BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037622
(560 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 315 bits (808), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 202/541 (37%), Positives = 297/541 (54%), Gaps = 16/541 (2%)
Query: 22 ETGIYHSKHPSVNLPANDSLLDVDSFIFSH--KHNGRTALVDSLSGYSISYPQLFPLVQS 79
E I+ SK P + +P N L + S++ + H+ + L++ +G +Y + +
Sbjct: 5 EEFIFRSKLPDIYIPKN---LPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARR 61
Query: 80 VASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLC 139
VASGL + GI QGD ++L LP+S F + FL + GAI+ NP + +E+ K
Sbjct: 62 VASGL-NKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKAS 120
Query: 140 KTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVI 199
+ K+ + Y +K++ + V V V+ +G F +L + + I
Sbjct: 121 RAKLLITQACY--YEKVKDFARESDVKV--MCVDSAPDGCLH-FSELTQADENEAPQVDI 175
Query: 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFH 259
D A+ YSSGTTG KG LTH I +V V + Y SE V L VLPMFH
Sbjct: 176 SPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNL-YFHSEDVILCVLPMFH 234
Query: 260 IYXXXXXXXXXXXXXXXXXXMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCG 319
IY M +FE +L +I+KY V+ PVVPP++M++ K+ L
Sbjct: 235 IYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD-LDK 293
Query: 320 NSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAV--GTRGFNTKKFS-K 376
+ L SL+ + SG AP ++ + FP QGYGMTE+ V F + F K
Sbjct: 294 HDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIK 353
Query: 377 YFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWL 436
+ G + N + K+VD G LP GE+ +RG MK Y+N+ +AT TIDKEGWL
Sbjct: 354 PGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWL 413
Query: 437 HTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLG 496
HTGDI Y D+D L+IVDRLKE+IKY G+Q++PA+LE +LI HPEI D AV G D+ G
Sbjct: 414 HTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAG 473
Query: 497 EIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFL 556
E+PVAFVV+ + S TE + Y++++V YK+++RV F ++IPK+ +GK+LR+ L++ L
Sbjct: 474 EVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKL 533
Query: 557 T 557
Sbjct: 534 A 534
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 315 bits (806), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 205/545 (37%), Positives = 307/545 (56%), Gaps = 16/545 (2%)
Query: 25 IYHSKHPSVNLPANDSLLDVDSFIFSH--KHNGRTALVDSLSGYSISYPQLFPLVQSVAS 82
I+ SK P + +P + SL D +IF + + + L++ +G+ +Y + + + +A+
Sbjct: 47 IFRSKLPDIYIPNHLSLHD---YIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAA 103
Query: 83 GLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTK 142
H G++Q D V+LLLPN F + FLA + GA NP + +EI KQ TK
Sbjct: 104 NF-HKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTK 162
Query: 143 ISLAFTIY-ENVDKLRSWGTTPVVAVPENLVNDFKEG--RFSDFHKLIAGKFDLVERPVI 199
+ + Y + + L++ +V + +N EG RF++ + ++++ I
Sbjct: 163 LIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVEI 222
Query: 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFH 259
D A+ YSSGTTG KG LTH + +V V E Y S+ V L VLPMFH
Sbjct: 223 SPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNL-YFHSDDVILCVLPMFH 281
Query: 260 IYXXXXXXXXXXXXXXXXXXMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCG 319
IY M +FE + +L++I + VT P+VPPI++A+ K+++
Sbjct: 282 IYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETE-K 340
Query: 320 NSLKSLKQVSSGAAPANSKIIEDFVGA-FPHVDFIQGYGMTESTAV--GTRGFNTKKFS- 375
L S++ V SGAAP K +ED V A FP+ QGYGMTE+ V + GF + F
Sbjct: 341 YDLSSIRVVKSGAAPL-GKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPV 399
Query: 376 KYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGW 435
K + G + N + K+VD G L GE+ +RG MK Y+NN AT TIDK+GW
Sbjct: 400 KSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGW 459
Query: 436 LHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVL 495
LHTGDI D+D L+IVDRLKE+IKY G+Q++PA+LE +LI HP+I DVAV ++
Sbjct: 460 LHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAA 519
Query: 496 GEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKF 555
GE+PVAFVV+ S L+E V +++++V YK++ +V FT+SIPK+ +GK+LR++LR
Sbjct: 520 GEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAK 579
Query: 556 LTSKL 560
L + L
Sbjct: 580 LANGL 584
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 235 bits (599), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 165/520 (31%), Positives = 263/520 (50%), Gaps = 35/520 (6%)
Query: 55 GRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALL 114
G A D+ + +I+Y + F + +A ++ +G+ + + NS+ F + L
Sbjct: 72 GTIAFTDAHAEVNITYSEYFEMACRLAETMKR-YGLGLQHHIAVCSENSLQFFMPVCGAL 130
Query: 115 YLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLV-- 172
++G V P N + + E+ +++ ++ ++ F + K+ G + + + +V
Sbjct: 131 FIGVGVAPTNDIYNERELYNSLSI--SQPTIVFCSKRALQKI--LGVQKKLPIIQKIVIL 186
Query: 173 ---NDF--KEGRFSDFHK-LIAG--KFDLVERPVIRQQDTAAILYSSGTTGASKGAELTH 224
D+ K+ +S L AG ++D + R+ TA I+ SSG+TG KG ELTH
Sbjct: 187 DSREDYMGKQSMYSFIESHLPAGFNEYDYIPDSFDRETATALIMNSSGSTGLPKGVELTH 246
Query: 225 GNFIAAVELFVRFEASQYEYLSSEAV----FLAVLPMFHIYXXXXXXXXXXXXXXXXXXM 280
N + VRF + ++ + L V+P FH M
Sbjct: 247 KN------ICVRFSHCRDPVFGNQIIPDTAILTVIP-FHHGFGMFTTLGYLTCGFRIVLM 299
Query: 281 RRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKII 340
RFE L+ + Y + +VP + K+ + L +L +++SG AP ++
Sbjct: 300 YRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL-VDKYDLSNLHEIASGGAPLAKEVG 358
Query: 341 EDFVGAFPHVDFIQGYGMTESTA---VGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNG 397
E F QGYG+TE+T+ + RG + K + G + P AK+VD G
Sbjct: 359 EAVAKRFKLPGIRQGYGLTETTSAIIITPRGRDDKPGA----CGKVVPFFSAKIVDLDTG 414
Query: 398 CFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLK 457
L GEL ++GP MK Y+NN +AT + IDK+GWLH+GDIAY+D+DGY +IVDRLK
Sbjct: 415 KTLGVNQRGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIAYYDKDGYFFIVDRLK 474
Query: 458 EVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVI 517
+IKY GYQ+ PA+LE++L+ HP I D V G D GE+P A VV +G T+TE V+
Sbjct: 475 SLIKYKGYQVPPAELESILLQHPFIFDAGVAGIPDPDAGELPAAVVVLEEGKTMTEQEVM 534
Query: 518 DYLAQRVAPYKKVR-RVVFTKSIPKSAAGKVLRRELRKFL 556
DY+A +V K++R V F +PK GK+ R++R+ L
Sbjct: 535 DYVAGQVTASKRLRGGVKFVDEVPKGLTGKIDARKIREIL 574
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 229 bits (585), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 160/517 (30%), Positives = 256/517 (49%), Gaps = 30/517 (5%)
Query: 55 GRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALL 114
G A D+ +I+Y + F + +A ++ +G++ +++ NS+ F + L L
Sbjct: 43 GTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-YGLNTNHRIVVCSENSLQFFMPVLGAL 101
Query: 115 YLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDK-LRSWGTTPVVAVPENLVN 173
++G V P N + + E+ + + + ++ F + + K L P++ + ++
Sbjct: 102 FIGVAVAPANDIYNERELLNSMNISQP--TVVFVSKKGLQKILNVQKKLPIIQ--KIIIM 157
Query: 174 DFKEGR--FSDFHKLIA-------GKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTH 224
D K F + + ++D V R + A I+ SSG+TG KG L H
Sbjct: 158 DSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPH 217
Query: 225 GNFIAAVELFVRFEASQYEYLSSEAV----FLAVLPMFHIYXXXXXXXXXXXXXXXXXXM 280
VRF ++ ++ + L+V+P FH M
Sbjct: 218 RTAC------VRFSHARDPIFGNQIIPDTAILSVVP-FHHGFGMFTTLGYLICGFRVVLM 270
Query: 281 RRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKII 340
RFE L+ + Y + +VP + K+ + L +L +++SG AP + ++
Sbjct: 271 YRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL-IDKYDLSNLHEIASGGAPLSKEVG 329
Query: 341 EDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFL 400
E F QGYG+TE+T+ + K +VG + P +AKVVD G L
Sbjct: 330 EAVAKRFHLPGIRQGYGLTETTSAIL--ITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTL 387
Query: 401 PPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVI 460
GEL +RGP M Y+NN +AT + IDK+GWLH+GDIAY+DED + +IVDRLK +I
Sbjct: 388 GVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLI 447
Query: 461 KYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYL 520
KY GYQ++PA+LE++L+ HP I D V G D GE+P A VV G T+TE ++DY+
Sbjct: 448 KYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYV 507
Query: 521 AQRVAPYKKVR-RVVFTKSIPKSAAGKVLRRELRKFL 556
A +V KK+R VVF +PK GK+ R++R+ L
Sbjct: 508 ASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREIL 544
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 229 bits (585), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 160/517 (30%), Positives = 256/517 (49%), Gaps = 30/517 (5%)
Query: 55 GRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALL 114
G A D+ +I+Y + F + +A ++ +G++ +++ NS+ F + L L
Sbjct: 38 GTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-YGLNTNHRIVVCSENSLQFFMPVLGAL 96
Query: 115 YLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDK-LRSWGTTPVVAVPENLVN 173
++G V P N + + E+ + + + ++ F + + K L P++ + ++
Sbjct: 97 FIGVAVAPANDIYNERELLNSMNISQP--TVVFVSKKGLQKILNVQKKLPIIQ--KIIIM 152
Query: 174 DFKEGR--FSDFHKLIA-------GKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTH 224
D K F + + ++D V R + A I+ SSG+TG KG L H
Sbjct: 153 DSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPH 212
Query: 225 GNFIAAVELFVRFEASQYEYLSSEAV----FLAVLPMFHIYXXXXXXXXXXXXXXXXXXM 280
VRF ++ ++ + L+V+P FH M
Sbjct: 213 RTAC------VRFSHARDPIFGNQIIPDTAILSVVP-FHHGFGMFTTLGYLICGFRVVLM 265
Query: 281 RRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKII 340
RFE L+ + Y + +VP + K+ + L +L +++SG AP + ++
Sbjct: 266 YRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL-IDKYDLSNLHEIASGGAPLSKEVG 324
Query: 341 EDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFL 400
E F QGYG+TE+T+ + K +VG + P +AKVVD G L
Sbjct: 325 EAVAKRFHLPGIRQGYGLTETTSAIL--ITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTL 382
Query: 401 PPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVI 460
GEL +RGP M Y+NN +AT + IDK+GWLH+GDIAY+DED + +IVDRLK +I
Sbjct: 383 GVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLI 442
Query: 461 KYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYL 520
KY GYQ++PA+LE++L+ HP I D V G D GE+P A VV G T+TE ++DY+
Sbjct: 443 KYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYV 502
Query: 521 AQRVAPYKKVR-RVVFTKSIPKSAAGKVLRRELRKFL 556
A +V KK+R VVF +PK GK+ R++R+ L
Sbjct: 503 ASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREIL 539
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 229 bits (584), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 160/517 (30%), Positives = 256/517 (49%), Gaps = 30/517 (5%)
Query: 55 GRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALL 114
G A D+ +I+Y + F + +A ++ +G++ +++ NS+ F + L L
Sbjct: 38 GTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-YGLNTNHRIVVCSENSLQFFMPVLGAL 96
Query: 115 YLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDK-LRSWGTTPVVAVPENLVN 173
++G V P N + + E+ + + + ++ F + + K L P++ + ++
Sbjct: 97 FIGVAVAPANDIYNERELLNSMNISQP--TVVFVSKKGLQKILNVQKKLPIIQ--KIIIM 152
Query: 174 DFKEGR--FSDFHKLIA-------GKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTH 224
D K F + + ++D V R + A I+ SSG+TG KG L H
Sbjct: 153 DSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPH 212
Query: 225 GNFIAAVELFVRFEASQYEYLSSEAV----FLAVLPMFHIYXXXXXXXXXXXXXXXXXXM 280
VRF ++ ++ + L+V+P FH M
Sbjct: 213 RTAC------VRFSHARDPIFGNQIIPDTAILSVVP-FHHGFGMFTTLGYLICGFRVVLM 265
Query: 281 RRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKII 340
RFE L+ + Y + +VP + K+ + L +L +++SG AP + ++
Sbjct: 266 YRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL-IDKYDLSNLHEIASGGAPLSKEVG 324
Query: 341 EDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFL 400
E F QGYG+TE+T+ + K +VG + P +AKVVD G L
Sbjct: 325 EAVAKRFHLPGIRQGYGLTETTSAIL--ITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTL 382
Query: 401 PPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVI 460
GEL +RGP M Y+NN +AT + IDK+GWLH+GDIAY+DED + +IVDRLK +I
Sbjct: 383 GVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLI 442
Query: 461 KYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYL 520
KY GYQ++PA+LE++L+ HP I D V G D GE+P A VV G T+TE ++DY+
Sbjct: 443 KYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYV 502
Query: 521 AQRVAPYKKVR-RVVFTKSIPKSAAGKVLRRELRKFL 556
A +V KK+R VVF +PK GK+ R++R+ L
Sbjct: 503 ASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREIL 539
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 228 bits (581), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 162/517 (31%), Positives = 256/517 (49%), Gaps = 30/517 (5%)
Query: 55 GRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALL 114
G A D+ +I+Y + F + +A ++ +G++ +++ NS+ F + L L
Sbjct: 43 GTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-YGLNTNHRIVVSSENSLQFFMPVLGAL 101
Query: 115 YLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDK-LRSWGTTPVVAVPENLVN 173
++G V P N + E+ + + + ++ F + + K L P++ + ++
Sbjct: 102 FIGVAVAPANDCYNERELLNSMNISQP--TVVFVSKKGLQKILNVQKKLPIIQ--KIIIM 157
Query: 174 DFKEGR--FSDFHKLIA-------GKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTH 224
D K F + + ++D V R + A I+ SSG+TG KG L H
Sbjct: 158 DSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPH 217
Query: 225 GNFIAAVELFVRFEASQ----YEYLSSEAVFLAVLPMFHIYXXXXXXXXXXXXXXXXXXM 280
L VRF ++ ++ + L+V+P FH M
Sbjct: 218 ------RALAVRFSHARDPIFGNQIAPDTAILSVVP-FHHGFGMFTTLGYLISGFRVVLM 270
Query: 281 RRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKII 340
RFE L+ + Y + +VP + L K+ + L +L +++SG AP + ++
Sbjct: 271 YRFEEELFLRSLQDYKIQSALLVPTLFSFLAKSTL-IDKYDLSNLHEIASGGAPLSKEVG 329
Query: 341 EDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFL 400
E F QGYG+TE+T+ K K +VG + P +AKVVD G L
Sbjct: 330 EAVAKRFHLPGIRQGYGLTETTSAIL--ITPKGDDKPGAVGKVVPFFEAKVVDLDTGKTL 387
Query: 401 PPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVI 460
GEL +RGP M Y+NN +AT + IDK+GWLH+GDIAY+DED + +IVDRLK +I
Sbjct: 388 GVNQRGELSVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLI 447
Query: 461 KYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYL 520
KY G Q++PA+LE++L+ HP I D V G D GE+P A VV G T+TE ++DY+
Sbjct: 448 KYKGCQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYV 507
Query: 521 AQRVAPYKKVR-RVVFTKSIPKSAAGKVLRRELRKFL 556
A +V KK+R VVF +PK GK+ R++R+ L
Sbjct: 508 ASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREIL 544
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 228 bits (580), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 163/517 (31%), Positives = 254/517 (49%), Gaps = 30/517 (5%)
Query: 55 GRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALL 114
G A ++++G SY + + L++ +G+ + L N F + +A L
Sbjct: 40 GAIAFTNAVTGVDYSYAEYLEKSXXLGKALQN-YGLVVDGRIALCSENCEEFFIPVIAGL 98
Query: 115 YLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKL----RSWGTTPVVAVPEN 170
++G V P N + ++ E+ + + K I F+ + +DK+ ++ T + + ++
Sbjct: 99 FIGVGVAPTNEIYTLRELVHSLGISKPTI--VFSSKKGLDKVITVQKTVTTIKTIVILDS 156
Query: 171 LVNDFKEGRFSDFHK------LIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTH 224
V+ F K A F VE V R++ A I+ SSG+TG KG +LTH
Sbjct: 157 KVDYRGYQCLDTFIKRNTPPGFQASSFKTVE--VDRKEQVALIMNSSGSTGLPKGVQLTH 214
Query: 225 GNFIAAVELFVRFEASQ----YEYLSSEAVFLAVLPMFHIYXXXXXXXXXXXXXXXXXXM 280
N + RF ++ +S L V+P FH +
Sbjct: 215 ENIVT------RFSHARDPIYGNQVSPGTAVLTVVP-FHHGFGMFTTLGYLICGFRVVML 267
Query: 281 RRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKII 340
+F+ LK + Y T +VP + L K+ L L +L +++SG AP + ++
Sbjct: 268 TKFDEETFLKTLQDYKCTSVILVPTLFAILNKSEL-LNKYDLSNLVEIASGGAPLSKEVG 326
Query: 341 EDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFL 400
E F QGYG+TE+T+ + K + G + P +AKV+D L
Sbjct: 327 EAVARRFNLPGVRQGYGLTETTSAII--ITPEGDDKPGASGKVVPLFKAKVIDLDTKKSL 384
Query: 401 PPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVI 460
P GE+ ++GP MK Y+NN +AT ID+EGWLHTGDI Y+DE+ + +IVDRLK +I
Sbjct: 385 GPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLI 444
Query: 461 KYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYL 520
KY GYQ+ PA+LE+VL+ HP I D V G D V GE+P A VV G +TE V+DY+
Sbjct: 445 KYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYV 504
Query: 521 AQRVAPYKKVR-RVVFTKSIPKSAAGKVLRRELRKFL 556
A +V+ K++R V F +PK GK+ R +R+ L
Sbjct: 505 ASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREIL 541
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 227 bits (579), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 162/517 (31%), Positives = 257/517 (49%), Gaps = 30/517 (5%)
Query: 55 GRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALL 114
G A ++++G SY + + L++ +G+ + L N F + +A L
Sbjct: 40 GAIAFTNAVTGVDYSYAEYLEKSCXLGKALQN-YGLVVDGRIALCSENCEEFFIPVIAGL 98
Query: 115 YLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKL----RSWGTTPVVAVPEN 170
++G V P N + ++ E+ + + +K ++ F+ + +DK+ ++ T + + ++
Sbjct: 99 FIGVGVAPTNEIYTLRELVHSLGI--SKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDS 156
Query: 171 LVNDFKEGRFSDFHK------LIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTH 224
V+ F K A F VE V R++ A I+ SSG+TG KG +LTH
Sbjct: 157 KVDYRGYQCLDTFIKRNTPPGYQASSFKTVE--VDRKEQVALIMNSSGSTGLPKGVQLTH 214
Query: 225 GNFIAAVELFVRFEASQ----YEYLSSEAVFLAVLPMFHIYXXXXXXXXXXXXXXXXXXM 280
N + RF ++ +S L V+P FH +
Sbjct: 215 ENIVT------RFSHARDPIYGNQVSPGTAVLTVVP-FHHGFGMFTTLGYLICGFRVVML 267
Query: 281 RRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKII 340
+F+ LK + Y T+ +VP + L K+ L L +L +++SG AP + ++
Sbjct: 268 TKFDEETFLKTLQDYKCTNVILVPTLFAILNKSEL-LNKYDLSNLVEIASGGAPLSKEVG 326
Query: 341 EDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFL 400
E F QGYG+TE+T+ + K + G + P +AKV+D L
Sbjct: 327 EAVARRFNLPGVRQGYGLTETTSAII--ITPEGDDKPGASGKVVPLFKAKVIDLDTKKSL 384
Query: 401 PPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVI 460
P GE+ ++GP MK Y+NN +AT ID+EGWLHTGDI Y+DE+ + +IVDRLK +I
Sbjct: 385 GPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLI 444
Query: 461 KYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYL 520
KY GYQ+ PA+LE+VL+ HP I D V G D V GE+P A VV G +TE V+DY+
Sbjct: 445 KYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYV 504
Query: 521 AQRVAPYKKVR-RVVFTKSIPKSAAGKVLRRELRKFL 556
A +V+ K++R V F +PK GK+ R +R+ L
Sbjct: 505 ASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREIL 541
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 227 bits (578), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 162/517 (31%), Positives = 256/517 (49%), Gaps = 30/517 (5%)
Query: 55 GRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALL 114
G A ++++G SY + + L++ +G+ + L N F + +A L
Sbjct: 40 GAIAFTNAVTGVDYSYAEYLEKSCXLGKALQN-YGLVVDGRIALCSENCEEFFIPVIAGL 98
Query: 115 YLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKL----RSWGTTPVVAVPEN 170
++G V P N + ++ E+ + + +K ++ F+ + +DK+ ++ T + + ++
Sbjct: 99 FIGVGVAPTNEIYTLRELVHSLGI--SKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDS 156
Query: 171 LVNDFKEGRFSDFHK------LIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTH 224
V+ F K A F VE V R++ A I+ SSG+TG KG +LTH
Sbjct: 157 KVDYRGYQCLDTFIKRNTPPGFQASSFKTVE--VDRKEQVALIMNSSGSTGLPKGVQLTH 214
Query: 225 GNFIAAVELFVRFEASQ----YEYLSSEAVFLAVLPMFHIYXXXXXXXXXXXXXXXXXXM 280
N + RF ++ +S L V+P FH +
Sbjct: 215 ENIVT------RFSHARDPIYGNQVSPGTAVLTVVP-FHHGFGMFTTLGYLICGFRVVML 267
Query: 281 RRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKII 340
+F+ LK + Y T +VP + L K+ L L +L +++SG AP + ++
Sbjct: 268 TKFDEETFLKTLQDYKCTSVILVPTLFAILNKSEL-LNKYDLSNLVEIASGGAPLSKEVG 326
Query: 341 EDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFL 400
E F QGYG+TE+T+ + K + G + P +AKV+D L
Sbjct: 327 EAVARRFNLPGVRQGYGLTETTSAII--ITPEGDDKPGASGKVVPLFKAKVIDLDTKKSL 384
Query: 401 PPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVI 460
P GE+ ++GP MK Y+NN +AT ID+EGWLHTGDI Y+DE+ + +IVDRLK +I
Sbjct: 385 GPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLI 444
Query: 461 KYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYL 520
KY GYQ+ PA+LE+VL+ HP I D V G D V GE+P A VV G +TE V+DY+
Sbjct: 445 KYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYV 504
Query: 521 AQRVAPYKKVR-RVVFTKSIPKSAAGKVLRRELRKFL 556
A +V+ K++R V F +PK GK+ R +R+ L
Sbjct: 505 ASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREIL 541
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 150/507 (29%), Positives = 242/507 (47%), Gaps = 41/507 (8%)
Query: 58 ALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLG 117
A V+ + ++Y Q+ L A L GI++GD V LL+PNS+ F +F LG
Sbjct: 34 AYVEPSTDVRMTYAQMNALANRCADVL-TALGIAKGDRVALLMPNSVEFCCLFYGAAKLG 92
Query: 118 AIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWG--TTPVV------AVPE 169
A+ +P+N L+ E+ +F + ++ K+ +G + PV+ A P
Sbjct: 93 AVAVPINTRLAAPEV-------------SFILSDSGSKVVIYGAPSAPVIDAIRAQADPP 139
Query: 170 NLVNDFKEGRFSDFHKLIAGKFDLVERPVIR--QQDTAAILYSSGTTGASKGAELTHGNF 227
V D+ G S +L + D P + D I+Y+SGTTG KG TH +
Sbjct: 140 GTVTDWI-GADSLAERLRSAAAD---EPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESV 195
Query: 228 IAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYXXXXXXXXXXXXXXXXXXMRRFEASE 287
+A + AS + + + L LPMFH+ M +F+A++
Sbjct: 196 HSAASSW----ASTIDVRYRDRLLLP-LPMFHV-AALTTVIFSAMRGVTLISMPQFDATK 249
Query: 288 MLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAF 347
+ +I + V VP IL + + + + +G AP +I+ + A
Sbjct: 250 VWSLIVEERVCIGGAVPAILNFMRQVPE-FAELDAPDFRYFITGGAPMPEALIKIY--AA 306
Query: 348 PHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGE 407
+++ +QGY +TES GT + K S G A V +G G GE
Sbjct: 307 KNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGR-ATMFTDVAVRGDDGVIREHGE-GE 364
Query: 408 LWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQI 467
+ ++ +KEY N +AT D GW TGDI D++GYLYI DRLK++I G +
Sbjct: 365 VVIKSDILLKEYWNRPEATRDAFDN-GWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENV 423
Query: 468 SPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPY 527
PA++E+V+I P + +VAV G D+ GEI A VV D + ++E +++Y R+A Y
Sbjct: 424 YPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVV-ADQNEVSEQQIVEYCGTRLARY 482
Query: 528 KKVRRVVFTKSIPKSAAGKVLRRELRK 554
K ++V+F ++IP++ GK+L+ LR+
Sbjct: 483 KLPKKVIFAEAIPRNPTGKILKTVLRE 509
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 169 bits (427), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 153/534 (28%), Positives = 245/534 (45%), Gaps = 53/534 (9%)
Query: 50 SHKHNGRTALVDSLSGYSISYPQ------LFPLVQSVASGLRHHFGISQGDAVLLLLPNS 103
+ K +TA++ + + +P+ + + + +ASG+ G+ +G+ V + +PNS
Sbjct: 29 AEKFGEKTAIISAEPKFPSEFPESXNFLEICEVTKKLASGISRK-GVRKGEHVGVCIPNS 87
Query: 104 IYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCK-TKISLAFTIYENVDKLRSWGTT 162
I + AL + A +P+NP E++ + + T + + +YEN +
Sbjct: 88 IDYVXTIYALWRVAATPVPINPXYKSFELEHILNDSEATTLVVHSXLYENFKPVLEKTGV 147
Query: 163 PVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAEL 222
V V VN E S G D V ++D A I Y+ GTTG KG L
Sbjct: 148 ERVFVVGGEVNSLSEVXDS-------GSEDFENVKVNPEEDVALIPYTGGTTGXPKGVXL 200
Query: 223 THGNFIA-AVELFVRFEASQYEYLSSEAVFLAVLPMFHIYXXXXXXXXXXXXXXXXXXMR 281
TH N A A++L V LS + P FH
Sbjct: 201 THFNLAANALQLAVA------TGLSHXDTIVGCXPXFH-SAEFGLVNLXVTVGNEYVVXG 253
Query: 282 RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKS---------LKQVSSGA 332
F + + I+KY T VPP L L N+L+S LK ++GA
Sbjct: 254 XFNQEXLAENIEKYKGTFSWAVPPALNVLV--------NTLESSNKTYDWSYLKVFATGA 305
Query: 333 APANSKIIEDFVG------AFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPN 386
P ++E + P + Q +G TE+ T + K + G+ +
Sbjct: 306 WPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPXVTTN-PPLRLDKSTTQGVPXSD 364
Query: 387 IQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMST--IDKEG--WLHTGDIA 442
I+ KV+ +G L G +GE+ +RGP K Y D++G + TGD+
Sbjct: 365 IELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVG 424
Query: 443 YFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAF 502
+ DE+G+L+ DR+KEVIKY GY I+P +LE +L H + DVAV G D+ GE+P AF
Sbjct: 425 FIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXKHEAVXDVAVIGKPDEEAGEVPKAF 484
Query: 503 VVRRDG--STLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554
+V + + E +I+++ +R++ YK+VR V F + +P++A+GK+LRR LR+
Sbjct: 485 IVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLRE 538
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 131/499 (26%), Positives = 229/499 (45%), Gaps = 27/499 (5%)
Query: 60 VDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119
+++ +G ISY +L VA+ L G+ GD V S+ V++LA + G +
Sbjct: 21 IETAAGDKISYAELVARAGRVANVLVAR-GLQVGDRVAAQTEKSVEALVLYLATVRAGGV 79
Query: 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVA----VPENLVNDF 175
+P+N ++ E+ +T + KI + D + G + A E L D
Sbjct: 80 YLPLNTAYTLHELDYFITDAEPKIVVC-------DPSKRDGIAAIAAKVGATVETLGPDG 132
Query: 176 KEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFV 235
+ G +D + F ++R D AAILY+SGTTG SKGA L+H N + V
Sbjct: 133 R-GSLTDAAAGASEAFATIDRGA---DDLAAILYTSGTTGRSKGAXLSHDNLASNSLTLV 188
Query: 236 RFEASQYEYLSSEAVFLAVLPMFHIYXXXXXXXXXXXXXXXXXXMRRFEASEMLKVIDKY 295
Y + + V + LP++H + + +F+ ++L + +
Sbjct: 189 -----DYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDKILDLXAR- 242
Query: 296 GVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQG 355
T VP L ++ + L + + SG+AP + ++ H ++
Sbjct: 243 -ATVLXGVPTFYTRLLQSPR-LTKETTGHXRLFISGSAPLLADTHREWSAKTGHA-VLER 299
Query: 356 YGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGT 415
YG TE+ + ++ + +VG P + A+V D G LP G G + ++GP
Sbjct: 300 YGXTETNXNTSNPYDGDRVPG--AVGPALPGVSARVTDPETGKELPRGDIGXIEVKGPNV 357
Query: 416 MKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETV 475
K Y + T S +G+ TGD+ DE GY++I+ R K+++ G+ + P ++E+
Sbjct: 358 FKGYWRXPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESE 417
Query: 476 LICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVF 535
+ P +++ AV G GE A VVR G+T+ EA V+ L ++A +K ++V+F
Sbjct: 418 IDAXPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKXPKKVIF 477
Query: 536 TKSIPKSAAGKVLRRELRK 554
+P++ GKV + LR+
Sbjct: 478 VDDLPRNTXGKVQKNVLRE 496
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 158 bits (400), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 148/519 (28%), Positives = 237/519 (45%), Gaps = 37/519 (7%)
Query: 55 GRTALVDSLSG---YSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFL 111
GR +V L + +Y +++ + + GLR G+ GD V L N +
Sbjct: 32 GRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRA-LGVGVGDRVATLGFNHFRHLEAYF 90
Query: 112 ALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISL-AFTIYENVDKLRSWGTTPVVAVPEN 170
A+ +GA++ NP LS EI + + K+ L + V+ +R T V
Sbjct: 91 AVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKT----VQHF 146
Query: 171 LVNDFK--EGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFI 228
+V D K EG + + + + + D V P ++ + Y++GTTG KG +H +
Sbjct: 147 VVMDEKAPEGYLA-YEEALGEEADPVRVP---ERAACGMAYTTGTTGLPKGVVYSHRALV 202
Query: 229 AAVELFVRFEASQYE--YLSSEAVFLAVLPMFHIYXXXXXXXXXXXXXXXXXXMRRFEAS 286
AS + LS + V L V+PMFH+ R + +
Sbjct: 203 -----LHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPA 257
Query: 287 EMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGA 346
++++ D GVT VP + +AL + G+ LK+L+++ G + A +I F
Sbjct: 258 SLVELFDGEGVTFTAGVPTVWLALADYLES-TGHRLKTLRRLVVGGSAAPRSLIARFERM 316
Query: 347 FPHVDFIQGYGMTESTAVGTRGF---------NTKKFSKYFSVGLLAPNIQAKVVDWVNG 397
V+ QGYG+TE++ V + F +K + GL P ++ +V D G
Sbjct: 317 --GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEG 373
Query: 398 CFLPPG--STGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDR 455
+P + GE+ L+GP Y N +AT S + +G+ TGDIA +DE+GY+ I DR
Sbjct: 374 RPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDR 433
Query: 456 LKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAA 515
LK++IK G IS DLE L+ HP++ + AV E P+A VV R E
Sbjct: 434 LKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEEL 493
Query: 516 VIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554
L A ++ VF + IP+++AGK L+R LR+
Sbjct: 494 NEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALRE 532
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 138/508 (27%), Positives = 219/508 (43%), Gaps = 43/508 (8%)
Query: 56 RTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLY 115
RTA + + G +++ + +ASGL G+ GD V +L N + A+
Sbjct: 22 RTAFM--VDGVRLTHRDYLARAERLASGLLRD-GVHTGDRVAILSQNCSEMIELIGAVAL 78
Query: 116 LGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVA-VPENLVND 174
+GAI++P+N L+ EI + + +A T Y ++ G P + V +
Sbjct: 79 IGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVA----GVLPSLGGVKKAYAIG 134
Query: 175 FKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELF 234
G F+ F L + P D I++++ G +GA ++ GN + A
Sbjct: 135 DGSGPFAPFKDLASDT--PFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSL 192
Query: 235 VRFEASQYEYLSSEAVFLAVLPMFHIYXXXXXXXXXXXXXXXXXXMRRFEASEMLKVIDK 294
V L+ V L +LP+FH+ + F+ ++ + I+
Sbjct: 193 V-----DAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAK-FDPAQAARDIEA 246
Query: 295 YGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQ 354
+ VT P+L + A L SL+ V+ P + IE F P+ F
Sbjct: 247 HKVTVMAEFAPMLGNILDQA---APAQLASLRAVTGLDTP---ETIERFEATCPNATFWA 300
Query: 355 GYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCF-------LPPGSTGE 407
+G +E++ + T F+ Y P + + W LPPG GE
Sbjct: 301 TFGQSETSGLST-------FAPYRD----RPKSAGRPLFWRTVAVVDAEDRPLPPGEVGE 349
Query: 408 LWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRL--KEVIKYNGY 465
+ LRGP K Y NNA AT + GW HTGD+ FD DGYL+ R KE+IK G
Sbjct: 350 IVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGE 408
Query: 466 QISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVA 525
+ PA++E L HP I D V G D E A V + G ++ A+ +++A +A
Sbjct: 409 NVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASLIA 468
Query: 526 PYKKVRRVVFTKSIPKSAAGKVLRRELR 553
YKK + VVF +++PK A G + R ++
Sbjct: 469 RYKKPKHVVFVEALPKDAKGAIDRAAVK 496
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 151 bits (382), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 136/486 (27%), Positives = 219/486 (45%), Gaps = 39/486 (8%)
Query: 89 GISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFT 148
GI +GD V+L L + F L L LGAI +P +L +I ++ K+ +
Sbjct: 107 GIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIA 166
Query: 149 ---IYENVDKLRS-WGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPV----IR 200
+ E VD+ + G P+ + D EG + DF K + + ERP +
Sbjct: 167 EDDVPEQVDEAHAECGDIPLKKA--KVGGDVLEG-WIDFRKELEESSPIFERPTGEVSTK 223
Query: 201 QQDTAAILYSSGTTGASKGAELTHGN-----FIAAVELFVRFEASQYEYLSSEAVFLAVL 255
+D + +SSGT G K E H N I + + E Y +++ + +
Sbjct: 224 NEDICLVYFSSGTAGFPKMVE--HDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCV 281
Query: 256 PMFHIYXXXXXXXXXXXXXXXXXXMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAK 315
RFEA ML+ KYGVT F P I L K +
Sbjct: 282 ------WGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIK--E 333
Query: 316 GLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFS 375
L + +LK P N ++ F+ F + ++G+G TE T V F +
Sbjct: 334 DLSHYNFSTLKYAVVAGEPLNPEVFNRFL-EFTGIKLMEGFGQTE-TVVTIATFPWME-P 390
Query: 376 KYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWL-----RGPGTMKEYINNADATMSTI 430
K S+G P + +++D +G G GE+ + + G Y + + T T
Sbjct: 391 KPGSIGKPTPGYKIELMD-RDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW 449
Query: 431 DKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGA 490
+G+ HTGD+A+ DEDGYL+ V R ++IK +GY++ P ++E+ LI HP +L+ A+TG
Sbjct: 450 -HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGV 508
Query: 491 MDKVLGEIPVAFVVRRDGSTLTEA---AVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKV 547
D V G++ A +V T +++ + D++ APYK R + F +PK+ +GK+
Sbjct: 509 PDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKI 568
Query: 548 LRRELR 553
R E+R
Sbjct: 569 RRVEIR 574
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 139/498 (27%), Positives = 227/498 (45%), Gaps = 22/498 (4%)
Query: 69 SYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPN-SIYFPVIFLALLYLGAIVIPMNPLL 127
SY +L +A+G + GI Q D V++ LPN +F VIF AL LGA+ + P
Sbjct: 52 SYRELDTRADRLAAGFQK-LGIQQKDRVVVQLPNIKEFFEVIF-ALFRLGALPVFALPSH 109
Query: 128 SVSEIKKQVTLCKTKISLAFTI---YENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFH 184
SEI C+ + A+ I Y D RS +P L N G +F
Sbjct: 110 RSSEI---TYFCEFAEAAAYIIPDAYSGFD-YRSLARQVQSKLP-TLKNIIVAGEAEEFL 164
Query: 185 KLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEY 244
L + V+ P ++ D A + S G+TG SK TH ++I +++ V + +
Sbjct: 165 PLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSV-----EVCW 219
Query: 245 LSSEAVFLAVLPMFHIYXXXXXXXXXXXXXXXXXXMRRFEA-SEMLKVIDKYGVTHFPVV 303
L V+LA LPM H Y + + + +I++ VT +V
Sbjct: 220 LDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALV 279
Query: 304 PPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTA 363
PP+ M AA + L SL+ + G A +++ F Q +GM E
Sbjct: 280 PPLAMVWMDAASSR-RDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMAEGLV 337
Query: 364 VGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNA 423
TR + ++ ++P +++V D + + PG TG L RGP T++ Y
Sbjct: 338 NYTRLDDPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAE 396
Query: 424 DATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEIL 483
+ ++ ++G+ TGDI DGY+ + R K+ I G +++ ++E L+ HP +
Sbjct: 397 EHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVH 456
Query: 484 DVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQR-VAPYKKVRRVVFTKSIPKS 542
D A+ D+ LGE F++ RD + A + +L +R +A YK RV F +S P++
Sbjct: 457 DAAMVSMPDQFLGERSCVFIIPRDEAP-KAAELKAFLRERGLAAYKIPDRVEFVESFPQT 515
Query: 543 AAGKVLRRELRKFLTSKL 560
GKV ++ LR+ ++ KL
Sbjct: 516 GVGKVSKKALREAISEKL 533
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 123/495 (24%), Positives = 217/495 (43%), Gaps = 19/495 (3%)
Query: 60 VDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119
+++ +G ISY +L VA+ L G+ GD V S+ V++LA + G +
Sbjct: 21 IETAAGDXISYAELVARAGRVANVLVAR-GLQVGDRVAAQTEXSVEALVLYLATVRAGGV 79
Query: 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGR 179
+P+N ++ E+ +T + I + + + V E L D + G
Sbjct: 80 YLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATV---ETLGPDGR-GS 135
Query: 180 FSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEA 239
+D + F ++R D AAILY+SGTTG S GA L+H N + V
Sbjct: 136 LTDAAAGASEAFATIDR---GADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLV---- 188
Query: 240 SQYEYLSSEAVFLAVLPMFHIYXXXXXXXXXXXXXXXXXXMRRFEASEMLKVIDKYGVTH 299
Y + + V + LP++H + + F+ +L ++ + T
Sbjct: 189 -DYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMAR--ATV 245
Query: 300 FPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMT 359
VP L ++ + L + ++ SG+AP + ++ H ++ YGMT
Sbjct: 246 LMGVPTFYTRLLQSPR-LTXETTGHMRLFISGSAPLLADTHREWSAXTGHA-VLERYGMT 303
Query: 360 ESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEY 419
E+ + ++ + +VG P + A+V D G LP G G + + GP Y
Sbjct: 304 ETNMNTSNPYDGDRVPG--AVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGY 361
Query: 420 INNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICH 479
+ T S +G+ TGD+ DE GY++I+ R +++ G+ + P ++E+ +
Sbjct: 362 WRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAM 421
Query: 480 PEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSI 539
P +++ AV G GE A VVR G+T+ EA V+ L ++A + V+F +
Sbjct: 422 PGVVESAVIGVPHADFGEGVTAVVVRDXGATIDEAQVLHGLDGQLAXFXMPXXVIFVDDL 481
Query: 540 PKSAAGKVLRRELRK 554
P++ G V LR+
Sbjct: 482 PRNTMGAVQXNVLRE 496
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 133/497 (26%), Positives = 219/497 (44%), Gaps = 20/497 (4%)
Query: 69 SYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLS 128
SY +L +A+G + GI Q D V++ LPN F + AL LGA+ + P
Sbjct: 52 SYRELDTRADRLAAGFQK-LGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHR 110
Query: 129 VSEIKKQVTLCKTKISLAFTI---YENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHK 185
SEI C+ + A+ I Y D RS +P L N G +F
Sbjct: 111 SSEI---TYFCEFAEAAAYIIPDAYSGFD-YRSLARQVQSKLP-TLKNIIVAGEAEEFLP 165
Query: 186 LIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYL 245
L + V+ P ++ D A + S G+TG SK TH ++I +++ V + +L
Sbjct: 166 LEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSV-----EVCWL 220
Query: 246 SSEAVFLAVLPMFHIYXXXXXXXXXXXXXXXXXXMRRFEA-SEMLKVIDKYGVTHFPVVP 304
V+LA LP H Y + + + +I++ VT +VP
Sbjct: 221 DHSTVYLAALPXAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVP 280
Query: 305 PILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAV 364
P+ AA + L SL+ + G A +++ F Q +G E
Sbjct: 281 PLAXVWXDAASSR-RDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGXAEGLVN 338
Query: 365 GTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNAD 424
TR + ++ +P +++V D + + PG TG L RGP T++ Y +
Sbjct: 339 YTRLDDPEEIIVNTQGKPXSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEE 397
Query: 425 ATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILD 484
++ ++G+ TGDI DGY+ + R K+ I G +++ ++E L+ HP + D
Sbjct: 398 HNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHD 457
Query: 485 VAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQR-VAPYKKVRRVVFTKSIPKSA 543
A D+ LGE F++ RD + A + +L +R +A YK RV F +S P++
Sbjct: 458 AAXVSXPDQFLGERSCVFIIPRDEAP-KAAELKAFLRERGLAAYKIPDRVEFVESFPQTG 516
Query: 544 AGKVLRRELRKFLTSKL 560
GKV ++ LR+ ++ KL
Sbjct: 517 VGKVSKKALREAISEKL 533
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 111/366 (30%), Positives = 180/366 (49%), Gaps = 31/366 (8%)
Query: 203 DTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYX 262
D A ++Y+SGTTG KGA + ++ +A Q+ + E V + LP+FH++
Sbjct: 156 DPALVVYTSGTTGPPKGAVIPRRALATTLDALA--DAWQW---TGEDVLVQGLPLFHVHG 210
Query: 263 XXXXXXXXXXXXXXXXXMRRFEASEMLKVIDK-----YGV-THFPVVPPILMALTKAAKG 316
+ RF + ++ +GV T + + L A + AK
Sbjct: 211 LVLGILGPLRRGGSVRHLGRFSTEGAARELNDGATMLFGVPTMYHRIAETLPADPELAKA 270
Query: 317 LCGNSLKSLKQVSSGAA-PANSKIIEDFVGAFPHVDFIQGYGMTES---TAVGTRGFNTK 372
L G L VS AA P + + + A I+ YGMTE+ T+V G
Sbjct: 271 LAGARL----LVSGSAALPVHD---HERIAAATGRRVIERYGMTETLMNTSVRADGE--- 320
Query: 373 KFSKYFSVGLLAPNIQAKVV--DWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTI 430
+ +VG+ P ++ ++V D L S GE+ +RGP EY+N DAT +
Sbjct: 321 --PRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAF 378
Query: 431 DKEGWLHTGDIAYFDEDGYLYIVDR-LKEVIKYNGYQISPADLETVLICHPEILDVAVTG 489
++G+ TGD+A D DGY+ IV R ++IK GY+I ++E L+ HPE+ + AVTG
Sbjct: 379 TEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTG 438
Query: 490 AMDKVLGEIPVAFVVRRDGSTLTEAAVI-DYLAQRVAPYKKVRRVVFTKSIPKSAAGKVL 548
D LGE VA++V D + + D++A R+AP+K+ R V + ++P++ GK++
Sbjct: 439 EPDPDLGERIVAWIVPADPAAPPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIM 498
Query: 549 RRELRK 554
+R L +
Sbjct: 499 KRALNR 504
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 131 bits (330), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 121/495 (24%), Positives = 214/495 (43%), Gaps = 19/495 (3%)
Query: 60 VDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119
+++ +G ISY +L VA+ L G+ GD V S+ V++LA + G +
Sbjct: 21 IETAAGDXISYAELVARAGRVANVLVAR-GLQVGDRVAAQTEXSVEALVLYLATVRAGGV 79
Query: 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGR 179
+P+N ++ E+ +T + I + + + V E L D + G
Sbjct: 80 YLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATV---ETLGPDGR-GS 135
Query: 180 FSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEA 239
+D + F ++R D AAILY+SGTTG S GA L+H N + V
Sbjct: 136 LTDAAAGASEAFATIDR---GADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLV---- 188
Query: 240 SQYEYLSSEAVFLAVLPMFHIYXXXXXXXXXXXXXXXXXXMRRFEASEMLKVIDKYGVTH 299
Y + + V + LP++H + + F+ +L ++ + T
Sbjct: 189 -DYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMAR--ATV 245
Query: 300 FPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMT 359
VP L ++ + L + ++ SG+AP + ++ H ++ YGMT
Sbjct: 246 LMGVPTFYTRLLQSPR-LTXETTGHMRLFISGSAPLLADTHREWSAXTGHA-VLERYGMT 303
Query: 360 ESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEY 419
E+ + ++ + +VG P + A+V D G LP G G + + GP Y
Sbjct: 304 ETNMNTSNPYDGDRVPG--AVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGY 361
Query: 420 INNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICH 479
+ T S +G+ TGD+ DE GY++I+ R +++ G+ + P ++E+ +
Sbjct: 362 WRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAM 421
Query: 480 PEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSI 539
P +++ AV G GE AFVV +EA V+ L ++A + V+F +
Sbjct: 422 PGVVESAVIGVPHADFGEGVTAFVVLXREFAPSEAQVLHGLDGQLAXFXMPXXVIFVDDL 481
Query: 540 PKSAAGKVLRRELRK 554
P++ G V LR+
Sbjct: 482 PRNTMGAVQXNVLRE 496
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 120/498 (24%), Positives = 215/498 (43%), Gaps = 22/498 (4%)
Query: 60 VDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119
+++ +G ISY +L VA+ L G+ GD V S+ V++LA + G +
Sbjct: 21 IETAAGDXISYAELVARAGRVANVLVAR-GLQVGDRVAAQTEXSVEALVLYLATVRAGGV 79
Query: 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGR 179
+P+N ++ E+ +T + I + + + V E L D + G
Sbjct: 80 YLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATV---ETLGPDGR-GS 135
Query: 180 FSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEA 239
+D + F ++R D AAILY+SGTTG S GA L+H N + V
Sbjct: 136 LTDAAAGASEAFATIDR---GADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLV---- 188
Query: 240 SQYEYLSSEAVFLAVLPMFHIYXXXXXXXXXXXXXXXXXXMRRFEASEMLKVIDKYGVTH 299
Y + + V + LP++H + + F+ +L ++ + T
Sbjct: 189 -DYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMAR--ATV 245
Query: 300 FPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMT 359
VP L ++ + L + ++ SG+AP + ++ H ++ YGMT
Sbjct: 246 LMGVPTFYTRLLQSPR-LTXETTGHMRLFISGSAPLLADTHREWSAXTGHA-VLERYGMT 303
Query: 360 ESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEY 419
E+ + ++ + +VG P + A+V D G LP G G + + GP Y
Sbjct: 304 ETNMNTSNPYDGDRVPG--AVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGY 361
Query: 420 INNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICH 479
+ T S +G+ TGD+ DE GY++I+ R +++ G+ + P ++E+ +
Sbjct: 362 WRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAM 421
Query: 480 PEILDVAVTGAMDKVLGEIPVAFVV-RRD--GSTLTEAAVIDYLAQRVAPYKKVRRVVFT 536
P +++ AV G GE AFVV R+ S + + ++ R+A + V+F
Sbjct: 422 PGVVESAVIGVPHADFGEGVTAFVVLXREFAPSEILAEELXAFVXDRLAXFXMPXXVIFV 481
Query: 537 KSIPKSAAGKVLRRELRK 554
+P++ G V LR+
Sbjct: 482 DDLPRNTMGAVQXNVLRE 499
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 131/538 (24%), Positives = 229/538 (42%), Gaps = 35/538 (6%)
Query: 31 PSVNLPANDSLLDVDSFIF--SHKHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHF 88
P+ + A +L + +++F + G+TA +D S +Y +L + AS LR
Sbjct: 12 PAATVEAPPALFNFAAYLFRLNETRAGKTAYIDDTG--STTYGELEERARRFASALRT-L 68
Query: 89 GISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKI----- 143
G+ + +LL++ +++ PV FL LY G + + N LL+ ++ +T +
Sbjct: 69 GVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASG 128
Query: 144 SLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSD-FHKLIAGKFDLVERPVIRQQ 202
+L + + ++ G +V+ P E R + F +LI +
Sbjct: 129 ALVQNVTQALESAEHDGCQLIVSQPRE-----SEPRLAPLFEELIDAAAPAAKAAATGCD 183
Query: 203 DTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYX 262
D A LYSSG+TG KG TH N EL+ A ++ V + +F Y
Sbjct: 184 DIAFWLYSSGSTGKPKGTVHTHANLYWTAELY----AKPILGIAENDVVFSAAKLFFAYG 239
Query: 263 XXXXXXXXXXXXXXXXXM-RRFEASEMLKVIDKYGVTHFPVV---PPILMALTKAAKGLC 318
M R A + + V H P V P L A + L
Sbjct: 240 LGNGLTFPLSVGATAILMAERPTADAIFARL----VEHRPTVFYGVPTLYANMLVSPNLP 295
Query: 319 GNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYF 378
+ +++ +S +I E F F + + G G TE + N +Y
Sbjct: 296 ARADVAIRICTSAGEALPREIGERFTAHF-GCEILDGIGSTEMLHIFLS--NRAGAVEYG 352
Query: 379 SVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHT 438
+ G P + ++ D G +P G G+L+++GP Y NN + + +T E W+ +
Sbjct: 353 TTGRPVPGYEIELRDEA-GHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGE-WIRS 410
Query: 439 GDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEI 498
GD +G R +++K +G +SP ++E VL+ H +L+ AV G L +
Sbjct: 411 GDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKT 470
Query: 499 PVAFVVRRD--GSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554
V++R+ S + + ++ R+AP+K R +VF +PK+A GK+ R +LR+
Sbjct: 471 RAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 139/552 (25%), Positives = 231/552 (41%), Gaps = 32/552 (5%)
Query: 16 SQWYSPETGIYHSKHPSVNLPANDSLLDVDSFIFSHKHNGRTALVDSLSGYSISYPQLFP 75
++W Y K +LP D + H + A++D +SY +L
Sbjct: 8 TRWPEEFARRYREKGYWQDLPLTD-------ILTRHAASDSIAVIDG--ERQLSYRELNQ 58
Query: 76 LVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLS--VSEIK 133
++A LR GI G+ L+ L N + F ALL LG V P+ L S SE+
Sbjct: 59 AADNLACSLRRQ-GIKPGETALVQLGNVAELYITFFALLKLG--VAPVLALFSHQRSELN 115
Query: 134 KQVTLCKTKISLA---FTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGK 190
+ + + +A ++ D L ++ T L+ND E D A
Sbjct: 116 AYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQDAINHPAED 175
Query: 191 FDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAV 250
F P + A S GTTG K TH ++ +V V E Q+ + +
Sbjct: 176 FTATPSPA---DEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSV--EICQF---TQQTR 227
Query: 251 FLAVLPMFHIYXXXXXXXXXXXXXXXXXXMRRFEASEM-LKVIDKYGVTHFPVVPP-ILM 308
+L +P H Y + ++ + +I+K+ V +VPP + +
Sbjct: 228 YLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSL 287
Query: 309 ALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRG 368
L +G L SLK + G A S + + A Q +GM E TR
Sbjct: 288 WLQALIEGESRAQLASLKLLQVGGARL-SATLAARIPAEIGCQLQQVFGMAEGLVNYTRL 346
Query: 369 FNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMS 428
++ + + + P+ + V D G LP G G L RGP T + Y + S
Sbjct: 347 DDSAEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNAS 405
Query: 429 TIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVT 488
D G+ +GD+ D +GY+ + R K+ I G +I+ ++E +L+ HP ++ A+
Sbjct: 406 AFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALV 465
Query: 489 GAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYL-AQRVAPYKKVRRVVFTKSIPKSAAGKV 547
D+++GE A++V ++ L V +L Q +A +K RV S+P +A GKV
Sbjct: 466 SMEDELMGEKSCAYLVVKE--PLRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKV 523
Query: 548 LRRELRKFLTSK 559
+++LR++L S+
Sbjct: 524 DKKQLRQWLASR 535
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 120/492 (24%), Positives = 219/492 (44%), Gaps = 34/492 (6%)
Query: 78 QSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVT 137
Q A+ L G+ +GD V ++LP + ++ L + G I +P + ++I ++
Sbjct: 84 QQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQ 143
Query: 138 LCKTKISLAF-TIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVER 196
+ K K +A + + VD + S P + + + LV++ + +F KL+
Sbjct: 144 MSKAKAIVAGDEVIQEVDTVAS--ECPSLRI-KLLVSEKSCDGWLNFKKLLNEASTTHHC 200
Query: 197 PVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVEL---FVRFEASQYEY-LSSEAVFL 252
Q+ +AI ++SGT+G K AE ++ + ++ + +AS + +S L
Sbjct: 201 VETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDTGWIL 260
Query: 253 AVLPMFHIYXXXXXXXXXXXXXXXXXXMRRFEASEMLKVIDKYGVTHFPVVPPILMALTK 312
+L + +F+ +LK + Y + P + L +
Sbjct: 261 NIL-------CSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQ 313
Query: 313 AAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTK 372
+ L L+ + + +E++ A +D + YG TE T + T
Sbjct: 314 --QDLSSYKFPHLQNCVTVGESLLPETLENWR-AQTGLDIRESYGQTE-TGLTCMVSKTM 369
Query: 373 KFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGP-----GTMKEYINNADATM 427
K + +G A +++D G LPPG+ G++ +R G Y++N D T
Sbjct: 370 KIKPGY-MGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTA 427
Query: 428 STIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAV 487
+ I + WL GD DEDGY + R ++I +GY+I P+++E L+ HP +++ AV
Sbjct: 428 ANIRGDFWL-LGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAV 486
Query: 488 TGAMDKVLGEIPVAFVV------RRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPK 541
+ D V GE+ AFVV D LT+ + ++ APYK R++ F ++PK
Sbjct: 487 ISSPDPVRGEVVKAFVVLASQFLSHDPEQLTK-ELQQHVKSVTAPYKYPRKIEFVLNLPK 545
Query: 542 SAAGKVLRRELR 553
+ GK+ R +LR
Sbjct: 546 TVTGKIQRAKLR 557
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 120/492 (24%), Positives = 219/492 (44%), Gaps = 34/492 (6%)
Query: 78 QSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVT 137
Q A+ L G+ +GD V ++LP + ++ L + G I +P + ++I ++
Sbjct: 84 QQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQ 143
Query: 138 LCKTKISLAF-TIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVER 196
+ K K +A + + VD + S P + + + LV++ + +F KL+
Sbjct: 144 MSKAKAIVAGDEVIQEVDTVAS--ECPSLRI-KLLVSEKSCDGWLNFKKLLNEASTTHHC 200
Query: 197 PVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVEL---FVRFEASQYEY-LSSEAVFL 252
Q+ +AI ++SGT+G K AE ++ + ++ + +AS + +S L
Sbjct: 201 VETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDTGWIL 260
Query: 253 AVLPMFHIYXXXXXXXXXXXXXXXXXXMRRFEASEMLKVIDKYGVTHFPVVPPILMALTK 312
+L + +F+ +LK + Y + P + L +
Sbjct: 261 NIL-------CSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQ 313
Query: 313 AAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTK 372
+ L L+ + + +E++ A +D + YG TE T + T
Sbjct: 314 --QDLSSYKFPHLQNCVTVGESLLPETLENWR-AQTGLDIRESYGQTE-TGLTCMVSKTM 369
Query: 373 KFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGP-----GTMKEYINNADATM 427
K + +G A +++D G LPPG+ G++ +R G Y++N D T
Sbjct: 370 KIKPGY-MGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTA 427
Query: 428 STIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAV 487
+ I + WL GD DEDGY + R ++I +GY+I P+++E L+ HP +++ AV
Sbjct: 428 ANIRGDFWL-LGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAV 486
Query: 488 TGAMDKVLGEIPVAFVV------RRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPK 541
+ D V GE+ AFVV D LT+ + ++ APYK R++ F ++PK
Sbjct: 487 ISSPDPVRGEVVKAFVVLASQFLSHDPEQLTK-ELQQHVKSVTAPYKYPRKIEFVLNLPK 545
Query: 542 SAAGKVLRRELR 553
+ GK+ R +LR
Sbjct: 546 TVTGKIQRAKLR 557
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 127/508 (25%), Positives = 221/508 (43%), Gaps = 30/508 (5%)
Query: 58 ALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLG 117
AL G +++ +L V++VA+ L H G+ V ++ PNS + LAL LG
Sbjct: 20 ALAVPARGLRLTHAELRARVEAVAARL-HADGLRPQQRVAVVAPNSADVVIAILALHRLG 78
Query: 118 AIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKE 177
A+ +NP L +E+ + + + ++ + D + G+ + +LV D +
Sbjct: 79 AVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEP 138
Query: 178 GRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRF 237
+ +E P A I Y+SGTTG K A + A E V F
Sbjct: 139 YSYGP----------PIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQ----RAAESRVLF 184
Query: 238 EASQYEYL-SSEAVFLAVLPMFHIYXXXXXXXXXXXXXXXXXXMRRFEASEMLKVIDKYG 296
++Q V L ++P++H+ + F + L+++ +
Sbjct: 185 MSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQ 244
Query: 297 VTHFPVVPPILMALTKAAKGLCGNSLK--SLKQVSSGAAPANSKIIEDFVGAFPHVDFIQ 354
VT P + AA G+SLK SL+ V+ A ++E P + +
Sbjct: 245 VTSL-FATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPG-EKVN 302
Query: 355 GYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGC--FLPPGSTGELWLRG 412
GYG TE A+ + K + G + + ++V G + G GEL +
Sbjct: 303 GYGTTE--AMNSLYMRQPKTGTEMAPGFFS---EVRIVRIGGGVDEIVANGEEGELIVAA 357
Query: 413 PGT-MKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPAD 471
+ Y+N AT + ++GW T D+A + +G + I+ R+ ++I G I P++
Sbjct: 358 SDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSE 416
Query: 472 LETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYL-AQRVAPYKKV 530
+E VL P + +V V G D+ G+ A VV R G TL+ A+ + + +A +K+
Sbjct: 417 IERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRP 476
Query: 531 RRVVFTKSIPKSAAGKVLRRELRKFLTS 558
+R +PK+A KVLRR+L + ++S
Sbjct: 477 KRYFILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 125/513 (24%), Positives = 218/513 (42%), Gaps = 48/513 (9%)
Query: 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPL 126
+SY +L L ++A+ L G+ +GD L+ LPN F ++F ALL G +V +N L
Sbjct: 55 QLSYIELDRLSTNLATRLAEK-GLGKGDTALVQLPNVAEFYIVFFALLKAGVVV--LNAL 111
Query: 127 LSVSEIK-----KQVT---LCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEG 178
S + + KQ+ L ++ F+ + +D L +P + + N
Sbjct: 112 YSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLN-------H 164
Query: 179 RFSDFHKLIAGKFDLVERPV--------IRQQDTAAILYSSGTTGASKGAELTHGNFIAA 230
+ +DF G D +E P + A S G+TG K TH ++ +
Sbjct: 165 QATDF-----GLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYS 219
Query: 231 VELFVRFEASQYEYLSSEAVFLAVLPMFHIYXXXXXXXXXXXXXXXXXXMR-RFEASEML 289
V +++ L+S L LP H + M E
Sbjct: 220 VR-----ASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCF 274
Query: 290 KVIDKYGVTHFPVVP-PILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFP 348
+I ++ V +VP ++M L KAA+ + ++SLK + G A E P
Sbjct: 275 SIIQRHQVNMASLVPSAVIMWLEKAAQ--YKDQIQSLKLLQVGGA----SFPESLARQVP 328
Query: 349 HV---DFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGST 405
V Q +GM E TR ++ + ++ + + K+VD +P G
Sbjct: 329 EVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDE-QYREVPEGEI 387
Query: 406 GELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGY 465
G L RGP T Y + + D++ + ++GD+ DG L +V R+K+ I G
Sbjct: 388 GMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGE 447
Query: 466 QISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVA 525
+I+ ++E +++ HPE++ A+ +D+ GE AF+V R+ + +A
Sbjct: 448 KIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHLMELGIA 507
Query: 526 PYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558
YK ++ +S+P +A GKV +++LR L +
Sbjct: 508 QYKLPDQIKLIESLPLTAVGKVDKKQLRSILNT 540
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 126/508 (24%), Positives = 220/508 (43%), Gaps = 30/508 (5%)
Query: 58 ALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLG 117
AL G +++ +L V++VA+ L H G+ V ++ PNS + LAL LG
Sbjct: 20 ALAVPARGLRLTHAELRARVEAVAARL-HADGLRPQQRVAVVAPNSADVVIAILALHRLG 78
Query: 118 AIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKE 177
A+ +NP L +E+ + + + ++ + D + G+ + +LV D +
Sbjct: 79 AVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEP 138
Query: 178 GRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRF 237
+ +E P A I Y+SGTTG K A + A E V F
Sbjct: 139 YSYGP----------PIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQ----RAAESRVLF 184
Query: 238 EASQYEYL-SSEAVFLAVLPMFHIYXXXXXXXXXXXXXXXXXXMRRFEASEMLKVIDKYG 296
++Q V L ++P++H+ + F + L+++ +
Sbjct: 185 MSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQ 244
Query: 297 VTHFPVVPPILMALTKAAKGLCGNSLK--SLKQVSSGAAPANSKIIEDFVGAFPHVDFIQ 354
VT P + AA G+SLK SL+ V+ A ++E P + +
Sbjct: 245 VTSL-FATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPG-EKVN 302
Query: 355 GYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGC--FLPPGSTGELWLRG 412
YG TE A+ + K + G + + ++V G + G GEL +
Sbjct: 303 AYGTTE--AMNSLYMRQPKTGTEMAPGFFS---EVRIVRIGGGVDEIVANGEEGELIVAA 357
Query: 413 PGT-MKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPAD 471
+ Y+N AT + ++GW T D+A + +G + I+ R+ ++I G I P++
Sbjct: 358 SDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSE 416
Query: 472 LETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYL-AQRVAPYKKV 530
+E VL P + +V V G D+ G+ A VV R G TL+ A+ + + +A +K+
Sbjct: 417 IERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRP 476
Query: 531 RRVVFTKSIPKSAAGKVLRRELRKFLTS 558
+R +PK+A KVLRR+L + ++S
Sbjct: 477 KRYFILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 126/508 (24%), Positives = 221/508 (43%), Gaps = 30/508 (5%)
Query: 58 ALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLG 117
AL G +++ +L V++VA+ L H G+ V ++ PNS + LAL LG
Sbjct: 20 ALAVPARGLRLTHAELRARVEAVAARL-HADGLRPQQRVAVVAPNSADVVIAILALHRLG 78
Query: 118 AIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKE 177
A+ +NP L +E+ + + + ++ + D + G+ + +LV D +
Sbjct: 79 AVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEP 138
Query: 178 GRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRF 237
+ +E P A I Y+SGTTG K A + A E V F
Sbjct: 139 YSYGP----------PIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQ----RAAESRVLF 184
Query: 238 EASQYEYL-SSEAVFLAVLPMFHIYXXXXXXXXXXXXXXXXXXMRRFEASEMLKVIDKYG 296
++Q V L ++P++H+ + F + L+++ +
Sbjct: 185 MSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQ 244
Query: 297 VTHFPVVPPILMALTKAAKGLCGNSLK--SLKQVSSGAAPANSKIIEDFVGAFPHVDFIQ 354
VT P + AA G+SLK SL+ V+ A ++E P + +
Sbjct: 245 VTSL-FATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPG-EKVN 302
Query: 355 GYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGC--FLPPGSTGELWLRG 412
YG TE A+ + K + G + + ++V G + G GEL +
Sbjct: 303 IYGTTE--AMNSLYMRQPKTGTEMAPGFFS---EVRIVRIGGGVDEIVANGEEGELIVAA 357
Query: 413 PGT-MKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPAD 471
+ Y+N +AT + ++GW T D+A + +G + I+ R+ ++I G I P++
Sbjct: 358 SDSAFVGYLNQPEATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSE 416
Query: 472 LETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYL-AQRVAPYKKV 530
+E VL P + +V V G D+ G+ A VV R G TL+ A+ + + +A +K+
Sbjct: 417 IERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRP 476
Query: 531 RRVVFTKSIPKSAAGKVLRRELRKFLTS 558
+R +PK+A KVLRR+L + ++S
Sbjct: 477 KRYFILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/354 (26%), Positives = 165/354 (46%), Gaps = 26/354 (7%)
Query: 203 DTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYX 262
D A+I+++SGTTG K T N A+ + + +L+VLP++HI
Sbjct: 164 DIASIMFTSGTTGPQKAVPQTFRNHYASA-----IGCKESLGFDRDTNWLSVLPIYHI-S 217
Query: 263 XXXXXXXXXXXXXXXXXMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSL 322
+ +F A ++L +I +TH +VP L L + +GL +
Sbjct: 218 GLSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQ--QGL--HEP 273
Query: 323 KSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGL 382
+L+++ G A ++ +IE + ++ +GMTE+ + ++ +VG+
Sbjct: 274 YNLQKILLGGAKLSATMIETALQY--NLPIYNSFGMTETCSQFLTATPEMLHARPDTVGM 331
Query: 383 LAPNIQAKVVDWVNGCFLPPGSTG--ELWLRGPGTMKEYINNADATMSTIDKEGWLHTGD 440
+ N+ K+ + P G EL ++G M Y+ D T + + G+ +TGD
Sbjct: 332 PSANVDVKIKN--------PNKEGHGELMIKGANVMNGYLYPTDLTGTF--ENGYFNTGD 381
Query: 441 IAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPV 500
IA D +GY+ I DR K++I G I P +ETV P I D G D G++P
Sbjct: 382 IAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPK 441
Query: 501 AFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554
+ V S +++A +I YL++ +A YK + ++P ++ GK+ R +L +
Sbjct: 442 LYFVSE--SDISKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYR 493
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 126/508 (24%), Positives = 220/508 (43%), Gaps = 30/508 (5%)
Query: 58 ALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLG 117
AL G +++ +L V++VA+ L H G+ V ++ PNS + LAL LG
Sbjct: 20 ALAVPARGLRLTHAELRARVEAVAARL-HADGLRPQQRVAVVAPNSADVVIAILALHRLG 78
Query: 118 AIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKE 177
A+ +NP L +E+ + + + ++ + D + G+ + +LV D +
Sbjct: 79 AVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEP 138
Query: 178 GRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRF 237
+ +E P A I Y+SGTTG K A + A E V F
Sbjct: 139 YSYGP----------PIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQ----RAAESRVLF 184
Query: 238 EASQYEYL-SSEAVFLAVLPMFHIYXXXXXXXXXXXXXXXXXXMRRFEASEMLKVIDKYG 296
++Q V L ++P++H+ + F + L+++ +
Sbjct: 185 MSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQ 244
Query: 297 VTHFPVVPPILMALTKAAKGLCGNSLK--SLKQVSSGAAPANSKIIEDFVGAFPHVDFIQ 354
VT P + AA G+SLK SL+ V+ A ++E P + +
Sbjct: 245 VTSL-FATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPG-EKVN 302
Query: 355 GYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGC--FLPPGSTGELWLRG 412
YG TE A+ + K + G + + ++V G + G GEL +
Sbjct: 303 IYGTTE--AMNSLYMRQPKTGTEMAPGFFS---EVRIVRIGGGVDEIVANGEEGELIVAA 357
Query: 413 PGT-MKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPAD 471
+ Y+N AT + ++GW T D+A + +G + I+ R+ ++I G I P++
Sbjct: 358 SDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSE 416
Query: 472 LETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYL-AQRVAPYKKV 530
+E VL P + +V V G D+ G+ A VV R G TL+ A+ + + +A +K+
Sbjct: 417 IERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRP 476
Query: 531 RRVVFTKSIPKSAAGKVLRRELRKFLTS 558
+R +PK+A KVLRR+L + ++S
Sbjct: 477 KRYFILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 112 bits (279), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 126/508 (24%), Positives = 220/508 (43%), Gaps = 30/508 (5%)
Query: 58 ALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLG 117
AL G +++ +L V++VA+ L H G+ V ++ PNS + LAL LG
Sbjct: 20 ALAVPARGLRLTHAELRARVEAVAARL-HADGLRPQQRVAVVAPNSADVVIAILALHRLG 78
Query: 118 AIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKE 177
A+ +NP L +E+ + + + ++ + D + G+ + +LV D +
Sbjct: 79 AVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEP 138
Query: 178 GRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRF 237
+ +E P A I Y+SGTTG K A + A E V F
Sbjct: 139 YSYGP----------PIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQ----RAAESRVLF 184
Query: 238 EASQYEYL-SSEAVFLAVLPMFHIYXXXXXXXXXXXXXXXXXXMRRFEASEMLKVIDKYG 296
++Q V L ++P++H+ + F + L+++ +
Sbjct: 185 MSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQ 244
Query: 297 VTHFPVVPPILMALTKAAKGLCGNSLK--SLKQVSSGAAPANSKIIEDFVGAFPHVDFIQ 354
VT P + AA G+SLK SL+ V+ A ++E P + +
Sbjct: 245 VTSL-FATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPG-EKVN 302
Query: 355 GYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGC--FLPPGSTGELWLRG 412
YG TE A+ + K + G + + ++V G + G GEL +
Sbjct: 303 IYGTTE--AMNSLYMRQPKTGTEMAPGFFS---EVRIVRIGGGVDEIVANGEEGELIVAA 357
Query: 413 PGT-MKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPAD 471
+ Y+N AT + ++GW T D+A + +G + I+ R+ ++I G I P++
Sbjct: 358 SDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSE 416
Query: 472 LETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYL-AQRVAPYKKV 530
+E VL P + +V V G D+ G+ A VV R G TL+ A+ + + +A +K+
Sbjct: 417 IERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRP 476
Query: 531 RRVVFTKSIPKSAAGKVLRRELRKFLTS 558
+R +PK+A KVLRR+L + ++S
Sbjct: 477 KRYFILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 126/508 (24%), Positives = 217/508 (42%), Gaps = 30/508 (5%)
Query: 58 ALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLG 117
AL G +++ +L V++VA+ L H G+ V ++ PNS + LAL LG
Sbjct: 20 ALAVPARGLRLTHAELRARVEAVAARL-HADGLRPQQRVAVVAPNSADVVIAILALHRLG 78
Query: 118 AIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKE 177
A+ +NP L +E+ + + + ++ + D + G+ + +LV D +
Sbjct: 79 AVPALLNPRLKSAELAELIKRGEXTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEP 138
Query: 178 GRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRF 237
+ +E P A I Y+SGTTG K A + A E V F
Sbjct: 139 YSYGP----------PIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQ----RAAESRVLF 184
Query: 238 EASQYEYL-SSEAVFLAVLPMFHIYXXXXXXXXXXXXXXXXXXMRRFEASEMLKVIDKYG 296
++Q V L + P++H+ + F + L+++ +
Sbjct: 185 XSTQVGLRHGRHNVVLGLXPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQ 244
Query: 297 VTHFPVVPPILMALTKAAKGLCGNSLK--SLKQVSSGAAPANSKIIEDFVGAFPHVDFIQ 354
VT P + AA G+SLK SL+ V+ A ++E P + +
Sbjct: 245 VTSL-FATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPG-EKVN 302
Query: 355 GYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGC--FLPPGSTGELWLRG 412
YG TE A + K + G + + ++V G + G GEL +
Sbjct: 303 IYGTTE--AXNSLYXRQPKTGTEXAPGFFS---EVRIVRIGGGVDEIVANGEEGELIVAA 357
Query: 413 PGT-MKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPAD 471
+ Y+N AT + ++GW T D+A + +G + I+ R+ + I G I P++
Sbjct: 358 SDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSE 416
Query: 472 LETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYL-AQRVAPYKKV 530
+E VL P + +V V G D+ G+ A VV R G TL+ A+ + + +A +K+
Sbjct: 417 IERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRP 476
Query: 531 RRVVFTKSIPKSAAGKVLRRELRKFLTS 558
+R +PK+A KVLRR+L + ++S
Sbjct: 477 KRYFILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 112/404 (27%), Positives = 176/404 (43%), Gaps = 34/404 (8%)
Query: 58 ALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLG 117
A V+ + ++Y Q+ L A L GI++GD V LL+PNS+ F +F LG
Sbjct: 20 AYVEPSTDVRMTYAQMNALANRCADVL-TALGIAKGDRVALLMPNSVEFCCLFYGAAKLG 78
Query: 118 AIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYEN-----VDKLRSWGTTPVVAVPENLV 172
A+ +P+N L+ E+ ++ +K+ IY +D +R+ A P V
Sbjct: 79 AVAVPINTRLAAPEVSFILSDSGSKV----VIYGAPSAPVIDAIRA------QADPPGTV 128
Query: 173 NDFKEGRFSDFHKLIAGKFDLVERPVIR--QQDTAAILYSSGTTGASKGAELTHGNFIAA 230
D+ G S +L + D P + D I+Y+SGTTG KG TH + +A
Sbjct: 129 TDWI-GADSLAERLRSAAAD---EPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSA 184
Query: 231 VELFVRFEASQYEYLSSEAVFLAVLPMFHIYXXXXXXXXXXXXXXXXXXMRRFEASEMLK 290
+ AS + + + L LPMFH+ M +F+A+++
Sbjct: 185 ASSW----ASTIDVRYRDRLLLP-LPMFHV-AALTTVIFSAMRGVTLISMPQFDATKVWS 238
Query: 291 VIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHV 350
+I + V VP IL + + + + +G AP +I+ + A ++
Sbjct: 239 LIVEERVCIGGAVPAILNFMRQVPE-FAELDAPDFRYFITGGAPMPEALIKIY--AAKNI 295
Query: 351 DFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWL 410
+ +QGY +TES GT + K S G A V +G G GE+ +
Sbjct: 296 EVVQGYALTESCGGGTLLLSEDALRKAGSAG-RATMFTDVAVRGDDGVIREHGE-GEVVI 353
Query: 411 RGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVD 454
+ +KEY N +AT D GW TGDI D++GYLYI D
Sbjct: 354 KSDILLKEYWNRPEATRDAFDN-GWFRTGDIGEIDDEGYLYIKD 396
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 129/547 (23%), Positives = 226/547 (41%), Gaps = 71/547 (12%)
Query: 65 GYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMN 124
GYSI+Y +L V VA L + G+ +GD V + +P + LA+ +GAI +
Sbjct: 111 GYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVF 170
Query: 125 PLLSVSEIKKQVTLCKTKISLAFTIYENV------------DKLRSW-----------GT 161
S + ++ ++ +K+ + T N D LR
Sbjct: 171 AGFSSNSLRDRINDGDSKVVIT-TDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTN 229
Query: 162 TPVVA--VPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKG 219
P VA P +L ++ ++ ++ + +D +LY+SG+TGA KG
Sbjct: 230 NPSVAFHAPRDLDWATEKKKYKTYYPCTP----------VDSEDPLFLLYTSGSTGAPKG 279
Query: 220 AELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMF----HIYXXXXXXXXXXXXXX 275
+ + ++ L +R+ ++ E VF + H Y
Sbjct: 280 VQHSTAGYLLGALLTMRYTFDTHQ----EDVFFTAGDIGWITGHTYVVYGPLLYGCATLV 335
Query: 276 XXXXMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGN-SLKSLKQVSSGAAP 334
S +ID++ VT F V P L L +A N SLKSL+ + S P
Sbjct: 336 FEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEP 395
Query: 335 ANSKIIEDFVGAF--PHVDFIQGYGMTES-----TAVGTRGFNTKKFSKYFSVGLLAPNI 387
+++ E + + + Y TES T + K S F I
Sbjct: 396 IAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFF----GI 451
Query: 388 QAKVVDWVNGCFLPPG-STGELWLRG--PGTMKEYINNADATMSTI--DKEGWLHTGDIA 442
A V+D G L + G L ++ P + N D + T G+ TGD A
Sbjct: 452 DAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGA 511
Query: 443 YFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAF 502
D+DGY++I+ R+ +V+ +G+++S A++E +I P + + AV G D + G+ AF
Sbjct: 512 AKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAF 571
Query: 503 VVRRDGSTLTEAA----------VIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRREL 552
VV ++ S+ + A ++ + + + P+ + ++ +PK+ +GK++RR L
Sbjct: 572 VVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRIL 631
Query: 553 RKFLTSK 559
RK L +
Sbjct: 632 RKILAGE 638
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 130/602 (21%), Positives = 234/602 (38%), Gaps = 71/602 (11%)
Query: 6 QTFSSERINTSQWYSPETGIYHSKHPSVNLPA---NDSLLDVDSFIFSH--KHNG-RTAL 59
TF E+ W +P + ++ N+ D L++ + + NG RTA+
Sbjct: 36 DTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAI 95
Query: 60 V----DSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLY 115
+ D+ ISY +L V A+ L GI +GD V + +P V LA
Sbjct: 96 IWEGDDTSQSKHISYRELHRDVCRFANTLLD-LGIKKGDVVAIYMPMVPEAAVAMLACAR 154
Query: 116 LGAIVIPMNPLLSVSEIKKQVTLCKTKISL----------AFTIYENVDKLRSWGTTPVV 165
+GA+ + S + ++ +++ + + + +NVD P V
Sbjct: 155 IGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALK---NPNV 211
Query: 166 AVPENLVN--------DFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGAS 217
E+++ D++EGR + LI + + +D ILY+SG+TG
Sbjct: 212 TSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKP 271
Query: 218 KGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMF---HIYXXXXXXXXXXXXX 274
KG T G ++ ++ ++Y + + + H Y
Sbjct: 272 KGVLHTTGGYLVYAATTFKY---VFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTL 328
Query: 275 XXXXXMRRFEASEMLKVIDKYGVTHFPVVPPILMAL-TKAAKGLCGNSLKSLKQVSSGAA 333
+ M +V+DK+ V P + AL + K + G SL+ + S
Sbjct: 329 MFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGE 388
Query: 334 PANSKIIEDFVGAF--PHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAP-----N 386
P N + E + + + TE T GF + +
Sbjct: 389 PINPEAWEWYWKKIGKEKCPVVDTWWQTE-----TGGFMITPLPGAIELKAGSATRPFFG 443
Query: 387 IQAKVVDWVNGCFLPPGST-GELWLRG--PGTMKEYINNADATMSTIDKEGWLHTGDIAY 443
+Q +VD N G+T G L + PG + + + T + T Y
Sbjct: 444 VQPALVD--NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQT-----YFSTFKNMY 496
Query: 444 FDED-------GYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLG 496
F D GY +I R+ +V+ +G+++ A++E+ L+ HP+I + AV G + G
Sbjct: 497 FSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKG 556
Query: 497 EIPVAFVVRRDGSTLTE---AAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553
+ A+V G + A V +++A+ + P + +T S+PK+ +GK++RR LR
Sbjct: 557 QAIYAYVTLNHGEEPSPELYAEVRNWVAKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
Query: 554 KF 555
K
Sbjct: 617 KI 618
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 129/601 (21%), Positives = 233/601 (38%), Gaps = 71/601 (11%)
Query: 7 TFSSERINTSQWYSPETGIYHSKHPSVNLPA---NDSLLDVDSFIFSH--KHNG-RTALV 60
TF E+ W +P + ++ N+ D L++ + + NG RTA++
Sbjct: 37 TFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAII 96
Query: 61 ----DSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYL 116
D+ ISY +L V A+ L GI +GD V + +P V LA +
Sbjct: 97 WEGDDTSQSKHISYRELHRDVCRFANTLLD-LGIKKGDVVAIYMPMVPEAAVAMLACARI 155
Query: 117 GAIVIPMNPLLSVSEIKKQVTLCKTKISL----------AFTIYENVDKLRSWGTTPVVA 166
GA+ + S + ++ +++ + + + +NVD P V
Sbjct: 156 GAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALK---NPNVT 212
Query: 167 VPENLVN--------DFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASK 218
E+++ D++EGR + LI + + +D ILY+SG+TG K
Sbjct: 213 SVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPK 272
Query: 219 GAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMF---HIYXXXXXXXXXXXXXX 275
G T G ++ ++ ++Y + + + H Y
Sbjct: 273 GVLHTTGGYLVYAATTFKY---VFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLM 329
Query: 276 XXXXMRRFEASEMLKVIDKYGVTHFPVVPPILMAL-TKAAKGLCGNSLKSLKQVSSGAAP 334
+ M +V+DK+ V P + AL + K + G SL+ + S P
Sbjct: 330 FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSAGEP 389
Query: 335 ANSKIIEDFVGAF--PHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAP-----NI 387
N + E + + + TE T GF + + +
Sbjct: 390 INPEAWEWYWKKIGKEKCPVVDTWWQTE-----TGGFMITPLPGAIELKAGSATRPFFGV 444
Query: 388 QAKVVDWVNGCFLPPGST-GELWLRG--PGTMKEYINNADATMSTIDKEGWLHTGDIAYF 444
Q +VD N G+T G L + PG + + + T + T YF
Sbjct: 445 QPALVD--NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQT-----YFSTFKNMYF 497
Query: 445 DED-------GYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGE 497
D GY +I R+ +V+ +G+++ A++E+ L+ HP+I + AV G + G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 498 IPVAFVVRRDGSTLTE---AAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554
A+V G + A V +++ + + P + +T S+PK+ +GK++RR LRK
Sbjct: 558 AIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRK 617
Query: 555 F 555
Sbjct: 618 I 618
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 129/602 (21%), Positives = 233/602 (38%), Gaps = 71/602 (11%)
Query: 6 QTFSSERINTSQWYSPETGIYHSKHPSVNLPA---NDSLLDVDSFIFSH--KHNG-RTAL 59
TF E+ W +P + ++ N+ D L++ + + NG RTA+
Sbjct: 36 DTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAI 95
Query: 60 V----DSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLY 115
+ D+ ISY +L V A+ L GI +GD V + +P V LA
Sbjct: 96 IWEGDDTSQSKHISYRELHRDVCRFANTLLD-LGIKKGDVVAIYMPMVPEAAVAMLACAR 154
Query: 116 LGAIVIPMNPLLSVSEIKKQVTLCKTKISL----------AFTIYENVDKLRSWGTTPVV 165
+GA+ + S + ++ +++ + + + +NVD P V
Sbjct: 155 IGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALK---NPNV 211
Query: 166 AVPENLVN--------DFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGAS 217
E+++ D++EGR + LI + + +D ILY+SG+TG
Sbjct: 212 TSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKP 271
Query: 218 KGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMF---HIYXXXXXXXXXXXXX 274
KG T G ++ ++ ++Y + + + H Y
Sbjct: 272 KGVLHTTGGYLVYAATTFKY---VFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTL 328
Query: 275 XXXXXMRRFEASEMLKVIDKYGVTHFPVVPPILMAL-TKAAKGLCGNSLKSLKQVSSGAA 333
+ M +V+DK+ V P + AL + K + G SL+ + S
Sbjct: 329 MFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGE 388
Query: 334 PANSKIIEDFVGAF--PHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAP-----N 386
P N + E + + + TE T GF + +
Sbjct: 389 PINPEAWEWYWKKIGKEKCPVVDTWWQTE-----TGGFMITPLPGAIELKAGSATRPFFG 443
Query: 387 IQAKVVDWVNGCFLPPGST-GELWLRG--PGTMKEYINNADATMSTIDKEGWLHTGDIAY 443
+Q +VD N G+T G L + PG + + + T + T Y
Sbjct: 444 VQPALVD--NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQT-----YFSTFKNMY 496
Query: 444 FDED-------GYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLG 496
F D GY +I R+ +V+ +G+++ A++E+ L+ HP+I + AV G + G
Sbjct: 497 FSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKG 556
Query: 497 EIPVAFVVRRDGSTLTE---AAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553
+ A+V G + A V +++ + + P + +T S+PK+ +GK++RR LR
Sbjct: 557 QAIYAYVTLNHGEEPSPELYAEVRNWVEKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
Query: 554 KF 555
K
Sbjct: 617 KI 618
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 129/602 (21%), Positives = 233/602 (38%), Gaps = 71/602 (11%)
Query: 6 QTFSSERINTSQWYSPETGIYHSKHPSVNLPA---NDSLLDVDSFIFSH--KHNG-RTAL 59
TF E+ W +P + ++ N+ D L++ + + NG RTA+
Sbjct: 36 DTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAI 95
Query: 60 V----DSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLY 115
+ D+ ISY +L V A+ L GI +GD V + +P V LA
Sbjct: 96 IWEGDDTSQSKHISYRELHRDVCRFANTLLD-LGIKKGDVVAIYMPMVPEAAVAMLACAR 154
Query: 116 LGAIVIPMNPLLSVSEIKKQVTLCKTKISL----------AFTIYENVDKLRSWGTTPVV 165
+GA+ + S + ++ +++ + + + +NVD P V
Sbjct: 155 IGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGASIPLKKNVDDALK---NPNV 211
Query: 166 AVPENLVN--------DFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGAS 217
E+++ D++EGR + LI + + +D ILY+SG+TG
Sbjct: 212 TSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKP 271
Query: 218 KGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMF---HIYXXXXXXXXXXXXX 274
KG T G ++ ++ ++Y + + + H Y
Sbjct: 272 KGVLHTTGGYLVYAATTFKY---VFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTL 328
Query: 275 XXXXXMRRFEASEMLKVIDKYGVTHFPVVPPILMAL-TKAAKGLCGNSLKSLKQVSSGAA 333
+ M +V+DK+ V P + AL + K + G SL+ + S
Sbjct: 329 MFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGE 388
Query: 334 PANSKIIEDFVGAF--PHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAP-----N 386
P N + E + + + TE T GF + +
Sbjct: 389 PINPEAWEWYWKKIGKEKCPVVDTWWQTE-----TGGFMITPLPGAIELKAGSATRPFFG 443
Query: 387 IQAKVVDWVNGCFLPPGST-GELWLRG--PGTMKEYINNADATMSTIDKEGWLHTGDIAY 443
+Q +VD N G+T G L + PG + + + T + T Y
Sbjct: 444 VQPALVD--NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQT-----YFSTFKNMY 496
Query: 444 FDED-------GYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLG 496
F D GY +I R+ +V+ +G+++ A++E+ L+ HP+I + AV G + G
Sbjct: 497 FSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKG 556
Query: 497 EIPVAFVVRRDGSTLTE---AAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553
+ A+V G + A V +++ + + P + +T S+PK+ +GK++RR LR
Sbjct: 557 QAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
Query: 554 KF 555
K
Sbjct: 617 KI 618
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 129/601 (21%), Positives = 233/601 (38%), Gaps = 71/601 (11%)
Query: 7 TFSSERINTSQWYSPETGIYHSKHPSVNLPA---NDSLLDVDSFIFSH--KHNG-RTALV 60
TF E+ W +P + ++ N+ D L++ + + NG RTA++
Sbjct: 37 TFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAII 96
Query: 61 ----DSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYL 116
D+ ISY +L V A+ L GI +GD V + +P V LA +
Sbjct: 97 WEGDDTSQSKHISYRELHRDVCRFANTLLD-LGIKKGDVVAIYMPMVPEAAVAMLACARI 155
Query: 117 GAIVIPMNPLLSVSEIKKQVTLCKTKISL----------AFTIYENVDKLRSWGTTPVVA 166
GA+ + S + ++ +++ + + + +NVD P V
Sbjct: 156 GAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALK---NPNVT 212
Query: 167 VPENLVN--------DFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASK 218
E+++ D++EGR + LI + + +D ILY+SG+TG K
Sbjct: 213 SVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPK 272
Query: 219 GAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMF---HIYXXXXXXXXXXXXXX 275
G T G ++ ++ ++Y + + + H Y
Sbjct: 273 GVLHTTGGYLVYAATTFKY---VFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLM 329
Query: 276 XXXXMRRFEASEMLKVIDKYGVTHFPVVPPILMAL-TKAAKGLCGNSLKSLKQVSSGAAP 334
+ M +V+DK+ V P + AL + K + G SL+ + S P
Sbjct: 330 FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEP 389
Query: 335 ANSKIIEDFVGAF--PHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAP-----NI 387
N + E + + + TE T GF + + +
Sbjct: 390 INPEAWEWYWKKIGKEKCPVVDTWWQTE-----TGGFMITPLPGAIELKAGSATRPFFGV 444
Query: 388 QAKVVDWVNGCFLPPGST-GELWLRG--PGTMKEYINNADATMSTIDKEGWLHTGDIAYF 444
Q +VD N G+T G L + PG + + + T + T YF
Sbjct: 445 QPALVD--NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQT-----YFSTFKNMYF 497
Query: 445 DED-------GYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGE 497
D GY +I R+ +V+ +G+++ A++E+ L+ HP+I + AV G + G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 498 IPVAFVVRRDGSTLTE---AAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRK 554
A+V G + A V +++ + + P + +T S+PK+ +GK++RR LRK
Sbjct: 558 AIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRK 617
Query: 555 F 555
Sbjct: 618 I 618
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 129/602 (21%), Positives = 232/602 (38%), Gaps = 71/602 (11%)
Query: 6 QTFSSERINTSQWYSPETGIYHSKHPSVNLPA---NDSLLDVDSFIFSH--KHNG-RTAL 59
TF E+ W +P + ++ N+ D L++ + + NG RTA+
Sbjct: 36 DTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAI 95
Query: 60 V----DSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLY 115
+ D+ ISY +L V A+ L GI +GD V + +P V LA
Sbjct: 96 IWEGDDTSQSKHISYRELHRDVCRFANTLLD-LGIKKGDVVAIYMPMVPEAAVAMLACAR 154
Query: 116 LGAIVIPMNPLLSVSEIKKQVTLCKTKISL----------AFTIYENVDKLRSWGTTPVV 165
+GA+ + S + + +++ + + + +NVD P V
Sbjct: 155 IGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALK---NPNV 211
Query: 166 AVPENLVN--------DFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGAS 217
E+++ D++EGR + LI + + +D ILY+SG+TG
Sbjct: 212 TSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKP 271
Query: 218 KGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMF---HIYXXXXXXXXXXXXX 274
KG T G ++ ++ ++Y + + + H Y
Sbjct: 272 KGVLHTTGGYLVYAATTFKY---VFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTL 328
Query: 275 XXXXXMRRFEASEMLKVIDKYGVTHFPVVPPILMAL-TKAAKGLCGNSLKSLKQVSSGAA 333
+ M +V+DK+ V P + AL + K + G SL+ + S
Sbjct: 329 MFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGE 388
Query: 334 PANSKIIEDFVGAF--PHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAP-----N 386
P N + E + + + TE T GF + +
Sbjct: 389 PINPEAWEWYWKKIGKEKCPVVDTWWQTE-----TGGFMITPLPGAIELKAGSATRPFFG 443
Query: 387 IQAKVVDWVNGCFLPPGST-GELWLRG--PGTMKEYINNADATMSTIDKEGWLHTGDIAY 443
+Q +VD N G+T G L + PG + + + T + T Y
Sbjct: 444 VQPALVD--NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQT-----YFSTFKNMY 496
Query: 444 FDED-------GYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLG 496
F D GY +I R+ +V+ +G+++ A++E+ L+ HP+I + AV G + G
Sbjct: 497 FSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKG 556
Query: 497 EIPVAFVVRRDGSTLTE---AAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553
+ A+V G + A V +++ + + P + +T S+PK+ +GK++RR LR
Sbjct: 557 QAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
Query: 554 KF 555
K
Sbjct: 617 KI 618
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 119/507 (23%), Positives = 188/507 (37%), Gaps = 48/507 (9%)
Query: 62 SLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVI 121
+ SG ++SY +L +A L+ H G +G V L S+ + L +L GA +
Sbjct: 484 TYSGQTLSYRELDEEANRIARRLQKH-GAGKGSVVALYTKRSLELVIGILGVLKAGAAYL 542
Query: 122 PMNPLLSVSEIKKQVTLCKTKISLAFT-IYENVDKLRSWGTTPVVAVPENLVNDFKEGRF 180
P++P L I + L + E +L GTT ++D + RF
Sbjct: 543 PVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTL-------FIDD--QTRF 593
Query: 181 SDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEAS 240
+ A D D A I+Y+SGTTG KG TH N V+
Sbjct: 594 EEQASDPATAID--------PNDPAYIMYTSGTTGKPKGNITTHANIQGLVKHV------ 639
Query: 241 QYEYLSSEAVFLAVLP------MFHIYXXXXXXXXXXXXXXXXXXMRRFEASEMLKVIDK 294
Y S + FL+V F Y + + +I +
Sbjct: 640 DYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTL----LDTERLTDLILQ 695
Query: 295 YGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQ 354
V + LT A + + +K L+ + G A+ + + I
Sbjct: 696 ENVNVMFATTALFNLLTDAGE----DWMKGLRCILFGGERASVPHVRKALRIMGPGKLIN 751
Query: 355 GYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPP-GSTGELWLRGP 413
YG TE T T S+ + P A V L P G+ GEL + G
Sbjct: 752 CYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGM 811
Query: 414 GTMKEYINNADATMSTIDK------EGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQI 467
G K Y+N AD T + E TGD+A + DG + R+ + +K G++I
Sbjct: 812 GVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRI 871
Query: 468 SPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPY 527
++E L +P + D V + A++V R + L+ V +L +++ Y
Sbjct: 872 ELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNR--TQLSAEDVKAHLKKQLPAY 929
Query: 528 KKVRRVVFTKSIPKSAAGKVLRRELRK 554
+ F +P + GKV +R L K
Sbjct: 930 MVPQTFTFLDELPLTTNGKVNKRLLPK 956
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 128/602 (21%), Positives = 232/602 (38%), Gaps = 71/602 (11%)
Query: 6 QTFSSERINTSQWYSPETGIYHSKHPSVNLPA---NDSLLDVDSFIFSH--KHNG-RTAL 59
TF E+ W +P + ++ N+ D L++ + + NG RTA+
Sbjct: 36 DTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAI 95
Query: 60 V----DSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLY 115
+ D+ ISY +L V A+ L GI +GD V + +P V LA
Sbjct: 96 IWEGDDTSQSKHISYRELHRDVCRFANTLLD-LGIKKGDVVAIYMPMVPEAAVAMLACAR 154
Query: 116 LGAIVIPMNPLLSVSEIKKQVTLCKTKISL----------AFTIYENVDKLRSWGTTPVV 165
+GA+ + S + ++ +++ + + + +NVD P V
Sbjct: 155 IGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALK---NPNV 211
Query: 166 AVPENLVN--------DFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGAS 217
E+++ D++EGR + LI + + +D ILY+SG+TG
Sbjct: 212 TSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKP 271
Query: 218 KGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMF---HIYXXXXXXXXXXXXX 274
KG T G ++ ++ ++Y + + + H Y
Sbjct: 272 KGVLHTTGGYLVYAATTFKY---VFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTL 328
Query: 275 XXXXXMRRFEASEMLKVIDKYGVTHFPVVPPILMAL-TKAAKGLCGNSLKSLKQVSSGAA 333
+ M +V+DK+ V P + AL + K + G SL+ + S
Sbjct: 329 MFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGE 388
Query: 334 PANSKIIEDFVGAF--PHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAP-----N 386
P N + E + + + TE T GF + +
Sbjct: 389 PINPEAWEWYWKKIGKEKCPVVDTWWQTE-----TGGFMITPLPGAIELKAGSATRPFFG 443
Query: 387 IQAKVVDWVNGCFLPPGST-GELWLRG--PGTMKEYINNADATMSTIDKEGWLHTGDIAY 443
+Q +VD N G+T G L + PG + + + T + T Y
Sbjct: 444 VQPALVD--NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQT-----YFSTFKNMY 496
Query: 444 FDED-------GYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLG 496
F D GY +I R+ +V+ +G+++ A++E+ L+ HP+I + AV G + G
Sbjct: 497 FSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKG 556
Query: 497 EIPVAFVVRRDGSTLTE---AAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELR 553
+ A+V G + A V +++ + + P + +T S+PK+ +G ++RR LR
Sbjct: 557 QAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGAIMRRILR 616
Query: 554 KF 555
K
Sbjct: 617 KI 618
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 130/511 (25%), Positives = 205/511 (40%), Gaps = 48/511 (9%)
Query: 56 RTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLY 115
RTAL S ISY +L +VA L G+ GD V L + V LA+L
Sbjct: 51 RTAL--SAEDDRISYGRLDAWSDAVARTLLAE-GVRPGDRVALRMSPGAEAIVAILAILK 107
Query: 116 LGAIVIPMNPLLSVSEIKKQVTLCKTKIS-LAFTIYENVDKLRSWGTTPVVAVPENLVND 174
GA +P++ VS + L + S L +E R T V D
Sbjct: 108 CGAAYVPVDLRNPVS--RSDFILADSGASALIGEPHEGCAVTRVVRTAAVAEC-----KD 160
Query: 175 FKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELF 234
+ G + P +D A ++Y+SGTTG KG + H N +A
Sbjct: 161 AEPGPVTGA-------------PGPGAEDMAYVIYTSGTTGNPKGVPVRHANVLA----L 203
Query: 235 VRFEASQYEYLSSEA--VFLAVLPMFHIYXXXXXXXXXXXXXXXXXXMRRFEASEMLKVI 292
+ S +++ + +F ++ F ++ R + +I
Sbjct: 204 LAGAPSVFDFSGDDRWLLFHSLSFDFSVWEIWGAFSTGAELVVLPHWAARTPEQYLAVII 263
Query: 293 DKYGVTHFPVVPPILMALTKAA-KGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAF--PH 349
D+ GVT P +ALT+AA +G G + L+ V G + ++ + AF
Sbjct: 264 DR-GVTVINQTPTAFLALTEAAVRG--GRDVSGLRYVIFGGEKLTAPMLRPWAKAFGLDR 320
Query: 350 VDFIQGYGMTESTAVGTRGFNTKKFSKYFS--VGLLAPNIQAKVVDWVNGCFLPPGSTGE 407
+ GYG+TE+T T T+ + + +G P+ +VV +G + PG TGE
Sbjct: 321 PRLVNGYGITETTVFTTFEEITEAYLAQDASIIGRALPSFGTRVVG-DDGRDVAPGETGE 379
Query: 408 LWLRGPGTMKEYINNADATMS-----TIDKEG----WLHTGDIAYFDEDGYLYIVDRLKE 458
LWL G + Y+ + T T +K G + TGD+ DG R
Sbjct: 380 LWLSGAQLAEGYLRRPELTAEKFPEVTDEKTGESVRYYRTGDLVSELPDGRFAYEGRADL 439
Query: 459 VIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVID 518
IK GY+I +D+ET + H +++D VT K V V R+GS T + +
Sbjct: 440 QIKLRGYRIELSDIETAVRRHDDVVDAVVTVREFKPGDLRLVCAYVAREGSATTARELRN 499
Query: 519 YLAQRVAPYKKVRRVVFTKSIPKSAAGKVLR 549
++ + Y R + +P++ GKV R
Sbjct: 500 HIKTLLPAYMHPARYLPLPGLPRTVNGKVDR 530
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 133/590 (22%), Positives = 220/590 (37%), Gaps = 103/590 (17%)
Query: 40 SLLDVDSFIFSHKHNGRTA-LVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLL 98
SL+DV H N ++ ++ + +Y QL +++A+ L+ G GD VLL
Sbjct: 12 SLVDVVRLRALHSPNKKSCTFLNKELEETXTYEQLDQHAKAIAATLQAE-GAKPGDRVLL 70
Query: 99 LLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKK-QVTLCKTKISLAFTIYENVDKLR 157
L + FL LY G I +P+ P + K Q + +K + I +++ K
Sbjct: 71 LFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLXIADHIKKFT 130
Query: 158 S--WGTTP-VVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTT 214
+ T P + +P + + R S + + I+ D A + Y+SG+T
Sbjct: 131 ADELNTNPKFLKIPAIALESIELNRSSSW-----------QPTSIKSNDIAFLQYTSGST 179
Query: 215 GASKGAELTHGNFIAAV-ELFVRFEASQYEYLSSEAVFLAVLPMFHIYXXXXXXXXXXXX 273
KG ++H N + + ++F F + + E + + LP H
Sbjct: 180 XHPKGVXVSHHNLLDNLNKIFTSF------HXNDETIIFSWLPPHHDXGLIGCILTPIYG 233
Query: 274 XXXXXXMRRFEASE----MLKVIDKYGVT-----HFPVVPPILMALTKAAKGLCGNSLKS 324
F + LK I KY T +F + + +GL L S
Sbjct: 234 GIQAIXXSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGL---DLSS 290
Query: 325 LKQVSSGAAPANSKIIEDFVGAFPHVDFIQ-----GYGMTESTAV---GTRGFNTKKFS- 375
+GA P + E F AF F + YG+ E+T + GT G + K +
Sbjct: 291 WVTAFNGAEPVREETXEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTL 350
Query: 376 -------------------KYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTM 416
Y V P + K++D GE+W++
Sbjct: 351 AKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPCDFDQVGEIWVQSNSVA 410
Query: 417 KEYINNADATMSTI-----DKEG---WLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQIS 468
K Y N + T D E +L TGD+ + E+ LY+ R+K++I G
Sbjct: 411 KGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENE-LYVTGRIKDLIIIYGKNHY 469
Query: 469 PADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGS-TLT-EAAVIDYLAQRVAP 526
P D+E L P + VLG+ AFV++ + LT V + VA
Sbjct: 470 PQDIEFSLXHSP----------LHHVLGKC-AAFVIQEEHEYKLTVXCEVKNRFXDDVAQ 518
Query: 527 ---YKKVRRVVFT--------------KSIPKSAAGKVLRRELRKFLTSK 559
+ ++ +V+ K+ P + +GK+ R RK L K
Sbjct: 519 DNLFNEIFELVYENHQLEVHTIVLIPLKAXPHTTSGKIRRNFCRKHLLDK 568
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 83/372 (22%), Positives = 143/372 (38%), Gaps = 41/372 (11%)
Query: 202 QDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPM-FHI 260
+D A ++++SG+TG KG H + Y + VFL P+ +
Sbjct: 214 EDVACVMFTSGSTGRPKGVMSPHRALTGT------YLGQDYAGFGPDEVFLQCSPVSWDA 267
Query: 261 YXXXXXXXXXXXXXXXXXXMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGN 320
+ + + E+ +++ ++GVT + + L
Sbjct: 268 FGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP----E 323
Query: 321 SLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKF------ 374
+ + ++ +G PA+ + P + GYG ES GF T
Sbjct: 324 AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESM-----GFTTHHAVVAGDL 378
Query: 375 -SKYFSVGLLAPNIQAKVVDWVNGCFLPP---GSTGELWLRGPGTMKEYINNADATMSTI 430
+G+ +A V+D L P G+ GEL++ G G Y++ T
Sbjct: 379 SGTALPIGVPLAGKRAYVLD----DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERF 434
Query: 431 --------DKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEI 482
E TGD+A DG L V R + +K G+++ P ++E L+ HP +
Sbjct: 435 VADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAV 494
Query: 483 LDVAVTGAMDKVLGEIP-VAFVVRRDGSTLTEAAVI-DYLAQRVAPYKKVRRVVFTKSIP 540
AV A D LG+ VA+VV +AA + ++A+ + Y V +P
Sbjct: 495 RQAAVL-AQDSRLGDKQLVAYVVAERADAPPDAAELRRHVAEALPAYMVPVECVPVDELP 553
Query: 541 KSAAGKVLRREL 552
++ GK+ RR L
Sbjct: 554 RTPNGKLDRRAL 565
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 118/518 (22%), Positives = 188/518 (36%), Gaps = 78/518 (15%)
Query: 88 FGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSE-----IKKQVTLCKTK 142
+ +GD V L+ S F F A Y G + +P+ V + K Q L +
Sbjct: 68 LNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPXGVGQRDSWSAKLQGLLASCQ 127
Query: 143 ISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQ 202
+ T E W P+V + + + F L L +RPV
Sbjct: 128 PAAIITGDE-------W--LPLVNAATHDNPELHVLSHAWFKALPEADVAL-QRPV--PN 175
Query: 203 DTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYE--YLSSEAVFLAVLPMFHI 260
D A + Y+SG+T +G +TH E+ A ++ L ++ LP +H
Sbjct: 176 DIAYLQYTSGSTRFPRGVIITH------REVXANLRAISHDGIKLRPGDRCVSWLPFYHD 229
Query: 261 YXXXXXXXXXXXXXXXXXXMRRFEAS----EMLKVIDKYGVTHFPVVPPILMALTKA--- 313
+R + + + LK+I K T V PP L +
Sbjct: 230 XGLVGFLLTPVATQLSVDYLRTQDFAXRPLQWLKLISKNRGT-VSVAPPFGYELCQRRVN 288
Query: 314 AKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQ-----GYGMTEST------ 362
K L L + GA P +++ + F F V+F YG+ E+
Sbjct: 289 EKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFXPCYGLAENALAVSFS 348
Query: 363 --AVG------------------TRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPP 402
A G G T+ S + + G P ++ + G +
Sbjct: 349 DEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRNEA-GXPVAE 407
Query: 403 GSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKY 462
G + + GP Y + + I GWL TGD+ Y DGYLY+ R+K++I
Sbjct: 408 RVVGHICISGPSLXSGYFGD-QVSQDEIAATGWLDTGDLGYL-LDGYLYVTGRIKDLIII 465
Query: 463 NGYQISPADLETVLICHPEILD---VAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDY 519
G I P D+E + PEI +A A +K++ +I R +I
Sbjct: 466 RGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQEKIILQIQC-----RISDEERRGQLIHA 520
Query: 520 LAQRVAPYKKVRRVVF---TKSIPKSAAGKVLRRELRK 554
LA R+ V + SIP++++GK R E +K
Sbjct: 521 LAARIQSEFGVTAAIDLLPPHSIPRTSSGKPARAEAKK 558
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 96/219 (43%), Gaps = 23/219 (10%)
Query: 347 FPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFS---VGLLAPNIQAKVVDWVNGCFLPPG 403
FP I YG TE+T + T++ ++ +G P+ ++D +G L G
Sbjct: 288 FPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDE-DGKELSSG 346
Query: 404 STGELWLRGPGTMKEYINNADATMS---TIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVI 460
GE+ + GP K Y+NN + T T + HTGDI ED L RL I
Sbjct: 347 EQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQI 406
Query: 461 KYNGYQISPADLETVLICHPEILD-VAVTGAMDKVLGEIPVAFVVRRDG----------- 508
KY GY+I D+ L P + VAV + + +A++V +DG
Sbjct: 407 KYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELEL 466
Query: 509 STLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKV 547
+ +A+V D++ + P K + R S+P + GK+
Sbjct: 467 TKAIKASVKDHMMSYMMPSKFLYR----DSLPLTPNGKI 501
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 199 IRQQDTAAILYSSGTTGASKGAELTHGNFIA 229
++ D I+++SGTTG KG +++H N ++
Sbjct: 142 VKGDDNYYIIFTSGTTGQPKGVQISHDNLLS 172
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 80/372 (21%), Positives = 152/372 (40%), Gaps = 20/372 (5%)
Query: 199 IRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVR-FEASQYEYLSSEAVFLAVLPM 257
++ + I+Y+SG+TG KG ++T+ ++ + V F + ++A F L +
Sbjct: 141 VKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSV 200
Query: 258 FHIYXXXXXXXXXXXXXXXXXXMRRFEASEMLKVIDKYGVTHFPVVPPIL-MALTKAAKG 316
IY + ++ +++ + + P M L +A+
Sbjct: 201 MDIYPSLVTGGTLWAIDKDMIARPK----DLFASLEQSDIQVWTSTPSFAEMCLMEAS-- 254
Query: 317 LCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKF-- 374
+ L ++K +++ + FP + YG TE+T T T++
Sbjct: 255 FSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLD 314
Query: 375 -SKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADAT---MSTI 430
K VG + + ++ +G P G GE+ + GP Y+ + + T + I
Sbjct: 315 QYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMI 373
Query: 431 DKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGA 490
D E TGD Y E+G L+ RL IK +GY++ ++E L + +
Sbjct: 374 DGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPI 432
Query: 491 MDKVLGEIPVAFVVRRDGSTLTE----AAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGK 546
+ +A VV + S E +A+ L +R+ Y R+ ++ SIP + GK
Sbjct: 433 KKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGK 492
Query: 547 VLRRELRKFLTS 558
V R++L +T+
Sbjct: 493 VDRKKLLSEVTA 504
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 80/372 (21%), Positives = 152/372 (40%), Gaps = 20/372 (5%)
Query: 199 IRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVR-FEASQYEYLSSEAVFLAVLPM 257
++ + I+Y+SG+TG KG ++T+ ++ + V F + ++A F L +
Sbjct: 141 VKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSV 200
Query: 258 FHIYXXXXXXXXXXXXXXXXXXMRRFEASEMLKVIDKYGVTHFPVVPPIL-MALTKAAKG 316
IY + ++ +++ + + P M L +A+
Sbjct: 201 MDIYPSLVTGGTLWAIDKDMIARPK----DLFASLEQSDIQVWTSTPSFAEMCLMEAS-- 254
Query: 317 LCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKF-- 374
+ L ++K +++ + FP + YG TE+T T T++
Sbjct: 255 FSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLD 314
Query: 375 -SKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADAT---MSTI 430
K VG + + ++ +G P G GE+ + GP Y+ + + T + I
Sbjct: 315 QYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMI 373
Query: 431 DKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGA 490
D E TGD Y E+G L+ RL IK +GY++ ++E L + +
Sbjct: 374 DGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPI 432
Query: 491 MDKVLGEIPVAFVVRRDGSTLTE----AAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGK 546
+ +A VV + S E +A+ L +R+ Y R+ ++ SIP + GK
Sbjct: 433 KKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGK 492
Query: 547 VLRRELRKFLTS 558
V R++L +T+
Sbjct: 493 VDRKKLLSEVTA 504
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 89/376 (23%), Positives = 157/376 (41%), Gaps = 55/376 (14%)
Query: 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEAS----------QYEYLSSEA 249
+ D A ++Y+SGTTG KG L H I+ +++F FE S Q+ +S +A
Sbjct: 180 KSTDLAYVIYTSGTTGNPKGTMLEHKG-ISNLKVF--FENSLNVTEKDRIGQFASISFDA 236
Query: 250 ----VFLAVLPMFHIYXXXXXXXXXXXXXXXXXXMRRFEASEMLKVIDKYGVTHFPVVPP 305
+F+A+L +Y +FE + I++ +T +PP
Sbjct: 237 SVWEMFMALLTGASLYIILKDTINDFV---------KFE-----QYINQKEITVI-TLPP 281
Query: 306 ILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPH-VDFIQGYGMTESTAV 364
+ + L S+++L S +P+ V + V +I YG TE+T
Sbjct: 282 TYVVHLDPERIL---SIQTLITAGSATSPS-------LVNKWKEKVTYINAYGPTETTIC 331
Query: 365 GTRGFNTKKFSKYFSVGLLAP--NIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINN 422
T TK+ + SV + AP N Q +VD N G GEL + G G + Y
Sbjct: 332 ATTWVATKETIGH-SVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKR 389
Query: 423 ADATMST------IDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVL 476
+ T + E TGD A + DG + + R+ +K G+++ ++E++L
Sbjct: 390 PELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESIL 449
Query: 477 ICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFT 536
+ H I + AV+ D A+ V L + + + ++ + Y +
Sbjct: 450 LKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQ--LRQFSSEELPTYMIPSYFIQL 507
Query: 537 KSIPKSAAGKVLRREL 552
+P ++ GK+ R++L
Sbjct: 508 DKMPLTSNGKIDRKQL 523
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 82/378 (21%), Positives = 139/378 (36%), Gaps = 29/378 (7%)
Query: 194 VERPVIRQQDTAAILYSSGTTGASKGAELTHGNF--IAAVELFVRFEASQYEYLSSEAVF 251
V RP A I +SSGTTG K TH + + F+ F A Q +L + +
Sbjct: 156 VARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLGQSFLAF-APQMRFLVNSPL- 213
Query: 252 LAVLPMFHIYXXXXXXXXXXXXXXXXXXMRRFEASEMLKVIDKYGVTHFPVVPPILMALT 311
F + + + ++I + G + + L
Sbjct: 214 -----SFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLV 268
Query: 312 KAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNT 371
L + L L+Q+ +G + + + P + + GYG TE+T T
Sbjct: 269 D----LDPDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVT 324
Query: 372 KK--FSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMST 429
+G ++D P GE+ G G + Y N+A T ++
Sbjct: 325 DDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRAS 384
Query: 430 ---IDKEGWL----HTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEI 482
+ G L TGD A +DE G L + R +K NGY++ LE P I
Sbjct: 385 FVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGI 444
Query: 483 LDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKS 542
LD A+ + ++ A+ + D S L +++ +++ V +++P +
Sbjct: 445 LDCALLVRERNGVKQLLCAWTGKADASP-------QALLRQLPTWQRPHACVRVEALPLT 497
Query: 543 AAGKVLRRELRKFLTSKL 560
A GK+ R L + L L
Sbjct: 498 AHGKLDRAALLRRLEEPL 515
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/369 (20%), Positives = 142/369 (38%), Gaps = 26/369 (7%)
Query: 199 IRQQDTAAILYSSGTTGASKGAELTHGNFIAAVE-LFVRFEASQYEYLSSEAVFLAVLPM 257
+++ +T I+Y+SG+TG KG +++ N + + + F S + ++A F L +
Sbjct: 140 VKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSV 199
Query: 258 FHIYXXXXXXXXXXXXXXXXXXMRRFEASEMLKVIDKYGVTHFPVVPP-ILMALTKAAKG 316
+Y + + + + K G+ + P + M L G
Sbjct: 200 MDLYPCLQSGGTLHCVTKDAVNKPKV----LFEELKKSGLNVWTSTPSFVQMCLMDP--G 253
Query: 317 LCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKF-- 374
+ L + + + FP YG TE+T T T
Sbjct: 254 FSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVIS 313
Query: 375 -SKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKE 433
S+ VG P++ ++D G LP G GE+ + GP + Y+ + T +K
Sbjct: 314 RSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRGYLGEPELT----EKA 368
Query: 434 GWLHTGDIAY------FDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAV 487
+ H G AY F +DG ++ RL IK +GY++ ++E + + V
Sbjct: 369 FFSHEGQWAYRTGDAGFIQDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVV 428
Query: 488 TGAMDKVLGEIPVAFVVRRDGSTLTE----AAVIDYLAQRVAPYKKVRRVVFTKSIPKSA 543
E +A +V + E +A+ LA + Y R+ ++ I +A
Sbjct: 429 IPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTA 488
Query: 544 AGKVLRREL 552
GK+ R+ +
Sbjct: 489 NGKIDRKRI 497
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 92/440 (20%), Positives = 154/440 (35%), Gaps = 68/440 (15%)
Query: 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMN-P 125
++++ QL+ +VA L S GD V++ P + + V FL L G I +P++ P
Sbjct: 58 TLTWSQLYRRTLNVAQELSRCG--STGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVP 115
Query: 126 LLSVSEIKKQVTLCKTKISLAFTIYENVDKL-----RSWGTTPVVAVPENLVNDFKEGRF 180
V++ + L + T VD + R G +P + +L+
Sbjct: 116 QGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLL-------- 167
Query: 181 SDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVE-LFVRFEA 239
D F E P TA + Y+SG+T G ++H N E L + A
Sbjct: 168 -DLDAPNGYTFKEDEYP-----STAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFA 221
Query: 240 SQYEYLSSEAVFLAVLPMFHIYXXXXXXXX------XXXXXXXXXXMRRFEASEMLKVID 293
+ ++ LP +H ++R L D
Sbjct: 222 DTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASD 281
Query: 294 KYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFI 353
+ + P L A + G L ++ + SG+ + I+ F F +
Sbjct: 282 FHAFSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQ 341
Query: 354 Q-----GYGMTESTAV----------GTRGFNTKKFS----KYFSVG--------LLAPN 386
+ Y + E+T T F+T+ S K + G +L +
Sbjct: 342 ERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS 401
Query: 387 IQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTID----------KEG-W 435
++VD P G+ GE+W+ G Y D + T EG W
Sbjct: 402 PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPW 461
Query: 436 LHTGDIAYFDEDGYLYIVDR 455
L TGD + F DG ++I+ R
Sbjct: 462 LRTGD-SGFVTDGKMFIIGR 480
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 90/407 (22%), Positives = 140/407 (34%), Gaps = 38/407 (9%)
Query: 92 QGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYE 151
G A+ + L S+ I + + G +P+ L +K L ++ + AF
Sbjct: 78 HGRAIAVSLDRSLIAFAIIVGIXKSGNTYVPIEAGLP--NDRKSFLLRDSRAAXAFVCDN 135
Query: 152 NVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSS 211
N D V PE V D K F + L P + A +LY+S
Sbjct: 136 NFDG--------VELPPETKVLDTKNQSFIENLSTQDTSDILNNYP---ENLDAYLLYTS 184
Query: 212 GTTGASKGAELTHGN---FIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYXXXXXXX 268
G+TG KG ++ N F A + A + L FL +
Sbjct: 185 GSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEXFL 244
Query: 269 XXXXXXXXXXXMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQV 328
R ++ + + GVTH +VP +L GL L +
Sbjct: 245 AWRFGLCAVTGERLSXLDDLPRTFRELGVTHAGIVPSLL-----DQTGLVPEDAPHLVYL 299
Query: 329 SSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQ 388
G + + + V + YG TE T +G S +G +
Sbjct: 300 GVGGEKXTPRT-QQIWSSSDRVALVNVYGPTEVT-IGCSAGRILPDSDTRCIGHPLGDSV 357
Query: 389 AKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADAT-MSTIDKEGWLHTGDIAYFDED 447
A V+ + + G GEL + G Y+N DA I+ TGDI D D
Sbjct: 358 AHVLAPGSNEHVKKGXAGELVIEGSLVANGYLNRPDAKGFCDINGRKXYRTGDIVRXDAD 417
Query: 448 GYLYIVDRLKEVIKYNGYQ------------ISPADLE--TVLICHP 480
+ + R E +K G + +SP D++ T+L+ HP
Sbjct: 418 SSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHP 464
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 95/446 (21%), Positives = 154/446 (34%), Gaps = 80/446 (17%)
Query: 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMN-P 125
++++ QL+ +VA L S GD V++ P + + V FL L G I +P++ P
Sbjct: 58 TLTWSQLYRRTLNVAQELSRCG--STGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVP 115
Query: 126 LLSVSEIKKQVTLCKTKISLAFTIYENVDKL-----RSWGTTPVVAVPENLVNDFKEGRF 180
V++ + L + T VD + R G +P + +L+
Sbjct: 116 QGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLL-------- 167
Query: 181 SDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEAS 240
D F E P TA + Y+SG+T G +H N + V FE
Sbjct: 168 -DLDAPNGYTFKEDEYP-----STAYLQYTSGSTRTPAGVVXSHQN------VRVNFEQL 215
Query: 241 QYEYLSS-------EAVFLAVLPMFHIYXXXXXXXX------XXXXXXXXXXMRRFEASE 287
Y + + ++ LP +H ++R
Sbjct: 216 XSGYFADTDGIPPPNSALVSWLPFYHDXGLVIGICAPILGGYPAVLTSPVSFLQRPARWX 275
Query: 288 MLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAF 347
L D + + P L A G L ++ + SG+ + I+ F F
Sbjct: 276 HLXASDFHAFSAAPNFAFELAARRTTDDDXAGRDLGNILTILSGSERVQAATIKRFADRF 335
Query: 348 PHVDFIQ-----GYGMTEST---AVGTRG-------FNTKKFS----KYFSVG------- 381
+ + YG+ E+T A G F+T+ S K + G
Sbjct: 336 ARFNLQERVIRPSYGLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLIS 395
Query: 382 -LLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTID--------- 431
L + ++VD P G+ GE+W+ G Y D + T
Sbjct: 396 YXLPRSPIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPG 455
Query: 432 -KEG-WLHTGDIAYFDEDGYLYIVDR 455
EG WL TGD + F DG +I+ R
Sbjct: 456 TPEGPWLRTGD-SGFVTDGKXFIIGR 480
>pdb|3KD6|A Chain A, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
pdb|3KD6|B Chain B, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
Length = 313
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 375 SKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRG-PGTMKEYINNADATMSTIDKE 433
SK+ +G + P +Q KV+D ++ L T W+ G P +K+ + D + D E
Sbjct: 120 SKFVCLGNIDPELQLKVLDQIDDPKLVVCDTXNFWIEGKPEELKKVLARVDVFIVN-DSE 178
Query: 434 GWLHTGD 440
L +GD
Sbjct: 179 ARLLSGD 185
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 56/276 (20%), Positives = 96/276 (34%), Gaps = 38/276 (13%)
Query: 199 IRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPM- 257
+ +D A ++++SG+TG KG H L + Y + VFL P+
Sbjct: 211 VGPEDVACVMFTSGSTGRPKGVMSPH------RALTGTYLGQDYAGFGPDEVFLQCSPVS 264
Query: 258 FHIYXXXXXXXXXXXXXXXXXXMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGL 317
+ + + + E+ +++ ++GVT + + L
Sbjct: 265 WDAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP-- 322
Query: 318 CGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKF--- 374
+ + ++ +G PA+ + P + GYG ES GF T
Sbjct: 323 --EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESM-----GFTTHHAVVA 375
Query: 375 ----SKYFSVGLLAPNIQAKVVDWVNGCFLPP---GSTGELWLRGPGTMKEYINNADATM 427
+G+ +A V+D L P G+ GEL++ G G Y++ T
Sbjct: 376 GDLSGTALPIGVPLAGKRAYVLD----DDLKPAANGALGELYVAGAGLAHGYVSRPALTA 431
Query: 428 STI--------DKEGWLHTGDIAYFDEDGYLYIVDR 455
E TGD+A DG L V R
Sbjct: 432 ERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGR 467
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,039,638
Number of Sequences: 62578
Number of extensions: 671348
Number of successful extensions: 1674
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1422
Number of HSP's gapped (non-prelim): 107
length of query: 560
length of database: 14,973,337
effective HSP length: 104
effective length of query: 456
effective length of database: 8,465,225
effective search space: 3860142600
effective search space used: 3860142600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)