++++.|+.+.+.+.... +.++.-+.--.-.|.+.|.+..|..=++...+.....|+...
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 3334444555555555555554432 112333333333445555555555544444433333344333
No 379
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=76.25 E-value=17 Score=23.16 Aligned_cols=54 Identities=7% Similarity=0.001 Sum_probs=26.3
Q ss_pred HhCCCHHHHHHHHHHHHh----CCCCcc----HHHHHHHHHHHhccCChhHHHHHHHHHHhc
Q 037620 232 CYNAQVDMAMRIWDEMKA----RGVLPV----MHMYSTLINSLCHEDKLDDACKYFQEMLDI 285 (330)
Q Consensus 232 ~~~~~~~~a~~~~~~~~~----~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 285 (330)
.+.|++..|.+-+.+..+ .+.... ....-.+.......|++++|...+++.++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456666666554444332 222110 111222334455566677777666666543
No 380
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=76.23 E-value=38 Score=27.03 Aligned_cols=26 Identities=4% Similarity=0.105 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh
Q 037620 186 RTYDIVLHHLIKAGRTEEAYSVFKRM 211 (330)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (330)
..+..+...|++.++.+.+.+...+.
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~ 141 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRL 141 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 34444445555555555555444443
No 381
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=76.06 E-value=29 Score=25.70 Aligned_cols=70 Identities=17% Similarity=0.375 Sum_probs=43.1
Q ss_pred CCCCCCChhhHHHHHHHHHccCC----hHHHHHHHHHHhhCCCCCC----hHHHHHHHHHHhhccChHHHHHHHHHHH
Q 037620 3 KFGLKQELPDFNRLIDTLCKSRH----VERAQEVFDKMKKRRFDPD----IKSYTILLEGWGQQKNLLSMNEVYREMK 72 (330)
Q Consensus 3 ~~g~~~~~~~~~~li~~~~~~~~----~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 72 (330)
+.|+-+++..++.++..+.+..- .+-+..+=.+...++..++ ......=+..|-+.|||.+.=.+|-...
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~ 78 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVK 78 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHH
Confidence 36889999999999988876543 3444444344444443332 2233334566777888877777665554
No 382
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=75.97 E-value=23 Score=31.28 Aligned_cols=91 Identities=19% Similarity=0.046 Sum_probs=57.3
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHH
Q 037620 231 FCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETA 310 (330)
Q Consensus 231 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 310 (330)
+.-.|+...|...+.......+.-.....-.|.....+.|-..+|..++.+.+... ...+-++..+.+++.-..+++.|
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHH
Confidence 34457777777777665543222222234445555666667777777777776554 33455666677777777788888
Q ss_pred HHHHHHHHhcCC
Q 037620 311 VVLAQKIDKLRK 322 (330)
Q Consensus 311 ~~~~~~~~~~~~ 322 (330)
++.+++..++..
T Consensus 696 ~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 696 LEAFRQALKLTT 707 (886)
T ss_pred HHHHHHHHhcCC
Confidence 888877766554
No 383
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=75.93 E-value=11 Score=20.55 Aligned_cols=31 Identities=10% Similarity=0.250 Sum_probs=15.8
Q ss_pred ccCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 037620 268 HEDKLDDACKYFQEMLDIGIRPPGQLFSNLK 298 (330)
Q Consensus 268 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 298 (330)
+.|-.+++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444445555555555555555555544443
No 384
>PRK09687 putative lyase; Provisional
Probab=75.69 E-value=39 Score=26.99 Aligned_cols=223 Identities=9% Similarity=-0.029 Sum_probs=129.0
Q ss_pred CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcH----HHHHHHHHHHHhcCCCCChhh
Q 037620 77 EPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRL----SEALQFFGQSKKRGFEPEAPT 152 (330)
Q Consensus 77 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~ 152 (330)
.+|.......+.++...|. +.+...+..+... ++...-...+.++.+.|+. .++...+..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 3466666666666666664 3344444444332 3455555566666666653 4567777666443 356666
Q ss_pred HHHHHHHHHhhCCh-----hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHH
Q 037620 153 YNAVVGAYCWSMRI-----NDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIV 227 (330)
Q Consensus 153 ~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 227 (330)
-...+.++...+.. ..+...+..... .++..+-...+.++.+.++. .+...+-.+.++ ++...-...
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d----~~~~VR~~A 179 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDE-AAIPLLINLLKD----PNGDVRNWA 179 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcC----CCHHHHHHH
Confidence 66666666655421 223333333333 23556666777777777764 566666666552 333344445
Q ss_pred HHHHHhCC-CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCc
Q 037620 228 VRMFCYNA-QVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGM 306 (330)
Q Consensus 228 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 306 (330)
+.++...+ +...+...+..+.. .++..+-...+.++.+.++ ..|+..+-+.++.+ + .....+.++...|+
T Consensus 180 ~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 180 AFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGD 250 (280)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCC
Confidence 55555543 23456666655553 3466667777788888887 56777666666543 2 23467788888888
Q ss_pred hHHHHHHHHHHHhcCCC
Q 037620 307 EETAVVLAQKIDKLRKT 323 (330)
Q Consensus 307 ~~~a~~~~~~~~~~~~~ 323 (330)
. +|...+..+.+....
T Consensus 251 ~-~a~p~L~~l~~~~~d 266 (280)
T PRK09687 251 K-TLLPVLDTLLYKFDD 266 (280)
T ss_pred H-hHHHHHHHHHhhCCC
Confidence 5 677777777764433
No 385
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.56 E-value=67 Score=29.59 Aligned_cols=55 Identities=13% Similarity=0.003 Sum_probs=39.1
Q ss_pred HHHHHccCChHHHHHHHHHHhhCCCCC---ChHHHHHHHHHHhhccChHHHHHHHHHHHh
Q 037620 17 IDTLCKSRHVERAQEVFDKMKKRRFDP---DIKSYTILLEGWGQQKNLLSMNEVYREMKD 73 (330)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (330)
++.+.+.+.+++|++..+.... ..| -...+...|..+.-.|++++|-...-.|..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g 420 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG 420 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc
Confidence 4567788889999888776554 233 345677778888888888888777766653
No 386
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=75.53 E-value=30 Score=25.48 Aligned_cols=19 Identities=5% Similarity=0.184 Sum_probs=9.1
Q ss_pred HHhccCChhHHHHHHHHHH
Q 037620 265 SLCHEDKLDDACKYFQEML 283 (330)
Q Consensus 265 ~~~~~~~~~~a~~~~~~~~ 283 (330)
.|.+.|.+++|.+++++..
T Consensus 120 VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHhcCchHHHHHHHHHHh
Confidence 3444444444444444444
No 387
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=75.38 E-value=24 Score=24.89 Aligned_cols=60 Identities=17% Similarity=0.194 Sum_probs=30.7
Q ss_pred HHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC
Q 037620 34 DKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAK 94 (330)
Q Consensus 34 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 94 (330)
+.+.+.|++++.. -..++..+...++.-.|.++++.+.+.+...+..|....+..+...|
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344445444332 33445555555555666666666666655544444444444444444
No 388
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=75.32 E-value=44 Score=27.36 Aligned_cols=26 Identities=35% Similarity=0.351 Sum_probs=16.6
Q ss_pred HHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 297 LKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 297 l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
+...+..+|..+.|..+++-+.+.+.
T Consensus 160 ~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 160 LCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 33344567777777777777766655
No 389
>PHA02875 ankyrin repeat protein; Provisional
Probab=75.27 E-value=51 Score=28.05 Aligned_cols=78 Identities=10% Similarity=0.061 Sum_probs=37.7
Q ss_pred HHHHccCChHHHHHHHHHHhhCCCCCChHH--HHHHHHHHhhccChHHHHHHHHHHHhCCCCCChH--HHHHHHHHHhcc
Q 037620 18 DTLCKSRHVERAQEVFDKMKKRRFDPDIKS--YTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVV--SYGIMINAHCSA 93 (330)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~ 93 (330)
...+..|+.+-+..++ +.|..|+... ..+.+..++..|+.+ +.+.+.+.|..|+.. .....+...+..
T Consensus 7 ~~A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 7 CDAILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHC
Confidence 3344566665544443 4465555432 233445555666654 334444555444422 112334455566
Q ss_pred CcHHHHHHHH
Q 037620 94 KRYDEAVELF 103 (330)
Q Consensus 94 ~~~~~a~~~~ 103 (330)
|+.+.+..++
T Consensus 79 g~~~~v~~Ll 88 (413)
T PHA02875 79 GDVKAVEELL 88 (413)
T ss_pred CCHHHHHHHH
Confidence 7766554444
No 390
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=75.14 E-value=35 Score=30.62 Aligned_cols=25 Identities=8% Similarity=0.165 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHH
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDK 35 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~ 35 (330)
+..|+ .+..+.-.|.++.|.+++..
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 55666 67788888999999988843
No 391
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=74.91 E-value=14 Score=21.44 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=13.5
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHH
Q 037620 259 YSTLINSLCHEDKLDDACKYFQEML 283 (330)
Q Consensus 259 ~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (330)
.-.+|.++...|++++|.++++++.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3345555666666666666555554
No 392
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=74.33 E-value=6.9 Score=31.11 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=21.4
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhH
Q 037620 259 YSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLF 294 (330)
Q Consensus 259 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 294 (330)
|+..|+...+.||+++|++++++....|+.--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 345666666666666666666666666654434443
No 393
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=73.00 E-value=56 Score=27.54 Aligned_cols=56 Identities=13% Similarity=0.190 Sum_probs=36.0
Q ss_pred HHHhccCcHHHHHHHHHHHHhcCCCCChh--hHHHHHHHHHh--hCChhHHHHHHHHHHHc
Q 037620 123 NGLGSEKRLSEALQFFGQSKKRGFEPEAP--TYNAVVGAYCW--SMRINDAYRMMDEMRKC 179 (330)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~--~~~~~~a~~~~~~~~~~ 179 (330)
..+...+++..|.+++..+.+. ++++.. .+..+..+|.. .-++.+|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445778888888888888776 454444 34444444443 45677788888776654
No 394
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.28 E-value=4.1 Score=32.87 Aligned_cols=93 Identities=16% Similarity=0.097 Sum_probs=64.0
Q ss_pred hccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhhCChhHH
Q 037620 91 CSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPE-APTYNAVVGAYCWSMRINDA 169 (330)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a 169 (330)
...|.++.|++.|...+..+ ++....|..-.+++.+.+.+..|++=+......+ || ..-|-.-..+....|++++|
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHH
Confidence 34577888888888777776 6677777777778888888888888777777663 33 23344444445556888888
Q ss_pred HHHHHHHHHcCCCCcHH
Q 037620 170 YRMMDEMRKCGIGPNTR 186 (330)
Q Consensus 170 ~~~~~~~~~~~~~~~~~ 186 (330)
...+....+.++.+...
T Consensus 202 a~dl~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANS 218 (377)
T ss_pred HHHHHHHHhccccHHHH
Confidence 88888887776654443
No 395
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=72.18 E-value=22 Score=22.40 Aligned_cols=65 Identities=18% Similarity=0.218 Sum_probs=36.2
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHH
Q 037620 240 AMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETA 310 (330)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 310 (330)
+.++++.+.+.|+- +......+-.+-...|+.+.|..++..+. .| +..|...+.++...|.-+-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 44566666666654 44444444333335567777777777765 33 23455666666666654444
No 396
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=72.03 E-value=35 Score=30.72 Aligned_cols=91 Identities=9% Similarity=0.133 Sum_probs=54.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCC-CCCCchHHHHHHHHHHHhCCCHHH------HHHHHHHHHhCCCCccHHHHHHH
Q 037620 190 IVLHHLIKAGRTEEAYSVFKRMSRKP-GTEPTVSTYEIVVRMFCYNAQVDM------AMRIWDEMKARGVLPVMHMYSTL 262 (330)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~~l 262 (330)
+++.+|..+|++..+.++++.+.... +.+.-...+|..++.+.+.|.++- |.+.++.. .+.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 78888889999999888888876522 222234456777777888886542 22333322 244466777777
Q ss_pred HHHHhccCChhHHHHHHHHHH
Q 037620 263 INSLCHEDKLDDACKYFQEML 283 (330)
Q Consensus 263 ~~~~~~~~~~~~a~~~~~~~~ 283 (330)
+.+-..--.-....-++.+++
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 765544333333344444444
No 397
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=71.70 E-value=12 Score=21.68 Aligned_cols=46 Identities=15% Similarity=0.075 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHh
Q 037620 272 LDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 319 (330)
Q Consensus 272 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (330)
.+...++++.+... .-|..-...++.++...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444555555432 22444556789999999999999999988754
No 398
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=70.70 E-value=53 Score=26.27 Aligned_cols=190 Identities=12% Similarity=0.104 Sum_probs=116.4
Q ss_pred ccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHh----hccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhc----c
Q 037620 22 KSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWG----QQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCS----A 93 (330)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~ 93 (330)
..+++..+...+......+ +......+...|. ...+..+|.++|....+.|.. .....|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcc
Confidence 4567788888888777643 2233444444443 345678888989877776633 333334444444 3
Q ss_pred CcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccC-------cHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----
Q 037620 94 KRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEK-------RLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCW---- 162 (330)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 162 (330)
.+..+|..+|++..+.|.++...+...+...|.... +...|...+.++...+ +......+...|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 478899999999988884443333444544544431 3347888888888876 44555555555543
Q ss_pred hCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcC---------------CHHHHHHHHHHhhcCCCCCCchHHHH
Q 037620 163 SMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAG---------------RTEEAYSVFKRMSRKPGTEPTVSTYE 225 (330)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------~~~~a~~~~~~~~~~~~~~~~~~~~~ 225 (330)
..++.+|...|...-+.|. ......+- .+...| +...|...+..... .+.........
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~ 276 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACE-LGFDNACEALR 276 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHH-cCChhHHHHHH
Confidence 3478889999998888764 22222222 344444 77788888888776 44444444444
No 399
>PRK12798 chemotaxis protein; Reviewed
Probab=70.30 E-value=66 Score=27.24 Aligned_cols=152 Identities=16% Similarity=0.133 Sum_probs=71.5
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-hCChhHHHHHHHHHHHcCCCCcH----HHHHHHHHHHHHcCCHH
Q 037620 128 EKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCW-SMRINDAYRMMDEMRKCGIGPNT----RTYDIVLHHLIKAGRTE 202 (330)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~ 202 (330)
.|+..++.+.+..+.....++....+-.|+.+-.. ..++..|+.+|+...-. .|.. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 56666666666666655555555566666554433 34666677766665432 1221 22333334445666666
Q ss_pred HHHHHHHHhhcCCCCCCchHHH-HHHHHHHHhCCC---HHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHH
Q 037620 203 EAYSVFKRMSRKPGTEPTVSTY-EIVVRMFCYNAQ---VDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKY 278 (330)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 278 (330)
++..+-.....+....|-..-| ..+...+.+.++ .+....++..| ...--...|..+.+.-...|+.+-|.-.
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~---d~~~q~~lYL~iAR~Ali~Gk~~lA~~A 279 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFM---DPERQRELYLRIARAALIDGKTELARFA 279 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhc---CchhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 6555444444322222222111 122222223222 22222222222 1111234566666666666666666666
Q ss_pred HHHHHh
Q 037620 279 FQEMLD 284 (330)
Q Consensus 279 ~~~~~~ 284 (330)
-++...
T Consensus 280 s~~A~~ 285 (421)
T PRK12798 280 SERALK 285 (421)
T ss_pred HHHHHH
Confidence 665554
No 400
>PRK11619 lytic murein transglycosylase; Provisional
Probab=69.02 E-value=94 Score=28.50 Aligned_cols=117 Identities=13% Similarity=0.069 Sum_probs=59.2
Q ss_pred hCChhHHHHHHHHHHHcC-CCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHH
Q 037620 163 SMRINDAYRMMDEMRKCG-IGPNT--RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDM 239 (330)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (330)
..+.+.|...+....... ..+.. .....+.......+...++...+..... ...+......-+......++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHHH
Confidence 345677777777654322 22111 1222333222233224555555555432 11233334444555557777777
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 037620 240 AMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEML 283 (330)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (330)
+...+..|....- -...-..-+.+++...|+.++|...|+++.
T Consensus 331 ~~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777776643221 133344455666666777777777777653
No 401
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=68.93 E-value=12 Score=29.83 Aligned_cols=30 Identities=7% Similarity=0.037 Sum_probs=18.9
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHHhCCCC
Q 037620 48 YTILLEGWGQQKNLLSMNEVYREMKDDGFE 77 (330)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 77 (330)
|+..|....+.||+++|+.++++..+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 446666666666666666666666666644
No 402
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=68.81 E-value=39 Score=26.40 Aligned_cols=58 Identities=12% Similarity=0.105 Sum_probs=35.0
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHh----cC-CCCChhhHHHHHHHHHhcCchHHHHHHHHHH
Q 037620 260 STLINSLCHEDKLDDACKYFQEMLD----IG-IRPPGQLFSNLKQALRDEGMEETAVVLAQKI 317 (330)
Q Consensus 260 ~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 317 (330)
..+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+.=++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455666777777777777776642 12 1233445556666677777777766655444
No 403
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=68.67 E-value=17 Score=19.76 Aligned_cols=34 Identities=6% Similarity=0.096 Sum_probs=23.2
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 037620 231 FCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLIN 264 (330)
Q Consensus 231 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 264 (330)
..+.|-.+++..++++|.+.|+..+...+..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456666677777777777777766666666554
No 404
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=68.08 E-value=27 Score=21.96 Aligned_cols=14 Identities=21% Similarity=0.237 Sum_probs=6.6
Q ss_pred CcHHHHHHHHHHHH
Q 037620 94 KRYDEAVELFREME 107 (330)
Q Consensus 94 ~~~~~a~~~~~~~~ 107 (330)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444444
No 405
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=67.28 E-value=76 Score=26.78 Aligned_cols=56 Identities=14% Similarity=0.225 Sum_probs=36.5
Q ss_pred HHHHccCChHHHHHHHHHHhhCCCCCChH--HHHHHHHHHh--hccChHHHHHHHHHHHhC
Q 037620 18 DTLCKSRHVERAQEVFDKMKKRRFDPDIK--SYTILLEGWG--QQKNLLSMNEVYREMKDD 74 (330)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 74 (330)
..+...+++..|.++|+.+.++ ++++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455778888888888888876 555554 3444444443 345677788888777654
No 406
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.98 E-value=4.2 Score=32.79 Aligned_cols=95 Identities=11% Similarity=-0.007 Sum_probs=69.0
Q ss_pred hhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHH
Q 037620 56 GQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEAL 135 (330)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 135 (330)
...|.++.|++.|...+..+ ++....|..-.+++.+.+.+..|++=+......+ +.+..-|-.--.+....|++++|.
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein-~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN-PDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC-cccccccchhhHHHHHhhchHHHH
Confidence 45678999999998888874 5567777777788888899999988888777664 223333333334445578999999
Q ss_pred HHHHHHHhcCCCCChhh
Q 037620 136 QFFGQSKKRGFEPEAPT 152 (330)
Q Consensus 136 ~~~~~~~~~~~~~~~~~ 152 (330)
..+....+.++.+....
T Consensus 203 ~dl~~a~kld~dE~~~a 219 (377)
T KOG1308|consen 203 HDLALACKLDYDEANSA 219 (377)
T ss_pred HHHHHHHhccccHHHHH
Confidence 99999988876554433
No 407
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=66.43 E-value=56 Score=24.90 Aligned_cols=25 Identities=12% Similarity=0.036 Sum_probs=13.6
Q ss_pred HHHHHHhcCchHHHHHHHHHHHhcC
Q 037620 297 LKQALRDEGMEETAVVLAQKIDKLR 321 (330)
Q Consensus 297 l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (330)
+.....+.|+.++|.+++.++...+
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3444555566666666665555443
No 408
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=65.82 E-value=36 Score=22.48 Aligned_cols=88 Identities=9% Similarity=0.043 Sum_probs=42.8
Q ss_pred cCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHH
Q 037620 23 SRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVEL 102 (330)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 102 (330)
....++|..+.+.+...+. ....+--.-+..+.+.|++++|+ ..-. ....||...|.+| +-.+.|-.+++...
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL---l~~~-~~~~pdL~p~~AL--~a~klGL~~~~e~~ 91 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL---LLPQ-CHCYPDLEPWAAL--CAWKLGLASALESR 91 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH---HHHT-TS--GGGHHHHHH--HHHHCT-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH---Hhcc-cCCCccHHHHHHH--HHHhhccHHHHHHH
Confidence 3456777777777766532 11112222234456677777771 1111 1235666666544 34466666667666
Q ss_pred HHHHHhcCCCCChHHH
Q 037620 103 FREMEATNCKPSPHIF 118 (330)
Q Consensus 103 ~~~~~~~~~~~~~~~~ 118 (330)
+.++..+| .|....|
T Consensus 92 l~rla~~g-~~~~q~F 106 (116)
T PF09477_consen 92 LTRLASSG-SPELQAF 106 (116)
T ss_dssp HHHHCT-S-SHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 66666555 4443333
No 409
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=65.40 E-value=23 Score=23.45 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHh
Q 037620 47 SYTILLEGWGQQKNLLSMNEVYREMKD 73 (330)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (330)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488999999999999999999999887
No 410
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=65.32 E-value=1.1e+02 Score=27.88 Aligned_cols=165 Identities=11% Similarity=0.155 Sum_probs=96.2
Q ss_pred hhHHHHHHHHH-ccCChHHHHHHHHHHhhCCCCCChH-----HHHHHHHHHhhccChHHHHHHHHHHHhCC----CCCCh
Q 037620 11 PDFNRLIDTLC-KSRHVERAQEVFDKMKKRRFDPDIK-----SYTILLEGWGQQKNLLSMNEVYREMKDDG----FEPDV 80 (330)
Q Consensus 11 ~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~ 80 (330)
.++-.+...+. ...+++.|...+++.....-.++.. ....++..+.+.+... |...+++.++.- ..+-.
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 34555666666 5688999999999875532222222 2334566777776666 998888877651 11222
Q ss_pred HHHHHH-HHHHhccCcHHHHHHHHHHHHhcC---CCCChHHHHHHHHHH--hccCcHHHHHHHHHHHHhcC---------
Q 037620 81 VSYGIM-INAHCSAKRYDEAVELFREMEATN---CKPSPHIFCTLINGL--GSEKRLSEALQFFGQSKKRG--------- 145 (330)
Q Consensus 81 ~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~--------- 145 (330)
..|..+ +..+...+++..|.+.++.+.... ..|...++..++.+. .+.+..+++.+.++++....
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~ 218 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV 218 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC
Confidence 233333 223333479999999998876532 244445555555443 34555666777776663321
Q ss_pred CCCChhhHHHHHHHHH--hhCChhHHHHHHHHH
Q 037620 146 FEPEAPTYNAVVGAYC--WSMRINDAYRMMDEM 176 (330)
Q Consensus 146 ~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~ 176 (330)
..|...+|..++..++ ..|+++.+...++++
T Consensus 219 ~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 219 HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2345566777766554 456766766665554
No 411
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=65.02 E-value=98 Score=28.17 Aligned_cols=75 Identities=9% Similarity=0.189 Sum_probs=52.9
Q ss_pred HHHHHHHccCChHHHHHHHHHHhhC--CCCCChHHHHHHHHHHhhccChH------HHHHHHHHHHhCCCCCChHHHHHH
Q 037620 15 RLIDTLCKSRHVERAQEVFDKMKKR--RFDPDIKSYTILLEGWGQQKNLL------SMNEVYREMKDDGFEPDVVSYGIM 86 (330)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 86 (330)
+|+.+|..+|++..+.++++.+... |-+.=...||..|+...+.|.++ .|.+++++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 8999999999999999999998874 22223456788888888888764 3444444443 44577777777
Q ss_pred HHHHhc
Q 037620 87 INAHCS 92 (330)
Q Consensus 87 l~~~~~ 92 (330)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665444
No 412
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=64.91 E-value=31 Score=29.52 Aligned_cols=105 Identities=11% Similarity=0.091 Sum_probs=68.2
Q ss_pred HHHHhhccChHHHHHHHHHHHhCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCc
Q 037620 52 LEGWGQQKNLLSMNEVYREMKDDGFEPDV-VSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKR 130 (330)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 130 (330)
+.-+...++++.|..++.+.++. .||- ..|..-..++.+.+++..|+.=+.+.++.. +.....|..-..++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHH
Confidence 34455677888888888888876 4543 344444477888888888888777777765 3334444444455566666
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 037620 131 LSEALQFFGQSKKRGFEPEAPTYNAVVGAYC 161 (330)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (330)
+.+|...|+..... .|+..-....+.-|-
T Consensus 88 ~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 88 FKKALLDLEKVKKL--APNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHhhhc--CcCcHHHHHHHHHHH
Confidence 77777777766655 566655555554443
No 413
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=64.51 E-value=67 Score=25.11 Aligned_cols=60 Identities=12% Similarity=0.111 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh----CC-CCccHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 037620 224 YEIVVRMFCYNAQVDMAMRIWDEMKA----RG-VLPVMHMYSTLINSLCHEDKLDDACKYFQEML 283 (330)
Q Consensus 224 ~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (330)
...+..-|...|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+..+.+--++.
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34566777888888888888877642 12 22334555666777777888777776655443
No 414
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=64.51 E-value=62 Score=24.78 Aligned_cols=100 Identities=15% Similarity=0.224 Sum_probs=53.7
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCC---chHHH--HHHHHHHHhCCCHHHHHHHHHHHHhCCCCcc
Q 037620 181 IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEP---TVSTY--EIVVRMFCYNAQVDMAMRIWDEMKARGVLPV 255 (330)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 255 (330)
+.+...-++.|+--|.-...+.+|-..|..- .++.| +..++ ..-|......|+.+.|.+....+...-+..|
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e---~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKE---SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccc---cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 3455566666666666666666665555543 23333 22222 3445566777888888877776654333333
Q ss_pred HHHHHHHHH----HHhccCChhHHHHHHHHHH
Q 037620 256 MHMYSTLIN----SLCHEDKLDDACKYFQEML 283 (330)
Q Consensus 256 ~~~~~~l~~----~~~~~~~~~~a~~~~~~~~ 283 (330)
...+-.+.. -..+.|..++|+++.+.=+
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 322222221 2345666777777665443
No 415
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=64.06 E-value=29 Score=29.69 Aligned_cols=107 Identities=9% Similarity=0.023 Sum_probs=73.6
Q ss_pred HHHHHHHccCChHHHHHHHHHHhhCCCCCChHH-HHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhcc
Q 037620 15 RLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKS-YTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSA 93 (330)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 93 (330)
.-+..+.+.+.++.|..++....+. .||-.. |..-..++.+.+++..|+.=+..+++.. +--...|..-..++...
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMAL 85 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhH
Confidence 4455677889999999999999985 455443 4444478889999999998888888764 21233344444555566
Q ss_pred CcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHh
Q 037620 94 KRYDEAVELFREMEATNCKPSPHIFCTLINGLG 126 (330)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (330)
+.+.+|+..|+..... .|+..-....+.-|-
T Consensus 86 ~~~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKL--APNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHHhhhc--CcCcHHHHHHHHHHH
Confidence 6777888888777654 577666666665553
No 416
>PRK10941 hypothetical protein; Provisional
Probab=64.04 E-value=72 Score=25.36 Aligned_cols=78 Identities=8% Similarity=-0.025 Sum_probs=51.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcC-CCCChhhHHHHHHHHH
Q 037620 224 YEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIG-IRPPGQLFSNLKQALR 302 (330)
Q Consensus 224 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 302 (330)
.+.+-.+|.+.++++.|.++.+.+....+. ++.-+..-.-.|.+.|.+..|..=++..++.. -.|+.......+....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 345666778888888888888888876544 55556666667788888888888777776542 2344444444444433
No 417
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=62.78 E-value=57 Score=23.72 Aligned_cols=59 Identities=10% Similarity=0.031 Sum_probs=40.4
Q ss_pred CCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhH
Q 037620 215 PGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDD 274 (330)
Q Consensus 215 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 274 (330)
.|.+++..- ..++..+...++.-.|.++++.+.+.+..++..|...-+..+...|-+..
T Consensus 20 ~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 20 RNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred cCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 566666543 34555555566677889999998888777777666666677777776543
No 418
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=62.77 E-value=60 Score=23.98 Aligned_cols=48 Identities=8% Similarity=0.057 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhcCCCCC--hHHH-----HHHHHHHhccCcHHHHHHHHHHHHh
Q 037620 96 YDEAVELFREMEATNCKPS--PHIF-----CTLINGLGSEKRLSEALQFFGQSKK 143 (330)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~--~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (330)
.+.|+.+++.+.+.--.|. .... -..+..|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 4566666666655431221 0111 1233467777777777777777765
No 419
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=62.74 E-value=44 Score=22.44 Aligned_cols=71 Identities=14% Similarity=0.263 Sum_probs=42.8
Q ss_pred HHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC------------------CccHHHHHHHHHHHhcc
Q 037620 208 FKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV------------------LPVMHMYSTLINSLCHE 269 (330)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------~~~~~~~~~l~~~~~~~ 269 (330)
|..+....+..|...+...+...+..+. ..|..++++|.+.|. .+....+...+..+...
T Consensus 6 y~~L~~~~~~~~~~vtl~elA~~l~cS~--Rn~r~lLkkm~~~gWi~W~pg~GRG~~S~L~~l~~~~~~~~~~~~~~l~~ 83 (115)
T PF12793_consen 6 YQRLWQHYGGQPVEVTLDELAELLFCSR--RNARTLLKKMQEEGWITWQPGRGRGNRSQLTFLKSPEELLEQQAEELLEQ 83 (115)
T ss_pred HHHHHHHcCCCCcceeHHHHHHHhCCCH--HHHHHHHHHHHHCCCeeeeCCCCCCCCCeeEEeeCHHHHHHHHHHHHHHc
Confidence 3444433444455556666666554433 346777888877653 11234556666777788
Q ss_pred CChhHHHHHHH
Q 037620 270 DKLDDACKYFQ 280 (330)
Q Consensus 270 ~~~~~a~~~~~ 280 (330)
|+++.|.+++.
T Consensus 84 g~~~~a~~ll~ 94 (115)
T PF12793_consen 84 GKYEQALQLLD 94 (115)
T ss_pred CCHHHHHHHHH
Confidence 88888888776
No 420
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.46 E-value=1.6e+02 Score=28.90 Aligned_cols=24 Identities=25% Similarity=0.137 Sum_probs=16.1
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHh
Q 037620 296 NLKQALRDEGMEETAVVLAQKIDK 319 (330)
Q Consensus 296 ~l~~~~~~~g~~~~a~~~~~~~~~ 319 (330)
.+++.|.+-+++.+|..++-++.+
T Consensus 1375 ellrllVdy~rl~eA~dLlsEive 1398 (1480)
T KOG4521|consen 1375 ELLRLLVDYERLSEALDLLSEIVE 1398 (1480)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH
Confidence 456667777777777777666543
No 421
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=62.39 E-value=38 Score=21.57 Aligned_cols=19 Identities=21% Similarity=0.186 Sum_probs=9.0
Q ss_pred HHHHcCCHHHHHHHHHHhh
Q 037620 194 HLIKAGRTEEAYSVFKRMS 212 (330)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~ 212 (330)
.....|++++|...+++..
T Consensus 50 ~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 3344455555555554443
No 422
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=62.17 E-value=70 Score=25.87 Aligned_cols=71 Identities=13% Similarity=0.338 Sum_probs=54.2
Q ss_pred HHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhc----------cCChhH
Q 037620 205 YSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCH----------EDKLDD 274 (330)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~ 274 (330)
.++++.+.+ .++.|.-.++..+.-.+.+.=.+...+.+|+.+...... |..|+..|+. .|++..
T Consensus 263 ~EL~~~L~~-~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEE-KEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHh-cCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 466777765 689999888888888888888999999999998864222 5556655553 689988
Q ss_pred HHHHHHH
Q 037620 275 ACKYFQE 281 (330)
Q Consensus 275 a~~~~~~ 281 (330)
.+++++.
T Consensus 337 nmkLLQ~ 343 (370)
T KOG4567|consen 337 NMKLLQN 343 (370)
T ss_pred HHHHHhc
Confidence 8887764
No 423
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=62.14 E-value=84 Score=25.45 Aligned_cols=21 Identities=19% Similarity=0.591 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHhCCCHHHHH
Q 037620 221 VSTYEIVVRMFCYNAQVDMAM 241 (330)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~a~ 241 (330)
..+|..|+.+++..|+.+..+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 446888999999999876543
No 424
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=61.35 E-value=43 Score=21.85 Aligned_cols=52 Identities=8% Similarity=0.103 Sum_probs=28.4
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 037620 229 RMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 229 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 286 (330)
..+.+.|++++|..+.+.. ..||...|..|.. .+.|-.+.+..-+.+|...|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3455666666666655543 2455555555533 34555555555555555544
No 425
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=61.28 E-value=1e+02 Score=26.17 Aligned_cols=59 Identities=24% Similarity=0.112 Sum_probs=39.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhc--CCCCC-hhhHHHHHHHHHhhCChhHHHHHHHHHH
Q 037620 118 FCTLINGLGSEKRLSEALQFFGQSKKR--GFEPE-APTYNAVVGAYCWSMRINDAYRMMDEMR 177 (330)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (330)
.-.|++...-.|++....+.++.+.+. |..|. ..| --+.-+|.-.|++.+|.+.|-...
T Consensus 238 L~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VT-Y~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVT-YQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEe-eehhHHHHHHHHHHHHHHHHHHHH
Confidence 345667777788887777777776553 22232 233 345667788888999988877654
No 426
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=61.10 E-value=16 Score=16.97 Aligned_cols=27 Identities=15% Similarity=0.488 Sum_probs=12.5
Q ss_pred ChHHHHHHHHHHhhCCCCCChHHHHHHH
Q 037620 25 HVERAQEVFDKMKKRRFDPDIKSYTILL 52 (330)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 52 (330)
+++.|..+|+.+... .+-+...|...+
T Consensus 2 ~~~~~r~i~e~~l~~-~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEK-FPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHH-CCCChHHHHHHH
Confidence 445555555555542 223444444333
No 427
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=60.47 E-value=31 Score=20.29 Aligned_cols=30 Identities=10% Similarity=-0.044 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHhCC
Q 037620 46 KSYTILLEGWGQQKNLLSMNEVYREMKDDG 75 (330)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 75 (330)
..++.++..+++..-.+.++..+.++...|
T Consensus 9 ~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 9 PLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334444444444444444444444444443
No 428
>PRK13342 recombination factor protein RarA; Reviewed
Probab=59.64 E-value=1.1e+02 Score=26.13 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=12.8
Q ss_pred CChhHHHHHHHHHHHcCCCCcH
Q 037620 164 MRINDAYRMMDEMRKCGIGPNT 185 (330)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~ 185 (330)
++++.|+.++..|.+.|..|..
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~ 265 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLF 265 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHH
Confidence 4566666666666666554443
No 429
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=59.53 E-value=1.2e+02 Score=26.21 Aligned_cols=76 Identities=13% Similarity=0.159 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 037620 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSL 266 (330)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 266 (330)
-...|+.-|...|+..+|...++++-- ........+.+++.+..+.|+-...+.+++..-..|.. |-+.+-++|
T Consensus 511 kI~~LLeEY~~~GdisEA~~CikeLgm--PfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI----T~nQMtkGf 584 (645)
T KOG0403|consen 511 KIDMLLEEYELSGDISEACHCIKELGM--PFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI----TTNQMTKGF 584 (645)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHhCC--CcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce----eHHHhhhhh
Confidence 345688889999999999999998754 34445677889999999999988888888877766554 455665665
Q ss_pred hc
Q 037620 267 CH 268 (330)
Q Consensus 267 ~~ 268 (330)
.+
T Consensus 585 ~R 586 (645)
T KOG0403|consen 585 ER 586 (645)
T ss_pred hh
Confidence 44
No 430
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.35 E-value=1.6e+02 Score=27.91 Aligned_cols=177 Identities=14% Similarity=0.212 Sum_probs=104.5
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHH
Q 037620 93 AKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRM 172 (330)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (330)
..++++.+.+.+...--| .++|..+.+.|-.+-|+.+.+. ..+- ...+..+|+.+.|++.
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD---------~~tR---F~LaLe~gnle~ale~ 665 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKD---------ERTR---FELALECGNLEVALEA 665 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecC---------cchh---eeeehhcCCHHHHHHH
Confidence 345566555544322222 3345555666766666655432 2211 1234567888888765
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 037620 173 MDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV 252 (330)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 252 (330)
-..+ .+..+|..|.......|+.+-|+..|++... |..|--.|.-.|+.++..++.+.....+
T Consensus 666 akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn----------fekLsfLYliTgn~eKL~Km~~iae~r~- 728 (1202)
T KOG0292|consen 666 AKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN----------FEKLSFLYLITGNLEKLSKMMKIAEIRN- 728 (1202)
T ss_pred HHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh----------hhheeEEEEEeCCHHHHHHHHHHHHhhh-
Confidence 5443 2667899999999999999999999987654 3344445677788887777766554331
Q ss_pred CccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhc
Q 037620 253 LPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKL 320 (330)
Q Consensus 253 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (330)
|..+ ......-.|+.++-.++++.. |..| ..| .....+|.-++|.++.++..+.
T Consensus 729 --D~~~---~~qnalYl~dv~ervkIl~n~---g~~~--lay----lta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 729 --DATG---QFQNALYLGDVKERVKILENG---GQLP--LAY----LTAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred --hhHH---HHHHHHHhccHHHHHHHHHhc---Cccc--HHH----HHHhhcCcHHHHHHHHHhhccc
Confidence 2211 112223467777777776544 3222 111 1234567788888888887763
No 431
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.28 E-value=1.7e+02 Score=27.98 Aligned_cols=112 Identities=13% Similarity=0.040 Sum_probs=63.4
Q ss_pred HHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC--------HHHHHHH-----HHHhhc-CCCCCCc---
Q 037620 158 GAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGR--------TEEAYSV-----FKRMSR-KPGTEPT--- 220 (330)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~a~~~-----~~~~~~-~~~~~~~--- 220 (330)
-.|......+.+..+++.+....-.++....+.++..|+..=+ -+++.+. +..+.+ .....|.
T Consensus 599 l~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L 678 (877)
T KOG2063|consen 599 LNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLL 678 (877)
T ss_pred HHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhh
Confidence 3466777888899999998876555667777777776654311 1122222 111111 1122222
Q ss_pred -----hHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-------------CCCccHHHHHHHHHHHhcc
Q 037620 221 -----VSTYEIVVRMFCYNAQVDMAMRIWDEMKAR-------------GVLPVMHMYSTLINSLCHE 269 (330)
Q Consensus 221 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------~~~~~~~~~~~l~~~~~~~ 269 (330)
...|....-.+.+.|+.++|+.++-..... ...++...|..+++.|...
T Consensus 679 ~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 679 ERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred hhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence 222333333345788888888887655431 1234667788888877765
No 432
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=59.11 E-value=91 Score=24.91 Aligned_cols=84 Identities=14% Similarity=0.196 Sum_probs=38.0
Q ss_pred hccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhc----cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc----c
Q 037620 57 QQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCS----AKRYDEAVELFREMEATNCKPSPHIFCTLINGLGS----E 128 (330)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 128 (330)
..+++..+...+......+ +......+...|.. ..+...|.++|....+.|. ......|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcc
Confidence 3455566666666655432 11222223333322 2245556666665554442 1222233333333 2
Q ss_pred CcHHHHHHHHHHHHhcCC
Q 037620 129 KRLSEALQFFGQSKKRGF 146 (330)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~ 146 (330)
.+..+|..++.++.+.|.
T Consensus 127 ~d~~~A~~~~~~Aa~~g~ 144 (292)
T COG0790 127 LDLVKALKYYEKAAKLGN 144 (292)
T ss_pred cCHHHHHHHHHHHHHcCC
Confidence 355555555555555553
No 433
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=58.69 E-value=14 Score=25.49 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 037620 235 AQVDMAMRIWDEMKARGVLPVMHMYSTLINS 265 (330)
Q Consensus 235 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (330)
|.-..|-.+|+.|.+.|-+|| .|+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 444456666666666666554 35555543
No 434
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=58.40 E-value=45 Score=21.15 Aligned_cols=33 Identities=18% Similarity=0.103 Sum_probs=16.4
Q ss_pred CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 112 KPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
|.|...-..+...+...|++++|++.+-.+.+.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344445555555555555555555555555444
No 435
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=57.73 E-value=1.2e+02 Score=26.03 Aligned_cols=61 Identities=15% Similarity=0.217 Sum_probs=43.5
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhcCCC--CChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 259 YSTLINSLCHEDKLDDACKYFQEMLDIGIR--PPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 259 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
...|+.-|...|+..+|...++++ |++ .....+..++.+..+.|+-.....++++.-+.|.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeL---gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKEL---GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHh---CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 456778888899999999988877 432 1344566777788888887777777776655443
No 436
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=56.98 E-value=91 Score=24.24 Aligned_cols=103 Identities=15% Similarity=0.222 Sum_probs=67.5
Q ss_pred HHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC-----------CCCchHHHHHHH
Q 037620 160 YCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPG-----------TEPTVSTYEIVV 228 (330)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~~~~~~l~ 228 (330)
|.+..+..-..++.+-....+++-+..-+.+++ +...|+...|+.-++.-....| ..|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 445555555555555555566666666666555 3467888888888877654222 246666666777
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 037620 229 RMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSL 266 (330)
Q Consensus 229 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 266 (330)
..| ..+++++|.+++.++-+.|..|. ...+.+.+.+
T Consensus 247 ~~~-~~~~~~~A~~il~~lw~lgysp~-Dii~~~FRv~ 282 (333)
T KOG0991|consen 247 QAC-LKRNIDEALKILAELWKLGYSPE-DIITTLFRVV 282 (333)
T ss_pred HHH-HhccHHHHHHHHHHHHHcCCCHH-HHHHHHHHHH
Confidence 654 45689999999999999998864 3455555554
No 437
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=56.29 E-value=76 Score=23.09 Aligned_cols=64 Identities=9% Similarity=0.032 Sum_probs=43.0
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHH
Q 037620 174 DEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDM 239 (330)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (330)
+.+...|++.+..- ..++..+...++.-.|.++++.+.+ .+..++..|....+..+...|-+.+
T Consensus 15 ~~L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~-~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 15 KLCAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLRE-AEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHh-hCCCCCcchHHHHHHHHHHCCCEEE
Confidence 34556787766543 3555666666777789999999987 4556666666666777777776543
No 438
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=56.21 E-value=36 Score=22.61 Aligned_cols=46 Identities=9% Similarity=0.120 Sum_probs=25.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCCh
Q 037620 227 VVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKL 272 (330)
Q Consensus 227 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 272 (330)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 3444444455556666666666665555555555555555555543
No 439
>PRK09857 putative transposase; Provisional
Probab=56.19 E-value=1.1e+02 Score=24.79 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=12.4
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 296 NLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 296 ~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
++++-+.+.|.-+++.++.++|...|.
T Consensus 245 TiAEqL~qeG~qe~~~~ia~~ml~~g~ 271 (292)
T PRK09857 245 TIAERLRQEGEQSKALHIAKIMLESGV 271 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344444444444444445555544444
No 440
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=55.37 E-value=1.2e+02 Score=25.32 Aligned_cols=56 Identities=2% Similarity=-0.138 Sum_probs=30.3
Q ss_pred HHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHhh
Q 037620 157 VGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLI-KAGRTEEAYSVFKRMS 212 (330)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 212 (330)
+..+.+.|-+..|.++.+-+...+..-|+.....+|+.|+ +.++++--+++.+...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 3445556666666666666666544334444444555443 4555555555555543
No 441
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=55.33 E-value=1.3e+02 Score=25.60 Aligned_cols=60 Identities=22% Similarity=0.154 Sum_probs=42.5
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhc--C----C-CCChhhHHHHHHHHHhhCChhHHHHHHHHHH
Q 037620 118 FCTLINGLGSEKRLSEALQFFGQSKKR--G----F-EPEAPTYNAVVGAYCWSMRINDAYRMMDEMR 177 (330)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (330)
...|++.++-.||+..|+++++.+.-. + + .-.+.++--+.-+|...+++.+|.++|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888889999999988765321 1 1 1234556667778888899999998888764
No 442
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=55.19 E-value=1.1e+02 Score=24.78 Aligned_cols=71 Identities=20% Similarity=0.276 Sum_probs=50.5
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----------cCchHHH
Q 037620 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRD----------EGMEETA 310 (330)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~a 310 (330)
.++|+.+.+.++.|.-.++.-+.-.+.+.=.+.+.+.+|+.+...... |..|+..|+. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 568888888899998888887777778888889999999988753222 4444444332 5777766
Q ss_pred HHHHHH
Q 037620 311 VVLAQK 316 (330)
Q Consensus 311 ~~~~~~ 316 (330)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 666654
No 443
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=54.30 E-value=60 Score=21.62 Aligned_cols=36 Identities=14% Similarity=0.001 Sum_probs=22.0
Q ss_pred HHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 037620 52 LEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMIN 88 (330)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (330)
++.+.++...++|+++++.|.+.| ..+...-+.|-.
T Consensus 68 iD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~ 103 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRS 103 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 444566677777888888777776 345444444333
No 444
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=54.26 E-value=96 Score=23.66 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCCCC-----ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcC
Q 037620 97 DEAVELFREMEATNCKP-----SPHIFCTLINGLGSEKRLSEALQFFGQSKKRG 145 (330)
Q Consensus 97 ~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (330)
..|.+.|.+..+..-.| ...+...+.....+.|+.++|.+.|.++...+
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 45666666655432111 12233344556666777777777777776654
No 445
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.94 E-value=1.5e+02 Score=25.96 Aligned_cols=43 Identities=5% Similarity=-0.011 Sum_probs=27.0
Q ss_pred HHHHHHHHHH-HcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 037620 168 DAYRMMDEMR-KCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMS 212 (330)
Q Consensus 168 ~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (330)
.....++.+. ..|+..+......++. ...|+...|+.+++.+.
T Consensus 184 ~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 184 VLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAI 227 (484)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHH
Confidence 3444454443 3566666666655553 35688888888888754
No 446
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=53.81 E-value=33 Score=23.03 Aligned_cols=44 Identities=11% Similarity=0.182 Sum_probs=19.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccC
Q 037620 227 VVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHED 270 (330)
Q Consensus 227 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 270 (330)
++..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 34444444445555555555555544444443333334444443
No 447
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=53.71 E-value=63 Score=21.39 Aligned_cols=27 Identities=11% Similarity=0.154 Sum_probs=16.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHh
Q 037620 117 IFCTLINGLGSEKRLSEALQFFGQSKK 143 (330)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (330)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 355666666666666666666666554
No 448
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=53.65 E-value=1.8e+02 Score=26.62 Aligned_cols=87 Identities=14% Similarity=0.127 Sum_probs=37.3
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-CccHHHHHHHHHHHhc--
Q 037620 192 LHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV-LPVMHMYSTLINSLCH-- 268 (330)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~-- 268 (330)
...+.-.|+++.|.+.+-+. .....+..++...+..|.-.+-..... ..+..... .|.+-.+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~~---~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRN---EFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT-----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHhh---ccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 34456678889888888762 244556666555554332222111111 22221110 1111446666666654
Q ss_pred -cCChhHHHHHHHHHHh
Q 037620 269 -EDKLDDACKYFQEMLD 284 (330)
Q Consensus 269 -~~~~~~a~~~~~~~~~ 284 (330)
..+..+|++++--+..
T Consensus 339 ~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 339 EITDPREALQYLYLICL 355 (613)
T ss_dssp TTT-HHHHHHHHHGGGG
T ss_pred hccCHHHHHHHHHHHHH
Confidence 4566777777666554
No 449
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=53.58 E-value=1.3e+02 Score=25.15 Aligned_cols=55 Identities=5% Similarity=-0.116 Sum_probs=31.6
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHh-ccCChhHHHHHHHHHH
Q 037620 229 RMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLC-HEDKLDDACKYFQEML 283 (330)
Q Consensus 229 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 283 (330)
..+.+.|-+..|.++.+-+...++.-|+.....+|+.|+ +.++++--+++.+...
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 445566667777776666666655545555555555443 4555555555555543
No 450
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=53.41 E-value=1.2e+02 Score=24.42 Aligned_cols=200 Identities=11% Similarity=0.163 Sum_probs=113.2
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCCCCChHH-------HHHHHHHHhccCcHHHHHHHHHHHH----hcCCCCChhhH
Q 037620 85 IMINAHCSAKRYDEAVELFREMEATNCKPSPHI-------FCTLINGLGSEKRLSEALQFFGQSK----KRGFEPEAPTY 153 (330)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~ 153 (330)
.+.+-..+.+++++|+..+.++...|+..+..+ ...+...|...|++...-+...... +-.-+......
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 356667788999999999999999987776544 3456778888888877666654432 22222223344
Q ss_pred HHHHHHHHhh-CChhHHHHHHHHHHHcCCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHhhc---CCCCCCchHHH
Q 037620 154 NAVVGAYCWS-MRINDAYRMMDEMRKCGIGPNT-----RTYDIVLHHLIKAGRTEEAYSVFKRMSR---KPGTEPTVSTY 224 (330)
Q Consensus 154 ~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~ 224 (330)
..++..+-.. ..++..+.+.....+...+... ..-.-++..+.+.|.+.+|+.+...+.. +...+|+..+.
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 5555554432 3456666666655543222111 2223466778889999999887665542 13445554443
Q ss_pred HHH-HHHHHhCCCHHHHHHHHHHHHhC----CCCccHHHHHHHHHHH--hccCChhHHHHHHHHHHh
Q 037620 225 EIV-VRMFCYNAQVDMAMRIWDEMKAR----GVLPVMHMYSTLINSL--CHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 225 ~~l-~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~ 284 (330)
..+ -..|-...+..++..-+...+.. -.+|-...--.++.+. |...++.-|...|-+..+
T Consensus 168 hllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 168 HLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 222 23444555566555555443321 1222222222333332 345567777777777665
No 451
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=53.32 E-value=1.3e+02 Score=24.84 Aligned_cols=60 Identities=18% Similarity=0.268 Sum_probs=34.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCC--CCCCchHHH--HHHHHHHHhCCCHHHHHHHHHHHHh
Q 037620 190 IVLHHLIKAGRTEEAYSVFKRMSRKP--GTEPTVSTY--EIVVRMFCYNAQVDMAMRIWDEMKA 249 (330)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~ 249 (330)
.++...-+.++.++|.++++++.++. ...|+...| ....+++...|+..++.+++++..+
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34444455567777777777765421 123344433 3444555666777777777766655
No 452
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=52.47 E-value=78 Score=22.10 Aligned_cols=68 Identities=7% Similarity=0.060 Sum_probs=40.9
Q ss_pred CCchHHHHHHHHHHHhCC---CHHHHHHHHHHHHhC-CCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhc
Q 037620 218 EPTVSTYEIVVRMFCYNA---QVDMAMRIWDEMKAR-GVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDI 285 (330)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 285 (330)
.++..+--.+..++.++. +..+.+.+++++.+. ...-.......|.-++.+.++++.++++.+.+++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 445555455555666554 455667777777752 22222233344555777888888888888887764
No 453
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=52.47 E-value=1.1e+02 Score=23.62 Aligned_cols=64 Identities=19% Similarity=0.200 Sum_probs=29.7
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCC---ChHHHH--HHHHHHhhccChHHHHHHHHHHH
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDP---DIKSYT--ILLEGWGQQKNLLSMNEVYREMK 72 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~ 72 (330)
.+...-+|.|+--|.-...+.+|-..|..- .++.| |..+++ .-|......|+++.|++...++.
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 344444555554444444444444444322 22222 222222 23445566666666666665554
No 454
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=52.34 E-value=57 Score=21.88 Aligned_cols=48 Identities=25% Similarity=0.094 Sum_probs=29.7
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCH
Q 037620 154 NAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRT 201 (330)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (330)
..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-.
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 345556666666777777777777776666666655566666665543
No 455
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=52.24 E-value=1.6e+02 Score=25.75 Aligned_cols=259 Identities=8% Similarity=-0.019 Sum_probs=0.0
Q ss_pred HHHHccCChHHHHHHHHHHhhCCCCCChHH--------HHHHHHHHhhccChHHHHHHHHHHHh-------CCCCC----
Q 037620 18 DTLCKSRHVERAQEVFDKMKKRRFDPDIKS--------YTILLEGWGQQKNLLSMNEVYREMKD-------DGFEP---- 78 (330)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~---- 78 (330)
..+.-.|++.+|.+++...--..-+.-..| ||.|...+.+.|.+..+..+|.+..+ .|++|
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Q ss_pred ------ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCC----
Q 037620 79 ------DVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEP---- 148 (330)
Q Consensus 79 ------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---- 148 (330)
.-.......-.|...|++-.|.+.|.+....- ..++..|-.+..+|....+-....+-=....+.+++.
T Consensus 328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf-h~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig 406 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF-HRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIG 406 (696)
T ss_pred ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeec
Q ss_pred --------------------------------------------------------------------------------
Q 037620 149 -------------------------------------------------------------------------------- 148 (330)
Q Consensus 149 -------------------------------------------------------------------------------- 148 (330)
T Consensus 407 ~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~ 486 (696)
T KOG2471|consen 407 KGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHK 486 (696)
T ss_pred ccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCC
Q ss_pred ---------------------ChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHH-----------
Q 037620 149 ---------------------EAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLI----------- 196 (330)
Q Consensus 149 ---------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----------- 196 (330)
-...|....-.-...|+.-.|+..-+++.+ .+.-...|..+...|+
T Consensus 487 gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq--~~~lS~~~kfLGHiYAaEAL~lldr~s 564 (696)
T KOG2471|consen 487 GDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQ--LADLSKIYKFLGHIYAAEALCLLDRPS 564 (696)
T ss_pred CCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHh--hhhhhhHHHHHHHHHHHHHHHHcCChh
Q ss_pred --------------------HcCCHHHHHHHHHHhhcCCCCCCchH----------HHHHHHHHHHhCCCHHHHHHHH--
Q 037620 197 --------------------KAGRTEEAYSVFKRMSRKPGTEPTVS----------TYEIVVRMFCYNAQVDMAMRIW-- 244 (330)
Q Consensus 197 --------------------~~~~~~~a~~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~a~~~~-- 244 (330)
...+++.=+.--+.|....+..|+.. .+..|..+++-.|++++|..++
T Consensus 565 eA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~ 644 (696)
T KOG2471|consen 565 EAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTH 644 (696)
T ss_pred hhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHH
Q ss_pred -HHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHH
Q 037620 245 -DEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQE 281 (330)
Q Consensus 245 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 281 (330)
..|...-+.|........|+ .+.|+...|...+++
T Consensus 645 aatl~hs~v~~~A~~lavyid--L~~G~~q~al~~lk~ 680 (696)
T KOG2471|consen 645 AATLLHSLVNVQATVLAVYID--LMLGRSQDALARLKQ 680 (696)
T ss_pred HHHhhhccccHHHHHHHHHHH--HhcCCCcchHHHHHh
No 456
>PRK09462 fur ferric uptake regulator; Provisional
Probab=51.88 E-value=82 Score=22.20 Aligned_cols=58 Identities=9% Similarity=0.063 Sum_probs=38.2
Q ss_pred CCCCCchHHHHHHHHHHHhC-CCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChh
Q 037620 215 PGTEPTVSTYEIVVRMFCYN-AQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLD 273 (330)
Q Consensus 215 ~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 273 (330)
.|.+++..- ..++..+... +..-.|.++++.+.+.+...+..|...-+..+...|-..
T Consensus 11 ~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 11 AGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred cCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 466665543 3445555544 467788999999888877666666666667777777553
No 457
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=51.88 E-value=62 Score=21.49 Aligned_cols=47 Identities=21% Similarity=0.102 Sum_probs=27.5
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHH
Q 037620 156 VVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTE 202 (330)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (330)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 34444444555666677777766665556666555666666655433
No 458
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=51.71 E-value=75 Score=21.71 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhCCCCc-cHHHHHHHHHHHhccCChhHHHHHHH
Q 037620 239 MAMRIWDEMKARGVLP-VMHMYSTLINSLCHEDKLDDACKYFQ 280 (330)
Q Consensus 239 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 280 (330)
.+.++|..|...|+-- .+..|......+...|++++|.++++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444444433221 22334444444444455555554444
No 459
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=51.54 E-value=39 Score=26.00 Aligned_cols=55 Identities=11% Similarity=0.159 Sum_probs=36.3
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 037620 231 FCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 231 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 286 (330)
..+.++.+.+-+++.+..+.-.. ....|..+...-.+.|+++.|.+.|++.++..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~-w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPE-WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCch-hhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 44566777777777776665333 44566666666677777777777777777543
No 460
>PHA02875 ankyrin repeat protein; Provisional
Probab=51.29 E-value=1.5e+02 Score=25.16 Aligned_cols=62 Identities=18% Similarity=0.160 Sum_probs=30.4
Q ss_pred CCCCCChhh--HHHHHHHHHccCChHHHHHHHHHHhhCCCCCChH--HHHHHHHHHhhccChHHHHHHHH
Q 037620 4 FGLKQELPD--FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIK--SYTILLEGWGQQKNLLSMNEVYR 69 (330)
Q Consensus 4 ~g~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~ 69 (330)
.|..|+... ..+.+...+..|+.+- .+.+.+.|..|+.. ...+.+...+..|+.+.+..+++
T Consensus 24 ~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 24 IGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred CCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence 455554432 3344555566666653 33444455444432 11234445566777766555443
No 461
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=50.66 E-value=60 Score=20.28 Aligned_cols=34 Identities=12% Similarity=0.284 Sum_probs=25.6
Q ss_pred CCCCChhhHHHHHHHHHccCChHHHHHHHHHHhh
Q 037620 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKK 38 (330)
Q Consensus 5 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 38 (330)
.+.|+...||.++......+...-|..++.+...
T Consensus 11 ~F~pt~~~yn~yiN~~~~~nkVaPa~n~L~r~V~ 44 (83)
T PF10963_consen 11 TFNPTPTAYNKYINEMAMDNKVAPAHNYLMRIVD 44 (83)
T ss_pred EeccCHHHHHHHHHHhccCCCchHHHHHHHHHcC
Confidence 4678888888888888888877777777666554
No 462
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=49.71 E-value=46 Score=18.62 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=13.3
Q ss_pred HHHHHhccCChhHHHHHHHHHHhc
Q 037620 262 LINSLCHEDKLDDACKYFQEMLDI 285 (330)
Q Consensus 262 l~~~~~~~~~~~~a~~~~~~~~~~ 285 (330)
+.-++.+.|++++|.+..+.+++.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh
Confidence 334555666666666666666643
No 463
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=49.70 E-value=2.8e+02 Score=27.69 Aligned_cols=26 Identities=8% Similarity=-0.146 Sum_probs=14.8
Q ss_pred CChHHHHHHHHHHhhccChHHHHHHH
Q 037620 43 PDIKSYTILLEGWGQQKNLLSMNEVY 68 (330)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~ 68 (330)
+....|..+...+-+.++.++|+..-
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~ 996 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQ 996 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhc
Confidence 34455556666666666666665543
No 464
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=49.49 E-value=51 Score=19.14 Aligned_cols=12 Identities=33% Similarity=0.407 Sum_probs=4.3
Q ss_pred CcHHHHHHHHHH
Q 037620 94 KRYDEAVELFRE 105 (330)
Q Consensus 94 ~~~~~a~~~~~~ 105 (330)
|++-+|.++++.
T Consensus 13 g~f~EaHEvlE~ 24 (62)
T PF03745_consen 13 GDFFEAHEVLEE 24 (62)
T ss_dssp T-HHHHHHHHHH
T ss_pred CCHHHhHHHHHH
Confidence 333333333333
No 465
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=49.03 E-value=2.6e+02 Score=27.15 Aligned_cols=205 Identities=7% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHH-------------HHHHhccCcHH
Q 037620 66 EVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTL-------------INGLGSEKRLS 132 (330)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------------~~~~~~~~~~~ 132 (330)
++|++..+. ++..+.....-+.+..|.++-+.+....+.+.- .....+-+.+ +.+......++
T Consensus 677 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 (932)
T PRK13184 677 ELFQRAWDL---RDYRALADIFYVACDLGNWEFFSQFSDILAEVS-DEITFTESIVEQKVEELMFFLKGLEALSNKEDYE 752 (932)
T ss_pred HHHHHHhhc---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-hhccchHHHHhhhHHHHHHHHHHHHHHHccccHH
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHH
Q 037620 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNT--RTYDIVLHHLIKAGRTEEAYSVFKR 210 (330)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (330)
++.+.+......-+ ...+..++.-..-.++.+......+.+.+.-.+... ......+.+|.-..++++|.+++..
T Consensus 753 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (932)
T PRK13184 753 KAFKHLDNTDPTLI---LYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNR 829 (932)
T ss_pred HHHhhhhhCCHHHH---HHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHh
Q ss_pred hhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHH
Q 037620 211 MSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQE 281 (330)
Q Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 281 (330)
...+.........+-.-...++-.++-+.|...|....+.-+-| -......+.-.|...+...++++
T Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 896 (932)
T PRK13184 830 YPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCREDALFP----RSLDGDIFDYLGKISDNLSWWEK 896 (932)
T ss_pred CChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhccccccCc----chhhccccchhccccccccHHHH
No 466
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=48.90 E-value=1.9e+02 Score=25.63 Aligned_cols=84 Identities=10% Similarity=0.224 Sum_probs=47.7
Q ss_pred HHHHHHHHH-HHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC---CC------------CchHHHHHHHHHH
Q 037620 168 DAYRMMDEM-RKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPG---TE------------PTVSTYEIVVRMF 231 (330)
Q Consensus 168 ~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~------------~~~~~~~~l~~~~ 231 (330)
+....+... .+.|+..+......++.. ..|++..|...++++..-.+ .. ++....-.++.+.
T Consensus 191 el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ai 268 (507)
T PRK06645 191 EIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVEYI 268 (507)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 444444443 345666666666665543 46888888888887743111 01 1111222333333
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCc
Q 037620 232 CYNAQVDMAMRIWDEMKARGVLP 254 (330)
Q Consensus 232 ~~~~~~~~a~~~~~~~~~~~~~~ 254 (330)
..|+...|+.+++++...|..|
T Consensus 269 -~~~d~~~Al~~l~~L~~~g~~~ 290 (507)
T PRK06645 269 -IHRETEKAINLINKLYGSSVNL 290 (507)
T ss_pred -HcCCHHHHHHHHHHHHHcCCCH
Confidence 3477778888888877777664
No 467
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.75 E-value=2.4e+02 Score=26.74 Aligned_cols=51 Identities=22% Similarity=0.203 Sum_probs=33.6
Q ss_pred HHHHHHccCChHHHHHHHHHHhhCCCCCChH--HHHHHHHHHhhccChHHHHHHHHHHH
Q 037620 16 LIDTLCKSRHVERAQEVFDKMKKRRFDPDIK--SYTILLEGWGQQKNLLSMNEVYREMK 72 (330)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~ 72 (330)
+=..|...|++++|+++-.. +|+.. .+..-...|.+.+++..|-+++.++.
T Consensus 364 vWk~yLd~g~y~kAL~~ar~------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIART------RPDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHHHhcchHHHHHHhccC------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 44567788999999876432 23332 23333456777788888888888774
No 468
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=48.57 E-value=1.5e+02 Score=24.33 Aligned_cols=150 Identities=9% Similarity=0.087 Sum_probs=77.4
Q ss_pred ChHHHHHHHHHHhhCCCC-------------CChHHHHHHHHHHhhccChHHHHHHHHHHHhC-CCCCChHHHHHHHHHH
Q 037620 25 HVERAQEVFDKMKKRRFD-------------PDIKSYTILLEGWGQQKNLLSMNEVYREMKDD-GFEPDVVSYGIMINAH 90 (330)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~-------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~ 90 (330)
+.+....+++.+.+.+.. .|...++.|... +..++++..+..++..+. |-.--...+......|
T Consensus 37 ~~~~~e~l~~~Ird~~Map~Ye~lce~~~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYy 114 (393)
T KOG0687|consen 37 KAAAREKLLAAIRDEDMAPLYEYLCESLVIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYY 114 (393)
T ss_pred CHHHHHHHHHHHHhcccchHHHHHHhhcceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 444445555555554433 344444444432 222344444444444433 2222234566677789
Q ss_pred hccCcHHHHHHHHHHHHh----cCCCCChHHHHHHHH-HHhccCcHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHH
Q 037620 91 CSAKRYDEAVELFREMEA----TNCKPSPHIFCTLIN-GLGSEKRLSEALQFFGQSKKRGFEPE----APTYNAVVGAYC 161 (330)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~ 161 (330)
++.|+-+.|++.+.+..+ .|.+.|...+..-+. .|....-..+-++..+.+.+.|..-+ ..+|..+- +.
T Consensus 115 cqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~m 192 (393)
T KOG0687|consen 115 CQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CM 192 (393)
T ss_pred HHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HH
Confidence 999999998888776544 355555554443332 23333334444555555566654322 23343332 33
Q ss_pred hhCChhHHHHHHHHHHH
Q 037620 162 WSMRINDAYRMMDEMRK 178 (330)
Q Consensus 162 ~~~~~~~a~~~~~~~~~ 178 (330)
..+++.+|-.+|-+...
T Consensus 193 svR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 193 SVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHhHHHHHHHHHHHcc
Confidence 45678888887766554
No 469
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=48.45 E-value=70 Score=21.43 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=12.9
Q ss_pred HHHHHHHHHhhcCCCCCC-chHH
Q 037620 202 EEAYSVFKRMSRKPGTEP-TVST 223 (330)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~-~~~~ 223 (330)
+++.+.+.++....|+.| ++..
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil~ 28 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNILC 28 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHHH
Confidence 455666666666666666 4443
No 470
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=48.31 E-value=1.4e+02 Score=23.69 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=13.9
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHH
Q 037620 84 GIMINAHCSAKRYDEAVELFREME 107 (330)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~ 107 (330)
..++..+.+.+....|..+.+.+.
T Consensus 86 ~~iL~~lL~~~~~~~a~~i~~~y~ 109 (258)
T PF07064_consen 86 HHILRHLLRRNLDEEALEIASKYR 109 (258)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhc
Confidence 445555555566666666665554
No 471
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=48.04 E-value=1.3e+02 Score=25.58 Aligned_cols=60 Identities=22% Similarity=0.185 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHhC--CCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHH
Q 037620 46 KSYTILLEGWGQQKNLLSMNEVYREMKDD--GFEPDV-VSYGIMINAHCSAKRYDEAVELFREM 106 (330)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~ 106 (330)
.+.-.|++...-.|+.+...+.++.+.+. |..|.- .| .-+.-+|.-.+++.+|.+.|-..
T Consensus 236 fsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VT-Y~VGFayLmmrryadai~~F~ni 298 (525)
T KOG3677|consen 236 FSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVT-YQVGFAYLMMRRYADAIRVFLNI 298 (525)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEe-eehhHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666666554 222221 22 22444555556666666666554
No 472
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=47.74 E-value=1.5e+02 Score=23.95 Aligned_cols=114 Identities=10% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCC
Q 037620 156 VVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNA 235 (330)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (330)
++....+.++.......+..+. ........+..+...|++..|++++....+ -...+..+-..-.-..
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~------~l~~l~~~~c~~~L~~ 171 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ------LLEELKGYSCVRHLSS 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------HHHhcccchHHHHHhH
Q ss_pred CHHHHHHHHHHHHhCCC-----CccHHHHHHHHHHHhccCChhHHHHHHHH
Q 037620 236 QVDMAMRIWDEMKARGV-----LPVMHMYSTLINSLCHEDKLDDACKYFQE 281 (330)
Q Consensus 236 ~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 281 (330)
++++-....+++.+..+ ..|+..|..+..+|.-.|+...+.+-+..
T Consensus 172 ~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 172 QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
No 473
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=47.42 E-value=2.5e+02 Score=26.54 Aligned_cols=84 Identities=11% Similarity=0.097 Sum_probs=43.5
Q ss_pred hHHHHHHHHHH-HcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC------------CchHHHHHHHHHHHh
Q 037620 167 NDAYRMMDEMR-KCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTE------------PTVSTYEIVVRMFCY 233 (330)
Q Consensus 167 ~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~~~~~~~l~~~~~~ 233 (330)
++..+.++.+. ..++..+......+.. ...|+...|+.++++.....+-. .+...+..++.. ..
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~a-L~ 257 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDA-LA 257 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHH-HH
Confidence 44555555543 3556556655555443 34688888888877655311111 111122233332 23
Q ss_pred CCCHHHHHHHHHHHHhCCCC
Q 037620 234 NAQVDMAMRIWDEMKARGVL 253 (330)
Q Consensus 234 ~~~~~~a~~~~~~~~~~~~~ 253 (330)
.++...++.+++++...|..
T Consensus 258 ~~d~~~~l~~~~~l~~~g~~ 277 (830)
T PRK07003 258 AGDGPEILAVADEMALRSLS 277 (830)
T ss_pred cCCHHHHHHHHHHHHHhCCC
Confidence 35666666666666665554
No 474
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=47.35 E-value=90 Score=21.34 Aligned_cols=45 Identities=18% Similarity=0.191 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCchHHHHHHHHHH
Q 037620 273 DDACKYFQEMLDIGIRPP-GQLFSNLKQALRDEGMEETAVVLAQKI 317 (330)
Q Consensus 273 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 317 (330)
+.+..+|+.|...|+-.. +..|......+...|++++|.++++.-
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 389999999998877554 556777888889999999999999753
No 475
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.20 E-value=78 Score=20.59 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=13.3
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHh
Q 037620 119 CTLINGLGSEKRLSEALQFFGQSKK 143 (330)
Q Consensus 119 ~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (330)
..|.-.|++.|+.+.|.+-|+.-..
T Consensus 76 AhLGlLys~~G~~e~a~~eFetEKa 100 (121)
T COG4259 76 AHLGLLYSNSGKDEQAVREFETEKA 100 (121)
T ss_pred HHHHHHHhhcCChHHHHHHHHHhhh
Confidence 3344455566666666655554443
No 476
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.54 E-value=2.7e+02 Score=26.62 Aligned_cols=129 Identities=11% Similarity=0.041 Sum_probs=70.2
Q ss_pred HhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHH
Q 037620 55 WGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEA 134 (330)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 134 (330)
+...|+++.|++.-.++ -+..+|..|.....+.|+.+-|+..|++... |..|--.|.-.|+.++.
T Consensus 653 aLe~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL 717 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKL 717 (1202)
T ss_pred ehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHH
Confidence 34556666665544332 2566777777777777777777777766543 33333456667777776
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 135 LQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
.++...+..+. |..+ ......-.|+.++-.++++.. |.. +..|.. ...+|.-++|.++.++...
T Consensus 718 ~Km~~iae~r~---D~~~---~~qnalYl~dv~ervkIl~n~---g~~--~laylt----a~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 718 SKMMKIAEIRN---DATG---QFQNALYLGDVKERVKILENG---GQL--PLAYLT----AAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHHHhhh---hhHH---HHHHHHHhccHHHHHHHHHhc---Ccc--cHHHHH----HhhcCcHHHHHHHHHhhcc
Confidence 66665554331 2111 111112245666555555432 211 112221 2356777888888888765
No 477
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=45.92 E-value=1.8e+02 Score=24.53 Aligned_cols=52 Identities=6% Similarity=-0.012 Sum_probs=27.2
Q ss_pred HHHccCChHHHHHHHHHHhhCCCCCChHH----HHHHHHHHh--hccChHHHHHHHHH
Q 037620 19 TLCKSRHVERAQEVFDKMKKRRFDPDIKS----YTILLEGWG--QQKNLLSMNEVYRE 70 (330)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~--~~~~~~~a~~~~~~ 70 (330)
.+...+++..|.++|+.+.++..+|+... |..+..+|. ..-++++|.+.++.
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 44556677777777777776644443332 222223322 23455566666654
No 478
>PRK09857 putative transposase; Provisional
Probab=45.69 E-value=1.6e+02 Score=23.80 Aligned_cols=65 Identities=11% Similarity=0.022 Sum_probs=33.4
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCc
Q 037620 119 CTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184 (330)
Q Consensus 119 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 184 (330)
..++....+.++.++..++++.+.+. .+......-++..-+.+.|.-+++.++..+|...|+..+
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 34444444455555555555555443 222223333444555555555666777777777766543
No 479
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=44.72 E-value=40 Score=16.55 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHH
Q 037620 272 LDDACKYFQEMLDIGIRPPGQLFSN 296 (330)
Q Consensus 272 ~~~a~~~~~~~~~~~~~~~~~~~~~ 296 (330)
++.|..+|++.+.. .|+..+|..
T Consensus 3 ~dRAR~IyeR~v~~--hp~~k~Wik 25 (32)
T PF02184_consen 3 FDRARSIYERFVLV--HPEVKNWIK 25 (32)
T ss_pred HHHHHHHHHHHHHh--CCCchHHHH
Confidence 45555666665542 355555543
No 480
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=44.72 E-value=3.4e+02 Score=27.19 Aligned_cols=156 Identities=13% Similarity=0.062 Sum_probs=92.5
Q ss_pred HhccCcHHHHHH------HHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHH-------HHcCCCCcHHHHHHH
Q 037620 125 LGSEKRLSEALQ------FFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEM-------RKCGIGPNTRTYDIV 191 (330)
Q Consensus 125 ~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~l 191 (330)
....|.+.++.+ ++......-.++....|..+...+-+.++.++|...-... ....-+-+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 344555665555 4443222223445567788888888899999888765442 112222234456666
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcC------CCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-----CC--CccHHH
Q 037620 192 LHHLIKAGRTEEAYSVFKRMSRK------PGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR-----GV--LPVMHM 258 (330)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~ 258 (330)
...+...++...|...+.+.... ...+|...+++.+-..+...++++.|.++.+.+.+. |. ..+..+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 55556666777777666665431 123334444455544455558888888888877653 21 235567
Q ss_pred HHHHHHHHhccCChhHHHHHHH
Q 037620 259 YSTLINSLCHEDKLDDACKYFQ 280 (330)
Q Consensus 259 ~~~l~~~~~~~~~~~~a~~~~~ 280 (330)
+..+.+.+...+++..|+...+
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHHHh
Confidence 7788888888888877665444
No 481
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=44.44 E-value=1e+02 Score=21.13 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCchHHHHHHHH
Q 037620 274 DACKYFQEMLDIGIRPP-GQLFSNLKQALRDEGMEETAVVLAQ 315 (330)
Q Consensus 274 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 315 (330)
+..++|..|..+++-.. +..|......+...|++.+|.++++
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35666777766665443 3344455556666777777777665
No 482
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=43.85 E-value=1.1e+02 Score=21.39 Aligned_cols=66 Identities=5% Similarity=0.003 Sum_probs=32.0
Q ss_pred CChhhHHHHHHHHHhhCC---hhHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 148 PEAPTYNAVVGAYCWSMR---INDAYRMMDEMRKCGIG-PNTRTYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
++..+--.+..++.++.+ ..+.+.+++.+.+...+ -......-|.-++.+.++++.+..+++.+.+
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 344444444445554433 33445566665542111 1122233344455666666666666666654
No 483
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=43.54 E-value=1.2e+02 Score=21.52 Aligned_cols=79 Identities=16% Similarity=0.236 Sum_probs=34.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcC-----CCCChHHHHHHHHHHhccCc-HHHHHHHHHHHHhcCCCCChhhHHHH
Q 037620 83 YGIMINAHCSAKRYDEAVELFREMEATN-----CKPSPHIFCTLINGLGSEKR-LSEALQFFGQSKKRGFEPEAPTYNAV 156 (330)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (330)
.+.++.-....+++...+.+++.+.... -..+...|..++.+.....- --.+..+|..+.+.+.+.+..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3555555555566666666665552111 01223344444444433332 22233344444443444444444444
Q ss_pred HHHHH
Q 037620 157 VGAYC 161 (330)
Q Consensus 157 ~~~~~ 161 (330)
+.++.
T Consensus 122 i~~~l 126 (145)
T PF13762_consen 122 IKAAL 126 (145)
T ss_pred HHHHH
Confidence 44433
No 484
>PRK09462 fur ferric uptake regulator; Provisional
Probab=43.45 E-value=1.2e+02 Score=21.46 Aligned_cols=60 Identities=18% Similarity=0.104 Sum_probs=31.7
Q ss_pred HHhcCCCCChhhHHHHHHHHHhh-CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCH
Q 037620 141 SKKRGFEPEAPTYNAVVGAYCWS-MRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRT 201 (330)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (330)
+.+.|+..+.. -..++..+... +..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 8 l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34445443332 22334444433 35666777777777666555555555555555555543
No 485
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=43.40 E-value=3.2e+02 Score=26.62 Aligned_cols=29 Identities=17% Similarity=0.378 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHhhC--ChhHHHHHHHHHHHc
Q 037620 151 PTYNAVVGAYCWSM--RINDAYRMMDEMRKC 179 (330)
Q Consensus 151 ~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~ 179 (330)
.-...++.+|.+.+ ++++|+.....+.+.
T Consensus 813 ~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 813 KYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 34456677777776 677777777777654
No 486
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=43.24 E-value=2.8e+02 Score=25.86 Aligned_cols=85 Identities=12% Similarity=0.012 Sum_probs=48.1
Q ss_pred hHHHHHHHHHH-HcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC--CC----------CchHHHHHHHHHHHh
Q 037620 167 NDAYRMMDEMR-KCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPG--TE----------PTVSTYEIVVRMFCY 233 (330)
Q Consensus 167 ~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~----------~~~~~~~~l~~~~~~ 233 (330)
++....+.... +.|+..+......++... .|+...+..+++++..... +. .+......++.++.
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~- 257 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII- 257 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH-
Confidence 44444454443 456766777766666543 6888888888877654111 11 11112233344333
Q ss_pred CCCHHHHHHHHHHHHhCCCCc
Q 037620 234 NAQVDMAMRIWDEMKARGVLP 254 (330)
Q Consensus 234 ~~~~~~a~~~~~~~~~~~~~~ 254 (330)
.++...++.+++++...|..+
T Consensus 258 ~~d~~~al~~l~~L~~~G~d~ 278 (709)
T PRK08691 258 NQDGAALLAKAQEMAACAVGF 278 (709)
T ss_pred cCCHHHHHHHHHHHHHhCCCH
Confidence 367777777777777776653
No 487
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=42.97 E-value=2.1e+02 Score=24.43 Aligned_cols=100 Identities=19% Similarity=0.242 Sum_probs=58.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC------CCCCCc-----hHHHHHHHHHHHhCCCHHHHHHHHHHHHh--C
Q 037620 184 NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRK------PGTEPT-----VSTYEIVVRMFCYNAQVDMAMRIWDEMKA--R 250 (330)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~ 250 (330)
+......++.++....+..+..+..+..... .+..|- -.+...|++..+-.|++..|+++++.+.- .
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~ 153 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKK 153 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccc
Confidence 3344444555566666666655555542210 111111 12335667778888899998888876532 1
Q ss_pred C----C-CccHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 037620 251 G----V-LPVMHMYSTLINSLCHEDKLDDACKYFQEML 283 (330)
Q Consensus 251 ~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (330)
+ + .-...++..+.-+|.-.+++.+|.+.|...+
T Consensus 154 ~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 154 GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 1123456667778888888888888888776
No 488
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=42.26 E-value=3.3e+02 Score=26.38 Aligned_cols=63 Identities=10% Similarity=0.080 Sum_probs=33.1
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHh-CCCCccHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 037620 220 TVSTYEIVVRMFCYNAQVDMAMRIWDEMKA-RGVLPVMHMYSTLINSLCHEDKLDDACKYFQEML 283 (330)
Q Consensus 220 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (330)
|..++..-...+...|++..|.+++.++.+ .+-.++...|-.++..+...| |.....+++.+.
T Consensus 1230 dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg-w~H~~t~~~~~~ 1293 (1304)
T KOG1114|consen 1230 DSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG-WNHLATFVKNWM 1293 (1304)
T ss_pred CchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC-chHhHHHHhhhe
Confidence 334444444455556666666666666554 344455555555555555554 334444444443
No 489
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.20 E-value=2.9e+02 Score=25.68 Aligned_cols=84 Identities=7% Similarity=0.043 Sum_probs=44.0
Q ss_pred hHHHHHHHHH-HHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCC------------chHHHHHHHHHHHh
Q 037620 167 NDAYRMMDEM-RKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEP------------TVSTYEIVVRMFCY 233 (330)
Q Consensus 167 ~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~ 233 (330)
++....+..+ .+.|+..+......++.. ..|+...|..+++++....+-.. +......++.+..
T Consensus 180 eEI~k~L~~Il~kEgI~id~eAL~~IA~~--S~GdLRdALnLLDQaIayg~g~IT~edV~~lLG~~d~e~IfdLldAI~- 256 (702)
T PRK14960 180 DEITKHLGAILEKEQIAADQDAIWQIAES--AQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLGLIDRTIIYDLILAVH- 256 (702)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhccCCHHHHHHHHHHHH-
Confidence 3444444443 345666666666655543 46888888888877554111111 1112223333332
Q ss_pred CCCHHHHHHHHHHHHhCCCC
Q 037620 234 NAQVDMAMRIWDEMKARGVL 253 (330)
Q Consensus 234 ~~~~~~a~~~~~~~~~~~~~ 253 (330)
.++...+..+++++.+.|..
T Consensus 257 k~d~~~al~~L~el~~~g~d 276 (702)
T PRK14960 257 QNQREKVSQLLLQFRYQALD 276 (702)
T ss_pred hcCHHHHHHHHHHHHHhCCC
Confidence 25566666666666665554
No 490
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=42.01 E-value=1.6e+02 Score=22.83 Aligned_cols=39 Identities=13% Similarity=-0.035 Sum_probs=17.0
Q ss_pred HHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 037620 52 LEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAH 90 (330)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (330)
+..+-+.++++++.+.+.++...+...+..--+.+..+|
T Consensus 8 Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 8 AKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 334444555555555555555554444444444333333
No 491
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=42.00 E-value=2.4e+02 Score=24.81 Aligned_cols=68 Identities=13% Similarity=0.159 Sum_probs=45.6
Q ss_pred CCCChhhHHHHHHHHHccCChHHHHHHHHHHhhC-CCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhC
Q 037620 6 LKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKR-RFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDD 74 (330)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (330)
++.|+..|...+..+-+.+.+.+.-.+|..|+.. +..|+...+.+.= -+-..-+++.|..+|...++.
T Consensus 101 f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~w-efe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 101 FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKW-EFEINLNIESARALFLRGLRF 169 (568)
T ss_pred cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhh-HHhhccchHHHHHHHHHHhhc
Confidence 4558888999998888888899999999999873 3444444443321 122233367777777766665
No 492
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=41.65 E-value=1e+02 Score=20.29 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=30.6
Q ss_pred HHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhcc--ChHHHHHHHHHHHhCC
Q 037620 14 NRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQK--NLLSMNEVYREMKDDG 75 (330)
Q Consensus 14 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~ 75 (330)
..++..|...|+.++|...+.++... .-.......++..+...+ .-+....++..+...+
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~ 67 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRK 67 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcC
Confidence 45666777778888888888776331 111223333444443331 2233445555555554
No 493
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=41.43 E-value=1.2e+02 Score=25.98 Aligned_cols=112 Identities=16% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcc-----
Q 037620 195 LIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHE----- 269 (330)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 269 (330)
+...|++.+|+..|+.+ .+...+.......+.+++.+++....+. .....+..-.+.
T Consensus 214 ~~t~gKF~eA~~~Fr~i-----------L~~i~l~vv~~~~E~~e~~eli~icrEY-------ilgl~iEl~Rr~l~~~~ 275 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSI-----------LHSIPLLVVESREEEDEAKELIEICREY-------ILGLSIELERRELPKDP 275 (422)
T ss_dssp HHHTT-HHHHHHHHHHH-----------HHHHHC--BSSCHHHHHHHHHHHHHHHH-------HHHHHHHHHHCTS-TTT
T ss_pred HHhcCCHHHHHHHHHHH-----------HHHhheeeecCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhccccc
Q ss_pred -CChhHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCCC
Q 037620 270 -DKLDDACKYFQEMLDIGIRPP--GQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTP 324 (330)
Q Consensus 270 -~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 324 (330)
.+....+++.--+-.-.+.|. .-++...+..+.+.+++..|..+.+++.+.+.++
T Consensus 276 ~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 276 VEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred hhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
No 494
>PRK12798 chemotaxis protein; Reviewed
Probab=41.25 E-value=2.3e+02 Score=24.27 Aligned_cols=80 Identities=14% Similarity=0.110 Sum_probs=40.0
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHH-HhccCcHHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhhCChh
Q 037620 93 AKRYDEAVELFREMEATNCKPSPHIFCTLING-LGSEKRLSEALQFFGQSKKRGFEPEA----PTYNAVVGAYCWSMRIN 167 (330)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~ 167 (330)
.|+..++.+.+..+.....++....+-.|+.+ .....+...|+++|+...-. .|.. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 45666666666666555555555555555543 23344566666666655432 2222 22222333445556655
Q ss_pred HHHHHHH
Q 037620 168 DAYRMMD 174 (330)
Q Consensus 168 ~a~~~~~ 174 (330)
++..+-.
T Consensus 203 rf~~la~ 209 (421)
T PRK12798 203 KFEALAR 209 (421)
T ss_pred HHHHHHH
Confidence 5544433
No 495
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.07 E-value=2.9e+02 Score=25.37 Aligned_cols=84 Identities=8% Similarity=0.105 Sum_probs=44.0
Q ss_pred HHHHHHHHH-HHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCc------------hHHHHHHHHHHHhC
Q 037620 168 DAYRMMDEM-RKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPT------------VSTYEIVVRMFCYN 234 (330)
Q Consensus 168 ~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~ 234 (330)
+....+... .+.|+..+......++. ...|+...++.++++.....+...+ ......++.++ ..
T Consensus 187 ei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL-~~ 263 (618)
T PRK14951 187 TVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDAL-AQ 263 (618)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHH-Hc
Confidence 334444433 34566666666666655 3457888888887765431111111 11222333333 33
Q ss_pred CCHHHHHHHHHHHHhCCCCc
Q 037620 235 AQVDMAMRIWDEMKARGVLP 254 (330)
Q Consensus 235 ~~~~~a~~~~~~~~~~~~~~ 254 (330)
|+...++.+++++.+.|..|
T Consensus 264 ~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 264 GDGRTVVETADELRLNGLSA 283 (618)
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 56666777777666666553
No 496
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=40.79 E-value=1.4e+02 Score=21.85 Aligned_cols=109 Identities=12% Similarity=0.201 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 134 ALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
..+++..+.+.|.-.|...-.+.+..-.+.| ..-..+..++...|+ +..+....+..+......+.|..++.....
T Consensus 54 Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkGi--~~~~Ie~aL~~~~~~~~~~~a~~~~~kk~~ 129 (174)
T COG2137 54 IEEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKGI--DDEIIEEALELIDEEDEQERARKVLRKKFK 129 (174)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcCC--CHHHHHHHHhccchHHHHHHHHHHHHHHhC
Confidence 3444444555555444444444444444444 334455666666664 444555555555555555666666665544
Q ss_pred CCCCCCchHHHHHHHHHHHhCC-CHHHHHHHHHH
Q 037620 214 KPGTEPTVSTYEIVVRMFCYNA-QVDMAMRIWDE 246 (330)
Q Consensus 214 ~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~ 246 (330)
..+.+++..-..-+.+.+...| .++.+..++..
T Consensus 130 ~~~~~~~~~~k~Ki~r~L~~rGFs~~~i~~~l~~ 163 (174)
T COG2137 130 RENKPPDKKEKAKIQRFLLRRGFSYEVIKEALNE 163 (174)
T ss_pred ccccCcchhHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3333444333334444444443 33344444433
No 497
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=40.45 E-value=1.6e+02 Score=22.13 Aligned_cols=24 Identities=0% Similarity=-0.172 Sum_probs=13.3
Q ss_pred HHHHHHhhccChHHHHHHHHHHHh
Q 037620 50 ILLEGWGQQKNLLSMNEVYREMKD 73 (330)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~ 73 (330)
...-.....|++++|..-++++.+
T Consensus 34 ~~aI~~~H~~~~eeA~~~l~~a~~ 57 (204)
T COG2178 34 GEAIFLLHRGDFEEAEKKLKKASE 57 (204)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 333344556667666666665543
No 498
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.89 E-value=2.6e+02 Score=24.57 Aligned_cols=87 Identities=11% Similarity=0.186 Sum_probs=46.2
Q ss_pred hHHHHHHHHHH-HcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCch------------HHHHHHHHHHHh
Q 037620 167 NDAYRMMDEMR-KCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTV------------STYEIVVRMFCY 233 (330)
Q Consensus 167 ~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------~~~~~l~~~~~~ 233 (330)
++....+.... ..|+..+......++.. ..|+...+...++.+....+...+. .....++.+ ..
T Consensus 179 ~el~~~L~~i~~~egi~i~~eal~~Ia~~--s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~~~~~~~i~~li~s-i~ 255 (472)
T PRK14962 179 ELIIKRLQEVAEAEGIEIDREALSFIAKR--ASGGLRDALTMLEQVWKFSEGKITLETVHEALGLIPIEVVRDYINA-IF 255 (472)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHH-HH
Confidence 34444454443 35666666666665553 3578888888887754311111111 111222222 34
Q ss_pred CCCHHHHHHHHHHHHhCCCCccH
Q 037620 234 NAQVDMAMRIWDEMKARGVLPVM 256 (330)
Q Consensus 234 ~~~~~~a~~~~~~~~~~~~~~~~ 256 (330)
.++++.|..++.++...|..|..
T Consensus 256 ~~d~~~Al~~l~~ll~~Gedp~~ 278 (472)
T PRK14962 256 NGDVKRVFTVLDDVYYSGKDYEV 278 (472)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHH
Confidence 46777777777777766666543
No 499
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=39.32 E-value=2.8e+02 Score=24.71 Aligned_cols=22 Identities=18% Similarity=0.450 Sum_probs=13.6
Q ss_pred cCChhHHHHHHHHHHhcCCCCC
Q 037620 269 EDKLDDACKYFQEMLDIGIRPP 290 (330)
Q Consensus 269 ~~~~~~a~~~~~~~~~~~~~~~ 290 (330)
.+|...++..++++.+.|..|.
T Consensus 258 ~~d~~~~~~~~~~l~~~G~~~~ 279 (515)
T COG2812 258 KGDAKEALRLINELIEEGKDPE 279 (515)
T ss_pred ccCHHHHHHHHHHHHHhCcCHH
Confidence 4666666666666666665443
No 500
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=38.88 E-value=3e+02 Score=24.90 Aligned_cols=198 Identities=9% Similarity=0.047 Sum_probs=100.9
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLIN 123 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (330)
....+..|++.+. .=+.+...+++.++.. . . ...+..++++....|......-+.+.+....+ ++...-..+..
T Consensus 309 ~~~~f~~lv~~lR-~~~~e~l~~l~~~~~~-~-~--~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~-~~~ea~~~~~~ 382 (574)
T smart00638 309 AAAKFLRLVRLLR-TLSEEQLEQLWRQLYE-K-K--KKARRIFLDAVAQAGTPPALKFIKQWIKNKKI-TPLEAAQLLAV 382 (574)
T ss_pred hHHHHHHHHHHHH-hCCHHHHHHHHHHHHh-C-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC-CHHHHHHHHHH
Confidence 4556666766553 4456677777777754 1 1 56777888888888886666666555555443 32333333333
Q ss_pred HHhcc-CcHHHHHHHHHHHHhc-CCCCC-------hhhHHHHHHHHHhhCCh------hHHHHHHHHHHHcCC-CCcHHH
Q 037620 124 GLGSE-KRLSEALQFFGQSKKR-GFEPE-------APTYNAVVGAYCWSMRI------NDAYRMMDEMRKCGI-GPNTRT 187 (330)
Q Consensus 124 ~~~~~-~~~~~a~~~~~~~~~~-~~~~~-------~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~-~~~~~~ 187 (330)
..... .--.+..+.+..+.+. ...+. ..++..++.-++..... ++....+........ .-+..-
T Consensus 383 ~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 462 (574)
T smart00638 383 LPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEE 462 (574)
T ss_pred HHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchh
Confidence 32222 2233344444444332 23333 24566667655554432 334444433322111 113334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhC--CCHHHHHHHHHHHHh
Q 037620 188 YDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYN--AQVDMAMRIWDEMKA 249 (330)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~ 249 (330)
-...+.++...|.......+..-+. .....+...-...+.++.+. ...+.+..++-.+..
T Consensus 463 ~~~~LkaLGN~g~~~~i~~l~~~l~--~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~ 524 (574)
T smart00638 463 IQLYLKALGNAGHPSSIKVLEPYLE--GAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYL 524 (574)
T ss_pred eeeHHHhhhccCChhHHHHHHHhcC--CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHc
Confidence 4566778888888666554444443 12233333334555555533 356666666555443
Done!