Query 037620
Match_columns 330
No_of_seqs 681 out of 1399
Neff 12.1
Searched_HMMs 29240
Date Mon Mar 25 03:53:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037620.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037620hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 5.1E-35 1.7E-39 246.1 24.1 197 2-198 17-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 3.9E-34 1.3E-38 240.8 25.6 204 29-233 9-222 (501)
3 2xpi_A Anaphase-promoting comp 100.0 2E-31 6.8E-36 232.4 36.7 312 5-323 195-582 (597)
4 2xpi_A Anaphase-promoting comp 100.0 3E-31 1E-35 231.3 34.6 311 6-322 146-547 (597)
5 1w3b_A UDP-N-acetylglucosamine 100.0 2.8E-27 9.6E-32 195.4 37.9 307 7-322 64-370 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1.7E-26 5.7E-31 190.8 36.5 306 8-322 31-336 (388)
7 2y4t_A DNAJ homolog subfamily 100.0 9.8E-26 3.3E-30 189.8 35.9 308 7-323 23-361 (450)
8 3ieg_A DNAJ homolog subfamily 99.9 4.9E-23 1.7E-27 167.9 36.7 306 9-323 2-338 (359)
9 2y4t_A DNAJ homolog subfamily 99.9 3.3E-23 1.1E-27 174.4 33.4 303 7-316 57-405 (450)
10 3hym_B Cell division cycle pro 99.9 6.9E-23 2.4E-27 165.2 31.5 297 5-308 17-322 (330)
11 2gw1_A Mitochondrial precursor 99.9 2.3E-22 7.8E-27 172.0 31.4 303 10-322 6-403 (514)
12 2gw1_A Mitochondrial precursor 99.9 3.4E-22 1.2E-26 171.0 30.9 309 7-322 36-446 (514)
13 3hym_B Cell division cycle pro 99.9 7.4E-22 2.5E-26 159.1 30.6 275 41-322 18-301 (330)
14 1fch_A Peroxisomal targeting s 99.9 3.8E-22 1.3E-26 163.4 26.5 292 20-317 35-356 (368)
15 3ieg_A DNAJ homolog subfamily 99.9 1E-20 3.5E-25 154.1 33.7 291 7-303 34-352 (359)
16 3fp2_A TPR repeat-containing p 99.9 1.8E-20 6E-25 161.3 34.3 309 7-323 56-494 (537)
17 4eqf_A PEX5-related protein; a 99.9 2.3E-21 7.8E-26 158.7 24.8 267 44-316 64-352 (365)
18 3fp2_A TPR repeat-containing p 99.9 2.2E-20 7.6E-25 160.6 31.0 302 10-321 25-408 (537)
19 1fch_A Peroxisomal targeting s 99.9 1.6E-20 5.3E-25 153.8 27.4 269 9-283 63-357 (368)
20 3cv0_A Peroxisome targeting si 99.9 1.1E-20 3.7E-25 152.1 25.7 277 10-315 21-310 (327)
21 3cv0_A Peroxisome targeting si 99.9 9.5E-21 3.3E-25 152.4 25.3 250 45-323 21-272 (327)
22 4eqf_A PEX5-related protein; a 99.9 6.4E-21 2.2E-25 156.0 24.6 267 9-281 64-352 (365)
23 3mkr_A Coatomer subunit epsilo 99.9 1.2E-19 4.2E-24 143.1 26.5 275 17-313 6-287 (291)
24 3mkr_A Coatomer subunit epsilo 99.9 1.3E-19 4.6E-24 142.9 25.0 255 52-323 6-267 (291)
25 3spa_A Mtrpol, DNA-directed RN 99.8 1.5E-20 5.2E-25 163.9 12.3 150 10-164 127-286 (1134)
26 1b89_A Protein (clathrin heavy 99.8 4.7E-20 1.6E-24 149.1 12.1 268 8-314 30-305 (449)
27 3spa_A Mtrpol, DNA-directed RN 99.8 1.3E-20 4.5E-25 164.3 8.9 150 80-235 127-286 (1134)
28 2xm6_A Protein corresponding t 99.8 1.3E-15 4.5E-20 129.4 38.1 243 58-322 164-434 (490)
29 2pl2_A Hypothetical conserved 99.8 6.9E-18 2.4E-22 127.4 21.4 199 7-211 2-211 (217)
30 2xm6_A Protein corresponding t 99.8 3.5E-15 1.2E-19 126.8 40.0 223 9-250 38-288 (490)
31 3uq3_A Heat shock protein STI1 99.8 1.4E-17 4.6E-22 129.3 23.1 224 46-284 6-235 (258)
32 3uq3_A Heat shock protein STI1 99.8 2.3E-17 7.9E-22 128.0 23.9 227 80-321 5-237 (258)
33 1b89_A Protein (clathrin heavy 99.8 2.9E-19 9.9E-24 144.5 13.0 249 22-314 15-263 (449)
34 2pl2_A Hypothetical conserved 99.8 1.6E-17 5.4E-22 125.4 21.8 210 42-282 2-211 (217)
35 3u4t_A TPR repeat-containing p 99.8 6.7E-17 2.3E-21 126.5 25.2 238 10-251 3-251 (272)
36 3u4t_A TPR repeat-containing p 99.8 1.4E-16 4.6E-21 124.7 24.8 230 86-322 9-252 (272)
37 1xnf_A Lipoprotein NLPI; TPR, 99.8 4.4E-17 1.5E-21 127.7 21.8 247 57-314 17-269 (275)
38 4g1t_A Interferon-induced prot 99.8 1.2E-15 4E-20 129.2 32.1 310 7-322 48-403 (472)
39 1xnf_A Lipoprotein NLPI; TPR, 99.8 4E-17 1.4E-21 128.0 20.0 246 21-279 16-269 (275)
40 2h6f_A Protein farnesyltransfe 99.8 3E-16 1E-20 127.9 25.1 228 47-282 99-344 (382)
41 2h6f_A Protein farnesyltransfe 99.8 3.2E-16 1.1E-20 127.7 25.2 246 10-264 97-361 (382)
42 1ouv_A Conserved hypothetical 99.8 4.2E-15 1.4E-19 116.4 30.3 224 44-286 5-252 (273)
43 2ooe_A Cleavage stimulation fa 99.8 1.7E-14 5.8E-19 123.8 36.7 167 149-320 271-454 (530)
44 1ouv_A Conserved hypothetical 99.8 5.9E-15 2E-19 115.5 30.6 224 9-251 5-252 (273)
45 2ho1_A Type 4 fimbrial biogene 99.8 1.1E-15 3.8E-20 118.2 25.7 201 80-285 37-238 (252)
46 2ho1_A Type 4 fimbrial biogene 99.8 1.6E-15 5.4E-20 117.3 26.5 202 45-251 37-239 (252)
47 4g1t_A Interferon-induced prot 99.8 1.6E-15 5.5E-20 128.3 28.1 308 9-322 93-461 (472)
48 2vq2_A PILW, putative fimbrial 99.8 1.3E-15 4.4E-20 115.5 24.7 203 79-285 7-211 (225)
49 2q7f_A YRRB protein; TPR, prot 99.8 1.9E-16 6.6E-21 121.7 19.9 196 84-285 27-222 (243)
50 2q7f_A YRRB protein; TPR, prot 99.8 2.5E-16 8.6E-21 121.0 20.2 201 45-251 23-223 (243)
51 2vq2_A PILW, putative fimbrial 99.8 1.7E-15 5.7E-20 114.9 24.5 199 10-211 8-208 (225)
52 3sf4_A G-protein-signaling mod 99.7 2.2E-16 7.4E-21 130.8 18.0 300 7-307 6-363 (406)
53 3sf4_A G-protein-signaling mod 99.7 5.7E-16 2E-20 128.3 20.3 278 42-320 6-336 (406)
54 4a1s_A PINS, partner of inscut 99.7 2.1E-16 7.1E-21 131.3 17.3 275 46-321 49-373 (411)
55 3ro2_A PINS homolog, G-protein 99.7 4.9E-16 1.7E-20 125.2 17.6 136 186-321 184-333 (338)
56 4a1s_A PINS, partner of inscut 99.7 2.6E-16 9E-21 130.7 16.2 275 10-285 48-372 (411)
57 2ond_A Cleavage stimulation fa 99.7 7.4E-14 2.5E-18 111.2 28.6 234 45-285 8-270 (308)
58 3ro2_A PINS homolog, G-protein 99.7 9.6E-16 3.3E-20 123.4 17.8 275 10-285 5-332 (338)
59 2ond_A Cleavage stimulation fa 99.7 1.2E-13 4.1E-18 110.0 27.5 239 10-252 8-272 (308)
60 3ulq_A Response regulator aspa 99.7 1.9E-14 6.4E-19 118.4 23.0 299 20-322 22-370 (383)
61 4abn_A Tetratricopeptide repea 99.7 5.4E-15 1.8E-19 124.8 19.7 212 96-314 84-315 (474)
62 1xi4_A Clathrin heavy chain; a 99.7 2.4E-13 8.4E-18 123.1 30.2 254 14-317 1053-1306(1630)
63 3vtx_A MAMA; tetratricopeptide 99.7 3.9E-14 1.3E-18 103.9 20.8 166 9-178 4-169 (184)
64 4abn_A Tetratricopeptide repea 99.7 1.1E-14 3.9E-19 122.8 19.9 213 61-281 84-317 (474)
65 3nf1_A KLC 1, kinesin light ch 99.7 9.5E-16 3.3E-20 122.2 11.8 247 44-320 26-307 (311)
66 3vtx_A MAMA; tetratricopeptide 99.6 1E-13 3.5E-18 101.7 21.4 166 44-213 4-169 (184)
67 3nf1_A KLC 1, kinesin light ch 99.6 3.2E-15 1.1E-19 119.2 13.1 172 7-178 24-223 (311)
68 1xi4_A Clathrin heavy chain; a 99.6 2.6E-12 8.7E-17 116.6 32.1 263 11-312 1106-1376(1630)
69 3q15_A PSP28, response regulat 99.6 3.9E-13 1.3E-17 110.3 24.1 313 6-320 6-365 (378)
70 1hz4_A MALT regulatory protein 99.6 2.8E-12 9.6E-17 105.0 28.3 272 13-284 17-321 (373)
71 3e4b_A ALGK; tetratricopeptide 99.6 6.9E-14 2.4E-18 117.3 18.6 284 15-322 8-353 (452)
72 1hz4_A MALT regulatory protein 99.6 1.3E-12 4.4E-17 107.0 25.7 273 48-320 17-322 (373)
73 3e4b_A ALGK; tetratricopeptide 99.6 1.5E-12 5.1E-17 109.2 25.3 188 117-321 178-388 (452)
74 3ulq_A Response regulator aspa 99.6 1.4E-13 4.6E-18 113.3 18.4 231 51-284 109-367 (383)
75 2ooe_A Cleavage stimulation fa 99.6 1.2E-11 4E-16 106.2 30.4 308 9-322 120-494 (530)
76 3as5_A MAMA; tetratricopeptide 99.6 9.6E-13 3.3E-17 96.3 19.4 163 12-178 10-172 (186)
77 4gyw_A UDP-N-acetylglucosamine 99.5 5.6E-13 1.9E-17 117.1 19.6 167 8-178 7-173 (723)
78 3as5_A MAMA; tetratricopeptide 99.5 2.1E-12 7.2E-17 94.4 19.5 162 47-212 10-171 (186)
79 4i17_A Hypothetical protein; T 99.5 2.9E-12 1E-16 97.3 20.6 196 7-213 4-208 (228)
80 4gyw_A UDP-N-acetylglucosamine 99.5 8.8E-13 3E-17 115.8 19.6 168 42-213 6-173 (723)
81 4i17_A Hypothetical protein; T 99.5 1.1E-11 3.9E-16 94.0 21.9 100 44-144 6-105 (228)
82 3edt_B KLC 2, kinesin light ch 99.5 9.4E-13 3.2E-17 103.2 14.6 229 91-320 12-281 (283)
83 3q15_A PSP28, response regulat 99.5 1.1E-11 3.8E-16 101.7 21.4 230 51-284 107-364 (378)
84 3edt_B KLC 2, kinesin light ch 99.5 8.7E-13 3E-17 103.4 14.1 228 56-284 12-280 (283)
85 3mv2_B Coatomer subunit epsilo 99.4 3.2E-10 1.1E-14 88.2 24.9 244 18-286 21-283 (310)
86 3mv2_B Coatomer subunit epsilo 99.4 2.9E-10 1E-14 88.4 23.1 246 53-323 21-285 (310)
87 3qky_A Outer membrane assembly 99.4 6.9E-11 2.4E-15 91.7 19.2 101 9-110 14-127 (261)
88 3qky_A Outer membrane assembly 99.4 1.4E-10 5E-15 89.8 19.4 188 78-286 13-225 (261)
89 2fo7_A Synthetic consensus TPR 99.4 9.1E-11 3.1E-15 80.8 16.3 130 12-144 3-132 (136)
90 3urz_A Uncharacterized protein 99.4 1.2E-10 4.1E-15 87.0 18.1 124 86-213 60-185 (208)
91 1qqe_A Vesicular transport pro 99.4 7.4E-11 2.5E-15 93.1 17.7 211 25-250 32-269 (292)
92 1qqe_A Vesicular transport pro 99.4 1.3E-10 4.5E-15 91.6 19.0 237 28-284 3-268 (292)
93 2fo7_A Synthetic consensus TPR 99.3 1.4E-10 4.8E-15 79.8 16.8 130 47-179 3-132 (136)
94 3urz_A Uncharacterized protein 99.3 1.1E-10 3.7E-15 87.2 16.8 175 10-191 4-196 (208)
95 2pzi_A Probable serine/threoni 99.3 1.1E-10 3.8E-15 102.9 18.8 173 56-236 402-583 (681)
96 4e6h_A MRNA 3'-END-processing 99.3 1.5E-08 5E-13 88.4 31.4 117 7-124 63-194 (679)
97 2pzi_A Probable serine/threoni 99.3 1.3E-10 4.5E-15 102.4 18.5 174 21-200 402-583 (681)
98 4e6h_A MRNA 3'-END-processing 99.3 3.2E-08 1.1E-12 86.3 32.4 171 150-322 343-535 (679)
99 3rjv_A Putative SEL1 repeat pr 99.3 2E-09 7E-14 80.5 21.0 28 81-108 19-46 (212)
100 3dra_A Protein farnesyltransfe 99.3 2.4E-08 8.1E-13 78.4 27.7 222 23-249 46-286 (306)
101 2r5s_A Uncharacterized protein 99.3 1.5E-10 5.3E-15 83.9 14.1 164 11-178 7-172 (176)
102 3rjv_A Putative SEL1 repeat pr 99.3 1.2E-09 4.2E-14 81.7 19.2 176 98-286 4-198 (212)
103 3qou_A Protein YBBN; thioredox 99.3 4.5E-10 1.5E-14 88.3 17.5 167 112-283 114-282 (287)
104 3dra_A Protein farnesyltransfe 99.3 1.6E-08 5.3E-13 79.4 26.0 221 58-284 46-286 (306)
105 4ga2_A E3 SUMO-protein ligase 99.3 7.2E-11 2.5E-15 83.2 11.7 121 55-178 7-128 (150)
106 2yhc_A BAMD, UPF0169 lipoprote 99.3 2.2E-09 7.6E-14 81.1 20.7 192 114-325 3-218 (225)
107 4ga2_A E3 SUMO-protein ligase 99.3 4.4E-11 1.5E-15 84.3 9.8 146 16-165 3-149 (150)
108 2yhc_A BAMD, UPF0169 lipoprote 99.2 2E-09 6.9E-14 81.3 19.5 185 9-213 3-212 (225)
109 3qou_A Protein YBBN; thioredox 99.2 4.3E-10 1.5E-14 88.4 16.3 167 42-212 114-282 (287)
110 2r5s_A Uncharacterized protein 99.2 3.8E-10 1.3E-14 81.9 14.7 157 86-246 12-169 (176)
111 2vsy_A XCC0866; transferase, g 99.2 9.6E-10 3.3E-14 95.1 18.3 155 23-181 2-159 (568)
112 2ifu_A Gamma-SNAP; membrane fu 99.2 9.1E-10 3.1E-14 87.5 16.0 124 88-212 44-182 (307)
113 2vsy_A XCC0866; transferase, g 99.2 1.4E-09 4.8E-14 94.1 18.4 164 128-297 2-168 (568)
114 2ifu_A Gamma-SNAP; membrane fu 99.1 3E-09 1E-13 84.5 16.5 218 22-242 3-253 (307)
115 2uy1_A Cleavage stimulation fa 99.1 6.2E-07 2.1E-11 75.8 30.8 298 7-319 12-412 (493)
116 1hh8_A P67PHOX, NCF-2, neutrop 99.1 8.3E-09 2.9E-13 77.1 17.6 128 12-145 8-151 (213)
117 3u3w_A Transcriptional activat 99.1 2.4E-07 8.3E-12 72.9 25.8 91 87-177 82-182 (293)
118 3q7a_A Farnesyltransferase alp 99.1 3.9E-07 1.3E-11 72.4 26.6 182 15-201 59-258 (349)
119 1hh8_A P67PHOX, NCF-2, neutrop 99.1 1.3E-08 4.3E-13 76.1 17.5 128 47-180 8-151 (213)
120 3u3w_A Transcriptional activat 99.1 1.7E-07 5.9E-12 73.8 23.4 162 157-318 82-264 (293)
121 2qfc_A PLCR protein; TPR, HTH, 99.1 7.8E-08 2.7E-12 75.8 21.0 167 117-283 77-264 (293)
122 3q7a_A Farnesyltransferase alp 99.0 3.6E-07 1.2E-11 72.6 24.2 224 55-284 64-330 (349)
123 2c2l_A CHIP, carboxy terminus 99.0 3.3E-09 1.1E-13 83.1 12.5 99 44-144 3-101 (281)
124 4gco_A Protein STI-1; structur 99.0 1.2E-08 4E-13 69.3 13.7 95 48-144 16-110 (126)
125 3gyz_A Chaperone protein IPGC; 99.0 3.3E-09 1.1E-13 74.4 11.1 98 45-144 36-133 (151)
126 4gco_A Protein STI-1; structur 99.0 1.3E-08 4.4E-13 69.1 13.8 116 6-124 8-124 (126)
127 2qfc_A PLCR protein; TPR, HTH, 99.0 1.1E-07 3.9E-12 74.8 21.2 168 151-318 76-264 (293)
128 1a17_A Serine/threonine protei 99.0 2.3E-08 7.8E-13 71.4 15.8 126 47-175 15-142 (166)
129 1a17_A Serine/threonine protei 99.0 2.1E-08 7E-13 71.6 15.3 131 10-143 13-145 (166)
130 2lni_A Stress-induced-phosphop 99.0 2.3E-08 7.8E-13 68.4 14.3 98 45-144 16-113 (133)
131 2lni_A Stress-induced-phosphop 99.0 2.1E-08 7.3E-13 68.6 14.1 121 6-129 12-132 (133)
132 1na0_A Designed protein CTPR3; 99.0 3E-08 1E-12 66.8 14.3 94 48-143 12-105 (125)
133 1na0_A Designed protein CTPR3; 99.0 2.2E-08 7.7E-13 67.5 13.6 115 10-127 9-123 (125)
134 3gyz_A Chaperone protein IPGC; 99.0 1.1E-08 3.8E-13 71.6 12.2 99 185-286 36-134 (151)
135 2vyi_A SGTA protein; chaperone 99.0 1.8E-08 6.2E-13 68.6 13.1 96 47-144 14-109 (131)
136 2c2l_A CHIP, carboxy terminus 99.0 4.5E-09 1.5E-13 82.3 11.1 195 79-284 3-198 (281)
137 2e2e_A Formate-dependent nitri 99.0 7.1E-09 2.4E-13 75.1 11.2 121 21-144 21-144 (177)
138 2vyi_A SGTA protein; chaperone 99.0 1.4E-08 4.7E-13 69.2 12.0 122 7-131 9-130 (131)
139 4f3v_A ESX-1 secretion system 98.9 8.4E-08 2.9E-12 73.7 16.7 188 92-286 18-238 (282)
140 3gw4_A Uncharacterized protein 98.9 1.8E-08 6.1E-13 74.6 12.3 24 153-176 110-133 (203)
141 2vgx_A Chaperone SYCD; alterna 98.9 1.1E-08 3.7E-13 71.7 10.4 99 44-144 20-118 (148)
142 2e2e_A Formate-dependent nitri 98.9 2.7E-08 9.2E-13 72.0 12.6 118 93-213 23-143 (177)
143 3gw4_A Uncharacterized protein 98.9 3E-08 1E-12 73.3 13.2 156 92-248 4-174 (203)
144 1p5q_A FKBP52, FK506-binding p 98.9 5.3E-08 1.8E-12 78.3 15.2 122 46-169 148-283 (336)
145 4f3v_A ESX-1 secretion system 98.9 2.3E-07 8E-12 71.2 17.8 190 127-323 18-240 (282)
146 2vgx_A Chaperone SYCD; alterna 98.9 1.7E-08 5.9E-13 70.7 10.7 98 79-178 20-117 (148)
147 1p5q_A FKBP52, FK506-binding p 98.9 5.7E-08 2E-12 78.1 14.8 131 9-142 146-292 (336)
148 2fbn_A 70 kDa peptidylprolyl i 98.9 6.6E-09 2.3E-13 76.8 7.5 148 19-170 13-176 (198)
149 3upv_A Heat shock protein STI1 98.8 1.3E-07 4.5E-12 64.1 13.0 93 48-142 7-99 (126)
150 2kck_A TPR repeat; tetratricop 98.8 1.1E-07 3.6E-12 62.8 12.1 102 221-324 6-110 (112)
151 1elw_A TPR1-domain of HOP; HOP 98.8 2.5E-07 8.7E-12 61.5 14.1 97 11-109 5-101 (118)
152 1elw_A TPR1-domain of HOP; HOP 98.8 2.7E-07 9.3E-12 61.3 14.2 98 45-144 4-101 (118)
153 2xcb_A PCRH, regulatory protei 98.8 6.8E-08 2.3E-12 67.1 11.3 97 46-144 19-115 (142)
154 3upv_A Heat shock protein STI1 98.8 2.3E-07 7.8E-12 62.8 13.5 98 80-179 4-101 (126)
155 2kck_A TPR repeat; tetratricop 98.8 1.3E-07 4.5E-12 62.3 12.0 96 47-144 8-106 (112)
156 2xcb_A PCRH, regulatory protei 98.8 6.9E-08 2.4E-12 67.1 10.9 100 9-110 17-116 (142)
157 3dss_A Geranylgeranyl transfer 98.8 2.6E-05 8.9E-10 61.7 27.0 185 96-286 90-305 (331)
158 3dss_A Geranylgeranyl transfer 98.8 2.4E-05 8.3E-10 61.9 25.7 217 97-322 47-306 (331)
159 1elr_A TPR2A-domain of HOP; HO 98.8 1.2E-07 4.1E-12 64.5 10.8 95 48-143 7-107 (131)
160 4gcn_A Protein STI-1; structur 98.8 2.2E-07 7.6E-12 63.1 12.0 59 83-142 11-69 (127)
161 2dba_A Smooth muscle cell asso 98.8 5.9E-07 2E-11 62.5 14.6 98 44-144 27-128 (148)
162 2dba_A Smooth muscle cell asso 98.8 7.4E-07 2.5E-11 62.0 15.1 115 7-125 25-143 (148)
163 2fbn_A 70 kDa peptidylprolyl i 98.7 2.7E-07 9.1E-12 68.1 13.2 131 10-143 38-185 (198)
164 4gcn_A Protein STI-1; structur 98.7 1.4E-07 4.8E-12 64.1 10.5 106 186-295 9-120 (127)
165 3q49_B STIP1 homology and U bo 98.7 4.4E-07 1.5E-11 62.3 13.0 97 44-142 8-104 (137)
166 3sz7_A HSC70 cochaperone (SGT) 98.7 3.9E-07 1.3E-11 65.0 12.9 97 46-144 12-108 (164)
167 3q49_B STIP1 homology and U bo 98.7 5.1E-07 1.8E-11 62.0 13.1 100 183-285 7-106 (137)
168 3sz7_A HSC70 cochaperone (SGT) 98.7 6.4E-07 2.2E-11 63.8 13.9 100 79-180 10-109 (164)
169 2uy1_A Cleavage stimulation fa 98.7 2.8E-05 9.4E-10 65.8 25.7 124 152-284 288-412 (493)
170 4b4t_Q 26S proteasome regulato 98.7 2.4E-06 8.2E-11 71.1 19.2 196 17-212 11-243 (434)
171 1hxi_A PEX5, peroxisome target 98.7 2.8E-07 9.7E-12 61.9 10.9 97 224-322 20-116 (121)
172 4b4t_Q 26S proteasome regulato 98.7 3.3E-06 1.1E-10 70.3 19.4 198 52-249 11-244 (434)
173 1elr_A TPR2A-domain of HOP; HO 98.7 3.3E-07 1.1E-11 62.2 10.7 98 81-179 5-108 (131)
174 1hxi_A PEX5, peroxisome target 98.7 4.1E-07 1.4E-11 61.1 10.7 87 54-142 26-112 (121)
175 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 1.6E-06 5.4E-11 72.8 14.5 87 116-204 318-404 (457)
176 1wao_1 Serine/threonine protei 98.6 1.8E-06 6E-11 72.8 14.3 120 52-174 13-134 (477)
177 1wao_1 Serine/threonine protei 98.6 4.8E-07 1.6E-11 76.3 10.8 127 13-142 9-137 (477)
178 2xev_A YBGF; tetratricopeptide 98.6 2.6E-06 8.9E-11 57.7 12.8 59 84-143 43-104 (129)
179 2xev_A YBGF; tetratricopeptide 98.5 3.8E-06 1.3E-10 56.9 13.5 103 12-117 4-112 (129)
180 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 1.4E-06 4.6E-11 73.2 13.2 152 23-177 247-413 (457)
181 3ro3_A PINS homolog, G-protein 98.5 1.1E-06 3.6E-11 62.1 10.3 24 188-211 52-75 (164)
182 1ihg_A Cyclophilin 40; ppiase 98.5 2.1E-06 7.3E-11 69.8 12.9 96 48-144 226-336 (370)
183 3k9i_A BH0479 protein; putativ 98.5 3.8E-07 1.3E-11 60.9 7.1 60 82-142 29-88 (117)
184 3rkv_A Putative peptidylprolyl 98.5 2.7E-06 9.4E-11 60.3 12.0 97 47-144 13-126 (162)
185 1ihg_A Cyclophilin 40; ppiase 98.5 2.1E-06 7.1E-11 69.8 12.5 124 11-136 224-362 (370)
186 3ro3_A PINS homolog, G-protein 98.5 1.4E-06 4.8E-11 61.5 10.2 94 48-141 12-115 (164)
187 3rkv_A Putative peptidylprolyl 98.5 3.7E-06 1.3E-10 59.6 12.3 99 80-179 11-126 (162)
188 3k9i_A BH0479 protein; putativ 98.5 4.1E-07 1.4E-11 60.7 6.8 88 22-110 2-91 (117)
189 2if4_A ATFKBP42; FKBP-like, al 98.4 1.3E-06 4.5E-11 70.1 10.3 146 47-213 181-327 (338)
190 2if4_A ATFKBP42; FKBP-like, al 98.4 1E-06 3.5E-11 70.8 8.5 152 151-324 180-332 (338)
191 1dce_A Protein (RAB geranylger 98.4 7.7E-05 2.6E-09 64.2 20.3 172 97-274 46-244 (567)
192 1dce_A Protein (RAB geranylger 98.4 5E-05 1.7E-09 65.3 18.6 175 24-203 43-244 (567)
193 1klx_A Cysteine rich protein B 98.3 3.1E-05 1.1E-09 53.1 13.9 110 25-145 10-127 (138)
194 2hr2_A Hypothetical protein; a 98.3 1.1E-05 3.9E-10 56.0 11.4 94 49-143 15-130 (159)
195 1klx_A Cysteine rich protein B 98.3 1.7E-05 5.7E-10 54.5 11.9 111 59-180 9-127 (138)
196 2hr2_A Hypothetical protein; a 98.3 1.9E-05 6.4E-10 54.9 11.3 95 82-177 13-129 (159)
197 3n71_A Histone lysine methyltr 98.2 6.6E-06 2.3E-10 69.1 10.2 124 55-178 319-463 (490)
198 2l6j_A TPR repeat-containing p 98.2 1.1E-06 3.9E-11 57.7 4.6 92 220-314 3-101 (111)
199 3n71_A Histone lysine methyltr 98.2 5.8E-06 2E-10 69.4 9.7 126 19-144 318-464 (490)
200 2l6j_A TPR repeat-containing p 98.2 1.4E-05 4.7E-10 52.3 9.1 63 81-144 5-67 (111)
201 1na3_A Designed protein CTPR2; 98.1 4.8E-05 1.7E-09 47.6 10.2 56 86-142 15-70 (91)
202 1na3_A Designed protein CTPR2; 98.1 3.5E-05 1.2E-09 48.2 9.4 80 45-126 9-88 (91)
203 2kat_A Uncharacterized protein 98.1 2.2E-05 7.5E-10 51.9 8.7 78 64-143 4-81 (115)
204 2kat_A Uncharacterized protein 98.1 3.1E-05 1E-09 51.2 9.5 77 29-107 4-80 (115)
205 1zu2_A Mitochondrial import re 98.1 2E-05 6.9E-10 54.6 8.5 90 60-153 17-127 (158)
206 1zu2_A Mitochondrial import re 98.1 1.9E-05 6.5E-10 54.8 8.2 99 91-193 13-132 (158)
207 3ma5_A Tetratricopeptide repea 97.9 6E-05 2E-09 48.4 7.7 64 220-284 6-69 (100)
208 3ma5_A Tetratricopeptide repea 97.9 0.0001 3.5E-09 47.2 8.5 62 80-142 7-68 (100)
209 3ly7_A Transcriptional activat 97.7 0.0016 5.6E-08 51.9 14.1 75 217-295 273-347 (372)
210 2kc7_A BFR218_protein; tetratr 97.7 0.00014 4.8E-09 46.3 6.7 59 227-286 6-65 (99)
211 3ly7_A Transcriptional activat 97.6 0.0021 7.2E-08 51.3 13.9 64 184-250 276-339 (372)
212 3qww_A SET and MYND domain-con 97.5 0.00065 2.2E-08 56.2 9.2 88 197-284 310-410 (433)
213 3qww_A SET and MYND domain-con 97.4 0.00044 1.5E-08 57.2 7.9 61 116-176 341-408 (433)
214 3qwp_A SET and MYND domain-con 97.4 0.0017 5.8E-08 53.7 11.1 94 191-284 293-399 (429)
215 3bee_A Putative YFRE protein; 97.4 0.0022 7.7E-08 40.2 9.2 68 218-286 3-73 (93)
216 3qwp_A SET and MYND domain-con 97.4 0.0012 4E-08 54.7 10.0 87 91-177 298-398 (429)
217 3mkq_A Coatomer beta'-subunit; 97.3 0.01 3.5E-07 53.6 16.6 153 90-282 609-762 (814)
218 3bee_A Putative YFRE protein; 97.3 0.0054 1.9E-07 38.4 10.6 65 184-250 5-72 (93)
219 2kc7_A BFR218_protein; tetratr 97.3 0.003 1E-07 39.9 9.7 55 54-109 9-64 (99)
220 3mkq_A Coatomer beta'-subunit; 97.2 0.0046 1.6E-07 55.8 13.1 159 123-315 607-773 (814)
221 3u64_A Protein TP_0956; tetrat 97.2 0.05 1.7E-06 41.8 16.0 107 201-318 179-296 (301)
222 1pc2_A Mitochondria fission pr 97.1 0.0029 1E-07 43.4 8.1 83 200-285 13-100 (152)
223 1pc2_A Mitochondria fission pr 97.1 0.019 6.4E-07 39.4 11.6 82 61-144 14-100 (152)
224 2v5f_A Prolyl 4-hydroxylase su 97.1 0.0091 3.1E-07 38.3 9.7 25 83-107 49-73 (104)
225 4h7y_A Dual specificity protei 96.9 0.011 3.9E-07 40.0 9.3 113 183-299 11-136 (161)
226 2v5f_A Prolyl 4-hydroxylase su 96.9 0.0081 2.8E-07 38.5 8.5 68 219-286 3-76 (104)
227 3lvg_A Clathrin heavy chain 1; 96.8 5.5E-07 1.9E-11 73.2 -14.3 222 11-269 55-276 (624)
228 1nzn_A CGI-135 protein, fissio 96.6 0.019 6.4E-07 37.9 8.2 89 195-285 11-103 (126)
229 1wy6_A Hypothetical protein ST 96.5 0.095 3.2E-06 34.9 15.0 61 225-286 95-155 (172)
230 4h7y_A Dual specificity protei 96.5 0.085 2.9E-06 35.9 10.8 101 8-110 11-124 (161)
231 4ady_A RPN2, 26S proteasome re 96.4 0.21 7.3E-06 45.2 16.2 16 197-212 536-551 (963)
232 3mkq_B Coatomer subunit alpha; 96.3 0.16 5.5E-06 35.8 16.0 100 91-211 16-115 (177)
233 3mkq_B Coatomer subunit alpha; 96.3 0.17 5.7E-06 35.7 16.7 128 159-317 14-141 (177)
234 3u64_A Protein TP_0956; tetrat 96.2 0.096 3.3E-06 40.2 11.3 85 61-147 179-272 (301)
235 1wy6_A Hypothetical protein ST 96.1 0.17 5.8E-06 33.8 13.5 148 13-182 8-157 (172)
236 1nzn_A CGI-135 protein, fissio 96.0 0.096 3.3E-06 34.5 9.2 65 79-144 34-103 (126)
237 1qsa_A Protein (soluble lytic 95.7 0.96 3.3E-05 39.3 22.1 118 199-319 228-347 (618)
238 4ady_A RPN2, 26S proteasome re 95.5 1.5 5E-05 40.0 20.3 256 20-284 384-657 (963)
239 4fhn_B Nucleoporin NUP120; pro 95.5 0.89 3.1E-05 42.9 17.0 132 116-249 900-1049(1139)
240 4b4t_P 26S proteasome regulato 95.2 1.1 3.8E-05 37.3 19.2 259 23-282 29-321 (445)
241 4gns_B Protein CSD3, chitin bi 95.2 1.1 3.7E-05 39.9 15.5 128 83-212 251-398 (754)
242 3lvg_A Clathrin heavy chain 1; 95.2 7.6E-05 2.6E-09 61.0 -9.4 88 219-313 197-284 (624)
243 2ff4_A Probable regulatory pro 95.1 0.6 2.1E-05 38.0 13.1 68 226-294 176-248 (388)
244 4gns_B Protein CSD3, chitin bi 94.8 0.3 1E-05 43.3 11.1 125 49-176 252-397 (754)
245 2ff4_A Probable regulatory pro 94.7 0.2 6.9E-06 40.8 9.2 68 119-187 175-247 (388)
246 3ffl_A Anaphase-promoting comp 94.5 0.15 5.1E-06 35.4 6.6 126 187-325 22-156 (167)
247 4b4t_P 26S proteasome regulato 94.3 1.9 6.7E-05 35.8 20.0 256 59-315 30-319 (445)
248 3o48_A Mitochondria fission 1 94.2 0.74 2.5E-05 30.6 9.4 74 216-291 35-111 (134)
249 4fhn_B Nucleoporin NUP120; pro 94.1 2.8 9.5E-05 39.7 16.5 148 155-309 817-989 (1139)
250 1v54_E Cytochrome C oxidase po 93.7 0.76 2.6E-05 28.8 9.7 63 236-299 25-87 (109)
251 1v54_E Cytochrome C oxidase po 93.3 0.88 3E-05 28.5 9.2 47 28-74 28-74 (109)
252 3ffl_A Anaphase-promoting comp 93.3 0.47 1.6E-05 32.9 7.4 56 52-107 27-90 (167)
253 2y69_E Cytochrome C oxidase su 92.4 1.6 5.4E-05 29.0 9.2 65 60-125 68-132 (152)
254 2y69_E Cytochrome C oxidase su 92.4 1.6 5.5E-05 29.0 9.7 62 237-299 69-130 (152)
255 1y8m_A FIS1; mitochondria, unk 92.2 1.8 6.1E-05 29.2 11.2 73 217-291 35-110 (144)
256 1zbp_A Hypothetical protein VP 92.0 2.2 7.7E-05 32.3 10.0 55 124-179 6-60 (273)
257 2uwj_G Type III export protein 90.4 2.1 7.3E-05 26.6 7.8 86 23-119 19-106 (115)
258 4b4t_R RPN7, 26S proteasome re 90.2 4.5 0.00015 33.4 11.4 61 82-142 133-195 (429)
259 2p58_C Putative type III secre 90.1 2.3 7.8E-05 26.6 8.6 86 23-119 20-107 (116)
260 1y8m_A FIS1; mitochondria, unk 89.2 3.7 0.00013 27.7 11.4 68 77-144 36-106 (144)
261 3o48_A Mitochondria fission 1 89.2 3.5 0.00012 27.4 10.1 66 148-213 38-106 (134)
262 4b4t_R RPN7, 26S proteasome re 88.6 9.3 0.00032 31.5 12.8 99 151-249 132-236 (429)
263 3lpz_A GET4 (YOR164C homolog); 87.7 8.9 0.00031 30.3 20.7 139 55-212 65-214 (336)
264 3eiq_C Programmed cell death p 87.6 9.5 0.00033 30.5 14.3 68 187-256 219-288 (358)
265 1zbp_A Hypothetical protein VP 85.9 6.2 0.00021 30.0 8.6 54 90-144 7-60 (273)
266 2wpv_A GET4, UPF0363 protein Y 84.9 12 0.00042 29.2 18.9 85 55-139 63-158 (312)
267 3txn_A 26S proteasome regulato 84.6 15 0.00051 29.9 20.7 232 11-247 20-281 (394)
268 2zu6_B Programmed cell death p 84.6 13 0.00043 29.1 10.4 25 48-72 6-30 (307)
269 3txn_A 26S proteasome regulato 83.2 17 0.00059 29.5 22.1 166 46-212 20-208 (394)
270 3esl_A Checkpoint serine/threo 82.8 11 0.00038 27.1 9.4 77 214-290 70-149 (202)
271 1wdy_A 2-5A-dependent ribonucl 80.7 11 0.00037 28.4 8.8 85 193-279 153-239 (285)
272 1qsa_A Protein (soluble lytic 78.8 33 0.0011 30.0 24.4 22 298-319 388-409 (618)
273 2uwj_G Type III export protein 78.1 10 0.00035 23.7 7.9 77 165-250 21-97 (115)
274 2d2s_A Exocyst complex compone 77.9 19 0.00065 26.8 8.8 22 17-38 25-46 (235)
275 3esl_A Checkpoint serine/threo 77.8 17 0.00059 26.2 10.1 57 198-254 92-148 (202)
276 2wvi_A Mitotic checkpoint seri 77.5 15 0.00052 25.5 7.6 76 215-293 57-133 (164)
277 2p58_C Putative type III secre 77.5 11 0.00036 23.7 8.5 50 194-250 49-98 (116)
278 4b4t_S RPN3, 26S proteasome re 77.5 12 0.00043 31.5 8.3 65 10-74 231-299 (523)
279 2nsz_A Programmed cell death p 75.3 15 0.00051 24.3 7.5 66 187-254 9-76 (129)
280 3lpz_A GET4 (YOR164C homolog); 74.4 30 0.001 27.3 21.1 25 220-244 135-159 (336)
281 1wdy_A 2-5A-dependent ribonucl 73.8 11 0.00038 28.4 7.0 213 14-245 6-240 (285)
282 2ion_A PDCD4, programmed cell 72.9 13 0.00045 25.4 6.3 66 187-254 11-78 (152)
283 1k1a_A B-cell lymphoma 3-encod 72.4 15 0.00052 26.9 7.3 25 17-41 13-37 (241)
284 3hra_A Ankyrin repeat family p 71.9 18 0.0006 25.6 7.4 17 275-291 157-173 (201)
285 3hra_A Ankyrin repeat family p 71.0 14 0.00048 26.1 6.6 18 18-35 10-27 (201)
286 4a1g_A Mitotic checkpoint seri 68.2 26 0.00088 24.0 9.4 50 240-289 84-134 (152)
287 2wpv_A GET4, UPF0363 protein Y 67.2 43 0.0015 26.2 19.7 26 220-245 133-158 (312)
288 4a1g_A Mitotic checkpoint seri 65.8 29 0.001 23.7 9.8 52 203-254 83-134 (152)
289 4ets_A Ferric uptake regulatio 65.0 17 0.00057 25.2 5.6 56 215-271 27-84 (162)
290 2d2s_A Exocyst complex compone 63.7 43 0.0015 24.9 9.2 89 51-142 24-118 (235)
291 1mzb_A Ferric uptake regulatio 63.4 30 0.001 23.0 6.9 57 215-272 12-69 (136)
292 3eu9_A Huntingtin-interacting 63.3 31 0.0011 25.0 7.4 20 298-317 214-233 (240)
293 2w57_A Ferric uptake regulatio 63.2 32 0.0011 23.3 7.0 57 215-272 11-68 (150)
294 3eyy_A Putative iron uptake re 63.0 25 0.00086 23.7 6.1 56 215-272 13-68 (145)
295 2xig_A Ferric uptake regulatio 62.0 34 0.0012 23.2 7.6 44 228-271 33-76 (150)
296 3jxi_A Vanilloid receptor-rela 61.7 4.4 0.00015 30.4 2.4 55 17-71 9-72 (260)
297 3e3v_A Regulatory protein RECX 61.5 39 0.0013 23.7 9.8 50 132-182 50-99 (177)
298 3eiq_C Programmed cell death p 61.1 62 0.0021 25.9 16.5 93 224-317 220-318 (358)
299 2f6m_A Suppressor protein STP2 61.0 17 0.00058 20.6 4.0 50 258-308 4-53 (65)
300 2zu6_B Programmed cell death p 59.3 61 0.0021 25.3 12.8 67 187-255 168-236 (307)
301 3d5l_A Regulatory protein RECX 58.9 51 0.0017 24.2 10.5 51 131-182 92-142 (221)
302 4ets_A Ferric uptake regulatio 58.4 42 0.0014 23.1 7.0 70 238-308 14-86 (162)
303 2ion_A PDCD4, programmed cell 58.4 41 0.0014 22.9 8.0 61 152-213 11-73 (152)
304 2fe3_A Peroxide operon regulat 58.3 39 0.0013 22.7 7.4 43 228-270 28-70 (145)
305 3bu8_A Telomeric repeat-bindin 58.1 52 0.0018 24.0 7.4 50 201-250 88-143 (235)
306 3jxi_A Vanilloid receptor-rela 57.8 8.9 0.0003 28.7 3.5 26 298-323 229-254 (260)
307 3kea_A K1L; tropism, ANK repea 56.5 63 0.0022 24.5 9.8 22 191-212 164-185 (285)
308 3eyy_A Putative iron uptake re 55.5 36 0.0012 22.9 5.9 61 174-237 8-68 (145)
309 3mwm_A ZUR, putative metal upt 55.1 29 0.001 23.2 5.3 47 226-272 18-64 (139)
310 4aez_C MAD3, mitotic spindle c 54.0 63 0.0021 23.8 8.7 74 213-289 109-183 (223)
311 4gq2_M Nucleoporin NUP120; bet 53.9 1E+02 0.0035 28.7 10.2 50 256-305 897-950 (950)
312 4gq2_M Nucleoporin NUP120; bet 53.9 1.4E+02 0.0048 27.8 11.3 88 227-320 816-926 (950)
313 1bpo_A Protein (clathrin); cla 53.6 98 0.0033 25.9 11.4 141 23-176 342-482 (494)
314 2wvi_A Mitotic checkpoint seri 53.2 54 0.0018 22.7 10.0 54 202-255 77-130 (164)
315 2ijq_A Hypothetical protein; s 53.0 54 0.0018 22.7 7.6 51 233-283 44-102 (161)
316 2b7e_A PRE-mRNA processing pro 52.9 25 0.00084 19.5 3.7 29 273-301 3-31 (59)
317 4aez_C MAD3, mitotic spindle c 52.3 67 0.0023 23.6 8.6 53 202-254 131-183 (223)
318 3qil_A Clathrin heavy chain 1; 51.6 19 0.00066 23.4 3.6 52 48-102 35-86 (125)
319 3kea_A K1L; tropism, ANK repea 50.4 42 0.0014 25.5 6.3 145 17-177 35-185 (285)
320 2o03_A Probable zinc uptake re 49.1 34 0.0012 22.5 4.8 45 227-271 16-60 (131)
321 2fu4_A Ferric uptake regulatio 48.3 39 0.0013 19.8 6.9 59 247-306 8-67 (83)
322 2fe3_A Peroxide operon regulat 48.2 59 0.002 21.8 7.4 58 36-94 13-70 (145)
323 3mwm_A ZUR, putative metal upt 48.1 30 0.001 23.1 4.5 46 190-236 18-63 (139)
324 1mzb_A Ferric uptake regulatio 47.0 60 0.002 21.5 6.6 58 36-94 9-67 (136)
325 4b4t_S RPN3, 26S proteasome re 46.9 1.3E+02 0.0046 25.5 11.7 65 186-250 232-299 (523)
326 2w57_A Ferric uptake regulatio 46.8 64 0.0022 21.8 6.9 58 36-94 8-66 (150)
327 2r9g_A AAA ATPase, central reg 46.7 79 0.0027 22.8 9.4 37 57-94 26-62 (204)
328 2nsz_A Programmed cell death p 46.5 60 0.002 21.3 9.4 23 154-176 11-33 (129)
329 3kae_A CDC27, possible protein 46.1 75 0.0026 22.4 9.1 26 186-211 115-140 (242)
330 3aji_A 26S proteasome non-ATPa 45.6 51 0.0017 23.7 5.9 20 17-36 10-29 (231)
331 3eu9_A Huntingtin-interacting 45.5 82 0.0028 22.6 8.9 16 19-34 15-30 (240)
332 2qx5_A Nucleoporin NIC96; mRNA 44.4 1.7E+02 0.0057 25.9 12.7 43 12-56 155-197 (661)
333 1ug3_A EIF4GI, eukaryotic prot 43.8 1.2E+02 0.0041 24.0 10.6 64 13-77 14-78 (339)
334 2ko4_A Mediator of RNA polymer 42.5 38 0.0013 19.9 3.5 32 5-36 31-62 (81)
335 2o03_A Probable zinc uptake re 42.3 58 0.002 21.3 5.2 45 156-200 16-60 (131)
336 3pvs_A Replication-associated 40.1 1.6E+02 0.0054 24.4 13.4 56 127-182 267-327 (447)
337 4g8k_A 2-5A-dependent ribonucl 40.1 1.3E+02 0.0044 23.3 13.6 56 14-78 26-85 (337)
338 2p22_A Suppressor protein STP2 39.1 39 0.0013 23.7 3.9 53 255-308 110-162 (174)
339 2keb_A DNA polymerase subunit 38.8 69 0.0024 19.9 6.2 57 239-297 27-88 (101)
340 2ijq_A Hypothetical protein; s 37.8 99 0.0034 21.3 8.1 49 59-107 46-102 (161)
341 2rg8_A Programmed cell death p 37.7 73 0.0025 22.1 5.2 26 13-38 13-38 (165)
342 3kae_A CDC27, possible protein 37.1 1.1E+02 0.0037 21.6 9.3 60 12-77 34-94 (242)
343 2rfa_A Transient receptor pote 37.0 1.1E+02 0.0039 21.8 7.6 50 17-70 7-59 (232)
344 3qil_A Clathrin heavy chain 1; 36.9 45 0.0015 21.7 3.6 49 85-136 37-85 (125)
345 3l6a_A Eukaryotic translation 36.7 1.6E+02 0.0056 23.6 14.5 73 47-123 14-91 (364)
346 1ug3_A EIF4GI, eukaryotic prot 36.5 1.6E+02 0.0054 23.3 9.7 25 48-72 14-38 (339)
347 1bd8_A P19INK4D CDK4/6 inhibit 36.0 57 0.0019 21.6 4.6 12 22-33 11-22 (156)
348 3t8k_A Uncharacterized protein 35.8 1.1E+02 0.0038 21.3 9.5 93 19-114 12-108 (186)
349 3ctd_A Putative ATPase, AAA fa 35.8 1.3E+02 0.0043 21.9 8.7 54 57-110 47-105 (213)
350 1bd8_A P19INK4D CDK4/6 inhibit 34.8 51 0.0017 21.9 4.2 143 51-209 5-154 (156)
351 2pnn_A Transient receptor pote 34.1 49 0.0017 24.8 4.3 57 15-71 15-80 (273)
352 3lxu_X Tripeptidyl-peptidase 2 33.8 2.4E+02 0.0082 27.4 9.2 50 267-319 1295-1344(1354)
353 1bpo_A Protein (clathrin); cla 33.6 2.1E+02 0.0073 24.0 11.7 142 163-318 342-483 (494)
354 2xig_A Ferric uptake regulatio 33.5 1.1E+02 0.0038 20.6 8.2 61 140-201 17-77 (150)
355 3bge_A Predicted ATPase; struc 33.4 1.3E+02 0.0046 21.6 8.6 22 128-149 20-41 (201)
356 2rg8_A Programmed cell death p 32.5 83 0.0028 21.8 4.8 63 187-253 12-76 (165)
357 3bge_A Predicted ATPase; struc 32.4 1.4E+02 0.0048 21.5 8.6 34 57-90 19-52 (201)
358 1oai_A Nuclear RNA export fact 32.2 37 0.0013 18.7 2.4 23 198-220 33-55 (59)
359 2pnn_A Transient receptor pote 32.1 62 0.0021 24.2 4.6 18 299-316 238-255 (273)
360 3ygs_P Procaspase 9; apoptosis 31.3 93 0.0032 19.1 4.6 64 31-100 25-88 (97)
361 1n11_A Ankyrin; clathrin, BAND 30.9 1.7E+02 0.0058 23.7 7.4 51 15-69 16-68 (437)
362 1k1a_A B-cell lymphoma 3-encod 30.7 1.5E+02 0.0051 21.3 9.1 15 196-210 87-101 (241)
363 3twr_A Tankyrase-2; ankyrin re 30.7 83 0.0028 21.0 4.7 18 17-34 12-29 (165)
364 2f6m_A Suppressor protein STP2 29.3 82 0.0028 17.8 4.7 24 87-110 9-32 (65)
365 2cos_A Serine/threonine protei 29.0 69 0.0024 17.2 2.9 11 307-317 38-48 (54)
366 3lxu_X Tripeptidyl-peptidase 2 28.9 4.2E+02 0.014 25.9 10.0 78 61-142 1265-1343(1354)
367 3pvs_A Replication-associated 28.7 2.5E+02 0.0086 23.2 13.7 52 162-213 267-323 (447)
368 2crb_A Nuclear receptor bindin 27.5 1E+02 0.0035 18.9 3.8 26 11-36 16-41 (97)
369 3ctd_A Putative ATPase, AAA fa 27.2 1.8E+02 0.0062 21.1 9.2 33 128-160 48-80 (213)
370 1wgl_A TOLL-interacting protei 26.7 83 0.0028 17.3 3.2 13 270-282 37-49 (59)
371 2r9g_A AAA ATPase, central reg 26.4 1.8E+02 0.0063 20.9 9.6 17 94-110 28-44 (204)
372 4fke_A Aminopeptidase N; zinc 26.1 4E+02 0.014 24.7 18.7 77 62-143 706-786 (909)
373 3b7b_A Euchromatic histone-lys 26.1 1.8E+02 0.0062 20.8 6.6 17 302-318 218-234 (237)
374 3bqo_A Telomeric repeat-bindin 25.7 90 0.0031 22.4 3.9 45 261-307 122-166 (211)
375 2qx5_A Nucleoporin NIC96; mRNA 25.1 3.6E+02 0.012 23.9 14.6 28 291-318 533-565 (661)
376 1wty_A Hypothetical protein TT 24.8 1.4E+02 0.0048 19.1 6.7 77 200-284 3-80 (119)
377 3r88_A Anthranilate phosphorib 24.8 2.8E+02 0.0094 22.4 7.5 65 9-74 22-88 (377)
378 2dzn_A Probable 26S proteasome 24.5 1.1E+02 0.0038 21.8 4.7 20 17-36 6-25 (228)
379 3mv2_A Coatomer subunit alpha; 23.8 2.7E+02 0.0092 21.9 13.0 29 117-145 209-237 (325)
380 1n11_A Ankyrin; clathrin, BAND 23.8 2.9E+02 0.0099 22.3 9.0 233 50-314 16-265 (437)
381 3t5v_B Nuclear mRNA export pro 23.7 1.8E+02 0.0062 24.2 6.1 27 187-213 178-204 (455)
382 2yru_A Steroid receptor RNA ac 23.5 1.6E+02 0.0053 19.1 5.7 42 67-108 48-89 (118)
383 2etb_A Transient receptor pote 23.4 88 0.003 23.0 4.0 27 16-42 5-31 (256)
384 3ljn_A Hypothetical protein; a 23.4 2.7E+02 0.0092 21.8 8.3 221 49-281 21-266 (364)
385 2etb_A Transient receptor pote 23.0 1.3E+02 0.0044 22.1 4.9 28 52-79 6-33 (256)
386 3t5v_B Nuclear mRNA export pro 23.0 1.7E+02 0.006 24.3 5.8 60 223-282 178-246 (455)
387 3bu8_A Telomeric repeat-bindin 22.9 2.3E+02 0.0078 20.8 12.0 18 25-42 34-51 (235)
388 4g8k_A 2-5A-dependent ribonucl 22.4 2.7E+02 0.0092 21.4 7.8 42 161-209 281-322 (337)
389 3ltj_A Alpharep-4; protein eng 21.9 2.1E+02 0.007 19.9 19.2 170 44-234 27-196 (201)
390 2p22_A Suppressor protein STP2 21.6 2E+02 0.0068 20.2 5.0 46 81-127 112-157 (174)
391 2dzn_A Probable 26S proteasome 20.9 72 0.0025 22.8 3.0 19 53-71 7-25 (228)
392 2rfa_A Transient receptor pote 20.5 2.4E+02 0.0081 20.1 8.7 20 16-35 40-59 (232)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=5.1e-35 Score=246.11 Aligned_cols=197 Identities=14% Similarity=0.214 Sum_probs=176.0
Q ss_pred CCCCCCCChh-hHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccC---------hHHHHHHHHHH
Q 037620 2 DKFGLKQELP-DFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN---------LLSMNEVYREM 71 (330)
Q Consensus 2 ~~~g~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~ 71 (330)
++.+..+++. .++.+|..|++.|++++|+++|++|.+.|+.||..+|++||.+|++.+. +++|.++|++|
T Consensus 17 ~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M 96 (501)
T 4g26_A 17 KKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQM 96 (501)
T ss_dssp -------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHH
T ss_pred HHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHH
Confidence 3455555443 5888999999999999999999999999999999999999999987654 67899999999
Q ss_pred HhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChh
Q 037620 72 KDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAP 151 (330)
Q Consensus 72 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (330)
...|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 97 ~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ 176 (501)
T 4g26_A 97 IVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP 176 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHc
Q 037620 152 TYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKA 198 (330)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (330)
+|++|+.+|++.|++++|.+++++|.+.+..|+..||+.++..|...
T Consensus 177 ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 177 ELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999888753
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3.9e-34 Score=240.77 Aligned_cols=204 Identities=15% Similarity=0.279 Sum_probs=116.8
Q ss_pred HHHHHHHHhhCCCCCCh-HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCc---------HHH
Q 037620 29 AQEVFDKMKKRRFDPDI-KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKR---------YDE 98 (330)
Q Consensus 29 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~~~ 98 (330)
+..+.+.+.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|++||.+|++.+. .++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34444555555544433 34666677777777777777777777777777777777777777765443 455
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHH
Q 037620 99 AVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRK 178 (330)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (330)
|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 56666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh
Q 037620 179 CGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCY 233 (330)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (330)
.|+.||..+|+.||.+|++.|++++|.+++++|.+ .+..|+..||+.++..|+.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666555 4555566666555555544
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-31 Score=232.42 Aligned_cols=312 Identities=7% Similarity=0.023 Sum_probs=227.2
Q ss_pred CCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCC-------------------------------------------
Q 037620 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRF------------------------------------------- 41 (330)
Q Consensus 5 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------------------------------------------- 41 (330)
|.+++..+|+.++..|.+.|++++|+++|+.+.+.+.
T Consensus 195 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 274 (597)
T 2xpi_A 195 GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL 274 (597)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHH
Confidence 5566788999999999999999999999998876431
Q ss_pred ---------------------------CCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC
Q 037620 42 ---------------------------DPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAK 94 (330)
Q Consensus 42 ---------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 94 (330)
+++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 353 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESG 353 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHT
T ss_pred HHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhC
Confidence 1445555666666666666666666666666553 225555666666666666
Q ss_pred cHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHH
Q 037620 95 RYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMD 174 (330)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 174 (330)
++++|.++++++.+.. +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|..+|+
T Consensus 354 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 431 (597)
T 2xpi_A 354 EKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYT 431 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666666543 5567777777788888888888888888777653 3456677888888888888888888888
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----
Q 037620 175 EMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR---- 250 (330)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 250 (330)
++.+.+ +.+..++..++.+|.+.|++++|..+|+++.+. .+.+..+|+.++..|.+.|++++|.++|+++.+.
T Consensus 432 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 432 TAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508 (597)
T ss_dssp HHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 877654 336677778888888888888888888887652 3345677888888888888888888888887665
Q ss_pred CCCcc--HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCC
Q 037620 251 GVLPV--MHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKT 323 (330)
Q Consensus 251 ~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (330)
+..|+ ..+|..++.+|.+.|++++|..+++++.+.+ +.+..+|..+..+|.+.|++++|.+.++++.+..+.
T Consensus 509 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 509 QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 55566 6678888888888888888888888887665 446777888888888888888888888887776543
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-31 Score=231.28 Aligned_cols=311 Identities=13% Similarity=0.043 Sum_probs=231.0
Q ss_pred CCCChhhHHHHHHHHHccCChHHHHHHHHHHhh-C--------------CCCCChHHHHHHHHHHhhccChHHHHHHHHH
Q 037620 6 LKQELPDFNRLIDTLCKSRHVERAQEVFDKMKK-R--------------RFDPDIKSYTILLEGWGQQKNLLSMNEVYRE 70 (330)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~--------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 70 (330)
.++++.+++.++.+|.+.|++++|.++|+++.. . +.+++..+|+.++.+|.+.|++++|.++|++
T Consensus 146 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 225 (597)
T 2xpi_A 146 YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKE 225 (597)
T ss_dssp GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467788888888888888888888888884322 1 2234578888888888888998888888888
Q ss_pred HHhCCCC----------------------------------------------------------------------CCh
Q 037620 71 MKDDGFE----------------------------------------------------------------------PDV 80 (330)
Q Consensus 71 ~~~~~~~----------------------------------------------------------------------~~~ 80 (330)
+.+.+.. ++.
T Consensus 226 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 305 (597)
T 2xpi_A 226 ALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSS 305 (597)
T ss_dssp HHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCH
T ss_pred HHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchH
Confidence 8654321 344
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 037620 81 VSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAY 160 (330)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (330)
.++..++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|.++++++.+.. +.+..+++.++..|
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 383 (597)
T 2xpi_A 306 DLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYY 383 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 555556666666666666666666666554 4455566666666666666666666666665442 44667778888888
Q ss_pred HhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHH
Q 037620 161 CWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMA 240 (330)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 240 (330)
.+.|++++|..+|+++.+.. +.+..+|..++..|.+.|++++|..+|+++.+ ..+.+..+|..++.+|.+.|++++|
T Consensus 384 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR--LFQGTHLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888887753 23567888888888888888888888888776 2344677788888888888888888
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhc----CCCCC--hhhHHHHHHHHHhcCchHHHHHHH
Q 037620 241 MRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDI----GIRPP--GQLFSNLKQALRDEGMEETAVVLA 314 (330)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~ 314 (330)
.++|+++.+.... +..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+++
T Consensus 461 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (597)
T 2xpi_A 461 NEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539 (597)
T ss_dssp HHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8888888876544 6778888888888888888888888888765 55666 678888888888888888888888
Q ss_pred HHHHhcCC
Q 037620 315 QKIDKLRK 322 (330)
Q Consensus 315 ~~~~~~~~ 322 (330)
+++.+.++
T Consensus 540 ~~~~~~~p 547 (597)
T 2xpi_A 540 NQGLLLST 547 (597)
T ss_dssp HHHHHHSS
T ss_pred HHHHHhCC
Confidence 88877654
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.8e-27 Score=195.44 Aligned_cols=307 Identities=11% Similarity=0.050 Sum_probs=249.7
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHH
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIM 86 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (330)
+.+..+|..+...+.+.|++++|+..|+.+.+.. |.+..+|..+..++...|++++|.+.|+++.+.. +.+...+..+
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 141 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDL 141 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4566778888888888888888888888887742 3455678888888888888888888888887764 2345666777
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCh
Q 037620 87 INAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRI 166 (330)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (330)
...+...|++++|.+.|+++.+.. |.+..+|..+..++...|++++|...++++.+.+ +.+...+..+...+...|++
T Consensus 142 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~ 219 (388)
T 1w3b_A 142 GNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIF 219 (388)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCH
Confidence 788888888888888888888765 5667888888888888888888888888888774 44567788888888888999
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Q 037620 167 NDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDE 246 (330)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 246 (330)
++|...+++..... +.+..++..+..++...|++++|...++++.+. .+.+..++..+...+...|++++|...+++
T Consensus 220 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 296 (388)
T 1w3b_A 220 DRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNT 296 (388)
T ss_dssp THHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99998888887754 235778888999999999999999999998872 233566788999999999999999999999
Q ss_pred HHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 247 MKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
+.+... .+..++..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|...++++.+..+
T Consensus 297 al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 297 ALRLCP-THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHhhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 988754 377889999999999999999999999998753 44577888999999999999999999999887543
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.7e-26 Score=190.82 Aligned_cols=306 Identities=16% Similarity=0.086 Sum_probs=267.1
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHH
Q 037620 8 QELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMI 87 (330)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (330)
.+...+..+...+...|++++|...++...+. .|.+..+|..+...+.+.|++++|+..|+++.+.. +.+..+|..+.
T Consensus 31 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 108 (388)
T 1w3b_A 31 DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLA 108 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHH
Confidence 34556777778888999999999999998874 46688899999999999999999999999998874 33567899999
Q ss_pred HHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChh
Q 037620 88 NAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIN 167 (330)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (330)
.++...|++++|.+.|+++.+.+ |.+...+..+...+...|++++|.+.|.++.+.. +.+..+|..+...+...|+++
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 186 (388)
T 1w3b_A 109 AALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIW 186 (388)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999876 6667788889999999999999999999998874 446788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 037620 168 DAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEM 247 (330)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 247 (330)
+|...|+++...+. .+...+..+...+...|++++|...+++.... .+.+..++..+...+...|++++|...++++
T Consensus 187 ~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 263 (388)
T 1w3b_A 187 LAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRA 263 (388)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998653 35778889999999999999999999998762 2335778899999999999999999999999
Q ss_pred HhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 248 KARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
.+.++. +..+|..+..++.+.|++++|...++++.+.. +.+..++..+...+.+.|++++|...++++.+..+
T Consensus 264 l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 336 (388)
T 1w3b_A 264 IELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336 (388)
T ss_dssp HHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT
T ss_pred HhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 987654 67789999999999999999999999999865 56788999999999999999999999999987643
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=9.8e-26 Score=189.83 Aligned_cols=308 Identities=10% Similarity=0.020 Sum_probs=263.5
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHH
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIM 86 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (330)
+.++..+..+...+.+.|++++|+.+|+.+.+. .+.+..+|..+..++...|++++|+..|+++.+.+ +.+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 446677999999999999999999999999884 35678999999999999999999999999999875 4468889999
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCCCCCh---HHHHHH------------HHHHhccCcHHHHHHHHHHHHhcCCCCChh
Q 037620 87 INAHCSAKRYDEAVELFREMEATNCKPSP---HIFCTL------------INGLGSEKRLSEALQFFGQSKKRGFEPEAP 151 (330)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (330)
..++.+.|++++|.+.|+++.+.. +.+. ..+..+ ...+...|++++|...++++.+.. +.+..
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 178 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAE 178 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 999999999999999999999875 4455 566555 445899999999999999998874 55788
Q ss_pred hHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHH----
Q 037620 152 TYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIV---- 227 (330)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l---- 227 (330)
.+..+..+|.+.|++++|...++++.+.. +.+..++..+...|...|++++|...++++... .+.+...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHH
Confidence 89999999999999999999999998764 346889999999999999999999999999862 22334444444
Q ss_pred --------HHHHHhCCCHHHHHHHHHHHHhCCCCcc----HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHH
Q 037620 228 --------VRMFCYNAQVDMAMRIWDEMKARGVLPV----MHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFS 295 (330)
Q Consensus 228 --------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 295 (330)
...+...|++++|...|+++.+.... + ...+..+..++.+.|++++|+..++++.+.. +.+...+.
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~ 333 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 78899999999999999999886433 2 3478888999999999999999999998764 44788999
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHhcCCC
Q 037620 296 NLKQALRDEGMEETAVVLAQKIDKLRKT 323 (330)
Q Consensus 296 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (330)
.+..+|...|++++|...++++.+..+.
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999999886543
No 8
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.94 E-value=4.9e-23 Score=167.94 Aligned_cols=306 Identities=10% Similarity=0.019 Sum_probs=259.1
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMIN 88 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (330)
++..+..+...+...|++++|+..|+.+.+.. |.+..++..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 46678889999999999999999999998853 5578899999999999999999999999999874 337788999999
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCC---CChHHHHHH------------HHHHhccCcHHHHHHHHHHHHhcCCCCChhhH
Q 037620 89 AHCSAKRYDEAVELFREMEATNCK---PSPHIFCTL------------INGLGSEKRLSEALQFFGQSKKRGFEPEAPTY 153 (330)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (330)
++...|++++|...|+++.+.. + .+...+..+ ...+...|++++|.+.++++.+.. +.+...+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 9999999999999999999875 4 455566555 578899999999999999998874 5577889
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHH--------
Q 037620 154 NAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYE-------- 225 (330)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------- 225 (330)
..+...+...|++++|...++.+.... +.+..++..+...+...|++++|...++...+.. +.+...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHH
Confidence 999999999999999999999998864 4477899999999999999999999999988632 22233222
Q ss_pred ----HHHHHHHhCCCHHHHHHHHHHHHhCCCCccH----HHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 037620 226 ----IVVRMFCYNAQVDMAMRIWDEMKARGVLPVM----HMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNL 297 (330)
Q Consensus 226 ----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 297 (330)
.+...+...|++++|...++++.+.... +. ..+..+..++...|++++|...+++..+.. +.+..++..+
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 312 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDR 312 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 3366789999999999999999886543 22 235567789999999999999999999864 4478899999
Q ss_pred HHHHHhcCchHHHHHHHHHHHhcCCC
Q 037620 298 KQALRDEGMEETAVVLAQKIDKLRKT 323 (330)
Q Consensus 298 ~~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (330)
...+...|++++|...+++..+..+.
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999887653
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=3.3e-23 Score=174.40 Aligned_cols=303 Identities=11% Similarity=0.075 Sum_probs=247.4
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCCh---HHH
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDV---VSY 83 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 83 (330)
+.+..+|..+..++...|++++|+..|+.+.+.+ +.+..++..+..++...|++++|.+.|+++.+.. +.+. ..+
T Consensus 57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ 134 (450)
T 2y4t_A 57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQ 134 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHH
Confidence 4568889999999999999999999999999854 4568899999999999999999999999999874 2234 555
Q ss_pred HHH------------HHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChh
Q 037620 84 GIM------------INAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAP 151 (330)
Q Consensus 84 ~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (330)
..+ ...+...|++++|+..|+++.+.. +.+..++..+..+|.+.|++++|.+.++++.+.. +.+..
T Consensus 135 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 212 (450)
T 2y4t_A 135 SQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTE 212 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 555 445889999999999999999876 7788999999999999999999999999998874 55788
Q ss_pred hHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHH------------HHHHHHcCCHHHHHHHHHHhhcCCCCCC
Q 037620 152 TYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIV------------LHHLIKAGRTEEAYSVFKRMSRKPGTEP 219 (330)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 219 (330)
++..+...|...|++++|...++++..... .+...+..+ ...+...|++++|...|+++.+.....+
T Consensus 213 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 291 (450)
T 2y4t_A 213 AFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIA 291 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch
Confidence 999999999999999999999999987642 244444444 7889999999999999999987322212
Q ss_pred c--hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 037620 220 T--VSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNL 297 (330)
Q Consensus 220 ~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 297 (330)
. ..++..+..++.+.|++++|...++++.+.... +...|..+..+|...|++++|...++++++.. +.+...+..+
T Consensus 292 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 369 (450)
T 2y4t_A 292 EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGL 369 (450)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 1 347888999999999999999999999876533 67899999999999999999999999999753 2245555555
Q ss_pred HHH------------HHhcC-----chHHHHHHHHH
Q 037620 298 KQA------------LRDEG-----MEETAVVLAQK 316 (330)
Q Consensus 298 ~~~------------~~~~g-----~~~~a~~~~~~ 316 (330)
..+ |...| +.+++.+.+++
T Consensus 370 ~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 370 EKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 532 33334 55666777765
No 10
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.93 E-value=6.9e-23 Score=165.19 Aligned_cols=297 Identities=10% Similarity=-0.001 Sum_probs=248.5
Q ss_pred CCCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHH
Q 037620 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYG 84 (330)
Q Consensus 5 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (330)
+++.++..+..+...+...|++++|+++|+.+.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+.
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 94 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWF 94 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHH
Confidence 456777888899999999999999999999998853 4566777788888999999999999999999874 44788889
Q ss_pred HHHHHHhccC-cHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhh
Q 037620 85 IMINAHCSAK-RYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWS 163 (330)
Q Consensus 85 ~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (330)
.+...+...| ++++|.+.|++..+.. +.+...+..+..++...|++++|.+.++++.+.. +.+...+..+...+...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 9999999999 9999999999999876 6678889999999999999999999999998874 44567778899999999
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC-------CCCCchHHHHHHHHHHHhCCC
Q 037620 164 MRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKP-------GTEPTVSTYEIVVRMFCYNAQ 236 (330)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~ 236 (330)
|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. ..+....++..+...+...|+
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 99999999999998864 3467889999999999999999999999887521 113345688899999999999
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH-HhcCchH
Q 037620 237 VDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQAL-RDEGMEE 308 (330)
Q Consensus 237 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 308 (330)
+++|...+++..+.... +...+..+..++...|++++|...++++.+.. +.+...+..+..++ ...|+.+
T Consensus 252 ~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 252 YAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 99999999999887544 67789999999999999999999999998654 34677777788777 4555543
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.3e-22 Score=172.04 Aligned_cols=303 Identities=12% Similarity=0.003 Sum_probs=256.0
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINA 89 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (330)
...+......+.+.|++++|+..|+.+.+.. |+..+|..+..++...|++++|+..++++.+.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4567788889999999999999999999864 789999999999999999999999999999875 4467889999999
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCC-------------------------------------------------------
Q 037620 90 HCSAKRYDEAVELFREMEATNCKPS------------------------------------------------------- 114 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~------------------------------------------------------- 114 (330)
+...|++++|...|+++...+ +++
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999987665 211
Q ss_pred ------------------------hHHHHHHHHHHh---ccCcHHHHHHHHHHHHh-----cCC--------CCChhhHH
Q 037620 115 ------------------------PHIFCTLINGLG---SEKRLSEALQFFGQSKK-----RGF--------EPEAPTYN 154 (330)
Q Consensus 115 ------------------------~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~ 154 (330)
...+......+. +.|++++|...++++.+ ..- +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 233333333333 38999999999999987 311 22356778
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhC
Q 037620 155 AVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYN 234 (330)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (330)
.+...+...|++++|...++.+...... ...+..+...+...|++++|...++++... .+.+..++..+...+...
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--CTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--CcCCHHHHHHHHHHHHHh
Confidence 8889999999999999999999987543 888899999999999999999999999873 344567888999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHH
Q 037620 235 AQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLA 314 (330)
Q Consensus 235 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 314 (330)
|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...+
T Consensus 318 ~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999987655 67789999999999999999999999998764 346778889999999999999999999
Q ss_pred HHHHhcCC
Q 037620 315 QKIDKLRK 322 (330)
Q Consensus 315 ~~~~~~~~ 322 (330)
+++.+...
T Consensus 396 ~~a~~~~~ 403 (514)
T 2gw1_A 396 DLAIELEN 403 (514)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 99876544
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.4e-22 Score=170.99 Aligned_cols=309 Identities=12% Similarity=-0.005 Sum_probs=246.3
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCC--------
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEP-------- 78 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------- 78 (330)
.|+...|..+..++.+.|++++|+..++.+.+.. |.+..+|..+..++...|++++|...|+++...+...
T Consensus 36 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 114 (514)
T 2gw1_A 36 KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHH
T ss_pred CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 3788999999999999999999999999998854 5577899999999999999999999999987764210
Q ss_pred ----------------------------------------------------------------------ChHHHHHHHH
Q 037620 79 ----------------------------------------------------------------------DVVSYGIMIN 88 (330)
Q Consensus 79 ----------------------------------------------------------------------~~~~~~~ll~ 88 (330)
+...+.....
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 1222333333
Q ss_pred HHh---ccCcHHHHHHHHHHHHh-----cCC--------CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhh
Q 037620 89 AHC---SAKRYDEAVELFREMEA-----TNC--------KPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPT 152 (330)
Q Consensus 89 ~~~---~~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (330)
.+. +.|++++|..+|+++.+ ... +.+..++..+...+...|++++|...++++.+.. |+...
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~ 272 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNS 272 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHH
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHH
Confidence 333 37999999999999887 310 2345677888899999999999999999998875 33778
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHH
Q 037620 153 YNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFC 232 (330)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (330)
+..+...+...|++++|...++.+.... +.+...+..+...+...|++++|...+++..+. .+.+...+..+...+.
T Consensus 273 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 349 (514)
T 2gw1_A 273 YIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--DPENIFPYIQLACLAY 349 (514)
T ss_dssp HHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--CSSCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ChhhHHHHHHHHHHHH
Confidence 8888999999999999999999988764 336678888899999999999999999998762 2335667888888899
Q ss_pred hCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHh---c
Q 037620 233 YNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIR-PP----GQLFSNLKQALRD---E 304 (330)
Q Consensus 233 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~ 304 (330)
..|++++|...++++.+.... +...+..+...+...|++++|...++++.+.... ++ ...+..+...+.. .
T Consensus 350 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 428 (514)
T 2gw1_A 350 RENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV 428 (514)
T ss_dssp TTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT
T ss_pred HcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc
Confidence 999999999999988876443 5677888888999999999999999988764311 11 3378888888888 8
Q ss_pred CchHHHHHHHHHHHhcCC
Q 037620 305 GMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 305 g~~~~a~~~~~~~~~~~~ 322 (330)
|++++|...++++.+..+
T Consensus 429 ~~~~~A~~~~~~a~~~~~ 446 (514)
T 2gw1_A 429 ENFIEATNLLEKASKLDP 446 (514)
T ss_dssp THHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999988877654
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=7.4e-22 Score=159.15 Aligned_cols=275 Identities=10% Similarity=-0.008 Sum_probs=237.2
Q ss_pred CCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHH
Q 037620 41 FDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCT 120 (330)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (330)
.+.+...+..+...+...|++++|.++|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+..++..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 45567778888899999999999999999998875 4466677778889999999999999999999876 678889999
Q ss_pred HHHHHhccC-cHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcC
Q 037620 121 LINGLGSEK-RLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAG 199 (330)
Q Consensus 121 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (330)
+...+...| ++++|.+.++++.+.. +.+...+..+...+...|++++|...+++..+... .+...+..+...+...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHh
Confidence 999999999 9999999999999875 44677899999999999999999999999988643 35667778999999999
Q ss_pred CHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC--------CCccHHHHHHHHHHHhccCC
Q 037620 200 RTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG--------VLPVMHMYSTLINSLCHEDK 271 (330)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~ 271 (330)
++++|...+++..+. .+.+...+..+...+...|++++|...+++..+.. ......++..+..++...|+
T Consensus 174 ~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 174 NSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp CHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 999999999999873 34567788999999999999999999999987642 13345789999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 272 LDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 272 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
+++|...+++..+.. +.+...+..+...+.+.|++++|...+++..+..+
T Consensus 252 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 252 YAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 999999999999865 44678899999999999999999999999887654
No 14
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.91 E-value=3.8e-22 Score=163.42 Aligned_cols=292 Identities=10% Similarity=0.008 Sum_probs=232.4
Q ss_pred HHccCChHHHHH-HHHHHhhCCC-CC--ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCc
Q 037620 20 LCKSRHVERAQE-VFDKMKKRRF-DP--DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKR 95 (330)
Q Consensus 20 ~~~~~~~~~a~~-~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 95 (330)
+.-.|++++|.+ .++....... .| +...+..+...+...|++++|...|+++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344578888888 8876655321 11 35678889999999999999999999999885 4478889999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHH---------------HHHHH
Q 037620 96 YDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNA---------------VVGAY 160 (330)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~ 160 (330)
+++|...|+++.+.. +.+..++..+..++...|++++|...++++.+... .+...+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999999999886 77889999999999999999999999999988742 22323221 23334
Q ss_pred HhhCChhHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHH
Q 037620 161 CWSMRINDAYRMMDEMRKCGIGP-NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDM 239 (330)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (330)
...|++++|...++++.+..... +..++..+...+...|++++|...++++... .+.+..++..+...+...|++++
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHH
Confidence 48999999999999998864321 5788999999999999999999999998862 34457789999999999999999
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC----------ChhhHHHHHHHHHhcCchHH
Q 037620 240 AMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP----------PGQLFSNLKQALRDEGMEET 309 (330)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~ 309 (330)
|...++++.+.... +...+..+..++.+.|++++|...++++.+..... ...+|..+..++...|++++
T Consensus 270 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 270 AVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 99999999887543 67889999999999999999999999998643111 26789999999999999999
Q ss_pred HHHHHHHH
Q 037620 310 AVVLAQKI 317 (330)
Q Consensus 310 a~~~~~~~ 317 (330)
|..++++.
T Consensus 349 A~~~~~~~ 356 (368)
T 1fch_A 349 YGAADARD 356 (368)
T ss_dssp HHHHHTTC
T ss_pred HHHhHHHH
Confidence 99887643
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=1e-20 Score=154.14 Aligned_cols=291 Identities=11% Similarity=0.060 Sum_probs=237.0
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCC--CChHHHH
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFE--PDVVSYG 84 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~ 84 (330)
+.+...+..+...+...|++++|...++.+.+.. +.+...|..+...+...|++++|...|+++.+.... .+...+.
T Consensus 34 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 112 (359)
T 3ieg_A 34 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAES 112 (359)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHH
Confidence 3457789999999999999999999999998853 447788999999999999999999999999987420 2445554
Q ss_pred HH------------HHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhh
Q 037620 85 IM------------INAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPT 152 (330)
Q Consensus 85 ~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (330)
.+ ...+...|++++|.++++++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...
T Consensus 113 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 190 (359)
T 3ieg_A 113 QLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEA 190 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 44 578889999999999999999876 7788999999999999999999999999999874 567889
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHH------------HHHHHHHHcCCHHHHHHHHHHhhcCCCCCCc
Q 037620 153 YNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYD------------IVLHHLIKAGRTEEAYSVFKRMSRKPGTEPT 220 (330)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 220 (330)
+..+...+...|++++|...++...+.... +...+. .+...+...|++++|...++++.+.....+.
T Consensus 191 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 269 (359)
T 3ieg_A 191 FYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAE 269 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH
Confidence 999999999999999999999999886432 333332 2366788999999999999998873222111
Q ss_pred h--HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 037620 221 V--STYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLK 298 (330)
Q Consensus 221 ~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 298 (330)
. ..+..+..++...|++++|...+++..+.... +..++..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 270 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~ 347 (359)
T 3ieg_A 270 YTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLE 347 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 1 23556788999999999999999999887543 77889999999999999999999999999764 23455555555
Q ss_pred HHHHh
Q 037620 299 QALRD 303 (330)
Q Consensus 299 ~~~~~ 303 (330)
.+...
T Consensus 348 ~~~~~ 352 (359)
T 3ieg_A 348 KAQRL 352 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=1.8e-20 Score=161.28 Aligned_cols=309 Identities=15% Similarity=0.101 Sum_probs=212.9
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhC------------
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDD------------ 74 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------ 74 (330)
|.++..|..+..++.+.|++++|++.|+.+.+.. |.+..++..+..++...|++++|...|+.+...
T Consensus 56 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 134 (537)
T 3fp2_A 56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPML 134 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHH
Confidence 3456777888888888888888888888877743 446677777777787778777777766422100
Q ss_pred --------------------------------------------------------------------------------
Q 037620 75 -------------------------------------------------------------------------------- 74 (330)
Q Consensus 75 -------------------------------------------------------------------------------- 74 (330)
T Consensus 135 ~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 214 (537)
T 3fp2_A 135 ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVA 214 (537)
T ss_dssp HHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHH
Confidence
Q ss_pred ---------------CCCCC--------hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcH
Q 037620 75 ---------------GFEPD--------VVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRL 131 (330)
Q Consensus 75 ---------------~~~~~--------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (330)
...|+ ..++..+...+...|++++|...|+++.+.. |+..++..+...+...|++
T Consensus 215 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCH
Confidence 00111 1134444456666677777777777777654 4467777777777778888
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 037620 132 SEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRM 211 (330)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (330)
++|...+.++.+.. +.+..++..+...+...|++++|...+++...... .+...+..+...+...|++++|...++++
T Consensus 293 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 370 (537)
T 3fp2_A 293 QEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNET 370 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888887777664 34566777777778888888888888887777542 24567777777888888888888888877
Q ss_pred hcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-----ccHHHHHHHHHHHhcc----------CChhHHH
Q 037620 212 SRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL-----PVMHMYSTLINSLCHE----------DKLDDAC 276 (330)
Q Consensus 212 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~----------~~~~~a~ 276 (330)
.+. .+.+...+..+...+...|++++|...++++.+.... .....+......+... |++++|.
T Consensus 371 ~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~ 448 (537)
T 3fp2_A 371 KLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAI 448 (537)
T ss_dssp HHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHH
T ss_pred HHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHH
Confidence 662 2334556777777888888888888888777654211 1122234444556666 8888888
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCC
Q 037620 277 KYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKT 323 (330)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (330)
..++++.+.. +.+...+..+...+.+.|++++|.+.+++..+..+.
T Consensus 449 ~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 449 KLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 8888887654 346677888888899999999999999988876654
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.90 E-value=2.3e-21 Score=158.71 Aligned_cols=267 Identities=9% Similarity=-0.036 Sum_probs=220.5
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLIN 123 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (330)
+...+..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++...|++++|+..|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888999999999999999999999875 4478899999999999999999999999999886 677899999999
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCCCCh----------hhHHHHHHHHHhhCChhHHHHHHHHHHHcCCC-CcHHHHHHHH
Q 037620 124 GLGSEKRLSEALQFFGQSKKRGFEPEA----------PTYNAVVGAYCWSMRINDAYRMMDEMRKCGIG-PNTRTYDIVL 192 (330)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 192 (330)
+|...|++++|...++++.+.. +.+. ..+..+...+...|++++|...++++...... ++..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999998763 1122 22334578899999999999999999986432 1678999999
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCCh
Q 037620 193 HHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKL 272 (330)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 272 (330)
..+...|++++|...+++..+. .+.+..+|..+..+|...|++++|...++++.+.... +..++..+..+|...|++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCH
Confidence 9999999999999999998872 3446778999999999999999999999999887544 578899999999999999
Q ss_pred hHHHHHHHHHHhcCCC-----------CChhhHHHHHHHHHhcCchHHHHHHHHH
Q 037620 273 DDACKYFQEMLDIGIR-----------PPGQLFSNLKQALRDEGMEETAVVLAQK 316 (330)
Q Consensus 273 ~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 316 (330)
++|...++++++.... .+...|..+..++...|+.+.+.++.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999863211 1367889999999999999988887764
No 18
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=2.2e-20 Score=160.63 Aligned_cols=302 Identities=12% Similarity=0.071 Sum_probs=244.0
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINA 89 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (330)
...|..+...+.+.|++++|+..|+.+.+.. |.+..+|..+..++...|++++|++.|+++.+.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4668888999999999999999999999853 5688999999999999999999999999999875 4478889999999
Q ss_pred HhccCcHHHHHHHHHHHHhcCCC-------------------------------------CChH----------------
Q 037620 90 HCSAKRYDEAVELFREMEATNCK-------------------------------------PSPH---------------- 116 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~-------------------------------------~~~~---------------- 116 (330)
+...|++++|...|+.+ ..... |+..
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 99999999999999643 21100 0000
Q ss_pred --------------HHHHHHHHHhc--------cCcHHHHHHHHHHHHhcCCCCCh-------hhHHHHHHHHHhhCChh
Q 037620 117 --------------IFCTLINGLGS--------EKRLSEALQFFGQSKKRGFEPEA-------PTYNAVVGAYCWSMRIN 167 (330)
Q Consensus 117 --------------~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~ 167 (330)
....+...+.. .|++++|..+++++.+.. +.+. .++..+...+...|+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 11222222222 247889999999988764 2232 34666777888899999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 037620 168 DAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEM 247 (330)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 247 (330)
+|...++...... |+...+..+...+...|++++|...++++.+. .+.+..++..+...+...|++++|...++++
T Consensus 261 ~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 261 DAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999864 55788889999999999999999999998862 3346778899999999999999999999999
Q ss_pred HhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcC
Q 037620 248 KARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLR 321 (330)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (330)
.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 337 ~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 337 QSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 887544 56789999999999999999999999999865 4567788899999999999999999999987654
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.89 E-value=1.6e-20 Score=153.82 Aligned_cols=269 Identities=11% Similarity=0.030 Sum_probs=226.4
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMIN 88 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (330)
+...+..+...+...|++++|...|+.+.+.. +.+..+|..+..++...|++++|...|+++.+.. +.+..++..+..
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 140 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAV 140 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 35668889999999999999999999999853 5678899999999999999999999999999875 447889999999
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCCCChHHHHH---------------HHHHHhccCcHHHHHHHHHHHHhcCCCC-Chhh
Q 037620 89 AHCSAKRYDEAVELFREMEATNCKPSPHIFCT---------------LINGLGSEKRLSEALQFFGQSKKRGFEP-EAPT 152 (330)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~ 152 (330)
++...|++++|.+.++++.... +.+...+.. .+..+...|++++|...++++.+..... +..+
T Consensus 141 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 219 (368)
T 1fch_A 141 SFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 219 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHH
Confidence 9999999999999999998875 444433331 2334448999999999999998874221 5788
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHH
Q 037620 153 YNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFC 232 (330)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (330)
+..+...+...|++++|...++++.... +.+..++..+...+...|++++|...++++.+. .+.+..++..+..++.
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~ 296 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCI 296 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH
Confidence 9999999999999999999999998864 346789999999999999999999999998862 3446778899999999
Q ss_pred hCCCHHHHHHHHHHHHhCCCCc----------cHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 037620 233 YNAQVDMAMRIWDEMKARGVLP----------VMHMYSTLINSLCHEDKLDDACKYFQEML 283 (330)
Q Consensus 233 ~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (330)
..|++++|...++++.+..... ...+|..+..++...|++++|..++++.+
T Consensus 297 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 297 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 9999999999999987653221 16789999999999999999999887443
No 20
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.89 E-value=1.1e-20 Score=152.11 Aligned_cols=277 Identities=6% Similarity=-0.009 Sum_probs=139.7
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINA 89 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (330)
...+..+...+...|++++|..+|+.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3445566666666777777777777666532 3355666666666666677777777776666653 3355566666666
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHH-HH-HHHhhCChh
Q 037620 90 HCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAV-VG-AYCWSMRIN 167 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~ 167 (330)
+...|++++|.+.++++.+.. +.+...+..+...+ |+......+ .. .+...|+++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHH
Confidence 666666666666666666543 22333332220000 000000001 11 134444555
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 037620 168 DAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEM 247 (330)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 247 (330)
+|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+..++..+...+...|++++|...++++
T Consensus 156 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 156 ECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555544432 123444455555555555555555555554431 1223444555555555555555555555555
Q ss_pred HhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC-----------ChhhHHHHHHHHHhcCchHHHHHHHH
Q 037620 248 KARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP-----------PGQLFSNLKQALRDEGMEETAVVLAQ 315 (330)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~ 315 (330)
.+.... +...+..+...+...|++++|...++++.+..... +...+..+..++.+.|++++|..+++
T Consensus 233 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 233 LDINPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 544322 34455555555555555555555555554432111 24455555555555666655555554
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.89 E-value=9.5e-21 Score=152.43 Aligned_cols=250 Identities=8% Similarity=-0.007 Sum_probs=180.5
Q ss_pred hHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 037620 45 IKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124 (330)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (330)
...+..+...+...|++++|..+|+++.+.. +.+..++..+..++...|++++|.+.++++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3445666667777777777777777777653 3366667777777777777777777777777664 5566777777777
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHH--HHHHcCCHH
Q 037620 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLH--HLIKAGRTE 202 (330)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~ 202 (330)
+...|++++|.+.++++.+.. +.+...+..+.... |+......+.. .+...|+++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHH
Confidence 777777777777777776653 22222222221100 11111112212 367788999
Q ss_pred HHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHH
Q 037620 203 EAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEM 282 (330)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 282 (330)
+|...++++.+. .+.+..++..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++++
T Consensus 156 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 156 ECRTLLHAALEM--NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999998862 3346778899999999999999999999999887544 6788999999999999999999999999
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCC
Q 037620 283 LDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKT 323 (330)
Q Consensus 283 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (330)
.+.. +.+...+..+...+.+.|++++|.+.+++..+..+.
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 8765 446788999999999999999999999998876654
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.89 E-value=6.4e-21 Score=156.01 Aligned_cols=267 Identities=8% Similarity=-0.029 Sum_probs=220.3
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMIN 88 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (330)
+...+..+...+.+.|++++|+.+|+.+.+.. |.+..+|..+...+...|++++|+..|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568899999999999999999999999853 5578899999999999999999999999999874 446889999999
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCCCChH----------HHHHHHHHHhccCcHHHHHHHHHHHHhcCCC-CChhhHHHHH
Q 037620 89 AHCSAKRYDEAVELFREMEATNCKPSPH----------IFCTLINGLGSEKRLSEALQFFGQSKKRGFE-PEAPTYNAVV 157 (330)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 157 (330)
++...|++++|...|+++.+.. +.+.. .+..+...+...|++++|.+.++++.+.... .+..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999998764 22222 3334588999999999999999999987422 1678899999
Q ss_pred HHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCH
Q 037620 158 GAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQV 237 (330)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (330)
..+...|++++|...+++..+.. +.+..++..+..+|...|++++|...+++..+. .+.+..++..+..+|...|++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCH
Confidence 99999999999999999998864 346889999999999999999999999998872 334577899999999999999
Q ss_pred HHHHHHHHHHHhCCCC-----------ccHHHHHHHHHHHhccCChhHHHHHHHH
Q 037620 238 DMAMRIWDEMKARGVL-----------PVMHMYSTLINSLCHEDKLDDACKYFQE 281 (330)
Q Consensus 238 ~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 281 (330)
++|...|+++.+.... .+...|..+..++...|+.+.+..+.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999998764211 1357889999999999999988887665
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.88 E-value=1.2e-19 Score=143.11 Aligned_cols=275 Identities=12% Similarity=0.101 Sum_probs=216.9
Q ss_pred HHHHHccCChHHHHHHHHHHhhCCCCCCh--HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC
Q 037620 17 IDTLCKSRHVERAQEVFDKMKKRRFDPDI--KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAK 94 (330)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 94 (330)
++.....|+++.|+..++..... .|+. .....+.++|...|+++.|+..++. . -+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCC
Confidence 35566789999999999877653 3433 4556678999999999999986654 2 3667888889999999999
Q ss_pred cHHHHHHHHHHHHhcCC-CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHH
Q 037620 95 RYDEAVELFREMEATNC-KPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMM 173 (330)
Q Consensus 95 ~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (330)
+.++|++.++++...+. |.+...+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999987653 55677778888999999999999999987 467888999999999999999999999
Q ss_pred HHHHHcCCCCcHHHH---HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 037620 174 DEMRKCGIGPNTRTY---DIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR 250 (330)
Q Consensus 174 ~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 250 (330)
+.+.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++...|++++|...+++..+.
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9998864 443211 12223344458999999999999873 5567888999999999999999999999999987
Q ss_pred CCCccHHHHHHHHHHHhccCChhH-HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHH
Q 037620 251 GVLPVMHMYSTLINSLCHEDKLDD-ACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVL 313 (330)
Q Consensus 251 ~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 313 (330)
.+. ++.++..++..+...|+.++ +..+++++.+.. |+... +.....+.+.++++..-
T Consensus 230 ~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~---~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 230 DSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPF---IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHHHHH
Confidence 655 78889999999999999876 578999998754 44433 23445566666666543
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.87 E-value=1.3e-19 Score=142.86 Aligned_cols=255 Identities=13% Similarity=0.158 Sum_probs=208.1
Q ss_pred HHHHhhccChHHHHHHHHHHHhCCCCCCh--HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccC
Q 037620 52 LEGWGQQKNLLSMNEVYREMKDDGFEPDV--VSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEK 129 (330)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (330)
++.....|+++.|+..++..... .|+. .....+.++|...|+++.|+..++. . -+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCC
Confidence 34456789999999999887654 3333 4556678999999999999987654 2 3678889999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 037620 130 RLSEALQFFGQSKKRGFEP-EAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVF 208 (330)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (330)
+.++|.+.++++...+..| +...+..+...+...|++++|+..+++ +.+...+..++..+.+.|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998876444 566677778999999999999999987 457889999999999999999999999
Q ss_pred HHhhcCCCCCCchHHH---HHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhc
Q 037620 209 KRMSRKPGTEPTVSTY---EIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDI 285 (330)
Q Consensus 209 ~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 285 (330)
+++.+. .|+.... ...+..+...|++++|..+|+++.+..+ .+...++.+..++.+.|++++|...++++++.
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999873 2443211 2233444566999999999999998744 48889999999999999999999999999986
Q ss_pred CCCCChhhHHHHHHHHHhcCchHH-HHHHHHHHHhcCCC
Q 037620 286 GIRPPGQLFSNLKQALRDEGMEET-AVVLAQKIDKLRKT 323 (330)
Q Consensus 286 ~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~ 323 (330)
. +.+..++..++..+...|+.++ +.++++++.+..+.
T Consensus 230 ~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 230 D-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred C-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 5 4578889999999999999876 67899998877664
No 25
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=163.95 Aligned_cols=150 Identities=15% Similarity=0.190 Sum_probs=126.4
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhh---CCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHH
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKK---RRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIM 86 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (330)
..+||++|++|++.|++++|.++|+.|.+ .|+.||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45799999999999999999999988764 478999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCc-HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCC------hhhHHHHHHH
Q 037620 87 INAHCSAKR-YDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPE------APTYNAVVGA 159 (330)
Q Consensus 87 l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~ 159 (330)
|.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+.+. .+++.++++ ..++.|+ ..+...|...
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 999999998 478999999999999999999999888655443 444445444 3334443 4555666677
Q ss_pred HHhhC
Q 037620 160 YCWSM 164 (330)
Q Consensus 160 ~~~~~ 164 (330)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 77655
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=4.7e-20 Score=149.09 Aligned_cols=268 Identities=13% Similarity=0.113 Sum_probs=120.9
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHH
Q 037620 8 QELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMI 87 (330)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (330)
+++.+|..+..++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..++...+. .+++.+.+.++
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li 101 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI 101 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHH
Confidence 34458888888888888888888888542 46668888888888888888888877766654 44567777888
Q ss_pred HHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChh
Q 037620 88 NAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIN 167 (330)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (330)
.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+ ..|..++.++.+.|+++
T Consensus 102 ~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq 165 (449)
T 1b89_A 102 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQ 165 (449)
T ss_dssp -------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHH
T ss_pred HHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHH
Confidence 88888888888877773 366678888888888888888888888866 46888888888888888
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 037620 168 DAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEM 247 (330)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 247 (330)
+|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|.+++|..+++..
T Consensus 166 ~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~------~~ad~l~~lv~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 166 AAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp HHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH------hCHhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 888888877 267888888888888888888855444321 23333456788888888888888888887
Q ss_pred HhCCCCccHHHHHHHHHHHhcc--CChhHHHHHHHHHHhcCCCC------ChhhHHHHHHHHHhcCchHHHHHHH
Q 037620 248 KARGVLPVMHMYSTLINSLCHE--DKLDDACKYFQEMLDIGIRP------PGQLFSNLKQALRDEGMEETAVVLA 314 (330)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~ 314 (330)
.... +-....|+.+..+|++- ++..+.++.|..- .+++| +...|..++..|...++++.|....
T Consensus 234 L~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 234 LGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp TTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 7665 33566677776666653 3333444433321 13333 4667888888888888888876543
No 27
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.82 E-value=1.3e-20 Score=164.34 Aligned_cols=150 Identities=11% Similarity=0.143 Sum_probs=125.3
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHh---cCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHH
Q 037620 80 VVSYGIMINAHCSAKRYDEAVELFREMEA---TNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAV 156 (330)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (330)
..||+++|.+|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 46899999999999999999999988764 578999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCh-hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCc------hHHHHHHHH
Q 037620 157 VGAYCWSMRI-NDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPT------VSTYEIVVR 229 (330)
Q Consensus 157 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~ 229 (330)
|.++++.|+. ++|.++|++|...|+.||..+|+.++....+. ..++..+++. ++..|+ ..+...|..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~--P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVK--PTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGC--CCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhC--cccCCCCCCcccccchHHHHH
Confidence 9999999985 78999999999999999999999998766554 4455555553 233333 334445566
Q ss_pred HHHhCC
Q 037620 230 MFCYNA 235 (330)
Q Consensus 230 ~~~~~~ 235 (330)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666554
No 28
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=1.3e-15 Score=129.40 Aligned_cols=243 Identities=13% Similarity=0.086 Sum_probs=132.8
Q ss_pred ccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhc----cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc----cC
Q 037620 58 QKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCS----AKRYDEAVELFREMEATNCKPSPHIFCTLINGLGS----EK 129 (330)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 129 (330)
.+++++|.+.|++..+.+ +...+..+...|.. .++.++|.++|++..+.+ +...+..+...|.. .+
T Consensus 164 ~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~ 237 (490)
T 2xm6_A 164 TRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQ 237 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 334444444444444332 33334444444443 444444444444444432 23334444444433 44
Q ss_pred cHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----hCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHc-----CC
Q 037620 130 RLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCW----SMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKA-----GR 200 (330)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~ 200 (330)
++++|..++++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|... ++
T Consensus 238 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~ 311 (490)
T 2xm6_A 238 DYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKN 311 (490)
T ss_dssp CHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCC
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCC
Confidence 5555555555544432 23344444444444 455566666665555443 334455555555555 56
Q ss_pred HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCC---CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhc----cCChh
Q 037620 201 TEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNA---QVDMAMRIWDEMKARGVLPVMHMYSTLINSLCH----EDKLD 273 (330)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 273 (330)
+++|...+++..+. + +...+..+...|...| ++++|.++|++..+.+ ++..+..+...|.. .++++
T Consensus 312 ~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 384 (490)
T 2xm6_A 312 REQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQ 384 (490)
T ss_dssp HHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 66666666665552 1 2344555555555544 5667777777666653 45566666666666 67777
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCchHHHHHHHHHHHhcCC
Q 037620 274 DACKYFQEMLDIGIRPPGQLFSNLKQALRD----EGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 274 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 322 (330)
+|..+|++..+.+ +...+..+...|.+ .+++++|..++++..+.+.
T Consensus 385 ~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 385 QAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 7777777777654 45566667777776 6777888777777776653
No 29
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.82 E-value=6.9e-18 Score=127.42 Aligned_cols=199 Identities=13% Similarity=0.015 Sum_probs=106.6
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHH
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIM 86 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (330)
|+++..+..+...+.+.|++++|+..|+...+.. |.+...+..+...+.+.|++++|+..+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4556666666666666666666666666666532 3455666666666666666666666666666553 2245556666
Q ss_pred HHHHhcc-----------CcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHH
Q 037620 87 INAHCSA-----------KRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNA 155 (330)
Q Consensus 87 l~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (330)
..++... |++++|+..|++..+.. |.+...+..+..++...|++++|...+++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 6666666 66666666666555554 4445555555555556666666666665555554 44555555
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 037620 156 VVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRM 211 (330)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (330)
+..++...|++++|...+++..+.. +.+...+..+...+...|++++|...+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5555555555555555555555542 123445555555555555555555555544
No 30
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=3.5e-15 Score=126.82 Aligned_cols=223 Identities=8% Similarity=-0.005 Sum_probs=123.7
Q ss_pred ChhhHHHHHHHHHc----cCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhh----ccChHHHHHHHHHHHhCCCCCCh
Q 037620 9 ELPDFNRLIDTLCK----SRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQ----QKNLLSMNEVYREMKDDGFEPDV 80 (330)
Q Consensus 9 ~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 80 (330)
++..+..+...|.. .+++++|...|+...+.| +...+..|...|.. .+++++|.++|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44455555555655 667777777777666643 45566666666666 666777777777666653 44
Q ss_pred HHHHHHHHHHhc----cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc----cCcHHHHHHHHHHHHhcCCCCChhh
Q 037620 81 VSYGIMINAHCS----AKRYDEAVELFREMEATNCKPSPHIFCTLINGLGS----EKRLSEALQFFGQSKKRGFEPEAPT 152 (330)
Q Consensus 81 ~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (330)
..+..|...|.. .+++++|+++|++..+.+ ++..+..+...|.. .+++++|.+.|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 555555566655 556666666666666554 34455555555554 556666666666665553 4455
Q ss_pred HHHHHHHHHh----hCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCCCCchHHH
Q 037620 153 YNAVVGAYCW----SMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIK----AGRTEEAYSVFKRMSRKPGTEPTVSTY 224 (330)
Q Consensus 153 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 224 (330)
+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|..+|++..+. .+...+
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~ 258 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ----GNSIAQ 258 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT----TCHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 5555555555 556666666666555543 33444444444443 44555555555554431 122233
Q ss_pred HHHHHHHHh----CCCHHHHHHHHHHHHhC
Q 037620 225 EIVVRMFCY----NAQVDMAMRIWDEMKAR 250 (330)
Q Consensus 225 ~~l~~~~~~----~~~~~~a~~~~~~~~~~ 250 (330)
..+...|.. .+++++|...|++..+.
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~ 288 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQ 288 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHc
Confidence 334444443 44455555555444433
No 31
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.4e-17 Score=129.28 Aligned_cols=224 Identities=8% Similarity=0.051 Sum_probs=128.1
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCC--CCC----hHHHH
Q 037620 46 KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNC--KPS----PHIFC 119 (330)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 119 (330)
..|..+...+...|++++|+..|+++.+.. .+..++..+..++...|++++|.+.+++..+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 344455555555555555555555555544 4455555555555555555555555555544320 011 35555
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcC
Q 037620 120 TLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAG 199 (330)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (330)
.+..++...|++++|...++++.+.. |+. ..+...|++++|...++.+.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 55566666666666666666655542 221 23444556666666666665542 123445566666666666
Q ss_pred CHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHH
Q 037620 200 RTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYF 279 (330)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 279 (330)
++++|...+++..+. .+.+..++..+...+...|++++|...+++..+.... +...+..+..++...|++++|...+
T Consensus 154 ~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 666666666666541 2234556666666667777777777777666665433 4556666666777777777777777
Q ss_pred HHHHh
Q 037620 280 QEMLD 284 (330)
Q Consensus 280 ~~~~~ 284 (330)
++..+
T Consensus 231 ~~a~~ 235 (258)
T 3uq3_A 231 DAART 235 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.3e-17 Score=127.95 Aligned_cols=227 Identities=11% Similarity=0.046 Sum_probs=195.8
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCC--CC----hhhH
Q 037620 80 VVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFE--PE----APTY 153 (330)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 153 (330)
...+..+...+...|++++|+..|++..+.. .+..++..+..++...|++++|.+.+.++.+.... ++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4577888999999999999999999999887 78899999999999999999999999998775311 12 5788
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh
Q 037620 154 NAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCY 233 (330)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (330)
..+...+...|++++|...+++..... |+. ..+...|++++|...++.+... .+.+...+..+...+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHH
Confidence 899999999999999999999998853 443 3466778899999999998872 33356678889999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHH
Q 037620 234 NAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVL 313 (330)
Q Consensus 234 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 313 (330)
.|++++|...+++..+.... +...+..+..++...|++++|...+++.++.. +.+...+..+..++.+.|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999887654 67889999999999999999999999999865 44688899999999999999999999
Q ss_pred HHHHHhcC
Q 037620 314 AQKIDKLR 321 (330)
Q Consensus 314 ~~~~~~~~ 321 (330)
+++..+..
T Consensus 230 ~~~a~~~~ 237 (258)
T 3uq3_A 230 LDAARTKD 237 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99987765
No 33
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=2.9e-19 Score=144.50 Aligned_cols=249 Identities=14% Similarity=0.151 Sum_probs=111.4
Q ss_pred ccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHH
Q 037620 22 KSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVE 101 (330)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 101 (330)
+.|++++|.++++++. +..+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|.+
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5688999999999883 3358999999999999999999999653 577899999999999999999999
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCC
Q 037620 102 LFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGI 181 (330)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (330)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88777664 4557889999999999999999998885 367789999999999999999999999976
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHH
Q 037620 182 GPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYST 261 (330)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 261 (330)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +...+.....
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~ 212 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEE 212 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHH
Confidence 47899999999999999999999988 2688999999999999999999665544 2234444667
Q ss_pred HHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHH
Q 037620 262 LINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLA 314 (330)
Q Consensus 262 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 314 (330)
++..|.+.|++++|..+++..+... +-....|+.+..+|.+- ++++..+-+
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl 263 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHL 263 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 8899999999999999999998654 45567788777777654 333333333
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.81 E-value=1.6e-17 Score=125.45 Aligned_cols=210 Identities=8% Similarity=-0.021 Sum_probs=98.9
Q ss_pred CCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHH
Q 037620 42 DPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTL 121 (330)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (330)
|++...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+.. |.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3455555555556666666666666666665543 2245555555566666666666666666665554 4455555555
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCH
Q 037620 122 INGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRT 201 (330)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (330)
..++...+. . ... .....|++++|...+++..+... -+...+..+..++...|++
T Consensus 80 g~~~~~~~~-------------~--~~~---------~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~ 134 (217)
T 2pl2_A 80 SEAYVALYR-------------Q--AED---------RERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGER 134 (217)
T ss_dssp HHHHHHHHH-------------T--CSS---------HHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhh-------------h--hhh---------hcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCh
Confidence 555555500 0 000 00001555555555555554321 1344455555555555555
Q ss_pred HHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHH
Q 037620 202 EEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQE 281 (330)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 281 (330)
++|...|++..+. . .+...+..+..++...|++++|...|++..+..+. +...+..+...+...|++++|+..+++
T Consensus 135 ~~A~~~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 135 DKAEASLKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5555555555442 1 34444555555555555555555555555554332 444455555555555555555555554
Q ss_pred H
Q 037620 282 M 282 (330)
Q Consensus 282 ~ 282 (330)
.
T Consensus 211 ~ 211 (217)
T 2pl2_A 211 E 211 (217)
T ss_dssp -
T ss_pred H
Confidence 4
No 35
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.80 E-value=6.7e-17 Score=126.48 Aligned_cols=238 Identities=10% Similarity=0.048 Sum_probs=151.1
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCC--hHHHHHHH
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPD--VVSYGIMI 87 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll 87 (330)
...+......+...|++++|+..|+...+.. |.+...+..+...+...|++++|+..+++..+....++ ..+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3455566777778888888888888877743 33555777777788888888888888888877421121 23467777
Q ss_pred HHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChh
Q 037620 88 NAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIN 167 (330)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (330)
.++...|++++|++.|++..+.. +.+..++..+..+|...|++++|...+++..+.. +.+...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888877765 5566777777778888888888888887777662 344555665552333345777
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHhhcCCCCCCc------hHHHHHHHHHHHhCCCHH
Q 037620 168 DAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGR---TEEAYSVFKRMSRKPGTEPT------VSTYEIVVRMFCYNAQVD 238 (330)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~ 238 (330)
+|...+++..+.. +.+...+..+...+...|+ +++|...+++..+.....|+ ..+|..+...|...|+++
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 7777777776653 2234555556666666665 55566666655442111122 134445555555555555
Q ss_pred HHHHHHHHHHhCC
Q 037620 239 MAMRIWDEMKARG 251 (330)
Q Consensus 239 ~a~~~~~~~~~~~ 251 (330)
+|...+++..+..
T Consensus 239 ~A~~~~~~al~~~ 251 (272)
T 3u4t_A 239 KADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 5555555555543
No 36
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.79 E-value=1.4e-16 Score=124.75 Aligned_cols=230 Identities=12% Similarity=0.030 Sum_probs=106.9
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChh----hHHHHHHHHH
Q 037620 86 MINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAP----TYNAVVGAYC 161 (330)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~ 161 (330)
....+...|++++|+..|++..+.. |.+...+..+..+|...|++++|.+.++++.+.+ ++.. .|..+...+.
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHHH
Confidence 3444444455555555555544443 3333344444445555555555555555544421 1111 2444555555
Q ss_pred hhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHH
Q 037620 162 WSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAM 241 (330)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 241 (330)
..|++++|...+++..+... .+..++..+...+...|++++|...+++..+. .+.+...+..+...+...+++++|.
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544321 23345555555555555555555555555441 2223334444441222333555555
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHHhccCC---hhHHHHHHHHHHhcC-CCCC------hhhHHHHHHHHHhcCchHHHH
Q 037620 242 RIWDEMKARGVLPVMHMYSTLINSLCHEDK---LDDACKYFQEMLDIG-IRPP------GQLFSNLKQALRDEGMEETAV 311 (330)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~a~ 311 (330)
..++++.+.... +...+..+..++...|+ +++|...++++.+.. -.|+ ...+..+...|...|++++|.
T Consensus 163 ~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 555555544322 23444444455554454 555555555554321 0111 134444555555555555555
Q ss_pred HHHHHHHhcCC
Q 037620 312 VLAQKIDKLRK 322 (330)
Q Consensus 312 ~~~~~~~~~~~ 322 (330)
..+++..+..+
T Consensus 242 ~~~~~al~~~p 252 (272)
T 3u4t_A 242 AAWKNILALDP 252 (272)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHhcCc
Confidence 55555554443
No 37
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.79 E-value=4.4e-17 Score=127.72 Aligned_cols=247 Identities=13% Similarity=-0.041 Sum_probs=154.2
Q ss_pred hccChHHHHHHHHHHHhCCC---CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHH
Q 037620 57 QQKNLLSMNEVYREMKDDGF---EPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSE 133 (330)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (330)
..|++++|+..|+++.+... +.+..++..+..++...|++++|...|+++.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34666677777776665421 1134556666666777777777777777766654 4556667777777777777777
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 134 ALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
|...++++.+.. +.+...+..+..++...|++++|...++++.+.. |+.......+..+...|++++|...++....
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 777777776653 3355666677777777777777777777776643 3333333344444566777777777766654
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCc---cHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC
Q 037620 214 KPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLP---VMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPP 290 (330)
Q Consensus 214 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 290 (330)
. .+++...+ .++..+...++.++|...++...+..... +...+..+...+...|++++|...++++.+.. |+
T Consensus 173 ~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~ 247 (275)
T 1xnf_A 173 K--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VH 247 (275)
T ss_dssp H--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CT
T ss_pred c--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--ch
Confidence 2 22333333 35666677777777877777766542211 14677778888888888888888888888643 32
Q ss_pred hhhHHHHHHHHHhcCchHHHHHHH
Q 037620 291 GQLFSNLKQALRDEGMEETAVVLA 314 (330)
Q Consensus 291 ~~~~~~l~~~~~~~g~~~~a~~~~ 314 (330)
. +.....++...|++++|.+.+
T Consensus 248 ~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CHHHHHHHHHHHHHHHC----
T ss_pred h--HHHHHHHHHHHHHHHhhHHHH
Confidence 2 223345666777888777665
No 38
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=1.2e-15 Score=129.17 Aligned_cols=310 Identities=10% Similarity=0.006 Sum_probs=224.3
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhC--------CCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhC----
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKR--------RFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDD---- 74 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 74 (330)
+.....||.+..++...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344667999999999999999999999886541 12334578999999999999999999999887653
Q ss_pred -C-C-CCChHHHHHHHHHHhc--cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHH---hccCcHHHHHHHHHHHHhcCC
Q 037620 75 -G-F-EPDVVSYGIMINAHCS--AKRYDEAVELFREMEATNCKPSPHIFCTLINGL---GSEKRLSEALQFFGQSKKRGF 146 (330)
Q Consensus 75 -~-~-~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~ 146 (330)
+ . .....++..+..++.. .+++++|+..|++..+.. |.++..+..+..++ ...++.++|++.+++..+..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 1 1 1134566655555544 457999999999999876 56677776666554 44567788999999888774
Q ss_pred CCChhhHHHHHHHHHh----hCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchH
Q 037620 147 EPEAPTYNAVVGAYCW----SMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVS 222 (330)
Q Consensus 147 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 222 (330)
+.+...+..+...+.. .+++++|...+++..... +.+..++..+...|...|++++|...+++..+. .+.+..
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 282 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAY 282 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHH
Confidence 3455666666555544 467889999999988764 346778899999999999999999999998862 333455
Q ss_pred HHHHHHHHHHhC-------------------CCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 037620 223 TYEIVVRMFCYN-------------------AQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEML 283 (330)
Q Consensus 223 ~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 283 (330)
++..+..+|... +.++.|...++...+.... +..++..+...+...|++++|...|++.+
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL 361 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEF 361 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHH
Confidence 666666555332 3456788888887776544 55678889999999999999999999999
Q ss_pred hcCCCCChh--hHHHHHH-HHHhcCchHHHHHHHHHHHhcCC
Q 037620 284 DIGIRPPGQ--LFSNLKQ-ALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 284 ~~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
+....+... .+..+.. .....|++++|+..+++..+...
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~ 403 (472)
T 4g1t_A 362 SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ 403 (472)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC
T ss_pred hcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 765333221 2223332 24578999999999998877654
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.78 E-value=4e-17 Score=127.95 Aligned_cols=246 Identities=9% Similarity=-0.044 Sum_probs=196.4
Q ss_pred HccCChHHHHHHHHHHhhCCC---CCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHH
Q 037620 21 CKSRHVERAQEVFDKMKKRRF---DPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYD 97 (330)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 97 (330)
...|++++|+..|+.+.+... +.+..+|..+...+...|++++|...|+++.+.. +.+..++..+..++...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 456889999999999988532 1246788899999999999999999999999875 447889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHH
Q 037620 98 EAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMR 177 (330)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (330)
+|.+.|+++.+.. +.+..++..+..+|...|++++|...++++.+.. |+.......+..+...|++++|...++...
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999876 6678999999999999999999999999999873 454455555566677899999999998887
Q ss_pred HcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCc-----hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 037620 178 KCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPT-----VSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV 252 (330)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 252 (330)
... +++...+ .++..+...++.++|...+...... .|+ ..++..+...+...|++++|...|++..+..+
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 753 3344444 3677778888899999999988652 221 46788899999999999999999999988743
Q ss_pred CccHHHHHHHHHHHhccCChhHHHHHH
Q 037620 253 LPVMHMYSTLINSLCHEDKLDDACKYF 279 (330)
Q Consensus 253 ~~~~~~~~~l~~~~~~~~~~~~a~~~~ 279 (330)
. + +.....++...|++++|+..+
T Consensus 247 ~-~---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 H-N---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T-T---CHHHHHHHHHHHHHHHC----
T ss_pred h-h---HHHHHHHHHHHHHHHhhHHHH
Confidence 2 2 333355667788888887766
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.77 E-value=3e-16 Score=127.89 Aligned_cols=228 Identities=7% Similarity=0.030 Sum_probs=107.0
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCc-HHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 037620 47 SYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKR-YDEAVELFREMEATNCKPSPHIFCTLINGL 125 (330)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (330)
.|..+...+...|++++|+..++++++.. +-+...|..+..++...|+ +++|+..|+++++.+ +.+..+|..+..++
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 34444444444555555555555555442 2234444445555555553 555555555555444 34444555555555
Q ss_pred hccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH-cCCHHHH
Q 037620 126 GSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIK-AGRTEEA 204 (330)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a 204 (330)
...|++++|+..++++.+.. +.+...|..+..++...|++++|+..++++++.... +...|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHH
Confidence 55555555555555555443 234444555555555555555555555555544321 34445555555544 3333444
Q ss_pred -----HHHHHHhhcCCCCCCchHHHHHHHHHHHhCC--CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccC-------
Q 037620 205 -----YSVFKRMSRKPGTEPTVSTYEIVVRMFCYNA--QVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHED------- 270 (330)
Q Consensus 205 -----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------- 270 (330)
+..+++... -.+-+...|..+...+...| ++++|.+.+.++ +... .+...+..+..+|.+.|
T Consensus 255 ~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p-~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 255 VLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH-SSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC-CCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC-CCHHHHHHHHHHHHHHhcccccch
Confidence 244444443 11223344445555555544 355555555554 2221 13444455555554432
Q ss_pred --ChhHHHHHHHHH
Q 037620 271 --KLDDACKYFQEM 282 (330)
Q Consensus 271 --~~~~a~~~~~~~ 282 (330)
..++|+.+++++
T Consensus 331 ~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 331 EDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 135555555555
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.77 E-value=3.2e-16 Score=127.71 Aligned_cols=246 Identities=9% Similarity=0.040 Sum_probs=177.1
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccC-hHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN-LLSMNEVYREMKDDGFEPDVVSYGIMIN 88 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (330)
...|+.+...+.+.|++++|+..++.+++.. |-+..+|+.+..++...|+ +++|+..|+++++.. +-+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4557777777888888888888888887743 4466778888888888886 888888888888775 336777888888
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-hCChh
Q 037620 89 AHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCW-SMRIN 167 (330)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 167 (330)
++...|++++|+..|+++++.+ +-+..+|..+..++.+.|++++|+..++++++.. +.+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 8888888888888888888776 6677888888888888888888888888888774 4466778888888777 55546
Q ss_pred HH-----HHHHHHHHHcCCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCC-----
Q 037620 168 DA-----YRMMDEMRKCGIGPNTRTYDIVLHHLIKAG--RTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNA----- 235 (330)
Q Consensus 168 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----- 235 (330)
+| +..+++...... -+...|..+...+...| ++++|...+..+ + ..+.+...+..+..+|...|
T Consensus 253 eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp HHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhccccc
Confidence 66 467777776542 25667777777777776 577888888777 3 23445667777777777763
Q ss_pred ----CHHHHHHHHHHH-HhCCCCccHHHHHHHHH
Q 037620 236 ----QVDMAMRIWDEM-KARGVLPVMHMYSTLIN 264 (330)
Q Consensus 236 ----~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~ 264 (330)
..++|.++++++ .+.+.. ....|..+..
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~ 361 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTI-RKEYWRYIGR 361 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 247788888887 554322 3344444433
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.77 E-value=4.2e-15 Score=116.38 Aligned_cols=224 Identities=12% Similarity=0.022 Sum_probs=175.5
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhc----cCcHHHHHHHHHHHHhcCCCCChHHHH
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCS----AKRYDEAVELFREMEATNCKPSPHIFC 119 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (330)
+..++..+...+...|++++|++.|++..+. -+...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5677778888888888888888888888873 255677778888888 888888888888888765 667778
Q ss_pred HHHHHHhc----cCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----hCChhHHHHHHHHHHHcCCCCcHHHHHHH
Q 037620 120 TLINGLGS----EKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCW----SMRINDAYRMMDEMRKCGIGPNTRTYDIV 191 (330)
Q Consensus 120 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (330)
.+...|.. .+++++|.+.+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 88888888 888888888888888774 66777888888888 888888888888888765 55667777
Q ss_pred HHHHHH----cCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 037620 192 LHHLIK----AGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCY----NAQVDMAMRIWDEMKARGVLPVMHMYSTLI 263 (330)
Q Consensus 192 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 263 (330)
...|.. .+++++|...+++..+. .+...+..+...|.. .+++++|...+++..+.+. ...+..+.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~ 225 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLG 225 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHH
Confidence 777777 78888888888887762 245566777777888 8888888888888877643 45677777
Q ss_pred HHHhc----cCChhHHHHHHHHHHhcC
Q 037620 264 NSLCH----EDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 264 ~~~~~----~~~~~~a~~~~~~~~~~~ 286 (330)
..|.. .+++++|...+++..+.+
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77777 788888888888887765
No 43
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=1.7e-14 Score=123.81 Aligned_cols=167 Identities=12% Similarity=0.042 Sum_probs=80.6
Q ss_pred ChhhHHHHHHHHHh-------hCChh-------HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 037620 149 EAPTYNAVVGAYCW-------SMRIN-------DAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRK 214 (330)
Q Consensus 149 ~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (330)
+...|..++..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++.+
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~- 349 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA- 349 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC-
Confidence 44455555555443 45554 5556665555421222345555555555556666666666665554
Q ss_pred CCCCCc--hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHH-HhccCChhHHHHHHHHHHhcCCCCCh
Q 037620 215 PGTEPT--VSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINS-LCHEDKLDDACKYFQEMLDIGIRPPG 291 (330)
Q Consensus 215 ~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~ 291 (330)
..|+ ...|...+..+.+.|++++|..+|++..+.... +...|...+.. +...|+.++|..+|++.++.. +.+.
T Consensus 350 --~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~ 425 (530)
T 2ooe_A 350 --IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIP 425 (530)
T ss_dssp --SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCH
T ss_pred --ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCH
Confidence 1222 124555555555555555555555555543211 12222211111 223455555555555555432 2234
Q ss_pred hhHHHHHHHHHhcCchHHHHHHHHHHHhc
Q 037620 292 QLFSNLKQALRDEGMEETAVVLAQKIDKL 320 (330)
Q Consensus 292 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (330)
..|..++..+.+.|+.++|..++++....
T Consensus 426 ~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 426 EYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 45555555555555555555555555544
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.77 E-value=5.9e-15 Score=115.52 Aligned_cols=224 Identities=12% Similarity=0.052 Sum_probs=165.0
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhh----ccChHHHHHHHHHHHhCCCCCChHHHH
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQ----QKNLLSMNEVYREMKDDGFEPDVVSYG 84 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (330)
++.++..+...+...|++++|...|+...+. .+..++..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4566777777777888888888888877773 355667777777777 788888888888877764 666777
Q ss_pred HHHHHHhc----cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc----cCcHHHHHHHHHHHHhcCCCCChhhHHHH
Q 037620 85 IMINAHCS----AKRYDEAVELFREMEATNCKPSPHIFCTLINGLGS----EKRLSEALQFFGQSKKRGFEPEAPTYNAV 156 (330)
Q Consensus 85 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (330)
.+...+.. .+++++|++.|++..+.+ +..++..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 788888888888777664 56677777777777 788888888888877765 45566677
Q ss_pred HHHHHh----hCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCCCCchHHHHHHH
Q 037620 157 VGAYCW----SMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIK----AGRTEEAYSVFKRMSRKPGTEPTVSTYEIVV 228 (330)
Q Consensus 157 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 228 (330)
...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+. + +...+..+.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~l~ 225 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-E---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC-C---CHHHHHHHH
Confidence 777776 778888888888777753 45667777777777 78888888888877662 1 245566677
Q ss_pred HHHHh----CCCHHHHHHHHHHHHhCC
Q 037620 229 RMFCY----NAQVDMAMRIWDEMKARG 251 (330)
Q Consensus 229 ~~~~~----~~~~~~a~~~~~~~~~~~ 251 (330)
..|.. .+++++|...|++..+.+
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77777 778888888888777765
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.76 E-value=1.1e-15 Score=118.16 Aligned_cols=201 Identities=13% Similarity=0.056 Sum_probs=126.7
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 037620 80 VVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGA 159 (330)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (330)
...+..+...+...|++++|.+.|+++.+.. +.+..++..+..++...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4556666677777777777777777776654 4566667777777777777777777777766653 3355566666666
Q ss_pred HHhhCChhHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHH
Q 037620 160 YCWSMRINDAYRMMDEMRKCGIGP-NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVD 238 (330)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (330)
+...|++++|...++++...+..| +...+..+...+...|++++|...+++..+. .+.+...+..+...+...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHH
Confidence 666777777777776665522222 3455566666666666666666666666542 2223555666666666666666
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhc
Q 037620 239 MAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDI 285 (330)
Q Consensus 239 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 285 (330)
+|...++++.+.... +...+..+...+...|++++|...++++.+.
T Consensus 193 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666666666654332 4455566666666666666666666666654
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.76 E-value=1.6e-15 Score=117.29 Aligned_cols=202 Identities=13% Similarity=0.044 Sum_probs=168.9
Q ss_pred hHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 037620 45 IKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124 (330)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (330)
...|..+...+...|++++|.+.|+++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5677888888899999999999999988764 4467888888899999999999999999988875 5678888889999
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHH
Q 037620 125 LGSEKRLSEALQFFGQSKKRGFEP-EAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEE 203 (330)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (330)
|...|++++|.++++++.+.+..| +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999988732233 55677888888999999999999999988864 3357788889999999999999
Q ss_pred HHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 037620 204 AYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG 251 (330)
Q Consensus 204 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 251 (330)
|...++.+.+ ..+.+...+..+...+...|++++|.+.++++.+..
T Consensus 194 A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQ--GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHT--TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH--hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999876 234566678888888999999999999999988764
No 47
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=1.6e-15 Score=128.31 Aligned_cols=308 Identities=10% Similarity=-0.015 Sum_probs=211.0
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhC-----C-C-CCChHHHHHHHHHHhh--ccChHHHHHHHHHHHhCCCCCC
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKR-----R-F-DPDIKSYTILLEGWGQ--QKNLLSMNEVYREMKDDGFEPD 79 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~-~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~ 79 (330)
...+|+.+..+|...|++++|...++...+. + . .....++..+..++.. .+++++|++.|++..+.. +-+
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~ 171 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKN 171 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCC
Confidence 4567999999999999999999999887642 1 1 1234566665555544 457899999999999874 224
Q ss_pred hHHHHHHHHH---HhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHh----ccCcHHHHHHHHHHHHhcCCCCChhh
Q 037620 80 VVSYGIMINA---HCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLG----SEKRLSEALQFFGQSKKRGFEPEAPT 152 (330)
Q Consensus 80 ~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (330)
...+..+..+ +...++.++|++.+++..+.+ +.+..++..+...+. ..+++++|.+.+++..... +.+..+
T Consensus 172 ~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~ 249 (472)
T 4g1t_A 172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDV 249 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHH
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHH
Confidence 5555555544 344577788999999988876 666777766655444 4567889999999988874 557778
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHhhc
Q 037620 153 YNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKA-------------------GRTEEAYSVFKRMSR 213 (330)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~ 213 (330)
+..+...|...|++++|...+++..+... .+..++..+..+|... +..+.|...++...+
T Consensus 250 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 328 (472)
T 4g1t_A 250 LRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE 328 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 89999999999999999999999988643 3556666666555322 235677888887765
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHH--HHHHHHH-HHhccCChhHHHHHHHHHHhcCC---
Q 037620 214 KPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMH--MYSTLIN-SLCHEDKLDDACKYFQEMLDIGI--- 287 (330)
Q Consensus 214 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--- 287 (330)
. .+.+..++..+...+...|++++|...|++..+....+... .+..+.. .....|++++|+..+++.++...
T Consensus 329 ~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~ 406 (472)
T 4g1t_A 329 A--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR 406 (472)
T ss_dssp H--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCH
T ss_pred c--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence 2 23345577889999999999999999999998876544321 2233332 34578999999999888765321
Q ss_pred --------------------CCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 288 --------------------RPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 288 --------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
+.+..+|..+...|...|++++|.+.+++..+.+.
T Consensus 407 ~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 407 EKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 34567889999999999999999999999987665
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.76 E-value=1.3e-15 Score=115.51 Aligned_cols=203 Identities=11% Similarity=-0.049 Sum_probs=137.2
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 037620 79 DVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVG 158 (330)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (330)
+...+..+...+...|++++|.+.++++.+.. +.+..++..+..++...|++++|.+.++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45666777777777888888888887777665 5566777777777777788888887777777663 345666777777
Q ss_pred HHHhh-CChhHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC
Q 037620 159 AYCWS-MRINDAYRMMDEMRKCGIGP-NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQ 236 (330)
Q Consensus 159 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (330)
.+... |++++|...++.+...+..| +...+..+...+...|++++|...++++.+. .+.+...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCC
Confidence 77777 77777777777776622222 2456666777777777777777777776652 22345566667777777777
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhc
Q 037620 237 VDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDI 285 (330)
Q Consensus 237 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 285 (330)
+++|...++++.+.....+...+..+...+...|+.+.|..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 7777777777666543124555666666666777777777777776543
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.75 E-value=1.9e-16 Score=121.65 Aligned_cols=196 Identities=16% Similarity=0.196 Sum_probs=82.4
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhh
Q 037620 84 GIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWS 163 (330)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (330)
..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+...+...
T Consensus 27 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 27 GQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVK 104 (243)
T ss_dssp ---------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHh
Confidence 333334444444444444444444332 3333444444444444444444444444444332 22333444444444444
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHH
Q 037620 164 MRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRI 243 (330)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 243 (330)
|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...
T Consensus 105 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp TCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44444444444444432 123334444444444555555555555444431 122334444555555555555555555
Q ss_pred HHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhc
Q 037620 244 WDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDI 285 (330)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 285 (330)
++++.+.... +..++..+..++...|++++|...++++.+.
T Consensus 182 ~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 182 FAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 5555444322 3445555555555555555555555555543
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.75 E-value=2.5e-16 Score=121.02 Aligned_cols=201 Identities=11% Similarity=0.102 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 037620 45 IKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124 (330)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (330)
...|..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+..++..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3445555556666666666666666666543 2345556666666666666666666666666554 4455666666666
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHH
Q 037620 125 LGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEA 204 (330)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 204 (330)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666666553 3345566666666666666666666666666543 22455666666666677777777
Q ss_pred HHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 037620 205 YSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG 251 (330)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 251 (330)
...++++.+. .+.+..++..+..++...|++++|...++++.+..
T Consensus 179 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQ--DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 7777666552 22345566666777777777777777777766654
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.75 E-value=1.7e-15 Score=114.87 Aligned_cols=199 Identities=10% Similarity=0.004 Sum_probs=90.9
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINA 89 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (330)
+..+..+...+...|++++|.+.|+.+.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3444555555555555555555555554421 2234445555555555555555555555554442 2234444445555
Q ss_pred Hhcc-CcHHHHHHHHHHHHhcCC-CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChh
Q 037620 90 HCSA-KRYDEAVELFREMEATNC-KPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIN 167 (330)
Q Consensus 90 ~~~~-~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (330)
+... |++++|...++++.+.+. +.+..++..+..++...|++++|...+.++.+.. +.+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 5555 555555555555444111 1123444444444555555555555554444432 223344444444444444444
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 037620 168 DAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRM 211 (330)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (330)
+|...++.........+...+..+...+...|+.+++..+++.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 44444444443321123333334444444444444444444444
No 52
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.73 E-value=2.2e-16 Score=130.82 Aligned_cols=300 Identities=14% Similarity=0.068 Sum_probs=224.8
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC----hHHHHHHHHHHhhccChHHHHHHHHHHHhC----CCCC
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPD----IKSYTILLEGWGQQKNLLSMNEVYREMKDD----GFEP 78 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 78 (330)
.+....+......+...|++++|...|+...+.. +.+ ..+|..+...+...|++++|...+++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 4455667788889999999999999999998853 223 357888889999999999999999987643 2111
Q ss_pred -ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-----CCCChHHHHHHHHHHhccCc--------------------HH
Q 037620 79 -DVVSYGIMINAHCSAKRYDEAVELFREMEATN-----CKPSPHIFCTLINGLGSEKR--------------------LS 132 (330)
Q Consensus 79 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~--------------------~~ 132 (330)
...++..+...+...|++++|...+++..+.. ......++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 25577788899999999999999999876542 01124578888999999999 99
Q ss_pred HHHHHHHHHHhc----CC-CCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCC-CCc----HHHHHHHHHHHHHcCCHH
Q 037620 133 EALQFFGQSKKR----GF-EPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGI-GPN----TRTYDIVLHHLIKAGRTE 202 (330)
Q Consensus 133 ~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~ 202 (330)
+|...+.+..+. +. +....++..+...+...|++++|...+++...... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999998876543 11 11234678888999999999999999998765311 111 237888889999999999
Q ss_pred HHHHHHHHhhcCC---CCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC----CC-ccHHHHHHHHHHHhccCChh
Q 037620 203 EAYSVFKRMSRKP---GTEP-TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG----VL-PVMHMYSTLINSLCHEDKLD 273 (330)
Q Consensus 203 ~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~ 273 (330)
+|...+++..... +..+ ...++..+...+...|++++|...+++..+.. .. ....++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999876411 1111 14577888999999999999999999876531 11 12457788889999999999
Q ss_pred HHHHHHHHHHhc----CC-CCChhhHHHHHHHHHhcCch
Q 037620 274 DACKYFQEMLDI----GI-RPPGQLFSNLKQALRDEGME 307 (330)
Q Consensus 274 ~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 307 (330)
+|...+++..+. +. .....++..+...+...|+.
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 999999988753 21 11245666777777777765
No 53
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.73 E-value=5.7e-16 Score=128.28 Aligned_cols=278 Identities=14% Similarity=0.080 Sum_probs=212.5
Q ss_pred CCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCC----hHHHHHHHHHHhccCcHHHHHHHHHHHHhc----CC-C
Q 037620 42 DPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPD----VVSYGIMINAHCSAKRYDEAVELFREMEAT----NC-K 112 (330)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~ 112 (330)
......+......+...|++++|...|+++.+.+.. + ..++..+...+...|++++|...+++.... +. +
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 345667778888899999999999999999987422 3 357788889999999999999999987543 11 2
Q ss_pred CChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhhCC--------------------hh
Q 037620 113 PSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFE-PE----APTYNAVVGAYCWSMR--------------------IN 167 (330)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~ 167 (330)
....++..+...|...|++++|...+.+..+.... ++ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 23567888899999999999999999887654110 11 3478888899999999 99
Q ss_pred HHHHHHHHHHHc----CCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCc----hHHHHHHHHHHHhCCCHH
Q 037620 168 DAYRMMDEMRKC----GIG-PNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPT----VSTYEIVVRMFCYNAQVD 238 (330)
Q Consensus 168 ~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~ 238 (330)
+|...+++.... +.. ....++..+...+...|++++|...+++..+.....++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999998876542 111 12356788889999999999999999987642111122 337888899999999999
Q ss_pred HHHHHHHHHHhCC----CCc-cHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCchH
Q 037620 239 MAMRIWDEMKARG----VLP-VMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIR-PP----GQLFSNLKQALRDEGMEE 308 (330)
Q Consensus 239 ~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~ 308 (330)
+|...+++..+.. ..+ ...++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999876531 111 1457788899999999999999999998753111 11 557788899999999999
Q ss_pred HHHHHHHHHHhc
Q 037620 309 TAVVLAQKIDKL 320 (330)
Q Consensus 309 ~a~~~~~~~~~~ 320 (330)
+|...+++..+.
T Consensus 325 ~A~~~~~~al~~ 336 (406)
T 3sf4_A 325 QAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.73 E-value=2.1e-16 Score=131.29 Aligned_cols=275 Identities=16% Similarity=0.069 Sum_probs=191.0
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCCh----HHHHHHHHHHhccCcHHHHHHHHHHHHhc----C-CCCChH
Q 037620 46 KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDV----VSYGIMINAHCSAKRYDEAVELFREMEAT----N-CKPSPH 116 (330)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 116 (330)
..+..+...+...|++++|+..|+++.+.+.. +. ..+..+..++...|++++|...+++..+. + .+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34445666778888888888888888876322 32 46777778888888888888888877653 1 133456
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcC-----CCCChhhHHHHHHHHHhhCC-----------------hhHHHHHHH
Q 037620 117 IFCTLINGLGSEKRLSEALQFFGQSKKRG-----FEPEAPTYNAVVGAYCWSMR-----------------INDAYRMMD 174 (330)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 174 (330)
++..+...|...|++++|...+.++.+.. .+....++..+...|...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 67778888888888888888887765531 11234467777888888888 888888877
Q ss_pred HHHHc----CC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCc----hHHHHHHHHHHHhCCCHHHHHHHHH
Q 037620 175 EMRKC----GI-GPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPT----VSTYEIVVRMFCYNAQVDMAMRIWD 245 (330)
Q Consensus 175 ~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 245 (330)
+.... +. .....++..+...+...|++++|...+++..+.....++ ..++..+...+...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 76442 11 112346777788888889999888888877641111111 2367778888888999999999888
Q ss_pred HHHhCCCC-----ccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCC-----CCChhhHHHHHHHHHhcCchHHHHHHHH
Q 037620 246 EMKARGVL-----PVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGI-----RPPGQLFSNLKQALRDEGMEETAVVLAQ 315 (330)
Q Consensus 246 ~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 315 (330)
+..+.... ....++..+...+...|++++|...+++.++... .....++..+...|.+.|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 77653111 1245677788888889999999998888765310 1113467778888888999999988888
Q ss_pred HHHhcC
Q 037620 316 KIDKLR 321 (330)
Q Consensus 316 ~~~~~~ 321 (330)
+..+..
T Consensus 368 ~al~~~ 373 (411)
T 4a1s_A 368 QHLQLA 373 (411)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 876543
No 55
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.71 E-value=4.9e-16 Score=125.15 Aligned_cols=136 Identities=13% Similarity=0.085 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCC----chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC----C-ccH
Q 037620 186 RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEP----TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV----L-PVM 256 (330)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~ 256 (330)
..+..+...+...|++++|...+++..+.....+ ...++..+...+...|++++|...+++..+... . ...
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 3555666667777777777777766543110001 123566777777788888888888777654311 1 114
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHhcC----C-CCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcC
Q 037620 257 HMYSTLINSLCHEDKLDDACKYFQEMLDIG----I-RPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLR 321 (330)
Q Consensus 257 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (330)
.++..+...+...|++++|...+++..+.. - .....++..+...+.+.|++++|...+++..+..
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 566777778888888888888888776421 0 1113466677888888888888888888877654
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.71 E-value=2.6e-16 Score=130.69 Aligned_cols=275 Identities=14% Similarity=0.081 Sum_probs=211.4
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCh----HHHHHHHHHHhhccChHHHHHHHHHHHhC----C-CCCCh
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDI----KSYTILLEGWGQQKNLLSMNEVYREMKDD----G-FEPDV 80 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~ 80 (330)
...+..+...+...|++++|+..|+...+.. +.+. ..|..+...+...|++++|+..+++..+. + .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 3445567778899999999999999998853 2233 47888899999999999999999988754 1 12245
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcC-----CCCChHHHHHHHHHHhccCc-----------------HHHHHHHH
Q 037620 81 VSYGIMINAHCSAKRYDEAVELFREMEATN-----CKPSPHIFCTLINGLGSEKR-----------------LSEALQFF 138 (330)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~ 138 (330)
.++..+...+...|++++|...+++..+.. .+....++..+...|...|+ +++|.+.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 677888899999999999999999876541 12345678888999999999 99999998
Q ss_pred HHHHhc----CC-CCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCC-Cc----HHHHHHHHHHHHHcCCHHHHHHHH
Q 037620 139 GQSKKR----GF-EPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIG-PN----TRTYDIVLHHLIKAGRTEEAYSVF 208 (330)
Q Consensus 139 ~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~ 208 (330)
.+..+. +. ......+..+...+...|++++|...+++..+.... .+ ...+..+...+...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 887543 11 112347788889999999999999999988653110 11 237788889999999999999999
Q ss_pred HHhhcCCCCC----CchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC-----CCccHHHHHHHHHHHhccCChhHHHHHH
Q 037620 209 KRMSRKPGTE----PTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG-----VLPVMHMYSTLINSLCHEDKLDDACKYF 279 (330)
Q Consensus 209 ~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 279 (330)
++........ ....++..+...+...|++++|...+++..+.. ......++..+...|...|++++|...+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 8876411111 124577888999999999999999999887541 1112457888899999999999999999
Q ss_pred HHHHhc
Q 037620 280 QEMLDI 285 (330)
Q Consensus 280 ~~~~~~ 285 (330)
++..+.
T Consensus 367 ~~al~~ 372 (411)
T 4a1s_A 367 EQHLQL 372 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=7.4e-14 Score=111.23 Aligned_cols=234 Identities=8% Similarity=0.022 Sum_probs=151.9
Q ss_pred hHHHHHHHHHHhhc----cCh----HHHHHHHHHHHhCCCCCChHHHHHHHHHHhc-------cCcH-------HHHHHH
Q 037620 45 IKSYTILLEGWGQQ----KNL----LSMNEVYREMKDDGFEPDVVSYGIMINAHCS-------AKRY-------DEAVEL 102 (330)
Q Consensus 45 ~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~-------~~a~~~ 102 (330)
...|...+..-.+. ++. ++|..+|++..... +.+...|..++..+.. .|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 44566666554332 232 56777777777653 3466677777766653 3664 777788
Q ss_pred HHHHHhc-CCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCC-hh-hHHHHHHHHHhhCChhHHHHHHHHHHHc
Q 037620 103 FREMEAT-NCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPE-AP-TYNAVVGAYCWSMRINDAYRMMDEMRKC 179 (330)
Q Consensus 103 ~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (330)
|++..+. . |.+...|..++..+.+.|++++|.++|+++.+. .|+ .. .|..++..+.+.|++++|..+|++..+.
T Consensus 87 ~~rAl~~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 87 YERAISTLL-KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHTTTT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8777763 3 445667777777777778888888888877765 333 33 6777777777777788888777777765
Q ss_pred CCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC-CCc--c
Q 037620 180 GIGPNTRTYDIVLHHLI-KAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG-VLP--V 255 (330)
Q Consensus 180 ~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~ 255 (330)
.. .+...|........ ..|++++|..+|++..+. .+.+...|..++..+...|++++|..+|++..+.. ..| .
T Consensus 164 ~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~ 240 (308)
T 2ond_A 164 AR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 240 (308)
T ss_dssp TT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC
T ss_pred CC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHH
Confidence 32 23444443333222 257777777777777652 22345667777777777777777777777777652 233 3
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhc
Q 037620 256 MHMYSTLINSLCHEDKLDDACKYFQEMLDI 285 (330)
Q Consensus 256 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 285 (330)
...|..++......|+.+.|..+++++.+.
T Consensus 241 ~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 241 GEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456677777777777777777777777754
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.70 E-value=9.6e-16 Score=123.43 Aligned_cols=275 Identities=13% Similarity=0.079 Sum_probs=208.7
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC----hHHHHHHHHHHhhccChHHHHHHHHHHHhC----CCC-CCh
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPD----IKSYTILLEGWGQQKNLLSMNEVYREMKDD----GFE-PDV 80 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~ 80 (330)
...+......+...|++++|...|+.+.+.. +.+ ...+..+...+...|++++|.+.+++.... +.. ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 3445666778899999999999999998853 223 367888899999999999999999987653 111 235
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCC-CCC----hHHHHHHHHHHhccCc--------------------HHHHH
Q 037620 81 VSYGIMINAHCSAKRYDEAVELFREMEATNC-KPS----PHIFCTLINGLGSEKR--------------------LSEAL 135 (330)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~ 135 (330)
.++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 6778888999999999999999998765320 111 3478888899999999 99999
Q ss_pred HHHHHHHhc----CC-CCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcC----C-CCcHHHHHHHHHHHHHcCCHHHHH
Q 037620 136 QFFGQSKKR----GF-EPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCG----I-GPNTRTYDIVLHHLIKAGRTEEAY 205 (330)
Q Consensus 136 ~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~ 205 (330)
+.+.+.... +. ......+..+...+...|++++|...+++..+.. . .....++..+...+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 998876542 11 1123467788889999999999999999876521 1 111237788889999999999999
Q ss_pred HHHHHhhcCCCCCCc----hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC-----CCccHHHHHHHHHHHhccCChhHHH
Q 037620 206 SVFKRMSRKPGTEPT----VSTYEIVVRMFCYNAQVDMAMRIWDEMKARG-----VLPVMHMYSTLINSLCHEDKLDDAC 276 (330)
Q Consensus 206 ~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~ 276 (330)
..+++.........+ ..++..+...+...|++++|...+++..+.. ......++..+...+...|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999987641111111 4567888899999999999999999876531 1112446778899999999999999
Q ss_pred HHHHHHHhc
Q 037620 277 KYFQEMLDI 285 (330)
Q Consensus 277 ~~~~~~~~~ 285 (330)
..+++..+.
T Consensus 324 ~~~~~a~~~ 332 (338)
T 3ro2_A 324 HFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999999864
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.68 E-value=1.2e-13 Score=110.01 Aligned_cols=239 Identities=8% Similarity=0.081 Sum_probs=188.6
Q ss_pred hhhHHHHHHHHHcc----CCh----HHHHHHHHHHhhCCCCCChHHHHHHHHHHh-------hccCh-------HHHHHH
Q 037620 10 LPDFNRLIDTLCKS----RHV----ERAQEVFDKMKKRRFDPDIKSYTILLEGWG-------QQKNL-------LSMNEV 67 (330)
Q Consensus 10 ~~~~~~li~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~ 67 (330)
...|...+..-.+. ++. ++|..+|+..... .|.+...|..++..+. +.|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 45677777765554 233 6888999999884 3567888888887775 35886 899999
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChH-HHHHHHHHHhccCcHHHHHHHHHHHHhcCC
Q 037620 68 YREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPH-IFCTLINGLGSEKRLSEALQFFGQSKKRGF 146 (330)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 146 (330)
|++..+.-.+-+...|..++..+.+.|++++|.++|+++.+.. +.+.. +|..++..+.+.|++++|..+|++..+..
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~- 164 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA- 164 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 9999983113366789999999999999999999999999864 33444 89999999999999999999999999874
Q ss_pred CCChhhHHHHHHHHH-hhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCC--chHH
Q 037620 147 EPEAPTYNAVVGAYC-WSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEP--TVST 223 (330)
Q Consensus 147 ~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ 223 (330)
+++...|........ ..|++++|..+|+...+.. +.+...|..++..+.+.|++++|..+|++.......+| ....
T Consensus 165 p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l 243 (308)
T 2ond_A 165 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243 (308)
T ss_dssp TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 344555554443322 3699999999999998763 33678899999999999999999999999988433454 3567
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 037620 224 YEIVVRMFCYNAQVDMAMRIWDEMKARGV 252 (330)
Q Consensus 224 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 252 (330)
|..++......|+.+.|..+++++.+..+
T Consensus 244 ~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 244 WARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 88889989999999999999999987643
No 60
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.68 E-value=1.9e-14 Score=118.40 Aligned_cols=299 Identities=12% Similarity=0.102 Sum_probs=211.0
Q ss_pred HHccCChHHHHHHHHHHhhC--CC--CCChHHHHHHHHH--HhhccChHHHH-----------HHHHHHHhCCCCCChHH
Q 037620 20 LCKSRHVERAQEVFDKMKKR--RF--DPDIKSYTILLEG--WGQQKNLLSMN-----------EVYREMKDDGFEPDVVS 82 (330)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~ 82 (330)
+.+.+++++|..+++++.+. .. .++...|..++.. ....+..+.+. +.++.+... +.+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~--~~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK--QARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--THHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--CCCchh
Confidence 45789999999999998763 22 2333444444322 22233344444 666666543 112122
Q ss_pred ------HHHHHHHHhccCcHHHHHHHHHHHHhc--CCCC---ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCC-C--
Q 037620 83 ------YGIMINAHCSAKRYDEAVELFREMEAT--NCKP---SPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFE-P-- 148 (330)
Q Consensus 83 ------~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-- 148 (330)
+......+...|++++|...|++..+. ..+. ...++..+..+|...|+++.|...+.+..+.... +
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 223566788899999999999998764 1111 3478889999999999999999999988654111 1
Q ss_pred ---ChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCC-Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---CCC
Q 037620 149 ---EAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIG-PN----TRTYDIVLHHLIKAGRTEEAYSVFKRMSRK---PGT 217 (330)
Q Consensus 149 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~ 217 (330)
...+++.+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+. .+.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 2356888899999999999999999987653111 11 247888999999999999999999987651 123
Q ss_pred -CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCCccHHHHHHHHHHHhccCC---hhHHHHHHHHHHhcCCCC
Q 037620 218 -EPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR----GVLPVMHMYSTLINSLCHEDK---LDDACKYFQEMLDIGIRP 289 (330)
Q Consensus 218 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~ 289 (330)
+....++..+...+...|++++|...+++..+. +-......+..+...+...|+ +++|+.++++.. ..+.
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--~~~~ 337 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--LYAD 337 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--CHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--CHHH
Confidence 334567889999999999999999999987653 112123345678888899999 777777777662 1122
Q ss_pred ChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 290 PGQLFSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 290 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
....+..+...|...|++++|...+++..+...
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 345677889999999999999999998876443
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.67 E-value=5.4e-15 Score=124.76 Aligned_cols=212 Identities=8% Similarity=-0.013 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcH-HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHH
Q 037620 96 YDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRL-SEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMD 174 (330)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 174 (330)
+++++..+++..... +.+...+..+...+...|++ ++|.+.|++..+.. +.+...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444555555544433 34556666666666666666 66666666665553 3345566666666666666666666666
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhC--------CCH
Q 037620 175 EMRKCGIGPNTRTYDIVLHHLIKA---------GRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYN--------AQV 237 (330)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~ 237 (330)
+..+.. |+...+..+...+... |++++|...+++..+. .+.+...|..+..+|... |++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 666542 4455566666666666 6666666666666541 223445566666666666 666
Q ss_pred HHHHHHHHHHHhCCCC--ccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHH
Q 037620 238 DMAMRIWDEMKARGVL--PVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLA 314 (330)
Q Consensus 238 ~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 314 (330)
++|...|++..+.... -+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666655330 255566666666666677777777666666543 234455566666666666666665433
No 62
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.67 E-value=2.4e-13 Score=123.09 Aligned_cols=254 Identities=12% Similarity=0.164 Sum_probs=152.0
Q ss_pred HHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhcc
Q 037620 14 NRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSA 93 (330)
Q Consensus 14 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 93 (330)
..+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++...
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhC
Confidence 3355667777888888888877531 2222333332 5566777777766442 466777777777788
Q ss_pred CcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHH
Q 037620 94 KRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMM 173 (330)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (330)
|++++|+..|.+. .+...|..++.++.+.|++++|.+++....+.. +++...+.++.+|++.+++++.....
T Consensus 1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 8888887777553 456667777777888888888888777766653 33333344777777777766433332
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 037620 174 DEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL 253 (330)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 253 (330)
. .++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++..
T Consensus 1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA~----- 1248 (1630)
T 1xi4_A 1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKAN----- 1248 (1630)
T ss_pred ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHhC-----
Confidence 1 234555666777777777777777777764 256677777777777777777776542
Q ss_pred ccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHH
Q 037620 254 PVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKI 317 (330)
Q Consensus 254 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 317 (330)
+..+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++..
T Consensus 1249 -n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1249 -STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred -CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444444444444444444443322 1223344444444555555555555555443
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.66 E-value=3.9e-14 Score=103.92 Aligned_cols=166 Identities=11% Similarity=0.046 Sum_probs=100.2
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMIN 88 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (330)
++.+|..+...+...|++++|++.|++..+.. |-+..+|..+..++.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 44556666666666666666666666666532 3355566666666666666666666666665553 224455555556
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhH
Q 037620 89 AHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIND 168 (330)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (330)
.+...++++.+...+.+..... +.+..++..+..+|.+.|++++|++.+++..+.. +.+..++..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 6666666666666666665554 4455566666666666666666666666665553 3345556666666666666666
Q ss_pred HHHHHHHHHH
Q 037620 169 AYRMMDEMRK 178 (330)
Q Consensus 169 a~~~~~~~~~ 178 (330)
|...|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666555
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.66 E-value=1.1e-14 Score=122.77 Aligned_cols=213 Identities=9% Similarity=0.000 Sum_probs=180.4
Q ss_pred hHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcH-HHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHH
Q 037620 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRY-DEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFG 139 (330)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 139 (330)
+++++..++...... +.+...+..+..++...|++ ++|++.|++..+.. +.+..+|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566777777766553 44788888999999999999 99999999999886 6678999999999999999999999999
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhh---------CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHc--------CCHH
Q 037620 140 QSKKRGFEPEAPTYNAVVGAYCWS---------MRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKA--------GRTE 202 (330)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 202 (330)
+..+. .|+...+..+...+... |++++|...+++..+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99987 46678888999999999 99999999999998864 33678889999999988 9999
Q ss_pred HHHHHHHHhhcCCCCC---CchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHH
Q 037620 203 EAYSVFKRMSRKPGTE---PTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYF 279 (330)
Q Consensus 203 ~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 279 (330)
+|...|++..+. .+ .+...|..+..+|...|++++|...|++..+.... +...+..+..++...|++++|+..+
T Consensus 239 ~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998872 22 36778899999999999999999999999887654 6677888888899999998888755
Q ss_pred HH
Q 037620 280 QE 281 (330)
Q Consensus 280 ~~ 281 (330)
.+
T Consensus 316 ~~ 317 (474)
T 4abn_A 316 GK 317 (474)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 65
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=9.5e-16 Score=122.22 Aligned_cols=247 Identities=11% Similarity=0.063 Sum_probs=118.6
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhC-------CCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc------C
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDD-------GFEPDVVSYGIMINAHCSAKRYDEAVELFREMEAT------N 110 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 110 (330)
+..++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3455666666677777777777777766652 11223455566666666667777777666666543 1
Q ss_pred -CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc------CC-CCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCC
Q 037620 111 -CKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR------GF-EPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIG 182 (330)
Q Consensus 111 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 182 (330)
.+....++..+...|...|++++|...+.++.+. +. +.....+..+...+...|++++|...+++.....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-- 183 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY-- 183 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH--
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--
Confidence 1223445555666666666666666666655443 11 1122334444555555555555555555444320
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC-------CCc-
Q 037620 183 PNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG-------VLP- 254 (330)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~- 254 (330)
+.... ...+....++..+...+...|++++|...++++.+.. ..+
T Consensus 184 --------------------------~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 184 --------------------------QTKLG-PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp --------------------------HHTSC-TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred --------------------------HHHhC-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 00000 0011112234444444555555555555554444310 000
Q ss_pred ------cHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhc
Q 037620 255 ------VMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKL 320 (330)
Q Consensus 255 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (330)
....+..+...+...+.+.++...++...... +....++..+..+|.+.|++++|.+++++..+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 11122223333344555566666666655422 234556777777788888888888888777654
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.65 E-value=1e-13 Score=101.68 Aligned_cols=166 Identities=11% Similarity=0.047 Sum_probs=80.3
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLIN 123 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (330)
++..|..+...+...|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 34445555555555555555555555555443 2244445555555555555555555555554443 334444444445
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHH
Q 037620 124 GLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEE 203 (330)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (330)
.+...++++.+...+.+..+.. +.+...+..+..++.+.|++++|+..+++..+.. +.+..++..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 5555555555555555544442 2234444444445555555555555555444432 1233444444444445555555
Q ss_pred HHHHHHHhhc
Q 037620 204 AYSVFKRMSR 213 (330)
Q Consensus 204 a~~~~~~~~~ 213 (330)
|...|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555444443
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.63 E-value=3.2e-15 Score=119.19 Aligned_cols=172 Identities=11% Similarity=0.057 Sum_probs=138.4
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhC-------CCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhC-----
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKR-------RFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDD----- 74 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 74 (330)
+.+..++..+...+...|++++|..+++.+.+. ..+....++..+...+...|++++|...+++....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 345677899999999999999999999998873 22335677888999999999999999999998764
Q ss_pred -C-CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc------C-CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc-
Q 037620 75 -G-FEPDVVSYGIMINAHCSAKRYDEAVELFREMEAT------N-CKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR- 144 (330)
Q Consensus 75 -~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 144 (330)
+ .+....++..+...+...|++++|...+++..+. + .+....++..+...+...|++++|.++++++.+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1 1234567888999999999999999999998764 2 1334567888999999999999999999998764
Q ss_pred -----CC-CCChhhHHHHHHHHHhhCChhHHHHHHHHHHH
Q 037620 145 -----GF-EPEAPTYNAVVGAYCWSMRINDAYRMMDEMRK 178 (330)
Q Consensus 145 -----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (330)
+. +....++..+...+...|++++|...++++..
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 22345677888889999999999999988875
No 68
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.63 E-value=2.6e-12 Score=116.62 Aligned_cols=263 Identities=13% Similarity=0.113 Sum_probs=132.9
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 037620 11 PDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAH 90 (330)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (330)
.+|..+..++...|++++|++.|... -|...|..++..+.+.|++++|.+.+....+.. ++....+.++.+|
T Consensus 1106 ~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1106 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 1177 (1630)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHH
Confidence 34444444444444444444444322 134444444444444444444444444444332 1111122244444
Q ss_pred hccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHH
Q 037620 91 CSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAY 170 (330)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (330)
++.+++++...+ .. .++...|..+...|...|++++|..+|..+ ..|..+..++.+.|++++|.
T Consensus 1178 AKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A 1178 AKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred HhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHH
Confidence 444444422211 11 223333444455555555555555555442 24455555555555555555
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 037620 171 RMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR 250 (330)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 250 (330)
+.+++. .+..+|..+..+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++.....
T Consensus 1242 EaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1242 DGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred HHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 555443 133455555555555555555555444321 24445667777788888888888888776655
Q ss_pred CCCccHHHHHHHHHHHhc--cCChhHHHHHHHHHHhcCCCC------ChhhHHHHHHHHHhcCchHHHHH
Q 037620 251 GVLPVMHMYSTLINSLCH--EDKLDDACKYFQEMLDIGIRP------PGQLFSNLKQALRDEGMEETAVV 312 (330)
Q Consensus 251 ~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~ 312 (330)
. +-....|..+...|++ -++..++.++|..-. ++++ +...|..++..|.+.|+++.|..
T Consensus 1310 e-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1310 E-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred C-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4 2244556555555554 334444555444332 2222 45678888888888888888873
No 69
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.62 E-value=3.9e-13 Score=110.31 Aligned_cols=313 Identities=12% Similarity=0.008 Sum_probs=215.6
Q ss_pred CCCChhhHHHHHHHH--HccCChHHHHHHHHHHhhC--CC--CCChHHHHHHHHH--HhhccChHHHH---------HHH
Q 037620 6 LKQELPDFNRLIDTL--CKSRHVERAQEVFDKMKKR--RF--DPDIKSYTILLEG--WGQQKNLLSMN---------EVY 68 (330)
Q Consensus 6 ~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~--~~~~~~~~~a~---------~~~ 68 (330)
+.|+..+-+.|-..| ...+++++|..+++++.+. .. .++...|-.++.. ..-.+....+. +.+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 456666667777777 7899999999999987652 12 2234444444432 11122333333 666
Q ss_pred HHHHhCCCCCCh----HHHHHHHHHHhccCcHHHHHHHHHHHHhcC--CC---CChHHHHHHHHHHhccCcHHHHHHHHH
Q 037620 69 REMKDDGFEPDV----VSYGIMINAHCSAKRYDEAVELFREMEATN--CK---PSPHIFCTLINGLGSEKRLSEALQFFG 139 (330)
Q Consensus 69 ~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~ 139 (330)
+.+.....+.+. ..+......+...|++++|+..|++..+.. ++ ....++..+..+|...|+++.|...+.
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 665432111111 123334556778999999999999987642 11 135678889999999999999999998
Q ss_pred HHHhcCC-----C-CChhhHHHHHHHHHhhCChhHHHHHHHHHHHc----CCC-CcHHHHHHHHHHHHHcCCHHHHHHHH
Q 037620 140 QSKKRGF-----E-PEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC----GIG-PNTRTYDIVLHHLIKAGRTEEAYSVF 208 (330)
Q Consensus 140 ~~~~~~~-----~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (330)
+..+... . ....+++.+...|...|++++|...+++..+. +.. ....++..+..+|...|++++|...+
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8765311 1 12456788899999999999999999887652 111 12356778889999999999999999
Q ss_pred HHhhcC---CCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC----CCccHHHHHHHHHHHhccCC---hhHHHHH
Q 037620 209 KRMSRK---PGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG----VLPVMHMYSTLINSLCHEDK---LDDACKY 278 (330)
Q Consensus 209 ~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~ 278 (330)
++.... .+.+....++..+...+...|++++|...+++..+.. -......+..+...+...++ +.+|+..
T Consensus 246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 987651 0223336678889999999999999999999987642 22223456666677778888 7777777
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhc
Q 037620 279 FQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKL 320 (330)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (330)
+++.. ..+.....+..+...|...|++++|...+++..+.
T Consensus 326 ~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 326 FEKKN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77632 11223456677889999999999999999987653
No 70
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.61 E-value=2.8e-12 Score=105.01 Aligned_cols=272 Identities=8% Similarity=-0.028 Sum_probs=194.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCCCChH----HHHHHHHHHhhccChHHHHHHHHHHHhCCC-CCC----hHHH
Q 037620 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIK----SYTILLEGWGQQKNLLSMNEVYREMKDDGF-EPD----VVSY 83 (330)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~ 83 (330)
+......+...|++++|...++.........+.. +++.+...+...|++++|...+++...... ..+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556778899999999999988743222222 456677788899999999999998875411 112 2335
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHhc----CCC--C-ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCC----Chhh
Q 037620 84 GIMINAHCSAKRYDEAVELFREMEAT----NCK--P-SPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEP----EAPT 152 (330)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~ 152 (330)
..+...+...|++++|...+++.... +.+ | ...++..+...+...|++++|...+.+........ ....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 66778899999999999999987653 211 2 34566778889999999999999999987653211 2345
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHcCCCCc-HHHHH-----HHHHHHHHcCCHHHHHHHHHHhhcCCCCCC--chHHH
Q 037620 153 YNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN-TRTYD-----IVLHHLIKAGRTEEAYSVFKRMSRKPGTEP--TVSTY 224 (330)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~ 224 (330)
+..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...++.........+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77788889999999999999998875321111 11121 233457799999999999999876221111 12246
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhC----CCCccH-HHHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 225 EIVVRMFCYNAQVDMAMRIWDEMKAR----GVLPVM-HMYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 225 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
..+...+...|++++|...+++.... +..++. ..+..+..++...|+.++|...+++...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 67788899999999999999887643 222222 3666777888999999999999998864
No 71
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.60 E-value=6.9e-14 Score=117.29 Aligned_cols=284 Identities=14% Similarity=0.070 Sum_probs=169.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccCh---HHHHHHHHHHHhCCCCCChHHHHHHHHHHh
Q 037620 15 RLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNL---LSMNEVYREMKDDGFEPDVVSYGIMINAHC 91 (330)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 91 (330)
.+...+.+.|++++|.++|+...+.| +...+..+...|...|+. ++|..+|++..+. +...+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35667788899999999999988765 344455566666667777 8888888888754 4445555665444
Q ss_pred ccC-----cHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHH---HHHHHHHHHHhcC------------------
Q 037620 92 SAK-----RYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS---EALQFFGQSKKRG------------------ 145 (330)
Q Consensus 92 ~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~------------------ 145 (330)
..+ ++++|+.+|++..+.+ .++ .+..|...|...+..+ .+.+.+......|
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g-~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANG-EGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTT-CSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCC-CHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCc
Confidence 444 7788999988888766 222 4444555554433211 1222222221111
Q ss_pred --------------CCCChhhHHHHHHHHHhhC---ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHc----CCHHHH
Q 037620 146 --------------FEPEAPTYNAVVGAYCWSM---RINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKA----GRTEEA 204 (330)
Q Consensus 146 --------------~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a 204 (330)
...++..+..+...|...| +.++|+..|+...+.|. ++...+..+...|... +++++|
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 1223446777777788788 88888888888887763 3455445666666554 688888
Q ss_pred HHHHHHhhcCCCCCCchHHHHHHHHH-H--HhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccC-----ChhHHH
Q 037620 205 YSVFKRMSRKPGTEPTVSTYEIVVRM-F--CYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHED-----KLDDAC 276 (330)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~ 276 (330)
...|++.. +-+...+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++++|.
T Consensus 237 ~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 237 QALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp HHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 88888875 2344555666665 3 45788888888888888776 4556777777666 45 888888
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHh----cCchHHHHHHHHHHHhcCC
Q 037620 277 KYFQEMLDIGIRPPGQLFSNLKQALRD----EGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 322 (330)
.+|++.. .-+...+..+...|.. ..++++|..++++..+.|.
T Consensus 308 ~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 308 AHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 8888876 3356667777777766 3488889999888877665
No 72
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.60 E-value=1.3e-12 Score=107.05 Aligned_cols=273 Identities=10% Similarity=-0.000 Sum_probs=194.4
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHHhCCCCCChH----HHHHHHHHHhccCcHHHHHHHHHHHHhcCC-CCC----hHHH
Q 037620 48 YTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVV----SYGIMINAHCSAKRYDEAVELFREMEATNC-KPS----PHIF 118 (330)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~ 118 (330)
.......+...|++++|...+++........+.. ++..+...+...|++++|.+.+++...... ..+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3344556778999999999999988764222222 456677788899999999999998765320 111 2345
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHhc----CCC--C-ChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCC--C--cHHH
Q 037620 119 CTLINGLGSEKRLSEALQFFGQSKKR----GFE--P-EAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIG--P--NTRT 187 (330)
Q Consensus 119 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~~ 187 (330)
..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 67788899999999999999887653 221 2 2345667888899999999999999998764322 1 2356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCc-hHHHH----HHHHHHHhCCCHHHHHHHHHHHHhCCCCc---cHHHH
Q 037620 188 YDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPT-VSTYE----IVVRMFCYNAQVDMAMRIWDEMKARGVLP---VMHMY 259 (330)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~ 259 (330)
+..+...+...|++++|...+++.......... ..... ..+..+...|++++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 778888899999999999999987642111111 11111 23345779999999999999887643221 12346
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhc----CCCCCh-hhHHHHHHHHHhcCchHHHHHHHHHHHhc
Q 037620 260 STLINSLCHEDKLDDACKYFQEMLDI----GIRPPG-QLFSNLKQALRDEGMEETAVVLAQKIDKL 320 (330)
Q Consensus 260 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (330)
..+...+...|++++|...+++.... +..++. ..+..+..++...|+.++|...+++....
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 67788899999999999999988642 211122 36667788899999999999999887643
No 73
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.59 E-value=1.5e-12 Score=109.18 Aligned_cols=188 Identities=10% Similarity=0.050 Sum_probs=83.0
Q ss_pred HHHHHHHHHhccC---cHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhh----CChhHHHHHHHHHHHcCCCCcHHHHH
Q 037620 117 IFCTLINGLGSEK---RLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWS----MRINDAYRMMDEMRKCGIGPNTRTYD 189 (330)
Q Consensus 117 ~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~ 189 (330)
.+..|...|...| +.++|++.|.+..+.| +++...+..+...|... +++++|...|+... .| +...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHH
Confidence 4444555555555 5555555555555554 22333333444444333 35555555555544 22 333333
Q ss_pred HHHHH-H--HHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCC-----CHHHHHHHHHHHHhCCCCccHHHHHH
Q 037620 190 IVLHH-L--IKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNA-----QVDMAMRIWDEMKARGVLPVMHMYST 261 (330)
Q Consensus 190 ~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ 261 (330)
.+... + ...+++++|...|++..+ .+ +...+..|...|. .| ++++|...|++.. .| ++..+..
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~ 323 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYY 323 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHH
Confidence 33333 2 234555555555555544 12 3333444444443 22 5555555555544 21 3334444
Q ss_pred HHHHHhc----cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCchHHHHHHHHHHHhcC
Q 037620 262 LINSLCH----EDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRD----EGMEETAVVLAQKIDKLR 321 (330)
Q Consensus 262 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 321 (330)
+...|.. ..++++|..+|++..+.| +......+...|.. ..++++|..+++...+.|
T Consensus 324 Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 324 LGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 4444433 225555555555555433 12223333333332 234555555555444443
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.58 E-value=1.4e-13 Score=113.27 Aligned_cols=231 Identities=10% Similarity=0.050 Sum_probs=176.5
Q ss_pred HHHHHhhccChHHHHHHHHHHHhC----CCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--C----CCChHHHH
Q 037620 51 LLEGWGQQKNLLSMNEVYREMKDD----GFEP-DVVSYGIMINAHCSAKRYDEAVELFREMEATN--C----KPSPHIFC 119 (330)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 119 (330)
....+...|++++|...|++..+. +-.+ ...++..+..++...|+++.|...+++..+.. . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556678899999999999999865 1111 34678889999999999999999999987541 1 11246788
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCCC-C----ChhhHHHHHHHHHhhCChhHHHHHHHHHHHc----CC-CCcHHHHH
Q 037620 120 TLINGLGSEKRLSEALQFFGQSKKRGFE-P----EAPTYNAVVGAYCWSMRINDAYRMMDEMRKC----GI-GPNTRTYD 189 (330)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 189 (330)
.+..+|...|++++|...+.+..+.... + ...++..+..+|...|++++|...+++.... +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8899999999999999999988754211 1 1247888999999999999999999988762 22 33467788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCC---CCCCchHHHHHHHHHHHhCCC---HHHHHHHHHHHHhCCCCc-cHHHHHHH
Q 037620 190 IVLHHLIKAGRTEEAYSVFKRMSRKP---GTEPTVSTYEIVVRMFCYNAQ---VDMAMRIWDEMKARGVLP-VMHMYSTL 262 (330)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~l 262 (330)
.+...+...|++++|...+++..... +.+.....+..+...+...|+ +++|..++++. +..| ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 99999999999999999999876511 111222335678888888998 77777777665 2222 34567788
Q ss_pred HHHHhccCChhHHHHHHHHHHh
Q 037620 263 INSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 263 ~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
...|...|++++|...+++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999999875
No 75
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.58 E-value=1.2e-11 Score=106.18 Aligned_cols=308 Identities=12% Similarity=0.123 Sum_probs=224.0
Q ss_pred ChhhHHHHHHHHHc---------cCChHHHHHHHHHHhhCCCCCChHHHHHHHHHH-------------hhccChHHHHH
Q 037620 9 ELPDFNRLIDTLCK---------SRHVERAQEVFDKMKKRRFDPDIKSYTILLEGW-------------GQQKNLLSMNE 66 (330)
Q Consensus 9 ~~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~a~~ 66 (330)
+...|...+....+ .|+++.|..+|++..+....+....|....... ...+++..|..
T Consensus 120 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~ 199 (530)
T 2ooe_A 120 SYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARR 199 (530)
T ss_dssp CHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHH
Confidence 45667777776654 789999999999998831111123443322211 13456777777
Q ss_pred HHHHH------HhCC---CCCC--------hHHHHHHHHHHhcc----CcH----HHHHHHHHHHHhcCCCCChHHHHHH
Q 037620 67 VYREM------KDDG---FEPD--------VVSYGIMINAHCSA----KRY----DEAVELFREMEATNCKPSPHIFCTL 121 (330)
Q Consensus 67 ~~~~~------~~~~---~~~~--------~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l 121 (330)
++... .+.. ++|+ ...|...+...... ++. .++..+|++..... |.++..|..+
T Consensus 200 ~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~ 278 (530)
T 2ooe_A 200 VAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEA 278 (530)
T ss_dssp HHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 77653 2221 2443 24666665443322 232 47888999998875 6788899998
Q ss_pred HHHHhc-------cCcHH-------HHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCc--H
Q 037620 122 INGLGS-------EKRLS-------EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN--T 185 (330)
Q Consensus 122 ~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 185 (330)
+..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ .
T Consensus 279 ~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 356 (530)
T 2ooe_A 279 AQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPT 356 (530)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHH
T ss_pred HHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCch
Confidence 888875 68877 89999999987323456888999999999999999999999999985 343 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHH-HHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 037620 186 RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRM-FCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLIN 264 (330)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 264 (330)
..|...+..+.+.|++++|..+|++..+.... +...|...+.. +...|++++|..+|+...+.... ++..|..++.
T Consensus 357 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~--~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~ 433 (530)
T 2ooe_A 357 LVYIQYMKFARRAEGIKSGRMIFKKAREDART--RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYID 433 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC--CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC--chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 58888999999999999999999999874222 23333332222 34689999999999998876433 6788999999
Q ss_pred HHhccCChhHHHHHHHHHHhcCC-CCC--hhhHHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 265 SLCHEDKLDDACKYFQEMLDIGI-RPP--GQLFSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 265 ~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
.+.+.|+.++|..+|++.+..+. .|+ ...|...+......|+.+.+..+.+++.+.-+
T Consensus 434 ~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 434 YLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 99999999999999999998642 222 34777778888889999999999988876544
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.56 E-value=9.6e-13 Score=96.30 Aligned_cols=163 Identities=15% Similarity=0.086 Sum_probs=91.0
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHh
Q 037620 12 DFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHC 91 (330)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 91 (330)
.|..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 35555556666666666666666655532 3345555556666666666666666666665542 234555555555666
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHH
Q 037620 92 SAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYR 171 (330)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (330)
..|++++|.+.++++.... +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666655543 4445555555555555666666666655555542 2334455555555555555555555
Q ss_pred HHHHHHH
Q 037620 172 MMDEMRK 178 (330)
Q Consensus 172 ~~~~~~~ 178 (330)
.++...+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.54 E-value=5.6e-13 Score=117.08 Aligned_cols=167 Identities=14% Similarity=0.057 Sum_probs=141.6
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHH
Q 037620 8 QELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMI 87 (330)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (330)
-++.+|+.+...+.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|+..|++.++.. +-+...|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 346779999999999999999999999988753 3467888899999999999999999999988874 33678888899
Q ss_pred HHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChh
Q 037620 88 NAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIN 167 (330)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (330)
.++...|++++|++.|++..+.+ +-+..+|..+..+|.+.|++++|++.|++..+.. +.+...+..+..++...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999988876 6678889999999999999999999999988874 446778888999999999999
Q ss_pred HHHHHHHHHHH
Q 037620 168 DAYRMMDEMRK 178 (330)
Q Consensus 168 ~a~~~~~~~~~ 178 (330)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98888887654
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.54 E-value=2.1e-12 Score=94.44 Aligned_cols=162 Identities=13% Similarity=-0.007 Sum_probs=85.8
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHh
Q 037620 47 SYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLG 126 (330)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (330)
.|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 44455555566666666666666655442 2245555555556666666666666666655543 444555555555555
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 037620 127 SEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYS 206 (330)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 206 (330)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 5556666555555555442 2344444555555555555555555555554432 1233444444455555555555555
Q ss_pred HHHHhh
Q 037620 207 VFKRMS 212 (330)
Q Consensus 207 ~~~~~~ 212 (330)
.++...
T Consensus 166 ~~~~~~ 171 (186)
T 3as5_A 166 HFKKAN 171 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.53 E-value=2.9e-12 Score=97.28 Aligned_cols=196 Identities=7% Similarity=-0.041 Sum_probs=153.5
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHH
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIM 86 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (330)
+.|+..+......+...|++++|+..|+...+...+++...+..+..++...|++++|++.|++..+.. +.+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 346688889999999999999999999999986533778888889999999999999999999999875 3367888999
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCCCCCh-------HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCC--ChhhHHHHH
Q 037620 87 INAHCSAKRYDEAVELFREMEATNCKPSP-------HIFCTLINGLGSEKRLSEALQFFGQSKKRGFEP--EAPTYNAVV 157 (330)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 157 (330)
..++...|++++|+..+++..+.. |.+. .+|..+...+...|++++|.+.++++.+.. +. +...+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHH
Confidence 999999999999999999999876 5555 568888889999999999999999998873 22 356777777
Q ss_pred HHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 158 GAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
.+|...|+ ..++.+...+ ..+...+.... ....+.+++|...+++..+
T Consensus 161 ~~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 161 VLFYNNGA-----DVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHHHH-----HHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 77765543 3344544432 22344444333 2345668999999999886
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.53 E-value=8.8e-13 Score=115.84 Aligned_cols=168 Identities=14% Similarity=0.040 Sum_probs=149.8
Q ss_pred CCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHH
Q 037620 42 DPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTL 121 (330)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (330)
|-+..+|+.|...+.+.|++++|++.|++.++.. +-+..+|..+..++.+.|++++|+..|++.++.+ +-+..+|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3356889999999999999999999999999874 3367889999999999999999999999999887 6778999999
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCH
Q 037620 122 INGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRT 201 (330)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (330)
..+|...|++++|++.|++..+.. +.+...++.+..+|...|++++|+..|++..+... -+...+..+..++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccH
Confidence 999999999999999999999874 45678999999999999999999999999998643 3678899999999999999
Q ss_pred HHHHHHHHHhhc
Q 037620 202 EEAYSVFKRMSR 213 (330)
Q Consensus 202 ~~a~~~~~~~~~ 213 (330)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998887654
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.51 E-value=1.1e-11 Score=94.01 Aligned_cols=100 Identities=17% Similarity=0.021 Sum_probs=50.9
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLIN 123 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (330)
|+..+......+...|++++|+..|++..+...+++...+..+..++...|++++|++.|++..+.. +.+..++..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 3444555555555555555555555555554322344444445555555555555555555555443 334444555555
Q ss_pred HHhccCcHHHHHHHHHHHHhc
Q 037620 124 GLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~ 144 (330)
+|...|++++|.+.+++..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~ 105 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA 105 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH
Confidence 555555555555555555444
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.48 E-value=9.4e-13 Score=103.21 Aligned_cols=229 Identities=13% Similarity=0.102 Sum_probs=158.4
Q ss_pred hccCcHHHHHHHHHHHHh-------cCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc------CC-CCChhhHHHH
Q 037620 91 CSAKRYDEAVELFREMEA-------TNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR------GF-EPEAPTYNAV 156 (330)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 156 (330)
...|++++|+..|++..+ ...+....++..+...|...|++++|...+.++.+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345666666666666544 232445778889999999999999999999998764 21 2245678889
Q ss_pred HHHHHhhCChhHHHHHHHHHHHc------C-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC------CCCCCchHH
Q 037620 157 VGAYCWSMRINDAYRMMDEMRKC------G-IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRK------PGTEPTVST 223 (330)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~ 223 (330)
...|...|++++|...+++.... . .+....++..+...+...|++++|...+++..+. ...+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1 1224567888899999999999999999998762 112223567
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhC-------CCCc-cHHHHHHHHHHHhccCChhHHHH------HHHHHHhcCCCC
Q 037620 224 YEIVVRMFCYNAQVDMAMRIWDEMKAR-------GVLP-VMHMYSTLINSLCHEDKLDDACK------YFQEMLDIGIRP 289 (330)
Q Consensus 224 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~a~~------~~~~~~~~~~~~ 289 (330)
+..+...+...|++++|...+++..+. ...+ ....+..+...+...+....+.. .++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999988763 1112 22234334334443333333222 2221111 1112
Q ss_pred ChhhHHHHHHHHHhcCchHHHHHHHHHHHhc
Q 037620 290 PGQLFSNLKQALRDEGMEETAVVLAQKIDKL 320 (330)
Q Consensus 290 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (330)
...++..+...|...|++++|..++++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457788899999999999999999988764
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.48 E-value=1.1e-11 Score=101.66 Aligned_cols=230 Identities=10% Similarity=0.023 Sum_probs=173.9
Q ss_pred HHHHHhhccChHHHHHHHHHHHhCCC-CC----ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--CC----CChHHHH
Q 037620 51 LLEGWGQQKNLLSMNEVYREMKDDGF-EP----DVVSYGIMINAHCSAKRYDEAVELFREMEATN--CK----PSPHIFC 119 (330)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~~~ 119 (330)
....+...|++++|+..|++..+... .+ ...++..+..++...|+++.|...+++..+.. .. ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44556789999999999999886511 12 24577888899999999999999999876531 11 1256788
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHhc----CCC-CChhhHHHHHHHHHhhCChhHHHHHHHHHHH-----cCCCCcHHHHH
Q 037620 120 TLINGLGSEKRLSEALQFFGQSKKR----GFE-PEAPTYNAVVGAYCWSMRINDAYRMMDEMRK-----CGIGPNTRTYD 189 (330)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 189 (330)
.+..+|...|++++|.+.+.+..+. +.. ....++..+..+|...|++++|...+++... .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 8999999999999999999887653 111 1234678889999999999999999998876 32 33467888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCC---CCCchHHHHHHHHHHHhCCC---HHHHHHHHHHHHhCCCCc-cHHHHHHH
Q 037620 190 IVLHHLIKAGRTEEAYSVFKRMSRKPG---TEPTVSTYEIVVRMFCYNAQ---VDMAMRIWDEMKARGVLP-VMHMYSTL 262 (330)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~l 262 (330)
.+...+.+.|++++|...+++..+... .+.....+..+...+...++ +.+|...+++ .+..| ....+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHH
Confidence 899999999999999999998775222 22233456666677777888 7777777766 22222 33466778
Q ss_pred HHHHhccCChhHHHHHHHHHHh
Q 037620 263 INSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 263 ~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
...|...|++++|...+++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999998864
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.48 E-value=8.7e-13 Score=103.41 Aligned_cols=228 Identities=11% Similarity=0.041 Sum_probs=160.6
Q ss_pred hhccChHHHHHHHHHHHhC-------CCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc------C-CCCChHHHHHH
Q 037620 56 GQQKNLLSMNEVYREMKDD-------GFEPDVVSYGIMINAHCSAKRYDEAVELFREMEAT------N-CKPSPHIFCTL 121 (330)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 121 (330)
...|++++|+..+++..+. ..+....++..+..++...|++++|...+++..+. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777776652 22334677888999999999999999999998754 2 23456788899
Q ss_pred HHHHhccCcHHHHHHHHHHHHhc------C-CCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHc------CCCC-cHHH
Q 037620 122 INGLGSEKRLSEALQFFGQSKKR------G-FEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC------GIGP-NTRT 187 (330)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~ 187 (330)
..+|...|++++|.+.+.++.+. . .+....++..+...+...|++++|...+++..+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998765 1 1234567888999999999999999999998764 1122 3567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcC------CCCCCc-hHHHHHHHHHHHhCCCHHHHH------HHHHHHHhCCCCc
Q 037620 188 YDIVLHHLIKAGRTEEAYSVFKRMSRK------PGTEPT-VSTYEIVVRMFCYNAQVDMAM------RIWDEMKARGVLP 254 (330)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~-~~~~~~l~~~~~~~~~~~~a~------~~~~~~~~~~~~~ 254 (330)
+..+...+...|++++|...+++..+. ....+. ...+..+...+...+....+. ..++.... ....
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999998751 011222 233334443333333322222 22222111 1122
Q ss_pred cHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 255 VMHMYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 255 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
...++..+...|...|++++|..++++.++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456788899999999999999999999875
No 85
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.43 E-value=3.2e-10 Score=88.19 Aligned_cols=244 Identities=10% Similarity=0.039 Sum_probs=166.4
Q ss_pred HHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHH
Q 037620 18 DTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYD 97 (330)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 97 (330)
+-..-.|++..++.-...+.. ......-..+.+++...|+++.. ....|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence 444557888888874333221 11223334455777777877642 12244444555444443 322
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhhCChhHHHHHHHHH
Q 037620 98 EAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGF-EPEAPTYNAVVGAYCWSMRINDAYRMMDEM 176 (330)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (330)
|+..|++..+.+ +++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 778888877765 56666667888999999999999999999877653 236677888899999999999999999999
Q ss_pred HHcCCCC-----cHHHHHHHHHH--HHHcC--CHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 037620 177 RKCGIGP-----NTRTYDIVLHH--LIKAG--RTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEM 247 (330)
Q Consensus 177 ~~~~~~~-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 247 (330)
.+. .| +..+...+..+ ....| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 875 45 35666666666 33334 899999999998763 344223334444888999999999999877
Q ss_pred HhCC---------CCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 037620 248 KARG---------VLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 248 ~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 286 (330)
.+.. -+-++.++..+|......|+ +|.++++++.+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 6531 02366777566666666776 8889999998753
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.40 E-value=2.9e-10 Score=88.39 Aligned_cols=246 Identities=9% Similarity=0.029 Sum_probs=171.1
Q ss_pred HHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHH
Q 037620 53 EGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS 132 (330)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (330)
+-..-.|.+..++.-...+.. ........-+.+++...|++... ..-.|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence 445567889888874433321 21223333456788888876632 12234444555555444 322
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 037620 133 EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGI-GPNTRTYDIVLHHLIKAGRTEEAYSVFKRM 211 (330)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (330)
|...+++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++.|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 778888887765 45666667888999999999999999999877653 236678888999999999999999999999
Q ss_pred hcCCCCCC-----chHHHHHHHHHHH--h--CCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHH
Q 037620 212 SRKPGTEP-----TVSTYEIVVRMFC--Y--NAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEM 282 (330)
Q Consensus 212 ~~~~~~~~-----~~~~~~~l~~~~~--~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 282 (330)
.+ ..| +..+...++.++. . .+++.+|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+
T Consensus 163 ~~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 163 TN---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HH---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred Hh---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 76 455 3555566666633 2 348999999999997663 44233334444899999999999999977
Q ss_pred HhcC---------CCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCC
Q 037620 283 LDIG---------IRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKT 323 (330)
Q Consensus 283 ~~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (330)
.+.. -+.++.++..++......|+ +|.++++++.+..+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 6431 13467777677766666786 889999999887654
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.39 E-value=6.9e-11 Score=91.67 Aligned_cols=101 Identities=12% Similarity=-0.013 Sum_probs=63.4
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC---hHHHHHHHHHHhhccChHHHHHHHHHHHhCCC--CCChHHH
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPD---IKSYTILLEGWGQQKNLLSMNEVYREMKDDGF--EPDVVSY 83 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~ 83 (330)
+...+-.+...+.+.|++++|+..|+.+.+.. |.+ ...+..+..++...|++++|+..|++..+... +.....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44555666666777777777777777776632 223 45666666777777777777777777766521 1123445
Q ss_pred HHHHHHHhc--------cCcHHHHHHHHHHHHhcC
Q 037620 84 GIMINAHCS--------AKRYDEAVELFREMEATN 110 (330)
Q Consensus 84 ~~ll~~~~~--------~~~~~~a~~~~~~~~~~~ 110 (330)
..+..++.. .|++++|+..|+++.+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 556666666 677777777777766653
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.36 E-value=1.4e-10 Score=89.84 Aligned_cols=188 Identities=9% Similarity=0.005 Sum_probs=126.6
Q ss_pred CChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCC---hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCC--CCChhh
Q 037620 78 PDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPS---PHIFCTLINGLGSEKRLSEALQFFGQSKKRGF--EPEAPT 152 (330)
Q Consensus 78 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~ 152 (330)
.+...+..+...+.+.|++++|+..|+++.+.. |.+ ..++..+..+|.+.|++++|...|+++.+... +.....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 356667777788888889999999998888764 334 67778888888888888888888888887631 112345
Q ss_pred HHHHHHHHHh--------hCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHH
Q 037620 153 YNAVVGAYCW--------SMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTY 224 (330)
Q Consensus 153 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 224 (330)
+..+..++.. .|++++|...|+++...... +......+.. +..+... -...+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH-----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH-----HHHHH
Confidence 6667777777 88888888888888775321 2222222111 1111000 01124
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCc--cHHHHHHHHHHHhcc----------CChhHHHHHHHHHHhcC
Q 037620 225 EIVVRMFCYNAQVDMAMRIWDEMKARGVLP--VMHMYSTLINSLCHE----------DKLDDACKYFQEMLDIG 286 (330)
Q Consensus 225 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~ 286 (330)
..+...|...|++++|...|+++.+..+.. ....+..+..+|... |++++|...++++++..
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 566778888888888888888887754321 345667777777755 88888999998888653
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.36 E-value=9.1e-11 Score=80.77 Aligned_cols=130 Identities=16% Similarity=0.195 Sum_probs=77.0
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHh
Q 037620 12 DFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHC 91 (330)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 91 (330)
.|..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45556666666666666666666665532 3345556666666666666666666666665543 234455555666666
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 92 SAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
..|++++|.++++++.... +.+..++..+..++...|++++|...+.++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 6666666666666665543 344555555666666666666666666655543
No 90
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.36 E-value=1.2e-10 Score=86.97 Aligned_cols=124 Identities=9% Similarity=0.005 Sum_probs=60.6
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCC
Q 037620 86 MINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMR 165 (330)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (330)
+..++.+.|++++|+..|++..+.. |.+...+..+..++...|++++|...|+++.+.. +.+...+..+..+|...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 5555556666666666666665554 4455555666666666666666666666655553 3344455555555443332
Q ss_pred --hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 166 --INDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 166 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
...+...+..... ..|....+.....++...|++++|...|++..+
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2223333333221 111222223333344445555555555555543
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.36 E-value=7.4e-11 Score=93.06 Aligned_cols=211 Identities=10% Similarity=0.039 Sum_probs=151.2
Q ss_pred ChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhC----CCCCC-hHHHHHHHHHHhccCcHHHH
Q 037620 25 HVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDD----GFEPD-VVSYGIMINAHCSAKRYDEA 99 (330)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a 99 (330)
++++|...|+.. ...|...|++++|.+.|.+..+. +-+++ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 488888888776 34567789999999998887654 21222 56888899999999999999
Q ss_pred HHHHHHHHhcCC---CC--ChHHHHHHHHHHhcc-CcHHHHHHHHHHHHhcCCCC-C----hhhHHHHHHHHHhhCChhH
Q 037620 100 VELFREMEATNC---KP--SPHIFCTLINGLGSE-KRLSEALQFFGQSKKRGFEP-E----APTYNAVVGAYCWSMRIND 168 (330)
Q Consensus 100 ~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~ 168 (330)
+..|++..+... .+ ...++..+..+|... |++++|+..+++..+..... + ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999988765421 11 145788889999986 99999999999887642110 1 3468888999999999999
Q ss_pred HHHHHHHHHHcCCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCch---HHHHHHHHHHH--hCCCH
Q 037620 169 AYRMMDEMRKCGIGPNT------RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTV---STYEIVVRMFC--YNAQV 237 (330)
Q Consensus 169 a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~--~~~~~ 237 (330)
|...+++.......... ..+..+..++...|++++|...+++..+.....++. ..+..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999885433221 156778888999999999999999987622211121 23445566664 45678
Q ss_pred HHHHHHHHHHHhC
Q 037620 238 DMAMRIWDEMKAR 250 (330)
Q Consensus 238 ~~a~~~~~~~~~~ 250 (330)
++|...|+.+...
T Consensus 257 ~~A~~~~~~~~~l 269 (292)
T 1qqe_A 257 SEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHHHHTTSSCC
T ss_pred HHHHHHhccCCcc
Confidence 8888888776553
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.35 E-value=1.3e-10 Score=91.63 Aligned_cols=237 Identities=10% Similarity=0.035 Sum_probs=167.1
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHHhh--ccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHH
Q 037620 28 RAQEVFDKMKKRRFDPDIKSYTILLEGWGQ--QKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFRE 105 (330)
Q Consensus 28 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 105 (330)
+|.+++.+..+. .+++...| .++ .. .+++++|...|.+. ...|...|++++|...|++
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~~---~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 62 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KLF---SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLK 62 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HHH---SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hhc---CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 466677666663 23332223 222 22 22589999998887 3457788999999999998
Q ss_pred HHhc----CCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhh-CChhHHHHHHH
Q 037620 106 MEAT----NCKP-SPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFE-PE----APTYNAVVGAYCWS-MRINDAYRMMD 174 (330)
Q Consensus 106 ~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~-~~~~~a~~~~~ 174 (330)
..+. +-++ ...+|+.+..+|.+.|++++|+..+++..+.... .+ ..+++.+...|... |++++|+..++
T Consensus 63 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~ 142 (292)
T 1qqe_A 63 AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE 142 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 7654 2122 2578999999999999999999999988664211 01 35788899999996 99999999999
Q ss_pred HHHHcCCCC-c----HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCch-----HHHHHHHHHHHhCCCHHHHHHHH
Q 037620 175 EMRKCGIGP-N----TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTV-----STYEIVVRMFCYNAQVDMAMRIW 244 (330)
Q Consensus 175 ~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~ 244 (330)
+..+..... + ..++..+...+...|++++|...|++..+.....+.. ..+..+..++...|++++|...|
T Consensus 143 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 222 (292)
T 1qqe_A 143 LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 887632110 1 3568889999999999999999999988733222222 15677888899999999999999
Q ss_pred HHHHhCCCCc-c---HHHHHHHHHHHh--ccCChhHHHHHHHHHHh
Q 037620 245 DEMKARGVLP-V---MHMYSTLINSLC--HEDKLDDACKYFQEMLD 284 (330)
Q Consensus 245 ~~~~~~~~~~-~---~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 284 (330)
++..+..... + ...+..++.++. ..+++++|+..|+++..
T Consensus 223 ~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 223 QEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 9987653221 1 123445566664 45678888888877653
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.35 E-value=1.4e-10 Score=79.80 Aligned_cols=130 Identities=15% Similarity=0.179 Sum_probs=84.8
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHh
Q 037620 47 SYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLG 126 (330)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (330)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45566666677777777777777776653 2355666666667777777777777777766654 445566666666777
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHc
Q 037620 127 SEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179 (330)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (330)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777666553 334555666666666667777776666666553
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.34 E-value=1.1e-10 Score=87.23 Aligned_cols=175 Identities=9% Similarity=0.020 Sum_probs=133.2
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHH----------------HHHHHhhccChHHHHHHHHHHHh
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTI----------------LLEGWGQQKNLLSMNEVYREMKD 73 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~ 73 (330)
+..+-.....+...|++++|+..|+...+.. |-+...|.. +..++.+.|++++|+..|++..+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4445556667889999999999999998843 234566777 88999999999999999999998
Q ss_pred CCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCc--HHHHHHHHHHHHhcCCCCChh
Q 037620 74 DGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKR--LSEALQFFGQSKKRGFEPEAP 151 (330)
Q Consensus 74 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~ 151 (330)
.. +-+...+..+..++...|++++|+..|++..+.. |.+..++..+..+|...|+ .+.+...+...... .|...
T Consensus 83 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 158 (208)
T 3urz_A 83 KA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP--TKMQY 158 (208)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC--CHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC--CchhH
Confidence 85 3478899999999999999999999999999987 7788999999988876654 34455555555421 22233
Q ss_pred hHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHH
Q 037620 152 TYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIV 191 (330)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (330)
.+.....++...|++++|...|++..+. .|+......+
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l 196 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 4444566677789999999999999874 5665444433
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.33 E-value=1.1e-10 Score=102.90 Aligned_cols=173 Identities=7% Similarity=-0.091 Sum_probs=141.5
Q ss_pred hhccChHHHHHHHHHHH--------hCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc
Q 037620 56 GQQKNLLSMNEVYREMK--------DDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGS 127 (330)
Q Consensus 56 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (330)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|++.|+++.+.+ +.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999988 442 4467788888999999999999999999998876 6788899999999999
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 037620 128 EKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSV 207 (330)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 207 (330)
.|++++|.+.|+++.+.. +.+...+..+..++.+.|++++ ...|++..+... .+...+..+..++...|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998874 4467788899999999999999 999999988653 3677888999999999999999999
Q ss_pred HHHhhcCCCCCCc-hHHHHHHHHHHHhCCC
Q 037620 208 FKRMSRKPGTEPT-VSTYEIVVRMFCYNAQ 236 (330)
Q Consensus 208 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 236 (330)
|++..+ ..|+ ...+..+..++...+.
T Consensus 557 ~~~al~---l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPP---TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCT---TSTTHHHHHHHHHHHTC----
T ss_pred HHhhcc---cCcccHHHHHHHHHHHHccCC
Confidence 998865 3343 5567777777766554
No 96
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.32 E-value=1.5e-08 Score=88.39 Aligned_cols=117 Identities=12% Similarity=0.123 Sum_probs=80.1
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccC---hHHHHHHHHHHHhCC-CCCChHH
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN---LLSMNEVYREMKDDG-FEPDVVS 82 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~ 82 (330)
+-|...|..++..+.+.+.++.+..+|+.+... .|.+...|...+..-.+.++ ++.+..+|++..... .+|+...
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 457788888888888888899999999988874 56677888888887777787 888888888888763 1377778
Q ss_pred HHHHHHHHhccCcH--------HHHHHHHHHHHh-cCC-CC-ChHHHHHHHHH
Q 037620 83 YGIMINAHCSAKRY--------DEAVELFREMEA-TNC-KP-SPHIFCTLING 124 (330)
Q Consensus 83 ~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~ 124 (330)
|...+....+.++. +.+.++|+.... .|. .+ +...|...+..
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f 194 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHF 194 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 87777655554432 334466666543 243 33 34556555543
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.31 E-value=1.3e-10 Score=102.42 Aligned_cols=174 Identities=10% Similarity=-0.022 Sum_probs=146.8
Q ss_pred HccCChHHHHHHHHHHh--------hCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhc
Q 037620 21 CKSRHVERAQEVFDKMK--------KRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCS 92 (330)
Q Consensus 21 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (330)
...|++++|++.++... +. .+.+...+..+...+...|++++|++.|+++.+.+ +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 78899999999999998 42 35567889999999999999999999999999874 3477889999999999
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHH
Q 037620 93 AKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRM 172 (330)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (330)
.|++++|++.|++..+.. +.+...+..+..++.+.|++++ .+.|+++.+.. +.+...+..+..++.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999887 6788999999999999999999 99999999875 45678899999999999999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHcCC
Q 037620 173 MDEMRKCGIGPNTRTYDIVLHHLIKAGR 200 (330)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (330)
|++..+... .+...+..+..++...++
T Consensus 557 ~~~al~l~P-~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSR-HFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTST-THHHHHHHHHHHTC----
T ss_pred HHhhcccCc-ccHHHHHHHHHHHHccCC
Confidence 998877532 235667777777766554
No 98
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.30 E-value=3.2e-08 Score=86.28 Aligned_cols=171 Identities=10% Similarity=0.036 Sum_probs=90.0
Q ss_pred hhhHHHHHHHHHhhCChhHHH-HHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC--------CCCC-
Q 037620 150 APTYNAVVGAYCWSMRINDAY-RMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKP--------GTEP- 219 (330)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~- 219 (330)
...|...+..+...|+.++|. .+|++.... .+.+...|...+....+.|+++.|..+|+++.... ...|
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 334444444445556666664 666666654 23344455556666666677777777776665410 0012
Q ss_pred -----------chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcc-CChhHHHHHHHHHHhcCC
Q 037620 220 -----------TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHE-DKLDDACKYFQEMLDIGI 287 (330)
Q Consensus 220 -----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~ 287 (330)
...+|...+....+.|..+.|..+|.+..+....+....|...+..-.+. ++.+.|..+|+..++. .
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~ 500 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-F 500 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-H
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-C
Confidence 12245555555556666677777776666541111222332222222222 3466666666666654 2
Q ss_pred CCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCC
Q 037620 288 RPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 288 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
+.+...+...++.....|+.+.|..+|++......
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 23444455555555566666666666666655443
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.28 E-value=2e-09 Score=80.48 Aligned_cols=28 Identities=14% Similarity=0.094 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 037620 81 VSYGIMINAHCSAKRYDEAVELFREMEA 108 (330)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 108 (330)
..+..+...|...+++++|+++|++..+
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 46 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAA 46 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3333334444444444444444444433
No 100
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.28 E-value=2.4e-08 Score=78.40 Aligned_cols=222 Identities=9% Similarity=0.033 Sum_probs=145.3
Q ss_pred cCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhcc--ChHHHHHHHHHHHhCCCCCChHHHHHHHHHH----hcc---
Q 037620 23 SRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQK--NLLSMNEVYREMKDDGFEPDVVSYGIMINAH----CSA--- 93 (330)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~--- 93 (330)
....++|+.+++.++... |-+..+|+.--..+...+ ++++++++++.+.....+ +..+|+.-...+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 46 EEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcccc
Confidence 344467888888887743 335566777777777777 888888888888877533 566665544444 333
Q ss_pred CcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHH--HHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCC------
Q 037620 94 KRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS--EALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMR------ 165 (330)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 165 (330)
+++++++.+++++.+.+ +-+..+|+.-.-++.+.|.++ ++++.++++.+.. +.|...|+.-...+.+.+.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhh
Confidence 67788888888888776 667777777777777777777 7888888887765 3466667666666666555
Q ss_pred hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHH-HHHHHHHhhcCC-CCCCchHHHHHHHHHHHhCCCHHHHHHH
Q 037620 166 INDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEE-AYSVFKRMSRKP-GTEPTVSTYEIVVRMFCYNAQVDMAMRI 243 (330)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 243 (330)
++++++.++.++...+ -|...|+-+-..+.+.|+..+ +..+..++.... ....+...+..++..+.+.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 6677777777766543 366677766666666666333 444555544311 1133455666666666666777777777
Q ss_pred HHHHHh
Q 037620 244 WDEMKA 249 (330)
Q Consensus 244 ~~~~~~ 249 (330)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 776664
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.27 E-value=1.5e-10 Score=83.93 Aligned_cols=164 Identities=10% Similarity=0.019 Sum_probs=110.3
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHH-
Q 037620 11 PDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINA- 89 (330)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~- 89 (330)
..+......+...|++++|...|+...+.. |.+...+..+...+...|++++|+..+++..... |+...+..+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHH
Confidence 345566677788888888888888877632 4466778888888888888888888888876653 244333222211
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhhCChhH
Q 037620 90 HCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEP-EAPTYNAVVGAYCWSMRIND 168 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 168 (330)
+...+....|...+++..+.. |.+...+..+..++...|++++|...+.++.+....+ +...+..+...+...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 112222334677777777665 5567777778888888888888888888877764222 24467777777778888888
Q ss_pred HHHHHHHHHH
Q 037620 169 AYRMMDEMRK 178 (330)
Q Consensus 169 a~~~~~~~~~ 178 (330)
|...|++...
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777776543
No 102
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.27 E-value=1.2e-09 Score=81.70 Aligned_cols=176 Identities=9% Similarity=0.038 Sum_probs=123.3
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhC----ChhHHHHHH
Q 037620 98 EAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSM----RINDAYRMM 173 (330)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 173 (330)
+|+++|++..+.| ++..+..+...|...+++++|.++|++..+.| +...+..+...|.. + ++++|..+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4667777777654 56677778888888888888888888887765 56667777777776 6 788888888
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCCC-CchHHHHHHHHHHHh----CCCHHHHHHHH
Q 037620 174 DEMRKCGIGPNTRTYDIVLHHLIK----AGRTEEAYSVFKRMSRKPGTE-PTVSTYEIVVRMFCY----NAQVDMAMRIW 244 (330)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~ 244 (330)
++..+.+ +...+..+...|.. .+++++|..+|++..+. +.. .+...+..|...|.. .+++++|...|
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 8887754 55666777777766 67888888888887652 211 125566677777777 67788888888
Q ss_pred HHHHhCCCCccHHHHHHHHHHHhcc------CChhHHHHHHHHHHhcC
Q 037620 245 DEMKARGVLPVMHMYSTLINSLCHE------DKLDDACKYFQEMLDIG 286 (330)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~ 286 (330)
++..+.+ .+...+..|...|... .+.++|..+|++..+.|
T Consensus 153 ~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 8877651 2334566666666532 27788888888777766
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.27 E-value=4.5e-10 Score=88.28 Aligned_cols=167 Identities=9% Similarity=0.018 Sum_probs=89.8
Q ss_pred CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHH-HHH
Q 037620 112 KPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRT-YDI 190 (330)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ 190 (330)
+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.... |+... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 3344455555555566666666666666655553 2344555555666666666666666666554432 22221 112
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHHhcc
Q 037620 191 VLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLP-VMHMYSTLINSLCHE 269 (330)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 269 (330)
....+...++.++|...+++... ..+.+...+..+...+...|++++|...++++.+..... +...+..++..+...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 22224445555556666655554 123344555566666666666666666666666543321 244566666666666
Q ss_pred CChhHHHHHHHHHH
Q 037620 270 DKLDDACKYFQEML 283 (330)
Q Consensus 270 ~~~~~a~~~~~~~~ 283 (330)
|+.++|...+++.+
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 66666666665544
No 104
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.27 E-value=1.6e-08 Score=79.43 Aligned_cols=221 Identities=7% Similarity=-0.024 Sum_probs=162.7
Q ss_pred ccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC--cHHHHHHHHHHHHhcCCCCChHHHHHHHHHH----hcc---
Q 037620 58 QKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAK--RYDEAVELFREMEATNCKPSPHIFCTLINGL----GSE--- 128 (330)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 128 (330)
....++|+++++.++..+ +-+...|+.--.++...+ ++++++++++.+...+ |-+..+|+.-..++ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 46 EEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 344468999999998875 336677888777787788 8999999999998876 66777777655555 444
Q ss_pred CcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChh--HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC------
Q 037620 129 KRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIN--DAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGR------ 200 (330)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 200 (330)
+++++++.+++.+.+.. +-+..+|+.-...+.+.|.++ ++++.++.+.+.... |...|+.-...+...+.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 78889999999998874 557778877777777888888 889999999887644 66777766666666665
Q ss_pred HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHH-HHHHHHHHHHhCC--CCccHHHHHHHHHHHhccCChhHHHH
Q 037620 201 TEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVD-MAMRIWDEMKARG--VLPVMHMYSTLINSLCHEDKLDDACK 277 (330)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~ 277 (330)
++++++.++.+.. ..+-|...|+.+...+.+.|+.. .+..+..++.+.+ -..++..+..++..+.+.|+.++|.+
T Consensus 202 ~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 7788888877765 24446667777777777777643 3555666655443 12366777888888888888888888
Q ss_pred HHHHHHh
Q 037620 278 YFQEMLD 284 (330)
Q Consensus 278 ~~~~~~~ 284 (330)
+++.+.+
T Consensus 280 ~~~~l~~ 286 (306)
T 3dra_A 280 VYDLLKS 286 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8888875
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.27 E-value=7.2e-11 Score=83.16 Aligned_cols=121 Identities=10% Similarity=0.039 Sum_probs=57.8
Q ss_pred HhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHH
Q 037620 55 WGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEA 134 (330)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 134 (330)
+...|++++|+..+....... +-+...+..+...|.+.|++++|++.|++..+.+ |.+..+|..+..+|.+.|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 344455555555555544331 1122233344455555555555555555555544 44455555555555555555555
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHH-HHHHHH
Q 037620 135 LQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRM-MDEMRK 178 (330)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~ 178 (330)
...|++..+.. +.+...+..+...|.+.|+++++... +++..+
T Consensus 85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 85 VECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 55555555442 22344455555555555555443332 344444
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.27 E-value=2.2e-09 Score=81.14 Aligned_cols=192 Identities=13% Similarity=0.065 Sum_probs=118.8
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCC-C-ChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcH--HHHH
Q 037620 114 SPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFE-P-EAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNT--RTYD 189 (330)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 189 (330)
+...+..+...+.+.|++++|...|+++.+.... | ....+..+..++.+.|++++|...|+++.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455666777888899999999999998876311 1 1246777888888999999999999998875432111 2444
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 037620 190 IVLHHLIK------------------AGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG 251 (330)
Q Consensus 190 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 251 (330)
.+..++.. .|++++|...|+++.+... -+...+...... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P--~~~~a~~a~~~l----------~~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP--NSQYTTDATKRL----------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCT--TCTTHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc--CChhHHHHHHHH----------HHHHHHH----
Confidence 44555544 2445555555555544211 111111110000 0000000
Q ss_pred CCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCCCC
Q 037620 252 VLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP--PGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTPL 325 (330)
Q Consensus 252 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 325 (330)
......+...|.+.|++++|+..|+++++..... ....+..+..++.+.|++++|.+.++.+...++...
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 0011345667888999999999999998753211 125677888899999999999999998887666543
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.25 E-value=4.4e-11 Score=84.30 Aligned_cols=146 Identities=11% Similarity=-0.031 Sum_probs=116.9
Q ss_pred HHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCc
Q 037620 16 LIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKR 95 (330)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 95 (330)
|-..+...|++++|+..+....... +-+...+..+...|.+.|++++|++.|++.++.. +-+..+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 3445667789999999999887642 2245567788899999999999999999999885 3478899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHH-HHHHHhcCCCCChhhHHHHHHHHHhhCC
Q 037620 96 YDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQF-FGQSKKRGFEPEAPTYNAVVGAYCWSMR 165 (330)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (330)
+++|+..|++..+.+ |-+..++..+..+|.+.|++++|.+. +++..+.. +.++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 999999999999887 67889999999999999998776654 58888774 4466777777766666653
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.25 E-value=2e-09 Score=81.35 Aligned_cols=185 Identities=8% Similarity=-0.053 Sum_probs=120.6
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhCCC-CC-ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCCh---HHH
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRF-DP-DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDV---VSY 83 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 83 (330)
+...+..+...+.+.|++++|+..|+.+.+... .| ....+..+..++.+.|++++|+..|+++.+.... +. ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHH
Confidence 445566677788889999999999999887421 11 1356777888899999999999999998876322 22 234
Q ss_pred HHHHHHHhc------------------cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcC
Q 037620 84 GIMINAHCS------------------AKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRG 145 (330)
Q Consensus 84 ~~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (330)
..+..++.. .|++++|...|+++.+.. |-+..++....... .+...+
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~---- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH----
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH----
Confidence 444444443 456666666666666553 22332222111100 000000
Q ss_pred CCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 146 FEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN--TRTYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 146 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
......+...|.+.|++++|...|+.+.+...... ...+..+..++.+.|++++|...++.+..
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 00113456778899999999999999988642211 25678888999999999999999998876
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.25 E-value=4.3e-10 Score=88.42 Aligned_cols=167 Identities=9% Similarity=0.011 Sum_probs=130.4
Q ss_pred CCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHH-HH
Q 037620 42 DPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIF-CT 120 (330)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ 120 (330)
+.+...+..+...+...|++++|...|++..+.. +-+...+..+..++.+.|++++|...++++.... |+.... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 4456677778888889999999999999988874 3367788888899999999999999998887765 343332 23
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHHcC
Q 037620 121 LINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGP-NTRTYDIVLHHLIKAG 199 (330)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 199 (330)
....+...++.+.|...+++..... +.+...+..+...+...|++++|...+.++.+..... +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 3334667778888888888888774 5577888889999999999999999999988864332 2667888899999999
Q ss_pred CHHHHHHHHHHhh
Q 037620 200 RTEEAYSVFKRMS 212 (330)
Q Consensus 200 ~~~~a~~~~~~~~ 212 (330)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 9999888887654
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.24 E-value=3.8e-10 Score=81.85 Aligned_cols=157 Identities=7% Similarity=0.015 Sum_probs=66.9
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHH-HHhhC
Q 037620 86 MINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGA-YCWSM 164 (330)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 164 (330)
+...+...|++++|...|++..+.. |.+...+..+..++...|++++|...++++.... |+...+..+... +...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhc
Confidence 3444445555555555555544443 3344455555555555555555555555544432 222221111111 11111
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHH
Q 037620 165 RINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244 (330)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 244 (330)
....+...+++..+.. +.+...+..+..++...|++++|...|+++.+......+...+..+...+...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2223344444444432 113444444445555555555555555554432111112234444444455555555555444
Q ss_pred HH
Q 037620 245 DE 246 (330)
Q Consensus 245 ~~ 246 (330)
++
T Consensus 168 ~~ 169 (176)
T 2r5s_A 168 RR 169 (176)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.21 E-value=9.6e-10 Score=95.15 Aligned_cols=155 Identities=10% Similarity=-0.001 Sum_probs=119.5
Q ss_pred cCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHH
Q 037620 23 SRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVEL 102 (330)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 102 (330)
.|++++|++.+++..+.. +.+...|..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988743 4467889999999999999999999999999874 34678888999999999999999999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhh---CChhHHHHHHHHHHHc
Q 037620 103 FREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWS---MRINDAYRMMDEMRKC 179 (330)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 179 (330)
+++..+.. +.+...+..+..+|.+.|++++|.+.+++..+.. +.+...+..+...+... |++++|...+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998876 6678899999999999999999999999998874 44677888899999999 9999999999998886
Q ss_pred CC
Q 037620 180 GI 181 (330)
Q Consensus 180 ~~ 181 (330)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.20 E-value=9.1e-10 Score=87.48 Aligned_cols=124 Identities=13% Similarity=0.124 Sum_probs=57.0
Q ss_pred HHHhccCcHHHHHHHHHHHHhcCC---C--CChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCC---CC--ChhhHHHHH
Q 037620 88 NAHCSAKRYDEAVELFREMEATNC---K--PSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGF---EP--EAPTYNAVV 157 (330)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~ 157 (330)
..|...|++++|...|.+..+... . .-..+|..+..+|...|++++|...+++..+.-. .+ ...++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345556666666666665543210 0 0123455555555555666666665555443210 00 123344444
Q ss_pred HHHHhhCChhHHHHHHHHHHHcCCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 037620 158 GAYCWSMRINDAYRMMDEMRKCGIGPN-----TRTYDIVLHHLIKAGRTEEAYSVFKRMS 212 (330)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (330)
..|.. |++++|+..+++........+ ..++..+...|...|++++|...|++..
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44544 555555555555544211000 2334444444555555555555554443
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.19 E-value=1.4e-09 Score=94.11 Aligned_cols=164 Identities=9% Similarity=-0.052 Sum_probs=122.1
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 037620 128 EKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSV 207 (330)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 207 (330)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988764 4467889999999999999999999999998864 33678899999999999999999999
Q ss_pred HHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcc---CChhHHHHHHHHHHh
Q 037620 208 FKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHE---DKLDDACKYFQEMLD 284 (330)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 284 (330)
+++..+. .+.+...+..+..++...|++++|.+.+++..+.... +...+..+..++... |++++|...+++.++
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9998872 3345778899999999999999999999999887654 677888899999999 999999999999998
Q ss_pred cCCCCChhhHHHH
Q 037620 285 IGIRPPGQLFSNL 297 (330)
Q Consensus 285 ~~~~~~~~~~~~l 297 (330)
.+. .+...+..+
T Consensus 157 ~~p-~~~~~~~~l 168 (568)
T 2vsy_A 157 QGV-GAVEPFAFL 168 (568)
T ss_dssp HTC-CCSCHHHHT
T ss_pred cCC-cccChHHHh
Confidence 652 334444433
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.14 E-value=3e-09 Score=84.49 Aligned_cols=218 Identities=11% Similarity=0.100 Sum_probs=149.6
Q ss_pred ccCChHHHHHHHHHHhhC------CCCCCh----HHHHHHHHHHhhccChHHHHHHHHHHHhCCC---CC--ChHHHHHH
Q 037620 22 KSRHVERAQEVFDKMKKR------RFDPDI----KSYTILLEGWGQQKNLLSMNEVYREMKDDGF---EP--DVVSYGIM 86 (330)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~------~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l 86 (330)
..|++++|.+++++..+. +..++. ..|......|...|++++|...|.+..+... .+ -..+|..+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 346777787777765541 112332 2566777788899999999999988875411 11 14578888
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcC--C-CC--ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCC-----ChhhHHHH
Q 037620 87 INAHCSAKRYDEAVELFREMEATN--C-KP--SPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEP-----EAPTYNAV 156 (330)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~--~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l 156 (330)
..+|...|++++|+..|++..+.. . .+ ...++..+..+|.. |++++|+..+++..+..... ...++..+
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 899999999999999999876531 0 12 24677888899988 99999999999886542111 14578888
Q ss_pred HHHHHhhCChhHHHHHHHHHHHc----CCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCch---HHHHHHH
Q 037620 157 VGAYCWSMRINDAYRMMDEMRKC----GIGPN-TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTV---STYEIVV 228 (330)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~ 228 (330)
...|...|++++|...+++.... +..+. ...+..+..++...|++++|...|++.. .....++. .....++
T Consensus 162 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~ 240 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLL 240 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHH
Confidence 99999999999999999988763 11111 2356667777888899999999999886 32222222 2234445
Q ss_pred HHHHhCCCHHHHHH
Q 037620 229 RMFCYNAQVDMAMR 242 (330)
Q Consensus 229 ~~~~~~~~~~~a~~ 242 (330)
.++ ..|+.+.+..
T Consensus 241 ~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 241 QAY-DEQDEEQLLR 253 (307)
T ss_dssp HHH-HTTCHHHHHH
T ss_pred HHH-HhcCHHHHHH
Confidence 544 4566655555
No 115
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.13 E-value=6.2e-07 Score=75.79 Aligned_cols=298 Identities=10% Similarity=0.009 Sum_probs=166.7
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccC-hHHHHHHHHHHHhC-CC-CCChHHH
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN-LLSMNEVYREMKDD-GF-EPDVVSY 83 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~ 83 (330)
.--..+|...+..+-. |+++.+..+|++.... .|++..|...+....+.++ .+....+|+..... |. ..+...|
T Consensus 12 ~~aR~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW 88 (493)
T 2uy1_A 12 SSPSAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLY 88 (493)
T ss_dssp CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHH
T ss_pred HHHHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHH
Confidence 3344567777766655 7788888888887773 3577777777766655553 34556667666653 32 2356677
Q ss_pred HHHHHHHh----ccCcHHHHHHHHHHHHhcCCCCChHHH-----------------------------------------
Q 037620 84 GIMINAHC----SAKRYDEAVELFREMEATNCKPSPHIF----------------------------------------- 118 (330)
Q Consensus 84 ~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~----------------------------------------- 118 (330)
...+..+. ..++.+.+.++|++.+......-...|
T Consensus 89 ~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~ 168 (493)
T 2uy1_A 89 KEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIR 168 (493)
T ss_dssp HHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 76666544 235566777777777653111001111
Q ss_pred -------HHHHHHHhcc--C-----cHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCc
Q 037620 119 -------CTLINGLGSE--K-----RLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN 184 (330)
Q Consensus 119 -------~~l~~~~~~~--~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 184 (330)
...+..-... + ..+.+..+|+++.... +.+...|...+..+.+.|+++.|..++++.... +.+
T Consensus 169 ~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~ 245 (493)
T 2uy1_A 169 GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDG 245 (493)
T ss_dssp TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCS
T ss_pred hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCc
Confidence 1111110000 0 0233455666665542 345666776777777778888888888877765 222
Q ss_pred HHH----------------------------------------HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHH
Q 037620 185 TRT----------------------------------------YDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTY 224 (330)
Q Consensus 185 ~~~----------------------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 224 (330)
... |...+....+.++.+.|..+|++. ..++ .+...|
T Consensus 246 ~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~ 322 (493)
T 2uy1_A 246 MFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVF 322 (493)
T ss_dssp SHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHH
Confidence 211 222222233455677777777777 3222 233333
Q ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 037620 225 EIVVRMFCYNA-QVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRD 303 (330)
Q Consensus 225 ~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 303 (330)
...+..-...+ +.+.|..+|+...+.-.. ++..+...++.....|+.+.|..+|+++. .....|...+..-..
T Consensus 323 i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~ 396 (493)
T 2uy1_A 323 IYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFM 396 (493)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 32222222222 577788888777664322 33445556666667777777887777762 245566666665566
Q ss_pred cCchHHHHHHHHHHHh
Q 037620 304 EGMEETAVVLAQKIDK 319 (330)
Q Consensus 304 ~g~~~~a~~~~~~~~~ 319 (330)
.|+.+.+.+++++..+
T Consensus 397 ~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 397 VGSMELFRELVDQKMD 412 (493)
T ss_dssp HSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7888888777766653
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.13 E-value=8.3e-09 Score=77.13 Aligned_cols=128 Identities=10% Similarity=0.070 Sum_probs=98.7
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHh
Q 037620 12 DFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHC 91 (330)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 91 (330)
.+..+...+...|++++|+..|+... .|+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 45566677778888888888887764 4577788888888888888888888888887764 346677888888888
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCCh----------------HHHHHHHHHHhccCcHHHHHHHHHHHHhcC
Q 037620 92 SAKRYDEAVELFREMEATNCKPSP----------------HIFCTLINGLGSEKRLSEALQFFGQSKKRG 145 (330)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (330)
..|++++|++.|++..+.. +.+. ..+..+..+|...|++++|...+++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888887754 3222 677777888888888888888888887763
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.10 E-value=2.4e-07 Score=72.91 Aligned_cols=91 Identities=10% Similarity=0.083 Sum_probs=46.1
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCC-CCCh----HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCC-C----hhhHHHH
Q 037620 87 INAHCSAKRYDEAVELFREMEATNC-KPSP----HIFCTLINGLGSEKRLSEALQFFGQSKKRGFEP-E----APTYNAV 156 (330)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l 156 (330)
+..+...|++++|..++++...... .|+. ..+..+...+...+++++|...+.++.+..... + ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4555666666666666666655321 1111 122234455555556666666666665532111 1 1135555
Q ss_pred HHHHHhhCChhHHHHHHHHHH
Q 037620 157 VGAYCWSMRINDAYRMMDEMR 177 (330)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~ 177 (330)
...|...|++++|...+++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555554
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.10 E-value=3.9e-07 Score=72.37 Aligned_cols=182 Identities=8% Similarity=-0.018 Sum_probs=127.4
Q ss_pred HHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhcc-ChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhcc
Q 037620 15 RLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQK-NLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSA 93 (330)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 93 (330)
.+-....+.+..++|+++++.++... |-+..+|+.--..+...| .+++++++++.+.....+ +..+|+.-..++...
T Consensus 59 ~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l 136 (349)
T 3q7a_A 59 YFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRI 136 (349)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHh
Confidence 33333444556678999998888853 445667777766776777 588999999998887533 777787766666655
Q ss_pred -C-cHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHH--------HHHHHHHHHHhcCCCCChhhHHHHHHHHHhh
Q 037620 94 -K-RYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLS--------EALQFFGQSKKRGFEPEAPTYNAVVGAYCWS 163 (330)
Q Consensus 94 -~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (330)
+ ++++++++++++.+.. +-+..+|+.-.-++.+.|.++ ++++.++++.+.. +.|...|+.....+.+.
T Consensus 137 ~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp CCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTS
T ss_pred cCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 5 7788888898888876 677788877666666666665 7888888888775 45777777777777766
Q ss_pred CC-------hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCH
Q 037620 164 MR-------INDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRT 201 (330)
Q Consensus 164 ~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (330)
++ ++++++.+++.+...+ -|...|+-+-..+.+.|..
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCC
T ss_pred cccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCC
Confidence 65 5677777777776543 3666676666555555543
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.10 E-value=1.3e-08 Score=76.15 Aligned_cols=128 Identities=9% Similarity=-0.076 Sum_probs=105.7
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHh
Q 037620 47 SYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLG 126 (330)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (330)
.+..+...+...|++++|+..|++.. .|+...+..+..++...|++++|+..|++..+.. +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 35556677888999999999998774 5678889999999999999999999999988876 667888999999999
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCCh----------------hhHHHHHHHHHhhCChhHHHHHHHHHHHcC
Q 037620 127 SEKRLSEALQFFGQSKKRGFEPEA----------------PTYNAVVGAYCWSMRINDAYRMMDEMRKCG 180 (330)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (330)
..|++++|.+.+++..+.. +.+. ..+..+..++...|++++|...++...+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999988763 2222 567778888888889999988888887754
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.06 E-value=1.7e-07 Score=73.79 Aligned_cols=162 Identities=13% Similarity=0.116 Sum_probs=97.3
Q ss_pred HHHHHhhCChhHHHHHHHHHHHcCC-CCcH----HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCc----hHHHHHH
Q 037620 157 VGAYCWSMRINDAYRMMDEMRKCGI-GPNT----RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPT----VSTYEIV 227 (330)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l 227 (330)
+..+...|++++|...+++...... .|+. ..+..+...+...+++++|...+++........++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4556666777777777776665321 1111 12223445555566777777777776652112222 2256777
Q ss_pred HHHHHhCCCHHHHHHHHHHHHh----C-CCCc-cHHHHHHHHHHHhccCChhHHHHHHHHHHhc----CCCCC-hhhHHH
Q 037620 228 VRMFCYNAQVDMAMRIWDEMKA----R-GVLP-VMHMYSTLINSLCHEDKLDDACKYFQEMLDI----GIRPP-GQLFSN 296 (330)
Q Consensus 228 ~~~~~~~~~~~~a~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ 296 (330)
...|...|++++|...++++.+ . +..+ ...++..+...|...|++++|+..+++.++. +..+. ..++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 7777777777777777777663 1 1111 2236677777778888888888877776642 11111 556777
Q ss_pred HHHHHHhcCc-hHHHHHHHHHHH
Q 037620 297 LKQALRDEGM-EETAVVLAQKID 318 (330)
Q Consensus 297 l~~~~~~~g~-~~~a~~~~~~~~ 318 (330)
+..++.+.|+ +++|.+.+++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 7777777774 577777776654
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.05 E-value=7.8e-08 Score=75.76 Aligned_cols=167 Identities=7% Similarity=-0.005 Sum_probs=106.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCCh-----hhHHHHHHHHHhhCChhHHHHHHHHHHHcCCC---Cc--HH
Q 037620 117 IFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEA-----PTYNAVVGAYCWSMRINDAYRMMDEMRKCGIG---PN--TR 186 (330)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~ 186 (330)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...+++....... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444556667777777777777766654211110 12333445556667788888877777643211 11 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhh---cCCCCCC--chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC----CC-ccH
Q 037620 187 TYDIVLHHLIKAGRTEEAYSVFKRMS---RKPGTEP--TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG----VL-PVM 256 (330)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~ 256 (330)
+++.+...|...|++++|...+++.. +..+..+ ...++..+...|...|++++|...+++..+.. .. .-.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 67777788888888888888888766 2111111 12477788888888888888888888776431 11 115
Q ss_pred HHHHHHHHHHhccCChhHH-HHHHHHHH
Q 037620 257 HMYSTLINSLCHEDKLDDA-CKYFQEML 283 (330)
Q Consensus 257 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 283 (330)
.+|..+..+|...|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6777888888888888888 67677665
No 122
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.04 E-value=3.6e-07 Score=72.61 Aligned_cols=224 Identities=12% Similarity=0.078 Sum_probs=154.6
Q ss_pred HhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC-cHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhcc-C-cH
Q 037620 55 WGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAK-RYDEAVELFREMEATNCKPSPHIFCTLINGLGSE-K-RL 131 (330)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~ 131 (330)
....+..++|++++++++..+. -+..+|+.--.++...+ .+++++++++.+...+ +-+..+|+.-..++.+. + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 3444556789999999998853 36777887777777777 5999999999999887 77888888877777666 6 88
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChh--------HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC---
Q 037620 132 SEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIN--------DAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGR--- 200 (330)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 200 (330)
++++++++++.+.. +.+...|+.-...+.+.+.++ ++++.++++.+..+. |...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccccc
Confidence 99999999998875 456777776666666666666 888888888887544 77778877777777665
Q ss_pred ----HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCH--------------------HHHHHHHHHHHhCC-----
Q 037620 201 ----TEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQV--------------------DMAMRIWDEMKARG----- 251 (330)
Q Consensus 201 ----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~----- 251 (330)
++++++.+++... ..+-|...|+.+-..+.+.|.. ........++...+
T Consensus 220 ~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp CHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred chHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 5777777777765 2344566666655555555543 22222222222221
Q ss_pred CCccHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 252 VLPVMHMYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 252 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
-.+++..+..++..|...|+.++|.++++.+.+
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 124566677777777777777777777777754
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.04 E-value=3.3e-09 Score=83.05 Aligned_cols=99 Identities=9% Similarity=-0.070 Sum_probs=59.6
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLIN 123 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (330)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455555556666666666666666666542 2255556666666666666666666666666554 445566666666
Q ss_pred HHhccCcHHHHHHHHHHHHhc
Q 037620 124 GLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~ 144 (330)
++...|++++|...+.+..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666665543
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.04 E-value=1.2e-08 Score=69.32 Aligned_cols=95 Identities=7% Similarity=0.000 Sum_probs=44.7
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc
Q 037620 48 YTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGS 127 (330)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (330)
+......+.+.|++++|++.|++.++.. +.+..+|..+..++.+.|++++|+..|++.++.+ +.+...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 3344444444455555555554444432 2234444444444445555555555554444443 3344444444444445
Q ss_pred cCcHHHHHHHHHHHHhc
Q 037620 128 EKRLSEALQFFGQSKKR 144 (330)
Q Consensus 128 ~~~~~~a~~~~~~~~~~ 144 (330)
.|++++|.+.|++..+.
T Consensus 94 ~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 55555555555444443
No 125
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.04 E-value=3.3e-09 Score=74.37 Aligned_cols=98 Identities=9% Similarity=-0.077 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 037620 45 IKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124 (330)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (330)
...+..+...+.+.|++++|+..|+++.... +.+...|..+..++...|++++|+..|++..+.. |.++..|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 3445555556666666666666666666553 2255566666666666666666666666666554 4455566666666
Q ss_pred HhccCcHHHHHHHHHHHHhc
Q 037620 125 LGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~ 144 (330)
|...|++++|...|++..+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666555
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.03 E-value=1.3e-08 Score=69.14 Aligned_cols=116 Identities=8% Similarity=0.006 Sum_probs=98.6
Q ss_pred CCCC-hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHH
Q 037620 6 LKQE-LPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYG 84 (330)
Q Consensus 6 ~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (330)
+.|+ ...+......+.+.|++++|++.|+...+.. |.+...|..+..++.+.|++++|+..|++.++.+ +.+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHH
Confidence 3444 3568888899999999999999999998853 5578899999999999999999999999999875 44788999
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 037620 85 IMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124 (330)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (330)
.+..++...|++++|++.|++..+.. |.+...+..+..+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVD-PSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHHHh
Confidence 99999999999999999999999886 6667766665543
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.03 E-value=1.1e-07 Score=74.81 Aligned_cols=168 Identities=13% Similarity=0.110 Sum_probs=124.1
Q ss_pred hhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC--CCc--h
Q 037620 151 PTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNT-----RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGT--EPT--V 221 (330)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~ 221 (330)
..+...+..+...|++++|...+....+....... ..+..+...+...|++++|...+++....... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34555677888999999999999988775322111 22344556677889999999999988752211 111 4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHh---C-CCCc--cHHHHHHHHHHHhccCChhHHHHHHHHHHhcC----CCC-C
Q 037620 222 STYEIVVRMFCYNAQVDMAMRIWDEMKA---R-GVLP--VMHMYSTLINSLCHEDKLDDACKYFQEMLDIG----IRP-P 290 (330)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~ 290 (330)
.+++.+...|...|++++|...+++..+ . +..+ ...++..+..+|...|++++|+..+++.++.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4788999999999999999999998873 2 1111 22578889999999999999999999987532 111 1
Q ss_pred hhhHHHHHHHHHhcCchHHH-HHHHHHHH
Q 037620 291 GQLFSNLKQALRDEGMEETA-VVLAQKID 318 (330)
Q Consensus 291 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 318 (330)
..+|..+...|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 56788899999999999999 77677654
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.03 E-value=2.3e-08 Score=71.36 Aligned_cols=126 Identities=10% Similarity=-0.011 Sum_probs=62.0
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHh
Q 037620 47 SYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLG 126 (330)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (330)
.+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+.. +.+..++..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34444455555555555555555555442 2244455555555555555555555555555543 344455555555555
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCChhhHHH--HHHHHHhhCChhHHHHHHHH
Q 037620 127 SEKRLSEALQFFGQSKKRGFEPEAPTYNA--VVGAYCWSMRINDAYRMMDE 175 (330)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~ 175 (330)
..|++++|...++++.+.. +.+...+.. .+..+...|++++|...+..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 5555555555555555442 122222222 22224444555555554443
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.02 E-value=2.1e-08 Score=71.61 Aligned_cols=131 Identities=7% Similarity=0.017 Sum_probs=109.5
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINA 89 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (330)
...+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4557788888999999999999999988843 4578889999999999999999999999999874 4467889999999
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCChHHHHHH--HHHHhccCcHHHHHHHHHHHHh
Q 037620 90 HCSAKRYDEAVELFREMEATNCKPSPHIFCTL--INGLGSEKRLSEALQFFGQSKK 143 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~ 143 (330)
+...|++++|...|++..+.. +.+...+..+ +..+...|++++|.+.+.....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999998876 5566666443 4447788999999999887643
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.00 E-value=2.3e-08 Score=68.41 Aligned_cols=98 Identities=10% Similarity=-0.005 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 037620 45 IKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124 (330)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (330)
...|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 3344444444444555555555555444432 1234444444444445555555555555444433 3334444444444
Q ss_pred HhccCcHHHHHHHHHHHHhc
Q 037620 125 LGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~ 144 (330)
+...|++++|.+.+++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 44555555555555444443
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.00 E-value=2.1e-08 Score=68.55 Aligned_cols=121 Identities=10% Similarity=0.010 Sum_probs=102.6
Q ss_pred CCCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHH
Q 037620 6 LKQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGI 85 (330)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (330)
.+.+...|..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|+..+++..+.. +.+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 89 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTR 89 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 45567789999999999999999999999998853 4578889999999999999999999999999874 447788899
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccC
Q 037620 86 MINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEK 129 (330)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (330)
+..++...|++++|.+.|++..+.. +.+...+..+..++...|
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 9999999999999999999998875 455667777777666544
No 132
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.99 E-value=3e-08 Score=66.83 Aligned_cols=94 Identities=16% Similarity=0.217 Sum_probs=37.6
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc
Q 037620 48 YTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGS 127 (330)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (330)
|..+...+...|++++|.+.++++.+.. +.+..++..+..++...|++++|..+++++.... +.+..++..+..++..
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 3333344444444444444444443331 1233333334444444444444444444443332 2333334444444444
Q ss_pred cCcHHHHHHHHHHHHh
Q 037620 128 EKRLSEALQFFGQSKK 143 (330)
Q Consensus 128 ~~~~~~a~~~~~~~~~ 143 (330)
.|++++|...++++.+
T Consensus 90 ~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 90 QGDYDEAIEYYQKALE 105 (125)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 4444444444444433
No 133
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.99 E-value=2.2e-08 Score=67.50 Aligned_cols=115 Identities=16% Similarity=0.141 Sum_probs=97.9
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINA 89 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (330)
...|..+...+...|++++|.+.++.+.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 5678889999999999999999999998753 4577889999999999999999999999998874 4477888899999
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc
Q 037620 90 HCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGS 127 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (330)
+...|++++|...++++.+.. +.+...+..+..++..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 999999999999999998876 5566666666655543
No 134
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.98 E-value=1.1e-08 Score=71.64 Aligned_cols=99 Identities=13% Similarity=-0.009 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 037620 185 TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLIN 264 (330)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 264 (330)
...+..+...+...|++++|...|++... ..+.+...|..+..++...|++++|...|++..+..+. ++..|..+..
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 44666677777788888888888888776 23345667777778888888888888888887776554 5667777778
Q ss_pred HHhccCChhHHHHHHHHHHhcC
Q 037620 265 SLCHEDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 265 ~~~~~~~~~~a~~~~~~~~~~~ 286 (330)
+|...|++++|...|++.++..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888888888877653
No 135
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.98 E-value=1.8e-08 Score=68.59 Aligned_cols=96 Identities=11% Similarity=0.068 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHh
Q 037620 47 SYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLG 126 (330)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (330)
.+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..... +.+...+..+..++.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 33444444444444444444444444332 1233444444444444444444444444444432 333444444444444
Q ss_pred ccCcHHHHHHHHHHHHhc
Q 037620 127 SEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~ 144 (330)
..|++++|...+++..+.
T Consensus 92 ~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhc
Confidence 444444444444444443
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.98 E-value=4.5e-09 Score=82.26 Aligned_cols=195 Identities=7% Similarity=-0.036 Sum_probs=127.4
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 037620 79 DVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVG 158 (330)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (330)
+...+..+...+...|++++|+..|++..... +.+...+..+..+|.+.|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 55677788889999999999999999998876 6688889999999999999999999999998874 456778888999
Q ss_pred HHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHH
Q 037620 159 AYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVD 238 (330)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (330)
++...|++++|...++...+.... +...+...+....+. ..+..... ... ...+.+......+.. + ..|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~~~~-~~~-~~~~~~~~i~~~l~~-l-~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKRWNS-IEE-RRIHQESELHSYLTR-L-IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHHHHH-HHH-TCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHHHHH-HHH-HHHhhhHHHHHHHHH-H-HHHHHH
Confidence 999999999999999887764211 100111111111111 11111111 111 123334333333322 2 368888
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHhcc-CChhHHHHHHHHHHh
Q 037620 239 MAMRIWDEMKARGVLPVMHMYSTLINSLCHE-DKLDDACKYFQEMLD 284 (330)
Q Consensus 239 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 284 (330)
+|.+.++...+.... +......+...+.+. +.+++|.++|.++.+
T Consensus 153 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHEGHED-DGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGTTTSC-HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888888877765332 333333443334443 667888888887764
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.97 E-value=7.1e-09 Score=75.12 Aligned_cols=121 Identities=9% Similarity=0.091 Sum_probs=76.7
Q ss_pred HccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHH-HhccCcH--H
Q 037620 21 CKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINA-HCSAKRY--D 97 (330)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~--~ 97 (330)
...|++++|...++...+.. +.+...|..+...+...|++++|...|++..+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34566677777776666532 3456667777777777777777777777776653 2355566666666 5566776 7
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 98 EAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
+|...+++..+.. +.+...+..+..+|...|++++|...+.++.+.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777777776664 455666666777777777777777777776665
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.96 E-value=1.4e-08 Score=69.19 Aligned_cols=122 Identities=12% Similarity=0.018 Sum_probs=104.2
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHH
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIM 86 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (330)
+.+...+..+...+...|++++|...++...... +.+...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 86 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHH
Confidence 3456778889999999999999999999988743 4578889999999999999999999999999874 4467888899
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcH
Q 037620 87 INAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRL 131 (330)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (330)
..++...|++++|...|++..+.. +.+...+..+..++...|++
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999998876 56777888888888776654
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.95 E-value=8.4e-08 Score=73.68 Aligned_cols=188 Identities=9% Similarity=-0.082 Sum_probs=113.5
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCChHHHHHH-------HHHHhccCcHHHHHHHHHHHHhcCCCCC---------------
Q 037620 92 SAKRYDEAVELFREMEATNCKPSPHIFCTL-------INGLGSEKRLSEALQFFGQSKKRGFEPE--------------- 149 (330)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 149 (330)
..++...|.+.|.++.... |.....|..+ ...+.+.++..+++..+...... .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 4567777777777777665 5556666665 34444444444444444433331 111
Q ss_pred -------hhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCc--
Q 037620 150 -------APTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPT-- 220 (330)
Q Consensus 150 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 220 (330)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..... . .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccH
Confidence 1223345566777788888888777766543 33335555555777788888888888755431 1 111
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCc--cHHHHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 037620 221 VSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLP--VMHMYSTLINSLCHEDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 286 (330)
...+..+..++...|++++|+..|++.......| ..........++.+.|+.++|..+|+++....
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2356667777788888888888888776443213 23355566667777888888888888887653
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.93 E-value=1.8e-08 Score=74.62 Aligned_cols=24 Identities=8% Similarity=-0.097 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHH
Q 037620 153 YNAVVGAYCWSMRINDAYRMMDEM 176 (330)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~ 176 (330)
+..+...+...|++++|...+++.
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 110 AYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334444444444444444444443
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.93 E-value=1.1e-08 Score=71.69 Aligned_cols=99 Identities=12% Similarity=0.004 Sum_probs=64.8
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLIN 123 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (330)
+...+..+...+...|++++|+..|+...... +.+...|..+..++...|++++|+..|++....+ |.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 34455556666667777777777777766653 3356666666666777777777777777766655 455666666666
Q ss_pred HHhccCcHHHHHHHHHHHHhc
Q 037620 124 GLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~ 144 (330)
+|...|++++|...|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777666554
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.92 E-value=2.7e-08 Score=72.00 Aligned_cols=118 Identities=10% Similarity=0.117 Sum_probs=51.0
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHH-HHhhCCh--hHH
Q 037620 93 AKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGA-YCWSMRI--NDA 169 (330)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~a 169 (330)
.|++++|...+++..... +.+...+..+..+|...|++++|...++++.+.. +.+...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 344444444444444433 3344444444444444444444444444444432 2233334444444 3444444 555
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 170 YRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
...++....... .+...+..+...+...|++++|...++++.+
T Consensus 101 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 555554444321 1334444444455555555555555555443
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.92 E-value=3e-08 Score=73.34 Aligned_cols=156 Identities=14% Similarity=0.046 Sum_probs=71.4
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc----CC-CCChhhHHHHHHHHHhhCCh
Q 037620 92 SAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR----GF-EPEAPTYNAVVGAYCWSMRI 166 (330)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~ 166 (330)
..|++++|.++++.+.. .......++..+...+...|++++|...+.+.... +. +.....+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34555555553333322 11233445555555555555555555555554431 10 11223445555555666666
Q ss_pred hHHHHHHHHHHHc----CCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---CCCC-CchHHHHHHHHHHHhCCC
Q 037620 167 NDAYRMMDEMRKC----GIGP--NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRK---PGTE-PTVSTYEIVVRMFCYNAQ 236 (330)
Q Consensus 167 ~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~-~~~~~~~~l~~~~~~~~~ 236 (330)
++|...+++.... +..+ ....+..+...+...|++++|...+++.... .+.. ....++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666665554432 1011 1234555555666666666666666655421 0000 011223444555555555
Q ss_pred HHHHHHHHHHHH
Q 037620 237 VDMAMRIWDEMK 248 (330)
Q Consensus 237 ~~~a~~~~~~~~ 248 (330)
+++|...+++..
T Consensus 163 ~~~A~~~~~~al 174 (203)
T 3gw4_A 163 LLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.91 E-value=5.3e-08 Score=78.26 Aligned_cols=122 Identities=7% Similarity=-0.132 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCC--------------hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCC
Q 037620 46 KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPD--------------VVSYGIMINAHCSAKRYDEAVELFREMEATNC 111 (330)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 111 (330)
..|..+...+.+.|++++|+..|++..+...... ..+|..+..++.+.|++++|+..+++.++..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3444445555555555555555555554421110 2444444444555555555555555544443
Q ss_pred CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHH
Q 037620 112 KPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDA 169 (330)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (330)
+.+..++..+..+|...|++++|...|+++.+.. +.+...+..+..++.+.|+.+++
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555554444442 22333444444444444444444
No 145
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.91 E-value=2.3e-07 Score=71.24 Aligned_cols=190 Identities=9% Similarity=-0.031 Sum_probs=140.1
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCChhhHHHH-------HHHHHhhCChhHHHHHHHHHHHcCCCCc---------------
Q 037620 127 SEKRLSEALQFFGQSKKRGFEPEAPTYNAV-------VGAYCWSMRINDAYRMMDEMRKCGIGPN--------------- 184 (330)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 184 (330)
..++...|.+.|.++.+.. +.....|..+ ...+...++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5899999999999999885 4456777777 4556666666666555554433 1111
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCcc--
Q 037620 185 -------TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPV-- 255 (330)
Q Consensus 185 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 255 (330)
..........+...|++++|.++|+.+.. ..|+......+...+.+.+++++|+..|+...... .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 22344566778899999999999998875 23444366666778899999999999998654432 121
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCC
Q 037620 256 MHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPP--GQLFSNLKQALRDEGMEETAVVLAQKIDKLRKT 323 (330)
Q Consensus 256 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (330)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....+.
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 23677788899999999999999999985433253 345667788899999999999999999887654
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.90 E-value=1.7e-08 Score=70.68 Aligned_cols=98 Identities=8% Similarity=0.011 Sum_probs=57.3
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 037620 79 DVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVG 158 (330)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (330)
+...+..+...+...|++++|+..|++....+ |.+...|..+..+|...|++++|...++++.... +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 33445555556666666666666666665554 4455566666666666666666666666665553 234455555566
Q ss_pred HHHhhCChhHHHHHHHHHHH
Q 037620 159 AYCWSMRINDAYRMMDEMRK 178 (330)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~ 178 (330)
++...|++++|...|+...+
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666665554
No 147
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.89 E-value=5.7e-08 Score=78.05 Aligned_cols=131 Identities=9% Similarity=-0.028 Sum_probs=112.9
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC---------------hHHHHHHHHHHhhccChHHHHHHHHHHHh
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPD---------------IKSYTILLEGWGQQKNLLSMNEVYREMKD 73 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (330)
+...+..+...+.+.|++++|+..|+...+.. +.+ ..+|..+..++.+.|++++|+..+++.++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35578888899999999999999999998853 223 48899999999999999999999999998
Q ss_pred CCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHH-HHHHHHH
Q 037620 74 DGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEAL-QFFGQSK 142 (330)
Q Consensus 74 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~ 142 (330)
.. +.+...|..+..++...|++++|...|++..+.. |.+..++..+..++.+.|+.++|. ..+..|.
T Consensus 225 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 225 LD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 85 4478899999999999999999999999999886 677889999999999999999884 4555554
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.85 E-value=6.6e-09 Score=76.81 Aligned_cols=148 Identities=9% Similarity=-0.091 Sum_probs=77.0
Q ss_pred HHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCCh----------------HH
Q 037620 19 TLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDV----------------VS 82 (330)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~ 82 (330)
.....|+++++.+.++.-... .......+..+...+...|++++|+..|++..+.... +. .+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp ---------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHHH
Confidence 334445555555555432221 0113345566666777777777777777777765211 21 45
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 037620 83 YGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCW 162 (330)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (330)
+..+..++...|++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++..
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHH
Confidence 5556666666666666666666666554 4455566666666666666666666666665552 2344445555555544
Q ss_pred hCChhHHH
Q 037620 163 SMRINDAY 170 (330)
Q Consensus 163 ~~~~~~a~ 170 (330)
.++..++.
T Consensus 169 ~~~~~~~~ 176 (198)
T 2fbn_A 169 LKEARKKD 176 (198)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHH
Confidence 44444433
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.84 E-value=1.3e-07 Score=64.08 Aligned_cols=93 Identities=12% Similarity=0.089 Sum_probs=40.4
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc
Q 037620 48 YTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGS 127 (330)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (330)
|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..+++..+.+ +.+...+..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 3333344444444444444444444432 1233444444444444444444444444444433 3334444444444444
Q ss_pred cCcHHHHHHHHHHHH
Q 037620 128 EKRLSEALQFFGQSK 142 (330)
Q Consensus 128 ~~~~~~a~~~~~~~~ 142 (330)
.|++++|...+++..
T Consensus 85 ~~~~~~A~~~~~~al 99 (126)
T 3upv_A 85 VKEYASALETLDAAR 99 (126)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHH
Confidence 444444444444443
No 150
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.83 E-value=1.1e-07 Score=62.75 Aligned_cols=102 Identities=9% Similarity=0.100 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC--ChhhHHHHH
Q 037620 221 VSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP--PGQLFSNLK 298 (330)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 298 (330)
...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 445566677777778888888888777766433 55667777777778888888888888777653 23 466777777
Q ss_pred HHHHhc-CchHHHHHHHHHHHhcCCCC
Q 037620 299 QALRDE-GMEETAVVLAQKIDKLRKTP 324 (330)
Q Consensus 299 ~~~~~~-g~~~~a~~~~~~~~~~~~~~ 324 (330)
..+.+. |++++|.+.+++..+....+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 777888 88888888888877766644
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.82 E-value=2.5e-07 Score=61.49 Aligned_cols=97 Identities=11% Similarity=0.036 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 037620 11 PDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAH 90 (330)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (330)
..+..+...+...|++++|...|+...... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 344455555555555555555555554421 2244445555555555555555555555555442 22344444555555
Q ss_pred hccCcHHHHHHHHHHHHhc
Q 037620 91 CSAKRYDEAVELFREMEAT 109 (330)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~ 109 (330)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 5555555555555555444
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.82 E-value=2.7e-07 Score=61.33 Aligned_cols=98 Identities=14% Similarity=0.006 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 037620 45 IKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124 (330)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (330)
...+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3455556666666666666666666666553 2255556666666666666666666666666554 4455566666666
Q ss_pred HhccCcHHHHHHHHHHHHhc
Q 037620 125 LGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~ 144 (330)
+...|++++|.+.+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 66666666666666666554
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.82 E-value=6.8e-08 Score=67.11 Aligned_cols=97 Identities=10% Similarity=-0.050 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 037620 46 KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGL 125 (330)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (330)
..+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|+..|++....+ |.++..+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 444555556666666666766666666553 2355566666666666666777776666666654 55556666666666
Q ss_pred hccCcHHHHHHHHHHHHhc
Q 037620 126 GSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~ 144 (330)
...|++++|...+++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666554
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.81 E-value=2.3e-07 Score=62.85 Aligned_cols=98 Identities=12% Similarity=0.069 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 037620 80 VVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGA 159 (330)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (330)
...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 4456667777788888888888888887765 6677788888888888888888888888887764 3456677777778
Q ss_pred HHhhCChhHHHHHHHHHHHc
Q 037620 160 YCWSMRINDAYRMMDEMRKC 179 (330)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~ 179 (330)
+...|++++|...+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 88888888888888777664
No 155
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.80 E-value=1.3e-07 Score=62.26 Aligned_cols=96 Identities=13% Similarity=0.059 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCC--ChHHHHHHHHH
Q 037620 47 SYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKP--SPHIFCTLING 124 (330)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 124 (330)
.+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +. +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 33444444444444444444444444432 1233444444444444455555555554444433 22 34444444444
Q ss_pred Hhcc-CcHHHHHHHHHHHHhc
Q 037620 125 LGSE-KRLSEALQFFGQSKKR 144 (330)
Q Consensus 125 ~~~~-~~~~~a~~~~~~~~~~ 144 (330)
+... |++++|.+.+......
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 4455 5555555555444443
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.80 E-value=6.9e-08 Score=67.06 Aligned_cols=100 Identities=13% Similarity=-0.057 Sum_probs=87.4
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 037620 9 ELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMIN 88 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (330)
+...+..+...+.+.|++++|...|+...... |.+...|..+..++...|++++|+..|++..... +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 34557777888999999999999999998853 5578889999999999999999999999999885 447788888999
Q ss_pred HHhccCcHHHHHHHHHHHHhcC
Q 037620 89 AHCSAKRYDEAVELFREMEATN 110 (330)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~ 110 (330)
++...|++++|.+.|++..+..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999988764
No 157
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.80 E-value=2.6e-05 Score=61.70 Aligned_cols=185 Identities=8% Similarity=-0.010 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccC--cHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCC-hhHHHHH
Q 037620 96 YDEAVELFREMEATNCKPSPHIFCTLINGLGSEK--RLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMR-INDAYRM 172 (330)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~ 172 (330)
+++++.+++.+...+ |-+..+|+.-..++...+ .+++++.+++.+.+.. +.|...|+.-...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 344555555554443 344444444444444444 2455555555555443 2344444444444444444 2455555
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHc--------------CCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhC----
Q 037620 173 MDEMRKCGIGPNTRTYDIVLHHLIKA--------------GRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYN---- 234 (330)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 234 (330)
++.+....+. |...|+.....+... +.++++++.+..... ..+-|...|+-+-..+.+.
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCcc
Confidence 5555544322 344444433333332 234555555555543 1223344444333333332
Q ss_pred -------CCHHHHHHHHHHHHhCCCCccHHHHHHH---HHHHhccCChhHHHHHHHHHHhcC
Q 037620 235 -------AQVDMAMRIWDEMKARGVLPVMHMYSTL---INSLCHEDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 235 -------~~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~ 286 (330)
+.++++++.++++.+..+. +.-.+..+ .......+..+++...+.++.+.+
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCcc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 3466777777777765432 22112111 112223566677777777777543
No 158
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.78 E-value=2.4e-05 Score=61.85 Aligned_cols=217 Identities=9% Similarity=0.019 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCc----------HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCC-
Q 037620 97 DEAVELFREMEATNCKPSPHIFCTLINGLGSEKR----------LSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMR- 165 (330)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 165 (330)
++|+.+++.+...+ |-+..+|+.--.++...+. +++++.+++.+.... +-+..+|+.-...+.+.++
T Consensus 47 ~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~ 124 (331)
T 3dss_A 47 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 124 (331)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcc
Confidence 35666666666655 4444555543333333222 678889999988874 4577788877777777774
Q ss_pred -hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhC---------
Q 037620 166 -INDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGR-TEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYN--------- 234 (330)
Q Consensus 166 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 234 (330)
+++++.+++.+.+.... +...|+--..++...|. ++++++.++.+.+ ..+-|...|+.....+...
T Consensus 125 ~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~ 201 (331)
T 3dss_A 125 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQ 201 (331)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHHSCCC-----
T ss_pred cHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhhhccccccc
Confidence 88999999999987644 77888877777888888 5899999999887 2344666776665555544
Q ss_pred -----CCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcc-----------CChhHHHHHHHHHHhcCCCCChhhHHH--
Q 037620 235 -----AQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHE-----------DKLDDACKYFQEMLDIGIRPPGQLFSN-- 296 (330)
Q Consensus 235 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 296 (330)
+.++++++.+.......+. |...|+.+-..+.+. +.++++++.++++.+.. |+. .|..
T Consensus 202 ~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~--pd~-~w~l~~ 277 (331)
T 3dss_A 202 GRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE--PEN-KWCLLT 277 (331)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC--TTC-HHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC--ccc-chHHHH
Confidence 4578999999999887666 777887655555444 45788999999998754 443 2332
Q ss_pred HH---HHHHhcCchHHHHHHHHHHHhcCC
Q 037620 297 LK---QALRDEGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 297 l~---~~~~~~g~~~~a~~~~~~~~~~~~ 322 (330)
++ ......|..+++..++.++.+.++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 278 IILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 22 122346778888899998887654
No 159
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.76 E-value=1.2e-07 Score=64.46 Aligned_cols=95 Identities=13% Similarity=0.143 Sum_probs=38.6
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCC--CCC----hHHHHHH
Q 037620 48 YTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNC--KPS----PHIFCTL 121 (330)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~l 121 (330)
|..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++...... +++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3333344444444444444444444332 22333344444444444444444444444433220 011 3334444
Q ss_pred HHHHhccCcHHHHHHHHHHHHh
Q 037620 122 INGLGSEKRLSEALQFFGQSKK 143 (330)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~ 143 (330)
..++...|++++|.+.++++.+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4444444444444444444444
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.75 E-value=2.2e-07 Score=63.07 Aligned_cols=59 Identities=15% Similarity=0.149 Sum_probs=28.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 037620 83 YGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSK 142 (330)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (330)
+..+...+.+.|++++|+..|++.++.. |.+..+|..+..+|.+.|++++|++.+++..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344444444455555555555444443 3344444444445555555555555444443
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=5.9e-07 Score=62.49 Aligned_cols=98 Identities=10% Similarity=-0.012 Sum_probs=52.2
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCC----hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHH
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPD----VVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFC 119 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (330)
+...+..+...+...|++++|.+.|++..+. .|+ ...+..+..++...|++++|+..+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 3444555555555555555555555555544 223 3445555555555555555555555555443 33445555
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 120 TLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
.+..++...|++++|...+++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5555555555555555555555544
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=7.4e-07 Score=61.99 Aligned_cols=115 Identities=10% Similarity=-0.061 Sum_probs=96.0
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCC----hHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHH
Q 037620 7 KQELPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPD----IKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVS 82 (330)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (330)
+.+...+..+...+...|++++|.+.|+...+.. |+ ...|..+...+...|++++|+..+++..+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 3466778899999999999999999999998853 55 6788889999999999999999999998874 336788
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 037620 83 YGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGL 125 (330)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (330)
+..+..++...|++++|...|++..+.. +.+...+..+....
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHH
Confidence 8889999999999999999999998875 55566665555443
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.75 E-value=2.7e-07 Score=68.07 Aligned_cols=131 Identities=11% Similarity=-0.033 Sum_probs=102.2
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCh----------------HHHHHHHHHHhhccChHHHHHHHHHHHh
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDI----------------KSYTILLEGWGQQKNLLSMNEVYREMKD 73 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (330)
...+..+...+...|++++|+..|+...+.. +.+. ..|..+..++...|++++|+..+++..+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3457778888999999999999999998742 2222 7888899999999999999999999998
Q ss_pred CCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHH-HHHHHHHh
Q 037620 74 DGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEAL-QFFGQSKK 143 (330)
Q Consensus 74 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~ 143 (330)
.. +.+...+..+..++...|++++|...|++..+.. +.+..++..+..++...++.+++. ..+..+..
T Consensus 117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 74 4478889999999999999999999999998876 667788888888888777776666 44444443
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.74 E-value=1.4e-07 Score=64.08 Aligned_cols=106 Identities=11% Similarity=0.088 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC--cc----HHHH
Q 037620 186 RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVL--PV----MHMY 259 (330)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 259 (330)
..+..+...+.+.|++++|+..|++..+. .+.+...|..+..+|...|++++|+..+++.++.... ++ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 45566777777777777777777777652 2334566777777777777777777777776654211 11 1345
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHH
Q 037620 260 STLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFS 295 (330)
Q Consensus 260 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 295 (330)
..+..++...|++++|+..|++.++. .|++.+..
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 56666777777777777777777653 45655443
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.73 E-value=4.4e-07 Score=62.33 Aligned_cols=97 Identities=9% Similarity=-0.064 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLIN 123 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (330)
+...|..+...+...|++++|+..|....... +.+...|..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 33444444444444555555555554444432 2234444444444445555555555555444443 334444444444
Q ss_pred HHhccCcHHHHHHHHHHHH
Q 037620 124 GLGSEKRLSEALQFFGQSK 142 (330)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~ 142 (330)
++...|++++|...+.+..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 4555555555554444443
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.72 E-value=3.9e-07 Score=64.95 Aligned_cols=97 Identities=7% Similarity=-0.047 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 037620 46 KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGL 125 (330)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (330)
..|..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+.. +.+...|..+..+|
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344444455555555555555555555442 2244455555555555555555555555555443 34455555555555
Q ss_pred hccCcHHHHHHHHHHHHhc
Q 037620 126 GSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~ 144 (330)
...|++++|...|++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 5555555555555555443
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.71 E-value=5.1e-07 Score=62.00 Aligned_cols=100 Identities=12% Similarity=0.048 Sum_probs=81.8
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHH
Q 037620 183 PNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTL 262 (330)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 262 (330)
.+...+..+...+...|++++|...|+..... .+.+...+..+..++...|++++|...+++..+.... +...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHH
Confidence 45678888888889999999999999988762 3345677888888889999999999999988877544 67788888
Q ss_pred HHHHhccCChhHHHHHHHHHHhc
Q 037620 263 INSLCHEDKLDDACKYFQEMLDI 285 (330)
Q Consensus 263 ~~~~~~~~~~~~a~~~~~~~~~~ 285 (330)
..++...|++++|...|++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 88899999999999999888754
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.71 E-value=6.4e-07 Score=63.80 Aligned_cols=100 Identities=10% Similarity=0.029 Sum_probs=81.4
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 037620 79 DVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVG 158 (330)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (330)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45667778888888889999999988888776 6678888888888888888888888888888774 445777888888
Q ss_pred HHHhhCChhHHHHHHHHHHHcC
Q 037620 159 AYCWSMRINDAYRMMDEMRKCG 180 (330)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~ 180 (330)
++...|++++|...|++..+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 8888888888888888887643
No 169
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.71 E-value=2.8e-05 Score=65.78 Aligned_cols=124 Identities=9% Similarity=0.050 Sum_probs=87.5
Q ss_pred hHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHH
Q 037620 152 TYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIK-AGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRM 230 (330)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 230 (330)
.|...+....+.+..+.|..+|+.. .. ...+...|......-.. .++.+.|..+|+...+..+. +...+...++.
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid~ 363 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHHH
Confidence 3555555555677899999999998 32 22344455433322222 34699999999998874332 33455667777
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 231 FCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 231 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
....|+.+.|..+|+++. .....|...+..-...|+.+.+.+++++..+
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788899999999999973 2567788888777778999999999988874
No 170
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.70 E-value=2.4e-06 Score=71.13 Aligned_cols=196 Identities=9% Similarity=-0.018 Sum_probs=99.6
Q ss_pred HHHHHccCChHHHHHHHHHHhhCCCCC-Ch---------------HHHHHHHHHHhhccChHHHHHHHHHHHhCC-CCCC
Q 037620 17 IDTLCKSRHVERAQEVFDKMKKRRFDP-DI---------------KSYTILLEGWGQQKNLLSMNEVYREMKDDG-FEPD 79 (330)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~-~~---------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 79 (330)
...+.+.|++++|++.|..+.+..... +. .++..+...|...|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 345667778888888877777642111 10 125556666667777777776666655431 0111
Q ss_pred h----HHHHHHHHHHhccCcHHHHHHHHHHHHhc----C-CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCC---
Q 037620 80 V----VSYGIMINAHCSAKRYDEAVELFREMEAT----N-CKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFE--- 147 (330)
Q Consensus 80 ~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--- 147 (330)
. .+.+.+...+...|+.+.+..+++..... + ...-..++..+...|...|++++|..++.++...-..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 11222333344456666666666655431 1 1122345555666666666666666666655432111
Q ss_pred --CChhhHHHHHHHHHhhCChhHHHHHHHHHHHc--CCC-C-c--HHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 037620 148 --PEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC--GIG-P-N--TRTYDIVLHHLIKAGRTEEAYSVFKRMS 212 (330)
Q Consensus 148 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~-~-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (330)
....++..++..|...|++++|...+++.... .+. | . ...+..+...+...+++++|...+....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11234555566666666666666666555431 111 1 1 1233334444445566666665555543
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.69 E-value=2.8e-07 Score=61.92 Aligned_cols=97 Identities=8% Similarity=-0.101 Sum_probs=67.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 037620 224 YEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRD 303 (330)
Q Consensus 224 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 303 (330)
+..+...+...|++++|...+++..+.... +...|..+..++...|++++|+..+++.++.. +.+...+..+..++.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 445566677777777777777777766544 56677777777777778888887777777654 2356667777777777
Q ss_pred cCchHHHHHHHHHHHhcCC
Q 037620 304 EGMEETAVVLAQKIDKLRK 322 (330)
Q Consensus 304 ~g~~~~a~~~~~~~~~~~~ 322 (330)
.|++++|...+++..+..+
T Consensus 98 ~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 7778888777777765543
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.68 E-value=3.3e-06 Score=70.34 Aligned_cols=198 Identities=8% Similarity=-0.037 Sum_probs=129.3
Q ss_pred HHHHhhccChHHHHHHHHHHHhCCCCCC----------------hHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-CCCC
Q 037620 52 LEGWGQQKNLLSMNEVYREMKDDGFEPD----------------VVSYGIMINAHCSAKRYDEAVELFREMEATN-CKPS 114 (330)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 114 (330)
...+.+.|++++|++.|..+.+...... ..++..+...|...|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4556788999999999999887642211 1246678888888899999988888776431 1122
Q ss_pred h----HHHHHHHHHHhccCcHHHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhhCChhHHHHHHHHHHHc--CCC-
Q 037620 115 P----HIFCTLINGLGSEKRLSEALQFFGQSKKR----GFEP-EAPTYNAVVGAYCWSMRINDAYRMMDEMRKC--GIG- 182 (330)
Q Consensus 115 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~- 182 (330)
. .+.+.+...+...|+++.|..++...... +..+ -..++..+...|...|++++|..+++.+... +..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 23334445556678888888888776432 2222 2346677788888888888888888877552 111
Q ss_pred -C-cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC---CCCCc--hHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 037620 183 -P-NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKP---GTEPT--VSTYEIVVRMFCYNAQVDMAMRIWDEMKA 249 (330)
Q Consensus 183 -~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 249 (330)
+ ...++..++..|...|++++|..++++..... ..++. ...+..+...+...+++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 13467777788888888888888887765311 11111 23455566667777888888888777665
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.66 E-value=3.3e-07 Score=62.23 Aligned_cols=98 Identities=10% Similarity=0.118 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCC--CCC----hhhHH
Q 037620 81 VSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGF--EPE----APTYN 154 (330)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 154 (330)
..+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+.++.+... .++ ...+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 455666677777777777777777776664 55666677777777777777777777777655421 111 44556
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHHc
Q 037620 155 AVVGAYCWSMRINDAYRMMDEMRKC 179 (330)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (330)
.+..++...|++++|...++.....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 6666666667777777766666664
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.65 E-value=4.1e-07 Score=61.11 Aligned_cols=87 Identities=8% Similarity=0.011 Sum_probs=36.5
Q ss_pred HHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHH
Q 037620 54 GWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSE 133 (330)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (330)
.+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+.. |.+...+..+..++...|++++
T Consensus 26 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~~~~ 103 (121)
T 1hxi_A 26 SMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANA 103 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3344444444444444444332 1133344444444444444444444444444433 3333444444444444444444
Q ss_pred HHHHHHHHH
Q 037620 134 ALQFFGQSK 142 (330)
Q Consensus 134 a~~~~~~~~ 142 (330)
|...+++..
T Consensus 104 A~~~~~~al 112 (121)
T 1hxi_A 104 ALASLRAWL 112 (121)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 175
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.57 E-value=1.6e-06 Score=72.76 Aligned_cols=87 Identities=10% Similarity=-0.026 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 037620 116 HIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHL 195 (330)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (330)
.+|..+..+|.+.|++++|+..++++.+.. +.+...+..+..+|...|++++|...|++..+... .+...+..+..++
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 444444455555555555555555544442 22344444455555555555555555555444321 1233444444444
Q ss_pred HHcCCHHHH
Q 037620 196 IKAGRTEEA 204 (330)
Q Consensus 196 ~~~~~~~~a 204 (330)
...++.+++
T Consensus 396 ~~~~~~~~a 404 (457)
T 1kt0_A 396 KKAKEHNER 404 (457)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.56 E-value=1.8e-06 Score=72.83 Aligned_cols=120 Identities=10% Similarity=-0.010 Sum_probs=71.4
Q ss_pred HHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcH
Q 037620 52 LEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRL 131 (330)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (330)
...+.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|++.+++..+.. +.+..++..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 344556677777777777766653 2246666666677777777777777777766654 45566666666677777777
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHH--HHhhCChhHHHHHHH
Q 037620 132 SEALQFFGQSKKRGFEPEAPTYNAVVGA--YCWSMRINDAYRMMD 174 (330)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 174 (330)
++|.+.++++.+.. +.+...+..+..+ +.+.|++++|...++
T Consensus 91 ~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777776666553 2233344444444 555666666666655
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.55 E-value=4.8e-07 Score=76.29 Aligned_cols=127 Identities=6% Similarity=0.003 Sum_probs=100.2
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhc
Q 037620 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCS 92 (330)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (330)
+..+...+.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|++.+++..+.. +.+...+..+..++..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4444556778899999999999998853 4468899999999999999999999999999885 3477888999999999
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHH--HhccCcHHHHHHHHHHHH
Q 037620 93 AKRYDEAVELFREMEATNCKPSPHIFCTLING--LGSEKRLSEALQFFGQSK 142 (330)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~ 142 (330)
.|++++|.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.+++..
T Consensus 87 ~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~ 137 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 137 (477)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------CC
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999999999998875 5555666666666 888899999999887643
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.55 E-value=2.6e-06 Score=57.68 Aligned_cols=59 Identities=15% Similarity=0.061 Sum_probs=23.5
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCCCCC---hHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 037620 84 GIMINAHCSAKRYDEAVELFREMEATNCKPS---PHIFCTLINGLGSEKRLSEALQFFGQSKK 143 (330)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (330)
..+..++...|++++|...|+++.... +.+ ..++..+..++...|++++|...++++.+
T Consensus 43 ~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 43 YWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333344444444444444444443332 112 23333344444444444444444444433
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.55 E-value=3.8e-06 Score=56.88 Aligned_cols=103 Identities=10% Similarity=0.039 Sum_probs=83.2
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhhCCCCCCh---HHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCC---hHHHHH
Q 037620 12 DFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDI---KSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPD---VVSYGI 85 (330)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ 85 (330)
.+..+...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...|++..+.... + ...+..
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~ 81 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLK 81 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHH
Confidence 34556778889999999999999998843 2333 57888889999999999999999999887422 3 567888
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhcCCCCChHH
Q 037620 86 MINAHCSAKRYDEAVELFREMEATNCKPSPHI 117 (330)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 117 (330)
+..++...|++++|...|+++.... |.+...
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 112 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQY-PGSDAA 112 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTSHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCChHH
Confidence 8999999999999999999998875 334333
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.54 E-value=1.4e-06 Score=73.18 Aligned_cols=152 Identities=9% Similarity=-0.034 Sum_probs=106.7
Q ss_pred cCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCC--------------hHHHHHHHH
Q 037620 23 SRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPD--------------VVSYGIMIN 88 (330)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~ 88 (330)
.+++++|...|+...+.. +-....|..+...+.+.|++++|+..|++.++...... ..+|..+..
T Consensus 247 l~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 344555554444333211 12456677777778888888888888888776522211 477888888
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhH
Q 037620 89 AHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIND 168 (330)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (330)
++.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|+++.+.. +.+...+..+..++.+.++.++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999988876 6678888888889999999999999999888774 4456778888888888888877
Q ss_pred HHH-HHHHHH
Q 037620 169 AYR-MMDEMR 177 (330)
Q Consensus 169 a~~-~~~~~~ 177 (330)
+.. .+..|.
T Consensus 404 a~~~~~~~~f 413 (457)
T 1kt0_A 404 RDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 654 444443
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.51 E-value=1.1e-06 Score=62.11 Aligned_cols=24 Identities=25% Similarity=0.294 Sum_probs=10.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHh
Q 037620 188 YDIVLHHLIKAGRTEEAYSVFKRM 211 (330)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~ 211 (330)
+..+...+...|++++|...+++.
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a 75 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKT 75 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444444444444444444443
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.50 E-value=2.1e-06 Score=69.77 Aligned_cols=96 Identities=9% Similarity=0.004 Sum_probs=48.6
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHHhCC---------------CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCC
Q 037620 48 YTILLEGWGQQKNLLSMNEVYREMKDDG---------------FEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCK 112 (330)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 112 (330)
+..+...+.+.|++++|+..|++.++.- .+.+..+|..+..++.+.|++++|+..+++..+.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 4555556666666666666666665410 01123344444455555555555555555555443 3
Q ss_pred CChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 113 PSPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
.+..++..+..+|...|++++|.+.++++.+.
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34444445555555555555555555554444
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.50 E-value=3.8e-07 Score=60.88 Aligned_cols=60 Identities=8% Similarity=-0.032 Sum_probs=25.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 037620 82 SYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSK 142 (330)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (330)
.+..+..++...|++++|+..|++..+.. |.+..++..+..++...|++++|...+.+..
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33344444444444444444444444433 3333444444444444444444444444443
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.49 E-value=2.7e-06 Score=60.31 Aligned_cols=97 Identities=13% Similarity=0.025 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHhC--------C---------CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 47 SYTILLEGWGQQKNLLSMNEVYREMKDD--------G---------FEPDVVSYGIMINAHCSAKRYDEAVELFREMEAT 109 (330)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 109 (330)
.+......+.+.|++++|+..|.+.+.. . .+.+...|..+..++.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444444555555555555555555432 0 0113345666666666777777777777776666
Q ss_pred CCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 110 NCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 110 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
+ |.+...|..+..+|...|++++|...|.+..+.
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 5 556666666667777777777777777666665
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.49 E-value=2.1e-06 Score=69.83 Aligned_cols=124 Identities=12% Similarity=0.049 Sum_probs=103.1
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHhhC---------------CCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCC
Q 037620 11 PDFNRLIDTLCKSRHVERAQEVFDKMKKR---------------RFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDG 75 (330)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 75 (330)
..+..+...+.+.|++++|+..|+...+. ..+.+...|..+..++.+.|++++|+..+++.++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 34778888899999999999999998761 112345788889999999999999999999999875
Q ss_pred CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHH
Q 037620 76 FEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQ 136 (330)
Q Consensus 76 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 136 (330)
+.+...|..+..++...|++++|++.|++..+.. +.+...+..+..++...++.+++.+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477889999999999999999999999999876 5677788888888877777776654
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.48 E-value=1.4e-06 Score=61.45 Aligned_cols=94 Identities=13% Similarity=0.021 Sum_probs=39.8
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHHhCCCC-CC----hHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--C---CCChHH
Q 037620 48 YTILLEGWGQQKNLLSMNEVYREMKDDGFE-PD----VVSYGIMINAHCSAKRYDEAVELFREMEATN--C---KPSPHI 117 (330)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~---~~~~~~ 117 (330)
+..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|.+.+++..+.. . +....+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444444455555555555444332100 00 1234444455555555555555555443321 0 001223
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHH
Q 037620 118 FCTLINGLGSEKRLSEALQFFGQS 141 (330)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~ 141 (330)
+..+..++...|++++|.+.+++.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444445555555555554444
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.48 E-value=3.7e-06 Score=59.64 Aligned_cols=99 Identities=15% Similarity=0.123 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------C---------CCCChHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 037620 80 VVSYGIMINAHCSAKRYDEAVELFREMEAT--------N---------CKPSPHIFCTLINGLGSEKRLSEALQFFGQSK 142 (330)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (330)
...+......+.+.|++++|+..|.+.... . -+.+..+|..+..+|.+.|++++|+..+.++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456677788889999999999999988765 1 02234566677777777777777777777777
Q ss_pred hcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHc
Q 037620 143 KRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179 (330)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (330)
+.. +.+...|..+..+|...|++++|...|+.....
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 664 445666777777777777777777777777664
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.47 E-value=4.1e-07 Score=60.70 Aligned_cols=88 Identities=13% Similarity=0.005 Sum_probs=72.4
Q ss_pred ccCChHHHHHHHHHHhhCC--CCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHH
Q 037620 22 KSRHVERAQEVFDKMKKRR--FDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEA 99 (330)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 99 (330)
..|++++|+..|+...+.+ -+.+...+..+..++...|++++|+..|++..+.. +-+...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 4688999999999998853 23456788899999999999999999999999885 33688888999999999999999
Q ss_pred HHHHHHHHhcC
Q 037620 100 VELFREMEATN 110 (330)
Q Consensus 100 ~~~~~~~~~~~ 110 (330)
+..+++.....
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999988764
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.44 E-value=1.3e-06 Score=70.14 Aligned_cols=146 Identities=10% Similarity=-0.030 Sum_probs=56.9
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHh
Q 037620 47 SYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLG 126 (330)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (330)
.+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ..+|..+..+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 3445555666666666666666666554 222221 111122222211110 124555555666
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHH-HHHcCCHHHHH
Q 037620 127 SEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHH-LIKAGRTEEAY 205 (330)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~ 205 (330)
+.|++++|...+.+..+.. +.+...+..+..+|...|++++|...|++..+... .+...+..+... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-DDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666655543 23445555566666666666666666665544321 122233333322 12234455555
Q ss_pred HHHHHhhc
Q 037620 206 SVFKRMSR 213 (330)
Q Consensus 206 ~~~~~~~~ 213 (330)
..|..+..
T Consensus 320 ~~~~~~l~ 327 (338)
T 2if4_A 320 EMYKGIFK 327 (338)
T ss_dssp --------
T ss_pred HHHHHhhC
Confidence 55555543
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.40 E-value=1e-06 Score=70.83 Aligned_cols=152 Identities=7% Similarity=-0.035 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHH
Q 037620 151 PTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRM 230 (330)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 230 (330)
..+..+...+.+.|++++|...|++..... |+... +...++.+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 445566666677777777777777776642 33221 112222333322211 1367788889
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHH-HHhcCchHH
Q 037620 231 FCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA-LRDEGMEET 309 (330)
Q Consensus 231 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~ 309 (330)
+.+.|++++|...+++.++.... +...|..+..+|...|++++|...|++.++.. +.+...+..+... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998887544 67888889999999999999999999987543 2234445545444 234566778
Q ss_pred HHHHHHHHHhcCCCC
Q 037620 310 AVVLAQKIDKLRKTP 324 (330)
Q Consensus 310 a~~~~~~~~~~~~~~ 324 (330)
+.++++++....+..
T Consensus 318 a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 318 QKEMYKGIFKGKDEG 332 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHhhCCCCCC
Confidence 888888887665533
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.39 E-value=7.7e-05 Score=64.17 Aligned_cols=172 Identities=8% Similarity=-0.014 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCc----------HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhC--
Q 037620 97 DEAVELFREMEATNCKPSPHIFCTLINGLGSEKR----------LSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSM-- 164 (330)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 164 (330)
++|++.++++...+ |-+..+|+.--.++...|+ ++++++.++.+.+.. +-+..+|+.-...+.+.+
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 45555666655554 4444555544444444444 566666666665553 334555555555555555
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhC---------
Q 037620 165 RINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAG-RTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYN--------- 234 (330)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 234 (330)
++++++..++++.+.... +..+|+.-..++...| .++++++.++++.+ ..+-+...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~--~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHH--HCCCCccHHHHHHHHHHhhccccccccc
Confidence 446666666666665433 5555655555555566 56666666666654 2233445555544444332
Q ss_pred -----CCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhH
Q 037620 235 -----AQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDD 274 (330)
Q Consensus 235 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 274 (330)
+.++++.+.+++.....+. +...|..+-..+.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 4577888888888876655 67778877777777666443
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.36 E-value=5e-05 Score=65.35 Aligned_cols=175 Identities=7% Similarity=-0.079 Sum_probs=137.1
Q ss_pred CChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccC----------hHHHHHHHHHHHhCCCCCChHHHHHHHHHHhcc
Q 037620 24 RHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKN----------LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSA 93 (330)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 93 (330)
...++|++.++.+.... |-+..+|+.--.++...|+ ++++++.++.+.+...+ +..+|..-.-++.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 34568899999998853 4456778776666666666 89999999999988643 888888888888888
Q ss_pred C--cHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccC-cHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhh-------
Q 037620 94 K--RYDEAVELFREMEATNCKPSPHIFCTLINGLGSEK-RLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWS------- 163 (330)
Q Consensus 94 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 163 (330)
+ +++++++.++++.+.+ +-+..+|+.-..++.+.| .++++++.+.++.+.. +.+...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 8 7799999999999987 778899998888888888 8999999999998875 45777888777776663
Q ss_pred -------CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHH
Q 037620 164 -------MRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEE 203 (330)
Q Consensus 164 -------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (330)
+.++++.+.++....... -+...|.-+-..+...+..++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCccc
Confidence 556888888888887643 367777777777766666443
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.34 E-value=3.1e-05 Score=53.13 Aligned_cols=110 Identities=12% Similarity=0.020 Sum_probs=51.6
Q ss_pred ChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhc----cCcHHHHH
Q 037620 25 HVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCS----AKRYDEAV 100 (330)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~ 100 (330)
++++|.+.|+...+.+ +.... +...|...+.+++|.++|++..+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4455555555555543 11112 4444444445555555555555443 33444444444444 44555555
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHhc----cCcHHHHHHHHHHHHhcC
Q 037620 101 ELFREMEATNCKPSPHIFCTLINGLGS----EKRLSEALQFFGQSKKRG 145 (330)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 145 (330)
++|++..+.+ ++..+..|...|.. .++.++|.+++++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555554443 23344444444444 445555555555544443
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.33 E-value=1.1e-05 Score=56.01 Aligned_cols=94 Identities=13% Similarity=0.026 Sum_probs=52.4
Q ss_pred HHHHHHHhhccChHHHHHHHHHHHhCCCCC------C-----hHHHHHHHHHHhccCcHHHHHHHHHHHHhc-------C
Q 037620 49 TILLEGWGQQKNLLSMNEVYREMKDDGFEP------D-----VVSYGIMINAHCSAKRYDEAVELFREMEAT-------N 110 (330)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~ 110 (330)
......+.+.|++++|+..|++.++..... + ...|..+..++.+.|++++|+..+++.++. +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 333444555556666666665555442110 1 225666666666666666666666666654 4
Q ss_pred CCCChHHH----HHHHHHHhccCcHHHHHHHHHHHHh
Q 037620 111 CKPSPHIF----CTLINGLGSEKRLSEALQFFGQSKK 143 (330)
Q Consensus 111 ~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (330)
|.+...| .....++...|++++|+..|++..+
T Consensus 95 -pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 -QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp -STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3344555 5566666666666666666666544
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.31 E-value=1.7e-05 Score=54.51 Aligned_cols=111 Identities=13% Similarity=0.014 Sum_probs=65.9
Q ss_pred cChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc----cCcHHHH
Q 037620 59 KNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGS----EKRLSEA 134 (330)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 134 (330)
+++++|.++|++..+.| .|+.. +...|...+.+++|+++|++..+.+ ++..+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45566666666666665 22222 5555555556666666666666554 44555556666655 5666666
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHh----hCChhHHHHHHHHHHHcC
Q 037620 135 LQFFGQSKKRGFEPEAPTYNAVVGAYCW----SMRINDAYRMMDEMRKCG 180 (330)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 180 (330)
.++|++..+.| ++..+..|...|.. .+++++|...+++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666666654 44555556666655 566666666666665554
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.27 E-value=1.9e-05 Score=54.91 Aligned_cols=95 Identities=17% Similarity=0.074 Sum_probs=51.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCCC-C-----Ch-----HHHHHHHHHHhccCcHHHHHHHHHHHHhc------
Q 037620 82 SYGIMINAHCSAKRYDEAVELFREMEATNCK-P-----SP-----HIFCTLINGLGSEKRLSEALQFFGQSKKR------ 144 (330)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 144 (330)
.+......+...|++++|+..|++.++.... | +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3455566677788888888888887765411 0 11 25555555555666666665555555543
Q ss_pred -CCCCChhhH----HHHHHHHHhhCChhHHHHHHHHHH
Q 037620 145 -GFEPEAPTY----NAVVGAYCWSMRINDAYRMMDEMR 177 (330)
Q Consensus 145 -~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~ 177 (330)
. +.+...| .....++...|++++|+..|++..
T Consensus 93 ~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 93 LN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp TT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 1122333 444444444444555444444443
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.24 E-value=6.6e-06 Score=69.11 Aligned_cols=124 Identities=10% Similarity=-0.046 Sum_probs=65.6
Q ss_pred HhhccChHHHHHHHHHHHhC-----CC-CC-ChHHHHHHHHHHhccCcHHHHHHHHHHHHhc-------CCCCChHHHHH
Q 037620 55 WGQQKNLLSMNEVYREMKDD-----GF-EP-DVVSYGIMINAHCSAKRYDEAVELFREMEAT-------NCKPSPHIFCT 120 (330)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ 120 (330)
+...|++++|+.++++.++. |. .| ...+++.|..+|...|++++|..++++.++. +.+....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34566777777666665543 10 11 2345666666676777777666666665431 11223445566
Q ss_pred HHHHHhccCcHHHHHHHHHHHHh-----cC--CCCChhhHHHHHHHHHhhCChhHHHHHHHHHHH
Q 037620 121 LINGLGSEKRLSEALQFFGQSKK-----RG--FEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRK 178 (330)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~-----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (330)
|...|...|++++|..++++... .| .+....+.+.+..++...+.+++|+.++..+++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665543 12 111122334444455555555666655555543
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.24 E-value=1.1e-06 Score=57.69 Aligned_cols=92 Identities=15% Similarity=0.050 Sum_probs=61.7
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC-------hh
Q 037620 220 TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPP-------GQ 292 (330)
Q Consensus 220 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~ 292 (330)
+...+..+...+...|++++|...|++..+.... +...+..+..++...|++++|+..+++.++.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 4456667777777888888888888877766443 56677777778888888888888888877543 33 34
Q ss_pred hHHHHHHHHHhcCchHHHHHHH
Q 037620 293 LFSNLKQALRDEGMEETAVVLA 314 (330)
Q Consensus 293 ~~~~l~~~~~~~g~~~~a~~~~ 314 (330)
.+..+..++...|+.+.|...+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHH
Confidence 4555555566656555554443
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.23 E-value=5.8e-06 Score=69.43 Aligned_cols=126 Identities=6% Similarity=-0.043 Sum_probs=96.5
Q ss_pred HHHccCChHHHHHHHHHHhhC---CCCC----ChHHHHHHHHHHhhccChHHHHHHHHHHHhC-----CC--CCChHHHH
Q 037620 19 TLCKSRHVERAQEVFDKMKKR---RFDP----DIKSYTILLEGWGQQKNLLSMNEVYREMKDD-----GF--EPDVVSYG 84 (330)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~ 84 (330)
.+...|++++|+.++++.++. -+.| ...+++.|...|...|++++|+.++++.++. |. +-...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999887652 1112 3467899999999999999999999987653 21 12356788
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHhc-----C--CCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 85 IMINAHCSAKRYDEAVELFREMEAT-----N--CKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
.|...|...|++++|..++++..+. | .|....+...+..++...+.+++|+..+.++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887642 3 2233455667778888899999999999888653
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.19 E-value=1.4e-05 Score=52.35 Aligned_cols=63 Identities=16% Similarity=0.116 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 81 VSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
..+..+...+...|++++|++.|++..+.. +.+..++..+..++...|++++|.+.+++..+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344444445555555555555555554443 334444555555555555555555555555443
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.12 E-value=4.8e-05 Score=47.57 Aligned_cols=56 Identities=20% Similarity=0.326 Sum_probs=21.8
Q ss_pred HHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 037620 86 MINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSK 142 (330)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (330)
+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..
T Consensus 15 la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 15 LGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333334444444444444433332 2233333333344444444444444444333
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.11 E-value=3.5e-05 Score=48.23 Aligned_cols=80 Identities=16% Similarity=0.135 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 037620 45 IKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124 (330)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (330)
...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3455555666666666666666666666553 2245556666666666677777777666666554 4445555555444
Q ss_pred Hh
Q 037620 125 LG 126 (330)
Q Consensus 125 ~~ 126 (330)
+.
T Consensus 87 ~~ 88 (91)
T 1na3_A 87 KQ 88 (91)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.10 E-value=2.2e-05 Score=51.92 Aligned_cols=78 Identities=13% Similarity=0.084 Sum_probs=39.3
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 037620 64 MNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKK 143 (330)
Q Consensus 64 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (330)
|+..|++..+.. +.+...+..+..++...|++++|+..|++..+.. +.+...+..+..+|...|++++|...+++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555554442 2244455555555555555555555555555443 33444555555555555555555555554443
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.10 E-value=3.1e-05 Score=51.19 Aligned_cols=77 Identities=9% Similarity=-0.004 Sum_probs=34.4
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 037620 29 AQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREME 107 (330)
Q Consensus 29 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 107 (330)
|+..|+...+.. +.+...+..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++..
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444321 2234444444444444555555555554444432 1233444444444444555555555444443
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.09 E-value=2e-05 Score=54.65 Aligned_cols=90 Identities=16% Similarity=0.129 Sum_probs=47.0
Q ss_pred ChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCc----------HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccC
Q 037620 60 NLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKR----------YDEAVELFREMEATNCKPSPHIFCTLINGLGSEK 129 (330)
Q Consensus 60 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (330)
.+++|.+.++...+.. +.+...|..+..++...++ +++|+..|++.++.+ |.+..+|..+..+|...|
T Consensus 17 ~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhc
Confidence 3444444554444443 2244444444444444433 346666666666655 445556666666665543
Q ss_pred -----------cHHHHHHHHHHHHhcCCCCChhhH
Q 037620 130 -----------RLSEALQFFGQSKKRGFEPEAPTY 153 (330)
Q Consensus 130 -----------~~~~a~~~~~~~~~~~~~~~~~~~ 153 (330)
++++|.+.|++..+. .|+...|
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y 127 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHY 127 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHH
Confidence 566666666666655 3444433
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.08 E-value=1.9e-05 Score=54.76 Aligned_cols=99 Identities=11% Similarity=0.032 Sum_probs=75.4
Q ss_pred hccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcH----------HHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 037620 91 CSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRL----------SEALQFFGQSKKRGFEPEAPTYNAVVGAY 160 (330)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (330)
.+.+.+++|.+.++...+.+ |.+...|..+..++...+++ ++|+..|++.++.. +.+...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 34567889999999998887 77889999888888888765 58888888888875 44667888888888
Q ss_pred HhhC-----------ChhHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 037620 161 CWSM-----------RINDAYRMMDEMRKCGIGPNTRTYDIVLH 193 (330)
Q Consensus 161 ~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 193 (330)
...| ++++|...|++..+. .|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 8764 788888888888774 455555544443
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.91 E-value=6e-05 Score=48.38 Aligned_cols=64 Identities=14% Similarity=0.129 Sum_probs=42.9
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 220 TVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 220 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
+...+..+..++...|++++|...|++..+.... +...|..+..+|...|++++|...+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455666667777777777777777776665443 455666677777777777777777776654
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.88 E-value=0.0001 Score=47.24 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 037620 80 VVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSK 142 (330)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (330)
...+..+..++...|++++|+..|++..+.+ +.+..+|..+..+|...|++++|.+.+++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444455555555554444443 3334444444444444555555444444443
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.70 E-value=0.0016 Score=51.89 Aligned_cols=75 Identities=11% Similarity=0.042 Sum_probs=56.6
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHH
Q 037620 217 TEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFS 295 (330)
Q Consensus 217 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 295 (330)
.+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++.... .|...+|.
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 35566777777766777788888888888888875 56667777777888888888888888888765 46666654
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.68 E-value=0.00014 Score=46.34 Aligned_cols=59 Identities=10% Similarity=0.199 Sum_probs=39.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCccHH-HHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 037620 227 VVRMFCYNAQVDMAMRIWDEMKARGVLPVMH-MYSTLINSLCHEDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 227 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 286 (330)
....+...|++++|...+++..+.... +.. .+..+..++...|++++|...|++.++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344556667777777777777665433 445 66666777777777777777777776653
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.64 E-value=0.0021 Score=51.27 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 037620 184 NTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR 250 (330)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 250 (330)
+..++..+...+...|++++|...+++.... .|+...|..+...+.-.|++++|.+.+++....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~L---n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDL---EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4445555544444455555555555555541 244444445555555555555555555555544
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.45 E-value=0.00065 Score=56.18 Aligned_cols=88 Identities=10% Similarity=0.018 Sum_probs=65.4
Q ss_pred HcCCHHHHHHHHHHhhcC--CCC---CCc-hHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-----CC-Cc-cHHHHHHHH
Q 037620 197 KAGRTEEAYSVFKRMSRK--PGT---EPT-VSTYEIVVRMFCYNAQVDMAMRIWDEMKAR-----GV-LP-VMHMYSTLI 263 (330)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~--~~~---~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~ 263 (330)
..|++++|..++++..+. .-. .|+ ..+++.|..+|...|++++|+.++++..+. |. .| ...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357789999888876541 111 222 357888999999999999999999887642 32 22 245788899
Q ss_pred HHHhccCChhHHHHHHHHHHh
Q 037620 264 NSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~~~~ 284 (330)
..|...|++++|..++++.++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998864
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.43 E-value=0.00044 Score=57.20 Aligned_cols=61 Identities=10% Similarity=-0.030 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhc-----C--CCCChhhHHHHHHHHHhhCChhHHHHHHHHH
Q 037620 116 HIFCTLINGLGSEKRLSEALQFFGQSKKR-----G--FEPEAPTYNAVVGAYCWSMRINDAYRMMDEM 176 (330)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (330)
.+++.|..+|...|++++|..++++.... | .+....+++.|...|...|++++|..++++.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34444455555555555555544443321 1 1112233455555555555555555555544
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.40 E-value=0.0017 Score=53.74 Aligned_cols=94 Identities=9% Similarity=-0.006 Sum_probs=71.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCC--CCCC----chHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-----CC-Cc-cHH
Q 037620 191 VLHHLIKAGRTEEAYSVFKRMSRKP--GTEP----TVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR-----GV-LP-VMH 257 (330)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~ 257 (330)
.+..+...|++++|..++++..... -..| ...+++.+...|...|++++|+.++++..+. |. .| ...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3455667899999999999887521 1122 2357888999999999999999999887642 21 22 245
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHh
Q 037620 258 MYSTLINSLCHEDKLDDACKYFQEMLD 284 (330)
Q Consensus 258 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 284 (330)
+++.|...|...|++++|..++++.++
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 788899999999999999999998864
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.39 E-value=0.0022 Score=40.20 Aligned_cols=68 Identities=12% Similarity=0.070 Sum_probs=52.9
Q ss_pred CCchHHHHHHHHHHHhCCC---HHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 037620 218 EPTVSTYEIVVRMFCYNAQ---VDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 218 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 286 (330)
+.+...+..+..++...++ .++|..++++..+.... ++.....+...+.+.|++++|+..|+++++..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4456667777777754444 68899999998887665 77778888888889999999999999998754
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.38 E-value=0.0012 Score=54.68 Aligned_cols=87 Identities=8% Similarity=-0.017 Sum_probs=41.6
Q ss_pred hccCcHHHHHHHHHHHHhcC---C----CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc-----C--CCCChhhHHHH
Q 037620 91 CSAKRYDEAVELFREMEATN---C----KPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR-----G--FEPEAPTYNAV 156 (330)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l 156 (330)
.+.|++++|+.++++..+.. + +....+++.+..+|...|++++|+.+++++... | .+....+++.|
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 34455555555555554321 1 112344555555555555555555555544321 1 11122345555
Q ss_pred HHHHHhhCChhHHHHHHHHHH
Q 037620 157 VGAYCWSMRINDAYRMMDEMR 177 (330)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~ 177 (330)
...|...|++++|..++++..
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHH
Confidence 556666666666665555543
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.35 E-value=0.01 Score=53.56 Aligned_cols=153 Identities=9% Similarity=0.072 Sum_probs=83.4
Q ss_pred HhccCcHHHHHH-HHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhH
Q 037620 90 HCSAKRYDEAVE-LFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRIND 168 (330)
Q Consensus 90 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (330)
....+++++|.+ ++.. + ++......++..+.+.|.++.|.++.+. . ..-.......|+++.
T Consensus 609 ~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHH
Confidence 344566666655 3311 1 1012225566666777777777665421 1 111233456777777
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 037620 169 AYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMK 248 (330)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 248 (330)
|.++.+.+ .+...|..+...+.+.++++.|...|.++.. |..+...+...|+.+...++-+...
T Consensus 671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 77765332 3567777888888888888888888877643 2334444455566655555544444
Q ss_pred hCCCCccHHHHHHHHHHHhccCChhHHHHHHHHH
Q 037620 249 ARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEM 282 (330)
Q Consensus 249 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 282 (330)
..|. ++....+|.+.|++++|++++.++
T Consensus 735 ~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 735 TTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4321 233333444455555555555443
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.34 E-value=0.0054 Score=38.42 Aligned_cols=65 Identities=8% Similarity=0.072 Sum_probs=34.2
Q ss_pred cHHHHHHHHHHHHHcCC---HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 037620 184 NTRTYDIVLHHLIKAGR---TEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR 250 (330)
Q Consensus 184 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 250 (330)
+...+..+..++...++ .++|..++++..+ -.+-++.....+...+...|++++|...|+.+.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44455555555543333 4566666665554 12233444555555556666666666666665554
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.34 E-value=0.003 Score=39.90 Aligned_cols=55 Identities=13% Similarity=0.072 Sum_probs=25.0
Q ss_pred HHhhccChHHHHHHHHHHHhCCCCCChH-HHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 54 GWGQQKNLLSMNEVYREMKDDGFEPDVV-SYGIMINAHCSAKRYDEAVELFREMEAT 109 (330)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 109 (330)
.+...|++++|+..|++..+.. +.+.. .+..+..++...|++++|.+.|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444445555555555444432 11333 4444444444445555555555444443
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.24 E-value=0.0046 Score=55.84 Aligned_cols=159 Identities=11% Similarity=0.057 Sum_probs=96.2
Q ss_pred HHHhccCcHHHHHH-HHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCH
Q 037620 123 NGLGSEKRLSEALQ-FFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRT 201 (330)
Q Consensus 123 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (330)
......+++++|.+ ++..+ ++......++..+.+.|.++.|..+.+. .. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCH
Confidence 33445788888876 44221 1122337777888889999988876532 11 113345678999
Q ss_pred HHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-------CccHHHHHHHHHHHhccCChhH
Q 037620 202 EEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV-------LPVMHMYSTLINSLCHEDKLDD 274 (330)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~ 274 (330)
++|+++.+.+ .+...|..+...+.+.++++.|.+.|..+..... .-+......+.......|++..
T Consensus 669 ~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~ 741 (814)
T 3mkq_A 669 TLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNL 741 (814)
T ss_dssp HHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHH
Confidence 9999987654 3567999999999999999999999998753210 0122223333344444444444
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHH
Q 037620 275 ACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQ 315 (330)
Q Consensus 275 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 315 (330)
|..++.+. | -+...++.|.+.+++++|..+.+
T Consensus 742 A~~~~~~~---g------~~~~a~~~~~~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 742 AFNAYWIA---G------DIQGAKDLLIKSQRFSEAAFLGS 773 (814)
T ss_dssp HHHHHHHH---T------CHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHc---C------CHHHHHHHHHHcCChHHHHHHHH
Confidence 44443332 1 12334555666666666655554
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.17 E-value=0.05 Score=41.77 Aligned_cols=107 Identities=12% Similarity=0.176 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhhcCCCCCCc---hHHHHHHHHHHHh-----CCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcc-CC
Q 037620 201 TEEAYSVFKRMSRKPGTEPT---VSTYEIVVRMFCY-----NAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHE-DK 271 (330)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~ 271 (330)
...|...+++..+ +.|+ ...|..+...|.. -|+.++|.+.|++.++.+..-+..++..+.+.++.. |+
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 4567777777766 4444 5578888888888 499999999999998876543467777788888874 99
Q ss_pred hhHHHHHHHHHHhcCCC--CChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 037620 272 LDDACKYFQEMLDIGIR--PPGQLFSNLKQALRDEGMEETAVVLAQKID 318 (330)
Q Consensus 272 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (330)
.+++.+.+++.+..... |+....+. +.-++|..++.++.
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~lan~--------~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKLLVI--------LSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHHHHH--------HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHH--------HHHHHHHHHHHHhH
Confidence 99999999999986655 54433332 23345555555443
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.13 E-value=0.0029 Score=43.38 Aligned_cols=83 Identities=12% Similarity=0.071 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCC---CHHHHHHHHHHHHhCCCCc--cHHHHHHHHHHHhccCChhH
Q 037620 200 RTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNA---QVDMAMRIWDEMKARGVLP--VMHMYSTLINSLCHEDKLDD 274 (330)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~ 274 (330)
....+.+.|.+.... ..++..+...+..++++++ +.+++..++++..+.+ .| +...+..+.-++.+.|++++
T Consensus 13 ~l~~~~~~y~~e~~~--~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHcc--CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHH
Confidence 345566666665542 2356677777777888887 6668888888888764 23 34556666778888999999
Q ss_pred HHHHHHHHHhc
Q 037620 275 ACKYFQEMLDI 285 (330)
Q Consensus 275 a~~~~~~~~~~ 285 (330)
|.+.++.+++.
T Consensus 90 A~~y~~~lL~i 100 (152)
T 1pc2_A 90 ALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999988865
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.07 E-value=0.019 Score=39.41 Aligned_cols=82 Identities=15% Similarity=0.109 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC---cHHHHHHHHHHHHhcCCCC--ChHHHHHHHHHHhccCcHHHHH
Q 037620 61 LLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAK---RYDEAVELFREMEATNCKP--SPHIFCTLINGLGSEKRLSEAL 135 (330)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~ 135 (330)
...+.+-|.+....+. ++..+...+.-++++.+ +.++++.+++++.+.+ .| +...+..+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3444555555544442 45555555666666655 4556666666666554 23 3444555555666666666666
Q ss_pred HHHHHHHhc
Q 037620 136 QFFGQSKKR 144 (330)
Q Consensus 136 ~~~~~~~~~ 144 (330)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666666665
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.06 E-value=0.0091 Score=38.28 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=9.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHH
Q 037620 83 YGIMINAHCSAKRYDEAVELFREME 107 (330)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~ 107 (330)
+..+..++.+.|+++.|+..++++.
T Consensus 49 ~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 49 LDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3333334444444444444444333
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.94 E-value=0.011 Score=40.03 Aligned_cols=113 Identities=12% Similarity=0.091 Sum_probs=73.4
Q ss_pred CcHHHHHHHHHHHHHcCCH------HHHHHHHHHhhcCCCCCCchH-HHHHHHHH------HHhCCCHHHHHHHHHHHHh
Q 037620 183 PNTRTYDIVLHHLIKAGRT------EEAYSVFKRMSRKPGTEPTVS-TYEIVVRM------FCYNAQVDMAMRIWDEMKA 249 (330)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~~~~~~a~~~~~~~~~ 249 (330)
-|..+|-..+...-+.|++ ++..++|++... .++|+.. .|..-+.. +...++.++|.++|+.+++
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3667777777777777888 788888887775 4555431 22222221 2234688888888888866
Q ss_pred CCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 037620 250 RGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQ 299 (330)
Q Consensus 250 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 299 (330)
.+-.. ...|....+--.+.|+...|.+++.+.+..+.. +...+...++
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~ 136 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALR 136 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHH
Confidence 53333 666766677677888888888888888866533 3334444443
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.91 E-value=0.0081 Score=38.54 Aligned_cols=68 Identities=10% Similarity=0.060 Sum_probs=55.6
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC------CCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 037620 219 PTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARG------VLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 219 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 286 (330)
.+...+..+...+...|++..|...++...+.. -.+....+..+..++.+.|+++.|...++++.+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 345566788899999999999999999877631 12356788999999999999999999999998753
No 227
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.82 E-value=5.5e-07 Score=73.16 Aligned_cols=222 Identities=13% Similarity=0.100 Sum_probs=113.1
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 037620 11 PDFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAH 90 (330)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (330)
.+|..|..+..+.+++.+|++-| .+. -|+..|..++....+.|.+++..+.+....+..- ++..=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHH
Confidence 34555666666666666555433 111 1445566666666666666666666655554422 222333566666
Q ss_pred hccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHH
Q 037620 91 CSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAY 170 (330)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (330)
++.++..+..+++ ..|+..-...+..-|...|.++.|.-+|..+. -|.-|..++.+.|++..|.
T Consensus 127 Ak~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 127 AKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp HTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSST
T ss_pred HhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHHH
Confidence 6666654433322 12444444455555555555555554443322 1222333344444444443
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 037620 171 RMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR 250 (330)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 250 (330)
+.- ++ ..++.||-.+-.+|...+.+.-|.-.--.+.-.... ...++..|...|.+++.+.+++.-...
T Consensus 191 daA---rK---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvhade------L~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 191 DGA---RK---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE------LEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp TTT---TT---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC------CSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHH---Hh---cCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH------HHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 221 11 125566777777777777766665544444331111 123455566677777777766665533
Q ss_pred CCCccHHHHHHHHHHHhcc
Q 037620 251 GVLPVMHMYSTLINSLCHE 269 (330)
Q Consensus 251 ~~~~~~~~~~~l~~~~~~~ 269 (330)
. .....+|+.|.-.|++-
T Consensus 259 E-rAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 259 E-RAHMGMFTELAILYSKF 276 (624)
T ss_dssp T-TCCHHHHHHHHHHHHSS
T ss_pred C-chhHHHHHHHHHHHHhc
Confidence 2 23555666666666554
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.57 E-value=0.019 Score=37.90 Aligned_cols=89 Identities=15% Similarity=0.097 Sum_probs=50.8
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHH---HHHHHHHHHhCCCC-ccHHHHHHHHHHHhccC
Q 037620 195 LIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDM---AMRIWDEMKARGVL-PVMHMYSTLINSLCHED 270 (330)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 270 (330)
-........+.+.|...... + .++..+-..+..++.++..... ++.+++++...+.+ -.......+.-++.+.|
T Consensus 11 ~~~~~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 11 LVSVEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh
Confidence 33344445555555554431 2 2555555566666676665554 77777776665311 12333444555777777
Q ss_pred ChhHHHHHHHHHHhc
Q 037620 271 KLDDACKYFQEMLDI 285 (330)
Q Consensus 271 ~~~~a~~~~~~~~~~ 285 (330)
++++|.+.++.+++.
T Consensus 89 ~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 89 EYEKALKYVRGLLQT 103 (126)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 777777777777764
No 229
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.48 E-value=0.095 Score=34.91 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=28.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcC
Q 037620 225 EIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIG 286 (330)
Q Consensus 225 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 286 (330)
...+..+...|.-++..+++.++.. +..|++...-.+..+|.+.|+..+|.+++.++-+.|
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3444444455555555555544322 123344444444555555555555555555554444
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.47 E-value=0.085 Score=35.87 Aligned_cols=101 Identities=8% Similarity=0.034 Sum_probs=49.4
Q ss_pred CChhhHHHHHHHHHccCCh------HHHHHHHHHHhhCCCCCChH-HHHHHHH------HHhhccChHHHHHHHHHHHhC
Q 037620 8 QELPDFNRLIDTLCKSRHV------ERAQEVFDKMKKRRFDPDIK-SYTILLE------GWGQQKNLLSMNEVYREMKDD 74 (330)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~~~~~~a~~~~~~~~~~ 74 (330)
-|..+|-..+...-+.|+. ++.+++|++... .+||+.. .|...+. .+...++.++|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3455566666666666666 666666666655 3444421 1111111 012224555555555555443
Q ss_pred CCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcC
Q 037620 75 GFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATN 110 (330)
Q Consensus 75 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 110 (330)
+-.- ...|......-.+.|+...|.+++...+..+
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 2121 4444444455555555555555555555544
No 231
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.40 E-value=0.21 Score=45.19 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=7.6
Q ss_pred HcCCHHHHHHHHHHhh
Q 037620 197 KAGRTEEAYSVFKRMS 212 (330)
Q Consensus 197 ~~~~~~~a~~~~~~~~ 212 (330)
..|+.+.+..+++.+.
T Consensus 536 ~~g~~e~~~~li~~L~ 551 (963)
T 4ady_A 536 NYGRQELADDLITKML 551 (963)
T ss_dssp TTTCGGGGHHHHHHHH
T ss_pred hCCChHHHHHHHHHHH
Confidence 3445555554444444
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.16 Score=35.78 Aligned_cols=100 Identities=14% Similarity=0.147 Sum_probs=47.7
Q ss_pred hccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHH
Q 037620 91 CSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAY 170 (330)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (330)
...|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3445555555554443 2344555555555555555555555554431 223333344455555444
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 037620 171 RMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRM 211 (330)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (330)
.+-+.....| -++.....+...|+++++.++|.+.
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 4443333332 1233333444555666666555543
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.17 Score=35.72 Aligned_cols=128 Identities=10% Similarity=0.189 Sum_probs=82.3
Q ss_pred HHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHH
Q 037620 159 AYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVD 238 (330)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (330)
.....|+++.|.++.+.+ .+...|..|.......|+++-|...|.+... +..+.-.|...|+.+
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHH
Confidence 345678888888777655 2567888888888888888888888887653 344555566677777
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHH
Q 037620 239 MAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKI 317 (330)
Q Consensus 239 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 317 (330)
...++-+.....| -++.....+...|+++++.++|.+. |-.| ..+......|-.+.|.++.+++
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~------eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLP------LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHH------HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChH------HHHHHHHHcCcHHHHHHHHHHh
Confidence 6666655554443 1455555666778888888887554 3211 1122223456667777777665
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.20 E-value=0.096 Score=40.24 Aligned_cols=85 Identities=9% Similarity=0.042 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHhCCCCCC---hHHHHHHHHHHhc-----cCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhcc-CcH
Q 037620 61 LLSMNEVYREMKDDGFEPD---VVSYGIMINAHCS-----AKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSE-KRL 131 (330)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 131 (330)
...|...+++..+. .|+ ...|..+...|.. -|+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 35666677777765 444 5577788888877 488888999888888876212477777788888774 888
Q ss_pred HHHHHHHHHHHhcCCC
Q 037620 132 SEALQFFGQSKKRGFE 147 (330)
Q Consensus 132 ~~a~~~~~~~~~~~~~ 147 (330)
+++.+.+++.......
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 8888888888887544
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.08 E-value=0.17 Score=33.75 Aligned_cols=148 Identities=14% Similarity=0.050 Sum_probs=76.1
Q ss_pred HHHHHHH--HHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 037620 13 FNRLIDT--LCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAH 90 (330)
Q Consensus 13 ~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (330)
...|+.+ +.-.|.+++..++..+.... .+..-||-+|.-....-+-+-..++++..-+. .|.
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi---------- 71 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL---------- 71 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------
Confidence 3344443 34467778888887777663 24555555555444444444444444443221 111
Q ss_pred hccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHH
Q 037620 91 CSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAY 170 (330)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (330)
...|+.......+-.+ ..+...+...+......|..++-.+++..+... .+|++...-.+..+|.+.|+..++.
T Consensus 72 s~C~NlKrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~ 145 (172)
T 1wy6_A 72 DKCQNLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDAT 145 (172)
T ss_dssp GGCSCTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhhcHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHH
Confidence 1122333333333221 123344455555666666666666666664332 2455666666666666666666666
Q ss_pred HHHHHHHHcCCC
Q 037620 171 RMMDEMRKCGIG 182 (330)
Q Consensus 171 ~~~~~~~~~~~~ 182 (330)
+++.+.-+.|++
T Consensus 146 eLl~~AC~kG~k 157 (172)
T 1wy6_A 146 TLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHTTCH
T ss_pred HHHHHHHHhhhH
Confidence 666666666543
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.02 E-value=0.096 Score=34.55 Aligned_cols=65 Identities=12% Similarity=0.055 Sum_probs=27.7
Q ss_pred ChHHHHHHHHHHhccCcHHH---HHHHHHHHHhcCCCC--ChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 79 DVVSYGIMINAHCSAKRYDE---AVELFREMEATNCKP--SPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
+..+-..+.-++++..+... ++.+++.+...+ .| .......|.-++.+.|+++.|.+.++.+.+.
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 44443344444444443322 444444444432 11 2223333344445555555555555555444
No 237
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.68 E-value=0.96 Score=39.31 Aligned_cols=118 Identities=10% Similarity=0.042 Sum_probs=71.2
Q ss_pred CCHHHHHHHHHHhhcCCCCCCchH--HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHH
Q 037620 199 GRTEEAYSVFKRMSRKPGTEPTVS--TYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDAC 276 (330)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 276 (330)
.+.+.|...+....+.....+... ....+.......+...++...+....... ++.....-.+....+.|+++.|.
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 377888888888765333322221 22233333344453556666666654432 23333444555556789999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHh
Q 037620 277 KYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 319 (330)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (330)
..|+.|..... ......--+.+++...|+.++|..+++.+..
T Consensus 306 ~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99988864321 1233333466788889999999999988754
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.47 E-value=1.5 Score=40.03 Aligned_cols=256 Identities=8% Similarity=-0.034 Sum_probs=139.1
Q ss_pred HHccCChHHHHHHHHHHhhCCCCCChH--HHHHHHHHHhhccChHHHHHHHHHHHhCCC-------CCChHHHHHHHHH-
Q 037620 20 LCKSRHVERAQEVFDKMKKRRFDPDIK--SYTILLEGWGQQKNLLSMNEVYREMKDDGF-------EPDVVSYGIMINA- 89 (330)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~ll~~- 89 (330)
....|+.++++.+++.....+...+.. .=..+.-+....|..+++..++.......- .+....-..+.-+
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 445677777777776654421112222 222333445555665667777766654311 0111112223233
Q ss_pred -HhccCcHHHHHHHHHHHHhcCCCCCh--HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHH--HHHHHHHhhC
Q 037620 90 -HCSAKRYDEAVELFREMEATNCKPSP--HIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYN--AVVGAYCWSM 164 (330)
Q Consensus 90 -~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~ 164 (330)
+...++ +++...+..+.... .+.. ..-..+...+...|+.+....++..+.+.. +..+.. .+.-++...|
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 333333 45566666655432 1111 122234455667888888888888776542 233333 3333444778
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHHH--HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHH
Q 037620 165 RINDAYRMMDEMRKCGIGPNTRTY--DIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMR 242 (330)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 242 (330)
+.+.+..+++.+.... .|....- .++..+|+..|+......++..+..+ ...++.-...+.-++...|+.+.+.+
T Consensus 539 ~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 539 RQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp CGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred ChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 9999999988887642 2222222 23445677889988888899988763 22334433334444555677777777
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHhccCCh-hHHHHHHHHHHh
Q 037620 243 IWDEMKARGVLPVMHMYSTLINSLCHEDKL-DDACKYFQEMLD 284 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 284 (330)
+++.+.+.+ .|....-..+.-+....|+. .+++.++..+..
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 777666543 34444333444444444443 577888888864
No 239
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.47 E-value=0.89 Score=42.92 Aligned_cols=132 Identities=13% Similarity=0.139 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHH
Q 037620 116 HIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEA----PTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIV 191 (330)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (330)
.-|..++..+.+.+.++.+.++-....+...+.+. ..|..+.+.+...|++++|...+-.+.....+ ...+..+
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHH
Confidence 44667777777788888777777666554322121 24677777888888888888777777654432 3455555
Q ss_pred HHHHHHcCC------------HHHHHHHHHHhhcCC-CCCCchHHHHHHHHHHHhCCCHHH-HHHHHHHHHh
Q 037620 192 LHHLIKAGR------------TEEAYSVFKRMSRKP-GTEPTVSTYEIVVRMFCYNAQVDM-AMRIWDEMKA 249 (330)
Q Consensus 192 ~~~~~~~~~------------~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~ 249 (330)
+...+..|+ .++..+++....+.. .....+.-|..|-.-+...|++.. |..+|+.+.+
T Consensus 978 V~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 978 VNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 555554443 444555554322201 111112234555555566676664 4445565543
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.24 E-value=1.1 Score=37.25 Aligned_cols=259 Identities=9% Similarity=0.083 Sum_probs=146.5
Q ss_pred cCChHHHHHHHHHHhh-----CCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHh----cc
Q 037620 23 SRHVERAQEVFDKMKK-----RRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHC----SA 93 (330)
Q Consensus 23 ~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~ 93 (330)
.|+++.|++.+-.+.+ .+..........++..|...++++...+.+..+....-. .......++..+. ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC
Confidence 3678888887766553 234445677888999999999999998888777654222 1222233333222 22
Q ss_pred CcHHH--HHHHHHHHHh--cC-CCC---ChHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CCCCC---hhhHHHHHHHH
Q 037620 94 KRYDE--AVELFREMEA--TN-CKP---SPHIFCTLINGLGSEKRLSEALQFFGQSKKR--GFEPE---APTYNAVVGAY 160 (330)
Q Consensus 94 ~~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~ 160 (330)
...+. -..+.+.+.. .| +-. .......|...+...|++.+|..++..+... +..+. ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22222 1222211111 11 111 1233466788999999999999999988643 21111 34566778889
Q ss_pred HhhCChhHHHHHHHHHHH----cCCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHH----HHHH
Q 037620 161 CWSMRINDAYRMMDEMRK----CGIGPN--TRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEI----VVRM 230 (330)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----l~~~ 230 (330)
...+++..|..++.++.. ....|+ ...+...+..+...+++.+|...|..+........+...+.. ++.+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~ 267 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYF 267 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 999999999999988743 222222 235566777788889999998888877642222223222221 1111
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcc--CChhHHHHHHHHH
Q 037620 231 FCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHE--DKLDDACKYFQEM 282 (330)
Q Consensus 231 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~ 282 (330)
..-.+....-..+..........++...|..++.+|... .+++.+.+.|...
T Consensus 268 ~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 268 LVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSS
T ss_pred HHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHH
Confidence 122222122222333333222234667788888887653 3455555555443
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.21 E-value=1.1 Score=39.87 Aligned_cols=128 Identities=9% Similarity=0.062 Sum_probs=72.9
Q ss_pred HHHHHHHHhccCc-HHHHHHHHHHHHhcCCCCChHHH-HHHHHHHhccC-cHHHHHHHHHHHHhc------CCCC-Ch--
Q 037620 83 YGIMINAHCSAKR-YDEAVELFREMEATNCKPSPHIF-CTLINGLGSEK-RLSEALQFFGQSKKR------GFEP-EA-- 150 (330)
Q Consensus 83 ~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~~-~~-- 150 (330)
...++..+...++ .+.|..+|+++.... +.....+ ..++..+...+ +--+|.+++.+..+. ..++ +.
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~-p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKD-PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhC-CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 3445555555555 577888888877764 2222222 22333333332 223344444443321 1111 11
Q ss_pred --------hhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 037620 151 --------PTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMS 212 (330)
Q Consensus 151 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (330)
.....-...+...|+++-|+.+-++..... +.+-.+|..|..+|...|+++.|+-.+..+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 112222344566788888888888877752 3356788888888888888888888888764
No 242
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.16 E-value=7.6e-05 Score=61.05 Aligned_cols=88 Identities=11% Similarity=0.072 Sum_probs=58.3
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 037620 219 PTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLK 298 (330)
Q Consensus 219 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 298 (330)
-++.||..+-.+|...+.+.-|.-.--.++-. +.-...++..|-..|-+++-+.+++.-+... +.....|+.|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHH
Confidence 35678999999999999988776665444422 1224456677888899998888888776322 34566677776
Q ss_pred HHHHhcCchHHHHHH
Q 037620 299 QALRDEGMEETAVVL 313 (330)
Q Consensus 299 ~~~~~~g~~~~a~~~ 313 (330)
-.|.+- ++++..+-
T Consensus 271 ILYsKY-~PeKlmEH 284 (624)
T 3lvg_A 271 ILYSKF-KPQKMREH 284 (624)
T ss_dssp HHHHSS-CTTHHHHH
T ss_pred HHHHhc-CHHHHHHH
Confidence 666654 34443333
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.14 E-value=0.6 Score=38.00 Aligned_cols=68 Identities=15% Similarity=0.189 Sum_probs=36.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHH-----hcCCCCChhhH
Q 037620 226 IVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEML-----DIGIRPPGQLF 294 (330)
Q Consensus 226 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~ 294 (330)
.++..+...|+++++...+..+....+. +...+..++.++.+.|+..+|++.|++.. +.|+.|+..+-
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3444455555565555555555544322 44455555666666666666665555543 23555555443
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.84 E-value=0.3 Score=43.26 Aligned_cols=125 Identities=11% Similarity=0.030 Sum_probs=81.0
Q ss_pred HHHHHHHhhccC-hHHHHHHHHHHHhCCCCCChHHH--HHHHHHHhccC-cHHHHHHHHHHHHhc------CCCC-Ch--
Q 037620 49 TILLEGWGQQKN-LLSMNEVYREMKDDGFEPDVVSY--GIMINAHCSAK-RYDEAVELFREMEAT------NCKP-SP-- 115 (330)
Q Consensus 49 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~-~~~~a~~~~~~~~~~------~~~~-~~-- 115 (330)
..++..+...++ .+.|..+|+++.... |....+ ..++..+...+ +--+|.+++.+..+. ..++ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 345555555666 588999999998873 433332 23333333333 223455555444321 1111 11
Q ss_pred --------HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHH
Q 037620 116 --------HIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEM 176 (330)
Q Consensus 116 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (330)
.....=...+...|+++.|+++-++..... +.+..+|..|..+|...|+++.|+-.++.+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 122222455677899999999999998873 556789999999999999999999998876
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.71 E-value=0.2 Score=40.78 Aligned_cols=68 Identities=18% Similarity=0.179 Sum_probs=40.9
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHH-----cCCCCcHHH
Q 037620 119 CTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRK-----CGIGPNTRT 187 (330)
Q Consensus 119 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 187 (330)
..++..+...|+++++...+..+.... +-+...+..+|.++.+.|+..+|++.|+...+ .|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 344555566666666666666665542 44555666666666666666666666665533 366666544
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.47 E-value=0.15 Score=35.39 Aligned_cols=126 Identities=8% Similarity=0.035 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCch-------HHHHHHHHHHHhCCCHHHHHHHHHHHHhCC-CCc-cHH
Q 037620 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTV-------STYEIVVRMFCYNAQVDMAMRIWDEMKARG-VLP-VMH 257 (330)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~-~~~ 257 (330)
++-.-+..+...|.++.|+-+.+.+....+..|+. .++..+..++...+++.+|...|++..+.. ..+ +..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34445666777778887777777655422233332 244566677777788888888887764321 111 111
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhcCCCCC
Q 037620 258 MYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTPL 325 (330)
Q Consensus 258 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 325 (330)
+...+. ....... ......+.+.-..+..+|.+.+++++|+.+++.++....+|.
T Consensus 102 ~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~k 156 (167)
T 3ffl_A 102 VRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPK 156 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHH
T ss_pred cccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHH
Confidence 111000 0000000 001122334444577788888888888888888776666554
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.32 E-value=1.9 Score=35.77 Aligned_cols=256 Identities=9% Similarity=0.026 Sum_probs=142.9
Q ss_pred cChHHHHHHHHHHHhC-----CCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHH----hccC
Q 037620 59 KNLLSMNEVYREMKDD-----GFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGL----GSEK 129 (330)
Q Consensus 59 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~ 129 (330)
|+++.|++.+..+.+. +..-+......++..|...++++...+.+..+....-.. ......+++.+ ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 6778888777666542 234456778889999999999999988877766432122 22233333332 2222
Q ss_pred cHHH--HHHHHHHHHh--cC-CCC---ChhhHHHHHHHHHhhCChhHHHHHHHHHHHc--CCCCc---HHHHHHHHHHHH
Q 037620 130 RLSE--ALQFFGQSKK--RG-FEP---EAPTYNAVVGAYCWSMRINDAYRMMDEMRKC--GIGPN---TRTYDIVLHHLI 196 (330)
Q Consensus 130 ~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~ 196 (330)
..+. -..+.+.... .| +.. .......|...+...|++.+|..++..+... +.... ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2221 1222221111 11 001 1123456788899999999999999998653 22111 246677788999
Q ss_pred HcCCHHHHHHHHHHhhcC---CCCCCc--hHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-CCCccHHHHH----HHHHHH
Q 037620 197 KAGRTEEAYSVFKRMSRK---PGTEPT--VSTYEIVVRMFCYNAQVDMAMRIWDEMKAR-GVLPVMHMYS----TLINSL 266 (330)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~---~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~l~~~~ 266 (330)
..+++..|..++.++... ....|+ ...+...+..+...+++.+|-+.|.++.+. ...-+...+. .++.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~ 268 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFL 268 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 999999999999986421 112222 234566777788889999998888777542 1111222221 111111
Q ss_pred hccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--CchHHHHHHHH
Q 037620 267 CHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDE--GMEETAVVLAQ 315 (330)
Q Consensus 267 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 315 (330)
.-.+....-..++........-++...+..++.+|... .+++.+.+.++
T Consensus 269 iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~ 319 (445)
T 4b4t_P 269 VLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYE 319 (445)
T ss_dssp HHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTC
T ss_pred HhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHH
Confidence 11222222223333332222234566777788877643 34555544443
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.24 E-value=0.74 Score=30.58 Aligned_cols=74 Identities=8% Similarity=0.052 Sum_probs=47.2
Q ss_pred CCCCchHHHHHHHHHHHhCCC---HHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCh
Q 037620 216 GTEPTVSTYEIVVRMFCYNAQ---VDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPG 291 (330)
Q Consensus 216 ~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 291 (330)
+-.|+..+--....++.++.+ ..+++.+++++.+.+..-....+-.+.-++.+.|+++.|.+..+.+++. .|+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N 111 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 111 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCC
Confidence 344555555555556666654 4467777777776553223445556666788888888888888888854 4543
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.14 E-value=2.8 Score=39.67 Aligned_cols=148 Identities=11% Similarity=0.055 Sum_probs=98.0
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC-----------------
Q 037620 155 AVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGT----------------- 217 (330)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------------- 217 (330)
.++..+...+.++.+.++... .+.++...-.+..++...|++++|...|.+.....+.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 445556666766666554432 2335555556778889999999999999876431100
Q ss_pred ----CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-C-cc--HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC
Q 037620 218 ----EPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGV-L-PV--MHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP 289 (330)
Q Consensus 218 ----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~-~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 289 (330)
..-..-|..++..+.+.+.++.+.++-...++... . ++ ...|..+.+.+...|++++|...+-.+-+...
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 00113467778888889999999888877765422 1 11 22578888999999999999998887765433
Q ss_pred ChhhHHHHHHHHHhcCchHH
Q 037620 290 PGQLFSNLKQALRDEGMEET 309 (330)
Q Consensus 290 ~~~~~~~l~~~~~~~g~~~~ 309 (330)
-...+..++..++..|..+.
T Consensus 970 r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHhCCChhh
Confidence 35667777777766665443
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.68 E-value=0.76 Score=28.76 Aligned_cols=63 Identities=8% Similarity=0.143 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 037620 236 QVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQ 299 (330)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 299 (330)
+.-+..+-++.+....+.|++....+.+++|.+.+++..|+++++....+- .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 344666667777777778888888888888888888888888887776532 233445665554
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.33 E-value=0.88 Score=28.46 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhC
Q 037620 28 RAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDD 74 (330)
Q Consensus 28 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (330)
+..+-++.+....+.|++....+.+++|.+.+++..|.++|+-.+.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44444444444444555555555555555555555555555544433
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.31 E-value=0.47 Score=32.93 Aligned_cols=56 Identities=9% Similarity=0.020 Sum_probs=27.2
Q ss_pred HHHHhhccChHHHHHHHHHHHhC-CCCCCh-------HHHHHHHHHHhccCcHHHHHHHHHHHH
Q 037620 52 LEGWGQQKNLLSMNEVYREMKDD-GFEPDV-------VSYGIMINAHCSAKRYDEAVELFREME 107 (330)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~ 107 (330)
+..+...+.++.|+-+.+.+... +..|+. .++..+..++...+++.+|...|++.+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 44455555555555555544332 011221 233444555556666666666666543
No 253
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.44 E-value=1.6 Score=29.04 Aligned_cols=65 Identities=12% Similarity=0.211 Sum_probs=51.3
Q ss_pred ChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 037620 60 NLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGL 125 (330)
Q Consensus 60 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (330)
|.-+..+-++.+...+..|++....+.+.+|.+.+++..|.++|+-++..- .+...+|..+++-.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqEl 132 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQEL 132 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHHH
Confidence 455677788888888888999999999999999999999999998887653 34466677776653
No 254
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.38 E-value=1.6 Score=29.00 Aligned_cols=62 Identities=8% Similarity=0.141 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 037620 237 VDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQ 299 (330)
Q Consensus 237 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 299 (330)
.-+..+-++.+...++.|++......+++|.+.+|+..|+++|+-...+- .+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 34566666777777888888888888888888888888888888776543 344555666654
No 255
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.21 E-value=1.8 Score=29.18 Aligned_cols=73 Identities=7% Similarity=0.023 Sum_probs=51.0
Q ss_pred CCCchHHHHHHHHHHHhCCC---HHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCh
Q 037620 217 TEPTVSTYEIVVRMFCYNAQ---VDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPG 291 (330)
Q Consensus 217 ~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 291 (330)
..|+..+--....++.++.+ ..+++.+++++...+..-.......+.-++.+.|++++|.++.+.+++. .|+.
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n 110 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 110 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence 35666666666777777764 4467888888877544324445556667888999999999999999875 4543
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.97 E-value=2.2 Score=32.31 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=34.4
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHc
Q 037620 124 GLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKC 179 (330)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (330)
...+.|+++++++....-++.. +.|...-..++..+|-.|+++.|..-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3455666666666666655553 445666666666666777777776666666553
No 257
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=90.35 E-value=2.1 Score=26.62 Aligned_cols=86 Identities=8% Similarity=0.014 Sum_probs=51.8
Q ss_pred cCChHHHHHHHHHHhhCCCCCChHHHHHHH--HHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHH
Q 037620 23 SRHVERAQEVFDKMKKRRFDPDIKSYTILL--EGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAV 100 (330)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 100 (330)
....++|..+-+.+...+ + .-...+| ..+...|++++|..+.+.+. .||...|.+|. -.+.|..+++.
T Consensus 19 ~H~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le 88 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLG---Q-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALD 88 (115)
T ss_dssp TTCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHH
Confidence 345677777777776643 3 2223333 44667777777777665443 56777776553 34667777777
Q ss_pred HHHHHHHhcCCCCChHHHH
Q 037620 101 ELFREMEATNCKPSPHIFC 119 (330)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~ 119 (330)
..+..+..+| .|....|.
T Consensus 89 ~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 89 RRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHHHhCC-CHHHHHHH
Confidence 7776776666 45444443
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.24 E-value=4.5 Score=33.41 Aligned_cols=61 Identities=5% Similarity=-0.159 Sum_probs=36.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 037620 82 SYGIMINAHCSAKRYDEAVELFREMEATN--CKPSPHIFCTLINGLGSEKRLSEALQFFGQSK 142 (330)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (330)
+...+...|.+.|+++.|.++|.++.... .......+-..++.+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44556666666666666666666665432 22334555566666666666666666666653
No 259
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=90.13 E-value=2.3 Score=26.56 Aligned_cols=86 Identities=9% Similarity=0.101 Sum_probs=51.2
Q ss_pred cCChHHHHHHHHHHhhCCCCCChHHHHHHH--HHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHH
Q 037620 23 SRHVERAQEVFDKMKKRRFDPDIKSYTILL--EGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAV 100 (330)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 100 (330)
....++|..+-+.+...+ + .-...|| ..+...|++++|..+.+.+. .||...|.+|. -.+.|..+++.
T Consensus 20 ~H~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le 89 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKG---E-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALE 89 (116)
T ss_dssp TTCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHH
T ss_pred chHHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHH
Confidence 345677777777776643 3 2223333 44667777777777665544 56777776553 34566666776
Q ss_pred HHHHHHHhcCCCCChHHHH
Q 037620 101 ELFREMEATNCKPSPHIFC 119 (330)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~ 119 (330)
..+..+..+| .|....|.
T Consensus 90 ~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 90 SRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHHTTCC-CHHHHHHH
T ss_pred HHHHHHHhCC-CHHHHHHH
Confidence 6666666665 45444443
No 260
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.24 E-value=3.7 Score=27.70 Aligned_cols=68 Identities=9% Similarity=-0.048 Sum_probs=35.5
Q ss_pred CCChHHHHHHHHHHhccCc---HHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 77 EPDVVSYGIMINAHCSAKR---YDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 77 ~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
.|+..+-..+.-++.+..+ ..+++.+++.+...+..........|.-++.+.|+++.|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3455544445555555443 3455666666555431123333444455666666666666666666655
No 261
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.15 E-value=3.5 Score=27.38 Aligned_cols=66 Identities=8% Similarity=-0.068 Sum_probs=31.2
Q ss_pred CChhhHHHHHHHHHhhCC---hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 148 PEAPTYNAVVGAYCWSMR---INDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
|+..+--.+..++.++.+ ...++.+++.+.+.+..-....+-.+.-++.+.|++++|....+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344444444444444433 234555555555443111223334444555566666666666666554
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.61 E-value=9.3 Score=31.53 Aligned_cols=99 Identities=6% Similarity=-0.085 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHhhCChhHHHHHHHHHHHcC--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--CCCCCchHH--H
Q 037620 151 PTYNAVVGAYCWSMRINDAYRMMDEMRKCG--IGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRK--PGTEPTVST--Y 224 (330)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~--~ 224 (330)
.+...+...|.+.|+++.|.+.+.++.... ...-...+...++.+...+++..+...+.++... .+..|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 356677788888888888888888887632 2223456677778888888888888888776531 122222211 1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHh
Q 037620 225 EIVVRMFCYNAQVDMAMRIWDEMKA 249 (330)
Q Consensus 225 ~~l~~~~~~~~~~~~a~~~~~~~~~ 249 (330)
..-...+...+++..|-..|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1111223456778887777766543
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.69 E-value=8.9 Score=30.27 Aligned_cols=139 Identities=9% Similarity=0.016 Sum_probs=71.3
Q ss_pred HhhccChHHHHHHH----HHHHhCCCCCChHHHHHHHHHHhccCcHH-HHHHHHHHHHh----cC--CCCChHHHHHHHH
Q 037620 55 WGQQKNLLSMNEVY----REMKDDGFEPDVVSYGIMINAHCSAKRYD-EAVELFREMEA----TN--CKPSPHIFCTLIN 123 (330)
Q Consensus 55 ~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~ 123 (330)
+.+.|+...+-++- +-+.+.++++|......++..+.....-+ .=.++.++++. .| ..-++.....+..
T Consensus 65 ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~ 144 (336)
T 3lpz_A 65 LLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGT 144 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Confidence 34455554444433 44445567777777777776666544311 11222222221 11 2346667777788
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHH
Q 037620 124 GLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEE 203 (330)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (330)
.|.+.+++.+|...|- .|-.++...+..++.-+...+...++ +.. ....+--|...++...
T Consensus 145 ~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlf-iaRaVL~yL~l~n~~~ 205 (336)
T 3lpz_A 145 LYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTA--------------PLY-CARAVLPYLLVANVRA 205 (336)
T ss_dssp HHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHH-HHHHHHHHHHTTCHHH
T ss_pred HHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccH--------------HHH-HHHHHHHHHHhCCHHH
Confidence 8888888888777662 23233335554444444333321111 112 2223344566778888
Q ss_pred HHHHHHHhh
Q 037620 204 AYSVFKRMS 212 (330)
Q Consensus 204 a~~~~~~~~ 212 (330)
|..+++...
T Consensus 206 A~~~~~~f~ 214 (336)
T 3lpz_A 206 ANTAYRIFT 214 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877665544
No 264
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=87.59 E-value=9.5 Score=30.49 Aligned_cols=68 Identities=16% Similarity=0.291 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC--HHHHHHHHHHHHhCCCCccH
Q 037620 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQ--VDMAMRIWDEMKARGVLPVM 256 (330)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~ 256 (330)
....++.-|...|+.++|...++++.. +... ...+...+..++-+.++ .+....++..+...|+.+..
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~-p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~ 288 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEV-PHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 288 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCC-TTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccC-Ccch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHH
Confidence 356778888899999999999999864 2222 23344555555555433 45677788888877766533
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.92 E-value=6.2 Score=29.97 Aligned_cols=54 Identities=20% Similarity=0.142 Sum_probs=27.3
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhc
Q 037620 90 HCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKR 144 (330)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (330)
..+.|+++++++....-++.. |.|...-..++..+|-.|+++.|.+-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 334455555555555444443 445555555555555555555555555544443
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.93 E-value=12 Score=29.21 Aligned_cols=85 Identities=13% Similarity=0.059 Sum_probs=41.1
Q ss_pred HhhccChHHHHHH----HHHHHhCCCCCChHHHHHHHHHHhccCcHH-HHHHHHHHHH----hcC--CCCChHHHHHHHH
Q 037620 55 WGQQKNLLSMNEV----YREMKDDGFEPDVVSYGIMINAHCSAKRYD-EAVELFREME----ATN--CKPSPHIFCTLIN 123 (330)
Q Consensus 55 ~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~ 123 (330)
+.+.|+...|-++ ++-+.+.+++++......++..+.....-+ .-.++++.++ +.+ ..-++.....+..
T Consensus 63 ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~ 142 (312)
T 2wpv_A 63 FLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGS 142 (312)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Confidence 3445555444443 344444566666666666665554422111 1122222222 111 1235566666667
Q ss_pred HHhccCcHHHHHHHHH
Q 037620 124 GLGSEKRLSEALQFFG 139 (330)
Q Consensus 124 ~~~~~~~~~~a~~~~~ 139 (330)
.|.+.|++.+|...|-
T Consensus 143 ~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 143 KLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHhhcCCHHHHHHHHH
Confidence 7777777766665553
No 267
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=84.60 E-value=15 Score=29.90 Aligned_cols=232 Identities=8% Similarity=0.008 Sum_probs=130.9
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHhhC-CCCC---ChHHHHHHHHHHhhc-cChHHHHHHHHHHHhCCCCCChHHH--
Q 037620 11 PDFNRLIDTLCKSRHVERAQEVFDKMKKR-RFDP---DIKSYTILLEGWGQQ-KNLLSMNEVYREMKDDGFEPDVVSY-- 83 (330)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~-- 83 (330)
.+...|...|.+.|+.++..+++...... +..| .......++..+... +..+.-.++..+..+..-. +..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 35667888999999999999998876542 1112 234466777777664 3344444444444432111 22233
Q ss_pred ----HHHHHHHhccCcHHHHHHHHHHHHhcCCCCC-----hHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CCCCChhh
Q 037620 84 ----GIMINAHCSAKRYDEAVELFREMEATNCKPS-----PHIFCTLINGLGSEKRLSEALQFFGQSKKR--GFEPEAPT 152 (330)
Q Consensus 84 ----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 152 (330)
..++..|...|++.+|.+++.++.+.--..| ..++..-+..|...+++.++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2578899999999999999988876321212 244556678889999999999998877543 12233333
Q ss_pred HHHH----HHHHH-hhCChhHHHHHHHHHHHc-C-CC-C---cHHHHHHHHHHHHHcCCHHHHHHHHH-HhhcCCCCCCc
Q 037620 153 YNAV----VGAYC-WSMRINDAYRMMDEMRKC-G-IG-P---NTRTYDIVLHHLIKAGRTEEAYSVFK-RMSRKPGTEPT 220 (330)
Q Consensus 153 ~~~l----~~~~~-~~~~~~~a~~~~~~~~~~-~-~~-~---~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~ 220 (330)
...+ ...+. ..+++..|...|-+.... . .. | +...|..+ +..-.++..+...++. ...... ..|.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL--~aLl~~~r~el~~~l~~~~~~~~-~~pe 255 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL--CKIMLGQSDDVNQLVSGKLAITY-SGRD 255 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HHHHTTCGGGHHHHHHSHHHHTT-CSHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH--HHHHcCCHHHHHHHhcccccccc-CCcc
Confidence 2211 23345 688999988877665421 1 10 1 11122222 2222333333333322 111111 3455
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 037620 221 VSTYEIVVRMFCYNAQVDMAMRIWDEM 247 (330)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~a~~~~~~~ 247 (330)
...+..++.++ ..+++.....+++..
T Consensus 256 i~~l~~L~~a~-~~~dl~~f~~iL~~~ 281 (394)
T 3txn_A 256 IDAMKSVAEAS-HKRSLADFQAALKEY 281 (394)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence 55566666654 556776666666554
No 268
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=84.58 E-value=13 Score=29.07 Aligned_cols=25 Identities=12% Similarity=0.304 Sum_probs=18.3
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHH
Q 037620 48 YTILLEGWGQQKNLLSMNEVYREMK 72 (330)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~ 72 (330)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3456777777888888888877764
No 269
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=83.21 E-value=17 Score=29.54 Aligned_cols=166 Identities=11% Similarity=-0.002 Sum_probs=104.0
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHhC-CCCC---ChHHHHHHHHHHhccC-cHHHHHHHHHHHHhcCCCCChHHH--
Q 037620 46 KSYTILLEGWGQQKNLLSMNEVYREMKDD-GFEP---DVVSYGIMINAHCSAK-RYDEAVELFREMEATNCKPSPHIF-- 118 (330)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~-- 118 (330)
.+...|...|.+.|+.++..+++.....- +.-| .......++..+.... ..+.-.++..+..+.. .....+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 35667888999999999999988877543 1111 2344566777776643 3344444444444321 1111222
Q ss_pred ----HHHHHHHhccCcHHHHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHhhCChhHHHHHHHHHHHc--CCCCcHHH
Q 037620 119 ----CTLINGLGSEKRLSEALQFFGQSKKRGFEPE-----APTYNAVVGAYCWSMRINDAYRMMDEMRKC--GIGPNTRT 187 (330)
Q Consensus 119 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 187 (330)
..++..|...|++.+|.+++.++.+.--..| ...+..-++.|...+++..+...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 3678999999999999999988876421212 233555677788899999999999887542 23233332
Q ss_pred HHHH----HHHHH-HcCCHHHHHHHHHHhh
Q 037620 188 YDIV----LHHLI-KAGRTEEAYSVFKRMS 212 (330)
Q Consensus 188 ~~~l----~~~~~-~~~~~~~a~~~~~~~~ 212 (330)
...+ ...+. ..+++..|...|-+..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 2211 22345 6889999988777654
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=82.82 E-value=11 Score=27.13 Aligned_cols=77 Identities=10% Similarity=0.055 Sum_probs=52.2
Q ss_pred CCCCCCchHHHHHHHHHHHh--CCCHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCC
Q 037620 214 KPGTEPTVSTYEIVVRMFCY--NAQVDMAMRIWDEMKARGVLP-VMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPP 290 (330)
Q Consensus 214 ~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 290 (330)
.....-|+.-...-+...-. .+....+..+|..|...|+-- -...|......+...|++.+|..+|+.-++.+-.|-
T Consensus 70 ~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 70 METYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 34455565543333332222 445778899999988776543 345677788888889999999999999888776663
No 271
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=80.71 E-value=11 Score=28.43 Aligned_cols=85 Identities=8% Similarity=-0.059 Sum_probs=37.8
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHH--HHHHHHHHhccC
Q 037620 193 HHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHM--YSTLINSLCHED 270 (330)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~ 270 (330)
...+..|+.+-+..+++...... ...+..-.+.+ ...+..+.......+.+.+.+.|..++... -...+...+..|
T Consensus 153 ~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 230 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDEMGADV-NACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK 230 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence 33445667666665555321100 11111112222 233445555555666677777766554321 112233344566
Q ss_pred ChhHHHHHH
Q 037620 271 KLDDACKYF 279 (330)
Q Consensus 271 ~~~~a~~~~ 279 (330)
+.+-+..++
T Consensus 231 ~~~~v~~Ll 239 (285)
T 1wdy_A 231 HLGLVQRLL 239 (285)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 654443333
No 272
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=78.80 E-value=33 Score=29.95 Aligned_cols=22 Identities=18% Similarity=0.018 Sum_probs=15.5
Q ss_pred HHHHHhcCchHHHHHHHHHHHh
Q 037620 298 KQALRDEGMEETAVVLAQKIDK 319 (330)
Q Consensus 298 ~~~~~~~g~~~~a~~~~~~~~~ 319 (330)
+..+...|....|...+..+.+
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCChhhHHHHHHHHHh
Confidence 4456777888888777776654
No 273
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=78.05 E-value=10 Score=23.70 Aligned_cols=77 Identities=13% Similarity=0.093 Sum_probs=34.1
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHH
Q 037620 165 RINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIW 244 (330)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 244 (330)
..++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+.. .-||...|.+|.. .+.|-.+++..-+
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN-----PWPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC-----CCGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 34455555554444332 1111112223444555555555544432 2355555444432 3455555555555
Q ss_pred HHHHhC
Q 037620 245 DEMKAR 250 (330)
Q Consensus 245 ~~~~~~ 250 (330)
.++...
T Consensus 92 ~~la~s 97 (115)
T 2uwj_G 92 AGLGGS 97 (115)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 444444
No 274
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=77.87 E-value=19 Score=26.77 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=13.0
Q ss_pred HHHHHccCChHHHHHHHHHHhh
Q 037620 17 IDTLCKSRHVERAQEVFDKMKK 38 (330)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~ 38 (330)
++.+....++++|.++++...+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 4555666666666666665543
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=77.76 E-value=17 Score=26.18 Aligned_cols=57 Identities=16% Similarity=0.043 Sum_probs=46.8
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCc
Q 037620 198 AGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLP 254 (330)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 254 (330)
.+...++.++|..|..+.--.--...|......+...|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 444778999999988743334456678888889999999999999999999998888
No 276
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=77.53 E-value=15 Score=25.46 Aligned_cols=76 Identities=11% Similarity=0.161 Sum_probs=51.7
Q ss_pred CCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhh
Q 037620 215 PGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLP-VMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQL 293 (330)
Q Consensus 215 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 293 (330)
....-|+.....-+...-.. +.+..+|..|...|+-- -...|......+...|++.+|.++|+.-++.+-.|....
T Consensus 57 ~~YknD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 57 KRYYSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp GGGTTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred hhhccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 34555665544444322223 34777898888876643 345577778888889999999999999988877775443
No 277
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.53 E-value=11 Score=23.65 Aligned_cols=50 Identities=8% Similarity=0.082 Sum_probs=22.2
Q ss_pred HHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 037620 194 HLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR 250 (330)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 250 (330)
.+.+.|++++|..+.+... -||...|.+|.. .+.|-.+++..-+.++...
T Consensus 49 SLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLA-----YPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHcchhHHHHHHhcCCCC-----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 3444555555555444321 345444444332 3444444444444444333
No 278
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.52 E-value=12 Score=31.50 Aligned_cols=65 Identities=12% Similarity=0.049 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHhhCCC-CCChH--H-HHHHHHHHhhccChHHHHHHHHHHHhC
Q 037620 10 LPDFNRLIDTLCKSRHVERAQEVFDKMKKRRF-DPDIK--S-YTILLEGWGQQKNLLSMNEVYREMKDD 74 (330)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~--~-~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (330)
...+|.+++.|...+.+++|..+.....--.. .++.. . +-.+...+.-.+++.+|.+.+....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45688999999999999999999988742100 11111 1 223456667788999999998888766
No 279
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=75.29 E-value=15 Score=24.25 Aligned_cols=66 Identities=17% Similarity=0.279 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCC--CHHHHHHHHHHHHhCCCCc
Q 037620 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNA--QVDMAMRIWDEMKARGVLP 254 (330)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~ 254 (330)
....++.-|...|+.++|...++++.. + ......+...+..++-+.+ ..+.+..++..+...|+-+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~-p-~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEV-P-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC-G-GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCC-C-ccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 456677777788888888888887753 1 1112233344444444443 2345666666666665553
No 280
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=74.42 E-value=30 Score=27.34 Aligned_cols=25 Identities=8% Similarity=0.121 Sum_probs=15.4
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHH
Q 037620 220 TVSTYEIVVRMFCYNAQVDMAMRIW 244 (330)
Q Consensus 220 ~~~~~~~l~~~~~~~~~~~~a~~~~ 244 (330)
++.....+...|.+.+++.+|+..|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4444456666667777766666655
No 281
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=73.85 E-value=11 Score=28.40 Aligned_cols=213 Identities=11% Similarity=0.056 Sum_probs=92.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHH--HHHHHHHHh
Q 037620 14 NRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVS--YGIMINAHC 91 (330)
Q Consensus 14 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~ 91 (330)
++.+...++.|+++....+++.-.......+...+ +.+...+..|+.+-+ +.+.+.|..++... -.+.+...+
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~-t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~ 80 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSREDIV----ELLLRHGADPVLRKKNGATPFLLAA 80 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCC-CHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCC-cHHHHHHHcCCHHHH----HHHHHcCCCCcccCCCCCCHHHHHH
Confidence 35566777888887666655432221111122122 344455566776544 44445554443211 112333444
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCCh---HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChh------------hHHHH
Q 037620 92 SAKRYDEAVELFREMEATNCKPSP---HIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAP------------TYNAV 156 (330)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------~~~~l 156 (330)
..|+.+-+ +.+.+.|..++. .-++ .+...+..|+.+-+. .+.+.|..++.. .-...
T Consensus 81 ~~~~~~~v----~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~----~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~ 151 (285)
T 1wdy_A 81 IAGSVKLL----KLFLSKGADVNECDFYGFT-AFMEAAVYGKVKALK----FLYKRGANVNLRRKTKEDQERLRKGGATA 151 (285)
T ss_dssp HHTCHHHH----HHHHHTTCCTTCBCTTCCB-HHHHHHHTTCHHHHH----HHHHTTCCTTCCCCCCHHHHHTTCCCCCH
T ss_pred HcCCHHHH----HHHHHcCCCCCccCcccCC-HHHHHHHhCCHHHHH----HHHHhCCCcccccccHHHHHhhccCCCcH
Confidence 55665443 344444433321 1122 233445566655444 344444433321 01123
Q ss_pred HHHHHhhCChhHHHHHHHHHHHcCCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHH--HHHHHHHH
Q 037620 157 VGAYCWSMRINDAYRMMDEMRKCGIGPNT---RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVST--YEIVVRMF 231 (330)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~ 231 (330)
+...+..|+.+-+..+++. .|..++. .-.+. +...+..++......+++.+.+ .+..++... -...+...
T Consensus 152 L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~-l~~a~~~~~~~~~~~i~~~Ll~-~g~~~~~~~~~g~t~L~~A 226 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNA-LIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILA 226 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCH-HHHHHHCSCTTTHHHHHHHHHH-TTCCSSCCCTTSCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCH-HHHHHHccccchHHHHHHHHHH-cCCCCCCcCCCCCcHHHHH
Confidence 3344556666554444432 1333221 11222 2333455664444455555544 344333211 11233445
Q ss_pred HhCCCHHHHHHHHH
Q 037620 232 CYNAQVDMAMRIWD 245 (330)
Q Consensus 232 ~~~~~~~~a~~~~~ 245 (330)
+..|+.+-+..+++
T Consensus 227 ~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 227 VEKKHLGLVQRLLE 240 (285)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 56677665544444
No 282
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=72.89 E-value=13 Score=25.40 Aligned_cols=66 Identities=17% Similarity=0.288 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC--HHHHHHHHHHHHhCCCCc
Q 037620 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQ--VDMAMRIWDEMKARGVLP 254 (330)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~ 254 (330)
....++.-|...|+.++|...++++.. + ......+...+..++-+.++ .+.+..++..+...++-+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~-p-~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEV-P-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC-G-GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC-C-cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 466788888899999999999998853 1 11123334445555555322 456677777777666654
No 283
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=72.45 E-value=15 Score=26.86 Aligned_cols=25 Identities=0% Similarity=0.054 Sum_probs=14.2
Q ss_pred HHHHHccCChHHHHHHHHHHhhCCC
Q 037620 17 IDTLCKSRHVERAQEVFDKMKKRRF 41 (330)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~ 41 (330)
+...+..|+.+.+..+++.+.+.+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~ 37 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGR 37 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3445556666666666665554443
No 284
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=71.94 E-value=18 Score=25.59 Aligned_cols=17 Identities=6% Similarity=0.016 Sum_probs=10.0
Q ss_pred HHHHHHHHHhcCCCCCh
Q 037620 275 ACKYFQEMLDIGIRPPG 291 (330)
Q Consensus 275 a~~~~~~~~~~~~~~~~ 291 (330)
-.++++.+++.|..++.
T Consensus 157 ~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 157 YQDIVKLLMENGADQSI 173 (201)
T ss_dssp HHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHHCCCCCCc
Confidence 35566666666655543
No 285
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=70.95 E-value=14 Score=26.13 Aligned_cols=18 Identities=11% Similarity=0.314 Sum_probs=11.0
Q ss_pred HHHHccCChHHHHHHHHH
Q 037620 18 DTLCKSRHVERAQEVFDK 35 (330)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~ 35 (330)
...+..|+.+....++..
T Consensus 10 ~~A~~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQD 27 (201)
T ss_dssp HHHHHTTCHHHHHHHHTC
T ss_pred HHHHHhccHHHHHHHHHc
Confidence 344566777777666643
No 286
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=68.16 E-value=26 Score=23.96 Aligned_cols=50 Identities=14% Similarity=0.212 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCCCc-cHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC
Q 037620 240 AMRIWDEMKARGVLP-VMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP 289 (330)
Q Consensus 240 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 289 (330)
+..+|..|...|+-. -...|......+...|++.+|..+|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 666666666654432 23345566666666777777777777666665555
No 287
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=67.22 E-value=43 Score=26.18 Aligned_cols=26 Identities=12% Similarity=-0.123 Sum_probs=16.1
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHH
Q 037620 220 TVSTYEIVVRMFCYNAQVDMAMRIWD 245 (330)
Q Consensus 220 ~~~~~~~l~~~~~~~~~~~~a~~~~~ 245 (330)
++.....+...|.+.|++.+|+..|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 44555666666667777766666553
No 288
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=65.79 E-value=29 Score=23.70 Aligned_cols=52 Identities=8% Similarity=-0.001 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCc
Q 037620 203 EAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLP 254 (330)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 254 (330)
++.++|..|..+.--.--...|..-...+...|++.+|.++|+.-++.+-.|
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3566666665532223334456666666666777777777777766666666
No 289
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=65.01 E-value=17 Score=25.20 Aligned_cols=56 Identities=13% Similarity=0.107 Sum_probs=29.4
Q ss_pred CCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhC--CCCccHHHHHHHHHHHhccCC
Q 037620 215 PGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKAR--GVLPVMHMYSTLINSLCHEDK 271 (330)
Q Consensus 215 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 271 (330)
.|.+++..= ..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-
T Consensus 27 ~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 27 GGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred cCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 455554432 34445555555666666677666655 444444444444455555554
No 290
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=63.72 E-value=43 Score=24.90 Aligned_cols=89 Identities=10% Similarity=0.021 Sum_probs=48.0
Q ss_pred HHHHHhhccChHHHHHHHHHHHhC--CCCC----ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 037620 51 LLEGWGQQKNLLSMNEVYREMKDD--GFEP----DVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLING 124 (330)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (330)
-++.+....++++|.+++++..+. +.++ +.......+..-.....-.-+..+.+++.. .+........+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 356677888899998888877643 2221 111222233333333333334444444422 3344455555667
Q ss_pred HhccCcHHHHHHHHHHHH
Q 037620 125 LGSEKRLSEALQFFGQSK 142 (330)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~ 142 (330)
+.+.|+.++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 777777777777775543
No 291
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=63.37 E-value=30 Score=22.97 Aligned_cols=57 Identities=9% Similarity=0.082 Sum_probs=32.9
Q ss_pred CCCCCchHHHHHHHHHHHhCC-CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCCh
Q 037620 215 PGTEPTVSTYEIVVRMFCYNA-QVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKL 272 (330)
Q Consensus 215 ~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 272 (330)
.|.+++..= ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 12 ~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 12 AGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp TTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred CCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 455555433 23455555555 5667777777777766555555555555666665544
No 292
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=63.29 E-value=31 Score=24.99 Aligned_cols=20 Identities=5% Similarity=-0.197 Sum_probs=9.9
Q ss_pred HHHHHhcCchHHHHHHHHHH
Q 037620 298 KQALRDEGMEETAVVLAQKI 317 (330)
Q Consensus 298 ~~~~~~~g~~~~a~~~~~~~ 317 (330)
+....+.|+.+-+..+++..
T Consensus 214 l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 214 LDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHcCcHHHHHHHHHhh
Confidence 33445556655554444433
No 293
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=63.17 E-value=32 Score=23.31 Aligned_cols=57 Identities=11% Similarity=0.081 Sum_probs=30.0
Q ss_pred CCCCCchHHHHHHHHHHHhCC-CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCCh
Q 037620 215 PGTEPTVSTYEIVVRMFCYNA-QVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKL 272 (330)
Q Consensus 215 ~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 272 (330)
.|.+++..= ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 11 ~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 11 AGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp TTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred cCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 355554432 23444444444 5556677777666665555555555455555555544
No 294
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=63.04 E-value=25 Score=23.69 Aligned_cols=56 Identities=11% Similarity=-0.019 Sum_probs=29.8
Q ss_pred CCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCCh
Q 037620 215 PGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKL 272 (330)
Q Consensus 215 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 272 (330)
.|.+++..= ..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 13 ~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 13 RGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp TTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred cCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 455555432 23344444444 556777777776665555555544445555555543
No 295
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=62.02 E-value=34 Score=23.20 Aligned_cols=44 Identities=11% Similarity=0.070 Sum_probs=19.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCC
Q 037620 228 VRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDK 271 (330)
Q Consensus 228 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 271 (330)
+..+...+..-.|.++++.+.+.+...+..|..-.+..+...|-
T Consensus 33 L~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 33 VSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 33333444444555555555544433344333333344444443
No 296
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=61.75 E-value=4.4 Score=30.42 Aligned_cols=55 Identities=4% Similarity=-0.090 Sum_probs=30.5
Q ss_pred HHHHHccCChHHHHHHHHHHhhCCCCCChH-------HHHHHHHHHh--hccChHHHHHHHHHH
Q 037620 17 IDTLCKSRHVERAQEVFDKMKKRRFDPDIK-------SYTILLEGWG--QQKNLLSMNEVYREM 71 (330)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~--~~~~~~~a~~~~~~~ 71 (330)
+...++.|+.+....+++.+.+.+..++.. -.+.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 445566788887777777666655444422 2233333322 456666666655554
No 297
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=61.55 E-value=39 Score=23.74 Aligned_cols=50 Identities=8% Similarity=-0.027 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCC
Q 037620 132 SEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIG 182 (330)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 182 (330)
+.+..++..+.+.|+-.|...-..++....+.|.+. -..+-.++...|+.
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCCC
Confidence 344555666666665544444444554444433322 23445555566654
No 298
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=61.06 E-value=62 Score=25.89 Aligned_cols=93 Identities=5% Similarity=0.103 Sum_probs=56.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCC--hhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 037620 224 YEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDK--LDDACKYFQEMLDIGIRPPGQLFSNLKQAL 301 (330)
Q Consensus 224 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 301 (330)
...++.-|...++.++|.+.++++...... ...+...+..++-+.++ .+...+++..+.+.|+-+.......+.+.+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl 298 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 298 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 577888899999999999999998643322 23344455555555433 456778888888777655544444333333
Q ss_pred HhcC----chHHHHHHHHHH
Q 037620 302 RDEG----MEETAVVLAQKI 317 (330)
Q Consensus 302 ~~~g----~~~~a~~~~~~~ 317 (330)
.... +...|..++.++
T Consensus 299 ~~ldDl~lDiP~A~~~la~~ 318 (358)
T 3eiq_C 299 NEIPDINLDVPHSYSVLERF 318 (358)
T ss_dssp HHHHHHHHHCTTHHHHHHHH
T ss_pred HhccHhhcccccHHHHHHHH
Confidence 3322 334455554444
No 299
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=60.99 E-value=17 Score=20.56 Aligned_cols=50 Identities=20% Similarity=0.231 Sum_probs=31.9
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchH
Q 037620 258 MYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEE 308 (330)
Q Consensus 258 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 308 (330)
.++.++..++...-.++++..+.++++.| ..+...|..-++.+.+..-..
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaReQF~~ 53 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQQFLV 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH
Confidence 35566666666666777777777777766 456666666666666544433
No 300
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=59.30 E-value=61 Score=25.26 Aligned_cols=67 Identities=16% Similarity=0.310 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC--HHHHHHHHHHHHhCCCCcc
Q 037620 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQ--VDMAMRIWDEMKARGVLPV 255 (330)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~ 255 (330)
....++.-|...|+.++|...++++.. +... ...+...+..+.-+.++ .+....++..+.+.|+-+.
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~-p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEV-PHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCC-GGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCC-Ccch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 345677888888999999999998854 1111 22334455555555433 4566777888877776643
No 301
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=58.94 E-value=51 Score=24.19 Aligned_cols=51 Identities=10% Similarity=0.017 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCC
Q 037620 131 LSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIG 182 (330)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 182 (330)
.+.+..++..+.+.|+-.|..--..++....+.+.+ ....+-.++...|+.
T Consensus 92 ~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~ 142 (221)
T 3d5l_A 92 EEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIG 142 (221)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCC
Confidence 345556666677777665554444555544432222 344455666667764
No 302
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=58.42 E-value=42 Score=23.12 Aligned_cols=70 Identities=13% Similarity=0.166 Sum_probs=49.1
Q ss_pred HHHHHHHH-HHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhc--CCCCChhhHHHHHHHHHhcCchH
Q 037620 238 DMAMRIWD-EMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDI--GIRPPGQLFSNLKQALRDEGMEE 308 (330)
Q Consensus 238 ~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 308 (330)
+.+.+-+. .+.+.|.+++.. -..++..+...++.-.|.++++.+.+. +...+..|...-+..+...|-..
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 44444443 345678886553 556667777777888999999999877 66677777777777888777543
No 303
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=58.36 E-value=41 Score=22.95 Aligned_cols=61 Identities=15% Similarity=0.234 Sum_probs=33.4
Q ss_pred hHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHhhc
Q 037620 152 TYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGR--TEEAYSVFKRMSR 213 (330)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~ 213 (330)
....++.-|...|+.++|...++++...... ...+...+..++-+.++ .+.+..++..+..
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~ 73 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWK 73 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 3566788888888888888888887431111 12233333333333222 3345555555554
No 304
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=58.26 E-value=39 Score=22.70 Aligned_cols=43 Identities=5% Similarity=-0.012 Sum_probs=19.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccC
Q 037620 228 VRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHED 270 (330)
Q Consensus 228 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 270 (330)
+..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 28 l~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 28 LEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3333344444455555555555444334444333344444444
No 305
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=58.10 E-value=52 Score=24.01 Aligned_cols=50 Identities=18% Similarity=0.188 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhcCCCCCCchH-H-----HHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 037620 201 TEEAYSVFKRMSRKPGTEPTVS-T-----YEIVVRMFCYNAQVDMAMRIWDEMKAR 250 (330)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~-~-----~~~l~~~~~~~~~~~~a~~~~~~~~~~ 250 (330)
.+.|+.+|+.+.+......... . -...+-.|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 5667777777766332221110 0 112334566777777777777776654
No 306
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=57.81 E-value=8.9 Score=28.69 Aligned_cols=26 Identities=4% Similarity=-0.189 Sum_probs=15.3
Q ss_pred HHHHHhcCchHHHHHHHHHHHhcCCC
Q 037620 298 KQALRDEGMEETAVVLAQKIDKLRKT 323 (330)
Q Consensus 298 ~~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (330)
+....+.|+.+-+..++++-.....+
T Consensus 229 L~~A~~~g~~~~v~~Ll~~g~~~~~~ 254 (260)
T 3jxi_A 229 LMMAAKTGKIGIFQHIIRREIADAAA 254 (260)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHcCCHHHHHHHHHhCCCcccc
Confidence 33445677777777777765544443
No 307
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=56.48 E-value=63 Score=24.51 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=12.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHhh
Q 037620 191 VLHHLIKAGRTEEAYSVFKRMS 212 (330)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~ 212 (330)
.+...+..|+.+-+..+++.-.
T Consensus 164 ~L~~A~~~g~~~~v~~Ll~~ga 185 (285)
T 3kea_A 164 CIHITIKNGHVDMMILLLDYMT 185 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHcCC
Confidence 3444456666666666665533
No 308
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=55.50 E-value=36 Score=22.91 Aligned_cols=61 Identities=11% Similarity=0.159 Sum_probs=32.8
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCH
Q 037620 174 DEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQV 237 (330)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (330)
+.+.+.|++++..= ..++..+...+ .-.|.++++.+.+ .+...+..|...-+..+...|-+
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~-~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRK-TASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHT-TCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHh-hCCCCCHhHHHHHHHHHHHCCcE
Confidence 34555677665532 33444445555 5677777777765 33344555544444555555543
No 309
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=55.12 E-value=29 Score=23.16 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=29.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCCh
Q 037620 226 IVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKL 272 (330)
Q Consensus 226 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 272 (330)
.++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 45555556666667777777777766555655555555666666544
No 310
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=54.04 E-value=63 Score=23.76 Aligned_cols=74 Identities=14% Similarity=0.209 Sum_probs=48.4
Q ss_pred cCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCC
Q 037620 213 RKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLP-VMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP 289 (330)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 289 (330)
......-|......-+. |+.. .+.+..+|..|...|+-- -...|......+...|++.+|..+|+.-++.+-.|
T Consensus 109 ~~~rYknD~RyLklWl~-Ya~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 109 RNPLYKDDVRYLRIWMQ-YVNY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp TCGGGTTCHHHHHHHHH-HHTT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred ccccccCCHHHHHHHHH-HHHc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 33345556554443333 3332 346778888888776543 34457777778888899999999998888777666
No 311
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=53.93 E-value=1e+02 Score=28.66 Aligned_cols=50 Identities=14% Similarity=0.026 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcC
Q 037620 256 MHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPG----QLFSNLKQALRDEG 305 (330)
Q Consensus 256 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 305 (330)
..-|..++..+-+.+-++.+..+.+..++.--..|. ..|..++++.+..|
T Consensus 897 ~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 897 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 346788889999999999999998888864322232 35667777666544
No 312
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=53.86 E-value=1.4e+02 Score=27.75 Aligned_cols=88 Identities=11% Similarity=-0.005 Sum_probs=50.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCC------------------
Q 037620 227 VVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIR------------------ 288 (330)
Q Consensus 227 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------------ 288 (330)
++..+...|.++-|.++..-. +.++..-..+.++|...|++++|..+|+++.. |+.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 445555566655444322111 11222223455566666777777766665431 111
Q ss_pred --C---ChhhHHHHHHHHHhcCchHHHHHHHHHHHhc
Q 037620 289 --P---PGQLFSNLKQALRDEGMEETAVVLAQKIDKL 320 (330)
Q Consensus 289 --~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (330)
+ ...-|..++..+.+.+-++.+.++.+.....
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 0 1236788899999999999999888877753
No 313
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=53.61 E-value=98 Score=25.86 Aligned_cols=141 Identities=9% Similarity=-0.025 Sum_probs=92.8
Q ss_pred cCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHH
Q 037620 23 SRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVEL 102 (330)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 102 (330)
..+.+-|.++-. +.|++--...|..-...+...|++++|.++-....+ |+-.+..|.+.+-..=...|+..-.+.+
T Consensus 342 l~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 342 LQNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp TCCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred cCCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 466777766543 346666667787788889999999999988877654 3555788877776666667777778888
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHH
Q 037620 103 FREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEM 176 (330)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (330)
|..+.+.| ..+..----+++.-...|+.+-..+++.+= .+..+...-..+ +..+..-|+.+|.+.
T Consensus 418 F~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e~---KL~~SEeLGDlv-----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 418 FGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKED---KLECSEELGDLV-----KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHT---CSCCCHHHHHHH-----HHHCSHHHHHHHHHH
T ss_pred HHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhcC---CccccHHhHhhh-----hhcCHHHHHHHHHHc
Confidence 88888887 566655555667777777777666665542 223333322221 344556666666554
No 314
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=53.19 E-value=54 Score=22.74 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCcc
Q 037620 202 EEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPV 255 (330)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 255 (330)
+.+..+|..|..+.--.--...|..-...+...|++.+|.++|+.-++.+..|.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 446677777776433344556778888888999999999999999999888883
No 315
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=52.99 E-value=54 Score=22.66 Aligned_cols=51 Identities=6% Similarity=0.005 Sum_probs=22.7
Q ss_pred hCCCHHHHHHHHHHHHhCCCCc--cHHHHHHHHH-H-----HhccCChhHHHHHHHHHH
Q 037620 233 YNAQVDMAMRIWDEMKARGVLP--VMHMYSTLIN-S-----LCHEDKLDDACKYFQEML 283 (330)
Q Consensus 233 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~ 283 (330)
+.|++-+|-++++..=.....+ ....|..||+ . ..+.|+...|..++.+..
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3355555555555543332222 3334444444 1 123455555555554443
No 316
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=52.92 E-value=25 Score=19.46 Aligned_cols=29 Identities=28% Similarity=0.179 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 037620 273 DDACKYFQEMLDIGIRPPGQLFSNLKQAL 301 (330)
Q Consensus 273 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 301 (330)
++|...|.+|+...-.++.-+|...++.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 56777777776543345556666666665
No 317
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=52.25 E-value=67 Score=23.60 Aligned_cols=53 Identities=15% Similarity=0.173 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCc
Q 037620 202 EEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLP 254 (330)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 254 (330)
+.+..+|..|..+.--.--...|......+...|++.+|..+|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 56777888887743334455677888888889999999999999988888887
No 318
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=51.59 E-value=19 Score=23.38 Aligned_cols=52 Identities=15% Similarity=0.148 Sum_probs=29.9
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHH
Q 037620 48 YTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVEL 102 (330)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 102 (330)
|.-.|...+..++.+-|.++++-..+.| +..+|.+++-.|...=+++-++++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 3344555556666666666666666554 555566666666555555555443
No 319
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=50.40 E-value=42 Score=25.52 Aligned_cols=145 Identities=6% Similarity=-0.083 Sum_probs=65.8
Q ss_pred HHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHH--HHHHHHHHhccC
Q 037620 17 IDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVS--YGIMINAHCSAK 94 (330)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~ 94 (330)
+...+..|+.+-+..+++. |..++...-.+.+...+..|+.+-+..++ +.|..++... -.+.+...+..|
T Consensus 35 L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~ga~~~~~d~~g~t~L~~A~~~g 106 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNA----GALKNLLENEFPLHQAATLEDTKIVKILL----FSGLDDSQFDDKGNTALYYAVDSG 106 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCcHHHHHHHcC
Confidence 4455566776655554443 33333221233444556667765444444 4444433211 112333444566
Q ss_pred cHHHHHHHHHHHHhcCCCCCh---HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhhCChhHHH
Q 037620 95 RYDEAVELFREMEATNCKPSP---HIFCTLINGLGSEKRLSEALQFFGQSKKRGFEP-EAPTYNAVVGAYCWSMRINDAY 170 (330)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~ 170 (330)
+.+-+.-+++. |..++. .-+.+.+...+..|+.+-+. .+.+.|..+ +...-...+...+..|+.+-+.
T Consensus 107 ~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~ 178 (285)
T 3kea_A 107 NMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIVS----YFLSEIPSTFDLAILLSCIHITIKNGHVDMMI 178 (285)
T ss_dssp CHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHHH----HHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHHH----HHHhCCCccccccCCccHHHHHHHcChHHHHH
Confidence 66554444433 322221 11123344455566655443 334444332 2213334445556677777666
Q ss_pred HHHHHHH
Q 037620 171 RMMDEMR 177 (330)
Q Consensus 171 ~~~~~~~ 177 (330)
-+++.-.
T Consensus 179 ~Ll~~ga 185 (285)
T 3kea_A 179 LLLDYMT 185 (285)
T ss_dssp HHHHHHH
T ss_pred HHHHcCC
Confidence 6655433
No 320
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=49.08 E-value=34 Score=22.49 Aligned_cols=45 Identities=13% Similarity=0.148 Sum_probs=24.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCC
Q 037620 227 VVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDK 271 (330)
Q Consensus 227 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 271 (330)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 444444455556666666666665544455554444555555443
No 321
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=48.34 E-value=39 Score=19.76 Aligned_cols=59 Identities=15% Similarity=0.248 Sum_probs=30.7
Q ss_pred HHhCCCCccHHHHHHHHHHHhccC-ChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCc
Q 037620 247 MKARGVLPVMHMYSTLINSLCHED-KLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGM 306 (330)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 306 (330)
+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 445555544432 33444444443 445566666666555544555555555565555553
No 322
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=48.20 E-value=59 Score=21.79 Aligned_cols=58 Identities=9% Similarity=0.040 Sum_probs=26.8
Q ss_pred HhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC
Q 037620 36 MKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAK 94 (330)
Q Consensus 36 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 94 (330)
+.+.|+.++.. -..++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 33444444332 22333333344445556666666655544444444444444444444
No 323
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=48.10 E-value=30 Score=23.08 Aligned_cols=46 Identities=11% Similarity=0.085 Sum_probs=23.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC
Q 037620 190 IVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQ 236 (330)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (330)
.++..+...+..-.|.++++.+.+ .+...+..|....+..+...|-
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~-~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKH-KGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHH-hCCCCCHHHHHHHHHHHHHCCC
Confidence 344455555555666667666655 2334444444444444555444
No 324
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=46.97 E-value=60 Score=21.46 Aligned_cols=58 Identities=12% Similarity=0.228 Sum_probs=27.5
Q ss_pred HhhCCCCCChHHHHHHHHHHhhcc-ChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC
Q 037620 36 MKKRRFDPDIKSYTILLEGWGQQK-NLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAK 94 (330)
Q Consensus 36 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 94 (330)
+.+.|+.++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 33445444432 223334444444 45566666666666554445544444444444444
No 325
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.88 E-value=1.3e+02 Score=25.49 Aligned_cols=65 Identities=6% Similarity=0.108 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchH--H-HHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 037620 186 RTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVS--T-YEIVVRMFCYNAQVDMAMRIWDEMKAR 250 (330)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~-~~~l~~~~~~~~~~~~a~~~~~~~~~~ 250 (330)
..++.+++.|...+.++.|..+..+..-.....++.. . +..+...+.-.+++.+|.+.+......
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5667777777778888888888877643111112211 1 223345556677777777777776554
No 326
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=46.83 E-value=64 Score=21.80 Aligned_cols=58 Identities=21% Similarity=0.234 Sum_probs=29.0
Q ss_pred HhhCCCCCChHHHHHHHHHHhhcc-ChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC
Q 037620 36 MKKRRFDPDIKSYTILLEGWGQQK-NLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAK 94 (330)
Q Consensus 36 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 94 (330)
+.+.|+.++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 8 l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 8 LKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 44445544432 223334444444 45566666666666554455555444455555544
No 327
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=46.73 E-value=79 Score=22.77 Aligned_cols=37 Identities=5% Similarity=0.074 Sum_probs=19.5
Q ss_pred hccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccC
Q 037620 57 QQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAK 94 (330)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 94 (330)
+..+.+.|+-++.+|++.| .|.-..-..++.+.-..|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 3456666666666666666 444444344444443333
No 328
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=46.55 E-value=60 Score=21.33 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=12.5
Q ss_pred HHHHHHHHhhCChhHHHHHHHHH
Q 037620 154 NAVVGAYCWSMRINDAYRMMDEM 176 (330)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~ 176 (330)
..++.-|...|+.++|...++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 34455555555555555555554
No 329
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=46.06 E-value=75 Score=22.36 Aligned_cols=26 Identities=15% Similarity=0.063 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh
Q 037620 186 RTYDIVLHHLIKAGRTEEAYSVFKRM 211 (330)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (330)
..++.+...+...|+.++|+..+..-
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 44555566666777777777766654
No 330
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=45.63 E-value=51 Score=23.74 Aligned_cols=20 Identities=20% Similarity=0.100 Sum_probs=12.7
Q ss_pred HHHHHccCChHHHHHHHHHH
Q 037620 17 IDTLCKSRHVERAQEVFDKM 36 (330)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~ 36 (330)
+...+..|+++....+++.-
T Consensus 10 l~~A~~~g~~~~v~~ll~~~ 29 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILAD 29 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHHhc
Confidence 45556677777777666553
No 331
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=45.53 E-value=82 Score=22.62 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=8.6
Q ss_pred HHHccCChHHHHHHHH
Q 037620 19 TLCKSRHVERAQEVFD 34 (330)
Q Consensus 19 ~~~~~~~~~~a~~~~~ 34 (330)
..++.|+++....+++
T Consensus 15 ~A~~~g~~~~~~~Ll~ 30 (240)
T 3eu9_A 15 KATQYGIYERCRELVE 30 (240)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHH
Confidence 3455666655544443
No 332
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=44.41 E-value=1.7e+02 Score=25.88 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=26.1
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHh
Q 037620 12 DFNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWG 56 (330)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 56 (330)
.| .+|-.|.++|++++|.++.+..... +.--...+...+..|+
T Consensus 155 ~W-a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~ 197 (661)
T 2qx5_A 155 IW-ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYA 197 (661)
T ss_dssp HH-HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC-
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHH
Confidence 45 4667888999999999998876542 1111134555555555
No 333
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=43.79 E-value=1.2e+02 Score=23.99 Aligned_cols=64 Identities=8% Similarity=0.016 Sum_probs=37.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhc-cChHHHHHHHHHHHhCCCC
Q 037620 13 FNRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQ-KNLLSMNEVYREMKDDGFE 77 (330)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~ 77 (330)
...++.-|...|+.++|...++++...... .......+..+.-+. ...+.+..++..+.+.++-
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 567888899999999999999888531110 112222233333221 1234566677777766544
No 334
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=42.54 E-value=38 Score=19.95 Aligned_cols=32 Identities=3% Similarity=0.095 Sum_probs=22.2
Q ss_pred CCCCChhhHHHHHHHHHccCChHHHHHHHHHH
Q 037620 5 GLKQELPDFNRLIDTLCKSRHVERAQEVFDKM 36 (330)
Q Consensus 5 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 36 (330)
+++|++.+|+-+...+-+..-..++..+.+.+
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 67888888888877766665556666665554
No 335
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=42.30 E-value=58 Score=21.33 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=25.2
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC
Q 037620 156 VVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGR 200 (330)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (330)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 344444445556666666666665555555555555555555543
No 336
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=40.12 E-value=1.6e+02 Score=24.41 Aligned_cols=56 Identities=14% Similarity=0.048 Sum_probs=34.1
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCC-----hhHHHHHHHHHHHcCCC
Q 037620 127 SEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMR-----INDAYRMMDEMRKCGIG 182 (330)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 182 (330)
+.++.+.|+.++.+|.+.|..|....-..+..+.-.-|. ...|...++....-|.+
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~p 327 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPA 327 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCc
Confidence 456788888888888888766655555555555544443 22345555555555543
No 337
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=40.06 E-value=1.3e+02 Score=23.32 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=30.6
Q ss_pred HHHHHHHHccCChHHHHHHHHHHhhCCCCCChH----HHHHHHHHHhhccChHHHHHHHHHHHhCCCCC
Q 037620 14 NRLIDTLCKSRHVERAQEVFDKMKKRRFDPDIK----SYTILLEGWGQQKNLLSMNEVYREMKDDGFEP 78 (330)
Q Consensus 14 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 78 (330)
++.+...++.|+++-+..+++. |..++.. -++. +...+..|+.+- .+.+++.|..+
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~----Gadvn~~~~~~g~Tp-Lh~A~~~g~~~i----v~~Ll~~ga~~ 85 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEG----GANVNFQEEEGGWTP-LHNAVQMSREDI----VELLLRHGADP 85 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH----TCCTTCCCTTTCCCH-HHHHHHTTCHHH----HHHHHHTTCCT
T ss_pred ChHHHHHHHcCCHHHHHHHHHC----CCCCCccCCCCCcCH-HHHHHHcCCHHH----HHHHHHcCCch
Confidence 4556667788998877666653 4444321 1233 344456677654 34444555443
No 338
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=39.11 E-value=39 Score=23.66 Aligned_cols=53 Identities=19% Similarity=0.217 Sum_probs=30.2
Q ss_pred cHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchH
Q 037620 255 VMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEE 308 (330)
Q Consensus 255 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 308 (330)
....++.++..++...-.++++..+.++...| ..+..+|..-++.+.+..-+.
T Consensus 110 ~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaReQF~~ 162 (174)
T 2p22_A 110 KTDGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELARQQFLV 162 (174)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH
Confidence 33445666666666555666666666666655 355556655555555544433
No 339
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=38.79 E-value=69 Score=19.86 Aligned_cols=57 Identities=9% Similarity=0.144 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHH-----hcCCCCChhhHHHH
Q 037620 239 MAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEML-----DIGIRPPGQLFSNL 297 (330)
Q Consensus 239 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~l 297 (330)
.|.++.+++...|+.|+..+...++..|...+- + +..+..+.. ..|..|+..+++.+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 466677777777888887777777776665553 1 333333322 23666666655543
No 340
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=37.76 E-value=99 Score=21.35 Aligned_cols=49 Identities=14% Similarity=0.073 Sum_probs=25.0
Q ss_pred cChHHHHHHHHHHHhCCCCC--ChHHHHHHHH-H-----HhccCcHHHHHHHHHHHH
Q 037620 59 KNLLSMNEVYREMKDDGFEP--DVVSYGIMIN-A-----HCSAKRYDEAVELFREME 107 (330)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~-~-----~~~~~~~~~a~~~~~~~~ 107 (330)
|++-+|.++|+..-.....+ ....|..||. . ..+.|+...|..++.+..
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 66666666666665543333 3344444444 1 223455555555555544
No 341
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=37.74 E-value=73 Score=22.07 Aligned_cols=26 Identities=8% Similarity=0.244 Sum_probs=18.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHhh
Q 037620 13 FNRLIDTLCKSRHVERAQEVFDKMKK 38 (330)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~ 38 (330)
...++.-|...++.++|...++++..
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~ 38 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNL 38 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 45567777777888888888877653
No 342
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=37.12 E-value=1.1e+02 Score=21.61 Aligned_cols=60 Identities=17% Similarity=0.218 Sum_probs=32.7
Q ss_pred hHHHHHHH-HHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCC
Q 037620 12 DFNRLIDT-LCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFE 77 (330)
Q Consensus 12 ~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 77 (330)
.|..|+.. +.-.|.+..++-++...- ..+..-|..| +|-+..++..|+..++.+....+.
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~lN----T~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd 94 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHKLN----TCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVE 94 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHTCC----BHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSB
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHhcc----hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccc
Confidence 34444432 234566666665543221 1122223332 456778999999999998865443
No 343
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=37.00 E-value=1.1e+02 Score=21.84 Aligned_cols=50 Identities=12% Similarity=-0.011 Sum_probs=23.7
Q ss_pred HHHHHccCChHHHHHHHHHHhhCCCCC---ChHHHHHHHHHHhhccChHHHHHHHHH
Q 037620 17 IDTLCKSRHVERAQEVFDKMKKRRFDP---DIKSYTILLEGWGQQKNLLSMNEVYRE 70 (330)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~ 70 (330)
+...++.|+.+.+..+++.- |..+ |...++ .+...+..|+.+-+..+++.
T Consensus 7 L~~A~~~g~~~~v~~Ll~~~---g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKFE---GCEVHQRGAMGET-ALHIAALYDNLEAAMVLMEA 59 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTTT---CSCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhc---CCCcccCCCCCCC-HHHHHHHcCCHHHHHHHHHc
Confidence 44556667766655555431 2222 222222 23334456666655555544
No 344
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=36.93 E-value=45 Score=21.69 Aligned_cols=49 Identities=14% Similarity=0.022 Sum_probs=24.7
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHH
Q 037620 85 IMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQ 136 (330)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 136 (330)
-.|...+..++.+-|.++++-+.+.| +...|.+.+-.|...=+++.+++
T Consensus 37 DAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 37 DAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp HHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 34444455555555555555555444 34445555555555544544443
No 345
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=36.70 E-value=1.6e+02 Score=23.56 Aligned_cols=73 Identities=14% Similarity=0.127 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHhCCCCCC---hHHHHHHHHHHhccCc--HHHHHHHHHHHHhcCCCCChHHHHHH
Q 037620 47 SYTILLEGWGQQKNLLSMNEVYREMKDDGFEPD---VVSYGIMINAHCSAKR--YDEAVELFREMEATNCKPSPHIFCTL 121 (330)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (330)
....++.-|...|+.++|.+.++++. .|+ ......++......++ .+.+-.++..+...++-+.......+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~----~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf 89 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMR----APKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAF 89 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT----CCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC----CchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 34567778888888888888888875 233 1222233333333332 24455666666665544444444433
Q ss_pred HH
Q 037620 122 IN 123 (330)
Q Consensus 122 ~~ 123 (330)
..
T Consensus 90 ~~ 91 (364)
T 3l6a_A 90 LN 91 (364)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 346
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=36.45 E-value=1.6e+02 Score=23.29 Aligned_cols=25 Identities=8% Similarity=0.191 Sum_probs=19.4
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHH
Q 037620 48 YTILLEGWGQQKNLLSMNEVYREMK 72 (330)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~ 72 (330)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4567777888888888888887775
No 347
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=35.97 E-value=57 Score=21.61 Aligned_cols=12 Identities=8% Similarity=0.282 Sum_probs=4.6
Q ss_pred ccCChHHHHHHH
Q 037620 22 KSRHVERAQEVF 33 (330)
Q Consensus 22 ~~~~~~~a~~~~ 33 (330)
..|+.+.+..++
T Consensus 11 ~~g~~~~v~~ll 22 (156)
T 1bd8_A 11 ARGDVQEVRRLL 22 (156)
T ss_dssp HHTCHHHHHHHH
T ss_pred HhCCHHHHHHHH
Confidence 333433333333
No 348
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=35.84 E-value=1.1e+02 Score=21.35 Aligned_cols=93 Identities=11% Similarity=0.032 Sum_probs=43.0
Q ss_pred HHHccCChHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHH---HHHHHHHHh-ccC
Q 037620 19 TLCKSRHVERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVS---YGIMINAHC-SAK 94 (330)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~-~~~ 94 (330)
..++.|+++....+++.-.. ..+...-.+.+...+..|+.+.-.++.+.+++.|..++... ++.|..++. ...
T Consensus 12 ~Aa~~g~~~~~~~l~~~~~~---~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~ 88 (186)
T 3t8k_A 12 AAAMLGTYEDFLELFEKGYE---DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGN 88 (186)
T ss_dssp HHHHHSCHHHHHHHHHHSSS---CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTT
T ss_pred HHHHcCCHHHHHHHHhcCcc---cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCc
Confidence 34566777776655543211 01101112344445556666655666677777766555321 111221111 122
Q ss_pred cHHHHHHHHHHHHhcCCCCC
Q 037620 95 RYDEAVELFREMEATNCKPS 114 (330)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~ 114 (330)
+.....++.+.+.+.|..++
T Consensus 89 ~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 89 DITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp CHHHHHHHHHHHHHTTCCSS
T ss_pred chhhHHHHHHHHHHCCCCCC
Confidence 33344555566666554443
No 349
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=35.78 E-value=1.3e+02 Score=21.95 Aligned_cols=54 Identities=9% Similarity=0.043 Sum_probs=29.2
Q ss_pred hccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCc-----HHHHHHHHHHHHhcC
Q 037620 57 QQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKR-----YDEAVELFREMEATN 110 (330)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~ 110 (330)
+..+.+.|+-++.+|++.|-.|.-..-..++.+.-..|. ...|...++.....|
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 105 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVG 105 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhC
Confidence 446777777777777777655544444444444444432 233444444444445
No 350
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=34.82 E-value=51 Score=21.85 Aligned_cols=143 Identities=8% Similarity=0.003 Sum_probs=64.6
Q ss_pred HHHHHhhccChHHHHHHHHHHHhCCC-CCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCC---hHHHHHHHHHHh
Q 037620 51 LLEGWGQQKNLLSMNEVYREMKDDGF-EPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPS---PHIFCTLINGLG 126 (330)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 126 (330)
.+...+..|+.+.+..+++. ....+ ..+..-. +.+.. +..|+.+-+..++ +.|..++ ..-.+ .+...+
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~-t~L~~-~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t-~L~~A~ 76 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGK-TALQV-MMFGSTAIALELL----KQGASPNVQDTSGTS-PVHDAA 76 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSC-CHHHH-SCTTCHHHHHHHH----HTTCCTTCCCTTSCC-HHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCC-cHHHH-HHcCCHHHHHHHH----HCCCCCCCcCCCCCC-HHHHHH
Confidence 34445677888888777776 21111 1122222 23344 6667766544444 3343322 22222 233444
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHH
Q 037620 127 SEKRLSEALQFFGQSKKRGFEPE---APTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEE 203 (330)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (330)
..|+.+-+..++ +.|..++ ....+. +...+..|+.+-+..+++. ..... .+..-.+ .+...+..|+.+-
T Consensus 77 ~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~-~~~~~-~~~~g~t-~l~~A~~~~~~~~ 148 (156)
T 1bd8_A 77 RTGFLDTLKVLV----EHGADVNVPDGTGALP-IHLAVQEGHTAVVSFLAAE-SDLHR-RDARGLT-PLELALQRGAQDL 148 (156)
T ss_dssp HTTCHHHHHHHH----HTTCCSCCCCTTSCCH-HHHHHHHTCHHHHHHHHTT-SCTTC-CCTTSCC-HHHHHHHSCCHHH
T ss_pred HcCcHHHHHHHH----HcCCCCCCcCCCCCcH-HHHHHHhChHHHHHHHHhc-cCCCC-cCCCCCC-HHHHHHHcCcHHH
Confidence 567665444333 4443332 222233 3344556776666555544 11111 1111112 2334456677766
Q ss_pred HHHHHH
Q 037620 204 AYSVFK 209 (330)
Q Consensus 204 a~~~~~ 209 (330)
+.-+++
T Consensus 149 v~~Ll~ 154 (156)
T 1bd8_A 149 VDILQG 154 (156)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 655544
No 351
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=34.15 E-value=49 Score=24.76 Aligned_cols=57 Identities=9% Similarity=0.019 Sum_probs=33.6
Q ss_pred HHHHHHHccCChHHHHHHHHHHhhCCCCC-------ChHHHHHHHHHHh--hccChHHHHHHHHHH
Q 037620 15 RLIDTLCKSRHVERAQEVFDKMKKRRFDP-------DIKSYTILLEGWG--QQKNLLSMNEVYREM 71 (330)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~l~~~~~--~~~~~~~a~~~~~~~ 71 (330)
+.+...++.|+.+.+..+++...+.+... +..-++.|..++. +.|+.+-+..+++..
T Consensus 15 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 15 RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp HHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 34445567888888888888766544322 2333444544443 347776666666654
No 352
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=33.83 E-value=2.4e+02 Score=27.44 Aligned_cols=50 Identities=12% Similarity=0.153 Sum_probs=28.5
Q ss_pred hccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHh
Q 037620 267 CHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 319 (330)
Q Consensus 267 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (330)
...+++-.|++++.++.+.. |+...|..++..+...| |+....+.+++.-
T Consensus 1295 ~~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~~l~-w~h~~~~~~~~~~ 1344 (1354)
T 3lxu_X 1295 YAHGHYGRMYKYVVKLIEEK--RTRDHFVELAAINGALG-HEHIRTVINRMMI 1344 (1354)
T ss_dssp HHHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHcC-CHHHHHHHHhhhh
Confidence 35667777777777776542 56666666666655544 3333444444433
No 353
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=33.60 E-value=2.1e+02 Score=23.96 Aligned_cols=142 Identities=14% Similarity=0.084 Sum_probs=93.6
Q ss_pred hCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHH
Q 037620 163 SMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMR 242 (330)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 242 (330)
..+.+-|.++. .+.|++--...|..-...+...|++++|-.+--.... |.--+..|.+.+-..=...|+..-.+.
T Consensus 342 l~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~--giLRt~~Ti~rFk~vp~~pgq~splL~ 416 (494)
T 1bpo_A 342 LQNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK--GILRTPDTIRRFQSVPAQPGQTSPLLQ 416 (494)
T ss_dssp TCCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG--GSSCSHHHHHHHTTSCCCTTSCCHHHH
T ss_pred cCCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc--ccccCHHHHHHHhcCCCCCCCCCHHHH
Confidence 46666665544 4566666677788888899999999999998887765 555577777666655556677778888
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 037620 243 IWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKID 318 (330)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (330)
+|..+.+.|-. +..-=-.+++.-...|+.+-..+++.+ ..+..+...=. ++ +..+..-|..++.+..
T Consensus 417 YF~~Ll~~g~L-n~~ESlEl~r~vL~q~r~~llekWl~e---~KL~~SEeLGD-lv----k~~d~~LAl~IY~~a~ 483 (494)
T 1bpo_A 417 YFGILLDQGQL-NKYESLELCRPVLQQGRKQLLEKWLKE---DKLECSEELGD-LV----KSVDPTLALSVYLRAN 483 (494)
T ss_dssp HHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHH---TCSCCCHHHHH-HH----HHHCSHHHHHHHHHHC
T ss_pred HHHHHhccCcc-chHHhhHHhHHHHhccHHHHHHHHHhc---CCccccHHhHh-hh----hhcCHHHHHHHHHHcC
Confidence 88888887654 444334456666677776655555543 23444443322 22 3446677777776654
No 354
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=33.50 E-value=1.1e+02 Score=20.62 Aligned_cols=61 Identities=16% Similarity=0.118 Sum_probs=33.8
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCH
Q 037620 140 QSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRT 201 (330)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (330)
.+.+.|+.++.. -..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-.
T Consensus 17 ~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 344555544332 3344455555556667777777777665555666665566666665543
No 355
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=33.41 E-value=1.3e+02 Score=21.56 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=11.1
Q ss_pred cCcHHHHHHHHHHHHhcCCCCC
Q 037620 128 EKRLSEALQFFGQSKKRGFEPE 149 (330)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~ 149 (330)
..+.+.|+-++.+|++.|-.|.
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~ 41 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPL 41 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 3455555555555555554333
No 356
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=32.52 E-value=83 Score=21.78 Aligned_cols=63 Identities=11% Similarity=0.222 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC--HHHHHHHHHHHHhCCCC
Q 037620 187 TYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQ--VDMAMRIWDEMKARGVL 253 (330)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 253 (330)
....++.-|...++.++|...++++.. +...| .....++......++ .+.+-.++..+.. ++-
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~-p~~~~--~~V~~~I~~aldrk~~ere~~s~LL~~L~~-~~l 76 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNL-GEMKS--GVPVLAVSLALEGKASHREMTSKLLSDLCG-TVM 76 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC-SGGGG--HHHHHHHHHHHTSCHHHHHHHHHHHHHHBT-TTB
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCC-cccHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-CCC
Confidence 456778888899999999999999864 22222 222334443333333 2344556666533 444
No 357
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=32.38 E-value=1.4e+02 Score=21.47 Aligned_cols=34 Identities=15% Similarity=0.064 Sum_probs=18.2
Q ss_pred hccChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 037620 57 QQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAH 90 (330)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (330)
+..+.+.|+-++.+|++.|-.|.-..-..++.+.
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3456666666666666666444433333333333
No 358
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=32.20 E-value=37 Score=18.70 Aligned_cols=23 Identities=9% Similarity=0.034 Sum_probs=12.5
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCc
Q 037620 198 AGRTEEAYSVFKRMSRKPGTEPT 220 (330)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~ 220 (330)
.-+++.|...|..+.....++|+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHH
Confidence 34566666666665543444444
No 359
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=32.12 E-value=62 Score=24.17 Aligned_cols=18 Identities=11% Similarity=0.076 Sum_probs=9.9
Q ss_pred HHHHhcCchHHHHHHHHH
Q 037620 299 QALRDEGMEETAVVLAQK 316 (330)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~ 316 (330)
....+.|+.+-+..+++.
T Consensus 238 ~~A~~~g~~~iv~~Ll~~ 255 (273)
T 2pnn_A 238 ALAASSGKIGVLAYILQR 255 (273)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHC
Confidence 344566776655555543
No 360
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=31.27 E-value=93 Score=19.11 Aligned_cols=64 Identities=9% Similarity=0.068 Sum_probs=38.7
Q ss_pred HHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHH
Q 037620 31 EVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAV 100 (330)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 100 (330)
.+++.+.+.|+- +..-...+-. .......++|.++++.+..+| ...|..++.++...|+..-|.
T Consensus 25 ~vld~L~~~~vl-t~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 25 QLWDVLLSRELF-RPHMIEDIQR-AGSGSRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp TTHHHHHHTTSS-CHHHHHHHHT-STTCCHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHh-ccCCChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHH
Confidence 466777776643 3333333222 101246788888998888764 356777888887767665553
No 361
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=30.93 E-value=1.7e+02 Score=23.69 Aligned_cols=51 Identities=8% Similarity=0.084 Sum_probs=26.6
Q ss_pred HHHHHHHccCChHHHHHHHHHHhhCCCCCChHH--HHHHHHHHhhccChHHHHHHHH
Q 037620 15 RLIDTLCKSRHVERAQEVFDKMKKRRFDPDIKS--YTILLEGWGQQKNLLSMNEVYR 69 (330)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~ 69 (330)
+.+...+..|+.+-+..+++ .|..|+... ..+.+...+..|+.+-+..+++
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 68 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQ----RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ 68 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHH----TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 44556667787766555554 344443221 1233444556677665555444
No 362
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=30.73 E-value=1.5e+02 Score=21.28 Aligned_cols=15 Identities=0% Similarity=-0.057 Sum_probs=6.8
Q ss_pred HHcCCHHHHHHHHHH
Q 037620 196 IKAGRTEEAYSVFKR 210 (330)
Q Consensus 196 ~~~~~~~~a~~~~~~ 210 (330)
+..|+.+-+..+++.
T Consensus 87 ~~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 87 CEHRSPTCLRALLDS 101 (241)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHc
Confidence 344454444444443
No 363
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=30.69 E-value=83 Score=21.04 Aligned_cols=18 Identities=17% Similarity=0.230 Sum_probs=9.3
Q ss_pred HHHHHccCChHHHHHHHH
Q 037620 17 IDTLCKSRHVERAQEVFD 34 (330)
Q Consensus 17 i~~~~~~~~~~~a~~~~~ 34 (330)
+...++.|+.+....+++
T Consensus 12 l~~A~~~g~~~~v~~ll~ 29 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCT 29 (165)
T ss_dssp HHHHHHHTCHHHHHHHCC
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 334455566655555443
No 364
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=29.25 E-value=82 Score=17.81 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=9.5
Q ss_pred HHHHhccCcHHHHHHHHHHHHhcC
Q 037620 87 INAHCSAKRYDEAVELFREMEATN 110 (330)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~ 110 (330)
+..++...-.++++-.+.+..+.|
T Consensus 9 l~l~Aed~AieDaiy~L~~aL~~g 32 (65)
T 2f6m_A 9 YNLVAQDYALTDTIEALSRMLHRG 32 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333333333344444444444433
No 365
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=29.04 E-value=69 Score=17.23 Aligned_cols=11 Identities=27% Similarity=0.271 Sum_probs=5.2
Q ss_pred hHHHHHHHHHH
Q 037620 307 EETAVVLAQKI 317 (330)
Q Consensus 307 ~~~a~~~~~~~ 317 (330)
++.|.+++.+|
T Consensus 38 le~AmewL~k~ 48 (54)
T 2cos_A 38 IEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44444444444
No 366
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=28.86 E-value=4.2e+02 Score=25.90 Aligned_cols=78 Identities=13% Similarity=0.138 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHhCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHHHH
Q 037620 61 LLSMNEVYREMKDDGFEP-DVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQFFG 139 (330)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 139 (330)
.+...+.|.++.+. +.+ |.......+.-..+.+++-.|++++.++.+.. |+...|..++..+...| |+-...+.+
T Consensus 1265 ~~~~~~~~~el~k~-~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~~l~-w~h~~~~~~ 1340 (1354)
T 3lxu_X 1265 LAEINELYTEIIKF-VDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEK--RTRDHFVELAAINGALG-HEHIRTVIN 1340 (1354)
T ss_dssp HHHHHHHHHHHTTS-SCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHS-CHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-cccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHcC-CHHHHHHHH
Confidence 45556677777665 222 22222222223335778888888888888764 67778877777776555 333444444
Q ss_pred HHH
Q 037620 140 QSK 142 (330)
Q Consensus 140 ~~~ 142 (330)
++.
T Consensus 1341 ~~~ 1343 (1354)
T 3lxu_X 1341 RMM 1343 (1354)
T ss_dssp HHH
T ss_pred hhh
Confidence 443
No 367
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=28.66 E-value=2.5e+02 Score=23.24 Aligned_cols=52 Identities=12% Similarity=0.058 Sum_probs=32.6
Q ss_pred hhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC-----HHHHHHHHHHhhc
Q 037620 162 WSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGR-----TEEAYSVFKRMSR 213 (330)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~ 213 (330)
+.++.+.|+.++.+|.+.|..|....-..+..+.-..|. ...|...++....
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~ 323 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTR 323 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHH
Confidence 357899999999999998876655444445555544443 2334455554444
No 368
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=27.50 E-value=1e+02 Score=18.87 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHH
Q 037620 11 PDFNRLIDTLCKSRHVERAQEVFDKM 36 (330)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~ 36 (330)
..+......+.+.|++++|++.....
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 34556667777888888887765543
No 369
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=27.24 E-value=1.8e+02 Score=21.14 Aligned_cols=33 Identities=12% Similarity=0.161 Sum_probs=16.7
Q ss_pred cCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 037620 128 EKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAY 160 (330)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (330)
..+.+.|+-++.+|++.|-.|....-..++.+.
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~As 80 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISAC 80 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 455666666666666665444433333333333
No 370
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=26.75 E-value=83 Score=17.31 Aligned_cols=13 Identities=23% Similarity=0.253 Sum_probs=5.0
Q ss_pred CChhHHHHHHHHH
Q 037620 270 DKLDDACKYFQEM 282 (330)
Q Consensus 270 ~~~~~a~~~~~~~ 282 (330)
|+.+.|+..+-.|
T Consensus 37 gdvd~aI~~LL~m 49 (59)
T 1wgl_A 37 GNKDAAINSLLQM 49 (59)
T ss_dssp TCHHHHHHHHHHS
T ss_pred CCHHHHHHHHHcC
Confidence 3333333333333
No 371
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=26.38 E-value=1.8e+02 Score=20.93 Aligned_cols=17 Identities=12% Similarity=0.231 Sum_probs=8.4
Q ss_pred CcHHHHHHHHHHHHhcC
Q 037620 94 KRYDEAVELFREMEATN 110 (330)
Q Consensus 94 ~~~~~a~~~~~~~~~~~ 110 (330)
.+.+.|+-++-+|++.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 44445555555555444
No 372
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=26.13 E-value=4e+02 Score=24.69 Aligned_cols=77 Identities=9% Similarity=0.089 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhC----CCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhccCcHHHHHHH
Q 037620 62 LSMNEVYREMKDD----GFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSEKRLSEALQF 137 (330)
Q Consensus 62 ~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 137 (330)
+.|.+.|+..... .++||... .+...-.+.|..++-..+++...... +..--..++.+++-..+.....++
T Consensus 706 ~~a~~~f~~~~~~~~~~~i~~dlr~--~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll~aL~~~~d~~~l~~~ 780 (909)
T 4fke_A 706 NLAKTLFDQWMSDPENNPIHPNLRS--TIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLRSALACSNEVWLLNRY 780 (909)
T ss_dssp HHHHHHHHHHHTCTTSCCSCTTTHH--HHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCcCCHHHHH--HHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHHHHhCCCCCHHHHHHH
Confidence 4555566555432 13344332 22222334444444444444444332 223334455666666666666666
Q ss_pred HHHHHh
Q 037620 138 FGQSKK 143 (330)
Q Consensus 138 ~~~~~~ 143 (330)
++....
T Consensus 781 L~~~l~ 786 (909)
T 4fke_A 781 LGYTLN 786 (909)
T ss_dssp HHHTTC
T ss_pred HHHHhC
Confidence 665544
No 373
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=26.05 E-value=1.8e+02 Score=20.77 Aligned_cols=17 Identities=6% Similarity=0.057 Sum_probs=8.2
Q ss_pred HhcCchHHHHHHHHHHH
Q 037620 302 RDEGMEETAVVLAQKID 318 (330)
Q Consensus 302 ~~~g~~~~a~~~~~~~~ 318 (330)
...|+...+.++.+.++
T Consensus 218 ~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 218 SLNSQVWSALQMSKALQ 234 (237)
T ss_dssp CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34445555555554444
No 374
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=25.70 E-value=90 Score=22.45 Aligned_cols=45 Identities=9% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCch
Q 037620 261 TLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGME 307 (330)
Q Consensus 261 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 307 (330)
..+..|.+.|.+++|.+++++.... .++..-...-+....+.++.
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f~~--~~~~~~lr~kL~~II~~Kd~ 166 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIFGD--PNSHMPFKSKLLMIISQKDT 166 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC-------CCTTHHHHHHHHHTTCT
T ss_pred HHHHHHHHccchHHHHHHHHHHhcC--CCCchHHHHHHHHHHHccCC
No 375
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=25.13 E-value=3.6e+02 Score=23.86 Aligned_cols=28 Identities=11% Similarity=0.003 Sum_probs=18.7
Q ss_pred hhhHHHHHHH-----HHhcCchHHHHHHHHHHH
Q 037620 291 GQLFSNLKQA-----LRDEGMEETAVVLAQKID 318 (330)
Q Consensus 291 ~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~ 318 (330)
..|+..|++. +.+.|+++.|.+.++++.
T Consensus 533 ~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~ 565 (661)
T 2qx5_A 533 KEICMLLLNISSIRELYFNKQWQETLSQMELLD 565 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 4455555442 367899999988777653
No 376
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=24.82 E-value=1.4e+02 Score=19.09 Aligned_cols=77 Identities=13% Similarity=0.200 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHh-CCCCccHHHHHHHHHHHhccCChhHHHHH
Q 037620 200 RTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKA-RGVLPVMHMYSTLINSLCHEDKLDDACKY 278 (330)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 278 (330)
.+.+|+.-+++.... ++|......+++.+.. -++.|+++.+...+ .|+ .+.++...++...+.|-.+.. +.
T Consensus 3 ~~~~al~~L~e~~~~---~~~~~~~dg~i~~fe~--t~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~ 74 (119)
T 1wty_A 3 SLARAVERLKAALER---PKDEFIRDSAIQRFEF--TFELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PF 74 (119)
T ss_dssp CHHHHHHHHHHHHSS---CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HH
T ss_pred HHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HH
Confidence 567788888877652 4566566666665443 35566777666554 355 355677777777777766555 55
Q ss_pred HHHHHh
Q 037620 279 FQEMLD 284 (330)
Q Consensus 279 ~~~~~~ 284 (330)
|..|..
T Consensus 75 w~~m~~ 80 (119)
T 1wty_A 75 WLEMLE 80 (119)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 377
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=24.82 E-value=2.8e+02 Score=22.42 Aligned_cols=65 Identities=11% Similarity=0.102 Sum_probs=40.9
Q ss_pred ChhhHHHHHHHHHccCC--hHHHHHHHHHHhhCCCCCChHHHHHHHHHHhhccChHHHHHHHHHHHhC
Q 037620 9 ELPDFNRLIDTLCKSRH--VERAQEVFDKMKKRRFDPDIKSYTILLEGWGQQKNLLSMNEVYREMKDD 74 (330)
Q Consensus 9 ~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (330)
+..+|-.+|..+....+ .++|..+++.+.+ |-.++...=..|+....+....++..-+.+-|.+.
T Consensus 22 ~~~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~-G~~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~ 88 (377)
T 3r88_A 22 SVPSWPQILGRLTDNRDLARGQAAWAMDQIMT-GNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSH 88 (377)
T ss_dssp --CCHHHHHHHHHTTCCCCTTHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHh
Confidence 44578888888776665 4678888888887 33344444444555555555667766666666654
No 378
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=24.47 E-value=1.1e+02 Score=21.79 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=11.9
Q ss_pred HHHHHccCChHHHHHHHHHH
Q 037620 17 IDTLCKSRHVERAQEVFDKM 36 (330)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~ 36 (330)
+...++.|+.+.+..+++.-
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~ 25 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSK 25 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHhcC
Confidence 44455667766666666543
No 379
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=23.80 E-value=2.7e+02 Score=21.93 Aligned_cols=29 Identities=17% Similarity=0.020 Sum_probs=19.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcC
Q 037620 117 IFCTLINGLGSEKRLSEALQFFGQSKKRG 145 (330)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (330)
+....+....+.+++..|..+-+++.+.+
T Consensus 209 aLr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 209 ALQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 33445566677777777777777777664
No 380
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=23.76 E-value=2.9e+02 Score=22.30 Aligned_cols=233 Identities=13% Similarity=0.138 Sum_probs=107.5
Q ss_pred HHHHHHhhccChHHHHHHHHHHHhCCCCCChHH--HHHHHHHHhccCcHHHHHHHHHHHHhcCCCCC---hHHHHHHHHH
Q 037620 50 ILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVS--YGIMINAHCSAKRYDEAVELFREMEATNCKPS---PHIFCTLING 124 (330)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 124 (330)
+.+...+..|+.+-+..++ +.|..|+... ..+.+...+..|+.+-+.-+++ .+..++ ..-. +.+..
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~-t~L~~ 86 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLL----QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQ-TPLHC 86 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHH----HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTSC-CHHHH
T ss_pred CHHHHHHHCCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCC-CHHHH
Confidence 3455556778776555544 4555554321 1234555666777665555444 332222 1112 23445
Q ss_pred HhccCcHHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHHc
Q 037620 125 LGSEKRLSEALQFFGQSKKRGFEPEA---PTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPN---TRTYDIVLHHLIKA 198 (330)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 198 (330)
.+..|+.+-+.-+++ .|..++. ...+ .+...+..|+.+.+..+++ .+..++ ..-. ..+...+..
T Consensus 87 A~~~g~~~~v~~Ll~----~ga~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~-t~L~~A~~~ 156 (437)
T 1n11_A 87 AARIGHTNMVKLLLE----NNANPNLATTAGHT-PLHIAAREGHVETVLALLE----KEASQACMTKKGF-TPLHVAAKY 156 (437)
T ss_dssp HHHHTCHHHHHHHHH----HTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSC-CHHHHHHHT
T ss_pred HHHCCCHHHHHHHHh----CCCCCCCCCCCCCc-HHHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCC-CHHHHHHHc
Confidence 556677665444443 4443332 2222 3344556677766555544 332221 1111 234445677
Q ss_pred CCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHH---HHHHHHHHHhccCChhHH
Q 037620 199 GRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMH---MYSTLINSLCHEDKLDDA 275 (330)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a 275 (330)
|+.+-+..+++.-.. ... .+..-. ..+...+..|+.+ +++.+.+.|..++.. .++.+ ...+..|+.+-
T Consensus 157 g~~~~v~~Ll~~g~~-~~~-~~~~g~-t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~- 227 (437)
T 1n11_A 157 GKVRVAELLLERDAH-PNA-AGKNGL-TPLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPL-HIAAKQNQVEV- 227 (437)
T ss_dssp TCHHHHHHHHHTTCC-TTC-CCSSCC-CHHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHH-HHHHHTTCHHH-
T ss_pred CCHHHHHHHHhCCCC-CCC-CCCCCC-CHHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHH-HHHHHcCCHHH-
Confidence 888776666654221 111 111111 1233445667765 444445555444322 12223 33455666544
Q ss_pred HHHHHHHHhcCCCCChh---hHHHHHHHHHhcCchHHHHHHH
Q 037620 276 CKYFQEMLDIGIRPPGQ---LFSNLKQALRDEGMEETAVVLA 314 (330)
Q Consensus 276 ~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~ 314 (330)
++.+.+.|..++.. -.+ .+......|..+-+..++
T Consensus 228 ---~~~Ll~~g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll 265 (437)
T 1n11_A 228 ---ARSLLQYGGSANAESVQGVT-PLHLAAQEGHAEMVALLL 265 (437)
T ss_dssp ---HHHHHHTTCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHH
T ss_pred ---HHHHHHcCCCCCCCCCCCCC-HHHHHHHCCCHHHHHHHH
Confidence 34444555444322 222 233445667765544443
No 381
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=23.71 E-value=1.8e+02 Score=24.19 Aligned_cols=27 Identities=7% Similarity=0.130 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 037620 187 TYDIVLHHLIKAGRTEEAYSVFKRMSR 213 (330)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (330)
..+.+...|.+.++...+..+++.+..
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~ 204 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQP 204 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence 455666777777777777777777765
No 382
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.51 E-value=1.6e+02 Score=19.09 Aligned_cols=42 Identities=10% Similarity=0.123 Sum_probs=20.6
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHh
Q 037620 67 VYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEA 108 (330)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 108 (330)
+|+.+....+.|+...--.-+..+...++++.|.++...+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444443333322333344456666666666665554
No 383
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=23.38 E-value=88 Score=22.98 Aligned_cols=27 Identities=4% Similarity=-0.036 Sum_probs=16.1
Q ss_pred HHHHHHccCChHHHHHHHHHHhhCCCC
Q 037620 16 LIDTLCKSRHVERAQEVFDKMKKRRFD 42 (330)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~ 42 (330)
.+...+..|+.+.+..+++.+.+.|..
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~ 31 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKY 31 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 344556667777666666666554443
No 384
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=23.36 E-value=2.7e+02 Score=21.76 Aligned_cols=221 Identities=8% Similarity=-0.053 Sum_probs=0.0
Q ss_pred HHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhcc
Q 037620 49 TILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGSE 128 (330)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (330)
.+.+...+..|+.+-+..+++. ...+......-.+.+...+..|+. ++.+.+.+.+..++...-...+...+..
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~g~t~L~~A~~~ 94 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIET--GVSPTIQNRFGCTALHLACKFGCV----DTAKYLASVGEVHSLWHGQKPIHLAVMA 94 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHCCH----HHHHHHHHHCCCCCCBTTBCHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCcHHHHHHHcCCH----HHHHHHHHCCCCccccCCCCHHHHHHHc
Q ss_pred CcHHHHHHHHHHHHhcCCCCCh--------------------hhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHH
Q 037620 129 KRLSEALQFFGQSKKRGFEPEA--------------------PTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTY 188 (330)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 188 (330)
|+.+-+..+++.....|..++. .-.+.|..+........+..+++-+. ...+......-
T Consensus 95 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~-ga~~~~~d~~g 173 (364)
T 3ljn_A 95 NKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL-GASPTAKDKAD 173 (364)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH-TCCTTCCCTTS
T ss_pred CCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc-CCCCcccCCCC
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhc-----CCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 037620 189 DIVLHHLIKAGRTEEAYSVFKRMSR-----KPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLI 263 (330)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 263 (330)
...+...+..|+.+-+..+++.... ......+..| .+...+..|+.+-+.-+++.-...+.. |..-.+.|.
T Consensus 174 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t---~L~~A~~~g~~~~v~~Ll~~gad~~~~-d~~g~tpL~ 249 (364)
T 3ljn_A 174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNS---HLHWAILINWEDVAMRFVEMGIDVNME-DNEHTVPLY 249 (364)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCC---TTHHHHTTTCHHHHHHHHTTTCCTTCC-CTTSCCHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCc---HHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHH
Q ss_pred HHHhccCChhHHHHHHHH
Q 037620 264 NSLCHEDKLDDACKYFQE 281 (330)
Q Consensus 264 ~~~~~~~~~~~a~~~~~~ 281 (330)
.+... |+.+-+.-+++.
T Consensus 250 ~A~~~-g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 250 LSVRA-AMVLLTKELLQK 266 (364)
T ss_dssp HHHHT-CCHHHHHHHHHH
T ss_pred HHHHh-ChHHHHHHHHHc
No 385
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=23.00 E-value=1.3e+02 Score=22.07 Aligned_cols=28 Identities=4% Similarity=-0.179 Sum_probs=16.4
Q ss_pred HHHHhhccChHHHHHHHHHHHhCCCCCC
Q 037620 52 LEGWGQQKNLLSMNEVYREMKDDGFEPD 79 (330)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 79 (330)
+...+..|+.+.+..+++.+.+.|..++
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~ 33 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLT 33 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcc
Confidence 3445566777766666666665554433
No 386
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=22.99 E-value=1.7e+02 Score=24.32 Aligned_cols=60 Identities=12% Similarity=0.208 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCccHH--------HHH-HHHHHHhccCChhHHHHHHHHH
Q 037620 223 TYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMH--------MYS-TLINSLCHEDKLDDACKYFQEM 282 (330)
Q Consensus 223 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~-~l~~~~~~~~~~~~a~~~~~~~ 282 (330)
..+.+...|.+.++...|..+++.+...+..|+.. +|. .+.+.+...+++.+|.+.+..+
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A 246 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEA 246 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHH
Confidence 34667777888888888888887777665533322 222 2334445566666666655544
No 387
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=22.91 E-value=2.3e+02 Score=20.79 Aligned_cols=18 Identities=6% Similarity=0.296 Sum_probs=9.1
Q ss_pred ChHHHHHHHHHHhhCCCC
Q 037620 25 HVERAQEVFDKMKKRRFD 42 (330)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~ 42 (330)
+|.+-.++++.+...+..
T Consensus 34 dFrq~rdi~eall~~~l~ 51 (235)
T 3bu8_A 34 DFRQIRDIMQALLVRPLG 51 (235)
T ss_dssp HHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHhCccc
Confidence 444555555555544433
No 388
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=22.44 E-value=2.7e+02 Score=21.44 Aligned_cols=42 Identities=5% Similarity=-0.049 Sum_probs=20.0
Q ss_pred HhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 037620 161 CWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEEAYSVFK 209 (330)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 209 (330)
++.|+.+ +.+.+.+.|..++..+ .+...++.|+.+-+.-+++
T Consensus 281 ~~~g~~~----iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~iv~~Ll~ 322 (337)
T 4g8k_A 281 VELKLKK----IAELLCKRGASTDCGD---LVMTARRNYDHSLVKVLLS 322 (337)
T ss_dssp HHTTCHH----HHHHHHTTSCSSTTCC---HHHHHHHTTCHHHHHHHHH
T ss_pred HHcCCHH----HHHHHHHCCCCCCCCC---HHHHHHHcCCHHHHHHHHH
Confidence 3445543 3334455565555433 3334455666654444443
No 389
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=21.93 E-value=2.1e+02 Score=19.92 Aligned_cols=170 Identities=10% Similarity=-0.040 Sum_probs=81.2
Q ss_pred ChHHHHHHHHHHhhccChHHHHHHHHHHHhCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 037620 44 DIKSYTILLEGWGQQKNLLSMNEVYREMKDDGFEPDVVSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLIN 123 (330)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (330)
+...-...+..+...+.......+. .+.. .++...-...+.++...+..+ +...+..+.. .++..+-...+.
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 98 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLI-KALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAV 98 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHH-HHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 4444444444444444433222222 3322 234444444555555555433 3333333332 345555556666
Q ss_pred HHhccCcHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhhCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCHHH
Q 037620 124 GLGSEKRLSEALQFFGQSKKRGFEPEAPTYNAVVGAYCWSMRINDAYRMMDEMRKCGIGPNTRTYDIVLHHLIKAGRTEE 203 (330)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (330)
++.+.++.+. ...+..+.. .++..+-...+.++.+.++.+ +...+..+.. .++..+-...+.++...|..+
T Consensus 99 aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~~- 169 (201)
T 3ltj_A 99 ALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGER- 169 (201)
T ss_dssp HHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSHH-
T ss_pred HHHHhCcHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCchh-
Confidence 6666665433 333333332 345556666666666666543 3333333333 245666666677777776644
Q ss_pred HHHHHHHhhcCCCCCCchHHHHHHHHHHHhC
Q 037620 204 AYSVFKRMSRKPGTEPTVSTYEIVVRMFCYN 234 (330)
Q Consensus 204 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (330)
+...+..+..+ ++...-...+.++.+.
T Consensus 170 ~~~~L~~~l~d----~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 170 VRAAMEKLAET----GTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHHHHHH----CCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC----CCHHHHHHHHHHHHHH
Confidence 44444444431 3444444444444443
No 390
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=21.60 E-value=2e+02 Score=20.16 Aligned_cols=46 Identities=11% Similarity=0.062 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhc
Q 037620 81 VSYGIMINAHCSAKRYDEAVELFREMEATNCKPSPHIFCTLINGLGS 127 (330)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (330)
..++-++.+++...-.+.++-.+.+....| ..+..+|-.-.+.+++
T Consensus 112 ~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaR 157 (174)
T 2p22_A 112 DGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELAR 157 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 344555555555555566666666665555 3444455444444443
No 391
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=20.90 E-value=72 Score=22.81 Aligned_cols=19 Identities=5% Similarity=0.132 Sum_probs=10.3
Q ss_pred HHHhhccChHHHHHHHHHH
Q 037620 53 EGWGQQKNLLSMNEVYREM 71 (330)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~ 71 (330)
...+..|+.+.+..+++.-
T Consensus 7 ~~A~~~g~~~~v~~Ll~~~ 25 (228)
T 2dzn_A 7 HQACMENEFFKVQELLHSK 25 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 3345566666655555543
No 392
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=20.49 E-value=2.4e+02 Score=20.07 Aligned_cols=20 Identities=10% Similarity=0.129 Sum_probs=13.0
Q ss_pred HHHHHHccCChHHHHHHHHH
Q 037620 16 LIDTLCKSRHVERAQEVFDK 35 (330)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~ 35 (330)
.+...+..|+.+-+..+++.
T Consensus 40 ~L~~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 40 ALHIAALYDNLEAAMVLMEA 59 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHc
Confidence 45555667887777666665
Done!