Query 037622
Match_columns 560
No_of_seqs 221 out of 2463
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 03:56:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037622.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037622hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 1.3E-85 4.6E-90 693.3 48.3 522 23-558 6-535 (536)
2 2d1s_A Luciferase, luciferin 4 100.0 2.5E-82 8.4E-87 669.4 49.8 520 25-560 11-545 (548)
3 1pg4_A Acetyl-COA synthetase; 100.0 7.2E-82 2.5E-86 678.1 47.4 545 2-559 36-622 (652)
4 3g7s_A Long-chain-fatty-acid-- 100.0 3.3E-82 1.1E-86 669.5 42.5 509 28-559 9-543 (549)
5 1mdb_A 2,3-dihydroxybenzoate-A 100.0 2E-81 6.9E-86 661.5 46.4 494 42-560 25-533 (539)
6 4fuq_A Malonyl COA synthetase; 100.0 2.3E-81 7.8E-86 655.5 45.9 483 54-559 14-501 (503)
7 3rix_A Luciferase, luciferin 4 100.0 1.1E-82 3.8E-87 673.2 35.4 523 20-559 2-542 (550)
8 3r44_A Fatty acyl COA syntheta 100.0 1.1E-81 3.7E-86 660.1 41.4 496 39-560 13-515 (517)
9 1ry2_A Acetyl-coenzyme A synth 100.0 2.7E-81 9.2E-86 673.8 42.7 548 2-559 38-638 (663)
10 1t5h_X 4-chlorobenzoyl COA lig 100.0 2.5E-80 8.4E-85 648.6 47.3 484 42-557 2-503 (504)
11 3etc_A AMP-binding protein; ad 100.0 8E-80 2.7E-84 653.2 45.4 498 42-559 55-580 (580)
12 3tsy_A Fusion protein 4-coumar 100.0 3.9E-80 1.3E-84 695.5 39.4 528 23-559 45-583 (979)
13 3o83_A Peptide arylation enzym 100.0 2.6E-80 8.9E-85 653.8 34.6 495 42-558 30-540 (544)
14 3rg2_A Enterobactin synthase c 100.0 2.9E-78 1E-82 647.4 50.2 495 42-558 27-534 (617)
15 1v25_A Long-chain-fatty-acid-C 100.0 7E-80 2.4E-84 650.1 35.6 499 42-560 18-538 (541)
16 3fce_A D-alanine--poly(phospho 100.0 6E-79 2.1E-83 639.7 40.0 488 42-559 1-505 (512)
17 3ivr_A Putative long-chain-fat 100.0 1.1E-79 3.8E-84 644.7 32.9 487 42-559 6-502 (509)
18 3e7w_A D-alanine--poly(phospho 100.0 1.6E-78 5.5E-83 635.9 41.4 487 42-558 1-503 (511)
19 3c5e_A Acyl-coenzyme A synthet 100.0 6.6E-78 2.3E-82 637.7 43.3 494 43-558 39-562 (570)
20 3l8c_A D-alanine--poly(phospho 100.0 2E-78 6.9E-83 637.4 38.3 491 42-559 4-513 (521)
21 2v7b_A Benzoate-coenzyme A lig 100.0 1.5E-77 5.1E-82 631.7 42.3 493 43-555 25-529 (529)
22 1amu_A GRSA, gramicidin synthe 100.0 1.5E-77 5.2E-82 634.0 41.8 476 42-556 39-527 (563)
23 4gr5_A Non-ribosomal peptide s 100.0 7.6E-79 2.6E-83 646.3 31.5 480 41-555 74-568 (570)
24 4dg8_A PA1221; ANL superfamily 100.0 2.5E-77 8.7E-82 637.4 37.3 473 42-558 27-513 (620)
25 3nyq_A Malonyl-COA ligase; A/B 100.0 2.5E-77 8.6E-82 624.8 33.3 474 42-555 22-505 (505)
26 3ipl_A 2-succinylbenzoate--COA 100.0 1.8E-76 6.2E-81 619.5 36.9 486 43-558 2-497 (501)
27 3kxw_A Saframycin MX1 syntheta 100.0 1.8E-74 6E-79 617.2 32.3 492 42-559 11-568 (590)
28 2vsq_A Surfactin synthetase su 100.0 9E-74 3.1E-78 659.2 39.8 480 42-555 464-957 (1304)
29 3ite_A SIDN siderophore synthe 100.0 8.4E-75 2.9E-79 615.2 27.5 494 42-558 20-543 (562)
30 3gqw_A Fatty acid AMP ligase; 100.0 5E-72 1.7E-76 596.9 40.5 495 39-559 18-564 (576)
31 3t5a_A Long-chain-fatty-acid-- 100.0 5.7E-60 1.9E-64 492.5 26.6 386 42-455 24-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 7.3E-56 2.5E-60 440.7 17.6 316 201-559 36-355 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 4.5E-51 1.5E-55 419.3 25.3 331 198-551 81-430 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 1.1E-50 3.9E-55 417.2 20.0 334 198-554 88-440 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 1.1E-49 3.8E-54 409.1 24.7 330 198-551 86-432 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 1.9E-32 6.5E-37 274.4 15.2 242 198-465 87-368 (369)
37 3gxs_A Phenylacetate-coenzyme 99.5 6.7E-15 2.3E-19 118.2 7.2 94 454-549 1-101 (109)
38 3lax_A Phenylacetate-coenzyme 99.5 1.8E-14 6.2E-19 115.9 7.8 95 454-549 1-101 (109)
39 4eql_A 4-substituted benzoates 99.1 2.8E-10 9.5E-15 116.8 13.6 134 322-479 296-447 (581)
40 4b2g_A GH3-1 auxin conjugating 99.1 7E-10 2.4E-14 113.9 15.0 132 322-477 301-457 (609)
41 4epl_A Jasmonic acid-amido syn 99.0 2.3E-09 7.9E-14 109.7 14.6 145 322-489 301-472 (581)
42 2y27_A Phenylacetate-coenzyme 88.0 2.4 8.2E-05 42.2 10.4 86 67-156 109-196 (437)
43 2y4o_A Phenylacetate-coenzyme 87.5 2.7 9.2E-05 41.9 10.4 86 67-156 111-198 (443)
44 3qov_A Phenylacetate-coenzyme 86.5 3.1 0.0001 41.3 10.1 86 67-156 105-192 (436)
45 3ni2_A 4-coumarate:COA ligase; 80.7 9.3 0.00032 39.0 11.1 100 200-310 35-135 (536)
46 3g7s_A Long-chain-fatty-acid-- 79.0 14 0.00049 37.7 11.9 106 200-311 32-139 (549)
47 3ivr_A Putative long-chain-fat 78.4 12 0.00041 37.9 11.0 99 200-311 19-118 (509)
48 1v25_A Long-chain-fatty-acid-C 73.6 16 0.00054 37.3 10.4 103 200-311 31-134 (541)
49 1t5h_X 4-chlorobenzoyl COA lig 72.9 20 0.0007 36.0 11.0 100 200-310 15-117 (504)
50 2v7b_A Benzoate-coenzyme A lig 70.8 16 0.00053 37.2 9.6 98 200-310 36-134 (529)
51 3etc_A AMP-binding protein; ad 70.1 19 0.00067 37.1 10.2 98 200-305 69-167 (580)
52 3rix_A Luciferase, luciferin 4 69.7 15 0.00051 37.6 9.2 88 221-312 50-138 (550)
53 3hgu_A EHPF; phenazine, antibi 69.2 12 0.0004 36.0 7.9 85 67-156 110-219 (369)
54 3t5a_A Long-chain-fatty-acid-- 69.1 21 0.0007 35.6 10.0 106 200-312 37-148 (480)
55 3r44_A Fatty acyl COA syntheta 68.4 22 0.00074 36.0 10.0 100 200-310 29-129 (517)
56 2d1s_A Luciferase, luciferin 4 68.2 16 0.00054 37.4 8.9 86 221-310 52-138 (548)
57 3c5e_A Acyl-coenzyme A synthet 66.7 20 0.0007 36.8 9.5 104 200-311 56-161 (570)
58 4fuq_A Malonyl COA synthetase; 65.7 24 0.00082 35.5 9.7 82 221-306 28-110 (503)
59 1amu_A GRSA, gramicidin synthe 65.6 27 0.00092 35.8 10.1 98 200-310 52-150 (563)
60 1ry2_A Acetyl-coenzyme A synth 64.4 44 0.0015 35.0 11.7 100 200-305 95-195 (663)
61 3o83_A Peptide arylation enzym 60.7 35 0.0012 34.7 9.9 92 200-304 43-135 (544)
62 3tsy_A Fusion protein 4-coumar 60.1 38 0.0013 37.5 10.7 99 200-309 74-173 (979)
63 3ipl_A 2-succinylbenzoate--COA 59.3 74 0.0025 31.7 12.0 98 53-157 161-266 (501)
64 4gr5_A Non-ribosomal peptide s 59.2 35 0.0012 35.0 9.6 94 200-306 88-182 (570)
65 1pg4_A Acetyl-COA synthetase; 58.6 28 0.00096 36.5 8.9 97 201-304 90-187 (652)
66 3ezx_A MMCP 1, monomethylamine 57.5 49 0.0017 28.9 8.9 91 248-342 93-194 (215)
67 3gqw_A Fatty acid AMP ligase; 55.2 59 0.002 33.1 10.6 87 221-311 49-143 (576)
68 3kxw_A Saframycin MX1 syntheta 55.2 49 0.0017 33.9 10.0 103 200-311 24-130 (590)
69 3l8c_A D-alanine--poly(phospho 51.9 34 0.0012 34.5 8.0 79 222-304 30-109 (521)
70 1mdb_A 2,3-dihydroxybenzoate-A 50.8 40 0.0014 34.2 8.3 91 201-304 39-130 (539)
71 3rg2_A Enterobactin synthase c 44.9 66 0.0022 33.3 9.0 91 201-304 39-130 (617)
72 3fce_A D-alanine--poly(phospho 44.7 49 0.0017 33.2 7.8 79 221-303 26-105 (512)
73 4dg8_A PA1221; ANL superfamily 43.9 75 0.0026 32.9 9.2 91 200-303 40-131 (620)
74 3ite_A SIDN siderophore synthe 42.5 89 0.0031 31.7 9.5 99 200-304 33-134 (562)
75 3e7w_A D-alanine--poly(phospho 40.3 64 0.0022 32.4 7.8 80 221-303 26-106 (511)
76 2cvi_A 75AA long hypothetical 39.7 93 0.0032 21.9 6.6 50 469-528 15-64 (83)
77 4gs5_A Acyl-COA synthetase (AM 35.3 99 0.0034 29.3 7.9 93 55-156 37-137 (358)
78 3tbh_A O-acetyl serine sulfhyd 31.6 1.4E+02 0.0048 28.0 8.1 91 56-151 36-127 (334)
79 3nyq_A Malonyl-COA ligase; A/B 30.6 1.1E+02 0.0038 30.6 7.7 76 221-305 48-124 (505)
80 1y80_A Predicted cobalamin bin 29.3 2.3E+02 0.008 24.2 8.7 88 249-340 90-186 (210)
81 2zbc_A 83AA long hypothetical 29.3 1.4E+02 0.0049 20.7 7.0 49 469-527 15-63 (83)
82 2vsq_A Surfactin synthetase su 28.1 1.7E+02 0.0057 33.6 9.4 82 221-306 489-571 (1304)
83 4hlb_A Uncharacterized protein 27.2 1.6E+02 0.0056 20.6 5.7 36 65-100 61-96 (115)
84 2jtq_A Phage shock protein E; 25.4 1.2E+02 0.0043 21.2 5.2 45 66-118 22-66 (85)
85 3ju7_A Putative PLP-dependent 24.5 1.8E+02 0.0062 27.6 7.7 62 83-148 69-135 (377)
86 3vc3_A Beta-cyanoalnine syntha 23.6 2.3E+02 0.0079 26.6 8.1 91 56-150 51-141 (344)
87 3ijw_A Aminoglycoside N3-acety 23.3 60 0.002 29.4 3.6 25 78-103 18-42 (268)
88 3tha_A Tryptophan synthase alp 22.0 3.4E+02 0.012 24.1 8.3 17 205-221 168-184 (252)
89 2nyg_A YOKD protein; PFAM02522 21.7 66 0.0023 29.2 3.6 24 79-103 17-40 (273)
90 3sma_A FRBF; N-acetyl transfer 21.6 68 0.0023 29.3 3.6 31 65-103 19-49 (286)
91 2l66_A SSO7C4, transcriptional 20.6 92 0.0032 19.9 3.2 20 84-103 20-39 (53)
92 4eez_A Alcohol dehydrogenase 1 20.5 1.8E+02 0.0063 27.1 6.7 71 67-141 136-209 (348)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=1.3e-85 Score=693.31 Aligned_cols=522 Identities=38% Similarity=0.627 Sum_probs=454.7
Q ss_pred CceeccCCCCCCCCCCCCCCCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEc
Q 037622 23 TGIYHSKHPSVNLPANDSLLDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLL 100 (560)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~ 100 (560)
..++.++.++..+|. ..|+++++.++++ ++++|+++..+++++||+||.++++++|++|.+ +|+++||+|+|++
T Consensus 6 ~~i~~~~~~~~~~p~---~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~ 81 (536)
T 3ni2_A 6 EFIFRSKLPDIYIPK---NLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNK-IGIQQGDVIMLFL 81 (536)
T ss_dssp CCCBCCSSCCCCCCS---SCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEEC
T ss_pred ceEEecCCCCCCCCC---CCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEc
Confidence 346667766666653 3799999998875 569999997667899999999999999999999 8999999999999
Q ss_pred CCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcC---CCCEEEecCCCcccccC
Q 037622 101 PNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWG---TTPVVAVPENLVNDFKE 177 (560)
Q Consensus 101 ~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~---~~~vi~~~~~~~~~~~~ 177 (560)
+|++++++++|||+++|++++|++|.++.+++.++++.+++ ++++++......+.... ...++.++.. .
T Consensus 82 ~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 153 (536)
T 3ni2_A 82 PSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRA--KLLITQACYYEKVKDFARESDVKVMCVDSA------P 153 (536)
T ss_dssp CSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTE--EEEEECGGGTHHHHHHHHHHTCEEEESSCC------C
T ss_pred CCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCC--EEEEEChHHHHHHHHHHhhcCceEEEecCC------C
Confidence 99999999999999999999999999999999999999999 99999987665544321 2445554432 2
Q ss_pred CCcccHHHhhcccCCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecCh
Q 037622 178 GRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPM 257 (560)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 257 (560)
.....+.++..............++++++|+|||||||.||+|+++|+++.+.+........ ....+.++|++++.+|+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~-~~~~~~~~d~~l~~~p~ 232 (536)
T 3ni2_A 154 DGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDN-PNLYFHSEDVILCVLPM 232 (536)
T ss_dssp TTCEETHHHHTSCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSS-CSSCCCTTCCEEECSCT
T ss_pred CCccCHHHHhhccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhcc-ccccCCCCCEEEEecCh
Confidence 23344555554433333444567899999999999999999999999999987766543111 02457789999999999
Q ss_pred hhHHhHHHHHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCH
Q 037622 258 FHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANS 337 (560)
Q Consensus 258 ~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~ 337 (560)
+|.+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++. ......+++++|.+++|||++++
T Consensus 233 ~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~l~~lr~i~~gGe~l~~ 311 (536)
T 3ni2_A 233 FHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKS-PDLDKHDLSSLRMIKSGGAPLGK 311 (536)
T ss_dssp TSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTC-SCGGGSCCTTCCEEEEESSCCCH
T ss_pred HHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhC-cccccCCCccceEEEECCCCCCH
Confidence 99999977788999999999999999999999999999999999999999999876 44455678999999999999999
Q ss_pred HHHHHHHHhCCCCeeecccchhhcccccccCC---CCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEeccc
Q 037622 338 KIIEDFVGAFPHVDFIQGYGMTESTAVGTRGF---NTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPG 414 (560)
Q Consensus 338 ~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~---~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~ 414 (560)
++.+++.+.||++++++.||+||++.+++.+. ........+++|+|+|+++++|+|++++++++.|+.|||+|+|++
T Consensus 312 ~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~ 391 (536)
T 3ni2_A 312 ELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQ 391 (536)
T ss_dssp HHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTT
T ss_pred HHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcc
Confidence 99999999999999999999999997765442 122234678999999999999999888999999999999999999
Q ss_pred chhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCC
Q 037622 415 TMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKV 494 (560)
Q Consensus 415 ~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~ 494 (560)
++.||+++|+.|...|+.+|||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++.+++.
T Consensus 392 v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~ 471 (536)
T 3ni2_A 392 IMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDED 471 (536)
T ss_dssp SCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETT
T ss_pred cchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCC
Confidence 99999999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEEecCCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 495 LGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 495 ~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
.++.++++|+..++...+.++++++++++|+.|++|+.++++++||+|++|||+|++|+++++.
T Consensus 472 ~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 472 AGEVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp TEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred CCceeEEEEEecCCCCCCHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 9999999999988888889999999999999999999999999999999999999999998753
No 2
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=2.5e-82 Score=669.40 Aligned_cols=520 Identities=30% Similarity=0.476 Sum_probs=441.3
Q ss_pred eeccCCCCCCCCCCCCCCCHHH-HHhccCCC-CceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCC
Q 037622 25 IYHSKHPSVNLPANDSLLDVDS-FIFSHKHN-GRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPN 102 (560)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~ 102 (560)
+|.++.+....|. ..|+.+ ++.++++. +++|+++...++++||+||.++++++|.+|.+ +|+++||+|+|+++|
T Consensus 11 ~~~~~~~~~~~p~---~~~l~~~~l~~~~~~~~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n 86 (548)
T 2d1s_A 11 VVGPKPFYPIEEG---SAGTQLRKYMERYAKLGAIAFTNAVTGVDYSYAEYLEKSCCLGKALQN-YGLVVDGRIALCSEN 86 (548)
T ss_dssp EECCCCSSCCCSS---CHHHHHHHHHHHHHHHTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEEECSS
T ss_pred EecCCCCCCCCCC---cCcHHHHHHHhhhcccCCceEEEcCCCCEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCC
Confidence 5555555444432 257888 66555421 78999985447899999999999999999999 899999999999999
Q ss_pred CChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcC-----CCCEEEecCCCcccccC
Q 037622 103 SIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWG-----TTPVVAVPENLVNDFKE 177 (560)
Q Consensus 103 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~-----~~~vi~~~~~~~~~~~~ 177 (560)
++++++++|||+++|++++|++|.++.+++.++++.+++ ++++++......+.... ...++.++... ..
T Consensus 87 ~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 160 (548)
T 2d1s_A 87 CEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKP--TIVFSSKKGLDKVITVQKTVTTIKTIVILDSKV----DY 160 (548)
T ss_dssp CTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCC--SEEEECTTTHHHHHHHHHHSTTCCEEEETTCSS----CB
T ss_pred chhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCC--eEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcc----cc
Confidence 999999999999999999999999999999999999999 99999887665543321 13344443221 00
Q ss_pred CCcccHHHhhcccCCC-CCCCCCC-----C-CCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcE
Q 037622 178 GRFSDFHKLIAGKFDL-VERPVIR-----Q-QDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAV 250 (560)
Q Consensus 178 ~~~~~~~~~~~~~~~~-~~~~~~~-----~-~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (560)
.....+.++....... ....... + +++++|+|||||||.||+|+++|+++...+........ ...+.++|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~--~~~~~~~d~ 238 (548)
T 2d1s_A 161 RGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY--GNQVSPGTA 238 (548)
T ss_dssp TTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTT--SCCCCTTCE
T ss_pred cccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhh--ccCCCccce
Confidence 1223355544332111 1111122 4 89999999999999999999999999988776654110 146788999
Q ss_pred EEEecChhhHHhHHHHHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeec
Q 037622 251 FLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSS 330 (560)
Q Consensus 251 ~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~ 330 (560)
+++.+|++|.+++...++.++ .|+++++.+.+++..+++.++++++|+++++|+++..|.+. ......+++++|.+++
T Consensus 239 ~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~l~~lr~i~~ 316 (548)
T 2d1s_A 239 VLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS-ELLNKYDLSNLVEIAS 316 (548)
T ss_dssp EEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHC-SCGGGSCCTTCCEEEE
T ss_pred EEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhC-cccccccccceeEEEE
Confidence 999999999999975577778 99999999999999999999999999999999999999875 3334457889999999
Q ss_pred ccCCCCHHHHHHHHHhCCCCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEE
Q 037622 331 GAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWL 410 (560)
Q Consensus 331 ~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v 410 (560)
||+++++++.+++.+.|+++++++.||+||++.+++.... ...+.+++|+|+|+++++|+|++++++++.|+.|||+|
T Consensus 317 gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~--~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v 394 (548)
T 2d1s_A 317 GGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPE--GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCV 394 (548)
T ss_dssp CSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCT--TCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEE
T ss_pred cCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCc--ccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEE
Confidence 9999999999999999988999999999999987765432 23467899999999999999988899999999999999
Q ss_pred ecccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcc
Q 037622 411 RGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGA 490 (560)
Q Consensus 411 ~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~ 490 (560)
+|++++.||+++|+.|.+.|+.+|||+|||+|++++||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++.
T Consensus 395 ~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~ 474 (548)
T 2d1s_A 395 KGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGV 474 (548)
T ss_dssp ESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEE
T ss_pred CCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEE
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceEEEEEEecCCCCCCHHHHHHHHHhccCCCCCcc-eEEEecCCCCCCCCcchHHHHHHHHhccC
Q 037622 491 MDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVR-RVVFTKSIPKSAAGKVLRRELRKFLTSKL 560 (560)
Q Consensus 491 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~-~i~~~~~lP~t~~GKi~r~~L~~~~~~~~ 560 (560)
+++..|+.++++|++.++...+.++++++|+++|+.|++|+ .++++++||+|++||++|++|++.+.+.|
T Consensus 475 ~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i 545 (548)
T 2d1s_A 475 PDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPV 545 (548)
T ss_dssp EETTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSCC
T ss_pred EcCCCCeeeEEEEEEcCCCCCCHHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhhh
Confidence 99988999999999988777889999999999999999999 89999999999999999999999998764
No 3
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=7.2e-82 Score=678.07 Aligned_cols=545 Identities=23% Similarity=0.307 Sum_probs=448.1
Q ss_pred hhhhhhccCCCCCCCCCCCCCCceeccC----CCCCCCCCCCCCC-CHHHHHhccCC--CCceEEEEC----CCCceecH
Q 037622 2 EKFLQTFSSERINTSQWYSPETGIYHSK----HPSVNLPANDSLL-DVDSFIFSHKH--NGRTALVDS----LSGYSISY 70 (560)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~a~~~~----~~~~~~Ty 70 (560)
++||.+.+. ...|.++...+.... .|...|+. +..+ +++++|.++++ ++++|+++. ..++++||
T Consensus 36 ~~~w~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~wf~-~~~~n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY 110 (652)
T 1pg4_A 36 DTFWGEQGK----ILDWITPYQKVKNTSFAPGNVSIKWYE-DGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISY 110 (652)
T ss_dssp HHHHHHHGG----GSCCSBCCSCCEEEECCTTCCEEEEST-TCEECHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEH
T ss_pred HHHHHHHHh----hCceecCCcccccCccccCCCCCEECC-CCChhHHHHHHHHHhccCCCceEEEEEcCCCCceeEEeH
Confidence 467777654 267888877776543 33345654 3333 45666666654 779999862 13478999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeec
Q 037622 71 PQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIY 150 (560)
Q Consensus 71 ~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~ 150 (560)
+||.++++++|++|.+ +|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++.+++ +++++++
T Consensus 111 ~eL~~~v~~lA~~L~~-~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~--~~li~~~ 187 (652)
T 1pg4_A 111 RELHRDVCRFANTLLD-LGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSS--RLVITAD 187 (652)
T ss_dssp HHHHHHHHHHHHHHHH-HTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTC--SEEEEES
T ss_pred HHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCC--CEEEEcC
Confidence 9999999999999999 899999999999999999999999999999999999999999999999999999 8888876
Q ss_pred cchH------------HhhhcC---C-CCEEEecCCCcc-cccCCCcccHHHhhcccCCCCCCCCCCCCCEEEEEcCCCC
Q 037622 151 ENVD------------KLRSWG---T-TPVVAVPENLVN-DFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSSGT 213 (560)
Q Consensus 151 ~~~~------------~~~~~~---~-~~vi~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGT 213 (560)
.... ...... . ..++.++..... .........+.+++.............++++++|+|||||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGT 267 (652)
T 1pg4_A 188 EGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGS 267 (652)
T ss_dssp EEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCS
T ss_pred ccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccCCCceeHHHHHhhcCCCCCccccCCCCCEEEEeccCC
Confidence 5321 111111 1 234554422100 0111123346666554333233345568999999999999
Q ss_pred CCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCC----cCHHHHH
Q 037622 214 TGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRR----FEASEML 289 (560)
Q Consensus 214 TG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~ 289 (560)
||.||||+++|++++......... .++++++|++++..|++|+.+....++.+|..|+++++.+. +++..++
T Consensus 268 TG~PKgV~~sh~~~~~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~ 343 (652)
T 1pg4_A 268 TGKPKGVLHTTGGYLVYAATTFKY----VFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMC 343 (652)
T ss_dssp SSSCEEEEEESHHHHHHHHHHHHH----HTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHH
T ss_pred CCCCceEEECchHHHHHHHHHHHH----hcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHH
Confidence 999999999999988765433221 36688999999999999999987688899999999999875 5899999
Q ss_pred HHHHHhCcceeccCcHHHHHHHHhhhc-cCCCCCCccceeecccCCCCHHHHHHHHHhCC--CCeeecccchhhcccccc
Q 037622 290 KVIDKYGVTHFPVVPPILMALTKAAKG-LCGNSLKSLKQVSSGAAPANSKIIEDFVGAFP--HVDFIQGYGMTESTAVGT 366 (560)
Q Consensus 290 ~~l~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~--~~~i~~~YG~tE~~~~~~ 366 (560)
+.++++++|+++++|++++.|.+.... ....++++||.+++|||++++++++++.+.++ ++++++.||+||++..++
T Consensus 344 ~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~ 423 (652)
T 1pg4_A 344 QVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMI 423 (652)
T ss_dssp HHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSB
T ss_pred HHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCccccccee
Confidence 999999999999999999999876322 34467899999999999999999999999883 289999999999998766
Q ss_pred cCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEec--ccchhhhcCCchhhhhccC--CCCceecCceE
Q 037622 367 RGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRG--PGTMKEYINNADATMSTID--KEGWLHTGDIA 442 (560)
Q Consensus 367 ~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~--~~~~~~TGD~~ 442 (560)
.........+.+++|+|+||++++|+| +++++++.|+.|||+|+| |+++.||+++|+.+...+. .+|||+|||+|
T Consensus 424 ~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg 502 (652)
T 1pg4_A 424 TPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGA 502 (652)
T ss_dssp CCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEE
T ss_pred cCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEE
Confidence 544333345678999999999999999 679999999999999999 7999999999998877652 37899999999
Q ss_pred EEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCC---HHHHHHH
Q 037622 443 YFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLT---EAAVIDY 519 (560)
Q Consensus 443 ~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~ 519 (560)
++|+||+++++||+||+||++|++|++.|||++|.+||+|.+++|++.+++..|+.++++|++.++...+ .++|+++
T Consensus 503 ~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~ 582 (652)
T 1pg4_A 503 RRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNW 582 (652)
T ss_dssp EECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred EEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998899999999998775544 4789999
Q ss_pred HHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 520 LAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 520 ~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
|+++|++|++|+.|+++++||+|++|||+|++|++.+.++
T Consensus 583 l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 622 (652)
T 1pg4_A 583 VRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD 622 (652)
T ss_dssp HHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred HHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCC
Confidence 9999999999999999999999999999999999998764
No 4
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=3.3e-82 Score=669.48 Aligned_cols=509 Identities=28% Similarity=0.458 Sum_probs=399.9
Q ss_pred cCCCCCCCCCCCCCCCHHHHHhccCC--CCceEEEECCCC------ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEE
Q 037622 28 SKHPSVNLPANDSLLDVDSFIFSHKH--NGRTALVDSLSG------YSISYPQLFPLVQSVASGLRHHFGISQGDAVLLL 99 (560)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~------~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~ 99 (560)
...|+..+|. .|+.++|.++++ ++++|+++...+ +++||+||.++++++|.+|.+ .|+++||+|+|+
T Consensus 9 ~~~p~~~~~~----~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~ 83 (549)
T 3g7s_A 9 IGFPSLYYPK----ISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISR-KGVRKGEHVGVC 83 (549)
T ss_dssp CCCCCCCCCC----CCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEE
T ss_pred cCCCCCCcCC----CCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEE
Confidence 3445555555 889999888775 679999976321 899999999999999999999 799999999999
Q ss_pred cCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC----CCEEEecCCCcccc
Q 037622 100 LPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT----TPVVAVPENLVNDF 175 (560)
Q Consensus 100 ~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~----~~vi~~~~~~~~~~ 175 (560)
++|++++++++|||+++|++++|++|.++.+++.++++.+++ ++++++......+..... ..++..+.
T Consensus 84 ~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~------ 155 (549)
T 3g7s_A 84 IPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEA--TTLVVHSMLYENFKPVLEKTGVERVFVVGG------ 155 (549)
T ss_dssp CCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTC--SEEEEEGGGHHHHHHHHTTSCCCEEEEETC------
T ss_pred CCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCC--CEEEEChHHHHHHHHHHhhCCCcEEEEeCC------
Confidence 999999999999999999999999999999999999999999 999999877665543221 22333321
Q ss_pred cCCCcccHHHhhcccCCCCCCCCCCC-CCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEe
Q 037622 176 KEGRFSDFHKLIAGKFDLVERPVIRQ-QDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAV 254 (560)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (560)
....+.++..............+ +++++|+|||||||.||+|+++|.++.+.+..... ...+.+.|+++.+
T Consensus 156 ---~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~-----~~~~~~~d~~~~~ 227 (549)
T 3g7s_A 156 ---EVNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAV-----ATGLSHMDTIVGC 227 (549)
T ss_dssp ---SSSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHH-----HHCCCTTCEEECC
T ss_pred ---CCcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHH-----HcCCCCCCEEEEe
Confidence 22345555444333323333344 89999999999999999999999999998887766 4678899999999
Q ss_pred cChhhHHhHHHHHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhcc-CCCCCCccceeecccC
Q 037622 255 LPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGL-CGNSLKSLKQVSSGAA 333 (560)
Q Consensus 255 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~l~~lr~~~~~g~ 333 (560)
+|++|.+++. .++.++..|+++++.+.+++..+++.++++++|+++++|+++..|++..... ...+++++|.+++||+
T Consensus 228 ~p~~~~~~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~ 306 (549)
T 3g7s_A 228 MPMFHSAEFG-LVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAW 306 (549)
T ss_dssp SCTTSHHHHH-HHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESS
T ss_pred CcHHHHHHHH-HHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCc
Confidence 9999999986 4888999999999999999999999999999999999999999998763222 2257889999999999
Q ss_pred CCCHHHHHHHHHh----C--CCCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcce
Q 037622 334 PANSKIIEDFVGA----F--PHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGE 407 (560)
Q Consensus 334 ~~~~~~~~~~~~~----~--~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Ge 407 (560)
++++++.+++.+. + |++++++.||+||++.+++...... ....+++|+|+|+++++|+|++++++++.|+.||
T Consensus 307 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GE 385 (549)
T 3g7s_A 307 PVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR-LDKSTTQGVPMSDIELKVISLEDGRELGVGESGE 385 (549)
T ss_dssp CCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGG-GGGTTSCCEECTTCEEEEECSSSCCEECTTCCEE
T ss_pred cCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccc-cCcCCCccccCCCCEEEEEeCCCCcCCCCCCceE
Confidence 9999999999987 5 2389999999999998877654322 2467889999999999999988999999999999
Q ss_pred EEEecccchhhhcCCchhhhhccC--CCC--ceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcc
Q 037622 408 LWLRGPGTMKEYINNADATMSTID--KEG--WLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEIL 483 (560)
Q Consensus 408 l~v~~~~~~~gy~~~~~~~~~~~~--~~~--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~ 483 (560)
|+|+||+++.||+++|+.|.+.|. .+| ||+|||+|++|+||.++++||.||+||++|++|+|.|||++|.++|+|.
T Consensus 386 l~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~ 465 (549)
T 3g7s_A 386 IVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVM 465 (549)
T ss_dssp EEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEE
T ss_pred EEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCee
Confidence 999999999999999999998873 566 9999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcccCCCCCceEEEEEEecCC--CCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 484 DVAVTGAMDKVLGEIPVAFVVRRDG--STLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 484 ~~~v~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
+++|++.+++..++.++++|++.++ ...+.++++++|+++|+.|++|+.++++++||+|++|||+|++|++...++
T Consensus 466 ~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 543 (549)
T 3g7s_A 466 DVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEG 543 (549)
T ss_dssp EEEEECCCC------CEEEEEECSTTTTSCCHHHHHHHHHTTCC-----CCCCEEEECC-------------------
T ss_pred eEEEEeeEccccCceEEEEEEECCCccCcCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhcc
Confidence 9999999999999999999998876 567889999999999999999999999999999999999999999987653
No 5
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=2e-81 Score=661.55 Aligned_cols=494 Identities=28% Similarity=0.406 Sum_probs=425.4
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.|+.++|.++++ ++++|++++ ++++||+||.++++++|++|.+ +|+++||+|+|+++|++++++++|||+++|++
T Consensus 25 ~tl~~~l~~~a~~~p~~~A~~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 101 (539)
T 1mdb_A 25 ETFGDLLRDRAAKYGDRIAITCG--NTHWSYRELDTRADRLAAGFQK-LGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL 101 (539)
T ss_dssp CCHHHHHHHHHHHHTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred CCHHHHHHHHHHHCCCCEEEEeC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeE
Confidence 689999888764 679999987 7899999999999999999999 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccch--------HHhhh-cCC-CCEEEecCCCcccccCCCcccHHHhhcc
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENV--------DKLRS-WGT-TPVVAVPENLVNDFKEGRFSDFHKLIAG 189 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~--------~~~~~-~~~-~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 189 (560)
++|++|.++.+++.++++.+++ +++++++... ..+.. ... ..++..++.. .+.++...
T Consensus 102 ~vpl~~~~~~~~l~~~l~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 169 (539)
T 1mdb_A 102 PVFALPSHRSSEITYFCEFAEA--AAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE----------EFLPLEDL 169 (539)
T ss_dssp EEECCTTCCHHHHHHHHHHTTC--SEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT----------TSEEGGGC
T ss_pred EecCCCCCCHHHHHHHHHhCCC--CEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc----------chhhhhhc
Confidence 9999999999999999999999 8888876531 11211 111 2233322210 11112111
Q ss_pred cCCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHH-HHH
Q 037622 190 KFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSL-FAL 268 (560)
Q Consensus 190 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~ 268 (560)
...........++++++|+|||||||.||+|+++|+++.+.+..... ...++++|++++.+|++|.+++.. .++
T Consensus 170 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~-----~~~~~~~d~~l~~~p~~h~~~~~~~~~~ 244 (539)
T 1mdb_A 170 HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE-----VCWLDHSTVYLAALPMAHNYPLSSPGVL 244 (539)
T ss_dssp CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH-----HHTCCTTCEEEECSCTTSHHHHHSSHHH
T ss_pred cccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHH-----hhCCCCCCEEEEeecccccchhhHHHHH
Confidence 11111223456789999999999999999999999999988877665 456889999999999999999865 688
Q ss_pred HHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCC
Q 037622 269 GLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFP 348 (560)
Q Consensus 269 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~ 348 (560)
.++..|+++++.+.+++..+++.++++++|++.++|+++..+++. ......+++++|.+++||+++++++.+++.+.+
T Consensus 245 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~- 322 (539)
T 1mdb_A 245 GVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDA-ASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF- 322 (539)
T ss_dssp HHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHH-HHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-
T ss_pred HHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhC-ccccCCCccceeEEEEcCCCCCHHHHHHHHHHh-
Confidence 999999999999999999999999999999999999999999876 344556789999999999999999999999998
Q ss_pred CCeeecccchhhcccccccCCCCCCCCcccccccccCC-eEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhh
Q 037622 349 HVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPN-IQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATM 427 (560)
Q Consensus 349 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~-~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~ 427 (560)
++++++.||+||++..++. .........+++|+|+++ .+++|+| +++++++.|+.|||+|+||+++.||+++|+.|.
T Consensus 323 ~~~~~~~YG~TE~~~~~~~-~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~ 400 (539)
T 1mdb_A 323 GCTLQQVFGMAEGLVNYTR-LDDPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNA 400 (539)
T ss_dssp CSEEEEEEECTTSCEEECC-TTSCHHHHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHH
T ss_pred CCcEEEEEcCCCCcccccC-CCCcHHhcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChhhhh
Confidence 8999999999996644332 222112345789999975 5899999 678999999999999999999999999999999
Q ss_pred hccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecC
Q 037622 428 STIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRD 507 (560)
Q Consensus 428 ~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 507 (560)
..|..+|||+|||+|++|+||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++.+++..|+.++++|++..
T Consensus 401 ~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~ 480 (539)
T 1mdb_A 401 ASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD 480 (539)
T ss_dssp HHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS
T ss_pred hhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECC
Confidence 99988999999999999999999999999999999999999999999999999999999999999988999999999874
Q ss_pred CCCCCHHHHHHHHHhc-cCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhccC
Q 037622 508 GSTLTEAAVIDYLAQR-VAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSKL 560 (560)
Q Consensus 508 ~~~~~~~~l~~~~~~~-l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~~ 560 (560)
...+.++++++++++ |+.|++|+.|+++++||+|++||++|++|++.+.++|
T Consensus 481 -~~~~~~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i 533 (539)
T 1mdb_A 481 -EAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL 533 (539)
T ss_dssp -SCCCHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHH
Confidence 457789999999998 9999999999999999999999999999999987653
No 6
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=2.3e-81 Score=655.47 Aligned_cols=483 Identities=26% Similarity=0.401 Sum_probs=419.8
Q ss_pred CCceEEE--ECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHH
Q 037622 54 NGRTALV--DSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSE 131 (560)
Q Consensus 54 ~~~~a~~--~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~ 131 (560)
++++|+. .. .++++||+||.++++++|++|.+ +|+++||+|+|+++|++++++++|||+++|++++|++|.++.++
T Consensus 14 p~~~a~~~~~~-~~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~ 91 (503)
T 4fuq_A 14 DDPHKLAIETA-AGDKISYAELVARAGRVANVLVA-RGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHE 91 (503)
T ss_dssp SCTTSEEEEET-TCCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTCCHHH
T ss_pred CCCceEEEecC-CCcEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEecCCCCCHHH
Confidence 4444443 33 37899999999999999999999 79999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCceEEEEeeccchHHhhhcC---CCCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCCCCCCCEEEEE
Q 037622 132 IKKQVTLCKTKISLAFTIYENVDKLRSWG---TTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAIL 208 (560)
Q Consensus 132 l~~~l~~~~~~~~~v~~~~~~~~~~~~~~---~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~ 208 (560)
+.++++.+++ ++++++......+.... ...+..+.... ...+.................++++++|+
T Consensus 92 l~~il~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~d~a~i~ 161 (503)
T 4fuq_A 92 LDYFITDAEP--KIVVCDPSKRDGIAAIAAKVGATVETLGPDG--------RGSLTDAAAGASEAFATIDRGADDLAAIL 161 (503)
T ss_dssp HHHHHHHHCC--SEEEECGGGTTTTHHHHHHHTCEEEECCTTS--------CSHHHHHHHTSCSCCCCCCCCTTSEEEEE
T ss_pred HHHHHHhcCC--cEEEECchhhHHHHHHHhhcCceEEEecCCc--------ccccchhhhcCCCCcCcCCCCCCCeEEEE
Confidence 9999999999 99999876544332211 12233332211 11122222222222333456789999999
Q ss_pred cCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCCcCHHHH
Q 037622 209 YSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEM 288 (560)
Q Consensus 209 ~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~ 288 (560)
|||||||.||+|+++|+++.+.+..... ...++++|++++.+|++|.+|+....+.++..|+++++.+.+++..+
T Consensus 162 ~TSGTTG~PKgV~~sh~~l~~~~~~~~~-----~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~ 236 (503)
T 4fuq_A 162 YTSGTTGRSKGAMLSHDNLASNSLTLVD-----YWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKI 236 (503)
T ss_dssp ECC--CCSCCEEEEEHHHHHHHHHHHHH-----HTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHH
T ss_pred ECCCcccCCeEEEEeHHHHHHHHHHHHH-----HhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHH
Confidence 9999999999999999999998887776 56788999999999999999986677889999999999999999999
Q ss_pred HHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccchhhcccccccC
Q 037622 289 LKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRG 368 (560)
Q Consensus 289 ~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~ 368 (560)
++.++ ++|+++++|+++..+++. .......++++|.+++||+++++++.+.|.+.+ ++++++.||+||++..++..
T Consensus 237 ~~~i~--~~t~~~~~P~~~~~l~~~-~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~ 312 (503)
T 4fuq_A 237 LDLMA--RATVLMGVPTFYTRLLQS-PRLTKETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTSNP 312 (503)
T ss_dssp HHHHT--TCCEEEECHHHHHHHHTC-TTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEECCEETTTEECBCCC
T ss_pred HHHHh--hcCEEEEHHHHHHHHHhC-CCccccchhhcEEEEECCCCCCHHHHHHHHHHh-CCCccceEcccccCcccccC
Confidence 99998 899999999999999876 444556788999999999999999999999998 89999999999998775432
Q ss_pred CCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEccCC
Q 037622 369 FNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDG 448 (560)
Q Consensus 369 ~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g 448 (560)
. ......+++|+|+|+++++|+|++++++++.|+.|||+|+||+++.||+++|+.|.+.|..+|||+|||+|++++||
T Consensus 313 ~--~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG 390 (503)
T 4fuq_A 313 Y--DGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERG 390 (503)
T ss_dssp S--SSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTC
T ss_pred C--CCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCC
Confidence 2 23446789999999999999998899999999999999999999999999999999999889999999999999999
Q ss_pred cEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCHHHHHHHHHhccCCCC
Q 037622 449 YLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYK 528 (560)
Q Consensus 449 ~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~ 528 (560)
.++++||.||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.++++|+..++...+.++++++++++|+.|+
T Consensus 391 ~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~ 470 (503)
T 4fuq_A 391 YVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFK 470 (503)
T ss_dssp EEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHBTTBCGGG
T ss_pred cEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHHhhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999998888899999999999999999
Q ss_pred CcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 529 KVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 529 ~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
+|+.++++++||+|++||++|++|++.+.+.
T Consensus 471 ~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 501 (503)
T 4fuq_A 471 MPKKVIFVDDLPRNTMGKVQKNVLRETYKDI 501 (503)
T ss_dssp CCSEEEEESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCcccceeHHHHHHHHHHh
Confidence 9999999999999999999999999998764
No 7
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1.1e-82 Score=673.24 Aligned_cols=523 Identities=30% Similarity=0.486 Sum_probs=343.1
Q ss_pred CCCCceeccCCCCCCCCCCCCCCCHHHHHhccCC--CCceEE---EECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCC
Q 037622 20 SPETGIYHSKHPSVNLPANDSLLDVDSFIFSHKH--NGRTAL---VDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGD 94 (560)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~a~---~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd 94 (560)
+...+++.++.+..+++. .|+.+++.++++ ++++|+ +++..++++||+||.++++++|++|.+ +|+++||
T Consensus 2 e~~~~~~~~~~~~~~~~~----~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd 76 (550)
T 3rix_A 2 EDAKNIKKGPAPFYPLED----GTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-YGLNTNH 76 (550)
T ss_dssp -CGGGSEECCCCSSCCCC----SCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-HTCCTTC
T ss_pred CcccceeeCCCCCCCccc----CCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHH-hCCCCCC
Confidence 345678888888877776 899999988775 446654 466567899999999999999999999 7999999
Q ss_pred EEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcC----C-CCEEEecC
Q 037622 95 AVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWG----T-TPVVAVPE 169 (560)
Q Consensus 95 ~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~----~-~~vi~~~~ 169 (560)
+|+|+++|++++++++|||+++|++++|+++.++.+++.++++.+++ ++++++......+.... . ..++.++.
T Consensus 77 ~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (550)
T 3rix_A 77 RIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQP--TVVFVSKKGLQKILNVQKKLPIIQKIIIMDS 154 (550)
T ss_dssp EEEEECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCC--SEEEECGGGHHHHHHHHHHCTTCCEEEETTC
T ss_pred EEEEEcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCC--eEEEEcHHHHHHHHHHHhhCCCcceEEEEcC
Confidence 99999999999999999999999999999999999999999999999 99999988766554321 1 23444333
Q ss_pred CCcccccCCCcccHHHhhcccCC------CC-CCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhccc
Q 037622 170 NLVNDFKEGRFSDFHKLIAGKFD------LV-ERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQY 242 (560)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~ 242 (560)
.. .......+.++...... .. ......++++++|+|||||||.||+|+++|+++...+........ .
T Consensus 155 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~--~ 228 (550)
T 3rix_A 155 KT----DYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF--G 228 (550)
T ss_dssp SS----CBTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTT--S
T ss_pred Cc----cccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhc--c
Confidence 21 12233344444332211 11 112224578999999999999999999999999887765543110 1
Q ss_pred ccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCC
Q 037622 243 EYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSL 322 (560)
Q Consensus 243 ~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l 322 (560)
..+.+++++++.+|++|.+++. ..+.++..|+++++.+.+++..+++.++++++|+++++|+++..|++. ......++
T Consensus 229 ~~~~~~~~~l~~~p~~~~~g~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~l 306 (550)
T 3rix_A 229 NQIIPDTAILSVVPFHHGFGMF-TTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKS-TLIDKYDL 306 (550)
T ss_dssp CCCCTTCEEEECSCTTSHHHHH-HHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHC-CGGGGSCC
T ss_pred ccCCCCcEEEEechHHHHHHHH-HHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhC-ccccccCc
Confidence 4577899999999999999985 677889999999999999999999999999999999999999999876 44455678
Q ss_pred CccceeecccCCCCHHHHHHHHHhCCCCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCC
Q 037622 323 KSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPP 402 (560)
Q Consensus 323 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~ 402 (560)
+++|.+++||+++++++.+++.+.|+...+++.||+||++.+++..... ....+++|+|+|+++++|+|++++++++.
T Consensus 307 ~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~~~~~~~~~i~d~~~~~~~~~ 384 (550)
T 3rix_A 307 SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG--DDKPGAVGKVVPFFEAKVVDLDTGKTLGV 384 (550)
T ss_dssp TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT--CCCTTEEEEECTTCEEEEECTTTCCBCCT
T ss_pred ccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCC--CCCCCCcccccCCcEEEEEeCCCCcCCCC
Confidence 9999999999999999999999999545699999999999877765433 34678999999999999999888999999
Q ss_pred CCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCc
Q 037622 403 GSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEI 482 (560)
Q Consensus 403 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v 482 (560)
|+.|||+|+|++++.||+++|+.|...|+.+|||+|||+|++++||+++++||.||+||++|++|+|.|||++|.++|+|
T Consensus 385 g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V 464 (550)
T 3rix_A 385 NQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNI 464 (550)
T ss_dssp TCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----------------------------
T ss_pred CCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCc
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEcccCCCCCceEEEEEEecCCCCCCHHHHHHHHHhccCCCCCcc-eEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 483 LDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVR-RVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 483 ~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~-~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
.+++|++.+++..++.++++|+..++...+.+++++++++++++++.|. .++++++||+|++||++|++|++.+.++
T Consensus 465 ~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 542 (550)
T 3rix_A 465 FDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKA 542 (550)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred ceEEEEEeecCCCCceEEEEEEecCCCCCCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHhh
Confidence 9999999999999999999999988877888999999999999887665 5999999999999999999999998653
No 8
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.1e-81 Score=660.15 Aligned_cols=496 Identities=27% Similarity=0.430 Sum_probs=428.7
Q ss_pred CCCCCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHh
Q 037622 39 DSLLDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYL 116 (560)
Q Consensus 39 ~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~ 116 (560)
+...|+.+++.++++ ++++|+++...+.++||+||.++++++|.+|.+ +|+++||+|+|+++|++++++++|||+++
T Consensus 13 ~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 91 (517)
T 3r44_A 13 DKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTA-LGIAKGDRVALLMPNSVEFCCLFYGAAKL 91 (517)
T ss_dssp GGGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHH-cCCCCcCEEEEEcCCCHHHHHHHHHHHHh
Confidence 345899999988774 679999987434599999999999999999999 79999999999999999999999999999
Q ss_pred CCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC-----CCEEEecCCCcccccCCCcccHHHhhcccC
Q 037622 117 GAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT-----TPVVAVPENLVNDFKEGRFSDFHKLIAGKF 191 (560)
Q Consensus 117 G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~-----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (560)
|++++|++|.++.+++.++++.+++ ++++++......+..... ..++.... ...+.+......
T Consensus 92 G~~~vpl~~~~~~~~l~~~l~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 159 (517)
T 3r44_A 92 GAVAVPINTRLAAPEVSFILSDSGS--KVVIYGAPSAPVIDAIRAQADPPGTVTDWIG----------ADSLAERLRSAA 159 (517)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTC--SEEEECGGGHHHHHHHHHSSSCCTTCCEEEE----------HHHHHHHHHHCC
T ss_pred CcEEEecCcccCHHHHHHHHHhcCc--eEEEECCchHHHHHHHHhccCCccEEEEccC----------cccHHHHhhccC
Confidence 9999999999999999999999999 999998876655433211 11111110 112333333333
Q ss_pred CCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHh
Q 037622 192 DLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLL 271 (560)
Q Consensus 192 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l 271 (560)
.........++++++|+|||||||.||+|+++|+++.+.+..... ...+.++|+++..+|++|..++...++..+
T Consensus 160 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~-----~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~ 234 (517)
T 3r44_A 160 ADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWAS-----TIDVRYRDRLLLPLPMFHVAALTTVIFSAM 234 (517)
T ss_dssp CCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHH-----HSCCCTTCEEEECSCTTSHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHH-----hcCCCCCCEEEEeCchHHHHHHHHHHHHHh
Confidence 333344567899999999999999999999999999998887766 467889999999999999999964455444
Q ss_pred hCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCe
Q 037622 272 SLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVD 351 (560)
Q Consensus 272 ~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~ 351 (560)
.|+++++.+.+++..+++.++++++|++.++|+++..|.+. ......+++++|.+++||+++++++.+.+.+. +++
T Consensus 235 -~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~ 310 (517)
T 3r44_A 235 -RGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQV-PEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIE 310 (517)
T ss_dssp -HTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHS-HHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCE
T ss_pred -cCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhC-cccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCc
Confidence 99999999999999999999999999999999999999876 44445678899999999999999999999987 899
Q ss_pred eecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccC
Q 037622 352 FIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTID 431 (560)
Q Consensus 352 i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~ 431 (560)
+++.||+||++..++...........+++|+|+++++++++| +++.+++.| .|||+|+|++++.||+++|+.|...|
T Consensus 311 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f- 387 (517)
T 3r44_A 311 VVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF- 387 (517)
T ss_dssp EEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTE-
T ss_pred EEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhh-
Confidence 999999999998776654444345678999999999999999 678888888 89999999999999999999999999
Q ss_pred CCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCC
Q 037622 432 KEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTL 511 (560)
Q Consensus 432 ~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 511 (560)
.+|||+|||+|++++||+++++||.||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.+++++ ..++...
T Consensus 388 ~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~~ 466 (517)
T 3r44_A 388 DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEV 466 (517)
T ss_dssp ETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTTC
T ss_pred cCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCCC
Confidence 689999999999999999999999999999999999999999999999999999999999998888888888 5566678
Q ss_pred CHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhccC
Q 037622 512 TEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSKL 560 (560)
Q Consensus 512 ~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~~ 560 (560)
+.++++++|+++|+.|++|+.++++++||+|++||++|++|++.+.+.+
T Consensus 467 ~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~ 515 (517)
T 3r44_A 467 SEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATV 515 (517)
T ss_dssp CHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGC
T ss_pred CHHHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhc
Confidence 8899999999999999999999999999999999999999999998764
No 9
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=2.7e-81 Score=673.75 Aligned_cols=548 Identities=24% Similarity=0.325 Sum_probs=444.1
Q ss_pred hhhhhhccCCCCCCCCCCCCCCceeccC-------CCCCCCCCCCCCCCHHHHHhccCC--CCceEEEEC----CCCcee
Q 037622 2 EKFLQTFSSERINTSQWYSPETGIYHSK-------HPSVNLPANDSLLDVDSFIFSHKH--NGRTALVDS----LSGYSI 68 (560)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~~----~~~~~~ 68 (560)
|+||.+.+... ..|.++.+.++... .+...|+.....-++++++.++++ ++++|++.. ..++++
T Consensus 38 ~~fw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~ 114 (663)
T 1ry2_A 38 AKFFGSKATQF---LNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDRHALKTPNKKAIIFEGDEPGQGYSI 114 (663)
T ss_dssp HHHHHHHHHHH---CCEEECCSCSBCBCSSSCSBCSTTCCBSTTCEECHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEE
T ss_pred HHHHHHHHhhc---CeeecCCceeecCccccccCCCCCCCcCCCCCccHHHHHHHHHhccCCCceEEEEEcCCCCceEEE
Confidence 56887776421 57888888877544 222567762223345566656544 679999962 235799
Q ss_pred cHHHHHHHHHHHHHHHH-HhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEE
Q 037622 69 SYPQLFPLVQSVASGLR-HHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAF 147 (560)
Q Consensus 69 Ty~el~~~v~~la~~L~-~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~ 147 (560)
||+||.++++++|++|. + +|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++.+++ ++++
T Consensus 115 TY~eL~~~v~~lA~~L~~~-~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~--~~li 191 (663)
T 1ry2_A 115 TYKELLEEVCQVAQVLTYS-MGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDS--KVVI 191 (663)
T ss_dssp EHHHHHHHHHHHHHHHHHT-SCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTC--SEEE
T ss_pred EHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCC--eEEE
Confidence 99999999999999998 7 899999999999999999999999999999999999999999999999999999 8899
Q ss_pred eeccchH---------Hhhhc----CC-CCEEEecCCCc--ccccCCCcccHHHhhcccCCCCCCCCCCCCCEEEEEcCC
Q 037622 148 TIYENVD---------KLRSW----GT-TPVVAVPENLV--NDFKEGRFSDFHKLIAGKFDLVERPVIRQQDTAAILYSS 211 (560)
Q Consensus 148 ~~~~~~~---------~~~~~----~~-~~vi~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TS 211 (560)
+++.... .+.+. .. ..+++++.... ..........+.++..............++++++|+|||
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTS 271 (663)
T 1ry2_A 192 TTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTS 271 (663)
T ss_dssp EESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEEC
T ss_pred EccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccccCCCccccHHHHHhhcCCCCCccccCCCCceEEEecc
Confidence 8776421 11111 11 23455443210 011112234466655543332333456789999999999
Q ss_pred CCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCC----cCHHH
Q 037622 212 GTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRR----FEASE 287 (560)
Q Consensus 212 GTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~ 287 (560)
||||.||||+++|.+++......... .+.+.++|++++..|++|+.+..+.++.+|..|+++++.+. +++..
T Consensus 272 GTTG~PKgV~~sh~~~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~ 347 (663)
T 1ry2_A 272 GSTGAPKGVQHSTAGYLLGALLTMRY----TFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSR 347 (663)
T ss_dssp CSSSSCEEEEECSHHHHHHHHHHHHH----HSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTH
T ss_pred CCCCCCceEEEchhHHHHHHHHHHHH----hcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHH
Confidence 99999999999999988665433221 46788999999999999999987788899999999999874 57899
Q ss_pred HHHHHHHhCcceeccCcHHHHHHHHhhhc-cCCCCCCccceeecccCCCCHHHHHHHHHhCC--CCeeecccchhhcccc
Q 037622 288 MLKVIDKYGVTHFPVVPPILMALTKAAKG-LCGNSLKSLKQVSSGAAPANSKIIEDFVGAFP--HVDFIQGYGMTESTAV 364 (560)
Q Consensus 288 ~~~~l~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~--~~~i~~~YG~tE~~~~ 364 (560)
+++.++++++|+++++|++++.|.+.... ....++++||.+++|||++++++++++.+.++ ++++++.||+||++..
T Consensus 348 ~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~ 427 (663)
T 1ry2_A 348 YWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSH 427 (663)
T ss_dssp HHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSC
T ss_pred HHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCe
Confidence 99999999999999999999999865221 23457899999999999999999999999883 2899999999999976
Q ss_pred cccCCC-CCCCCcccccccccCCeEEEEEeCCCCccCCC-CCcceEEEec--ccchhhhcCCchhhhhccC--CCCceec
Q 037622 365 GTRGFN-TKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPP-GSTGELWLRG--PGTMKEYINNADATMSTID--KEGWLHT 438 (560)
Q Consensus 365 ~~~~~~-~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~-g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~--~~~~~~T 438 (560)
++.... .....+++++|+|+||++++|+|++++++++. |+.|||+|+| |+++.|||++|+.+.+.+. .+|||+|
T Consensus 428 ~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~T 507 (663)
T 1ry2_A 428 LVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFT 507 (663)
T ss_dssp SEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEE
T ss_pred eeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEc
Confidence 665433 22345678999999999999999658999988 9999999999 5899999999999887763 3789999
Q ss_pred CceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCC---C----
Q 037622 439 GDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGST---L---- 511 (560)
Q Consensus 439 GD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---~---- 511 (560)
||+|++|+||+++++||+||+||++|++|++.|||++|.++|.|.+++|++.+++..|+.++++|++.++.. .
T Consensus 508 GDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~ 587 (663)
T 1ry2_A 508 GDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDE 587 (663)
T ss_dssp EEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------
T ss_pred CCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccchh
Confidence 999999999999999999999999999999999999999999999999999999888999999999876643 2
Q ss_pred ---CHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 512 ---TEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 512 ---~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
..++|+++|+++|++|++|+.|+++++||+|++|||+|++|++.+.++
T Consensus 588 ~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 588 LQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCC
Confidence 257899999999999999999999999999999999999999977553
No 10
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=2.5e-80 Score=648.59 Aligned_cols=484 Identities=25% Similarity=0.352 Sum_probs=417.2
Q ss_pred CCHHHHHhccC--CCCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHK--HNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~--~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.|+.++|.+++ .++++|+++...++++||+||.++++++|++|.+ +|+++||+|+|+++|++++++++|||+++|++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 80 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHA-DGLRPQQRVAVVAPNSADVVIAILALHRLGAV 80 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHHHTCE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcE
Confidence 57888888766 4679999986556899999999999999999999 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEe--eccchHHh-hhcCCCCEEEecCCCcccccCCCcccHHHhhccc-----C
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFT--IYENVDKL-RSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGK-----F 191 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~--~~~~~~~~-~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 191 (560)
++|++|.++.+++.++++.+++ +++++ +......+ .......++.++ ++.... .
T Consensus 81 ~vpl~~~~~~~~l~~~l~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~ 142 (504)
T 1t5h_X 81 PALLNPRLKSAELAELIKRGEM--TAAVIAVGRQVADAIFQSGSGARIIFLG----------------DLVRDGEPYSYG 142 (504)
T ss_dssp EEEECTTSCHHHHHHHHHHTTC--SEEEECC--CHHHHHHHHCCCCEEEEGG----------------GTEETTEECCCS
T ss_pred EEecCCccChHHHHHHHhhcCC--cEEEEecchhhhhhhhhccccceeEEec----------------chhhcCcccccC
Confidence 9999999999999999999999 88888 66554444 222212222221 111110 1
Q ss_pred CCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccC--CCCcEEEEecChhhHHhHHHHHHH
Q 037622 192 DLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYL--SSEAVFLAVLPMFHIYGLSLFALG 269 (560)
Q Consensus 192 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~~~~~ 269 (560)
.........++++++|+|||||||.||+|+++|+++.+.+..... ..++ .+.+++++.+|++|.+++...++.
T Consensus 143 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~ 217 (504)
T 1t5h_X 143 PPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST-----QVGLRHGRHNVVLGLMPLYHVVGFFAVLVA 217 (504)
T ss_dssp CCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHH-----TTCCCSSTTCEEEECSCTTSHHHHTTTHHH
T ss_pred CccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHH-----hhCCCCCCCceEEeecchhhcchHHHHHHH
Confidence 111113456789999999999999999999999999988777655 3455 788999999999999998667889
Q ss_pred HhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhc-cCCCCCCccceeecccCCCCHHHHHHHHHhCC
Q 037622 270 LLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKG-LCGNSLKSLKQVSSGAAPANSKIIEDFVGAFP 348 (560)
Q Consensus 270 ~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~-~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~ 348 (560)
++..|+++++.+.+++..+++.++++++|+++++|+++..|++.... ....+++++|.+++||+++++++.+++.+.+
T Consensus 218 ~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~- 296 (504)
T 1t5h_X 218 ALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL- 296 (504)
T ss_dssp HHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHC-
T ss_pred HHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhc-
Confidence 99999999999999999999999999999999999999999876312 2445688999999999999999999999999
Q ss_pred CCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCC---ccCCCCCcceEEEe-cccchhhhcCCch
Q 037622 349 HVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNG---CFLPPGSTGELWLR-GPGTMKEYINNAD 424 (560)
Q Consensus 349 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~---~~~~~g~~Gel~v~-~~~~~~gy~~~~~ 424 (560)
+.++++.||+||++...... ..+.+++|.|.++++++++|. ++ ++++.|+.|||+|+ |+.++.||+++|+
T Consensus 297 ~~~~~~~YG~TE~~~~~~~~-----~~~~~~~g~p~~~~~~~i~~~-~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~ 370 (504)
T 1t5h_X 297 PGEKVNIYGTTEAMNSLYMR-----QPKTGTEMAPGFFSEVRIVRI-GGGVDEIVANGEEGELIVAASDSAFVGYLNQPQ 370 (504)
T ss_dssp CSEEEEEEEETTTEEEEEEE-----SCSSSSEEBCCTTCCEEEECT-TSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHH
T ss_pred Ccceeeeecccccccccccc-----CCCCCccccCCCCCceeEEec-cCCCCCcCCCCCcceEEEeCCceeeceecCCch
Confidence 78999999999994322211 235678999999999999994 45 89999999999999 8999999999999
Q ss_pred hhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEE
Q 037622 425 ATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVV 504 (560)
Q Consensus 425 ~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~ 504 (560)
.|.+.| .+|||+|||+|++++||+++++||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..|+.++++|+
T Consensus 371 ~t~~~f-~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv 449 (504)
T 1t5h_X 371 ATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVV 449 (504)
T ss_dssp HHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEE
T ss_pred hhhhhh-cCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEE
Confidence 999999 6899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHh-ccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHh
Q 037622 505 RRDGSTLTEAAVIDYLAQ-RVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLT 557 (560)
Q Consensus 505 ~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~ 557 (560)
+.++...+.+++++++++ +|+.|++|+.++++++||+|++|||+|++|++.+.
T Consensus 450 ~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 450 PRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp ECTTCCCCHHHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred ecCCcCcCHHHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 988777888999999999 99999999999999999999999999999999875
No 11
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=8e-80 Score=653.24 Aligned_cols=498 Identities=26% Similarity=0.375 Sum_probs=406.0
Q ss_pred CCHH-HHHhccC--CCCceEEEEC---CCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 037622 42 LDVD-SFIFSHK--HNGRTALVDS---LSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLY 115 (560)
Q Consensus 42 ~~~~-~~~~~~~--~~~~~a~~~~---~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~ 115 (560)
.|+. ++|.+++ .++++|++.. ..++++||+||.++++++|++|.+ +|+++||+|+|+++|++++++++|||++
T Consensus 55 ~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~-~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~ 133 (580)
T 3etc_A 55 FNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVK-HGIGKGDYVMLTLKSRYDFWYCMLGLHK 133 (580)
T ss_dssp CCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECTTCTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHh
Confidence 5555 7776665 4679999852 124699999999999999999999 8999999999999999999999999999
Q ss_pred hCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccch--HHhhhc----CC--CCEEEecCCCcccccCCCcccHHHhh
Q 037622 116 LGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENV--DKLRSW----GT--TPVVAVPENLVNDFKEGRFSDFHKLI 187 (560)
Q Consensus 116 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~--~~~~~~----~~--~~vi~~~~~~~~~~~~~~~~~~~~~~ 187 (560)
+|++++|+++.++.+++.++++.+++ ++++++.+.. ..+... .. ..++.++... ...+..+.+.+
T Consensus 134 ~Gav~vpl~~~~~~~~l~~~l~~~~~--~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 206 (580)
T 3etc_A 134 LGAIAVPATHMLKTRDIVYRIEKAGL--KMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDV-----LEGWIDFRKEL 206 (580)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHTC--CEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSC-----CTTCEEHHHHH
T ss_pred CCEEEEeCCccCCHHHHHHHHHhcCC--CEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCcc-----ccccccHHHHH
Confidence 99999999999999999999999999 8888877643 322221 11 2344443321 23445565555
Q ss_pred cccCCCCCC----CCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhH
Q 037622 188 AGKFDLVER----PVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGL 263 (560)
Q Consensus 188 ~~~~~~~~~----~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~ 263 (560)
......... ....++|+++|+|||||||.||+|.++|.++...+..... ...+.++++++...|+.|..+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 281 (580)
T 3etc_A 207 EESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKY-----WQNVEDDGLHYTVADSGWGKCV 281 (580)
T ss_dssp HHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHT-----TSCCCTTCEEEECCCTTSTHHH
T ss_pred hhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHH-----hhCCCCCceEEEeCChHHHHHH
Confidence 443332221 2457899999999999999999999999988876655443 4678889999999999999888
Q ss_pred HHHHHHHhhCCCEEEEe--CCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHH
Q 037622 264 SLFALGLLSLGPSVVVM--RRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIE 341 (560)
Q Consensus 264 ~~~~~~~l~~G~~~v~~--~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~ 341 (560)
...++.++..|+++++. ..+++..+++.++++++|+++++|++++.|.+. .....++++||.+++|||++++++.+
T Consensus 282 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~--~~~~~~l~~lr~i~~gGe~l~~~~~~ 359 (580)
T 3etc_A 282 WGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE--DLSHYNFSTLKYAVVAGEPLNPEVFN 359 (580)
T ss_dssp HHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS--CC---CCTTCCEEEECSSCCCHHHHH
T ss_pred HHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc--ccccCCCccceEEEEccCCCCHHHHH
Confidence 66688899999999987 468999999999999999999999999999864 33456789999999999999999999
Q ss_pred HHHHhCCCCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEec-----ccch
Q 037622 342 DFVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRG-----PGTM 416 (560)
Q Consensus 342 ~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~-----~~~~ 416 (560)
+|.+.+ ++++++.||+||++.+++..... ..+++++|+|+|+++++|+| +++++++.|+.|||+|+| ++++
T Consensus 360 ~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~v~ivd-~~g~~~~~g~~GEl~v~~~~g~~~~~~ 435 (580)
T 3etc_A 360 RFLEFT-GIKLMEGFGQTETVVTIATFPWM--EPKPGSIGKPTPGYKIELMD-RDGRLCEVGEEGEIVINTMEGKPVGLF 435 (580)
T ss_dssp HHHHHH-SCCCEEEECCTTSSCCEECCTTS--CCCTTCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEECTTCCCTTCC
T ss_pred HHHHHh-CCeEecccccccccceeecCCCC--CCCCCccccCCCCCEEEEEC-CCCCCCCCCCceEEEEecCCCCCCeee
Confidence 999988 89999999999998776654322 34678999999999999999 579999999999999997 7899
Q ss_pred hhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCC
Q 037622 417 KEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLG 496 (560)
Q Consensus 417 ~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~ 496 (560)
.||+++|+.|.+.| .+|||+|||+|++|+||+++++||+||+||++|++|+|.|||++|.++|+|.+++|++.+++..|
T Consensus 436 ~gY~~~p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g 514 (580)
T 3etc_A 436 VHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRG 514 (580)
T ss_dssp CEETTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTE
T ss_pred ccccCCHhHHHhhc-CCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCC
Confidence 99999999999999 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEecCCCCCC---HHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 497 EIPVAFVVRRDGSTLT---EAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 497 ~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
+.++++|++.++.... .++|+++++++|++|++|+.++++++||+|++|||+|++||+++.++
T Consensus 515 ~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~~q 580 (580)
T 3etc_A 515 QVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQSQ 580 (580)
T ss_dssp EEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC---------------------
T ss_pred cEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhhcC
Confidence 9999999998775443 46899999999999999999999999999999999999999988764
No 12
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=3.9e-80 Score=695.48 Aligned_cols=528 Identities=37% Similarity=0.608 Sum_probs=358.2
Q ss_pred CceeccCCCCCCCCCCCCCCCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEc
Q 037622 23 TGIYHSKHPSVNLPANDSLLDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLL 100 (560)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~ 100 (560)
..+|.++.+...+|. ..|++++|.++++ ++++|+++..+++++||+||.++++++|++|.+ +|+++||+|+|++
T Consensus 45 ~~~~~~~~~~~~~p~---~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~ 120 (979)
T 3tsy_A 45 DVIFRSKLPDIYIPN---HLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHK-LGVNQNDVVMLLL 120 (979)
T ss_dssp CCCBCCSSCCCCCCT---TSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEEC
T ss_pred CceeecCCCCCCCCC---CCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHH-cCCCCcCEEEEEe
Confidence 446666666555542 3799999999886 569999998778999999999999999999999 8999999999999
Q ss_pred CCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhc---CCCCEEEecCCCcccccC
Q 037622 101 PNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSW---GTTPVVAVPENLVNDFKE 177 (560)
Q Consensus 101 ~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~---~~~~vi~~~~~~~~~~~~ 177 (560)
+|++++++++|||+++|++++|++|.++.+++.++++.+++ ++++++......+... ....++.++..... ...
T Consensus 121 ~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 197 (979)
T 3tsy_A 121 PNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNT--KLIITEARYVDKIKPLQNDDGVVIVCIDDNESV-PIP 197 (979)
T ss_dssp SSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTE--EEEEECSTTTTTSHHHHHTSCCEEEECCCCTTS-CCC
T ss_pred CCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCC--eEEEEChHHHHHHHHHhhcCCceEEEeCCcccc-cCC
Confidence 99999999999999999999999999999999999999999 9999988765544332 22344444432110 011
Q ss_pred CCcccHHHhhcccCC---CCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEe
Q 037622 178 GRFSDFHKLIAGKFD---LVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAV 254 (560)
Q Consensus 178 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (560)
.....+.++...... ........++++++|+|||||||.||+|+++|+++...+........ ....+.++|++++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~-~~~~~~~~d~~l~~ 276 (979)
T 3tsy_A 198 EGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGEN-PNLYFHSDDVILCV 276 (979)
T ss_dssp TTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSS-CSSCCCSSCEEEEC
T ss_pred cccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhc-ccccCCCCCEEEEE
Confidence 222334444332221 22334567899999999999999999999999999988766543111 02457789999999
Q ss_pred cChhhHHhHHHHHHHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCC
Q 037622 255 LPMFHIYGLSLFALGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAP 334 (560)
Q Consensus 255 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~ 334 (560)
+|++|.+++...++.++..|+++++.+++++..+++.++++++|++.++|+++..|++. ......+++++|.+++||++
T Consensus 277 ~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~l~~lr~~~~gg~~ 355 (979)
T 3tsy_A 277 LPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKS-SETEKYDLSSIRVVKSGAAP 355 (979)
T ss_dssp SCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHC-GGGGTSCCTTCCEEEESSCC
T ss_pred CchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhC-ccccCCCccceEEEEEcCCC
Confidence 99999999977788999999999999999999999999999999999999999999886 45556778999999999999
Q ss_pred CCHHHHHHHHHhCCCCeeecccchhhcccccccCCC---CCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEe
Q 037622 335 ANSKIIEDFVGAFPHVDFIQGYGMTESTAVGTRGFN---TKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLR 411 (560)
Q Consensus 335 ~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~---~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~ 411 (560)
+++++.+++.+.||++++++.||+||++.+++.... .......+++|+|+|+++++|+|++++++++.|+.|||+|+
T Consensus 356 l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~ 435 (979)
T 3tsy_A 356 LGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIR 435 (979)
T ss_dssp CCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEE
T ss_pred CCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEE
Confidence 999999999999999999999999999977654321 22234678899999999999999888999999999999999
Q ss_pred cccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEccc
Q 037622 412 GPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAM 491 (560)
Q Consensus 412 ~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~ 491 (560)
|++++.||+++|+.|.+.|+.+|||+|||+|++++||+++++||+||+||++|++|+|.|||++|.++|+|.+++|++.+
T Consensus 436 g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~ 515 (979)
T 3tsy_A 436 GHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMK 515 (979)
T ss_dssp STTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC---------------------------------
T ss_pred CCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEecCCCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 492 DKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 492 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
++..++.++++|+..++...+.++++++++++|+.|++|+.++++++||+|++||++|++|++.+.+.
T Consensus 516 ~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 583 (979)
T 3tsy_A 516 EEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANG 583 (979)
T ss_dssp --------------------------------------------------------------------
T ss_pred ccCCCcEEEEEEEECCCCCCCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhh
Confidence 99889999999998887777888999999999999999999999999999999999999999988764
No 13
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=2.6e-80 Score=653.81 Aligned_cols=495 Identities=24% Similarity=0.334 Sum_probs=332.3
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.|+.++|.++++ ++++|++++ ++++||+||.++++++|++|.+ +|+++||+|+|+++|++++++++|||+++|++
T Consensus 30 ~tl~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav 106 (544)
T 3o83_A 30 QPLTRILTVGVQSHPHSLAIICG--ERQLSYIELDRLSTNLATRLAE-KGLGKGDTALVQLPNVAEFYIVFFALLKAGVV 106 (544)
T ss_dssp CCTTHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred CCHHHHHHHHHHhCCCceEEEcC--CCceeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEECCCCHHHHHHHHHHHHhCcE
Confidence 688888887764 679999998 8999999999999999999999 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccch--------HHhhhcC-C-CCEEEecCCCcccccCCCcccHHHhhcc
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENV--------DKLRSWG-T-TPVVAVPENLVNDFKEGRFSDFHKLIAG 189 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~--------~~~~~~~-~-~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 189 (560)
++|+++.++.+++.++++.+++ ++++++.... ..+.... . ..++..+... ....+.+....
T Consensus 107 ~vpl~~~~~~~~l~~~l~~~~~--~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 177 (544)
T 3o83_A 107 VLNALYSHRQYELNAFIKQIQP--KLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQA-------TDFGLLDWIET 177 (544)
T ss_dssp EEECCTTCCHHHHHHHHHHHCC--SEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCT-------TSEEHHHHHHS
T ss_pred EecCCCCCCHHHHHHHHHhcCe--eEEEEccccccccHHHHHHHHhhcccCcceEEEecCCc-------cccchhhhhhc
Confidence 9999999999999999999999 8888877542 1221111 1 2233333211 11123333322
Q ss_pred cCCC-CCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHH-HH
Q 037622 190 KFDL-VERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSL-FA 267 (560)
Q Consensus 190 ~~~~-~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~ 267 (560)
.... .......++++++|+|||||||.||+|+++|.++.+.+..... ...+.++|++++++|++|.+++.. .+
T Consensus 178 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~-----~~~~~~~d~~l~~~p~~h~~~~~~~~~ 252 (544)
T 3o83_A 178 PAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAE-----ICGLNSNTRLLCALPAPHNFMLSSPGA 252 (544)
T ss_dssp CCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHH-----HTTCCTTCEEEECSCTTSHHHHHSSHH
T ss_pred ccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHH-----HhCCCCCCeEEEecCcceEeecchHHH
Confidence 2221 1224456899999999999999999999999999998888776 567889999999999999998864 58
Q ss_pred HHHhhCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhC
Q 037622 268 LGLLSLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAF 347 (560)
Q Consensus 268 ~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~ 347 (560)
+.++..|+++++.+.+++..+++.++++++|++.++|+++..+++. ......+++++|.+++||+++++++.+++.+.+
T Consensus 253 ~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~ 331 (544)
T 3o83_A 253 LGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEK-AAQYKDQIQSLKLLQVGGASFPESLARQVPEVL 331 (544)
T ss_dssp HHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHH-HTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHH
T ss_pred HHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhc-hhhccccCCcceEEEEcCCCCCHHHHHHHHHHh
Confidence 8899999999999999999999999999999999999999999876 333345678999999999999999999999998
Q ss_pred CCCeeecccchhhcccccccCCCCCCCCccccccccc-CCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhh
Q 037622 348 PHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLA-PNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADAT 426 (560)
Q Consensus 348 ~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~-p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~ 426 (560)
++++++.||+||++..++... .......+++|+|+ ++++++|+| +++++++.|+.|||+|+||+++.||+++|+.|
T Consensus 332 -~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t 408 (544)
T 3o83_A 332 -NCKLQQVFGMAEGLVNYTRLD-DSDEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHN 408 (544)
T ss_dssp -CSEEEEEEECTTSCEEECCTT-SCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHHHH
T ss_pred -CCcEEeeeccccccceeecCC-CchhhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChhhh
Confidence 899999999999886554322 22223457899996 899999999 78999999999999999999999999999999
Q ss_pred hhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEec
Q 037622 427 MSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRR 506 (560)
Q Consensus 427 ~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 506 (560)
...|+.+|||+|||+|++++||+++++||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..|+.++++++..
T Consensus 409 ~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~ 488 (544)
T 3o83_A 409 SQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSR 488 (544)
T ss_dssp HHHBCTTCCEEEEEEEEECTTSCEEEEEEEC-------------------------------------------------
T ss_pred hhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeC
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCCCHHHHHHHHHh-ccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 507 DGSTLTEAAVIDYLAQ-RVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 507 ~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
+ ...+.+++++++++ +|+.|++|+.++++++||+|++||++|++|++.+.+
T Consensus 489 ~-~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 540 (544)
T 3o83_A 489 N-PELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNT 540 (544)
T ss_dssp -----------------------------------------------------
T ss_pred C-CCCCHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhh
Confidence 6 35667789999998 799999999999999999999999999999998865
No 14
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=2.9e-78 Score=647.41 Aligned_cols=495 Identities=25% Similarity=0.362 Sum_probs=429.4
Q ss_pred CCHHHHHhccCCCCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEe
Q 037622 42 LDVDSFIFSHKHNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVI 121 (560)
Q Consensus 42 ~~~~~~~~~~~~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v 121 (560)
.|++++|.++++++++|++++ ++++||+||.++++++|++|.+ .|+++||+|+|+++|++++++++|||+++|++++
T Consensus 27 ~~l~~~~~~~a~pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~~v 103 (617)
T 3rg2_A 27 LPLTDILTRHAASDSIAVIDG--ERQLSYRELNQAADNLACSLRR-QGIKPGETALVQLGNVAELYITFFALLKLGVAPV 103 (617)
T ss_dssp CCTTHHHHTTTTCCSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEE
T ss_pred CCHHHHHHHhhCCCCeEEecC--CceEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCcHHHHHHHHHHHhcCeEEc
Confidence 789999999999999999998 8999999999999999999999 7999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHhcCCceEEEEeeccch--------HHhh-hcCCCCEEEecCCCcccccCCCcccHHHhhcccCC
Q 037622 122 PMNPLLSVSEIKKQVTLCKTKISLAFTIYENV--------DKLR-SWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFD 192 (560)
Q Consensus 122 ~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~--------~~~~-~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (560)
|+++.++.+++.++++.+++ ++++++.... ..+. .......+...... ....+.+.......
T Consensus 104 pl~~~~~~~~l~~~l~~~~~--~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 174 (617)
T 3rg2_A 104 LALFSHQRSELNAYASQIEP--ALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDS-------GEHNLQDAINHPAE 174 (617)
T ss_dssp EECTTCCHHHHHHHHHHHCC--SEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCC-------STTBHHHHHHSCCS
T ss_pred cCCccccHHHHHHHHhhcCc--eEEEecccccccccHHHHHHHhhcCCccceeeecccc-------cccchhhhhccccc
Confidence 99999999999999999999 8888887543 1111 11222333322211 11223333333333
Q ss_pred CCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHH-HHHHHh
Q 037622 193 LVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSL-FALGLL 271 (560)
Q Consensus 193 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~~~l 271 (560)
........++++++|+|||||||.||+|+++|+++.+.+..... ...+.+++++++++|++|.+++.. .++.++
T Consensus 175 ~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~-----~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l 249 (617)
T 3rg2_A 175 DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE-----ICQFTQQTRYLCAIPAAHNYAMSSPGSLGVF 249 (617)
T ss_dssp SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH-----HHTCCTTCEEEECSCTTSHHHHHSSHHHHHH
T ss_pred ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHH-----hcCCCCcceEEEeccchhhhhhhHHHHHHHH
Confidence 33344556899999999999999999999999999998887766 467889999999999999998854 688899
Q ss_pred hCCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhcc-CCCCCCccceeecccCCCCHHHHHHHHHhCCCC
Q 037622 272 SLGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGL-CGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHV 350 (560)
Q Consensus 272 ~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~ 350 (560)
..|+++++.+..++..+++.++++++|++.++|+++..+++..... ....++++|.+++|||++++++.+++.+.+ ++
T Consensus 250 ~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~ 328 (617)
T 3rg2_A 250 LAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GC 328 (617)
T ss_dssp HHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CS
T ss_pred HcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh-CC
Confidence 9999999999899999999999999999999999999998753221 223688999999999999999999999998 89
Q ss_pred eeecccchhhcccccccCCCCCCCCccccccccc-CCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhc
Q 037622 351 DFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLA-PNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMST 429 (560)
Q Consensus 351 ~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~-p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~ 429 (560)
++++.||+||++..++... ........++|.|+ ++.++.|+| +++++++.|+.|||+|+|++++.||+++|+.|.+.
T Consensus 329 ~~~~~YG~tE~~~~~~~~~-~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~ 406 (617)
T 3rg2_A 329 QLQQVFGMAEGLVNYTRLD-DSAEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASA 406 (617)
T ss_dssp EEEEEEEETTEEEEECCTT-SCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHH
T ss_pred cEEEEeccCcceeecccCC-CcccccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchhcCChhhhhhc
Confidence 9999999999986655332 22223356889997 788999999 78999999999999999999999999999999999
Q ss_pred cCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCC
Q 037622 430 IDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGS 509 (560)
Q Consensus 430 ~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 509 (560)
|+.++||+|||+|++++||.++++||.||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.++++++..+
T Consensus 407 f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~-- 484 (617)
T 3rg2_A 407 FDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE-- 484 (617)
T ss_dssp BCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS--
T ss_pred cCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999888899999999876
Q ss_pred CCCHHHHHHHHHh-ccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 510 TLTEAAVIDYLAQ-RVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 510 ~~~~~~l~~~~~~-~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
..+.+++++++++ .|+.|++|..++++++||+|++||+||++|++.+.+
T Consensus 485 ~~~~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~ 534 (617)
T 3rg2_A 485 PLRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLAS 534 (617)
T ss_dssp CCCHHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhc
Confidence 4678899999998 699999999999999999999999999999998754
No 15
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=7e-80 Score=650.06 Aligned_cols=499 Identities=27% Similarity=0.415 Sum_probs=385.0
Q ss_pred CCHHHHHhccC--CCCceEEEEC--CCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhC
Q 037622 42 LDVDSFIFSHK--HNGRTALVDS--LSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLG 117 (560)
Q Consensus 42 ~~~~~~~~~~~--~~~~~a~~~~--~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G 117 (560)
.|+.++|.+++ .++++|++.. ..++++||+||.++++++|++|.+ +|+++||+|+|+++|++++++++|||+++|
T Consensus 18 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G 96 (541)
T 1v25_A 18 LNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRA-LGVGVGDRVATLGFNHFRHLEAYFAVPGMG 96 (541)
T ss_dssp CCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHHhcC
Confidence 68888888766 4679999852 235799999999999999999999 899999999999999999999999999999
Q ss_pred CeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcC----C-CCEEEecCCCcccccCCCcccHHHhhcccCC
Q 037622 118 AIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWG----T-TPVVAVPENLVNDFKEGRFSDFHKLIAGKFD 192 (560)
Q Consensus 118 ~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~----~-~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (560)
++++|++|.++.+++.++++.+++ +++++++.....+.... . ..++.++... ......+.+++.....
T Consensus 97 av~vpl~~~~~~~~l~~~l~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 169 (541)
T 1v25_A 97 AVLHTANPRLSPKEIAYILNHAED--KVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKA-----PEGYLAYEEALGEEAD 169 (541)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTC--SEEEECGGGHHHHHHHGGGCSSCCEEEESSSCC-----CTTCEEHHHHCCSCCC
T ss_pred cEEEecCcccCHHHHHHHHHhCCC--cEEEEChhHHHHHHHHHhhCCCccEEEEecCCC-----CcccccHHHHhhccCC
Confidence 999999999999999999999999 99999887655543321 1 2234433321 1122345554433222
Q ss_pred CCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhh
Q 037622 193 LVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLS 272 (560)
Q Consensus 193 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~ 272 (560)
. ....++++++|+|||||||.||+|+++|+++.......... ....++++|++++.+|++|.+++. ..+.++.
T Consensus 170 ~---~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~~~d~~l~~~p~~h~~~~~-~~~~~l~ 242 (541)
T 1v25_A 170 P---VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLV---DGTALSEKDVVLPVVPMFHVNAWC-LPYAATL 242 (541)
T ss_dssp C---CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTST---TTTCCCTTCEEEECSCTTSHHHHT-HHHHHHH
T ss_pred c---ccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhc---ccccCCCCCEEEEeccchhhhHHH-HHHHHHh
Confidence 1 34467899999999999999999999999998765542110 135678899999999999999984 6778899
Q ss_pred CCCEEEEeCC-cCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCe
Q 037622 273 LGPSVVVMRR-FEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVD 351 (560)
Q Consensus 273 ~G~~~v~~~~-~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~ 351 (560)
.|+++++.+. +++..+++.++++++|+++++|+++..|++. ......+++++|.+++||+++++++.+++ +.+ +++
T Consensus 243 ~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~ 319 (541)
T 1v25_A 243 VGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADY-LESTGHRLKTLRRLVVGGSAAPRSLIARF-ERM-GVE 319 (541)
T ss_dssp HTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHH-HHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHT-TCE
T ss_pred cCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhh-hhccCCcchhccEEEECCCCCCHHHHHHH-HHh-CCc
Confidence 9999999874 7999999999999999999999999999876 33335578899999999999999999999 666 899
Q ss_pred eecccchhhcccccccCCCCCC---------CCcccccccccCCeEEEEEeCCCCccCCC--CCcceEEEecccchhhhc
Q 037622 352 FIQGYGMTESTAVGTRGFNTKK---------FSKYFSVGLLAPNIQAKVVDWVNGCFLPP--GSTGELWLRGPGTMKEYI 420 (560)
Q Consensus 352 i~~~YG~tE~~~~~~~~~~~~~---------~~~~~~~G~~~p~~~~~v~d~~~~~~~~~--g~~Gel~v~~~~~~~gy~ 420 (560)
+++.||+||++.+++....... ....+++|+|+|+++++|+| +++++++. ++.|||+|+||+++.||+
T Consensus 320 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~ 398 (541)
T 1v25_A 320 VRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYY 398 (541)
T ss_dssp EEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCB
T ss_pred eeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhcccc
Confidence 9999999999987765432210 12357899999999999999 57888874 368999999999999999
Q ss_pred CCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEE
Q 037622 421 NNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPV 500 (560)
Q Consensus 421 ~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 500 (560)
++|+.|.+.|..+|||+|||+|++|+||+++++||+||+||.+|++|+|.|||++|.+||+|.+++|++.+++..++.++
T Consensus 399 ~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~ 478 (541)
T 1v25_A 399 GNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPL 478 (541)
T ss_dssp TCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEE
T ss_pred CChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEE
Confidence 99999999998799999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred EEEEecCCCCCCHHHHHHHHHh-ccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhccC
Q 037622 501 AFVVRRDGSTLTEAAVIDYLAQ-RVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSKL 560 (560)
Q Consensus 501 ~~v~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~~ 560 (560)
++|++. +...+.+++++++++ +|+.|++|+.++++++||+|++||++|++|++.+.+.+
T Consensus 479 a~vv~~-~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 538 (541)
T 1v25_A 479 AVVVPR-GEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNYY 538 (541)
T ss_dssp ECC--------------------CCCTTTSCSBC--------------CCTTHHHHSTTSS
T ss_pred EEEEEC-CCCCCHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHhh
Confidence 999876 445667889999999 89999999999999999999999999999999987653
No 16
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=6e-79 Score=639.66 Aligned_cols=488 Identities=20% Similarity=0.263 Sum_probs=416.2
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
+|+.++|.++++ ++++|+++. ++++||+||.++++++|++|.+ .|+++||+|+|+++|++++++++|||+++|++
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v 77 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR--DAKITYKQLKEDSDALAHWISS-EYPDDRSPIMVYGHMQPEMIINFLGCVKAGHA 77 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HSTTCCCCEEEEESSCHHHHHHHHHHHHTTCC
T ss_pred CcHHHHHHHHHHHCCCceEEEeC--CceEEHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCE
Confidence 467788877764 679999997 7899999999999999999999 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhc--ccCCCCCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIA--GKFDLVERP 197 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 197 (560)
++|+++.++.+++.++++.+++ ++++++....... ........ ..+..... .........
T Consensus 78 ~vpl~~~~~~~~l~~il~~~~~--~~~i~~~~~~~~~-----~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 139 (512)
T 3fce_A 78 YIPVDLSIPADRVQRIAENSGA--KLLLSATAVTVTD-----LPVRIVSE-----------DNLKDIFFTHKGNTPNPEH 139 (512)
T ss_dssp EEEEETTSCHHHHHHHHHHSCC--CEEEESSCCCSSC-----CSSEEEET-----------HHHHHHHHHTTTCCCCGGG
T ss_pred EEeeCCCCcHHHHHHHHHhcCC--CEEEecCcccccc-----cccceech-----------hhhhhhcccccccCCCccc
Confidence 9999999999999999999999 8888764321100 11111110 01111111 111112223
Q ss_pred CCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEE
Q 037622 198 VIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSV 277 (560)
Q Consensus 198 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~ 277 (560)
...++++++|+|||||||.||+|+++|.++.+.+..... ...+.++|++++.+|++|..++. .++.++..|+++
T Consensus 140 ~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~-----~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~ 213 (512)
T 3fce_A 140 AVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVE-----DFNLQTGQVFLNQAPFSFDLSVM-DIYPSLVTGGTL 213 (512)
T ss_dssp SCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHH-----HTTCCSSCEEEECSCTTSGGGHH-HHHHHHHTTCEE
T ss_pred cCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHH-----hcCCCCCCEEEEeCCccHhHHHH-HHHHHHhCCCEE
Confidence 456799999999999999999999999999998887766 46788999999999999999984 788999999999
Q ss_pred EEeCC---cCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeec
Q 037622 278 VVMRR---FEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQ 354 (560)
Q Consensus 278 v~~~~---~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~ 354 (560)
++.+. +++..+++.++++++|++.++|+++..++.. .......++++|.+++||+++++++.+++.+.|+++++++
T Consensus 214 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~ 292 (512)
T 3fce_A 214 WAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLME-ASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMN 292 (512)
T ss_dssp EECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTS-TTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEE
T ss_pred EECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhh-ccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEe
Confidence 99886 7899999999999999999999999998876 4445567889999999999999999999999999999999
Q ss_pred ccchhhcccccccCCCCCC---CCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhcc-
Q 037622 355 GYGMTESTAVGTRGFNTKK---FSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTI- 430 (560)
Q Consensus 355 ~YG~tE~~~~~~~~~~~~~---~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~- 430 (560)
.||+||++.+++....... .....++|+|+++++++++| +++++++.|+.|||+|+||+++.||+++|+.|.+.|
T Consensus 293 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~ 371 (512)
T 3fce_A 293 TYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFT 371 (512)
T ss_dssp EECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEE
T ss_pred CcccChhhhheeeEEeccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccc
Confidence 9999999987664332211 23456899999999999999 789999999999999999999999999999999887
Q ss_pred --CCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCC
Q 037622 431 --DKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDG 508 (560)
Q Consensus 431 --~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 508 (560)
++++||+|||+|++ +||+++++||.||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.+++++++.++
T Consensus 372 ~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~ 450 (512)
T 3fce_A 372 MIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEH 450 (512)
T ss_dssp EETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSC
T ss_pred cCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCc
Confidence 45789999999999 899999999999999999999999999999999999999999999988888899999998776
Q ss_pred CCCCH----HHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 509 STLTE----AAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 509 ~~~~~----~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
..... ++++++|+++|+.|++|+.++++++||+|++||++|++|++.+.++
T Consensus 451 ~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~ 505 (512)
T 3fce_A 451 SFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTAL 505 (512)
T ss_dssp CCSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC-
T ss_pred cccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhc
Confidence 44433 5799999999999999999999999999999999999999998753
No 17
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1.1e-79 Score=644.75 Aligned_cols=487 Identities=29% Similarity=0.422 Sum_probs=321.8
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.|+.++|.++++ ++++|+++. ++++||+||.++++++|++|.+ +|+++||+|+|+++|++++++++|||+++|++
T Consensus 6 ~tl~~~l~~~a~~~pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 82 (509)
T 3ivr_A 6 FTLADVYRRNAALFPDRTAFMVD--GVRLTHRDYLARAERLASGLLR-DGVHTGDRVAILSQNCSEMIELIGAVALIGAI 82 (509)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHCCCceEEEEC--CcEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence 799999988875 679999997 8999999999999999999999 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhc----CC-CCEEEecCCCcccccCCCcccHHHhhc-ccCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSW----GT-TPVVAVPENLVNDFKEGRFSDFHKLIA-GKFDL 193 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~----~~-~~vi~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 193 (560)
++|++|.++.+++.++++.+++ ++++++......+... .. ..++.+++.. ..+.++.. .....
T Consensus 83 ~vpl~~~~~~~~l~~~l~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 151 (509)
T 3ivr_A 83 LLPVNYRLNADEIAFVLGDGAP--SVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGS---------GPFAPFKDLASDTP 151 (509)
T ss_dssp EEECCTTSCHHHHHHHHHHHCE--EEEEECSTTHHHHHHHGGGCSSCCEEEESSCCC---------SSCEEGGGTCCCSC
T ss_pred EEecCCCCCHHHHHHHHHhcCc--eEEEECcchhhhHHhhhcccCCceEEEEcCCCC---------cChhhHhhccCCCC
Confidence 9999999999999999999999 9999988765542221 11 2233333211 11111222 11222
Q ss_pred CCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhC
Q 037622 194 VERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSL 273 (560)
Q Consensus 194 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~ 273 (560)
.......++++++|+|||||||.||+|+++|+++...+..... ...++++|++++.+|++|.+++...+...+ .
T Consensus 152 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~-----~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~-~ 225 (509)
T 3ivr_A 152 FSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVD-----AWRLTEADVNLGMLPLFHVTGLGLMLTLQQ-A 225 (509)
T ss_dssp CCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHH-----HTTCCTTCEEEECSCTTSHHHHHHHHHHHH-H
T ss_pred CCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHH-----hhCCCCCcEEEEeCCCcchhHHHHHHHHHH-h
Confidence 3344567899999999999999999999999999998887776 467889999999999999999964444444 4
Q ss_pred CCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeee
Q 037622 274 GPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFI 353 (560)
Q Consensus 274 G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~ 353 (560)
|++.++...+++..+++.++++++|++.++|+++..+++.. ....++++|.++.+|++ ++.+.+.+.+|+++++
T Consensus 226 ~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~---~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~ 299 (509)
T 3ivr_A 226 GGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA---APAQLASLRAVTGLDTP---ETIERFEATCPNATFW 299 (509)
T ss_dssp TCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC---CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEE
T ss_pred CCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc---cccchhhhheecccCCh---HHHHHHHHhcCCCeEE
Confidence 55555555889999999999999999999999999998762 34567899999999987 8889999999999999
Q ss_pred cccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCC
Q 037622 354 QGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKE 433 (560)
Q Consensus 354 ~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~ 433 (560)
+.||+||++.+++...... ...++|+|+|+++++|+| +++++++.|+.|||+|+|++++.||+++|+.|...| .+
T Consensus 300 ~~YG~TE~~~~~~~~~~~~---~~~~~G~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~ 374 (509)
T 3ivr_A 300 ATFGQSETSGLSTFAPYRD---RPKSAGRPLFWRTVAVVD-AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RN 374 (509)
T ss_dssp EEEEEGGGTEEEEEEEGGG---STTSCCEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHT-GG
T ss_pred cccCccccccccccCcccc---CCCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEecCCccccccCCHHHhHHHh-hc
Confidence 9999999998776543322 334599999999999999 569999999999999999999999999999999999 48
Q ss_pred CceecCceEEEccCCcEEEEccc--cceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCC
Q 037622 434 GWLHTGDIAYFDEDGYLYIVDRL--KEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTL 511 (560)
Q Consensus 434 ~~~~TGD~~~~~~~g~l~~~GR~--~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 511 (560)
|||+|||+|++++||+++++||. +|+||++|++|+|.|||++|.++|+|.+++|++.+++..++.+++++++.++...
T Consensus 375 g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~ 454 (509)
T 3ivr_A 375 GWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESI 454 (509)
T ss_dssp GSEEEEEEEEECTTSCEEEEEEC---------------------------------------------------------
T ss_pred CCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCC
Confidence 99999999999999999999999 9999999999999999999999999999999999999889999999998888778
Q ss_pred CHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 512 TEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 512 ~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
+.++++++++++|+.|++|+.++++++||+|++|||+|++||+++.+.
T Consensus 455 ~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~ 502 (509)
T 3ivr_A 455 AADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQE 502 (509)
T ss_dssp ------------------------------------------------
T ss_pred CHHHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhc
Confidence 889999999999999999999999999999999999999999998753
No 18
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=1.6e-78 Score=635.92 Aligned_cols=487 Identities=19% Similarity=0.265 Sum_probs=419.2
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
+|+.++|.++++ ++++|+++. ++++||+||.++++++|++|.++.|.++|++|+++++|++++++++|||+++|++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 78 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ--GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHP 78 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCE
Confidence 367788877774 679999987 8999999999999999999987458889999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhcccCC-CCCCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFD-LVERPV 198 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 198 (560)
++|+++.++.+++.++++.+++ +++++++........ . ......+.++...... ......
T Consensus 79 ~vpl~~~~~~~~l~~~l~~~~~--~~li~~~~~~~~~~~---~--------------~~~~~~~~~~~~~~~~~~~~~~~ 139 (511)
T 3e7w_A 79 YIPVDLSIPSERIAKIIESSGA--ELLIHAAGLSIDAVG---Q--------------QIQTVSAEELLENEGGSVSQDQW 139 (511)
T ss_dssp EEEEETTSCHHHHHHHHHHHTC--CEEEESSSCCTTCCC---C--------------SSCEEEHHHHHTSCSCCCCGGGS
T ss_pred EEecCCCChHHHHHHHHHhCCC--CEEEecccccchhcc---c--------------ccceecHhhhhccccCCcccccc
Confidence 9999999999999999999999 888876543111000 0 0111223333332211 112234
Q ss_pred CCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEE
Q 037622 199 IRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVV 278 (560)
Q Consensus 199 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v 278 (560)
..++++++|+|||||||.||+|+++|.++.+.+..... ...+..+|++++.+|++|..++. .++.++..|++++
T Consensus 140 ~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~-----~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~~ 213 (511)
T 3e7w_A 140 VKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICA-----DFPVSGGKIFLNQAPFSFDLSVM-DLYPCLQSGGTLH 213 (511)
T ss_dssp CCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHH-----HSTTTTTCEEEECSCTTSTHHHH-HHHHHHHTTCEEE
T ss_pred CCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHH-----hcCCCccceEEEeCCccHHHHHH-HHHHHHhcCCEEE
Confidence 56789999999999999999999999999998887766 46788999999999999999984 7889999999999
Q ss_pred EeCC---cCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecc
Q 037622 279 VMRR---FEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQG 355 (560)
Q Consensus 279 ~~~~---~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~ 355 (560)
+.+. +++..+++.++++++|++.++|+++..++.. .......++++|.+++||+++++++.+++.+.||++++++.
T Consensus 214 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~ 292 (511)
T 3e7w_A 214 CVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMD-PGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNT 292 (511)
T ss_dssp ECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTS-TTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEC
T ss_pred EcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhc-cccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeC
Confidence 9876 6899999999999999999999999999876 44456678899999999999999999999999999999999
Q ss_pred cchhhcccccccCCCCC---CCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccC-
Q 037622 356 YGMTESTAVGTRGFNTK---KFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTID- 431 (560)
Q Consensus 356 YG~tE~~~~~~~~~~~~---~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~- 431 (560)
||+||++..++...... ......++|+|+|+++++|+| +++++++.|+.|||+|+||+++.||+++|+.|.+.|.
T Consensus 293 YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~ 371 (511)
T 3e7w_A 293 YGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFS 371 (511)
T ss_dssp CCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEE
T ss_pred cccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEEC-CCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcC
Confidence 99999998766433221 123456799999999999999 5799999999999999999999999999999998882
Q ss_pred --CCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCC
Q 037622 432 --KEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGS 509 (560)
Q Consensus 432 --~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 509 (560)
+..||+|||+|++ +||+++++||.||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.+++++++.++.
T Consensus 372 ~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~ 450 (511)
T 3e7w_A 372 HEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHE 450 (511)
T ss_dssp SSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCC
T ss_pred CCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEecccc
Confidence 2237999999999 6999999999999999999999999999999999999999999999888889999999988765
Q ss_pred CCCH----HHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 510 TLTE----AAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 510 ~~~~----~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
.... ++++++++++|+.|++|+.++++++||+|++|||+|++|++.+.+
T Consensus 451 ~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~ 503 (511)
T 3e7w_A 451 FEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLV 503 (511)
T ss_dssp CSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhh
Confidence 4443 679999999999999999999999999999999999999998865
No 19
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=6.6e-78 Score=637.73 Aligned_cols=494 Identities=22% Similarity=0.314 Sum_probs=419.6
Q ss_pred CHHHHHhccC-------CCCceEEEECC---CCceecHHHHHHHHHHHHHHHHHhh-CCCCCCEEEEEcCCCChHHHHHH
Q 037622 43 DVDSFIFSHK-------HNGRTALVDSL---SGYSISYPQLFPLVQSVASGLRHHF-GISQGDAVLLLLPNSIYFPVIFL 111 (560)
Q Consensus 43 ~~~~~~~~~~-------~~~~~a~~~~~---~~~~~Ty~el~~~v~~la~~L~~~~-g~~~gd~V~i~~~~~~~~~~~~l 111 (560)
++.+++.+++ .++++|+++.. .++++||+||.++++++|++|.+ . |+++||+|+|+++|++++++++|
T Consensus 39 ~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-~~Gv~~gd~V~i~~~n~~e~~~~~l 117 (570)
T 3c5e_A 39 FASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSG-ACGLQRGDRVAVVLPRVPEWWLVIL 117 (570)
T ss_dssp HHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHT-TTCCCTTCEEEEECCSCHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHH-ccCCCCCCEEEEEcCCCHHHHHHHH
Confidence 3456666544 46799998631 23789999999999999999998 7 99999999999999999999999
Q ss_pred HHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcC----CC-CEEEecCCCcccccCCCcccHHHh
Q 037622 112 ALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWG----TT-PVVAVPENLVNDFKEGRFSDFHKL 186 (560)
Q Consensus 112 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~----~~-~vi~~~~~~~~~~~~~~~~~~~~~ 186 (560)
||+++|++++|+++.++.+++.++++.+++ +++++++.....+.... .. .++.++... ......+.++
T Consensus 118 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 190 (570)
T 3c5e_A 118 GCIRAGLIFMPGTIQMKSTDILYRLQMSKA--KAIVAGDEVIQEVDTVASECPSLRIKLLVSEKS-----CDGWLNFKKL 190 (570)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTC--SEEEEETTTHHHHHHHGGGCTTCCEEEEESSSC-----CTTSEEHHHH
T ss_pred HHHHcCeEEEecCCCCCHHHHHHHHHhcCC--eEEEechHHHHHHHHHhhcCCceeEEEEecccC-----ccccccHHHH
Confidence 999999999999999999999999999999 99999887665554321 11 234443311 1223345555
Q ss_pred hcccCCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHH--HHHHHHHhhhcccccCCCCcEEEEecChhhHHhHH
Q 037622 187 IAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIA--AVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLS 264 (560)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~ 264 (560)
+.............++++++|+|||||||.||+|+++|. ++. ..... . ...+.++|++++..|++|..++.
T Consensus 191 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~-----~~~~~~~d~~~~~~p~~~~~~~~ 263 (570)
T 3c5e_A 191 LNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-G-----WTGLQASDIMWTISDTGWILNIL 263 (570)
T ss_dssp HHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-T-----TTSCCTTCEEEECCCTTSHHHHH
T ss_pred hhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-h-----hcCCCCCceEEEcCchHHHHHHH
Confidence 443333223344568999999999999999999999999 444 22222 2 46788999999999999999987
Q ss_pred HHHHHHhhCCCEEEEeC--CcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHH
Q 037622 265 LFALGLLSLGPSVVVMR--RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIED 342 (560)
Q Consensus 265 ~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~ 342 (560)
..++.++..|+++++.+ .+++..+++.++++++|+++++|++++.|.+. .....+++++|.+++||+++++++.++
T Consensus 264 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--~~~~~~~~~lr~i~~gGe~l~~~~~~~ 341 (570)
T 3c5e_A 264 CSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ--DLSSYKFPHLQNCVTVGESLLPETLEN 341 (570)
T ss_dssp HTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTS--CTTTCCCTTCCEEEEESSCCCHHHHHH
T ss_pred HHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhc--cccccccccceEEEEcCCcCCHHHHHH
Confidence 67888999999999987 68999999999999999999999999999864 233456789999999999999999999
Q ss_pred HHHhCCCCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEe-----cccchh
Q 037622 343 FVGAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLR-----GPGTMK 417 (560)
Q Consensus 343 ~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~-----~~~~~~ 417 (560)
+.+.+ ++++++.||+||++.+++.... .....+++|+|+|+++++|+| +++++++.|+.|||+|+ |++++.
T Consensus 342 ~~~~~-g~~i~~~YG~TE~~~~~~~~~~--~~~~~~~vG~p~~~~~v~i~d-~~g~~~~~G~~GEl~v~~~~~~g~~v~~ 417 (570)
T 3c5e_A 342 WRAQT-GLDIRESYGQTETGLTCMVSKT--MKIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFS 417 (570)
T ss_dssp HHHHH-SCCCEEEEEETTTEEEEECCTT--SCCCTTCCCEECTTCCEEEEC-TTSCBCCTTCCEEEEEECSSBCCTTCCC
T ss_pred HHHHh-CCchhhccchhhcccceecCcc--cccCCCcccccCCCceEEEEC-CCCCCCCCCCCCeeEEeccCCCCchhhc
Confidence 99988 8999999999999876654432 234678999999999999999 67999999999999999 999999
Q ss_pred hhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCc
Q 037622 418 EYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGE 497 (560)
Q Consensus 418 gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~ 497 (560)
||+++|+.|...| .++||+|||+|++|+||+++++||+||+||++|++|+|.|||++|.++|+|.+++|++.+++..++
T Consensus 418 GY~~~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~ 496 (570)
T 3c5e_A 418 GYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGE 496 (570)
T ss_dssp EETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEE
T ss_pred cccCChhHhhhhh-cCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCe
Confidence 9999999999998 479999999999999999999999999999999999999999999999999999999999998889
Q ss_pred eEEEEEEecCCC--C---CCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 498 IPVAFVVRRDGS--T---LTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 498 ~~~~~v~~~~~~--~---~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
.++++|++.++. . ...++++++|+++|+.|++|+.|+++++||+|++||++|++|++.+..
T Consensus 497 ~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 562 (570)
T 3c5e_A 497 VVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWK 562 (570)
T ss_dssp EEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHTC
T ss_pred EEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHHHHh
Confidence 999999986543 1 125789999999999999999999999999999999999999998753
No 20
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=2e-78 Score=637.37 Aligned_cols=491 Identities=20% Similarity=0.291 Sum_probs=407.4
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.|+.++|.+.++ ++++|+++. ++++||+||.++++++|++|.+ +|+++||+|+|+++|++++++++|||+++|++
T Consensus 4 ~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~-~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v 80 (521)
T 3l8c_A 4 KDMIDSIEQFAQTQADFPVYDCL--GERRTYGQLKRDSDSIAAFIDS-LALLAKSPVLVFGAQTYDMLATFVALTKSGHA 80 (521)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TCCCTTCCEEEEECSSHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHCCCCcceecC--CCeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCE
Confidence 678888887764 669999987 8999999999999999999999 89999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVI 199 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (560)
++|+++.++.+++.++++.+++ ++++++++....+.. ..++.+. .+........+.......
T Consensus 81 ~vpl~~~~~~~~l~~il~~~~~--~~ii~~~~~~~~~~~---~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 142 (521)
T 3l8c_A 81 YIPVDVHSAPERILAIIEIAKP--SLIIAIEEFPLTIEG---ISLVSLS-------------EIESAKLAEMPYERTHSV 142 (521)
T ss_dssp EEEEETTSCHHHHHHHHHHSCC--SEEEESSCCCSCCTT---SEEEEHH-------------HHHHHHHHTCCCCCSSCC
T ss_pred EEecCccccHHHHHHHHHhCCC--CEEEecCcccccccc---Ccccchh-------------hhhhcccccCCcccCCCC
Confidence 9999999999999999999999 888887653221110 1111110 111111111122223455
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
.++++++|+|||||||.||+|+++|+++.+......... .......++++...|++|..+.. .++.++..|+++++
T Consensus 143 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~G~~~~~ 218 (521)
T 3l8c_A 143 KGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSFDLSVM-YWAPTLALGGTLFA 218 (521)
T ss_dssp CTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTSGGGHH-HHHHHHHTTCEEEE
T ss_pred CCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccHHHHHH-HHHHHHhcCCEEEE
Confidence 789999999999999999999999999998777665421 25678899999999999998874 78889999999999
Q ss_pred eCCc---CHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeeccc
Q 037622 280 MRRF---EASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGY 356 (560)
Q Consensus 280 ~~~~---~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~Y 356 (560)
.+.. ++..+++.+.++++|++.++|+++..+... .......++++|.+++||+++++++.+++.+.|+++++++.|
T Consensus 219 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~Y 297 (521)
T 3l8c_A 219 LPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLS-DDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAY 297 (521)
T ss_dssp CCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTS-TTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEE
T ss_pred cCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhh-hccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCc
Confidence 8864 899999999999999999999999998765 444556788999999999999999999999999999999999
Q ss_pred chhhcccccccCCCCCC---CCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhcc---
Q 037622 357 GMTESTAVGTRGFNTKK---FSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTI--- 430 (560)
Q Consensus 357 G~tE~~~~~~~~~~~~~---~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~--- 430 (560)
|+||++.+++....... ....+++|+|+|+++++|+| +++++++.|+.|||+|+||+++.||+++|+.|.+.|
T Consensus 298 G~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~ 376 (521)
T 3l8c_A 298 GPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTF 376 (521)
T ss_dssp CCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEE
T ss_pred CccHHhhhhceeecccccccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCC
Confidence 99999987664332211 22456899999999999999 679999999999999999999999999999999887
Q ss_pred CCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCC-CCceEEEEEEecCCC
Q 037622 431 DKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKV-LGEIPVAFVVRRDGS 509 (560)
Q Consensus 431 ~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~ 509 (560)
++++||+|||+|++|+||++++.||+||+||++|++|+|.|||++|.++|+|.+++|++.+++. .++.++++|++.++.
T Consensus 377 ~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~ 456 (521)
T 3l8c_A 377 KGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGV 456 (521)
T ss_dssp TTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTS
T ss_pred CCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCcc
Confidence 5678999999999999999999999999999999999999999999999999999999987654 457899999988764
Q ss_pred CCC-------HHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 510 TLT-------EAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 510 ~~~-------~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
... .++++++|+++|+.|++|+.++++++||+|++|||||++|++.+.++
T Consensus 457 ~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~ 513 (521)
T 3l8c_A 457 KERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNR 513 (521)
T ss_dssp GGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC--
T ss_pred ccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcC
Confidence 321 57899999999999999999999999999999999999999988654
No 21
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=1.5e-77 Score=631.67 Aligned_cols=493 Identities=25% Similarity=0.343 Sum_probs=404.3
Q ss_pred CHHHHHhccC-CCCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEe
Q 037622 43 DVDSFIFSHK-HNGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVI 121 (560)
Q Consensus 43 ~~~~~~~~~~-~~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v 121 (560)
++.+++.+++ .++++|+++. ++++||+||.++++++|++|.+ +|+++||+|+|+++|++++++++|||+++|++++
T Consensus 25 ~~~~~l~~~~~~p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 101 (529)
T 2v7b_A 25 FAAYLFRLNETRAGKTAYIDD--TGSTTYGELEERARRFASALRT-LGVHPEERILLVMLDTVALPVAFLGALYAGVVPV 101 (529)
T ss_dssp HHHHHHHHTGGGTTSEEEECS--SCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHhhhccCCceEEEeC--CCCccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEE
Confidence 3777777655 4669999987 6899999999999999999999 7999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcC----C--CCEEEecCCCcccccCCCcccHHHhhcccCCCCC
Q 037622 122 PMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWG----T--TPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVE 195 (560)
Q Consensus 122 ~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~----~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (560)
|+++.++.+++.++++.+++ ++++++......+.... . ..++..+.... .......+.++.........
T Consensus 102 pl~~~~~~~~l~~~l~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 176 (529)
T 2v7b_A 102 VANTLLTPADYVYMLTHSHA--RAVIASGALVQNVTQALESAEHDGCQLIVSQPRES---EPRLAPLFEELIDAAAPAAK 176 (529)
T ss_dssp ECCTTCCHHHHHHHHHHHTC--SEEEEEGGGHHHHHHHHHCC---CCEEEEECC---------CCCBHHHHHHTSCCCSS
T ss_pred ecCcccCHHHHHHHHhccCC--eEEEechhhhhHHHHHHhhccccCceEEEeccccc---ccccccchhhhhccCCCccc
Confidence 99999999999999999999 99999887655443321 1 22333232110 00011245555443222223
Q ss_pred CCCCCCCCEEEEEcCCCCCCCchhhhhhhHHH-HHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCC
Q 037622 196 RPVIRQQDTAAILYSSGTTGASKGAELTHGNF-IAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLG 274 (560)
Q Consensus 196 ~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G 274 (560)
.....++++++|+|||||||.||+|+++|+++ ......... ...+.++|++++.+|++|.+++...++.++..|
T Consensus 177 ~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~-----~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G 251 (529)
T 2v7b_A 177 AAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKP-----ILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVG 251 (529)
T ss_dssp CCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCC-----CCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHT
T ss_pred ccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhh-----ccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcC
Confidence 33457899999999999999999999999998 444332221 456788999999999999999976778899999
Q ss_pred CEEEEe-CCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeee
Q 037622 275 PSVVVM-RRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFI 353 (560)
Q Consensus 275 ~~~v~~-~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~ 353 (560)
+++++. +.+++..+++.++++++|+++++|+++..+++. .........++|.+++||+++++++.+++.+.+ +++++
T Consensus 252 ~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~-g~~i~ 329 (529)
T 2v7b_A 252 ATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVS-PNLPARADVAIRICTSAGEALPREIGERFTAHF-GCEIL 329 (529)
T ss_dssp CEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTC-TTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHH-SCCEE
T ss_pred cEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhC-cccccccCCceEEEEEcCCCCCHHHHHHHHHHh-CCcee
Confidence 999987 568999999999999999999999999999865 222222123799999999999999999999988 89999
Q ss_pred cccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCC
Q 037622 354 QGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKE 433 (560)
Q Consensus 354 ~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~ 433 (560)
+.||+||++.+++..... ....+++|+|+|+++++|+| +++++++.|+.|||+|+|++++.||+++|+.+...| .+
T Consensus 330 ~~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~ 405 (529)
T 2v7b_A 330 DGIGSTEMLHIFLSNRAG--AVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATF-LG 405 (529)
T ss_dssp EEEECTTTSSEEEECCTT--CCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHE-ET
T ss_pred eeEchhhcCceeeccccC--CCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccccCCChHHHHHhh-hc
Confidence 999999997665544322 24668999999999999999 679999999999999999999999999999999998 48
Q ss_pred CceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCC--
Q 037622 434 GWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTL-- 511 (560)
Q Consensus 434 ~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-- 511 (560)
+||+|||+|++++||+++++||.||+||++|++|+|.|||++|.++|+|.+++|++. ++..++.+++++++.++...
T Consensus 406 ~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~~ 484 (529)
T 2v7b_A 406 EWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPSE 484 (529)
T ss_dssp TEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCCH
T ss_pred CCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcch
Confidence 999999999999999999999999999999999999999999999999999999998 66667888999998765421
Q ss_pred -CHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHH
Q 037622 512 -TEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKF 555 (560)
Q Consensus 512 -~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~ 555 (560)
..++++++|+++|+.|++|+.++++++||+|++||++|++|+++
T Consensus 485 ~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 529 (529)
T 2v7b_A 485 ILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLREQ 529 (529)
T ss_dssp HHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC-
T ss_pred hHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhhC
Confidence 34689999999999999999999999999999999999999863
No 22
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=1.5e-77 Score=634.03 Aligned_cols=476 Identities=19% Similarity=0.245 Sum_probs=405.8
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.|+.++|.++++ ++++|+++. ++++||+||.++++++|++|.+ +|+++||+|+|+++|++++++++|||+++|++
T Consensus 39 ~~l~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav 115 (563)
T 1amu_A 39 KTIHQLFEEQVSKRPNNVAIVCE--NEQLTYHELNVKANQLARIFIE-KGIGKDTLVGIMMEKSIDLFIGILAVLKAGGA 115 (563)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHHTTCE
T ss_pred CcHHHHHHHHHHHCCCCeEEEeC--CceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCE
Confidence 689999887764 679999987 7899999999999999999999 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC-CCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT-TPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPV 198 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (560)
++|+++.++.+++.++++.+++ ++++++......+..... ..+..+.... + ...........
T Consensus 116 ~vpl~~~~~~~~l~~il~~~~~--~~li~~~~~~~~~~~~~~~~~~~~~~~~~-----------~----~~~~~~~~~~~ 178 (563)
T 1amu_A 116 YVPIDIEYPKERIQYILDDSQA--RMLLTQKHLVHLIHNIQFNGQVEIFEEDT-----------I----KIREGTNLHVP 178 (563)
T ss_dssp EEECCTTSCHHHHHHHHHHHTC--SEEEECGGGHHHHTTSCCCSEEEECCCST-----------T----TTSCCSCCCCC
T ss_pred EEEeCCCCcHHHHHHHHHhcCC--CEEEEcCchhhhhhhccccCceeeecchh-----------h----ccccCccCCCC
Confidence 9999999999999999999999 999998876554443321 1222222110 0 00011111223
Q ss_pred CCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEE
Q 037622 199 IRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVV 278 (560)
Q Consensus 199 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v 278 (560)
..++++++|+|||||||.||||+++|+++.+.+..... ...+.++|+++++.|++|..++. .++.++..|++++
T Consensus 179 ~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~-----~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v 252 (563)
T 1amu_A 179 SKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFEN-----SLNVTEKDRIGQFASISFDASVW-EMFMALLTGASLY 252 (563)
T ss_dssp CCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHH-----TSCCCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEE
T ss_pred CCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHH-----hcCCCCCCEEEEeCCccHHHHHH-HHHHHHHCCCEEE
Confidence 46789999999999999999999999999888776655 46788999999999999998884 7788999999999
Q ss_pred EeCC---cCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecc
Q 037622 279 VMRR---FEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQG 355 (560)
Q Consensus 279 ~~~~---~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~ 355 (560)
+.+. +++..+++.++++++|++.++|+++..+.. ..++++|.+++||+++++++.+++.+ .+++++.
T Consensus 253 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~-------~~~~~lr~~~~gG~~l~~~~~~~~~~---~~~~~~~ 322 (563)
T 1amu_A 253 IILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP-------ERILSIQTLITAGSATSPSLVNKWKE---KVTYINA 322 (563)
T ss_dssp ECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT-------TTCCSCSEEEEESSCCCHHHHHHHTT---TSEEEEE
T ss_pred EcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh-------cccccccEEEEEEecCCHHHHHHHHh---CCeEEEE
Confidence 9875 689999999999999999999999887743 24678999999999999999999876 3789999
Q ss_pred cchhhcccccccCCCCC-CCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccC---
Q 037622 356 YGMTESTAVGTRGFNTK-KFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTID--- 431 (560)
Q Consensus 356 YG~tE~~~~~~~~~~~~-~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~--- 431 (560)
||+||++.+++...... ......++|+|+|+++++|+| +++++++.|+.|||+|+|++++.||+++|+.|.+.|.
T Consensus 323 YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~ 401 (563)
T 1amu_A 323 YGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNP 401 (563)
T ss_dssp ECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECS
T ss_pred ECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCC
Confidence 99999987766543222 123567899999999999999 6789999999999999999999999999999998873
Q ss_pred ---CCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCC
Q 037622 432 ---KEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDG 508 (560)
Q Consensus 432 ---~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 508 (560)
+++||+|||+|++|+||+++++||+||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.+++++++..
T Consensus 402 ~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~- 480 (563)
T 1amu_A 402 FVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK- 480 (563)
T ss_dssp SSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESS-
T ss_pred CCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCC-
Confidence 2469999999999999999999999999999999999999999999999999999999999888889999998764
Q ss_pred CCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHH
Q 037622 509 STLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFL 556 (560)
Q Consensus 509 ~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~ 556 (560)
..+.++++++++++|+.|++|+.++++++||+|++||++|++|++..
T Consensus 481 -~~~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 481 -HIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp -CCCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCC
T ss_pred -CCCHHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCcc
Confidence 46788999999999999999999999999999999999999998643
No 23
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=7.6e-79 Score=646.28 Aligned_cols=480 Identities=21% Similarity=0.280 Sum_probs=319.3
Q ss_pred CCCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCC
Q 037622 41 LLDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGA 118 (560)
Q Consensus 41 ~~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 118 (560)
..+++++|.++++ ++++|+++. ++++||+||.++++++|++|.+ +|+++||+|+|+++|++++++++|||+++|+
T Consensus 74 ~~~l~~~l~~~a~~~pd~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 150 (570)
T 4gr5_A 74 GACVHELFEAQAARAPDAVALLHE--ADELTYGALNERANRLAHRLVG-LGVAPGTLVGVHLERGFDMVVALLAVLKAGG 150 (570)
T ss_dssp SCCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHCCCCeEEECC--CCcEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHHHCC
Confidence 3689999988774 669999997 7899999999999999999999 7999999999999999999999999999999
Q ss_pred eEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCC
Q 037622 119 IVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPV 198 (560)
Q Consensus 119 ~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (560)
+++|++|.++.+++.++++.+++ ++++++......+.. ...+.+.+.. ............
T Consensus 151 ~~vpl~~~~~~~~l~~~l~~~~~--~~~i~~~~~~~~~~~---~~~~~~~~~~---------------~~~~~~~~~~~~ 210 (570)
T 4gr5_A 151 GYTMLDPQFPVERLALSLEDTGA--PLLVTSRPLSGRLTG---TTTLYVEDEA---------------ASDAPAGNLATG 210 (570)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTC--SEEEECTTTTTSSCS---SEEEECCC----------------------CCCCCCC
T ss_pred EEEEcCCCChHHHHHHHHHhcCC--CEEEecchhhhcccC---Ccceeeeccc---------------cccccccccCCC
Confidence 99999999999999999999999 889888764333211 1111111110 001111122334
Q ss_pred CCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEE
Q 037622 199 IRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVV 278 (560)
Q Consensus 199 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v 278 (560)
..++++++|+|||||||.||+|+++|+++.+..... ....++++|+++.++|++|..+. ..++.++..|++++
T Consensus 211 ~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~------~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v 283 (570)
T 4gr5_A 211 VGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ------DYAGFGPDEVFLQCSPVSWDAFG-LELFGALLFGARCV 283 (570)
T ss_dssp CCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSSC------CSSCCSTTCEEEECSCTTSSTHH-HHHHHHHTTTCEEE
T ss_pred CCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHhh------hhcCCCCCCEEEEecCccHHHHH-HHHHHHHhcCCEEE
Confidence 578999999999999999999999999987654331 14567889999999999887666 47888999999999
Q ss_pred EeC--CcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeeccc
Q 037622 279 VMR--RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGY 356 (560)
Q Consensus 279 ~~~--~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~Y 356 (560)
+.+ .+++..+++.++++++|++.++|+++..|++.. ...+++||.+++||+++++++.+++.+.++++++++.|
T Consensus 284 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~----~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y 359 (570)
T 4gr5_A 284 LQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEV----PEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGY 359 (570)
T ss_dssp ECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC----GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEE
T ss_pred EcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhc----hhhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEee
Confidence 987 478999999999999999999999999998752 23578999999999999999999999999899999999
Q ss_pred chhhcccccccCCCCC--CCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCC--
Q 037622 357 GMTESTAVGTRGFNTK--KFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDK-- 432 (560)
Q Consensus 357 G~tE~~~~~~~~~~~~--~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-- 432 (560)
|+||++++++...... ......++|+|+|+++++|+| +++++++.|+.|||+|+||+++.||+++|+.|.+.|..
T Consensus 360 G~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~ 438 (570)
T 4gr5_A 360 GPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADP 438 (570)
T ss_dssp CCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECT
T ss_pred chhhheeeeeeeeecccccCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCC
Confidence 9999988766443221 123456799999999999999 67999999999999999999999999999999988843
Q ss_pred ------CCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEec
Q 037622 433 ------EGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRR 506 (560)
Q Consensus 433 ------~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 506 (560)
++||+|||+|++|+||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.++++|+..
T Consensus 439 ~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~ 518 (570)
T 4gr5_A 439 FAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAE 518 (570)
T ss_dssp TCCSSCCEEEEEEEEEEECTTSCEEEEEC---------------------------------------------------
T ss_pred CCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEec
Confidence 37999999999999999999999999999999999999999999999999999999999888888999999876
Q ss_pred CC-CCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHH
Q 037622 507 DG-STLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKF 555 (560)
Q Consensus 507 ~~-~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~ 555 (560)
.+ ...+.++++++|+++|+.|++|+.++++++||+|++|||+|++|++.
T Consensus 519 ~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 519 RADAPPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp --------------------------------------------------
T ss_pred CCCCCcCHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 53 35677899999999999999999999999999999999999999875
No 24
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=2.5e-77 Score=637.39 Aligned_cols=473 Identities=21% Similarity=0.223 Sum_probs=395.1
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.|++++|.++++ ++++|++++ ++++||+||.++++++|++|.+ .|+++||+|+|+++|++++++++|||+++|++
T Consensus 27 ~tl~~~~~~~a~~~Pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~ 103 (620)
T 4dg8_A 27 PTVVARFSEMAALHPHREAIRDR--FGSVDYRQLLDSAEQLSDYLLE-HYPQPGVCLGVYGEYSRESITCLLAILLSGHH 103 (620)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HCCSSCCEEEEESSSCHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHhCCCCeEEEcC--CCcCcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCE
Confidence 789999988874 779999998 7899999999999999999999 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPVI 199 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (560)
++|++|.++.+++.++++.+++ +++++++........ .....+.. . .........+..
T Consensus 104 ~vpld~~~p~~~l~~il~~~~~--~~vl~~~~~~~~~~~---~~~~~~~~----------------~-~~~~~~~~~~~~ 161 (620)
T 4dg8_A 104 YLYIDLKQPAAWNAELCRQVDC--RLILDCSTTPTPANG---LPCVPVRH----------------L-PAAPASVARPCF 161 (620)
T ss_dssp EEECCTTSCHHHHHHHHHHHTE--EEEEECCSSCCCCTT---SCEEEGGG----------------C-CCCCCCSSCCCC
T ss_pred EEeeCccChHHHHHHHHHhCCC--cEEEecCcccccccC---Cceeeecc----------------C-CcCCccccCCCC
Confidence 9999999999999999999999 888865443211100 11111110 0 011111222345
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
.++++++|+|||||||.||||+++|+++.+.+.. .. ...+.++++++...|++|..++. .++.++..|+++++
T Consensus 162 ~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~-----~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v~ 234 (620)
T 4dg8_A 162 AADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QS-----FLAFAPQMRFLVNSPLSFDAATL-EIWGALLNGGCCVL 234 (620)
T ss_dssp CTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CG-----GGTTCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEEE
T ss_pred CCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HH-----hhCCCCCCEEEEECccCHHHHHH-HHHHHHhcCCEEEe
Confidence 6899999999999999999999999998765543 11 46788999999999999999985 78999999999999
Q ss_pred eC--CcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccc
Q 037622 280 MR--RFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYG 357 (560)
Q Consensus 280 ~~--~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG 357 (560)
.+ .+++..+++.++++++|++.++|+++..+.+.. ...++++|.+++|||++++++.+++.+.+++++++|.||
T Consensus 235 ~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~----~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 310 (620)
T 4dg8_A 235 NDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD----PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYG 310 (620)
T ss_dssp CCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC----GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEEC
T ss_pred CccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC----hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEc
Confidence 65 579999999999999999999999999998642 235789999999999999999999998888999999999
Q ss_pred hhhcccccccCCCCC--CCCcccccccccCCeEEEEEeCCCCcc-CCCCCcceEEEecccchhhhcCCchhhhhccCCC-
Q 037622 358 MTESTAVGTRGFNTK--KFSKYFSVGLLAPNIQAKVVDWVNGCF-LPPGSTGELWLRGPGTMKEYINNADATMSTIDKE- 433 (560)
Q Consensus 358 ~tE~~~~~~~~~~~~--~~~~~~~~G~~~p~~~~~v~d~~~~~~-~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~- 433 (560)
+||++.+++...... ......++|+|+|+++++|+|+ ++++ ++.|+.|||+|+|++++.||+++|+.|.+.|..+
T Consensus 311 ~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~-~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p 389 (620)
T 4dg8_A 311 PTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDE-HGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELP 389 (620)
T ss_dssp CGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECT-TSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEE
T ss_pred hhhhhhheEEEeccccccCCCCCCceecccCcEEEEECc-cCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCC
Confidence 999998766433222 2335678999999999999995 5555 8999999999999999999999999999988543
Q ss_pred ------CceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecC
Q 037622 434 ------GWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRD 507 (560)
Q Consensus 434 ------~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 507 (560)
+||+|||+|++++||.++++||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.+++++ ...
T Consensus 390 ~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~-~~~ 468 (620)
T 4dg8_A 390 YRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWT-GKA 468 (620)
T ss_dssp ETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEE-ECT
T ss_pred CCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEe-cCh
Confidence 7999999999999999999999999999999999999999999999999999999988875555544444 322
Q ss_pred CCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 508 GSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 508 ~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
++++++++++|+.|++|+.++++++||+|++||+||++|++.+.+
T Consensus 469 ------~~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~ 513 (620)
T 4dg8_A 469 ------DASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEE 513 (620)
T ss_dssp ------TCCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCS
T ss_pred ------HHHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhcccc
Confidence 224456778899999999999999999999999999999988754
No 25
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=2.5e-77 Score=624.83 Aligned_cols=474 Identities=27% Similarity=0.397 Sum_probs=388.2
Q ss_pred CCHHHHHhccCC--CC-ceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCC
Q 037622 42 LDVDSFIFSHKH--NG-RTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGA 118 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~-~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 118 (560)
.|+.+.+.++++ ++ ++|++++ ++++||+||.++++++|.+|. .|++|+|+++|++++++++|||+++|+
T Consensus 22 ~tl~~~l~~~a~~~p~d~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~------~~~~V~i~~~~~~~~~~~~la~~~~Ga 93 (505)
T 3nyq_A 22 SSLFPALSPAPTGAPADRPALRFG--ERSLTYAELAAAAGATAGRIG------GAGRVAVWATPAMETGVAVVAALLAGV 93 (505)
T ss_dssp --CCTTTSSCCCSGGGGSEEEEET--TEEEEHHHHHHHHHHHHTTCC---------CEEEECCSSHHHHHHHHHHHHHTC
T ss_pred chhHHHHHHHHHhCCCCCeEEEEC--CeeeeHHHHHHHHHHHHhhcc------CCCEEEEEcCCCHHHHHHHHHHHHhCC
Confidence 567777777665 33 8999998 899999999999999998774 378999999999999999999999999
Q ss_pred eEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhcccCCCCCCCC
Q 037622 119 IVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPV 198 (560)
Q Consensus 119 ~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (560)
+++|++|.++.+++.++++.+++ ++++++...... ........+.+... .........
T Consensus 94 ~~vpl~~~~~~~~l~~il~~~~~--~~vi~~~~~~~~-~~~~~~~~~~~~~~-------------------~~~~~~~~~ 151 (505)
T 3nyq_A 94 AAVPLNPKSGDKELAHILSDSAP--SLVLAPPDAELP-PALGALERVDVDVR-------------------ARGAVPEDG 151 (505)
T ss_dssp CEEEECTTCCHHHHHHHHHHHCC--SEEEECTTCCCC-GGGTTSEEEECCTT-------------------CCCCCCCCC
T ss_pred EEEEcCCCCCHHHHHHHHHHCCC--CEEEECCccccc-hhhccccccccccc-------------------cccCCCCCC
Confidence 99999999999999999999999 888887542100 00000111111110 001112234
Q ss_pred CCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEE
Q 037622 199 IRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVV 278 (560)
Q Consensus 199 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v 278 (560)
..++++++|+|||||||.||+|+++|+++.+.+..... ...+.++|++++.+|++|..|+...++.++..|++++
T Consensus 152 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~-----~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~ 226 (505)
T 3nyq_A 152 ADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALAD-----AWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVR 226 (505)
T ss_dssp CCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHH-----HHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEE
T ss_pred CCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHH-----HhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEE
Confidence 56789999999999999999999999999998887766 4678899999999999999998777899999999999
Q ss_pred EeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhcc--CCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeeccc
Q 037622 279 VMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGL--CGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGY 356 (560)
Q Consensus 279 ~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~--~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~Y 356 (560)
+.+.+++..+++.+ ++++|+++++|+++..+++..... ....++++|.+++||+++++++.+++.+.+ ++++++.|
T Consensus 227 ~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~~~~Y 304 (505)
T 3nyq_A 227 HLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT-GRRVIERY 304 (505)
T ss_dssp ECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCCCEEEE
T ss_pred ECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc-CCeeeccc
Confidence 99999999999999 889999999999999998742111 123467889999999999999999999988 89999999
Q ss_pred chhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCC---CCcceEEEecccchhhhcCCchhhhhccCCC
Q 037622 357 GMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPP---GSTGELWLRGPGTMKEYINNADATMSTIDKE 433 (560)
Q Consensus 357 G~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~---g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~ 433 (560)
|+||++..++.... .....+++|+|+|+++++|+| +++++++. |+.|||+|+|++++.||+++|+.|...|..+
T Consensus 305 G~TE~~~~~~~~~~--~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~ 381 (505)
T 3nyq_A 305 GMTETLMNTSVRAD--GEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTED 381 (505)
T ss_dssp EETTTEEEEECCTT--SCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTT
T ss_pred chhhcccccccCCC--CCCCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCC
Confidence 99999877665432 234678999999999999999 57888876 8999999999999999999999999999889
Q ss_pred CceecCceEEEccCCcEEEEccc-cceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecC-CCCC
Q 037622 434 GWLHTGDIAYFDEDGYLYIVDRL-KEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRD-GSTL 511 (560)
Q Consensus 434 ~~~~TGD~~~~~~~g~l~~~GR~-~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~-~~~~ 511 (560)
+||+|||+|++++||.++++||+ ||+||.+|++|+|.|||++|.++|+|.+++|++.+++..++.++++|++.+ +...
T Consensus 382 g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~ 461 (505)
T 3nyq_A 382 GFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPP 461 (505)
T ss_dssp SCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCC
T ss_pred CCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCC
Confidence 99999999999999999999998 589999999999999999999999999999999999999999999999876 4466
Q ss_pred CHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHH
Q 037622 512 TEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKF 555 (560)
Q Consensus 512 ~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~ 555 (560)
+.++++++|+++|+.|++|+.++++++||+|++||++|++|++.
T Consensus 462 ~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 505 (505)
T 3nyq_A 462 ALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNRD 505 (505)
T ss_dssp CHHHHHHHHHHHTCGGGSCSEEEECSCCCC--------------
T ss_pred CHHHHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhccC
Confidence 78899999999999999999999999999999999999999863
No 26
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.8e-76 Score=619.47 Aligned_cols=486 Identities=24% Similarity=0.349 Sum_probs=384.8
Q ss_pred CHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeE
Q 037622 43 DVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIV 120 (560)
Q Consensus 43 ~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 120 (560)
|+.++|.++++ ++++|+++. ++++||+||.++++++|.+|.+ . +||+|+|+++|++++++++|||+++|+++
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~ 75 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDG--QESYTYQNLYCEASLLAKRLKA-Y---QQSRVGLYIDNSIQSIILIHACWLANIEI 75 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECS--SCEEEHHHHHHHHHHHHHHHHT-T---CCSEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred CHHHHHHHHHHhcCCceEEEeC--CcEEEHHHHHHHHHHHHHHHHH-c---CCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence 45566666654 679999987 7899999999999999999988 4 89999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCC---CCEEEecCCC---cccccCCCc-ccHHHhhcccC-C
Q 037622 121 IPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT---TPVVAVPENL---VNDFKEGRF-SDFHKLIAGKF-D 192 (560)
Q Consensus 121 v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~---~~vi~~~~~~---~~~~~~~~~-~~~~~~~~~~~-~ 192 (560)
+|+++.++.+++.++++.+++ ++++++............ ...+...... ......... ........... .
T Consensus 76 vpl~~~~~~~~l~~~l~~~~~--~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (501)
T 3ipl_A 76 AMINTRLTPNEMTNQMRSIDV--QLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPS 153 (501)
T ss_dssp EECCTTSCHHHHHHHHHHTTC--CEEEESSCCCCTTSEEEETTC--------------------------------CCHH
T ss_pred EecCccCCHHHHHHHHHhcCC--CEEEEccccccccccccccccceeeeeecccccccccccccccccchhhccccCCcc
Confidence 999999999999999999999 999988765433211100 0000000000 000000000 00000000000 0
Q ss_pred CCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhh
Q 037622 193 LVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLS 272 (560)
Q Consensus 193 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~ 272 (560)
........++++++|+|||||||.||+|+++|+++.+.+..... ...+.++|++++++|++|.+|+. .++.++.
T Consensus 154 ~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~-----~~~~~~~d~~l~~~p~~~~~g~~-~~~~~l~ 227 (501)
T 3ipl_A 154 NILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE-----SLGFDRDTNWLSVLPIYHISGLS-VLLRAVI 227 (501)
T ss_dssp HHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHH-----HTCCCTTCEEEECSCTTSHHHHH-HHHHHHH
T ss_pred cccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHH-----hhCCCccCEEEEeCcHHHHHHHH-HHHHHHH
Confidence 11223457899999999999999999999999999988887766 46788999999999999999996 5888999
Q ss_pred CCCEEEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCee
Q 037622 273 LGPSVVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDF 352 (560)
Q Consensus 273 ~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i 352 (560)
.|+++++.+.+++..+++.++++++|++.++|+++..|++. ... ...++|.+++||+++++++.+.+.+. ++++
T Consensus 228 ~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~---~~~~lr~i~~gG~~l~~~~~~~~~~~--~~~~ 301 (501)
T 3ipl_A 228 EGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQ-GLH---EPYNLQKILLGGAKLSATMIETALQY--NLPI 301 (501)
T ss_dssp HTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHH-TCC---SCTTCCEEEECSSCCCHHHHHHHHHT--TCCE
T ss_pred cCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhc-CCC---CcCcccEEEEeCCCCCHHHHHHHHHh--CCCE
Confidence 99999999999999999999999999999999999999876 221 12389999999999999999999884 8999
Q ss_pred ecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCC
Q 037622 353 IQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDK 432 (560)
Q Consensus 353 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~ 432 (560)
++.||+||++..++...........+++|+|+|+++++++|++ .|+.|||+|+|++++.||+++++.+.. + .
T Consensus 302 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~ 373 (501)
T 3ipl_A 302 YNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGT-F-E 373 (501)
T ss_dssp EEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSCCSBSTTCCCS-E-E
T ss_pred eccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhhhCcChhhcch-h-c
Confidence 9999999998765544332223456789999999999999954 467899999999999999999999887 5 6
Q ss_pred CCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCC
Q 037622 433 EGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLT 512 (560)
Q Consensus 433 ~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 512 (560)
+|||+|||+|++++||+++++||.||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.++++++... ..+
T Consensus 374 ~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~--~~~ 451 (501)
T 3ipl_A 374 NGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSES--DIS 451 (501)
T ss_dssp TTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS--CCC
T ss_pred CCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCC--CCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999988743 467
Q ss_pred HHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhc
Q 037622 513 EAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTS 558 (560)
Q Consensus 513 ~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~ 558 (560)
.++++++|+++|+.|++|+.++++++||+|++||++|++|++...+
T Consensus 452 ~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~ 497 (501)
T 3ipl_A 452 KAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHH 497 (501)
T ss_dssp HHHHHHHHHHHSCGGGSCSEEEECSSCC------------------
T ss_pred HHHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhcccc
Confidence 8999999999999999999999999999999999999999998765
No 27
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=1.8e-74 Score=617.21 Aligned_cols=492 Identities=22% Similarity=0.287 Sum_probs=409.1
Q ss_pred CCHHHHHhccCC--CCceEEEEC--CCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhC
Q 037622 42 LDVDSFIFSHKH--NGRTALVDS--LSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLG 117 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~--~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G 117 (560)
.|+.+++.++++ ++++|+++. ..++++||+||.++++++|++|.+ +|+++||+|+|+++|++++++++|||+++|
T Consensus 11 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 89 (590)
T 3kxw_A 11 QSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQA-EGAKPGDRVLLLFAPGLPLIQAFLGCLYAG 89 (590)
T ss_dssp SSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchhHHHHHHHHHHhC
Confidence 789999988774 679998753 235899999999999999999999 799999999999999999999999999999
Q ss_pred CeEeccCCCC---CHHHHHHHHHhcCCceEEEEeeccchHHhhhcC-C-----CCEEEecCCCcccccCCCcccHHHhhc
Q 037622 118 AIVIPMNPLL---SVSEIKKQVTLCKTKISLAFTIYENVDKLRSWG-T-----TPVVAVPENLVNDFKEGRFSDFHKLIA 188 (560)
Q Consensus 118 ~~~v~l~~~~---~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~-~-----~~vi~~~~~~~~~~~~~~~~~~~~~~~ 188 (560)
++++|++|.+ +.+++.++++.+++ ++++++.+....+.... . ..+.... .+.+..
T Consensus 90 ~~~vpl~~~~~~~~~~~~~~~l~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 153 (590)
T 3kxw_A 90 CIAVPIYPPAQEKLLDKAQRIVTNSKP--VIVLMIADHIKKFTADELNTNPKFLKIPAIA--------------LESIEL 153 (590)
T ss_dssp CEEEEECCCCSHHHHHHHHHHHHHHCC--SEEEECHHHHHHHCC-----CCEETTEEEEE--------------GGGCCG
T ss_pred cEEEEecCCCchHHHHHHHHHHHhCCC--CEEEeCHHHHHHHHHhhhhhcccccccceee--------------chhccc
Confidence 9999999988 45789999999999 88998887665554321 0 0111111 111111
Q ss_pred ccCCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHH
Q 037622 189 GKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFAL 268 (560)
Q Consensus 189 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~ 268 (560)
............++++++|+|||||||.||+|+++|+++.+.+..... ...+.++|++++++|++|.+|+...++
T Consensus 154 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~-----~~~~~~~d~~l~~~p~~h~~g~~~~~~ 228 (590)
T 3kxw_A 154 NRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT-----SFHMNDETIIFSWLPPHHDMGLIGCIL 228 (590)
T ss_dssp GGGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHH-----HTTCCTTCEEEECSCTTSHHHHHTTTH
T ss_pred cccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHH-----hhCCCCcCeEEEecCCCcchhhHHHHH
Confidence 111122334557899999999999999999999999999998888776 467889999999999999999975688
Q ss_pred HHhhCCCEEEEeCCc----CHHHHHHHHHHhCcceeccCcHHHHHHHHhh--hccCCCCCCccceeecccCCCCHHHHHH
Q 037622 269 GLLSLGPSVVVMRRF----EASEMLKVIDKYGVTHFPVVPPILMALTKAA--KGLCGNSLKSLKQVSSGAAPANSKIIED 342 (560)
Q Consensus 269 ~~l~~G~~~v~~~~~----~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~--~~~~~~~l~~lr~~~~~g~~~~~~~~~~ 342 (560)
.++..|+++++.+++ ++..+++.++++++|++.++|.++..+.+.. ......+++++|.+++||+++++++.++
T Consensus 229 ~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~ 308 (590)
T 3kxw_A 229 TPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEH 308 (590)
T ss_dssp HHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHH
T ss_pred HHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHH
Confidence 999999999998865 7899999999999999999999999987642 2234567899999999999999999999
Q ss_pred HHHhCC-----CCeeecccchhhcccccccCCCC-------------------------CCCCcccccccccCCeEEEEE
Q 037622 343 FVGAFP-----HVDFIQGYGMTESTAVGTRGFNT-------------------------KKFSKYFSVGLLAPNIQAKVV 392 (560)
Q Consensus 343 ~~~~~~-----~~~i~~~YG~tE~~~~~~~~~~~-------------------------~~~~~~~~~G~~~p~~~~~v~ 392 (560)
+.+.|+ +.++++.||+||++.+++..... .......++|+|+++ ++|+
T Consensus 309 ~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~ 386 (590)
T 3kxw_A 309 FYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKII 386 (590)
T ss_dssp HHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEE
T ss_pred HHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEE
Confidence 999873 45799999999999877653221 112345789999998 8889
Q ss_pred eCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCC------CC--ceecCceEEEccCCcEEEEccccceeeecc
Q 037622 393 DWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDK------EG--WLHTGDIAYFDEDGYLYIVDRLKEVIKYNG 464 (560)
Q Consensus 393 d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~------~~--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G 464 (560)
|++++.+++.|+.|||+|+||+++.||+++|+.|.+.|.. +| ||+|||+|+++ +|.++++||+||+||++|
T Consensus 387 d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G 465 (590)
T 3kxw_A 387 DPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYG 465 (590)
T ss_dssp CTTTCCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHH
T ss_pred cCCCCcCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECC
Confidence 9877999999999999999999999999999999998853 24 99999999998 999999999999999999
Q ss_pred eecChHHHHHHH-hcCCCcc--cEEEEcccCCCCCceEEEEEEecCCC--CCCHHHHHHHHHhccCC-CCCcc-eEEEe-
Q 037622 465 YQISPADLETVL-ICHPEIL--DVAVTGAMDKVLGEIPVAFVVRRDGS--TLTEAAVIDYLAQRVAP-YKKVR-RVVFT- 536 (560)
Q Consensus 465 ~~v~~~~IE~~l-~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~~~l~~-~~~p~-~i~~~- 536 (560)
++|+|.|||++| ..+|.|. +++|++.+++. ++.++++++..++. ..+.++++++|+++|+. +++|. .++++
T Consensus 466 ~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~ 544 (590)
T 3kxw_A 466 KNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIP 544 (590)
T ss_dssp HTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCCCEEEEEE
T ss_pred EecCHHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCceeEEEEEC
Confidence 999999999999 7889998 79999988876 67788888877653 34567899999999885 77775 45555
Q ss_pred -cCCCCCCCCcchHHHHHHHHhcc
Q 037622 537 -KSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 537 -~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
++||+|++|||+|++|++.+.++
T Consensus 545 ~~~lP~t~sGKi~R~~L~~~~~~~ 568 (590)
T 3kxw_A 545 LKAMPHTTSGKIRRNFCRKHLLDK 568 (590)
T ss_dssp TTCSCCCSCHHHHHHHHHHHHHHT
T ss_pred CCccCcCCCcHHHHHHHHHHHHcC
Confidence 79999999999999999998753
No 28
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=9e-74 Score=659.21 Aligned_cols=480 Identities=23% Similarity=0.286 Sum_probs=412.1
Q ss_pred CCHHHHHhccCC--CCceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCe
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAI 119 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 119 (560)
.+++++|.++++ ++++|++++ ++++||+||+++++++|++|.+ .|+++|++|+|+++|++++++++|||+++|++
T Consensus 464 ~~l~~~~~~~~~~~p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~ 540 (1304)
T 2vsq_A 464 KPLTYWFKEAVNANPDAPALTYS--GQTLSYRELDEEANRIARRLQK-HGAGKGSVVALYTKRSLELVIGILGVLKAGAA 540 (1304)
T ss_dssp CCHHHHHHHHHHHCTTSEEEESS--SCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEECCCSSHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHhCCCCeEEEEC--CeeEcHHHHHHHHHHHHHHHHh-cCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCE
Confidence 689999988774 779999987 7999999999999999999999 79999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCC-CEEEecCCCcccccCCCcccHHHhhcccCCCCCCCC
Q 037622 120 VIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTT-PVVAVPENLVNDFKEGRFSDFHKLIAGKFDLVERPV 198 (560)
Q Consensus 120 ~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (560)
++|++|.++.+++.++++.+++ ++++++......+...... ..+.+++.. .. . .........
T Consensus 541 ~vpldp~~p~~rl~~il~~~~~--~~vl~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-~-~~~~~~~~~ 603 (1304)
T 2vsq_A 541 YLPVDPKLPEDRISYMLADSAA--ACLLTHQEMKEQAAELPYTGTTLFIDDQT-------------RF-E-EQASDPATA 603 (1304)
T ss_dssp EEECCTTSCHHHHHHHHHHHTC--CEEEECSTTCTTSTTCCCCSEEEESSCGG-------------GG-G-SCSSCCCCC
T ss_pred EEEECCCCHHHHHHHHHHHcCC--CEEEECcchhhhhhccCCCCcEEEecccc-------------cc-c-cccCCCCCC
Confidence 9999999999999999999999 9999887654443222111 122222110 00 0 011112234
Q ss_pred CCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEE
Q 037622 199 IRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVV 278 (560)
Q Consensus 199 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v 278 (560)
..+++++||+|||||||.||||+++|+++.+.. .... ...++++++++.+.|++|..+. ..++.++..|++++
T Consensus 604 ~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~~-~~~~-----~~~~~~~d~~l~~~~~~fd~~~-~~~~~~l~~G~~l~ 676 (1304)
T 2vsq_A 604 IDPNDPAYIMYTSGTTGKPKGNITTHANIQGLV-KHVD-----YMAFSDQDTFLSVSNYAFDAFT-FDFYASMLNAARLI 676 (1304)
T ss_dssp CCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHH-SSCC-----SSCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEE
T ss_pred CCCCCeEEEEeCCCCCCCCCEEEEehHHHHHHH-HHHH-----hcCCCCCCEEEEECCccHHHHH-HHHHHHHHcCCEEE
Confidence 578999999999999999999999999988642 2111 4667889999999999988887 48899999999999
Q ss_pred EeCC---cCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecc
Q 037622 279 VMRR---FEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQG 355 (560)
Q Consensus 279 ~~~~---~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~ 355 (560)
+.+. .++..+++.++++++|+++++|++++.+.+.. ...++++|.+++|||++++++.+++.+.+++.+++|.
T Consensus 677 ~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~----~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~ 752 (1304)
T 2vsq_A 677 IADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG----EDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINC 752 (1304)
T ss_dssp ECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC----SHHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEE
T ss_pred ECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc----hhcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEe
Confidence 9874 68999999999999999999999999997641 2235789999999999999999999998877899999
Q ss_pred cchhhcccccccCCCCC--CCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccC--
Q 037622 356 YGMTESTAVGTRGFNTK--KFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTID-- 431 (560)
Q Consensus 356 YG~tE~~~~~~~~~~~~--~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-- 431 (560)
||+||++.+++...... ......++|+|++|++++|+| +++++++.|+.|||+|+|+++++||+++|+.|.+.|.
T Consensus 753 YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~ 831 (1304)
T 2vsq_A 753 YGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIEN 831 (1304)
T ss_dssp ECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEEC
T ss_pred EChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCccccCCcccchhhhccC
Confidence 99999998776543322 223456899999999999999 6789999999999999999999999999999998883
Q ss_pred ----CCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecC
Q 037622 432 ----KEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRD 507 (560)
Q Consensus 432 ----~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 507 (560)
+++||+|||+|++++||.++|+||+||+||++|++|++.|||++|.++|+|.+++|++.++...+..++++++...
T Consensus 832 p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~ 911 (1304)
T 2vsq_A 832 PFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRT 911 (1304)
T ss_dssp TTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSS
T ss_pred CCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCC
Confidence 3469999999999999999999999999999999999999999999999999999999988888888999998765
Q ss_pred CCCCCHHHHHHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHH
Q 037622 508 GSTLTEAAVIDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKF 555 (560)
Q Consensus 508 ~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~ 555 (560)
..+.++++++++++||.|++|..++++++||+|++|||||++|++.
T Consensus 912 --~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~ 957 (1304)
T 2vsq_A 912 --QLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKP 957 (1304)
T ss_dssp --SSCHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCC
T ss_pred --CCCHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcCCc
Confidence 4678899999999999999999999999999999999999988653
No 29
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=8.4e-75 Score=615.25 Aligned_cols=494 Identities=18% Similarity=0.197 Sum_probs=314.0
Q ss_pred CCHHHHHhccCC--CCceEEEECCC--------CceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHH
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSLS--------GYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFL 111 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~~--------~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~l 111 (560)
.|+.++|.++++ ++++|+++... ++++||+||.++++++|++|.+ .|+ +||+|+|+++|++++++++|
T Consensus 20 ~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~g~-~gd~V~i~~~n~~~~~~~~l 97 (562)
T 3ite_A 20 VPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIH-ASL-HGRAIAVSLDRSLIAFAIIV 97 (562)
T ss_dssp CCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHH-TTC-SSCEEEEECCSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHh-cCC-CCCEEEEEeCCCHHHHHHHH
Confidence 788888887774 67999986421 2789999999999999999998 799 79999999999999999999
Q ss_pred HHHHhCCeEeccCCCCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCCCEEEecCCCcccccCCCcccHHHhhcccC
Q 037622 112 ALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTTPVVAVPENLVNDFKEGRFSDFHKLIAGKF 191 (560)
Q Consensus 112 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (560)
||+++|++++|+++.++.+++.++++.+++ +++++++.............++... ...+.+......
T Consensus 98 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 164 (562)
T 3ite_A 98 GIMKSGNTYVPIEAGLPNDRKSFLLRDSRA--AMAFVCDNNFDGVELPPETKVLDTK-----------NQSFIENLSTQD 164 (562)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTC--SEEEECTTTTTTCCCCTTCEEEETT-----------CHHHHHHHHHSC
T ss_pred HHHHhCCEEEecCCcCHHHHHHHHHHhcCC--CEEEEccccccccccCccceeeccc-----------chhhhhhccccc
Confidence 999999999999999999999999999999 8888876644332111111111111 112222222222
Q ss_pred CCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhh---cccccCCCCcEEEEecChhhHHhHHHHHH
Q 037622 192 DLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEA---SQYEYLSSEAVFLAVLPMFHIYGLSLFAL 268 (560)
Q Consensus 192 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~g~~~~~~ 268 (560)
.........++++++|+|||||||.||+|+++|+++.+....+..... .....+...+++++..|+.|..++. .++
T Consensus 165 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 243 (562)
T 3ite_A 165 TSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIG-EMF 243 (562)
T ss_dssp CSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHH-HHH
T ss_pred ccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHH-HHH
Confidence 222233446788999999999999999999999999887766554211 1124467889999999999988874 778
Q ss_pred HHhhCCCEEEEeCCcC-HHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhC
Q 037622 269 GLLSLGPSVVVMRRFE-ASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAF 347 (560)
Q Consensus 269 ~~l~~G~~~v~~~~~~-~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~ 347 (560)
.++..|+++++.+.+. +..+++.++++++|++.++|++++.+... ..+++++|.+++||+++++++.+++.+.+
T Consensus 244 ~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~-----~~~~~~lr~~~~gG~~l~~~~~~~~~~~~ 318 (562)
T 3ite_A 244 LAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV-----PEDAPHLVYLGVGGEKMTPRTQQIWSSSD 318 (562)
T ss_dssp HHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC-----GGGSTTCCEEEEESSCCCHHHHHHHTTCS
T ss_pred HHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC-----ccccCceEEEEEecCCCCHHHHHHHhhCC
Confidence 8999999999887643 57788999999999999999998887433 23578999999999999999999999877
Q ss_pred CCCeeecccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhh
Q 037622 348 PHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATM 427 (560)
Q Consensus 348 ~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~ 427 (560)
++++++.||+||++..++...... ....+++|+|+++++++++|++++++++.|+.|||+|+|++++.||+++|+.+.
T Consensus 319 -~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~ 396 (562)
T 3ite_A 319 -RVALVNVYGPTEVTIGCSAGRILP-DSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKG 396 (562)
T ss_dssp -SCEEEEEECCGGGCSCSEEEECCT-TSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCS
T ss_pred -CcEEEEeeccchheeeeeeeeecC-CCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCccccc
Confidence 899999999999987766543322 345678999999999999998889999999999999999999999999999887
Q ss_pred hcc-CCCCceecCceEEEccCCcEEEEccccceeeecceecChHHHHHHHhcC-CCcccEEEEcccCCCCCceEEEEEEe
Q 037622 428 STI-DKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVLICH-PEILDVAVTGAMDKVLGEIPVAFVVR 505 (560)
Q Consensus 428 ~~~-~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~-~~v~~~~v~~~~~~~~~~~~~~~v~~ 505 (560)
..+ ++++||+|||+|++|+||+++++||+||+||++|++|+|.|||++|.++ |.+.+++|++.+++..++..++.++.
T Consensus 397 ~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~ 476 (562)
T 3ite_A 397 FCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVA 476 (562)
T ss_dssp EEEETTEEEEEEEEEEEECTTSCEEEEEEC--------------------------------------------------
T ss_pred cccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEe
Confidence 664 2234999999999999999999999999999999999999999999998 88888999988888777766666554
Q ss_pred cCCCCC-------------CHHHHHHHHHhccCCCCCcceEEEecCCCCC-CCCcchHHHHHHHHhc
Q 037622 506 RDGSTL-------------TEAAVIDYLAQRVAPYKKVRRVVFTKSIPKS-AAGKVLRRELRKFLTS 558 (560)
Q Consensus 506 ~~~~~~-------------~~~~l~~~~~~~l~~~~~p~~i~~~~~lP~t-~~GKi~r~~L~~~~~~ 558 (560)
..+... ..++|+++|+++|+.|++|+.|+++++||+| ++||++|++|++.+.+
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~ 543 (562)
T 3ite_A 477 SSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFHT 543 (562)
T ss_dssp -------------------------------------------------------------------
T ss_pred cccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHHhc
Confidence 433222 2348999999999999999999999999998 8999999999998764
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=5e-72 Score=596.92 Aligned_cols=495 Identities=21% Similarity=0.280 Sum_probs=407.8
Q ss_pred CCCCCHHHHHhccCCCC--ceEEEECC-CCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 037622 39 DSLLDVDSFIFSHKHNG--RTALVDSL-SGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLY 115 (560)
Q Consensus 39 ~~~~~~~~~~~~~~~~~--~~a~~~~~-~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~ 115 (560)
++..|+.+++.++++.+ .+++.+.. .++++||+||.++++++|++|.+ +|+++||+|+|+++|++++++++|||++
T Consensus 18 ~~~~tl~~~l~~~a~~~p~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 96 (576)
T 3gqw_A 18 ADFPTLVDALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLS-LNLKKGDRVALIAETSSEFVEAFFACQY 96 (576)
T ss_dssp SCCSSHHHHHHHHTTSSCEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHH-TCCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHhhCCCCeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence 34579999999888755 44443321 24799999999999999999999 7999999999999999999999999999
Q ss_pred hCCeEeccCCCCC-------HHHHHHHHHhcCCceEEEEeeccchHHhhhcCC--CCEEEecCCCcccccCCCcccHHHh
Q 037622 116 LGAIVIPMNPLLS-------VSEIKKQVTLCKTKISLAFTIYENVDKLRSWGT--TPVVAVPENLVNDFKEGRFSDFHKL 186 (560)
Q Consensus 116 ~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~ 186 (560)
+|++++|+++.++ .+++.++++.+++ ++++++.+....+..... ..+..... ...
T Consensus 97 ~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~--~~ii~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~ 160 (576)
T 3gqw_A 97 AGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQP--AAIITGDEWLPLVNAATHDNPELHVLSH--------------AWF 160 (576)
T ss_dssp TTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCC--SEEEECGGGHHHHHHHGGGCTTCEEEEH--------------HHH
T ss_pred hCCeEeecCCCCcccchhhHHHHHHHHHHhcCC--CEEEecHHHHHHHHHhhccCCcceecch--------------hhh
Confidence 9999999999998 8999999999999 999998876655543221 11111110 000
Q ss_pred hcccCCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHH
Q 037622 187 IAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLF 266 (560)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~ 266 (560)
..............++++++|+|||||||.||+|+++|+++.+.+...... ...+.++|++++++|++|.+|+...
T Consensus 161 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~----~~~~~~~d~~l~~~p~~h~~g~~~~ 236 (576)
T 3gqw_A 161 KALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHD----GIKLRPGDRCVSWLPFYHDMGLVGF 236 (576)
T ss_dssp HTSCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHT----TSCCCTTCCEEECCCTTSHHHHHHH
T ss_pred hcccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhc----ccCCCCcceEEEcCCccccccHHHH
Confidence 011111122234467999999999999999999999999999887766541 2578899999999999999999777
Q ss_pred HHHHhhCCCEEEEeCC----cCHHHHHHHHHHhCcceeccCcHHHHHHHHhh--hccCCCCCCccceeecccCCCCHHHH
Q 037622 267 ALGLLSLGPSVVVMRR----FEASEMLKVIDKYGVTHFPVVPPILMALTKAA--KGLCGNSLKSLKQVSSGAAPANSKII 340 (560)
Q Consensus 267 ~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~--~~~~~~~l~~lr~~~~~g~~~~~~~~ 340 (560)
++.++..|+++++.+. +++..+++.++++++|+++++|+++..+.+.. ......+++++|.+++||+++++++.
T Consensus 237 ~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~ 316 (576)
T 3gqw_A 237 LLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQL 316 (576)
T ss_dssp THHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHH
T ss_pred HHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHH
Confidence 8888999999998874 57889999999999999999999998876531 22345678999999999999999999
Q ss_pred HHHHHhCC-----CCeeecccchhhcccccccCCCCCC--------------------------CCcccccccccCCeEE
Q 037622 341 EDFVGAFP-----HVDFIQGYGMTESTAVGTRGFNTKK--------------------------FSKYFSVGLLAPNIQA 389 (560)
Q Consensus 341 ~~~~~~~~-----~~~i~~~YG~tE~~~~~~~~~~~~~--------------------------~~~~~~~G~~~p~~~~ 389 (560)
+++.+.|+ ++++++.||+||++.+++....... .....++|+|+|++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~ 396 (576)
T 3gqw_A 317 HQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGI 396 (576)
T ss_dssp HHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEE
T ss_pred HHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeE
Confidence 99999875 7889999999999987765432211 0112389999999999
Q ss_pred EEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEccCCcEEEEccccceeeecceecCh
Q 037622 390 KVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDEDGYLYIVDRLKEVIKYNGYQISP 469 (560)
Q Consensus 390 ~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~ 469 (560)
+|+| +++++++.|+.|||+|+|++++.||+++|+.+...+ .+|||+|||+|++ +||.++++||.||+||++|++|+|
T Consensus 397 ~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p 473 (576)
T 3gqw_A 397 EIRN-EAGMPVAERVVGHICISGPSLMSGYFGDQVSQDEIA-ATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWP 473 (576)
T ss_dssp EEEC-TTSCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHH-HHSCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECH
T ss_pred EEEC-CCCCCCCCCCeEEEEEeCccccccccCCcccccccc-CCCeeeccceEEE-ECCEEEEEecCcceEEECCEEECH
Confidence 9999 789999999999999999999999999999887765 6899999999999 799999999999999999999999
Q ss_pred HHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCHHHHHHHHHhcc-CCCCCcceEEEec--CCCCCCCCc
Q 037622 470 ADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRV-APYKKVRRVVFTK--SIPKSAAGK 546 (560)
Q Consensus 470 ~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l-~~~~~p~~i~~~~--~lP~t~~GK 546 (560)
.|||++|.+||+|.+++|++..++. +.++++++.........+++++++++++ +.+++|..+.+++ +||+|++||
T Consensus 474 ~eIE~~l~~~p~V~~~~vv~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~~GK 551 (576)
T 3gqw_A 474 QDIEYIAEQEPEIHSGDAIAFVTAQ--EKIILQIQCRISDEERRGQLIHALAARIQSEFGVTAAIDLLPPHSIPRTSSGK 551 (576)
T ss_dssp HHHHHHHTTSSSCCTTSEEEEECTT--SCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHSCCEEEEEECSSCSCBCTTSS
T ss_pred HHHHHHHHhCcccccccEEEEEcCC--ccEEEEEEEecCchhHHHHHHHHHHHHHHHHhCCceeEEEECCCCcCcCCCcc
Confidence 9999999999999998888776664 3345555554444445678999999998 6889999988887 999999999
Q ss_pred chHHHHHHHHhcc
Q 037622 547 VLRRELRKFLTSK 559 (560)
Q Consensus 547 i~r~~L~~~~~~~ 559 (560)
++|++|++.+.++
T Consensus 552 i~r~~l~~~~~~~ 564 (576)
T 3gqw_A 552 PARAEAKKRYQKA 564 (576)
T ss_dssp BCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH
Confidence 9999999998764
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=5.7e-60 Score=492.54 Aligned_cols=386 Identities=20% Similarity=0.298 Sum_probs=316.9
Q ss_pred CCHHHHHhccCC--CCceEEEECC-----CC--ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHH
Q 037622 42 LDVDSFIFSHKH--NGRTALVDSL-----SG--YSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLA 112 (560)
Q Consensus 42 ~~~~~~~~~~~~--~~~~a~~~~~-----~~--~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA 112 (560)
.|+.++|.++++ ++++|+++.. ++ +++||+||.++++++|++|.+ .|+ +||+|+|+++|++++++++||
T Consensus 24 ~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-~g~-~gd~V~i~~~n~~e~~~~~lA 101 (480)
T 3t5a_A 24 RSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSR-CGS-TGDRVVISAPQGLEYVVAFLG 101 (480)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTT-SSC-TTCEEEEECCSSHHHHHHHHH
T ss_pred ccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHh-cCC-CCCEEEEEcCCcHHHHHHHHH
Confidence 899999988774 6799998642 22 799999999999999999999 796 999999999999999999999
Q ss_pred HHHhCCeEeccCC---CCCHHHHHHHHHhcCCceEEEEeeccchHHhhhcCCC-------CEEEecCCCcccccCCCccc
Q 037622 113 LLYLGAIVIPMNP---LLSVSEIKKQVTLCKTKISLAFTIYENVDKLRSWGTT-------PVVAVPENLVNDFKEGRFSD 182 (560)
Q Consensus 113 ~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~-------~vi~~~~~~~~~~~~~~~~~ 182 (560)
|+++|++++|+++ .++.+++.++++.+++ ++++++......+...... .++.++.
T Consensus 102 ~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 166 (480)
T 3t5a_A 102 ALQAGRIAVPLSVPQGGVTDERSDSVLSDSSP--VAILTTSSAVDDVVQHVARRPGESPPSIIEVDL------------- 166 (480)
T ss_dssp HHHTTCEEEEECSCCSCTTCCHHHHHHHHHCC--SEEEECTTTHHHHHHTCC------CCEEEEGGG-------------
T ss_pred HHHhCcEEEeeCCCCccchHHHHHHHHHhCCC--CEEEeChhHHHHHHHHHhccccccccceeEecc-------------
Confidence 9999999999999 7889999999999999 9999998877666543321 1121111
Q ss_pred HHHhhcccCCCCCCCCCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCC------CcEEEEecC
Q 037622 183 FHKLIAGKFDLVERPVIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSS------EAVFLAVLP 256 (560)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~p 256 (560)
...............++++++|+|||||||.||+|+++|+++.+.+..... ...+.. ++++++++|
T Consensus 167 ---~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~-----~~~~~~~~~~~~~d~~l~~~p 238 (480)
T 3t5a_A 167 ---LDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMS-----GYFADTDGIPPPNSALVSWLP 238 (480)
T ss_dssp ---SCTTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHH-----HHCTTTTTCCCTTEEEEECCC
T ss_pred ---cccccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHH-----HhccccccCCCCCCeEEEeCC
Confidence 001111122334456789999999999999999999999999988877765 344555 899999999
Q ss_pred hhhHHhHHHHHHHHhhCCCEEEEeCCc----CHHHHHHHHHHhCcceeccCcHHHHHHHHhh---hccCCCCCCccceee
Q 037622 257 MFHIYGLSLFALGLLSLGPSVVVMRRF----EASEMLKVIDKYGVTHFPVVPPILMALTKAA---KGLCGNSLKSLKQVS 329 (560)
Q Consensus 257 ~~~~~g~~~~~~~~l~~G~~~v~~~~~----~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~---~~~~~~~l~~lr~~~ 329 (560)
++|.+|+...++.++..|+++++.++. ++..+++.++++++| +.++|+++..++... ......++++||.++
T Consensus 239 l~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~ 317 (480)
T 3t5a_A 239 FYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTIL 317 (480)
T ss_dssp TTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEE
T ss_pred CcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheee
Confidence 999999877889999999999998753 899999999999999 889999998887641 234456789999999
Q ss_pred cccCCCCHHHHHHHHHhC-----CCCeeecccchhhcccccccCCCCCC-----------------------CCcccccc
Q 037622 330 SGAAPANSKIIEDFVGAF-----PHVDFIQGYGMTESTAVGTRGFNTKK-----------------------FSKYFSVG 381 (560)
Q Consensus 330 ~~g~~~~~~~~~~~~~~~-----~~~~i~~~YG~tE~~~~~~~~~~~~~-----------------------~~~~~~~G 381 (560)
+||+++++++.+++.+.| +++.+++.||+||++.+++....... .....++|
T Consensus 318 ~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G 397 (480)
T 3t5a_A 318 SGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYM 397 (480)
T ss_dssp ECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEE
T ss_pred ecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecC
Confidence 999999999999999998 35689999999999987766543211 13456899
Q ss_pred cccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccC-----------CCCceecCceEEEccCCcE
Q 037622 382 LLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTID-----------KEGWLHTGDIAYFDEDGYL 450 (560)
Q Consensus 382 ~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-----------~~~~~~TGD~~~~~~~g~l 450 (560)
+|+| ++++|+|++++++++.|+.|||+|+||+++.||+++|+.|.+.|+ .++||+|||+|+++ ||+|
T Consensus 398 ~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l 475 (480)
T 3t5a_A 398 LPRS-PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKM 475 (480)
T ss_dssp CCSS-SEEEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEE
T ss_pred cccC-CEEEEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEE
Confidence 9999 999999987799999999999999999999999999999999885 56799999999996 9999
Q ss_pred EEEcc
Q 037622 451 YIVDR 455 (560)
Q Consensus 451 ~~~GR 455 (560)
+|+||
T Consensus 476 ~~~GR 480 (480)
T 3t5a_A 476 FIIGR 480 (480)
T ss_dssp EECC-
T ss_pred EEeCC
Confidence 99998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=7.3e-56 Score=440.69 Aligned_cols=316 Identities=20% Similarity=0.231 Sum_probs=270.6
Q ss_pred CCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEe
Q 037622 201 QQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVM 280 (560)
Q Consensus 201 ~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 280 (560)
.+++++|+|||||||.||+|++||+++.+.+..... ...++++|++++++|++|++|+. .++.++..|+++++.
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~-----~~~~~~~d~~l~~~pl~h~~gl~-~~~~~l~~g~~~~~~ 109 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGK-----ALSLGPGTRALVCLNVGYIAGLM-MLVRGMELDWELTVT 109 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHH-----HTTCCTTCEEEECSCTTSHHHHH-HHHHHHHHTCEEEEE
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHH-----HhCCCCCCEEEEECChHHHHHHH-HHHHHHHhCcEEEec
Confidence 478999999999999999999999999998887776 56789999999999999999995 677888999999887
Q ss_pred CCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccCCCCHHHHHHHHHhCCCCeeecccchhh
Q 037622 281 RRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQGYGMTE 360 (560)
Q Consensus 281 ~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE 360 (560)
++. ...++.++++++|++.++|+++..|++.. ....++++||.+++||+++++++.+++.+. ++++++.||+||
T Consensus 110 ~~~--~~~~~~i~~~~~t~~~~~P~~l~~ll~~~--~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TE 183 (358)
T 4gs5_A 110 EPT--ANPLAGLDHADFDFVAMVPMQLQSILENS--ATSGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTE 183 (358)
T ss_dssp CCC--SCTTTTCSSCCCSEEEECHHHHHHHHHCT--TTGGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGG
T ss_pred Ccc--ccHHHHHHHhCCeEEEcChHHHHHhhccc--cccccCCcceEEEEcccCCCchheeccccc--CceEEecccccc
Confidence 652 23466788999999999999999998752 234468899999999999999999999875 899999999999
Q ss_pred cccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCc
Q 037622 361 STAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGD 440 (560)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD 440 (560)
++..++..... ....+.+|.+.||+.+.+.+ .||++++|+.. .+|||+|||
T Consensus 184 t~~~~~~~~~~--~~~~g~~~~~~pgv~~~~~~-----------~Gel~~~g~~~----------------~~g~~~TGD 234 (358)
T 4gs5_A 184 TVSHVALKALN--GPEASELYVFLPGIQYGVDE-----------RGCLHISGAVT----------------NGQTVQTND 234 (358)
T ss_dssp GSSEEEEEECS--STTCCSCEEECTTCEEEECT-----------TSEEEEESGGG----------------TTCCEEEEE
T ss_pred ccceeeccccc--ccccceeeccCCCeEEEecC-----------cCceEEecccc----------------cCcceecCC
Confidence 99877655433 23567899999999887633 49999998632 578999999
Q ss_pred eEEEccCCcEEEEccccceeeecceecChHHHHHHH---hcCCCcccEEEE-cccCCCCCceEEEEEEecCCCCCCHHHH
Q 037622 441 IAYFDEDGYLYIVDRLKEVIKYNGYQISPADLETVL---ICHPEILDVAVT-GAMDKVLGEIPVAFVVRRDGSTLTEAAV 516 (560)
Q Consensus 441 ~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~IE~~l---~~~~~v~~~~v~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l 516 (560)
+|++|++| ++++||+||+||++|++|+|.|||++| .+||.|.+++|+ +.+++..|+.++++|+...+ ....+++
T Consensus 235 lg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~-~~~~~~l 312 (358)
T 4gs5_A 235 LVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP-EALTERL 312 (358)
T ss_dssp EEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC-HHHHHHH
T ss_pred ccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC-CcCHHHH
Confidence 99999888 677899999999999999999999877 468999998776 67788888999888876543 4556789
Q ss_pred HHHHHhccCCCCCcceEEEecCCCCCCCCcchHHHHHHHHhcc
Q 037622 517 IDYLAQRVAPYKKVRRVVFTKSIPKSAAGKVLRRELRKFLTSK 559 (560)
Q Consensus 517 ~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 559 (560)
+++|+++|+.|++|+.|+++++||+|++|||+|++|++++++.
T Consensus 313 ~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~ 355 (358)
T 4gs5_A 313 TAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDS 355 (358)
T ss_dssp HHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC--
T ss_pred HHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999998764
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=4.5e-51 Score=419.33 Aligned_cols=331 Identities=19% Similarity=0.159 Sum_probs=275.1
Q ss_pred CCCC-CCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCE
Q 037622 198 VIRQ-QDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPS 276 (560)
Q Consensus 198 ~~~~-~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~ 276 (560)
...+ +++++++|||||||.||+|+++|.++............ ..++.++|+++...|+.|..+....++.++..|++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~ 158 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLY--MVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL 158 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHH--HTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHH--HcCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence 3455 88999999999999999999999999877666543221 35678999999999987776666678889999999
Q ss_pred EEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCC--CCCccceeecccCCCCHHHHHHHHHhCCCCeeec
Q 037622 277 VVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGN--SLKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQ 354 (560)
Q Consensus 277 ~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~--~l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~ 354 (560)
+++.+..++..+++.++++++|+++++|+++..|++.. ..... .++++|.+++|||++++++.+.+.+.| ++++++
T Consensus 159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~ 236 (436)
T 3qov_A 159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVF-QEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYN 236 (436)
T ss_dssp EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHH-HHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEE
T ss_pred EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHH-HHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEe
Confidence 99998889999999999999999999999999998763 22233 378999999999999999999999999 899999
Q ss_pred ccchhhcccccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCCCC
Q 037622 355 GYGMTESTAVGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEG 434 (560)
Q Consensus 355 ~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~ 434 (560)
.||+||+++.++..... .....|.+.+++.++|+|++++++++.|+.|||+|+|+ +...+ ..+
T Consensus 237 ~YG~TE~~~~~~~~~~~----~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~------------~~~~~-~~~ 299 (436)
T 3qov_A 237 SFGMTEMNGPGVAFECQ----EQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTL------------DREMM-PLI 299 (436)
T ss_dssp EEEEGGGTEEEEEEECT----TCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEES------------SCCSS-CCC
T ss_pred cCcchhhcCCeeEEecC----CCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEecc------------CcCCc-eEE
Confidence 99999995432221111 12236778889999999988999999999999999984 22233 578
Q ss_pred ceecCceEEEccCC------c---EEEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEe
Q 037622 435 WLHTGDIAYFDEDG------Y---LYIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVR 505 (560)
Q Consensus 435 ~~~TGD~~~~~~~g------~---l~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~ 505 (560)
||+|||+|+++++| . +++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|++
T Consensus 300 ~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~ 379 (436)
T 3qov_A 300 RYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVEL 379 (436)
T ss_dssp SEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEE
Confidence 99999999999998 5 69999999999999999999999999999999999999999888888899999998
Q ss_pred cCCCCCC----HHHHHHHHHhccCCC-CCcceEEEec--CCCCCCCCcchHHH
Q 037622 506 RDGSTLT----EAAVIDYLAQRVAPY-KKVRRVVFTK--SIPKSAAGKVLRRE 551 (560)
Q Consensus 506 ~~~~~~~----~~~l~~~~~~~l~~~-~~p~~i~~~~--~lP~t~~GKi~r~~ 551 (560)
. +...+ .++++++++++|+.+ +.|..+++++ +||+|+ ||++|..
T Consensus 380 ~-~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~~ 430 (436)
T 3qov_A 380 S-DLSTDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRVK 430 (436)
T ss_dssp C-TTCCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CEE
T ss_pred c-CccccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEEE
Confidence 8 54444 678999999999988 8999999998 999999 9999853
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=1.1e-50 Score=417.22 Aligned_cols=334 Identities=19% Similarity=0.184 Sum_probs=276.8
Q ss_pred CCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecCh-hhHHhHHHHHHHHhhCCCE
Q 037622 198 VIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPM-FHIYGLSLFALGLLSLGPS 276 (560)
Q Consensus 198 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~~l~~G~~ 276 (560)
...++++++++|||||||.||+|+++|.++............ ..++.++|+++...|+ +|..++ ...+.++..|++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~~~~~~~~~~-~~~~~~~~~G~~ 164 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIR--AAGGRPGDTLHNAFGYGLFTGGL-GIHYGAERLGCM 164 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHH--HTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHHTCE
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHH--HcCCCCCCEEEEeccCcccccHH-HHHHHHHHcCCE
Confidence 346789999999999999999999999998876655443211 3567889999999998 466665 467888999999
Q ss_pred EEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCC--CCccceeecccCCCCHHHHHHHHHhCCCCeeec
Q 037622 277 VVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNS--LKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQ 354 (560)
Q Consensus 277 ~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~--l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~ 354 (560)
+++.+.+++..+++.++++++|++.++|+++..|++.. .....+ ++++|.+++|||++++++.+.+.+.| ++++++
T Consensus 165 ~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~-~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~ 242 (443)
T 2y4o_A 165 VVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEM-VRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALD 242 (443)
T ss_dssp EECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH-HHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEE
T ss_pred EEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHH-HHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEe
Confidence 99988889999999999999999999999999998762 222232 47899999999999999999999998 899999
Q ss_pred ccchhhccc--ccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCC
Q 037622 355 GYGMTESTA--VGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDK 432 (560)
Q Consensus 355 ~YG~tE~~~--~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~ 432 (560)
.||+||+++ ++..+.. .....+.+.+++.++|+|++++++++.|+.|||+|+|. +...+ .
T Consensus 243 ~YG~TE~~g~~~~~~~~~-----~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~------------t~~~~-p 304 (443)
T 2y4o_A 243 IYGLSEVMGPGVACECVE-----TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL------------TKEAM-P 304 (443)
T ss_dssp EEEETTTTEEEEEEECTT-----TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-C
T ss_pred ccCchhhcCCeEEeccCC-----CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCC------------CcccC-h
Confidence 999999743 3322211 11125567789999999988899999999999999973 22234 5
Q ss_pred CCceecCceEEEccC-CcE-----EEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEec
Q 037622 433 EGWLHTGDIAYFDED-GYL-----YIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRR 506 (560)
Q Consensus 433 ~~~~~TGD~~~~~~~-g~l-----~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 506 (560)
.+||+|||+|+++++ |++ ++.||.||+||++|++|+|.+||++|.++|+|.++++++.+++..++.++++|++.
T Consensus 305 ~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~ 384 (443)
T 2y4o_A 305 VIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELR 384 (443)
T ss_dssp CSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred hheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEEC
Confidence 789999999999999 986 89999999999999999999999999999999999999888776678889998876
Q ss_pred C--C---CCCCHHHHHHHHHhccCCC-CCcceEEEe--cCCCCCCCCcchHHHHHH
Q 037622 507 D--G---STLTEAAVIDYLAQRVAPY-KKVRRVVFT--KSIPKSAAGKVLRRELRK 554 (560)
Q Consensus 507 ~--~---~~~~~~~l~~~~~~~l~~~-~~p~~i~~~--~~lP~t~~GKi~r~~L~~ 554 (560)
+ + ...+.++++++|+++|+.+ ..|..+.++ ++||+|++||++|+..++
T Consensus 385 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~~r 440 (443)
T 2y4o_A 385 SEAAASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVIDRR 440 (443)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEECC
T ss_pred CcccccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEecc
Confidence 5 2 2345578999999999887 488888888 599999999999975443
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=1.1e-49 Score=409.06 Aligned_cols=330 Identities=17% Similarity=0.152 Sum_probs=276.2
Q ss_pred CCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecCh-hhHHhHHHHHHHHhhCCCE
Q 037622 198 VIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPM-FHIYGLSLFALGLLSLGPS 276 (560)
Q Consensus 198 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~~l~~G~~ 276 (560)
...++++++++|||||||.||+|+++|.++............ ..++.++|+++..+|+ +|..++. ..+.++..|++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~G~~ 162 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIR--AAGARRGDKVHVSYGYGLFTGGLG-AHYGAERAGLT 162 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHH--HTTCCTTCEEEECSCCSSSHHHHH-HHHHHHHTTCE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHH--HcCCCCCCEEEEcccccccccchH-HHHHHHHcCCE
Confidence 346689999999999999999999999998877655443211 3567889999999998 6777664 67888999999
Q ss_pred EEEeCCcCHHHHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCC--CCccceeecccCCCCHHHHHHHHHhCCCCeeec
Q 037622 277 VVVMRRFEASEMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNS--LKSLKQVSSGAAPANSKIIEDFVGAFPHVDFIQ 354 (560)
Q Consensus 277 ~v~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~--l~~lr~~~~~g~~~~~~~~~~~~~~~~~~~i~~ 354 (560)
+++.+.+++..+++.++++++|+++++|+++..|++... ....+ ++++|.+++||+++++++.+.+.+.| ++++++
T Consensus 163 ~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~-~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~ 240 (437)
T 2y27_A 163 VIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIE-RQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVD 240 (437)
T ss_dssp EECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH-HTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEE
T ss_pred EEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHH-HcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEe
Confidence 998888899999999999999999999999999987632 22232 47899999999999999999999988 899999
Q ss_pred ccchhhc-cc-ccccCCCCCCCCcccccccccCCeEEEEEeCCCCccCCCCCcceEEEecccchhhhcCCchhhhhccCC
Q 037622 355 GYGMTES-TA-VGTRGFNTKKFSKYFSVGLLAPNIQAKVVDWVNGCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDK 432 (560)
Q Consensus 355 ~YG~tE~-~~-~~~~~~~~~~~~~~~~~G~~~p~~~~~v~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~ 432 (560)
.||+||+ +. ++..+. . .....+.+.+++.++|+|++++++++.|+.|||+|+|. +...+ .
T Consensus 241 ~YG~TE~~g~~~~~~~~-~----~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~------------t~~~~-~ 302 (437)
T 2y27_A 241 IYGLSEVMGPGVASECV-E----TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL------------TKEAL-P 302 (437)
T ss_dssp EEEETTTTEEEEEECCT-T----TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-C
T ss_pred cCCchhhcCCeeEEecC-C----CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC------------CcCCc-h
Confidence 9999998 43 333221 1 11125667799999999988899999999999999973 22334 5
Q ss_pred CCceecCceEEEcc-CCcE-----EEEccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEec
Q 037622 433 EGWLHTGDIAYFDE-DGYL-----YIVDRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRR 506 (560)
Q Consensus 433 ~~~~~TGD~~~~~~-~g~l-----~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 506 (560)
.+||+|||+|++++ +|++ ++.||.||+||++|++|+|.+||++|.++|+|.++++++.+++..++.++++|++.
T Consensus 303 ~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~ 382 (437)
T 2y27_A 303 IIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPC 382 (437)
T ss_dssp CCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBC
T ss_pred hheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEEC
Confidence 78999999999998 6985 89999999999999999999999999999999999999888777778899999887
Q ss_pred CCCC---CCHHHHHHHHHhccCCC-CCcceEEEe--cCCCCCCCCcchHHH
Q 037622 507 DGST---LTEAAVIDYLAQRVAPY-KKVRRVVFT--KSIPKSAAGKVLRRE 551 (560)
Q Consensus 507 ~~~~---~~~~~l~~~~~~~l~~~-~~p~~i~~~--~~lP~t~~GKi~r~~ 551 (560)
++.. .+.++++++|+++|+.+ .+|..|.++ ++||+|+ ||++|+.
T Consensus 383 ~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 383 PETAPDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp TTTTTCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred CCccchhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 6643 34578999999999988 588888888 5999999 9999964
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.98 E-value=1.9e-32 Score=274.43 Aligned_cols=242 Identities=19% Similarity=0.158 Sum_probs=183.6
Q ss_pred CCCCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecCh-hhHHhHHHHHHHHhhCCCE
Q 037622 198 VIRQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPM-FHIYGLSLFALGLLSLGPS 276 (560)
Q Consensus 198 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~~l~~G~~ 276 (560)
...++++++|+|||||||.||+|+++|.++............ ..++.++|++++..|+ +|..++. ..+.++..|+
T Consensus 87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~g~~~~g~~-~~~~~~~~G~- 162 (369)
T 3hgu_A 87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQ--HRPGRPSGNTLAAIPTGPHIVGAI-NKERALRLGG- 162 (369)
T ss_dssp TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTT--TSTTCCCCEEEECSCCTTCHHHHH-HHHHHHHTTS-
T ss_pred cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHH--hhCCCCcceEEEecCCCchhhhHH-HHHHHHHcCC-
Confidence 346789999999999999999999999999988776543221 4567889999999999 9999985 5556688898
Q ss_pred EEEeCCcCHH-----------------------HHHHHHHHhCcceeccCcHHHHHHHHhhhccCCCCCCccceeecccC
Q 037622 277 VVVMRRFEAS-----------------------EMLKVIDKYGVTHFPVVPPILMALTKAAKGLCGNSLKSLKQVSSGAA 333 (560)
Q Consensus 277 ~v~~~~~~~~-----------------------~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~lr~~~~~g~ 333 (560)
+++...+++. .+++.++++++|++.++|+++..|++. .......++++|.+++|||
T Consensus 163 ~v~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~-~~~~~~~~~~lr~i~~gGe 241 (369)
T 3hgu_A 163 MFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKR-PEVVLQMKQSLAQITLGGT 241 (369)
T ss_dssp CEECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTC-HHHHHHHHHHCSEEEEESS
T ss_pred EEECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhh-hhhhccccCCeeEEEECCc
Confidence 6666677777 888899999999999999999999875 2222345678999999999
Q ss_pred CCCHHHHHHHH-HhCCCCeeecccchhhcccccccCCCCCCCCcccccccc------cCCeEEEEEeCCCCccCCCCCcc
Q 037622 334 PANSKIIEDFV-GAFPHVDFIQGYGMTESTAVGTRGFNTKKFSKYFSVGLL------APNIQAKVVDWVNGCFLPPGSTG 406 (560)
Q Consensus 334 ~~~~~~~~~~~-~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~------~p~~~~~v~d~~~~~~~~~g~~G 406 (560)
++++++++++. +.||++++++.||+||+++++..+.. .++|.+ .|+++++|+|++++++++.|+.|
T Consensus 242 ~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-------~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~G 314 (369)
T 3hgu_A 242 ELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-------TSESQQVIYDSFSPFITYDVVDSITAQTVEYGERG 314 (369)
T ss_dssp CCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-------CTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEE
T ss_pred cCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-------ccCCCcccccCCCCCeEEEEECCCCCcCCCCCCce
Confidence 99999999999 99999999999999999877643321 147888 99999999997789999999999
Q ss_pred eEEEecccchhhhcCCchhhhhccCCCCceecCceEEEccC--C-------cEEEEccccceeeecce
Q 037622 407 ELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDED--G-------YLYIVDRLKEVIKYNGY 465 (560)
Q Consensus 407 el~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~--g-------~l~~~GR~~d~i~~~G~ 465 (560)
||+|++..-. .+ -..|+|||++.+.+. | .+..++|.++..++.|.
T Consensus 315 El~vt~l~~~------------~~--l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 315 NVIVTHLSPW------------AF--YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEEEEETT------------EE--EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EEEEEEcCcc------------cc--cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 9999874210 00 113889999888543 2 35667777777777664
No 37
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.55 E-value=6.7e-15 Score=118.18 Aligned_cols=94 Identities=19% Similarity=0.199 Sum_probs=71.8
Q ss_pred ccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCC----CHHHHHHHHHhccC-CCC
Q 037622 454 DRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTL----TEAAVIDYLAQRVA-PYK 528 (560)
Q Consensus 454 GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~~~l~-~~~ 528 (560)
||.||+|+++|++|+|.+||++|.++|+|.++++++.+++..++.++++++. ++... +.+++.+.+++++. .+.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~~ 79 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEIL 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhhC
Confidence 8999999999999999999999999999998888888777777888999888 55322 33455555555553 233
Q ss_pred CcceEEEec--CCCCCCCCcchH
Q 037622 529 KVRRVVFTK--SIPKSAAGKVLR 549 (560)
Q Consensus 529 ~p~~i~~~~--~lP~t~~GKi~r 549 (560)
.+..+.+++ .||+| +||++|
T Consensus 80 ~~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3gxs_A 80 VTPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp SCCEEEEECTTCSCCC----CCC
T ss_pred CceEEEEECCCCccCC-CCceEE
Confidence 444788887 89999 999987
No 38
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.52 E-value=1.8e-14 Score=115.91 Aligned_cols=95 Identities=20% Similarity=0.182 Sum_probs=72.5
Q ss_pred ccccceeeecceecChHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCH---HHHHHHHHhccCCC-CC
Q 037622 454 DRLKEVIKYNGYQISPADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTE---AAVIDYLAQRVAPY-KK 529 (560)
Q Consensus 454 GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~~~l~~~-~~ 529 (560)
.|.||||+++|.+|+|.|||++|.+||+|.++++++.+++..++.+.++|+..++...+. +++.+.+++++..+ .+
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv 80 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILV 80 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCC
Confidence 489999999999999999999999999999999999999998999999998877654443 34444455444322 23
Q ss_pred cceEEEe--cCCCCCCCCcchH
Q 037622 530 VRRVVFT--KSIPKSAAGKVLR 549 (560)
Q Consensus 530 p~~i~~~--~~lP~t~~GKi~r 549 (560)
+..++++ ++||+| +||++|
T Consensus 81 ~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 81 TPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp CCEEEEECTTCSCCC----CCC
T ss_pred ccceEEEcCCeecCC-CCCcch
Confidence 4456666 489998 799987
No 39
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=99.14 E-value=2.8e-10 Score=116.79 Aligned_cols=134 Identities=16% Similarity=0.152 Sum_probs=90.2
Q ss_pred CCc---cceeecccCCCCHHHHHHHHHhCCCCeee-cccchhhcccccccCCCCCCCCccccccc-ccCC-eEEEEEeCC
Q 037622 322 LKS---LKQVSSGAAPANSKIIEDFVGAFPHVDFI-QGYGMTESTAVGTRGFNTKKFSKYFSVGL-LAPN-IQAKVVDWV 395 (560)
Q Consensus 322 l~~---lr~~~~~g~~~~~~~~~~~~~~~~~~~i~-~~YG~tE~~~~~~~~~~~~~~~~~~~~G~-~~p~-~~~~v~d~~ 395 (560)
+++ +..++.||- ......++..+++.++. ..|++||+ .++.-. .+ ...+...+. .+|+ +..+.++.+
T Consensus 296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~--~p-~~~~~~~~~~L~~~~~ffEFip~~ 368 (581)
T 4eql_A 296 WPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSET-TFGINL--DP-LCKPEDVSYTFMPNMSYFEFIPMD 368 (581)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSC-EEEECS--CT-TSCGGGCCEEECTTSSEEEEEECS
T ss_pred CCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccc-eeeecc--CC-CCCcccCceeecCCcEEEEEEecc
Confidence 466 555666662 44456666666678887 99999994 333211 11 111122222 2333 455676532
Q ss_pred C--------CccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEcc----CCcEEEEccccceeeec
Q 037622 396 N--------GCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDE----DGYLYIVDRLKEVIKYN 463 (560)
Q Consensus 396 ~--------~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~l~~~GR~~d~i~~~ 463 (560)
+ ...|..|+.+||++++.+ |.|+ |++||++++.. ..++.|+||.+|++++.
T Consensus 369 ~~~~~~~v~l~eVe~G~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~ 431 (581)
T 4eql_A 369 GGDKNDVVDLEDVKLGCTYEPVVTNFA---GLYR--------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSID 431 (581)
T ss_dssp TTCCSSCEEGGGCCTTCEEEEEEECSS---SCCS--------------EECCEEEEEEEEETTEEEEEEEEETTEEECSS
T ss_pred ccCCCcEeCHHHcCCCceEEEEEeecc---ceee--------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEee
Confidence 2 145678999999998752 2222 99999999976 35899999999999999
Q ss_pred ceecChHHHHHHHhcC
Q 037622 464 GYQISPADLETVLICH 479 (560)
Q Consensus 464 G~~v~~~~IE~~l~~~ 479 (560)
|++++..+||++|.+.
T Consensus 432 Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 432 SDKTNEEDLFKAVSQA 447 (581)
T ss_dssp SCCEEHHHHHHHHHHC
T ss_pred eeECCHHHHHHHHHHH
Confidence 9999999999999744
No 40
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=99.11 E-value=7e-10 Score=113.93 Aligned_cols=132 Identities=16% Similarity=0.127 Sum_probs=88.4
Q ss_pred CCcc---ceeecccCCCCHHHHHHHHHhCCCCeee-cccchhhcccccccCCCCCCCCcccccc-cccCC-eEEEEEeCC
Q 037622 322 LKSL---KQVSSGAAPANSKIIEDFVGAFPHVDFI-QGYGMTESTAVGTRGFNTKKFSKYFSVG-LLAPN-IQAKVVDWV 395 (560)
Q Consensus 322 l~~l---r~~~~~g~~~~~~~~~~~~~~~~~~~i~-~~YG~tE~~~~~~~~~~~~~~~~~~~~G-~~~p~-~~~~v~d~~ 395 (560)
++++ ..++.|| + ......++..+++.++. ..|++||. .++....+ ...+...+ ..+|+ +-.+.++.+
T Consensus 301 WPnlk~l~~~~tG~--~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p---~~~p~~~~~~L~p~~~ffEFIP~~ 373 (609)
T 4b2g_A 301 WPNTKYLDVIVTGA--M-AQYIPTLDYYSGGLPLACTMYASSEC-YFGLNLNP---MSKPSEVSYTIMPNMAYFEFLPHE 373 (609)
T ss_dssp STTCCEEEEECSGG--G-GGGHHHHHHHHTSCCEECCEEECSSC-EEEECSCT---TSCGGGCCEEECTTSCEEEEEEGG
T ss_pred CCCCcEEEEEccCC--h-HHHHHHHHHHcCCCccccCcccccce-eeeeecCC---CCCcccCceeecCCcEEEEEEecc
Confidence 4664 4555566 2 34446666666677777 89999995 33321111 01112222 22333 445666532
Q ss_pred C---------------CccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEcc----CCcEEEEccc
Q 037622 396 N---------------GCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDE----DGYLYIVDRL 456 (560)
Q Consensus 396 ~---------------~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~l~~~GR~ 456 (560)
+ ...|..|+.+||+++..+ |.|+ |++||+++++. ...+.|+||.
T Consensus 374 ~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~~~~p~i~~~gR~ 436 (609)
T 4b2g_A 374 HSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYA---GLYR--------------YRVGDILRVTGFHNSAPQFHFVRRK 436 (609)
T ss_dssp GTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECTT---SCCS--------------EEEEEEEEEEEEETTEEEEEEEEET
T ss_pred ccccccccCCCCccccHhHcCCCCeEEEehhhhh---hhhh--------------eecCCEEEEeecCCCCcEEEEEEec
Confidence 2 145788999999998652 3443 99999999974 3689999999
Q ss_pred cceeeecceecChHHHHHHHh
Q 037622 457 KEVIKYNGYQISPADLETVLI 477 (560)
Q Consensus 457 ~d~i~~~G~~v~~~~IE~~l~ 477 (560)
++++++.|+++++.+||+++.
T Consensus 437 ~~~l~~~Geki~~~~v~~av~ 457 (609)
T 4b2g_A 437 NVLLSIDSDKTDEAELQKAVD 457 (609)
T ss_dssp TCCBCSSSCCBCHHHHHHHHH
T ss_pred CCeEEccccCCCHHHHHHHHH
Confidence 999999999999999999987
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=99.03 E-value=2.3e-09 Score=109.68 Aligned_cols=145 Identities=12% Similarity=0.045 Sum_probs=92.7
Q ss_pred CCccce--eecccCCCCHHHHHHHHHhCCCCeee-cccchhhcccccccCCCCCCCCcccccc-cccCC-eEEEEEeCCC
Q 037622 322 LKSLKQ--VSSGAAPANSKIIEDFVGAFPHVDFI-QGYGMTESTAVGTRGFNTKKFSKYFSVG-LLAPN-IQAKVVDWVN 396 (560)
Q Consensus 322 l~~lr~--~~~~g~~~~~~~~~~~~~~~~~~~i~-~~YG~tE~~~~~~~~~~~~~~~~~~~~G-~~~p~-~~~~v~d~~~ 396 (560)
+++++. ++.+|.. ......++..+++.++. ..|++||. .++.-. .+ ...++..+ ..+|+ +-.+.+..++
T Consensus 301 WPnl~~i~~~~~G~~--~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~--~p-~~~~~~~~~~L~p~~~ffEFiP~~~ 374 (581)
T 4epl_A 301 FPNAKYVYGIMTGSM--EPYVPKLRHYAGDLPLVSHDYGSSEG-WIAANV--TP-RLSPEEATFAVIPNLGYFEFLPVSE 374 (581)
T ss_dssp CTTCCCEEEECSGGG--GGGHHHHHHHHTTSCEEECCEEETTE-EEEECC--CT-TSCTTTCCEEECTTSCEEEEEEC--
T ss_pred CCCCceEEEEeCCCh--HHHHHHHHHHcCCCccccCceeccce-eeeeec--CC-CCCccccceeecCCcEEEEEEeccc
Confidence 567752 3344422 33446666666678877 99999995 333211 11 11111112 23343 3445554222
Q ss_pred ----------CccCCCCCcceEEEecccchhhhcCCchhhhhccCCCCceecCceEEEccC----CcEEEEccccceeee
Q 037622 397 ----------GCFLPPGSTGELWLRGPGTMKEYINNADATMSTIDKEGWLHTGDIAYFDED----GYLYIVDRLKEVIKY 462 (560)
Q Consensus 397 ----------~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~----g~l~~~GR~~d~i~~ 462 (560)
...|..|+.+||++++.+ |.|+ |++||++++..- ..+.|+||.++++++
T Consensus 375 ~~~~~~~~v~l~eve~G~~YelviTt~~---GL~R--------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~ 437 (581)
T 4epl_A 375 TGEGEEKPVGLTQVKIGEEYEVVITNYA---GLYR--------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSI 437 (581)
T ss_dssp -----CCCEEGGGCCTTCEEEEEEESTT---SCSS--------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS
T ss_pred ccCCCCceeeHHHcCCCCeEEEEEeecc---ceee--------------EEcCCEEEEecccCCCcEEEEEeecCCeEEe
Confidence 146788999999998752 2222 999999999753 579999999999999
Q ss_pred cceecChHHHHHHHhc------CC--CcccEEEEc
Q 037622 463 NGYQISPADLETVLIC------HP--EILDVAVTG 489 (560)
Q Consensus 463 ~G~~v~~~~IE~~l~~------~~--~v~~~~v~~ 489 (560)
.|++++..+||+++.+ .. .|.|..+..
T Consensus 438 ~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~ 472 (581)
T 4epl_A 438 NIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYI 472 (581)
T ss_dssp SSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEE
T ss_pred eeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEec
Confidence 9999999999999874 22 355666554
No 42
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=88.02 E-value=2.4 Score=42.15 Aligned_cols=86 Identities=13% Similarity=0.062 Sum_probs=68.5
Q ss_pred eecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCC--ChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceE
Q 037622 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNS--IYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKIS 144 (560)
Q Consensus 67 ~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~ 144 (560)
.+|.+.+...+..++..+.. +|+.++|++...++.+ ...+...++++..|+.+++.+. .+.+.+...++..++ .
T Consensus 109 ~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~--t 184 (437)
T 2y27_A 109 GYTAADIDTWANLVARSIRA-AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRP--D 184 (437)
T ss_dssp EECHHHHHHHHHHHHHHHHH-TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCC--S
T ss_pred ecCHHHHHHHHHHHHHHHHH-cCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCC--C
Confidence 58999999888888887777 7999999999888864 2334557888999999987765 478888899999999 7
Q ss_pred EEEeeccchHHh
Q 037622 145 LAFTIYENVDKL 156 (560)
Q Consensus 145 ~v~~~~~~~~~~ 156 (560)
+++..+..+..+
T Consensus 185 ~l~~~Ps~~~~l 196 (437)
T 2y27_A 185 IIMVTPSYMLSI 196 (437)
T ss_dssp EEEECHHHHHHH
T ss_pred EEEECHHHHHHH
Confidence 777776655544
No 43
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=87.46 E-value=2.7 Score=41.87 Aligned_cols=86 Identities=14% Similarity=0.098 Sum_probs=68.5
Q ss_pred eecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCC--hHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceE
Q 037622 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSI--YFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKIS 144 (560)
Q Consensus 67 ~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~ 144 (560)
.+|.+.+...+..++..+.. +|+.++|++...++-+. ..+...++++..|+.+++.++ .+.+.+...++..++ .
T Consensus 111 ~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~--t 186 (443)
T 2y4o_A 111 GYTARDIDTWANVTARSIRA-AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSG-GQTEKQVQLIRDFEP--K 186 (443)
T ss_dssp EECHHHHHHHHHHHHHHHHH-TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHCC--S
T ss_pred ecCHHHHHHHHHHHHHHHHH-cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCC-CCHHHHHHHHHHhCC--c
Confidence 58999999888888887777 89999999998888643 334557888899999988775 478888899999999 7
Q ss_pred EEEeeccchHHh
Q 037622 145 LAFTIYENVDKL 156 (560)
Q Consensus 145 ~v~~~~~~~~~~ 156 (560)
++...+..+..+
T Consensus 187 ~l~~~Ps~~~~l 198 (443)
T 2y4o_A 187 IILVTPSYMLNL 198 (443)
T ss_dssp EEEECHHHHHHH
T ss_pred EEEECHHHHHHH
Confidence 777766655444
No 44
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=86.46 E-value=3.1 Score=41.33 Aligned_cols=86 Identities=19% Similarity=0.025 Sum_probs=69.0
Q ss_pred eecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCC--ChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCCceE
Q 037622 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNS--IYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKTKIS 144 (560)
Q Consensus 67 ~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~ 144 (560)
.+|.+.+...+..++..+.. .|+.++|++....+-+ ...+..+++++..|+.+++.++ .+.+.+...++..++ .
T Consensus 105 ~~th~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~--t 180 (436)
T 3qov_A 105 VHSQHDLDSWANLVARCLYM-VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKFISDFKT--T 180 (436)
T ss_dssp EEEHHHHHHHHHHHHHHHHH-TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHTC--C
T ss_pred EECHHHHHHHHHHHHHHHHH-cCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHHCC--C
Confidence 58999999999888888877 7999999999988754 3344567888999999988765 477888889999999 8
Q ss_pred EEEeeccchHHh
Q 037622 145 LAFTIYENVDKL 156 (560)
Q Consensus 145 ~v~~~~~~~~~~ 156 (560)
+++..+.....+
T Consensus 181 ~~~~~P~~~~~l 192 (436)
T 3qov_A 181 ALHAIPSYAIRL 192 (436)
T ss_dssp EEECCHHHHHHH
T ss_pred EEEECHHHHHHH
Confidence 887777655544
No 45
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=80.75 E-value=9.3 Score=39.00 Aligned_cols=100 Identities=12% Similarity=0.014 Sum_probs=76.0
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
.++.+|++....| -.+|...+...+..++..+. ..++.++|++...++-...+- ..+++++..|+..+.
T Consensus 35 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~lA~~L~--~~Gv~~gd~V~i~~~~~~~~~--~~~la~~~~Gav~vp 103 (536)
T 3ni2_A 35 HSSKPCLINGANG-------DVYTYADVELTARRVASGLN--KIGIQQGDVIMLFLPSSPEFV--LAFLGASHRGAIITA 103 (536)
T ss_dssp STTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHH--HTTCCTTCEEEEECCSSHHHH--HHHHHHHHHTCEEEE
T ss_pred CCCceEEEECCCC-------CEEEHHHHHHHHHHHHHHHH--HcCCCCCCEEEEEcCCcHHHH--HHHHHHHHhCCEEec
Confidence 4677777653322 24789998888887776554 367889999999998765433 478889999999998
Q ss_pred eCC-cCHHHHHHHHHHhCcceeccCcHHHHHH
Q 037622 280 MRR-FEASEMLKVIDKYGVTHFPVVPPILMAL 310 (560)
Q Consensus 280 ~~~-~~~~~~~~~l~~~~~t~l~~~P~~~~~l 310 (560)
.++ ...+++...+++.++..++..+.....+
T Consensus 104 l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~ 135 (536)
T 3ni2_A 104 ANPFSTPAELAKHAKASRAKLLITQACYYEKV 135 (536)
T ss_dssp CCTTCCHHHHHHHHHHHTEEEEEECGGGTHHH
T ss_pred cCCCCCHHHHHHHHHhcCCEEEEEChHHHHHH
Confidence 875 6788999999999999999887655544
No 46
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=79.02 E-value=14 Score=37.73 Aligned_cols=106 Identities=9% Similarity=0.041 Sum_probs=78.0
Q ss_pred CCCCEEEEEcCCCC-CCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEE
Q 037622 200 RQQDTAAILYSSGT-TGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVV 278 (560)
Q Consensus 200 ~~~~~a~i~~TSGT-TG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v 278 (560)
.|+.+|++....+. .+. .-.+|...+...+..++..+. ..++.++|++..+++-...+- ..+++++..|+..+
T Consensus 32 ~p~~~A~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~--~~Gv~~gd~V~i~~~~~~~~~--~~~lA~~~~G~~~v 105 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSEF--PESMNFLEICEVTKKLASGIS--RKGVRKGEHVGVCIPNSIDYV--MTIYALWRVAATPV 105 (549)
T ss_dssp HTTSEEEEEESSCCCCSS--CSEEEHHHHHHHHHHHHHHHH--HTTCCTTCEEEEECCSSHHHH--HHHHHHHHTTCEEE
T ss_pred CCCceEEEeCCCcccccc--cceeeHHHHHHHHHHHHHHHH--HcCCCCCCEEEEECCCCHHHH--HHHHHHHHhCCEEE
Confidence 35677776543211 121 235788888888877776554 357889999999998765443 47888999999999
Q ss_pred EeCC-cCHHHHHHHHHHhCcceeccCcHHHHHHH
Q 037622 279 VMRR-FEASEMLKVIDKYGVTHFPVVPPILMALT 311 (560)
Q Consensus 279 ~~~~-~~~~~~~~~l~~~~~t~l~~~P~~~~~l~ 311 (560)
..++ ...+++...+++.+++.++..+.....+.
T Consensus 106 pl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~ 139 (549)
T 3g7s_A 106 PINPMYKSFELEHILNDSEATTLVVHSMLYENFK 139 (549)
T ss_dssp ECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHH
T ss_pred ccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHH
Confidence 8874 67889999999999999998887665553
No 47
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=78.43 E-value=12 Score=37.85 Aligned_cols=99 Identities=12% Similarity=0.040 Sum_probs=76.6
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
.|+.+|++.- .-.+|.+.+...+..++..+. ..++.++|++..+++-...+- ..+++++..|+..+.
T Consensus 19 ~pd~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~--~~Gv~~gd~V~i~~~~~~~~~--~~~lA~~~~Ga~~vp 85 (509)
T 3ivr_A 19 FPDRTAFMVD---------GVRLTHRDYLARAERLASGLL--RDGVHTGDRVAILSQNCSEMI--ELIGAVALIGAILLP 85 (509)
T ss_dssp STTSEEEEET---------TEEEEHHHHHHHHHHHHHHHH--HTTCCTTCEEEEECCSCHHHH--HHHHHHHHTTCEEEE
T ss_pred CCCceEEEEC---------CcEEcHHHHHHHHHHHHHHHH--HcCCCCCCEEEEEcCCCHHHH--HHHHHHHHhCCEEEe
Confidence 4567776641 135899999888888777554 357889999999998765433 478889999999998
Q ss_pred eCC-cCHHHHHHHHHHhCcceeccCcHHHHHHH
Q 037622 280 MRR-FEASEMLKVIDKYGVTHFPVVPPILMALT 311 (560)
Q Consensus 280 ~~~-~~~~~~~~~l~~~~~t~l~~~P~~~~~l~ 311 (560)
.++ ...+++...+++.++..++..+.....+.
T Consensus 86 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 118 (509)
T 3ivr_A 86 VNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVA 118 (509)
T ss_dssp CCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHH
T ss_pred cCCCCCHHHHHHHHHhcCceEEEECcchhhhHH
Confidence 875 67889999999999999999887766543
No 48
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=73.62 E-value=16 Score=37.32 Aligned_cols=103 Identities=6% Similarity=-0.067 Sum_probs=76.2
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
.++.+|++....+ ....+|...+...+..++..+. ..++.++|++...++-...+- ..+++++..|+..+.
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~--~~Gv~~gd~V~i~~~n~~e~~--~~~lA~~~~Gav~vp 101 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLR--ALGVGVGDRVATLGFNHFRHL--EAYFAVPGMGAVLHT 101 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHH--HTTCCTTCEEEEECCSSHHHH--HHHHHHHHTTCEEEE
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHH--HcCCCCCCEEEEEcCCcHHHH--HHHHHHHhcCcEEEe
Confidence 3566666543211 1235788888888877776554 357889999999998765443 478889999999998
Q ss_pred eCC-cCHHHHHHHHHHhCcceeccCcHHHHHHH
Q 037622 280 MRR-FEASEMLKVIDKYGVTHFPVVPPILMALT 311 (560)
Q Consensus 280 ~~~-~~~~~~~~~l~~~~~t~l~~~P~~~~~l~ 311 (560)
.++ ...+++...+++.++..++..+.....+.
T Consensus 102 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 134 (541)
T 1v25_A 102 ANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVE 134 (541)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHH
T ss_pred cCcccCHHHHHHHHHhCCCcEEEEChhHHHHHH
Confidence 874 67889999999999999999887665543
No 49
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=72.93 E-value=20 Score=36.04 Aligned_cols=100 Identities=19% Similarity=0.172 Sum_probs=73.1
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
.|+.+|++... +| ..+|++.+...+..++..+. ..++.++|++..+++-...+- ..+++++..|+..+.
T Consensus 15 ~p~~~a~~~~~---~~----~~~Ty~el~~~~~~~A~~L~--~~Gv~~gd~V~i~~~~~~~~~--~~~lA~~~~G~~~vp 83 (504)
T 1t5h_X 15 APDHCALAVPA---RG----LRLTHAELRARVEAVAARLH--ADGLRPQQRVAVVAPNSADVV--IAILALHRLGAVPAL 83 (504)
T ss_dssp CTTSEEEEETT---TT----EEEEHHHHHHHHHHHHHHHH--HTTCCTTCEEEEECCSCHHHH--HHHHHHHHHTCEEEE
T ss_pred CCCceEEEEcC---CC----ceeEHHHHHHHHHHHHHHHH--HcCCCCCCEEEEEcCCCHHHH--HHHHHHHHhCcEEEe
Confidence 45667766532 12 35899998888877776554 357889999999998765443 478889999999998
Q ss_pred eCC-cCHHHHHHHHHHhCcceecc--CcHHHHHH
Q 037622 280 MRR-FEASEMLKVIDKYGVTHFPV--VPPILMAL 310 (560)
Q Consensus 280 ~~~-~~~~~~~~~l~~~~~t~l~~--~P~~~~~l 310 (560)
.++ ...+++...+++.+++.++. .+.....+
T Consensus 84 l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 84 LNPRLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp ECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred cCCccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 875 67888999999999999888 66555444
No 50
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=70.82 E-value=16 Score=37.20 Aligned_cols=98 Identities=16% Similarity=0.082 Sum_probs=73.7
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
.++.+|++.. | ..+|...+...+..++..+. ..++.++|++...++-...+- ..+++++..|+..+.
T Consensus 36 ~p~~~A~~~~--~-------~~~Ty~el~~~~~~lA~~L~--~~Gv~~gd~V~i~~~n~~~~~--~~~lA~~~~G~~~vp 102 (529)
T 2v7b_A 36 RAGKTAYIDD--T-------GSTTYGELEERARRFASALR--TLGVHPEERILLVMLDTVALP--VAFLGALYAGVVPVV 102 (529)
T ss_dssp GTTSEEEECS--S-------CEEEHHHHHHHHHHHHHHHH--HTTCCTTCEEEEECCSSTHHH--HHHHHHHHHTCEEEE
T ss_pred cCCceEEEeC--C-------CCccHHHHHHHHHHHHHHHH--HcCCCCCCEEEEEcCCcHHHH--HHHHHHHHcCceEEe
Confidence 4566666532 2 24789998888877776554 357889999999998765433 477888999999998
Q ss_pred eCC-cCHHHHHHHHHHhCcceeccCcHHHHHH
Q 037622 280 MRR-FEASEMLKVIDKYGVTHFPVVPPILMAL 310 (560)
Q Consensus 280 ~~~-~~~~~~~~~l~~~~~t~l~~~P~~~~~l 310 (560)
.++ ...+++...+++.++..++..+.....+
T Consensus 103 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 134 (529)
T 2v7b_A 103 ANTLLTPADYVYMLTHSHARAVIASGALVQNV 134 (529)
T ss_dssp CCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHH
T ss_pred cCcccCHHHHHHHHhccCCeEEEechhhhhHH
Confidence 774 6788999999999999998887665444
No 51
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=70.12 E-value=19 Score=37.06 Aligned_cols=98 Identities=15% Similarity=0.147 Sum_probs=73.9
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
.|+.+|++..... |. ...+|.+.+...+..++..+. ..+++++|++..+++-...+- ..+++++..|+..+.
T Consensus 69 ~pd~~Al~~~~~~--g~--~~~~Ty~eL~~~~~~~A~~L~--~~Gv~~Gd~V~l~~~~~~e~~--~~~lA~~~~Gav~vp 140 (580)
T 3etc_A 69 SPEKLAMIWCDDY--GN--EKIFTFKDLKYYSDKAANFFV--KHGIGKGDYVMLTLKSRYDFW--YCMLGLHKLGAIAVP 140 (580)
T ss_dssp CTTCEEEEEEESS--SC--EEEEEHHHHHHHHHHHHHHHH--HTTCCTTCEEEEECTTCTHHH--HHHHHHHHHTCEEEE
T ss_pred CCCCEEEEEEcCC--CC--EeEEeHHHHHHHHHHHHHHHH--HcCCCCCCEEEEEcCCCHHHH--HHHHHHHhCCEEEEe
Confidence 5778887764321 21 245788888888777776554 467889999999998765443 478889999999998
Q ss_pred eCC-cCHHHHHHHHHHhCcceeccCcH
Q 037622 280 MRR-FEASEMLKVIDKYGVTHFPVVPP 305 (560)
Q Consensus 280 ~~~-~~~~~~~~~l~~~~~t~l~~~P~ 305 (560)
.++ ...+++...+++.++..+++.+.
T Consensus 141 l~~~~~~~~l~~~l~~~~~~~ii~~~~ 167 (580)
T 3etc_A 141 ATHMLKTRDIVYRIEKAGLKMIVCIAE 167 (580)
T ss_dssp CCTTCCHHHHHHHHHHHTCCEEEEESS
T ss_pred CCccCCHHHHHHHHHhcCCCEEEEecc
Confidence 774 67889999999999999887653
No 52
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=69.71 E-value=15 Score=37.59 Aligned_cols=88 Identities=14% Similarity=0.088 Sum_probs=69.9
Q ss_pred hhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCC-cCHHHHHHHHHHhCcce
Q 037622 221 ELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRR-FEASEMLKVIDKYGVTH 299 (560)
Q Consensus 221 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t~ 299 (560)
.+|.+.+...+..++..+. ..++.++|++..+++-...+- ..+++++..|+..+..++ ...+++...+++.+++.
T Consensus 50 ~~Ty~el~~~~~~lA~~L~--~~Gv~~gd~V~i~~~n~~e~~--~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ 125 (550)
T 3rix_A 50 NITYAEYFEMSVRLAEAMK--RYGLNTNHRIVVCSENSLQFF--MPVLGALFIGVAVAPANDIYNERELLNSMNISQPTV 125 (550)
T ss_dssp EEEHHHHHHHHHHHHHHHH--HHTCCTTCEEEEECSSCTTTH--HHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSE
T ss_pred EeEHHHHHHHHHHHHHHHH--HhCCCCCCEEEEEcCCcccHH--HHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeE
Confidence 5789998888887776554 357889999999998654433 478889999999998874 67889999999999999
Q ss_pred eccCcHHHHHHHH
Q 037622 300 FPVVPPILMALTK 312 (560)
Q Consensus 300 l~~~P~~~~~l~~ 312 (560)
+++.......+..
T Consensus 126 vi~~~~~~~~~~~ 138 (550)
T 3rix_A 126 VFVSKKGLQKILN 138 (550)
T ss_dssp EEECGGGHHHHHH
T ss_pred EEEcHHHHHHHHH
Confidence 9998877665543
No 53
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=69.25 E-value=12 Score=35.98 Aligned_cols=85 Identities=13% Similarity=0.099 Sum_probs=61.2
Q ss_pred eecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCC--hHHHHHHHHHHhCCeEeccCCCCCHH--------------
Q 037622 67 SISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSI--YFPVIFLALLYLGAIVIPMNPLLSVS-------------- 130 (560)
Q Consensus 67 ~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~--~~~~~~lA~~~~G~~~v~l~~~~~~~-------------- 130 (560)
.+|.+.+...+..++..+.. .|+.++|++..+++-+. ......++++..|+.+++.+ +++.
T Consensus 110 ~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~~ 186 (369)
T 3hgu_A 110 VAYDAWIEALISWRMSGYQH-RPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTATV 186 (369)
T ss_dssp EECHHHHHHHHHHHTTTTTT-STTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHHH
T ss_pred EECHHHHHHHHHHHHhhHHh-hCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhhh
Confidence 58999999888877777777 79999999999888632 33444556688999655543 4444
Q ss_pred ---------HHHHHHHhcCCceEEEEeeccchHHh
Q 037622 131 ---------EIKKQVTLCKTKISLAFTIYENVDKL 156 (560)
Q Consensus 131 ---------~l~~~l~~~~~~~~~v~~~~~~~~~~ 156 (560)
.+...++..++ .+++..+.....+
T Consensus 187 ~~~~~~~~~~~~~~i~~~~~--t~l~~~Ps~~~~l 219 (369)
T 3hgu_A 187 RKYTHHLVDQVQNTLMNQDI--RFLVTTPPVLREL 219 (369)
T ss_dssp HHHHHHHHHHHHHHHHHSCE--EEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCC--CEEEeCHHHHHHH
Confidence 56667788888 8877776655554
No 54
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=69.15 E-value=21 Score=35.62 Aligned_cols=106 Identities=12% Similarity=0.031 Sum_probs=77.7
Q ss_pred CCCCEEEEEcCC--CCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEE
Q 037622 200 RQQDTAAILYSS--GTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSV 277 (560)
Q Consensus 200 ~~~~~a~i~~TS--GTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~ 277 (560)
.|+.+|++.... +.+| ....+|.+.+...+..++..+.. .+. ++|++..+++-...+- ..+++++..|+..
T Consensus 37 ~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~~~~~~lA~~L~~--~g~-~gd~V~i~~~n~~e~~--~~~lA~~~~G~v~ 109 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDG--VAITLTWSQLYRRTLNVAQELSR--CGS-TGDRVVISAPQGLEYV--VAFLGALQAGRIA 109 (480)
T ss_dssp STTSEEEEEEETTTCTTC--EEEEEEHHHHHHHHHHHHHHHTT--SSC-TTCEEEEECCSSHHHH--HHHHHHHHTTCEE
T ss_pred CCCCceEEEecccCCCCC--ceEEEcHHHHHHHHHHHHHHHHh--cCC-CCCEEEEEcCCcHHHH--HHHHHHHHhCcEE
Confidence 467777765432 2233 22468999998888888876542 344 8899998888765443 4788899999999
Q ss_pred EEeCC----cCHHHHHHHHHHhCcceeccCcHHHHHHHH
Q 037622 278 VVMRR----FEASEMLKVIDKYGVTHFPVVPPILMALTK 312 (560)
Q Consensus 278 v~~~~----~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~ 312 (560)
+..+. ...+++...+++.++..++..+.....+..
T Consensus 110 vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 110 VPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp EEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred EeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 98864 356788899999999999999887776654
No 55
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=68.40 E-value=22 Score=36.04 Aligned_cols=100 Identities=12% Similarity=0.067 Sum_probs=74.9
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
.|+.+|++.. | ....+|...+...+..++..+. ..++.++|++..+++-...+- ..+++++..|+..+.
T Consensus 29 ~p~~~A~~~~--~-----~~~~~Ty~eL~~~~~~lA~~L~--~~Gv~~gd~V~i~~~~~~~~~--~~~lA~~~~G~~~vp 97 (517)
T 3r44_A 29 SPRLQAYVEP--S-----TDVRMTYAQMNALANRCADVLT--ALGIAKGDRVALLMPNSVEFC--CLFYGAAKLGAVAVP 97 (517)
T ss_dssp STTSEEEEEG--G-----GTEEEEHHHHHHHHHHHHHHHH--HTTCCTTCEEEEECCSSHHHH--HHHHHHHHHTCEEEE
T ss_pred CCCCeEEEeC--C-----cCceeeHHHHHHHHHHHHHHHH--HcCCCCcCEEEEEcCCCHHHH--HHHHHHHHhCcEEEe
Confidence 4567776653 1 1235889998888877776554 357889999999999765443 478889999999998
Q ss_pred eCC-cCHHHHHHHHHHhCcceeccCcHHHHHH
Q 037622 280 MRR-FEASEMLKVIDKYGVTHFPVVPPILMAL 310 (560)
Q Consensus 280 ~~~-~~~~~~~~~l~~~~~t~l~~~P~~~~~l 310 (560)
.++ ...+++...+++.++..++..+.....+
T Consensus 98 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 129 (517)
T 3r44_A 98 INTRLAAPEVSFILSDSGSKVVIYGAPSAPVI 129 (517)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred cCcccCHHHHHHHHHhcCceEEEECCchHHHH
Confidence 874 6788999999999999998876654443
No 56
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=68.15 E-value=16 Score=37.42 Aligned_cols=86 Identities=8% Similarity=-0.017 Sum_probs=67.4
Q ss_pred hhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCC-cCHHHHHHHHHHhCcce
Q 037622 221 ELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRR-FEASEMLKVIDKYGVTH 299 (560)
Q Consensus 221 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t~ 299 (560)
.+|...+...+..++..+. ..++.++|++..+++-...+- ..+++++..|+..+..++ ...+++...+++.++..
T Consensus 52 ~~Ty~el~~~~~~lA~~L~--~~Gv~~gd~V~i~~~n~~e~~--~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ 127 (548)
T 2d1s_A 52 DYSYAEYLEKSCCLGKALQ--NYGLVVDGRIALCSENCEEFF--IPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTI 127 (548)
T ss_dssp EEEHHHHHHHHHHHHHHHH--HHTCCTTCEEEEECSSCTTTH--HHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSE
T ss_pred EeeHHHHHHHHHHHHHHHH--HcCCCCCCEEEEEeCCchhHH--HHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeE
Confidence 4789888888877776544 357889999999988654433 377888899999998874 67889999999999999
Q ss_pred eccCcHHHHHH
Q 037622 300 FPVVPPILMAL 310 (560)
Q Consensus 300 l~~~P~~~~~l 310 (560)
++..+.....+
T Consensus 128 vi~~~~~~~~~ 138 (548)
T 2d1s_A 128 VFSSKKGLDKV 138 (548)
T ss_dssp EEECTTTHHHH
T ss_pred EEEcHHHHHHH
Confidence 98887655444
No 57
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=66.66 E-value=20 Score=36.79 Aligned_cols=104 Identities=13% Similarity=0.089 Sum_probs=76.0
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccc-cCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYE-YLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVV 278 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v 278 (560)
.|+.+|++.... .| ....+|.+.+...+..++..+. .. ++.++|++..+++-...+- ..+++++..|+..+
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~--~~~Gv~~gd~V~i~~~n~~e~~--~~~lA~~~~Ga~~v 127 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLS--GACGLQRGDRVAVVLPRVPEWW--LVILGCIRAGLIFM 127 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHH--TTTCCCTTCEEEEECCSCHHHH--HHHHHHHHHTCEEE
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHH--HccCCCCCCEEEEEcCCCHHHH--HHHHHHHHcCeEEE
Confidence 456777665321 12 1235788888888877776543 23 7789999999998765443 47888899999999
Q ss_pred EeCC-cCHHHHHHHHHHhCcceeccCcHHHHHHH
Q 037622 279 VMRR-FEASEMLKVIDKYGVTHFPVVPPILMALT 311 (560)
Q Consensus 279 ~~~~-~~~~~~~~~l~~~~~t~l~~~P~~~~~l~ 311 (560)
..++ ...+++...+++.++..++..+.....+.
T Consensus 128 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 161 (570)
T 3c5e_A 128 PGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVD 161 (570)
T ss_dssp ECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHH
T ss_pred ecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHH
Confidence 8875 67889999999999999988877665543
No 58
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=65.74 E-value=24 Score=35.54 Aligned_cols=82 Identities=10% Similarity=-0.008 Sum_probs=66.0
Q ss_pred hhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCC-cCHHHHHHHHHHhCcce
Q 037622 221 ELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRR-FEASEMLKVIDKYGVTH 299 (560)
Q Consensus 221 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t~ 299 (560)
.+|.+.+...+..++..+. ..++.++|++...++-...+- ..+++++..|+..+..++ ...+++...+++.++..
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~--~~Gv~~gd~V~i~~~~~~~~~--~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~ 103 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLV--ARGLQVGDRVAAQTEKSVEAL--VLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKI 103 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHH--HTTCCTTCEEEEECCSCHHHH--HHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSE
T ss_pred EEEHHHHHHHHHHHHHHHH--HcCCCCCCEEEEECCCCHHHH--HHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcE
Confidence 4788888888877776554 357889999999998765443 478889999999998875 67889999999999999
Q ss_pred eccCcHH
Q 037622 300 FPVVPPI 306 (560)
Q Consensus 300 l~~~P~~ 306 (560)
+++.+..
T Consensus 104 vi~~~~~ 110 (503)
T 4fuq_A 104 VVCDPSK 110 (503)
T ss_dssp EEECGGG
T ss_pred EEECchh
Confidence 9887654
No 59
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=65.59 E-value=27 Score=35.80 Aligned_cols=98 Identities=10% Similarity=0.090 Sum_probs=73.6
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
.|+.+|++.. .-.+|.+.+...+..++..+. ..++.++|++...++-...+- ..+++++..|+..+.
T Consensus 52 ~p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~--~~Gv~~gd~V~i~~~n~~e~~--~~~lA~~~~Gav~vp 118 (563)
T 1amu_A 52 RPNNVAIVCE---------NEQLTYHELNVKANQLARIFI--EKGIGKDTLVGIMMEKSIDLF--IGILAVLKAGGAYVP 118 (563)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHH--HTTCCTTCEEEEECCSSHHHH--HHHHHHHHTTCEEEE
T ss_pred CCCCeEEEeC---------CceecHHHHHHHHHHHHHHHH--HcCCCCCCEEEEEeCCCHHHH--HHHHHHHHhCCEEEE
Confidence 4566776531 124788888888777776543 357889999999998765433 478889999999998
Q ss_pred eCC-cCHHHHHHHHHHhCcceeccCcHHHHHH
Q 037622 280 MRR-FEASEMLKVIDKYGVTHFPVVPPILMAL 310 (560)
Q Consensus 280 ~~~-~~~~~~~~~l~~~~~t~l~~~P~~~~~l 310 (560)
.++ ...+++...+++.++..++..+.....+
T Consensus 119 l~~~~~~~~l~~il~~~~~~~li~~~~~~~~~ 150 (563)
T 1amu_A 119 IDIEYPKERIQYILDDSQARMLLTQKHLVHLI 150 (563)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred eCCCCcHHHHHHHHHhcCCCEEEEcCchhhhh
Confidence 875 6788999999999999999887655443
No 60
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=64.40 E-value=44 Score=35.04 Aligned_cols=100 Identities=13% Similarity=0.108 Sum_probs=73.5
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
.++.+|++.... .+|. ...+|.+.+...+..++..+.. ..++.++|++..++|...-+- ..+++++..|+..+.
T Consensus 95 ~pd~~Al~~~~~-~~~~--~~~~TY~eL~~~v~~lA~~L~~-~~Gv~~Gd~V~i~~~~~~e~v--~a~lA~~~~Gav~vp 168 (663)
T 1ry2_A 95 TPNKKAIIFEGD-EPGQ--GYSITYKELLEEVCQVAQVLTY-SMGVRKGDTVAVYMPMVPEAI--ITLLAISRIGAIHSV 168 (663)
T ss_dssp CTTSEEEEEECS-STTC--CEEEEHHHHHHHHHHHHHHHHH-TSCCCTTCEEEECCCSSHHHH--HHHHHHHHTTCEEEE
T ss_pred CCCceEEEEEcC-CCCc--eEEEEHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEcCCCHHHH--HHHHHHHHcCCEEEe
Confidence 456777765422 1221 2358899998888877765430 246789999999999765443 478889999999888
Q ss_pred eC-CcCHHHHHHHHHHhCcceeccCcH
Q 037622 280 MR-RFEASEMLKVIDKYGVTHFPVVPP 305 (560)
Q Consensus 280 ~~-~~~~~~~~~~l~~~~~t~l~~~P~ 305 (560)
.. .+..+.+...+++.++.++++...
T Consensus 169 l~~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 169 VFAGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred eCCCCCHHHHHHHHHhcCCeEEEEccc
Confidence 76 478999999999999999887654
No 61
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=60.71 E-value=35 Score=34.71 Aligned_cols=92 Identities=15% Similarity=0.027 Sum_probs=70.3
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
.|+.+|++.- .-.+|.+.+...+..++..+. ..++.++|++...++-...+- ..+++++..|+..+.
T Consensus 43 ~p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~--~~Gv~~gd~V~i~~~n~~~~~--~~~lA~~~~Gav~vp 109 (544)
T 3o83_A 43 HPHSLAIICG---------ERQLSYIELDRLSTNLATRLA--EKGLGKGDTALVQLPNVAEFY--IVFFALLKAGVVVLN 109 (544)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHH--HTTCCTTCEEEECCCSSHHHH--HHHHHHHHHTCEEEE
T ss_pred CCCceEEEcC---------CCceeHHHHHHHHHHHHHHHH--HCCCCCCCEEEEECCCCHHHH--HHHHHHHHhCcEEec
Confidence 4677777641 235889998888877776554 357889999999998655443 478888999999887
Q ss_pred eC-CcCHHHHHHHHHHhCcceeccCc
Q 037622 280 MR-RFEASEMLKVIDKYGVTHFPVVP 304 (560)
Q Consensus 280 ~~-~~~~~~~~~~l~~~~~t~l~~~P 304 (560)
.+ ....+++...+++.++..++...
T Consensus 110 l~~~~~~~~l~~~l~~~~~~~li~~~ 135 (544)
T 3o83_A 110 ALYSHRQYELNAFIKQIQPKLLIGSR 135 (544)
T ss_dssp CCTTCCHHHHHHHHHHHCCSEEEEET
T ss_pred CCCCCCHHHHHHHHHhcCeeEEEEcc
Confidence 76 46788899999999999988765
No 62
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=60.12 E-value=38 Score=37.50 Aligned_cols=99 Identities=12% Similarity=0.027 Sum_probs=75.2
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
.|+.+|++...+| -.+|.+.+...+..++..+. ..++.++|++..+++-...+ ...+++++..|+..+.
T Consensus 74 ~pd~~Al~~~~~~-------~~~TY~eL~~~~~~lA~~L~--~~Gv~~gd~V~i~~~ns~e~--~v~~lA~~~~Ga~~vp 142 (979)
T 3tsy_A 74 FATKPCLINGPTG-------HVYTYSDVHVISRQIAANFH--KLGVNQNDVVMLLLPNCPEF--VLSFLAASFRGATATA 142 (979)
T ss_dssp TTTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHH--HTTCCTTCEEEEECSSCHHH--HHHHHHHHHHTCEEEE
T ss_pred CCCCeEEEECCCC-------cEEEHHHHHHHHHHHHHHHH--HcCCCCcCEEEEEeCCCHHH--HHHHHHHHHcCCEEEe
Confidence 4677887653322 34788888888877776554 36788999999999976443 3478889999999998
Q ss_pred eCC-cCHHHHHHHHHHhCcceeccCcHHHHH
Q 037622 280 MRR-FEASEMLKVIDKYGVTHFPVVPPILMA 309 (560)
Q Consensus 280 ~~~-~~~~~~~~~l~~~~~t~l~~~P~~~~~ 309 (560)
.++ ..++++...+++.++..++..+.....
T Consensus 143 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 173 (979)
T 3tsy_A 143 ANPFFTPAEIAKQAKASNTKLIITEARYVDK 173 (979)
T ss_dssp ECTTSCHHHHHHHHHHHTEEEEEECSTTTTT
T ss_pred eCCCCCHHHHHHHHHHcCCeEEEEChHHHHH
Confidence 874 678899999999999999887765433
No 63
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=59.33 E-value=74 Score=31.74 Aligned_cols=98 Identities=11% Similarity=0.107 Sum_probs=70.4
Q ss_pred CCCceEEEE---CCCC----ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCCh-HHHHHHHHHHhCCeEeccC
Q 037622 53 HNGRTALVD---SLSG----YSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIY-FPVIFLALLYLGAIVIPMN 124 (560)
Q Consensus 53 ~~~~~a~~~---~~~~----~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~v~l~ 124 (560)
.++.+|.+. +.+| -.+|++.+...+..+.. . +++.++|++...+|-.-. .+..+++++..|+.++..+
T Consensus 161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~---~-~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~ 236 (501)
T 3ipl_A 161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE---S-LGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD 236 (501)
T ss_dssp CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHH---H-TCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS
T ss_pred CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHH---h-hCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC
Confidence 345666653 3333 36899988877665543 3 688999999888876533 3344678888999988776
Q ss_pred CCCCHHHHHHHHHhcCCceEEEEeeccchHHhh
Q 037622 125 PLLSVSEIKKQVTLCKTKISLAFTIYENVDKLR 157 (560)
Q Consensus 125 ~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~ 157 (560)
..+++.+...++..++ ..+...+.....+.
T Consensus 237 -~~~~~~~~~~i~~~~~--t~~~~~P~~~~~l~ 266 (501)
T 3ipl_A 237 -KFNAEQILTMIKNERI--THISLVPQTLNWLM 266 (501)
T ss_dssp -SCCHHHHHHHHHHSCC--CEEEECHHHHHHHH
T ss_pred -CCCHHHHHHHHHHcCC--cEEEchHHHHHHHH
Confidence 4788999999999999 88877776655554
No 64
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=59.23 E-value=35 Score=34.98 Aligned_cols=94 Identities=13% Similarity=0.085 Sum_probs=71.9
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
.|+.+|++.. .-.+|.+.+...+..++..+. ..++.++|++...++-...+- ..+++++..|+..+.
T Consensus 88 ~pd~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~--~~Gv~~gd~V~i~~~n~~~~~--~~~lA~~~~G~~~vp 154 (570)
T 4gr5_A 88 APDAVALLHE---------ADELTYGALNERANRLAHRLV--GLGVAPGTLVGVHLERGFDMV--VALLAVLKAGGGYTM 154 (570)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHH--HTTCCTTCEEEEECCSSHHHH--HHHHHHHHTTCEEEE
T ss_pred CCCCeEEECC---------CCcEeHHHHHHHHHHHHHHHH--HcCCCCCCEEEEEeCCCHHHH--HHHHHHHHHCCEEEE
Confidence 4566776541 124899999888887776554 357889999999998765443 478889999999998
Q ss_pred eCC-cCHHHHHHHHHHhCcceeccCcHH
Q 037622 280 MRR-FEASEMLKVIDKYGVTHFPVVPPI 306 (560)
Q Consensus 280 ~~~-~~~~~~~~~l~~~~~t~l~~~P~~ 306 (560)
.++ ...+++...+++.++..++.....
T Consensus 155 l~~~~~~~~l~~~l~~~~~~~~i~~~~~ 182 (570)
T 4gr5_A 155 LDPQFPVERLALSLEDTGAPLLVTSRPL 182 (570)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEECTTT
T ss_pred cCCCChHHHHHHHHHhcCCCEEEecchh
Confidence 875 678899999999999998876544
No 65
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=58.60 E-value=28 Score=36.46 Aligned_cols=97 Identities=14% Similarity=0.064 Sum_probs=72.0
Q ss_pred CCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEe
Q 037622 201 QQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVM 280 (560)
Q Consensus 201 ~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 280 (560)
++.+|++... ..+|. .-.+|...+...+..++..+. ..+++++|++..++|...-+- ..+++++..|+..+..
T Consensus 90 pd~~Al~~~~-~~~~~--~~~lTY~eL~~~v~~lA~~L~--~~Gv~~Gd~V~i~~~~~~e~v--va~lA~~~~Gav~vpl 162 (652)
T 1pg4_A 90 GDRTAIIWEG-DDTSQ--SKHISYRELHRDVCRFANTLL--DLGIKKGDVVAIYMPMVPEAA--VAMLACARIGAVHSVI 162 (652)
T ss_dssp TTSEEEEEEC-SSTTC--EEEEEHHHHHHHHHHHHHHHH--HHTCCTTCEEEEECCSSHHHH--HHHHHHHHHTCEEEEC
T ss_pred CCceEEEEEc-CCCCc--eeEEeHHHHHHHHHHHHHHHH--HcCCCCCCEEEEEeCCCHHHH--HHHHHHHHcCcEEEec
Confidence 5667766432 22222 235788888888877776554 367889999999999765443 4788889999998887
Q ss_pred C-CcCHHHHHHHHHHhCcceeccCc
Q 037622 281 R-RFEASEMLKVIDKYGVTHFPVVP 304 (560)
Q Consensus 281 ~-~~~~~~~~~~l~~~~~t~l~~~P 304 (560)
. .+.++.+...+++.++..++...
T Consensus 163 ~~~~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 163 FGGFSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEES
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 6 47889999999999999988754
No 66
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=57.54 E-value=49 Score=28.88 Aligned_cols=91 Identities=20% Similarity=0.160 Sum_probs=56.0
Q ss_pred CcEEEEecC-hhhHHhHHHHHHHHhhCCCEEEEeC-CcCHHHHHHHHHHhCcceecc--Cc----HH--HHHHHHhhhcc
Q 037622 248 EAVFLAVLP-MFHIYGLSLFALGLLSLGPSVVVMR-RFEASEMLKVIDKYGVTHFPV--VP----PI--LMALTKAAKGL 317 (560)
Q Consensus 248 ~~~~~~~~p-~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~l~~--~P----~~--~~~l~~~~~~~ 317 (560)
+.+++.+.+ =.|..|........-..|-.++... ...++.+.+.+.+++++.+.. +- ++ +..+.+...
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~-- 170 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLN-- 170 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHH--
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHH--
Confidence 344444444 3677777655555667888887765 467999999999999997776 32 22 222322211
Q ss_pred CCCCC-CccceeecccCCCCHHHHHH
Q 037622 318 CGNSL-KSLKQVSSGAAPANSKIIED 342 (560)
Q Consensus 318 ~~~~l-~~lr~~~~~g~~~~~~~~~~ 342 (560)
...+ ..++ +++||.+++++..+.
T Consensus 171 -~~~~~~~v~-v~vGG~~~~~~~a~~ 194 (215)
T 3ezx_A 171 -EEKLRDSVK-CMFGGAPVSDKWIEE 194 (215)
T ss_dssp -HTTCGGGSE-EEEESSSCCHHHHHH
T ss_pred -HcCCCCCCE-EEEECCCCCHHHHHH
Confidence 1122 1233 788999999775544
No 67
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=55.23 E-value=59 Score=33.13 Aligned_cols=87 Identities=8% Similarity=-0.071 Sum_probs=67.8
Q ss_pred hhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCC-cC-------HHHHHHHH
Q 037622 221 ELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRR-FE-------ASEMLKVI 292 (560)
Q Consensus 221 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~-------~~~~~~~l 292 (560)
.+|.+.+...+..++..+. ..++.++|++..+++-...+- ..+++++..|+..+..+. .. .+++...+
T Consensus 49 ~~Ty~eL~~~~~~lA~~L~--~~Gv~~gd~V~i~~~~~~~~~--~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l 124 (576)
T 3gqw_A 49 QLEYQTLKARAEAGAKRLL--SLNLKKGDRVALIAETSSEFV--EAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLL 124 (576)
T ss_dssp EEEHHHHHHHHHHHHHHHH--HTCCCTTCEEEEECCSSHHHH--HHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHH
T ss_pred EEcHHHHHHHHHHHHHHHH--HcCCCCCCEEEEEcCCcHHHH--HHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHH
Confidence 5788998888887776554 357889999999999765443 478889999999998864 33 57788899
Q ss_pred HHhCcceeccCcHHHHHHH
Q 037622 293 DKYGVTHFPVVPPILMALT 311 (560)
Q Consensus 293 ~~~~~t~l~~~P~~~~~l~ 311 (560)
++.++..++........+.
T Consensus 125 ~~~~~~~ii~~~~~~~~~~ 143 (576)
T 3gqw_A 125 ASCQPAAIITGDEWLPLVN 143 (576)
T ss_dssp HHHCCSEEEECGGGHHHHH
T ss_pred HhcCCCEEEecHHHHHHHH
Confidence 9999999998877665543
No 68
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=55.19 E-value=49 Score=33.89 Aligned_cols=103 Identities=9% Similarity=-0.038 Sum_probs=75.5
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
.|+.+|++....+ ..-.+|.+.+...+..++..+. ..++.++|++..+++-...+- ..+++++..|+..+.
T Consensus 24 ~p~~~a~~~~~~~-----~~~~~Ty~eL~~~~~~lA~~L~--~~gv~~gd~V~i~~~~~~~~~--~~~lA~~~~G~~~vp 94 (590)
T 3kxw_A 24 SPNKKSCTFLNKE-----LEETMTYEQLDQHAKAIAATLQ--AEGAKPGDRVLLLFAPGLPLI--QAFLGCLYAGCIAVP 94 (590)
T ss_dssp CTTSEEEEEEETT-----EEEEEEHHHHHHHHHHHHHHHH--HTTCCTTCEEEEECCSSHHHH--HHHHHHHHTTCEEEE
T ss_pred CCCCeEEEEEcCC-----eeEEEcHHHHHHHHHHHHHHHH--HcCCCCCCEEEEEcCCchhHH--HHHHHHHHhCcEEEE
Confidence 4567776654321 1235788988888877776554 357889999999998765433 478889999999998
Q ss_pred eCCc----CHHHHHHHHHHhCcceeccCcHHHHHHH
Q 037622 280 MRRF----EASEMLKVIDKYGVTHFPVVPPILMALT 311 (560)
Q Consensus 280 ~~~~----~~~~~~~~l~~~~~t~l~~~P~~~~~l~ 311 (560)
.++. ..+.+...++..++..++..+.....+.
T Consensus 95 l~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 95 IYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT 130 (590)
T ss_dssp ECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHC
T ss_pred ecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 8753 3467788899999999998888776653
No 69
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=51.94 E-value=34 Score=34.54 Aligned_cols=79 Identities=11% Similarity=0.023 Sum_probs=61.8
Q ss_pred hhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeC-CcCHHHHHHHHHHhCccee
Q 037622 222 LTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMR-RFEASEMLKVIDKYGVTHF 300 (560)
Q Consensus 222 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~l 300 (560)
+|...+...+..++..+. ..++.++|++...++-...+- ..+++++..|+..+..+ ....+++...+++.++..+
T Consensus 30 ~Ty~el~~~~~~lA~~L~--~~g~~~gd~V~i~~~n~~~~~--~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~i 105 (521)
T 3l8c_A 30 RTYGQLKRDSDSIAAFID--SLALLAKSPVLVFGAQTYDML--ATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLI 105 (521)
T ss_dssp EEHHHHHHHHHHHHHHHH--HTCCCTTCCEEEEECSSHHHH--HHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEE
T ss_pred ecHHHHHHHHHHHHHHHH--HcCCCCCCEEEEEeCCCHHHH--HHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEE
Confidence 788888888877776554 356788999988888654333 47888899999888776 4678899999999999988
Q ss_pred ccCc
Q 037622 301 PVVP 304 (560)
Q Consensus 301 ~~~P 304 (560)
+...
T Consensus 106 i~~~ 109 (521)
T 3l8c_A 106 IAIE 109 (521)
T ss_dssp EESS
T ss_pred EecC
Confidence 7654
No 70
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=50.79 E-value=40 Score=34.20 Aligned_cols=91 Identities=10% Similarity=0.015 Sum_probs=68.8
Q ss_pred CCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEe
Q 037622 201 QQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVM 280 (560)
Q Consensus 201 ~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 280 (560)
|+.+|++.. ...+|.+.+...+..++..+. ..++.++|++...++-...+- ..+++++..|+..+..
T Consensus 39 p~~~A~~~~---------~~~~Ty~eL~~~~~~lA~~L~--~~Gv~~gd~V~i~~~~~~~~~--~~~lA~~~~Ga~~vpl 105 (539)
T 1mdb_A 39 GDRIAITCG---------NTHWSYRELDTRADRLAAGFQ--KLGIQQKDRVVVQLPNIKEFF--EVIFALFRLGALPVFA 105 (539)
T ss_dssp TTSEEEEET---------TEEEEHHHHHHHHHHHHHHHH--HHTCCTTCEEEECCCSSHHHH--HHHHHHHHHTCEEEEC
T ss_pred CCCEEEEeC---------CCcccHHHHHHHHHHHHHHHH--HcCCCCCCEEEEEcCCcHHHH--HHHHHHHHcCeEEecC
Confidence 566666531 135789888888877776554 357889999999998765433 4788889999998877
Q ss_pred CC-cCHHHHHHHHHHhCcceeccCc
Q 037622 281 RR-FEASEMLKVIDKYGVTHFPVVP 304 (560)
Q Consensus 281 ~~-~~~~~~~~~l~~~~~t~l~~~P 304 (560)
.+ ...+++...+++.++..++..+
T Consensus 106 ~~~~~~~~l~~~l~~~~~~~vi~~~ 130 (539)
T 1mdb_A 106 LPSHRSSEITYFCEFAEAAAYIIPD 130 (539)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEES
T ss_pred CCCCCHHHHHHHHHhCCCCEEEecc
Confidence 64 6788899999999999988765
No 71
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=44.89 E-value=66 Score=33.28 Aligned_cols=91 Identities=14% Similarity=0.013 Sum_probs=68.8
Q ss_pred CCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEe
Q 037622 201 QQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVM 280 (560)
Q Consensus 201 ~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 280 (560)
++.+|++.. .-.+|.+.+...+..++..+. ..+.++++++..+++-...+- ..+++.+..|+..+..
T Consensus 39 pd~~Av~~~---------~~~lTY~eL~~~a~~lA~~L~--~~Gv~~gd~V~l~~~~s~~~v--va~lA~l~aG~~~vpl 105 (617)
T 3rg2_A 39 SDSIAVIDG---------ERQLSYRELNQAADNLACSLR--RQGIKPGETALVQLGNVAELY--ITFFALLKLGVAPVLA 105 (617)
T ss_dssp CCSEEEEET---------TEEEEHHHHHHHHHHHHHHHH--HTTCCTTCEEEEECCSSHHHH--HHHHHHHHHTCEEEEE
T ss_pred CCCeEEecC---------CceEeHHHHHHHHHHHHHHHH--HcCCCCCCEEEEECCCcHHHH--HHHHHHHhcCeEEccC
Confidence 567776531 124789998888887777554 357889999999998654433 4788899999998877
Q ss_pred CC-cCHHHHHHHHHHhCcceeccCc
Q 037622 281 RR-FEASEMLKVIDKYGVTHFPVVP 304 (560)
Q Consensus 281 ~~-~~~~~~~~~l~~~~~t~l~~~P 304 (560)
++ ...+++...+++.++..++...
T Consensus 106 ~~~~~~~~l~~~l~~~~~~~vl~~~ 130 (617)
T 3rg2_A 106 LFSHQRSELNAYASQIEPALLIADR 130 (617)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEEET
T ss_pred CccccHHHHHHHHhhcCceEEEecc
Confidence 64 6778888999999999887764
No 72
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=44.74 E-value=49 Score=33.25 Aligned_cols=79 Identities=11% Similarity=0.167 Sum_probs=60.8
Q ss_pred hhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeC-CcCHHHHHHHHHHhCcce
Q 037622 221 ELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMR-RFEASEMLKVIDKYGVTH 299 (560)
Q Consensus 221 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~ 299 (560)
.+|.+.+...+..++..+. ..+..++|++...++-...+ ...+++++..|+..+..+ ....+++...+++.++..
T Consensus 26 ~~Ty~el~~~~~~lA~~L~--~~g~~~gd~V~i~~~n~~e~--~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ 101 (512)
T 3fce_A 26 KITYKQLKEDSDALAHWIS--SEYPDDRSPIMVYGHMQPEM--IINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKL 101 (512)
T ss_dssp EEEHHHHHHHHHHHHHHHH--HHSTTCCCCEEEEESSCHHH--HHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCE
T ss_pred eEEHHHHHHHHHHHHHHHH--HhCCCCCCEEEEEeCCCHHH--HHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCE
Confidence 4788888888777776544 35678889888888765433 347888899999888776 467889999999999988
Q ss_pred eccC
Q 037622 300 FPVV 303 (560)
Q Consensus 300 l~~~ 303 (560)
++..
T Consensus 102 ~i~~ 105 (512)
T 3fce_A 102 LLSA 105 (512)
T ss_dssp EEES
T ss_pred EEec
Confidence 8754
No 73
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=43.92 E-value=75 Score=32.92 Aligned_cols=91 Identities=8% Similarity=-0.064 Sum_probs=68.2
Q ss_pred CCCCEEEEEcCCCCCCCchhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEE
Q 037622 200 RQQDTAAILYSSGTTGASKGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVV 279 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~ 279 (560)
.|+.+|++.. . -.+|.+.+...+..++..+. ..+..+++++..+++-...+- ..+++.+..|+..+.
T Consensus 40 ~Pd~~Av~~~-~--------~~lTY~eL~~~a~~lA~~L~--~~Gv~~g~~V~i~~~~s~~~v--va~lailkaGa~~vp 106 (620)
T 4dg8_A 40 HPHREAIRDR-F--------GSVDYRQLLDSAEQLSDYLL--EHYPQPGVCLGVYGEYSRESI--TCLLAILLSGHHYLY 106 (620)
T ss_dssp CTTSEEEEET-T--------EEEEHHHHHHHHHHHHHHHH--HHCCSSCCEEEEESSSCHHHH--HHHHHHHHTTCEEEE
T ss_pred CCCCeEEEcC-C--------CcCcHHHHHHHHHHHHHHHH--HcCCCCCCEEEEEeCCCHHHH--HHHHHHHHhCCEEEe
Confidence 4667776541 1 14788888888877776554 356789999999998665433 478889999999998
Q ss_pred eCC-cCHHHHHHHHHHhCcceeccC
Q 037622 280 MRR-FEASEMLKVIDKYGVTHFPVV 303 (560)
Q Consensus 280 ~~~-~~~~~~~~~l~~~~~t~l~~~ 303 (560)
.++ ...+++...+++.++..++..
T Consensus 107 ld~~~p~~~l~~il~~~~~~~vl~~ 131 (620)
T 4dg8_A 107 IDLKQPAAWNAELCRQVDCRLILDC 131 (620)
T ss_dssp CCTTSCHHHHHHHHHHHTEEEEEEC
T ss_pred eCccChHHHHHHHHHhCCCcEEEec
Confidence 875 567888889999999988744
No 74
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=42.52 E-value=89 Score=31.72 Aligned_cols=99 Identities=10% Similarity=0.020 Sum_probs=68.8
Q ss_pred CCCCEEEEEcCCCCCCCc--hhhhhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEE
Q 037622 200 RQQDTAAILYSSGTTGAS--KGAELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSV 277 (560)
Q Consensus 200 ~~~~~a~i~~TSGTTG~P--K~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~ 277 (560)
.|+.+|++...+ ..+.. ..-.+|.+.+...+..++..+. ..+. ++|++...++-...+- ..+++++..|+..
T Consensus 33 ~p~~~A~~~~~~-~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~--~~g~-~gd~V~i~~~n~~~~~--~~~lA~~~~Gav~ 106 (562)
T 3ite_A 33 HPEWKAVEVATG-FLGSQKIVTEDWTYKKLNETANQVANLII--HASL-HGRAIAVSLDRSLIAF--AIIVGIMKSGNTY 106 (562)
T ss_dssp CTTSEEEEEEEC-C-----CEEEEEEHHHHHHHHHHHHHHHH--HTTC-SSCEEEEECCSCHHHH--HHHHHHHHTTCEE
T ss_pred CCCchhhhcccc-cccccccccCCCCHHHHHHHHHHHHHHHH--hcCC-CCCEEEEEeCCCHHHH--HHHHHHHHhCCEE
Confidence 466777665322 22211 1235788888888877776543 2345 6899999998765443 4788899999999
Q ss_pred EEeCC-cCHHHHHHHHHHhCcceeccCc
Q 037622 278 VVMRR-FEASEMLKVIDKYGVTHFPVVP 304 (560)
Q Consensus 278 v~~~~-~~~~~~~~~l~~~~~t~l~~~P 304 (560)
+..++ ...+++...+++.++..++...
T Consensus 107 vpl~~~~~~~~l~~~l~~~~~~~~i~~~ 134 (562)
T 3ite_A 107 VPIEAGLPNDRKSFLLRDSRAAMAFVCD 134 (562)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECT
T ss_pred EecCCcCHHHHHHHHHHhcCCCEEEEcc
Confidence 98874 6788899999999999876653
No 75
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=40.28 E-value=64 Score=32.37 Aligned_cols=80 Identities=13% Similarity=0.056 Sum_probs=59.4
Q ss_pred hhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeC-CcCHHHHHHHHHHhCcce
Q 037622 221 ELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMR-RFEASEMLKVIDKYGVTH 299 (560)
Q Consensus 221 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~ 299 (560)
.+|.+.+...+..++..+... ....+++++....+-...+ ...+++++..|+..+..+ ....+++...+++.+++.
T Consensus 26 ~~Ty~eL~~~~~~~A~~L~~~-~~~~~g~~V~i~~~n~~~~--~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 102 (511)
T 3e7w_A 26 SLTYQELWEQSDRAAAAIQKR-ISGEKKSPILVYGHMEPHM--IVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAEL 102 (511)
T ss_dssp EEEHHHHHHHHHHHHHHHTTT-SCSSSCCCEEEEESSCHHH--HHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCE
T ss_pred eeeHHHHHHHHHHHHHHHHHh-cCCCCCCeEEEEecCCHHH--HHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCE
Confidence 589999988888877755321 3455678888777754332 347788889999888776 477899999999999999
Q ss_pred eccC
Q 037622 300 FPVV 303 (560)
Q Consensus 300 l~~~ 303 (560)
++..
T Consensus 103 li~~ 106 (511)
T 3e7w_A 103 LIHA 106 (511)
T ss_dssp EEES
T ss_pred EEec
Confidence 8763
No 76
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=39.67 E-value=93 Score=21.91 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=35.4
Q ss_pred hHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCHHHHHHHHHhccCCCC
Q 037622 469 PADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPYK 528 (560)
Q Consensus 469 ~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~ 528 (560)
..++++.|.+.|+|.+|..+..+.+ .++.+.. .+.+++.+.+.+.+....
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~~D-----~ll~v~~-----~d~~~l~~~i~~~l~~~~ 64 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGEYD-----LIVKVET-----DTLKDLDQFITEKIRKMP 64 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSSCS-----EEEEEEE-----SSHHHHHHHHHTTGGGCT
T ss_pred HHHHHHHHhCCCCeeEEEEEcccCC-----EEEEEEE-----CCHHHHHHHHHHHhccCC
Confidence 4789999999999999988765443 3444432 456788888877765543
No 77
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=35.27 E-value=99 Score=29.26 Aligned_cols=93 Identities=11% Similarity=0.122 Sum_probs=57.9
Q ss_pred CceEEE---ECCCC----ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCC-hHHHHHHHHHHhCCeEeccCCC
Q 037622 55 GRTALV---DSLSG----YSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSI-YFPVIFLALLYLGAIVIPMNPL 126 (560)
Q Consensus 55 ~~~a~~---~~~~~----~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~v~l~~~ 126 (560)
+.+|++ .+.+| -.+|++.+...+..++. . ++++++|++...+|-.- ..+..++..+..|+..+..++.
T Consensus 37 d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~---~-~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~ 112 (358)
T 4gs5_A 37 GAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGK---A-LSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT 112 (358)
T ss_dssp TCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHH---H-TTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC
T ss_pred CCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHH---H-hCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc
Confidence 455554 45555 36999998877665543 3 68899999998887653 3344556677788887777664
Q ss_pred CCHHHHHHHHHhcCCceEEEEeeccchHHh
Q 037622 127 LSVSEIKKQVTLCKTKISLAFTIYENVDKL 156 (560)
Q Consensus 127 ~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~ 156 (560)
... ...++..++ ..+...+..+..+
T Consensus 113 ~~~---~~~i~~~~~--t~~~~~P~~l~~l 137 (358)
T 4gs5_A 113 ANP---LAGLDHADF--DFVAMVPMQLQSI 137 (358)
T ss_dssp SCT---TTTCSSCCC--SEEEECHHHHHHH
T ss_pred ccH---HHHHHHhCC--eEEEcChHHHHHh
Confidence 432 233455555 5555544444433
No 78
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=31.64 E-value=1.4e+02 Score=27.96 Aligned_cols=91 Identities=11% Similarity=-0.028 Sum_probs=55.7
Q ss_pred ceEEEECCCCceecHHHHHHHHHHHHHHHHHhhC-CCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHH
Q 037622 56 RTALVDSLSGYSISYPQLFPLVQSVASGLRHHFG-ISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKK 134 (560)
Q Consensus 56 ~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g-~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~ 134 (560)
++.+-....+.+=++++--.. ..+.. ..+ .| +++|+.|.+....+=.-..+.++|.+.|..++.+-|...+.....
T Consensus 36 ~i~~K~E~~~ptGSfK~R~a~-~~i~~-a~~-~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~ 112 (334)
T 3tbh_A 36 KVVLKMECENPMASVKDRLGF-AIYDK-AEK-EGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRC 112 (334)
T ss_dssp EEEEEEGGGSTTSBTHHHHHH-HHHHH-HHH-TTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHH
T ss_pred EEEEEeCCCCCccCcHHHHHH-HHHHH-HHH-cCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHH
Confidence 555554322334466654221 22233 334 36 488888655555566667777888888988877666555555567
Q ss_pred HHHhcCCceEEEEeecc
Q 037622 135 QVTLCKTKISLAFTIYE 151 (560)
Q Consensus 135 ~l~~~~~~~~~v~~~~~ 151 (560)
.++..++ .+++++..
T Consensus 113 ~~~~~GA--~V~~~~~~ 127 (334)
T 3tbh_A 113 LLRIFGA--EVILTPAA 127 (334)
T ss_dssp HHHHTTC--EEEEECGG
T ss_pred HHHHCCC--EEEEECCC
Confidence 7889999 88877643
No 79
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=30.62 E-value=1.1e+02 Score=30.58 Aligned_cols=76 Identities=13% Similarity=0.075 Sum_probs=56.8
Q ss_pred hhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCC-cCHHHHHHHHHHhCcce
Q 037622 221 ELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRR-FEASEMLKVIDKYGVTH 299 (560)
Q Consensus 221 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t~ 299 (560)
.+|.+.+...+..++.. +..++++..+++-...+- ..+++++..|+..+..++ ...+++...+++.++..
T Consensus 48 ~~Ty~eL~~~~~~~A~~-------L~~~~~V~i~~~~~~~~~--~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~ 118 (505)
T 3nyq_A 48 SLTYAELAAAAGATAGR-------IGGAGRVAVWATPAMETG--VAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSL 118 (505)
T ss_dssp EEEHHHHHHHHHHHHTT-------CC---CEEEECCSSHHHH--HHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSE
T ss_pred eeeHHHHHHHHHHHHhh-------ccCCCEEEEEcCCCHHHH--HHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCE
Confidence 58899998888877752 335778888887654433 478888899999998874 67889999999999999
Q ss_pred eccCcH
Q 037622 300 FPVVPP 305 (560)
Q Consensus 300 l~~~P~ 305 (560)
++..+.
T Consensus 119 vi~~~~ 124 (505)
T 3nyq_A 119 VLAPPD 124 (505)
T ss_dssp EEECTT
T ss_pred EEECCc
Confidence 987654
No 80
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=29.31 E-value=2.3e+02 Score=24.16 Aligned_cols=88 Identities=20% Similarity=0.255 Sum_probs=53.2
Q ss_pred cEEEEecC-hhhHHhHHHHHHHHhhCCCEEEEeC-CcCHHHHHHHHHHhCcceeccCc------HHHHHHHHhhhccCCC
Q 037622 249 AVFLAVLP-MFHIYGLSLFALGLLSLGPSVVVMR-RFEASEMLKVIDKYGVTHFPVVP------PILMALTKAAKGLCGN 320 (560)
Q Consensus 249 ~~~~~~~p-~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~l~~~P------~~~~~l~~~~~~~~~~ 320 (560)
.+++.+.+ -.|..|........-..|..++... ...++.+.+.+++++++.+..+- ..+..+.+...+ .
T Consensus 90 ~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~---~ 166 (210)
T 1y80_A 90 KIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDALIA---A 166 (210)
T ss_dssp EEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHHHHH---T
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHh---c
Confidence 34444444 3677777544444457788888665 46789999999999998875442 223444332111 1
Q ss_pred CC-CccceeecccCCCCHHHH
Q 037622 321 SL-KSLKQVSSGAAPANSKII 340 (560)
Q Consensus 321 ~l-~~lr~~~~~g~~~~~~~~ 340 (560)
.+ +.+ .+++||...+++..
T Consensus 167 ~~~~~~-~v~vGG~~~~~~~~ 186 (210)
T 1y80_A 167 GLRDRV-KVIVGGAPLSQDFA 186 (210)
T ss_dssp TCGGGC-EEEEESTTCCHHHH
T ss_pred CCCCCC-eEEEECCCCCHHHH
Confidence 12 223 37788888887654
No 81
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=29.27 E-value=1.4e+02 Score=20.66 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=34.5
Q ss_pred hHHHHHHHhcCCCcccEEEEcccCCCCCceEEEEEEecCCCCCCHHHHHHHHHhccCCC
Q 037622 469 PADLETVLICHPEILDVAVTGAMDKVLGEIPVAFVVRRDGSTLTEAAVIDYLAQRVAPY 527 (560)
Q Consensus 469 ~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~ 527 (560)
..++++.|.++|+|.+|..+..+.+ .++.+. ..+.+++.+.+.+.+...
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~d-----~l~~v~-----~~d~~~l~~~~~~~l~~~ 63 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVYGVYD-----IVVKVE-----ADSMDKLKDFVTNTIRKL 63 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECSSSCS-----EEEEEE-----CSSHHHHHHHHHHTGGGS
T ss_pred HHHHHHHHhCCCCeEEEEEEeccCC-----EEEEEE-----ECCHHHHHHHHHHHhcCC
Confidence 4789999999999999988755443 344443 245678888887666554
No 82
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=28.13 E-value=1.7e+02 Score=33.56 Aligned_cols=82 Identities=9% Similarity=0.009 Sum_probs=64.5
Q ss_pred hhhhHHHHHHHHHHHHhhhcccccCCCCcEEEEecChhhHHhHHHHHHHHhhCCCEEEEeCC-cCHHHHHHHHHHhCcce
Q 037622 221 ELTHGNFIAAVELFVRFEASQYEYLSSEAVFLAVLPMFHIYGLSLFALGLLSLGPSVVVMRR-FEASEMLKVIDKYGVTH 299 (560)
Q Consensus 221 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t~ 299 (560)
.+|.+.+...+..++.... ..+.++++++..+++-...+- ..+++.+..|+..+..++ ...+++...+++.++..
T Consensus 489 ~lTY~eL~~~a~~lA~~L~--~~Gv~~g~~V~i~~~~s~~~v--v~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~ 564 (1304)
T 2vsq_A 489 TLSYRELDEEANRIARRLQ--KHGAGKGSVVALYTKRSLELV--IGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAAC 564 (1304)
T ss_dssp EEEHHHHHHHHHHHHHHHH--HTTCCTTCEEEECCCSSHHHH--HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCE
T ss_pred eEcHHHHHHHHHHHHHHHH--hcCcCCcCEEEEEeCCCHHHH--HHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCE
Confidence 4788888888777776554 357889999999998765433 478899999999998875 56788889999999998
Q ss_pred eccCcHH
Q 037622 300 FPVVPPI 306 (560)
Q Consensus 300 l~~~P~~ 306 (560)
++..+..
T Consensus 565 vl~~~~~ 571 (1304)
T 2vsq_A 565 LLTHQEM 571 (1304)
T ss_dssp EEECSTT
T ss_pred EEECcch
Confidence 8876543
No 83
>4hlb_A Uncharacterized protein; alpha-lytic protease prodomain-like fold, structural genomic center for structural genomics, JCSG; 1.80A {Desulfovibrio piger}
Probab=27.18 E-value=1.6e+02 Score=20.60 Aligned_cols=36 Identities=11% Similarity=0.254 Sum_probs=31.5
Q ss_pred CceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEc
Q 037622 65 GYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLL 100 (560)
Q Consensus 65 ~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~ 100 (560)
.+.+|-+|+...+.+--+.|.++.|+.+.-.|+-++
T Consensus 61 drkmtraefsaiasrsirelkerfgfdkdvpigavl 96 (115)
T 4hlb_A 61 DRKMTRAEFSAIASRSIRELKERFGFDKDVPIGAVL 96 (115)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEE
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhCCCcCCccceeE
Confidence 799999999999999999999989998887776554
No 84
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=25.40 E-value=1.2e+02 Score=21.17 Aligned_cols=45 Identities=11% Similarity=-0.045 Sum_probs=32.0
Q ss_pred ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCC
Q 037622 66 YSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGA 118 (560)
Q Consensus 66 ~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 118 (560)
..+.+.+|.+ .+.+ +++.+++.|.++|..+..+..+...+...|.
T Consensus 22 ~~ip~~~l~~-------~~~~-l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~ 66 (85)
T 2jtq_A 22 INIPLKEVKE-------RIAT-AVPDKNDTVKVYCNAGRQSGQAKEILSEMGY 66 (85)
T ss_dssp EECCHHHHHH-------HHHH-HCCCTTSEEEEEESSSHHHHHHHHHHHHTTC
T ss_pred EEcCHHHHHH-------HHHH-hCCCCCCcEEEEcCCCchHHHHHHHHHHcCC
Confidence 4566666543 3445 6777888999999888777777777777775
No 85
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=24.47 E-value=1.8e+02 Score=27.61 Aligned_cols=62 Identities=10% Similarity=0.065 Sum_probs=39.2
Q ss_pred HHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCC-----CCCHHHHHHHHHhcCCceEEEEe
Q 037622 83 GLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNP-----LLSVSEIKKQVTLCKTKISLAFT 148 (560)
Q Consensus 83 ~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~-----~~~~~~l~~~l~~~~~~~~~v~~ 148 (560)
.|.. +++++||.|.+..+.... ..-++...|+.++.++. ..+.+.++..+..-+.+.++++.
T Consensus 69 al~~-l~~~~Gd~Vi~~~~~~~~---~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~ 135 (377)
T 3ju7_A 69 AIQL-KKRKKGKYALMPSFTFPA---TPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVP 135 (377)
T ss_dssp HHHH-HSCTTCCEEEEESSSCTH---HHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECC
T ss_pred HHHH-cCCCCcCEEEECCCCcHH---HHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEE
Confidence 3555 678999999887665544 34456788988776653 24678888877333311266653
No 86
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=23.63 E-value=2.3e+02 Score=26.58 Aligned_cols=91 Identities=11% Similarity=-0.008 Sum_probs=59.8
Q ss_pred ceEEEECCCCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHH
Q 037622 56 RTALVDSLSGYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQ 135 (560)
Q Consensus 56 ~~a~~~~~~~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 135 (560)
++.+-...-+.+=||++=- ..+.+.....+ --+++|.+..+....+=.-..+.++|.+.|..++.+-|...+......
T Consensus 51 ~IylK~E~lnptGSfK~Rg-A~~~i~~a~~~-g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~ 128 (344)
T 3vc3_A 51 YVAVKQEMMQPTASIADRP-AYAMITDAEEK-NLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVT 128 (344)
T ss_dssp EEEEEEGGGSTTSBTTHHH-HHHHHHHHHHT-TCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHH
T ss_pred EEEEEecCCCCCCCcHHHH-HHHHHHHHHHc-CCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHH
Confidence 5555543223444665422 22334443433 236778766667777777788889999999988887776666667788
Q ss_pred HHhcCCceEEEEeec
Q 037622 136 VTLCKTKISLAFTIY 150 (560)
Q Consensus 136 l~~~~~~~~~v~~~~ 150 (560)
++..++ .+++++.
T Consensus 129 ~~~~GA--~Vv~v~~ 141 (344)
T 3vc3_A 129 MRAFGA--ELILTDP 141 (344)
T ss_dssp HHHTTC--EEEEECG
T ss_pred HHHcCC--EEEEECC
Confidence 999999 8887754
No 87
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=23.26 E-value=60 Score=29.41 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=20.6
Q ss_pred HHHHHHHHHhhCCCCCCEEEEEcCCC
Q 037622 78 QSVASGLRHHFGISQGDAVLLLLPNS 103 (560)
Q Consensus 78 ~~la~~L~~~~g~~~gd~V~i~~~~~ 103 (560)
..+...|.+ +||++||.|.+++.-+
T Consensus 18 ~~l~~~L~~-LGi~~Gd~llVHsSl~ 42 (268)
T 3ijw_A 18 KTITNDLRK-LGLKKGMTVIVHSSLS 42 (268)
T ss_dssp HHHHHHHHH-HTCCTTCEEEEEECTG
T ss_pred HHHHHHHHH-cCCCCCCEEEEEechH
Confidence 456677888 9999999999998754
No 88
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=22.00 E-value=3.4e+02 Score=24.13 Aligned_cols=17 Identities=35% Similarity=0.358 Sum_probs=12.0
Q ss_pred EEEEcCCCCCCCchhhh
Q 037622 205 AAILYSSGTTGASKGAE 221 (560)
Q Consensus 205 a~i~~TSGTTG~PK~v~ 221 (560)
.|++...|+||..+...
T Consensus 168 iY~Vs~~GvTG~~~~~~ 184 (252)
T 3tha_A 168 IYLLASIGITGTKSVEE 184 (252)
T ss_dssp EEEECCSCSSSCSHHHH
T ss_pred EEEEecCCCCCcccCCC
Confidence 46666679999876553
No 89
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=21.67 E-value=66 Score=29.24 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=19.6
Q ss_pred HHHHHHHHhhCCCCCCEEEEEcCCC
Q 037622 79 SVASGLRHHFGISQGDAVLLLLPNS 103 (560)
Q Consensus 79 ~la~~L~~~~g~~~gd~V~i~~~~~ 103 (560)
.+...|.+ +||++||.|.+++.-+
T Consensus 17 ~L~~~L~~-LGI~~Gd~llVHsSl~ 40 (273)
T 2nyg_A 17 SITEDLKA-LGLKKGMTVLVHSSLS 40 (273)
T ss_dssp HHHHHHHH-HTCCTTCEEEEEECSG
T ss_pred HHHHHHHH-cCCCCCCEEEEEechH
Confidence 35667888 9999999999998654
No 90
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=21.59 E-value=68 Score=29.33 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=24.3
Q ss_pred CceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEcCCC
Q 037622 65 GYSISYPQLFPLVQSVASGLRHHFGISQGDAVLLLLPNS 103 (560)
Q Consensus 65 ~~~~Ty~el~~~v~~la~~L~~~~g~~~gd~V~i~~~~~ 103 (560)
+..+|-.+|. ..|.+ +||++||.|.+++.-+
T Consensus 19 ~~~~T~~~L~-------~~L~~-LGI~~Gd~llVHsSL~ 49 (286)
T 3sma_A 19 RELVTRDRLA-------SDLAA-LGVRPGGVLLVHASLS 49 (286)
T ss_dssp CCEECHHHHH-------HHHHH-HTCCTTCEEEEEECST
T ss_pred CCCcCHHHHH-------HHHHH-cCCCCCCEEEEEechH
Confidence 5667766654 56788 9999999999998755
No 91
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=20.61 E-value=92 Score=19.91 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=15.4
Q ss_pred HHHhhCCCCCCEEEEEcCCC
Q 037622 84 LRHHFGISQGDAVLLLLPNS 103 (560)
Q Consensus 84 L~~~~g~~~gd~V~i~~~~~ 103 (560)
+++++|+++||.|.+...++
T Consensus 20 ir~~lgi~~Gd~v~i~~~~~ 39 (53)
T 2l66_A 20 VRQKFQIKEGDLVKVTFDES 39 (53)
T ss_dssp HHHHSCCCTTCEEEEEECSS
T ss_pred HHHHcCcCCCCEEEEEEECC
Confidence 44558999999998877554
No 92
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=20.48 E-value=1.8e+02 Score=27.06 Aligned_cols=71 Identities=13% Similarity=0.091 Sum_probs=44.5
Q ss_pred eecHHHHHHHHHHH--H-HHHHHhhCCCCCCEEEEEcCCCChHHHHHHHHHHhCCeEeccCCCCCHHHHHHHHHhcCC
Q 037622 67 SISYPQLFPLVQSV--A-SGLRHHFGISQGDAVLLLLPNSIYFPVIFLALLYLGAIVIPMNPLLSVSEIKKQVTLCKT 141 (560)
Q Consensus 67 ~~Ty~el~~~v~~l--a-~~L~~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~ 141 (560)
.+++.+........ | ..+.. .++++|++|+|...-+.-..++.+|....|+.++.++. +.++ ..++...++
T Consensus 136 ~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~--~~~r-~~~~~~~Ga 209 (348)
T 4eez_A 136 GLDPIEASSITCAGVTTYKAIKV-SGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDI--NQDK-LNLAKKIGA 209 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHH-HTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEES--CHHH-HHHHHHTTC
T ss_pred CCCHHHHhhcccceeeEEeeecc-cCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEEC--cHHH-hhhhhhcCC
Confidence 46776654433322 2 23444 69999999999987666666666666666777766653 3443 345566777
Done!