BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037625
(467 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 25/148 (16%)
Query: 226 EKALDIFRSL---REKRIVLLLDDIWERVDLTKVGVPLSGPKNTTSKVVFTTRFIGVCGS 282
E+A D R L + R +L+LDD+W+ L ++ +++ TTR V S
Sbjct: 221 EEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF--------DSQCQILLTTRDKSVTDS 272
Query: 283 MEADRKFLVACLSEKDAWELFREKVGEETLK-----SDHDIAELAQIVANECGGLPLALI 337
+ K++V S L +EK G E L D+ E A + EC G PL +
Sbjct: 273 VMGP-KYVVPVESS-----LGKEK-GLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVS 325
Query: 338 TIGRAMAYRKKAEQWRRAIEELRRSASK 365
IG + R +W +++L+ K
Sbjct: 326 LIGALL--RDFPNRWEYYLKQLQNKQFK 351
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 25/148 (16%)
Query: 226 EKALDIFRSL---REKRIVLLLDDIWERVDLTKVGVPLSGPKNTTSKVVFTTRFIGVCGS 282
E+A D R L + R +L+LDD+W+ L ++ +++ TTR V S
Sbjct: 227 EEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF--------DSQCQILLTTRDKSVTDS 278
Query: 283 MEADRKFLVACLSEKDAWELFREKVGEETLK-----SDHDIAELAQIVANECGGLPLALI 337
+ K++V S L +EK G E L D+ E A + EC G PL +
Sbjct: 279 VMGP-KYVVPVESS-----LGKEK-GLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVS 331
Query: 338 TIGRAMAYRKKAEQWRRAIEELRRSASK 365
IG + R +W +++L+ K
Sbjct: 332 LIGALL--RDFPNRWEYYLKQLQNKQFK 357
>pdb|1JLW|A Chain A, Anopheles Dirus Species B Glutathione S-Transferases 1-4
pdb|1JLW|B Chain B, Anopheles Dirus Species B Glutathione S-Transferases 1-4
pdb|3F63|A Chain A, Crystal Structure Of A Delta Class Gst (Adgstd4-4) From
Anopheles Dirus, In Complex With S-Hexyl Glutathione
pdb|3F63|B Chain B, Crystal Structure Of A Delta Class Gst (Adgstd4-4) From
Anopheles Dirus, In Complex With S-Hexyl Glutathione
pdb|3G7I|A Chain A, Crystal Structure Of A Delta Class Gst (Adgstd4-4) From
Anopheles Dirus, With Glutathione Complexed In One
Subunit
pdb|3G7I|B Chain B, Crystal Structure Of A Delta Class Gst (Adgstd4-4) From
Anopheles Dirus, With Glutathione Complexed In One
Subunit
Length = 219
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 64 MRRLDRVQRWVSRVDAVKTGADE 86
+RR + VQRW R A+ GAD+
Sbjct: 182 LRRYENVQRWYERTSAIVPGADK 204
>pdb|3F6D|A Chain A, Crystal Structure Of A Genetically Modified Delta Class
Gst (Adgstd4- 4) From Anopheles Dirus, F123a, In Complex
With S-Hexyl Glutathione
pdb|3F6D|B Chain B, Crystal Structure Of A Genetically Modified Delta Class
Gst (Adgstd4- 4) From Anopheles Dirus, F123a, In Complex
With S-Hexyl Glutathione
Length = 219
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 64 MRRLDRVQRWVSRVDAVKTGADE 86
+RR + VQRW R A+ GAD+
Sbjct: 182 LRRYENVQRWYERTSAIVPGADK 204
>pdb|3G7J|A Chain A, Crystal Structure Of A Genetically Modified Delta Class
Gst (adgstd4- 4) From Anopheles Dirus, Y119e, In Complex
With S-hexyl Glutathione
pdb|3G7J|B Chain B, Crystal Structure Of A Genetically Modified Delta Class
Gst (adgstd4- 4) From Anopheles Dirus, Y119e, In Complex
With S-hexyl Glutathione
Length = 219
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 64 MRRLDRVQRWVSRVDAVKTGADE 86
+RR + VQRW R A+ GAD+
Sbjct: 182 LRRYENVQRWYERTSAIVPGADK 204
>pdb|2I7Q|A Chain A, Crystal Structure Of Human Choline Kinase A
Length = 402
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 118 VVPKRAPEPVADERPTERT----VVGLQSQLEQVWRCLAEE 154
+VP+ +P+P ADE+P RT + + L WR L E+
Sbjct: 14 LVPRGSPQPPADEQPEPRTRRRAYLWCKEFLPGAWRGLRED 54
>pdb|3F2R|A Chain A, Crystal Structure Of Human Choline Kinase Alpha In Complex
With Hemicholinium-3
pdb|3F2R|B Chain B, Crystal Structure Of Human Choline Kinase Alpha In Complex
With Hemicholinium-3
pdb|3G15|A Chain A, Crystal Structure Of Human Choline Kinase Alpha In Complex
With Hemicholinium-3 And Adp
pdb|3G15|B Chain B, Crystal Structure Of Human Choline Kinase Alpha In Complex
With Hemicholinium-3 And Adp
Length = 401
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 118 VVPKRAPEPVADERPTERT----VVGLQSQLEQVWRCLAEE 154
+VP+ +P+P ADE+P RT + + L WR L E+
Sbjct: 13 LVPRGSPQPPADEQPEPRTRRRAYLWCKEFLPGAWRGLRED 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,504,803
Number of Sequences: 62578
Number of extensions: 544732
Number of successful extensions: 1278
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1271
Number of HSP's gapped (non-prelim): 11
length of query: 467
length of database: 14,973,337
effective HSP length: 102
effective length of query: 365
effective length of database: 8,590,381
effective search space: 3135489065
effective search space used: 3135489065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)