Query 037625
Match_columns 467
No_of_seqs 299 out of 2664
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 02:50:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037625.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037625hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.9E-67 4.1E-72 549.4 37.9 444 14-467 9-495 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 3.5E-47 7.5E-52 359.7 16.6 281 140-423 1-285 (287)
3 PLN03210 Resistant to P. syrin 100.0 5.2E-41 1.1E-45 368.8 30.5 303 134-467 183-502 (1153)
4 PRK04841 transcriptional regul 99.7 3.3E-16 7.3E-21 171.4 24.4 294 131-465 10-330 (903)
5 COG2909 MalT ATP-dependent tra 99.7 5.3E-15 1.2E-19 148.8 20.2 292 133-464 17-335 (894)
6 PRK00411 cdc6 cell division co 99.6 5.2E-13 1.1E-17 132.0 26.9 298 133-448 28-358 (394)
7 TIGR02928 orc1/cdc6 family rep 99.5 7.4E-12 1.6E-16 122.5 28.6 297 134-448 14-350 (365)
8 PF01637 Arch_ATPase: Archaeal 99.5 6.5E-14 1.4E-18 128.0 9.4 196 137-338 1-233 (234)
9 TIGR03015 pepcterm_ATPase puta 99.5 2.4E-11 5.3E-16 113.6 24.2 182 154-343 41-242 (269)
10 TIGR00635 ruvB Holliday juncti 99.4 2.2E-12 4.8E-17 122.9 15.1 265 135-448 4-289 (305)
11 PRK00080 ruvB Holliday junctio 99.4 3E-12 6.5E-17 122.8 15.1 274 134-448 24-310 (328)
12 COG3899 Predicted ATPase [Gene 99.4 2.3E-11 5.1E-16 129.2 18.2 306 137-464 2-383 (849)
13 COG2256 MGS1 ATPase related to 99.3 1.6E-10 3.4E-15 107.8 15.9 169 135-334 24-207 (436)
14 PF05729 NACHT: NACHT domain 99.3 4.4E-11 9.6E-16 103.0 11.0 143 157-308 1-164 (166)
15 PTZ00112 origin recognition co 99.2 7.1E-09 1.5E-13 106.2 23.1 297 134-448 754-1086(1164)
16 PRK06893 DNA replication initi 99.2 4.2E-10 9.1E-15 102.0 12.5 153 155-340 38-204 (229)
17 PRK13342 recombination factor 99.1 3.9E-09 8.4E-14 104.4 18.8 177 135-342 12-199 (413)
18 PRK07003 DNA polymerase III su 99.1 4.6E-09 1E-13 106.9 19.1 197 135-343 16-225 (830)
19 TIGR03420 DnaA_homol_Hda DnaA 99.1 1E-09 2.2E-14 99.8 12.8 174 135-341 15-203 (226)
20 PRK04195 replication factor C 99.1 1.5E-08 3.2E-13 102.3 19.6 242 135-422 14-271 (482)
21 KOG2028 ATPase related to the 99.0 1.9E-08 4.1E-13 92.5 17.9 173 135-333 138-330 (554)
22 PRK12323 DNA polymerase III su 99.0 4.3E-08 9.3E-13 98.7 21.8 194 135-337 16-223 (700)
23 PRK14960 DNA polymerase III su 99.0 2.2E-08 4.7E-13 101.0 18.6 190 135-337 15-217 (702)
24 COG1474 CDC6 Cdc6-related prot 99.0 4.3E-07 9.3E-12 87.4 26.7 291 134-448 16-334 (366)
25 PRK14949 DNA polymerase III su 99.0 2.4E-08 5.2E-13 103.8 19.0 192 135-339 16-220 (944)
26 PRK12402 replication factor C 99.0 1.2E-08 2.7E-13 98.7 16.2 198 135-340 15-227 (337)
27 PRK08727 hypothetical protein; 99.0 1.4E-08 3E-13 92.3 13.8 169 135-336 19-201 (233)
28 PRK14961 DNA polymerase III su 98.9 5.5E-08 1.2E-12 94.5 17.7 190 135-337 16-218 (363)
29 PRK08084 DNA replication initi 98.9 1.9E-08 4.2E-13 91.5 13.4 169 138-339 26-209 (235)
30 PRK00440 rfc replication facto 98.9 5.6E-08 1.2E-12 93.3 17.3 180 135-338 17-202 (319)
31 PLN03025 replication factor C 98.9 3.5E-08 7.6E-13 94.3 15.4 181 135-337 13-198 (319)
32 PF14516 AAA_35: AAA-like doma 98.9 1.5E-06 3.2E-11 83.3 25.7 204 132-346 8-246 (331)
33 PRK14958 DNA polymerase III su 98.9 1.5E-07 3.2E-12 94.8 19.6 180 135-338 16-219 (509)
34 PRK14963 DNA polymerase III su 98.9 7E-08 1.5E-12 96.9 16.9 198 135-343 14-222 (504)
35 PRK05564 DNA polymerase III su 98.9 2E-07 4.4E-12 88.9 18.3 177 135-338 4-189 (313)
36 PF13173 AAA_14: AAA domain 98.8 6.5E-09 1.4E-13 85.2 6.5 120 156-299 2-127 (128)
37 PRK07471 DNA polymerase III su 98.8 2.3E-07 5E-12 89.4 18.2 195 134-339 18-238 (365)
38 cd00009 AAA The AAA+ (ATPases 98.8 4.2E-08 9.1E-13 82.3 11.7 124 138-278 1-131 (151)
39 PRK14951 DNA polymerase III su 98.8 3.1E-07 6.6E-12 93.8 19.8 194 135-338 16-224 (618)
40 PRK14956 DNA polymerase III su 98.8 4E-08 8.6E-13 96.4 12.9 192 135-334 18-217 (484)
41 PRK14962 DNA polymerase III su 98.8 6.2E-07 1.3E-11 89.4 21.4 186 135-343 14-223 (472)
42 PF05496 RuvB_N: Holliday junc 98.8 4.9E-08 1.1E-12 85.4 11.8 176 134-343 23-225 (233)
43 PRK13341 recombination factor 98.8 4.2E-07 9.1E-12 94.9 20.4 168 135-336 28-214 (725)
44 PRK14957 DNA polymerase III su 98.8 1.4E-07 3.1E-12 94.9 16.4 182 135-340 16-222 (546)
45 PRK08691 DNA polymerase III su 98.8 3.4E-07 7.4E-12 93.3 19.1 189 135-338 16-219 (709)
46 PRK09112 DNA polymerase III su 98.8 9.3E-08 2E-12 91.7 14.3 198 133-339 21-240 (351)
47 PRK07940 DNA polymerase III su 98.8 2E-07 4.4E-12 90.6 16.5 184 135-337 5-211 (394)
48 PF13401 AAA_22: AAA domain; P 98.8 1.1E-08 2.4E-13 84.3 6.8 116 156-276 4-125 (131)
49 PRK06645 DNA polymerase III su 98.8 2.5E-07 5.4E-12 92.6 17.5 193 135-336 21-226 (507)
50 PRK09087 hypothetical protein; 98.8 7.6E-08 1.7E-12 86.7 12.5 143 155-339 43-195 (226)
51 PRK07994 DNA polymerase III su 98.8 1E-07 2.2E-12 97.5 14.7 192 135-339 16-220 (647)
52 PRK14959 DNA polymerase III su 98.8 4.5E-07 9.7E-12 92.0 19.1 196 135-343 16-225 (624)
53 PRK14969 DNA polymerase III su 98.8 4E-07 8.7E-12 92.3 18.5 180 135-343 16-225 (527)
54 PRK05896 DNA polymerase III su 98.8 2E-07 4.3E-12 94.0 15.7 194 135-341 16-223 (605)
55 PRK08903 DnaA regulatory inact 98.8 7.5E-08 1.6E-12 87.5 11.5 172 135-343 18-203 (227)
56 PRK05642 DNA replication initi 98.8 1.6E-07 3.6E-12 85.3 13.6 151 156-339 45-208 (234)
57 COG3903 Predicted ATPase [Gene 98.8 3E-08 6.4E-13 93.4 8.6 273 155-448 13-292 (414)
58 PTZ00202 tuzin; Provisional 98.7 5.8E-07 1.3E-11 85.9 17.0 164 129-307 256-434 (550)
59 PRK14955 DNA polymerase III su 98.7 1.9E-07 4.1E-12 91.8 14.4 198 135-338 16-227 (397)
60 PRK14964 DNA polymerase III su 98.7 4.3E-07 9.3E-12 90.2 16.9 179 135-336 13-214 (491)
61 TIGR02397 dnaX_nterm DNA polym 98.7 7E-07 1.5E-11 87.1 18.2 182 135-340 14-219 (355)
62 TIGR00678 holB DNA polymerase 98.7 6.6E-07 1.4E-11 78.7 15.8 159 146-334 3-186 (188)
63 PF13191 AAA_16: AAA ATPase do 98.7 3E-08 6.6E-13 87.0 6.6 45 136-180 1-48 (185)
64 TIGR02903 spore_lon_C ATP-depe 98.7 3.7E-06 7.9E-11 87.0 22.7 203 134-342 153-398 (615)
65 PRK14952 DNA polymerase III su 98.7 6.3E-07 1.4E-11 91.2 16.6 196 135-343 13-224 (584)
66 PRK07764 DNA polymerase III su 98.7 5.7E-07 1.2E-11 95.1 16.4 195 135-342 15-225 (824)
67 COG2255 RuvB Holliday junction 98.7 1.4E-06 3.1E-11 78.0 16.1 173 134-340 25-224 (332)
68 PF00308 Bac_DnaA: Bacterial d 98.7 1.8E-07 4E-12 83.9 10.8 162 156-339 34-208 (219)
69 PRK09111 DNA polymerase III su 98.7 7.8E-07 1.7E-11 91.0 16.5 196 135-340 24-234 (598)
70 PRK14087 dnaA chromosomal repl 98.7 2.3E-07 5E-12 92.3 12.1 169 156-342 141-322 (450)
71 PRK14970 DNA polymerase III su 98.6 1.3E-06 2.9E-11 85.3 17.2 179 135-336 17-206 (367)
72 PRK14953 DNA polymerase III su 98.6 2E-06 4.4E-11 86.1 17.5 178 135-340 16-221 (486)
73 PRK14965 DNA polymerase III su 98.6 3.4E-06 7.4E-11 86.7 19.0 196 135-343 16-225 (576)
74 cd01128 rho_factor Transcripti 98.6 2.1E-07 4.5E-12 84.7 9.1 93 155-249 15-114 (249)
75 TIGR01242 26Sp45 26S proteasom 98.6 2.4E-07 5.2E-12 90.3 9.9 171 135-333 122-328 (364)
76 PRK14954 DNA polymerase III su 98.6 2.6E-06 5.6E-11 87.4 17.7 199 135-339 16-229 (620)
77 PRK08451 DNA polymerase III su 98.6 3.8E-06 8.2E-11 84.3 17.6 193 135-339 14-218 (535)
78 PRK14950 DNA polymerase III su 98.5 3.7E-06 8.1E-11 86.8 17.7 193 135-339 16-221 (585)
79 PRK07133 DNA polymerase III su 98.5 2.8E-06 6.1E-11 87.6 16.4 188 135-340 18-221 (725)
80 PRK14971 DNA polymerase III su 98.5 4.2E-06 9.1E-11 86.3 17.5 178 135-336 17-219 (614)
81 PRK03992 proteasome-activating 98.5 1.6E-06 3.4E-11 85.0 13.8 171 135-333 131-337 (389)
82 PRK06647 DNA polymerase III su 98.5 1.2E-05 2.6E-10 82.1 19.9 191 135-338 16-219 (563)
83 KOG0989 Replication factor C, 98.5 1.2E-06 2.7E-11 79.2 11.1 183 133-333 34-224 (346)
84 PF05621 TniB: Bacterial TniB 98.5 8.5E-06 1.8E-10 74.9 16.5 201 135-340 34-262 (302)
85 PRK06305 DNA polymerase III su 98.5 6.2E-06 1.3E-10 82.2 17.0 180 135-339 17-223 (451)
86 TIGR02881 spore_V_K stage V sp 98.5 2.8E-06 6.1E-11 78.8 13.7 155 136-310 7-194 (261)
87 PRK05563 DNA polymerase III su 98.5 8.4E-06 1.8E-10 83.4 18.0 189 135-336 16-217 (559)
88 PRK09376 rho transcription ter 98.5 4.7E-07 1E-11 86.0 7.7 91 155-249 168-267 (416)
89 PRK00149 dnaA chromosomal repl 98.5 1.7E-06 3.7E-11 86.8 12.2 182 156-359 148-349 (450)
90 PRK14948 DNA polymerase III su 98.4 9.7E-06 2.1E-10 83.6 17.7 194 135-339 16-222 (620)
91 PRK14088 dnaA chromosomal repl 98.4 1.5E-06 3.2E-11 86.5 11.2 183 156-359 130-332 (440)
92 PRK14086 dnaA chromosomal repl 98.4 6.9E-06 1.5E-10 83.1 15.7 159 157-337 315-486 (617)
93 TIGR00362 DnaA chromosomal rep 98.4 3E-06 6.4E-11 84.0 13.0 160 156-337 136-308 (405)
94 PRK06620 hypothetical protein; 98.4 3.2E-06 7E-11 75.5 11.9 135 157-336 45-186 (214)
95 PRK07399 DNA polymerase III su 98.4 4.9E-05 1.1E-09 72.0 20.5 196 135-339 4-221 (314)
96 TIGR02880 cbbX_cfxQ probable R 98.4 5.4E-06 1.2E-10 77.6 13.8 155 136-310 23-211 (284)
97 TIGR03345 VI_ClpV1 type VI sec 98.4 2.8E-06 6.1E-11 90.9 13.0 179 135-332 187-389 (852)
98 PTZ00454 26S protease regulato 98.4 4.1E-06 8.8E-11 81.8 12.6 171 135-333 145-351 (398)
99 TIGR03689 pup_AAA proteasome A 98.4 8.2E-06 1.8E-10 81.5 14.6 159 135-309 182-380 (512)
100 PRK12422 chromosomal replicati 98.4 9.9E-06 2.1E-10 80.4 15.0 154 156-333 141-307 (445)
101 TIGR00767 rho transcription te 98.4 2E-06 4.4E-11 82.2 9.7 93 155-249 167-266 (415)
102 PHA02544 44 clamp loader, smal 98.4 1.2E-05 2.6E-10 76.9 15.3 146 134-305 20-171 (316)
103 COG3267 ExeA Type II secretory 98.4 3.8E-05 8.2E-10 68.2 16.6 184 153-342 48-248 (269)
104 PF05673 DUF815: Protein of un 98.3 2.9E-05 6.3E-10 69.2 15.9 47 134-180 26-76 (249)
105 KOG2227 Pre-initiation complex 98.3 5.2E-05 1.1E-09 72.8 18.4 173 134-311 149-342 (529)
106 TIGR02639 ClpA ATP-dependent C 98.3 8.1E-06 1.8E-10 86.7 14.3 155 135-307 182-358 (731)
107 CHL00181 cbbX CbbX; Provisiona 98.3 2.3E-05 5E-10 73.3 15.8 156 136-311 24-213 (287)
108 PTZ00361 26 proteosome regulat 98.3 2.9E-06 6.2E-11 83.5 9.7 171 135-333 183-389 (438)
109 PRK05707 DNA polymerase III su 98.3 4.2E-05 9.1E-10 72.9 16.9 95 237-339 105-203 (328)
110 KOG0991 Replication factor C, 98.2 1.6E-05 3.4E-10 69.2 11.4 66 135-201 27-92 (333)
111 COG1222 RPT1 ATP-dependent 26S 98.2 1.1E-05 2.4E-10 74.7 10.8 193 137-359 153-392 (406)
112 COG0593 DnaA ATPase involved i 98.2 1.9E-05 4E-10 76.2 12.6 152 155-331 112-278 (408)
113 KOG2543 Origin recognition com 98.2 3.9E-05 8.5E-10 71.7 14.1 200 134-342 5-229 (438)
114 PF10443 RNA12: RNA12 protein; 98.2 0.00027 5.8E-09 68.1 20.2 275 140-448 1-369 (431)
115 TIGR00763 lon ATP-dependent pr 98.2 0.00011 2.4E-09 78.6 19.7 158 135-307 320-505 (775)
116 CHL00095 clpC Clp protease ATP 98.2 1.1E-05 2.5E-10 86.7 11.4 155 135-306 179-353 (821)
117 PRK08769 DNA polymerase III su 98.2 0.00014 3E-09 68.7 17.0 176 142-339 11-208 (319)
118 TIGR01241 FtsH_fam ATP-depende 98.1 3.8E-05 8.3E-10 78.0 14.0 198 135-359 55-295 (495)
119 KOG0733 Nuclear AAA ATPase (VC 98.1 4.8E-05 1E-09 75.2 13.7 171 135-332 190-395 (802)
120 PRK10787 DNA-binding ATP-depen 98.1 8.1E-05 1.8E-09 79.0 16.6 159 135-308 322-507 (784)
121 PRK10865 protein disaggregatio 98.1 2.5E-05 5.5E-10 84.0 12.9 154 135-307 178-354 (857)
122 TIGR03346 chaperone_ClpB ATP-d 98.1 2.2E-05 4.7E-10 84.8 12.4 154 135-307 173-349 (852)
123 COG0466 Lon ATP-dependent Lon 98.1 0.00032 7E-09 71.0 19.1 157 136-307 324-508 (782)
124 PF00004 AAA: ATPase family as 98.1 1.6E-05 3.4E-10 65.4 8.1 22 159-180 1-22 (132)
125 PRK11331 5-methylcytosine-spec 98.1 1.9E-05 4.1E-10 76.9 9.5 69 135-206 175-243 (459)
126 PRK11034 clpA ATP-dependent Cl 98.1 2.5E-05 5.4E-10 82.3 11.0 156 135-307 186-362 (758)
127 smart00382 AAA ATPases associa 98.1 2E-05 4.4E-10 65.3 8.4 88 156-250 2-90 (148)
128 COG1373 Predicted ATPase (AAA+ 98.1 6.5E-05 1.4E-09 73.7 13.1 135 140-302 22-162 (398)
129 PRK08058 DNA polymerase III su 98.0 0.00021 4.5E-09 68.5 16.0 161 136-306 6-181 (329)
130 PRK08116 hypothetical protein; 98.0 9.9E-06 2.1E-10 75.0 6.7 103 157-277 115-221 (268)
131 PRK06871 DNA polymerase III su 98.0 0.00034 7.3E-09 66.3 16.9 177 142-336 9-200 (325)
132 TIGR00602 rad24 checkpoint pro 98.0 4E-05 8.6E-10 78.7 10.9 47 134-180 83-134 (637)
133 CHL00176 ftsH cell division pr 98.0 0.0001 2.2E-09 76.2 13.7 170 135-331 183-386 (638)
134 CHL00195 ycf46 Ycf46; Provisio 98.0 7.8E-05 1.7E-09 74.6 12.2 173 135-334 228-430 (489)
135 PRK07993 DNA polymerase III su 98.0 0.00049 1.1E-08 65.8 16.7 177 142-336 9-201 (334)
136 PRK06090 DNA polymerase III su 97.9 0.00069 1.5E-08 64.0 17.1 176 142-339 10-201 (319)
137 TIGR02640 gas_vesic_GvpN gas v 97.9 0.00036 7.8E-09 64.7 14.8 55 143-205 10-64 (262)
138 PRK08181 transposase; Validate 97.9 0.00024 5.1E-09 65.6 13.2 105 149-277 101-209 (269)
139 PF13177 DNA_pol3_delta2: DNA 97.9 0.00018 3.8E-09 61.4 11.1 135 139-295 1-162 (162)
140 PRK12377 putative replication 97.9 6.1E-05 1.3E-09 68.5 8.7 73 156-248 101-173 (248)
141 COG2812 DnaX DNA polymerase II 97.9 0.00015 3.3E-09 72.1 12.1 187 135-333 16-214 (515)
142 KOG2004 Mitochondrial ATP-depe 97.9 0.0012 2.7E-08 66.7 17.9 158 135-307 411-596 (906)
143 PRK12608 transcription termina 97.8 0.00012 2.6E-09 69.8 10.2 102 145-248 121-230 (380)
144 TIGR01243 CDC48 AAA family ATP 97.8 0.00017 3.7E-09 77.0 12.0 172 135-333 178-381 (733)
145 PF04665 Pox_A32: Poxvirus A32 97.8 8.1E-05 1.8E-09 66.8 7.6 35 158-195 15-49 (241)
146 KOG1514 Origin recognition com 97.8 0.0013 2.8E-08 66.6 16.5 203 134-342 395-624 (767)
147 KOG0652 26S proteasome regulat 97.8 0.0028 6E-08 56.4 16.7 165 136-324 172-372 (424)
148 PRK08118 topology modulation p 97.8 7.4E-05 1.6E-09 64.0 6.9 36 157-192 2-37 (167)
149 KOG0730 AAA+-type ATPase [Post 97.8 0.00041 8.9E-09 69.6 12.8 170 136-332 435-636 (693)
150 PRK06964 DNA polymerase III su 97.8 0.0018 3.8E-08 61.9 16.8 91 237-339 131-225 (342)
151 KOG0743 AAA+-type ATPase [Post 97.8 0.0011 2.5E-08 63.8 15.3 151 157-345 236-416 (457)
152 KOG2228 Origin recognition com 97.7 0.00042 9E-09 64.0 11.7 171 135-308 24-220 (408)
153 TIGR02639 ClpA ATP-dependent C 97.7 0.00028 6.1E-09 75.2 12.3 46 135-180 454-508 (731)
154 KOG0741 AAA+-type ATPase [Post 97.7 0.00081 1.8E-08 65.7 14.1 145 155-329 537-704 (744)
155 PRK10536 hypothetical protein; 97.7 0.00028 6E-09 63.8 9.9 43 136-180 56-98 (262)
156 TIGR01243 CDC48 AAA family ATP 97.7 0.00069 1.5E-08 72.4 14.4 171 135-333 453-657 (733)
157 PRK12727 flagellar biosynthesi 97.7 0.0016 3.5E-08 64.9 15.7 88 156-248 350-438 (559)
158 PRK06526 transposase; Provisio 97.7 7.1E-05 1.5E-09 68.6 5.9 26 155-180 97-122 (254)
159 PLN00020 ribulose bisphosphate 97.7 0.0015 3.2E-08 62.0 14.3 26 155-180 147-172 (413)
160 PRK04296 thymidine kinase; Pro 97.7 6.1E-05 1.3E-09 66.1 4.9 114 157-279 3-118 (190)
161 PRK06921 hypothetical protein; 97.7 0.00016 3.5E-09 66.9 7.9 39 155-195 116-154 (266)
162 PRK07261 topology modulation p 97.6 0.00016 3.5E-09 62.2 7.4 66 158-248 2-67 (171)
163 COG1223 Predicted ATPase (AAA+ 97.6 0.0014 3E-08 58.4 12.8 171 135-333 121-319 (368)
164 TIGR02902 spore_lonB ATP-depen 97.6 0.00051 1.1E-08 70.2 11.8 46 135-180 65-110 (531)
165 KOG0744 AAA+-type ATPase [Post 97.6 0.00013 2.9E-09 66.7 6.6 82 156-249 177-261 (423)
166 KOG0735 AAA+-type ATPase [Post 97.6 0.00052 1.1E-08 69.3 11.1 151 155-332 430-608 (952)
167 PRK07952 DNA replication prote 97.6 0.00024 5.3E-09 64.5 8.2 86 144-248 85-172 (244)
168 PRK09183 transposase/IS protei 97.6 0.00018 3.8E-09 66.4 7.2 25 156-180 102-126 (259)
169 PRK04132 replication factor C 97.6 0.0017 3.7E-08 68.8 15.3 157 161-339 569-731 (846)
170 PRK10865 protein disaggregatio 97.6 0.00044 9.5E-09 74.6 11.1 46 135-180 568-622 (857)
171 TIGR03345 VI_ClpV1 type VI sec 97.6 0.00021 4.6E-09 76.8 8.4 47 134-180 565-620 (852)
172 COG0542 clpA ATP-binding subun 97.6 0.00024 5.2E-09 73.7 8.4 115 135-260 491-617 (786)
173 CHL00095 clpC Clp protease ATP 97.6 0.0003 6.6E-09 75.9 9.4 131 134-276 508-661 (821)
174 cd01120 RecA-like_NTPases RecA 97.5 0.00034 7.3E-09 59.6 8.0 39 158-199 1-39 (165)
175 KOG0734 AAA+-type ATPase conta 97.5 0.00084 1.8E-08 65.7 11.1 45 136-180 305-361 (752)
176 PF07693 KAP_NTPase: KAP famil 97.5 0.0023 5.1E-08 61.5 14.4 40 141-180 2-44 (325)
177 KOG0728 26S proteasome regulat 97.5 0.003 6.6E-08 55.9 13.3 167 136-326 147-350 (404)
178 KOG0731 AAA+-type ATPase conta 97.5 0.0022 4.8E-08 66.3 14.4 175 135-336 311-521 (774)
179 KOG0733 Nuclear AAA ATPase (VC 97.5 0.0012 2.7E-08 65.6 11.9 152 157-334 546-719 (802)
180 PF14532 Sigma54_activ_2: Sigm 97.5 0.00017 3.8E-09 59.7 5.4 43 138-180 1-45 (138)
181 TIGR03346 chaperone_ClpB ATP-d 97.5 0.00065 1.4E-08 73.6 11.0 61 135-198 565-634 (852)
182 PRK08699 DNA polymerase III su 97.5 0.0042 9.1E-08 59.2 15.2 69 237-306 112-184 (325)
183 PF03215 Rad17: Rad17 cell cyc 97.5 0.00093 2E-08 67.5 11.1 55 135-194 19-78 (519)
184 PRK09361 radB DNA repair and r 97.5 0.00051 1.1E-08 62.2 8.5 89 155-248 22-117 (225)
185 COG0470 HolB ATPase involved i 97.5 0.0013 2.8E-08 63.2 11.8 44 137-180 3-48 (325)
186 PRK06835 DNA replication prote 97.5 0.0002 4.3E-09 68.2 5.9 102 156-276 183-288 (329)
187 PRK14722 flhF flagellar biosyn 97.5 0.0071 1.5E-07 58.4 16.4 88 156-248 137-225 (374)
188 PF01695 IstB_IS21: IstB-like 97.4 0.00011 2.3E-09 63.7 3.4 73 155-248 46-118 (178)
189 smart00763 AAA_PrkA PrkA AAA d 97.4 0.00027 5.9E-09 67.1 5.9 45 136-180 52-102 (361)
190 PF02562 PhoH: PhoH-like prote 97.4 0.00057 1.2E-08 60.0 7.4 129 139-277 4-156 (205)
191 PRK08939 primosomal protein Dn 97.4 0.00073 1.6E-08 63.8 8.6 117 139-276 135-260 (306)
192 TIGR02237 recomb_radB DNA repa 97.3 0.00065 1.4E-08 60.7 7.5 89 155-248 11-107 (209)
193 PF13207 AAA_17: AAA domain; P 97.3 0.00016 3.5E-09 58.4 3.2 23 158-180 1-23 (121)
194 PRK10733 hflB ATP-dependent me 97.3 0.0023 5.1E-08 67.0 12.6 169 136-331 153-355 (644)
195 cd01393 recA_like RecA is a b 97.3 0.002 4.4E-08 58.3 10.6 93 155-248 18-124 (226)
196 KOG0736 Peroxisome assembly fa 97.3 0.014 3.1E-07 59.9 17.0 91 135-249 672-775 (953)
197 PRK06067 flagellar accessory p 97.3 0.0012 2.7E-08 60.1 9.1 88 155-248 24-130 (234)
198 cd01131 PilT Pilus retraction 97.3 0.00047 1E-08 61.0 6.0 109 157-279 2-111 (198)
199 PRK06762 hypothetical protein; 97.3 0.0044 9.5E-08 53.1 12.0 24 157-180 3-26 (166)
200 COG2884 FtsE Predicted ATPase 97.3 0.0022 4.8E-08 54.5 9.5 124 155-283 27-203 (223)
201 cd01394 radB RadB. The archaea 97.3 0.0016 3.5E-08 58.6 9.5 42 155-199 18-59 (218)
202 KOG2035 Replication factor C, 97.3 0.0024 5.1E-08 57.5 9.8 210 136-363 14-262 (351)
203 TIGR02974 phageshock_pspF psp 97.3 0.011 2.3E-07 56.8 15.2 44 137-180 1-46 (329)
204 PF00448 SRP54: SRP54-type pro 97.3 0.00078 1.7E-08 59.2 6.8 88 157-247 2-92 (196)
205 cd00561 CobA_CobO_BtuR ATP:cor 97.3 0.0011 2.5E-08 55.6 7.4 117 157-278 3-139 (159)
206 cd01123 Rad51_DMC1_radA Rad51_ 97.2 0.0022 4.7E-08 58.5 9.7 93 155-248 18-125 (235)
207 PRK11034 clpA ATP-dependent Cl 97.2 0.0018 3.9E-08 68.5 10.3 46 135-180 458-512 (758)
208 KOG0739 AAA+-type ATPase [Post 97.2 0.0071 1.5E-07 55.1 12.1 90 135-248 133-235 (439)
209 cd03238 ABC_UvrA The excision 97.2 0.0022 4.8E-08 55.3 8.7 125 155-291 20-161 (176)
210 COG1484 DnaC DNA replication p 97.2 0.0018 3.9E-08 59.4 8.5 74 155-248 104-177 (254)
211 TIGR02012 tigrfam_recA protein 97.2 0.0011 2.4E-08 62.5 7.1 86 155-248 54-143 (321)
212 KOG0735 AAA+-type ATPase [Post 97.2 0.016 3.5E-07 59.0 15.3 172 136-335 668-872 (952)
213 KOG0727 26S proteasome regulat 97.1 0.0036 7.8E-08 55.5 9.5 161 137-321 157-353 (408)
214 COG0464 SpoVK ATPases of the A 97.1 0.0044 9.5E-08 63.2 11.8 134 155-311 275-427 (494)
215 cd03216 ABC_Carb_Monos_I This 97.1 0.0009 1.9E-08 57.2 5.7 116 155-280 25-145 (163)
216 COG1136 SalX ABC-type antimicr 97.1 0.0027 5.9E-08 56.4 8.8 59 225-283 147-209 (226)
217 cd03246 ABCC_Protease_Secretio 97.1 0.0018 3.9E-08 56.0 7.6 26 155-180 27-52 (173)
218 KOG1969 DNA replication checkp 97.1 0.0013 2.7E-08 66.9 7.3 72 155-249 325-398 (877)
219 TIGR02858 spore_III_AA stage I 97.1 0.0041 8.9E-08 57.5 10.2 123 145-279 99-231 (270)
220 cd00983 recA RecA is a bacter 97.1 0.0012 2.6E-08 62.3 6.7 86 155-248 54-143 (325)
221 cd03222 ABC_RNaseL_inhibitor T 97.1 0.0014 3.1E-08 56.6 6.5 26 155-180 24-49 (177)
222 PF10236 DAP3: Mitochondrial r 97.1 0.019 4.1E-07 54.5 14.6 49 288-336 258-306 (309)
223 COG0465 HflB ATP-dependent Zn 97.1 0.0089 1.9E-07 60.7 12.9 173 135-334 150-356 (596)
224 TIGR03877 thermo_KaiC_1 KaiC d 97.1 0.003 6.5E-08 57.6 9.0 88 155-248 20-136 (237)
225 PRK06696 uridine kinase; Valid 97.1 0.00077 1.7E-08 60.9 5.0 42 139-180 2-46 (223)
226 cd03230 ABC_DR_subfamily_A Thi 97.1 0.0017 3.6E-08 56.1 6.9 120 155-281 25-159 (173)
227 TIGR01650 PD_CobS cobaltochela 97.1 0.038 8.3E-07 52.1 16.2 63 134-204 44-106 (327)
228 COG0542 clpA ATP-binding subun 97.1 0.0025 5.5E-08 66.3 9.2 154 135-306 170-345 (786)
229 cd03247 ABCC_cytochrome_bd The 97.1 0.0028 6.1E-08 55.0 8.2 119 155-281 27-161 (178)
230 PF08423 Rad51: Rad51; InterP 97.1 0.0025 5.3E-08 58.7 8.2 92 155-247 37-142 (256)
231 cd01121 Sms Sms (bacterial rad 97.0 0.0027 5.8E-08 61.6 8.8 85 155-248 81-168 (372)
232 PRK09354 recA recombinase A; P 97.0 0.0015 3.3E-08 62.1 6.8 86 155-248 59-148 (349)
233 TIGR00708 cobA cob(I)alamin ad 97.0 0.0038 8.3E-08 53.1 8.5 117 156-278 5-141 (173)
234 PRK07132 DNA polymerase III su 97.0 0.039 8.4E-07 51.9 16.0 167 144-338 5-184 (299)
235 cd01133 F1-ATPase_beta F1 ATP 97.0 0.0016 3.5E-08 59.8 6.6 92 155-249 68-174 (274)
236 PF13604 AAA_30: AAA domain; P 97.0 0.0019 4.2E-08 56.9 6.9 32 149-180 11-42 (196)
237 TIGR02238 recomb_DMC1 meiotic 97.0 0.0039 8.4E-08 59.1 9.3 93 155-248 95-201 (313)
238 PRK14723 flhF flagellar biosyn 97.0 0.048 1E-06 57.4 17.8 25 156-180 185-209 (767)
239 PRK05541 adenylylsulfate kinas 97.0 0.0015 3.3E-08 56.6 5.9 36 155-193 6-41 (176)
240 PRK15455 PrkA family serine pr 97.0 0.00095 2.1E-08 66.9 4.9 45 136-180 77-127 (644)
241 cd03228 ABCC_MRP_Like The MRP 97.0 0.0035 7.7E-08 54.0 8.0 26 155-180 27-52 (171)
242 KOG0729 26S proteasome regulat 97.0 0.0026 5.7E-08 56.8 7.1 44 137-180 179-235 (435)
243 PRK08533 flagellar accessory p 97.0 0.0037 8.1E-08 56.6 8.4 48 156-208 24-71 (230)
244 cd03214 ABC_Iron-Siderophores_ 97.0 0.004 8.6E-08 54.2 8.3 122 155-280 24-161 (180)
245 cd03115 SRP The signal recogni 97.0 0.0028 6.1E-08 54.7 7.3 88 158-248 2-92 (173)
246 COG4133 CcmA ABC-type transpor 97.0 0.0051 1.1E-07 52.3 8.4 25 156-180 28-52 (209)
247 cd03229 ABC_Class3 This class 96.9 0.0021 4.5E-08 55.9 6.4 26 155-180 25-50 (178)
248 PRK15429 formate hydrogenlyase 96.9 0.099 2.1E-06 55.7 20.2 46 135-180 376-423 (686)
249 cd03223 ABCD_peroxisomal_ALDP 96.9 0.0034 7.3E-08 53.8 7.5 116 155-280 26-151 (166)
250 PF00485 PRK: Phosphoribulokin 96.9 0.0051 1.1E-07 54.2 8.7 82 158-242 1-87 (194)
251 cd01129 PulE-GspE PulE/GspE Th 96.9 0.0036 7.8E-08 57.9 8.0 105 138-256 62-167 (264)
252 COG1066 Sms Predicted ATP-depe 96.9 0.0055 1.2E-07 58.5 9.1 97 144-248 79-178 (456)
253 TIGR01069 mutS2 MutS2 family p 96.9 0.0052 1.1E-07 65.4 10.2 24 156-179 322-345 (771)
254 PRK05703 flhF flagellar biosyn 96.9 0.045 9.8E-07 54.3 15.9 87 156-247 221-308 (424)
255 PRK13539 cytochrome c biogenes 96.9 0.0056 1.2E-07 54.6 8.7 26 155-180 27-52 (207)
256 TIGR01817 nifA Nif-specific re 96.9 0.01 2.2E-07 61.2 11.7 47 134-180 195-243 (534)
257 PF07728 AAA_5: AAA domain (dy 96.9 0.0024 5.2E-08 52.9 5.8 42 159-206 2-43 (139)
258 PRK06547 hypothetical protein; 96.8 0.0017 3.6E-08 55.9 4.9 34 147-180 6-39 (172)
259 PHA00729 NTP-binding motif con 96.8 0.0014 3.1E-08 58.2 4.5 35 146-180 7-41 (226)
260 COG4608 AppF ABC-type oligopep 96.8 0.0058 1.3E-07 55.4 8.4 124 155-284 38-177 (268)
261 PRK05986 cob(I)alamin adenolsy 96.8 0.0043 9.3E-08 53.6 7.2 119 155-278 21-159 (191)
262 COG0572 Udk Uridine kinase [Nu 96.8 0.0038 8.1E-08 54.9 6.9 78 156-239 8-85 (218)
263 COG2607 Predicted ATPase (AAA+ 96.8 0.012 2.7E-07 52.0 9.9 46 135-180 60-109 (287)
264 PF13238 AAA_18: AAA domain; P 96.8 0.001 2.2E-08 54.2 3.0 22 159-180 1-22 (129)
265 PRK00771 signal recognition pa 96.8 0.0078 1.7E-07 59.5 9.6 57 155-214 94-151 (437)
266 PLN03187 meiotic recombination 96.8 0.014 3E-07 55.9 10.9 93 155-248 125-231 (344)
267 COG1875 NYN ribonuclease and A 96.8 0.0024 5.3E-08 59.8 5.6 133 138-278 227-389 (436)
268 cd00267 ABC_ATPase ABC (ATP-bi 96.8 0.0034 7.3E-08 53.3 6.2 118 156-282 25-145 (157)
269 PRK04301 radA DNA repair and r 96.8 0.011 2.4E-07 56.5 10.3 58 155-213 101-161 (317)
270 KOG0737 AAA+-type ATPase [Post 96.8 0.021 4.4E-07 53.8 11.5 49 136-187 93-155 (386)
271 KOG0738 AAA+-type ATPase [Post 96.8 0.019 4E-07 54.4 11.2 25 156-180 245-269 (491)
272 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.7 0.0025 5.5E-08 53.1 5.1 103 155-280 25-130 (144)
273 COG0468 RecA RecA/RadA recombi 96.7 0.0077 1.7E-07 55.6 8.7 91 155-248 59-151 (279)
274 PRK04328 hypothetical protein; 96.7 0.0053 1.2E-07 56.4 7.7 41 155-198 22-62 (249)
275 COG1121 ZnuC ABC-type Mn/Zn tr 96.7 0.014 3.1E-07 52.7 10.1 123 156-281 30-203 (254)
276 PRK07667 uridine kinase; Provi 96.7 0.0031 6.8E-08 55.5 5.9 37 144-180 3-41 (193)
277 PRK13531 regulatory ATPase Rav 96.7 0.0024 5.1E-08 63.2 5.5 44 135-180 20-63 (498)
278 PRK11823 DNA repair protein Ra 96.7 0.0058 1.3E-07 61.0 8.3 95 145-248 67-166 (446)
279 COG1618 Predicted nucleotide k 96.7 0.0017 3.6E-08 53.7 3.6 24 157-180 6-29 (179)
280 COG0396 sufC Cysteine desulfur 96.7 0.0073 1.6E-07 53.1 7.6 64 227-290 151-217 (251)
281 cd03283 ABC_MutS-like MutS-lik 96.7 0.007 1.5E-07 53.5 7.7 23 157-179 26-48 (199)
282 COG1102 Cmk Cytidylate kinase 96.7 0.0024 5.3E-08 52.7 4.3 44 158-215 2-45 (179)
283 TIGR03499 FlhF flagellar biosy 96.7 0.008 1.7E-07 56.3 8.5 87 156-247 194-281 (282)
284 PTZ00035 Rad51 protein; Provis 96.7 0.019 4.2E-07 55.0 11.2 93 155-248 117-223 (337)
285 PF12775 AAA_7: P-loop contain 96.7 0.0021 4.4E-08 59.7 4.4 56 145-204 23-78 (272)
286 TIGR03881 KaiC_arch_4 KaiC dom 96.7 0.013 2.7E-07 53.2 9.5 40 155-197 19-58 (229)
287 COG4618 ArpD ABC-type protease 96.6 0.0035 7.7E-08 61.2 6.0 25 156-180 362-386 (580)
288 PRK08233 hypothetical protein; 96.6 0.0017 3.6E-08 56.6 3.5 25 156-180 3-27 (182)
289 PRK05342 clpX ATP-dependent pr 96.6 0.0046 1E-07 60.8 6.9 46 135-180 71-132 (412)
290 COG1126 GlnQ ABC-type polar am 96.6 0.011 2.3E-07 51.6 8.2 25 155-179 27-51 (240)
291 cd02019 NK Nucleoside/nucleoti 96.6 0.0016 3.5E-08 46.6 2.8 23 158-180 1-23 (69)
292 PRK13765 ATP-dependent proteas 96.6 0.004 8.6E-08 64.5 6.6 75 134-213 30-104 (637)
293 COG1120 FepC ABC-type cobalami 96.6 0.0083 1.8E-07 54.5 7.9 26 155-180 27-52 (258)
294 cd03215 ABC_Carb_Monos_II This 96.6 0.0072 1.6E-07 52.6 7.4 26 155-180 25-50 (182)
295 cd03269 ABC_putative_ATPase Th 96.6 0.0079 1.7E-07 53.8 7.8 26 155-180 25-50 (210)
296 PF13671 AAA_33: AAA domain; P 96.6 0.0017 3.7E-08 54.0 3.3 23 158-180 1-23 (143)
297 PRK12678 transcription termina 96.6 0.003 6.6E-08 63.2 5.4 92 155-248 415-513 (672)
298 TIGR00959 ffh signal recogniti 96.6 0.0075 1.6E-07 59.5 8.2 25 156-180 99-123 (428)
299 PRK10867 signal recognition pa 96.6 0.0076 1.7E-07 59.5 8.2 26 155-180 99-124 (433)
300 PRK13538 cytochrome c biogenes 96.6 0.013 2.8E-07 52.1 9.1 26 155-180 26-51 (204)
301 PLN03186 DNA repair protein RA 96.6 0.018 3.9E-07 55.2 10.5 93 155-248 122-228 (342)
302 PRK13540 cytochrome c biogenes 96.6 0.015 3.2E-07 51.6 9.4 26 155-180 26-51 (200)
303 TIGR02236 recomb_radA DNA repa 96.6 0.016 3.5E-07 55.2 10.1 58 155-213 94-154 (310)
304 TIGR00390 hslU ATP-dependent p 96.6 0.0056 1.2E-07 59.4 6.7 46 135-180 12-71 (441)
305 TIGR02239 recomb_RAD51 DNA rep 96.6 0.016 3.5E-07 55.0 9.8 92 155-247 95-200 (316)
306 PRK14721 flhF flagellar biosyn 96.5 0.019 4.2E-07 56.3 10.4 25 156-180 191-215 (420)
307 PRK10463 hydrogenase nickel in 96.5 0.011 2.3E-07 54.9 8.1 34 147-180 95-128 (290)
308 PF13481 AAA_25: AAA domain; P 96.5 0.0074 1.6E-07 53.1 6.9 52 156-209 32-90 (193)
309 PRK13543 cytochrome c biogenes 96.5 0.017 3.7E-07 51.8 9.3 26 155-180 36-61 (214)
310 TIGR00764 lon_rel lon-related 96.5 0.0092 2E-07 62.0 8.4 74 135-213 18-91 (608)
311 PRK05480 uridine/cytidine kina 96.5 0.0022 4.8E-08 57.3 3.4 26 155-180 5-30 (209)
312 PTZ00301 uridine kinase; Provi 96.5 0.0021 4.6E-08 57.1 3.2 25 156-180 3-27 (210)
313 cd02027 APSK Adenosine 5'-phos 96.5 0.017 3.6E-07 48.5 8.5 23 158-180 1-23 (149)
314 KOG0726 26S proteasome regulat 96.5 0.042 9.1E-07 50.1 11.2 45 136-180 186-243 (440)
315 PRK14974 cell division protein 96.5 0.025 5.4E-07 54.0 10.6 90 155-248 139-232 (336)
316 PF00910 RNA_helicase: RNA hel 96.5 0.0017 3.6E-08 51.1 2.2 22 159-180 1-22 (107)
317 TIGR00416 sms DNA repair prote 96.5 0.01 2.2E-07 59.4 8.2 95 144-248 80-180 (454)
318 TIGR01420 pilT_fam pilus retra 96.5 0.0061 1.3E-07 58.8 6.5 112 155-279 121-232 (343)
319 TIGR03878 thermo_KaiC_2 KaiC d 96.5 0.014 3E-07 54.0 8.5 40 155-197 35-74 (259)
320 PF00158 Sigma54_activat: Sigm 96.5 0.0053 1.1E-07 52.6 5.3 44 137-180 1-46 (168)
321 cd03217 ABC_FeS_Assembly ABC-t 96.5 0.0096 2.1E-07 52.8 7.2 25 155-179 25-49 (200)
322 cd02025 PanK Pantothenate kina 96.5 0.017 3.6E-07 52.0 8.7 23 158-180 1-23 (220)
323 PRK14527 adenylate kinase; Pro 96.4 0.0047 1E-07 54.3 5.1 26 155-180 5-30 (191)
324 cd03281 ABC_MSH5_euk MutS5 hom 96.4 0.0026 5.6E-08 56.9 3.4 23 156-178 29-51 (213)
325 PRK08972 fliI flagellum-specif 96.4 0.0057 1.2E-07 59.9 6.0 90 155-249 161-263 (444)
326 TIGR00064 ftsY signal recognit 96.4 0.016 3.6E-07 53.8 8.8 91 155-248 71-164 (272)
327 TIGR00150 HI0065_YjeE ATPase, 96.4 0.0063 1.4E-07 49.5 5.3 39 142-180 6-46 (133)
328 PRK05973 replicative DNA helic 96.4 0.018 4E-07 51.9 8.9 49 155-208 63-111 (237)
329 COG0563 Adk Adenylate kinase a 96.4 0.0062 1.3E-07 52.6 5.6 23 158-180 2-24 (178)
330 COG2274 SunT ABC-type bacterio 96.4 0.017 3.6E-07 60.8 9.8 26 155-180 498-523 (709)
331 PRK09270 nucleoside triphospha 96.4 0.005 1.1E-07 55.8 5.3 27 154-180 31-57 (229)
332 cd03213 ABCG_EPDR ABCG transpo 96.4 0.014 3E-07 51.5 7.9 26 155-180 34-59 (194)
333 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.4 0.011 2.3E-07 53.5 7.2 26 155-180 47-72 (224)
334 KOG1970 Checkpoint RAD17-RFC c 96.4 0.04 8.7E-07 54.6 11.4 40 141-180 88-134 (634)
335 TIGR00554 panK_bact pantothena 96.4 0.023 5E-07 53.0 9.6 26 155-180 61-86 (290)
336 KOG1051 Chaperone HSP104 and r 96.4 0.017 3.6E-07 61.4 9.4 100 136-249 563-671 (898)
337 PF07726 AAA_3: ATPase family 96.4 0.0019 4.1E-08 51.7 2.0 28 159-189 2-29 (131)
338 TIGR01360 aden_kin_iso1 adenyl 96.4 0.0029 6.2E-08 55.4 3.3 26 155-180 2-27 (188)
339 COG1131 CcmA ABC-type multidru 96.4 0.018 4E-07 54.2 8.9 25 156-180 31-55 (293)
340 PF03308 ArgK: ArgK protein; 96.4 0.0058 1.3E-07 55.0 5.2 62 143-205 14-77 (266)
341 PRK11889 flhF flagellar biosyn 96.4 0.018 3.9E-07 55.5 8.7 89 155-248 240-330 (436)
342 cd01125 repA Hexameric Replica 96.4 0.028 6E-07 51.4 9.9 23 158-180 3-25 (239)
343 PF13245 AAA_19: Part of AAA d 96.4 0.0077 1.7E-07 43.9 5.0 26 155-180 9-34 (76)
344 PRK03839 putative kinase; Prov 96.4 0.0028 6E-08 55.2 3.1 23 158-180 2-24 (180)
345 PRK05917 DNA polymerase III su 96.4 0.11 2.4E-06 48.4 13.6 38 143-180 5-43 (290)
346 TIGR00235 udk uridine kinase. 96.4 0.003 6.6E-08 56.3 3.4 26 155-180 5-30 (207)
347 PF01583 APS_kinase: Adenylyls 96.4 0.0037 8E-08 52.3 3.6 36 156-194 2-37 (156)
348 cd03268 ABC_BcrA_bacitracin_re 96.4 0.016 3.4E-07 51.7 8.1 26 155-180 25-50 (208)
349 cd03231 ABC_CcmA_heme_exporter 96.3 0.019 4.2E-07 50.8 8.5 26 155-180 25-50 (201)
350 PRK05201 hslU ATP-dependent pr 96.3 0.011 2.4E-07 57.5 7.0 47 134-180 14-74 (443)
351 PRK05922 type III secretion sy 96.3 0.012 2.6E-07 57.8 7.4 90 155-249 156-258 (434)
352 PF00006 ATP-synt_ab: ATP synt 96.3 0.013 2.7E-07 52.3 6.9 87 155-248 14-115 (215)
353 COG2401 ABC-type ATPase fused 96.3 0.012 2.6E-07 56.2 7.0 44 137-180 373-433 (593)
354 COG3854 SpoIIIAA ncharacterize 96.3 0.016 3.5E-07 50.9 7.2 120 147-279 128-255 (308)
355 PF06745 KaiC: KaiC; InterPro 96.3 0.0091 2E-07 54.0 6.1 87 155-247 18-124 (226)
356 TIGR03575 selen_PSTK_euk L-ser 96.3 0.031 6.7E-07 53.3 9.8 22 159-180 2-23 (340)
357 PTZ00088 adenylate kinase 1; P 96.3 0.0039 8.5E-08 56.2 3.6 23 158-180 8-30 (229)
358 PF13086 AAA_11: AAA domain; P 96.3 0.0069 1.5E-07 54.9 5.3 66 143-210 6-75 (236)
359 cd03369 ABCC_NFT1 Domain 2 of 96.3 0.036 7.7E-07 49.4 9.8 26 155-180 33-58 (207)
360 PRK06002 fliI flagellum-specif 96.3 0.012 2.6E-07 58.0 7.1 90 155-249 164-265 (450)
361 PF00625 Guanylate_kin: Guanyl 96.2 0.0065 1.4E-07 53.0 4.8 37 156-195 2-38 (183)
362 PRK04040 adenylate kinase; Pro 96.2 0.0038 8.2E-08 54.6 3.2 24 157-180 3-26 (188)
363 cd01132 F1_ATPase_alpha F1 ATP 96.2 0.012 2.5E-07 54.1 6.4 96 155-257 68-181 (274)
364 PRK12723 flagellar biosynthesi 96.2 0.025 5.4E-07 55.1 9.1 89 156-248 174-264 (388)
365 COG1703 ArgK Putative periplas 96.2 0.0062 1.3E-07 55.7 4.6 62 145-207 38-101 (323)
366 TIGR02868 CydC thiol reductant 96.2 0.016 3.4E-07 59.8 8.3 26 155-180 360-385 (529)
367 COG4088 Predicted nucleotide k 96.2 0.043 9.4E-07 47.4 9.3 24 157-180 2-25 (261)
368 cd01136 ATPase_flagellum-secre 96.2 0.02 4.4E-07 54.2 8.2 88 155-249 68-170 (326)
369 COG0541 Ffh Signal recognition 96.2 0.25 5.4E-06 48.0 15.4 56 156-214 100-156 (451)
370 cd03232 ABC_PDR_domain2 The pl 96.2 0.013 2.8E-07 51.5 6.5 25 155-179 32-56 (192)
371 KOG3347 Predicted nucleotide k 96.2 0.0071 1.5E-07 49.3 4.3 25 156-180 7-31 (176)
372 PRK00131 aroK shikimate kinase 96.2 0.0044 9.6E-08 53.4 3.5 25 156-180 4-28 (175)
373 cd00544 CobU Adenosylcobinamid 96.2 0.031 6.7E-07 47.9 8.6 80 158-247 1-82 (169)
374 TIGR01359 UMP_CMP_kin_fam UMP- 96.2 0.0034 7.3E-08 54.8 2.7 23 158-180 1-23 (183)
375 PRK08149 ATP synthase SpaL; Va 96.2 0.027 5.8E-07 55.4 9.1 90 155-249 150-252 (428)
376 PRK06217 hypothetical protein; 96.2 0.0087 1.9E-07 52.2 5.3 23 158-180 3-25 (183)
377 TIGR01188 drrA daunorubicin re 96.2 0.019 4.1E-07 54.5 7.9 26 155-180 18-43 (302)
378 PRK09544 znuC high-affinity zi 96.2 0.029 6.2E-07 51.7 8.9 26 155-180 29-54 (251)
379 cd02028 UMPK_like Uridine mono 96.2 0.012 2.5E-07 51.2 5.9 23 158-180 1-23 (179)
380 COG1428 Deoxynucleoside kinase 96.2 0.0097 2.1E-07 51.8 5.3 25 156-180 4-28 (216)
381 KOG0651 26S proteasome regulat 96.2 0.016 3.4E-07 53.2 6.9 25 156-180 166-190 (388)
382 PRK00625 shikimate kinase; Pro 96.2 0.0042 9.2E-08 53.4 3.1 23 158-180 2-24 (173)
383 PRK15453 phosphoribulokinase; 96.2 0.031 6.8E-07 51.4 8.9 26 155-180 4-29 (290)
384 PRK08927 fliI flagellum-specif 96.2 0.022 4.8E-07 56.1 8.4 90 155-249 157-259 (442)
385 PF08433 KTI12: Chromatin asso 96.2 0.0065 1.4E-07 56.2 4.5 24 157-180 2-25 (270)
386 TIGR00382 clpX endopeptidase C 96.2 0.021 4.6E-07 56.0 8.2 47 134-180 76-140 (413)
387 TIGR02655 circ_KaiC circadian 96.2 0.027 5.8E-07 57.1 9.4 98 145-248 250-363 (484)
388 PRK09519 recA DNA recombinatio 96.2 0.025 5.5E-07 59.5 9.3 86 155-248 59-148 (790)
389 PRK05439 pantothenate kinase; 96.1 0.046 9.9E-07 51.5 10.1 26 155-180 85-110 (311)
390 cd01122 GP4d_helicase GP4d_hel 96.1 0.043 9.3E-07 51.2 10.1 53 155-211 29-81 (271)
391 cd03250 ABCC_MRP_domain1 Domai 96.1 0.028 6.2E-07 49.9 8.5 26 155-180 30-55 (204)
392 cd00227 CPT Chloramphenicol (C 96.1 0.0049 1.1E-07 53.3 3.5 25 156-180 2-26 (175)
393 CHL00206 ycf2 Ycf2; Provisiona 96.1 0.04 8.8E-07 62.6 11.0 25 156-180 1630-1654(2281)
394 TIGR03498 FliI_clade3 flagella 96.1 0.013 2.9E-07 57.5 6.7 91 155-249 139-241 (418)
395 TIGR02322 phosphon_PhnN phosph 96.1 0.0047 1E-07 53.6 3.2 24 157-180 2-25 (179)
396 COG1419 FlhF Flagellar GTP-bin 96.1 0.05 1.1E-06 52.4 10.2 100 144-248 187-291 (407)
397 cd02023 UMPK Uridine monophosp 96.1 0.004 8.7E-08 55.1 2.8 23 158-180 1-23 (198)
398 PRK12726 flagellar biosynthesi 96.1 0.033 7.2E-07 53.5 9.0 89 155-248 205-295 (407)
399 PRK13407 bchI magnesium chelat 96.1 0.0079 1.7E-07 57.4 4.9 46 135-180 8-53 (334)
400 PRK00409 recombination and DNA 96.1 0.02 4.4E-07 61.2 8.4 178 155-361 326-527 (782)
401 CHL00081 chlI Mg-protoporyphyr 96.1 0.0084 1.8E-07 57.4 5.0 46 135-180 17-62 (350)
402 TIGR02030 BchI-ChlI magnesium 96.1 0.0094 2E-07 57.0 5.3 46 135-180 4-49 (337)
403 PF00154 RecA: recA bacterial 96.1 0.018 4E-07 54.2 7.1 87 155-249 52-142 (322)
404 PRK12724 flagellar biosynthesi 96.1 0.021 4.4E-07 55.8 7.5 25 156-180 223-247 (432)
405 cd01135 V_A-ATPase_B V/A-type 96.0 0.026 5.7E-07 51.8 7.8 102 155-256 68-185 (276)
406 smart00534 MUTSac ATPase domai 96.0 0.0014 3E-08 57.3 -0.5 21 158-178 1-21 (185)
407 cd01130 VirB11-like_ATPase Typ 96.0 0.0095 2.1E-07 52.1 4.8 105 144-256 14-118 (186)
408 PF03266 NTPase_1: NTPase; In 96.0 0.0047 1E-07 52.8 2.8 22 159-180 2-23 (168)
409 cd01124 KaiC KaiC is a circadi 96.0 0.0073 1.6E-07 52.8 3.9 44 158-206 1-44 (187)
410 cd02021 GntK Gluconate kinase 96.0 0.0051 1.1E-07 51.7 2.8 23 158-180 1-23 (150)
411 cd02024 NRK1 Nicotinamide ribo 96.0 0.0051 1.1E-07 53.5 2.8 23 158-180 1-23 (187)
412 PRK05800 cobU adenosylcobinami 96.0 0.031 6.7E-07 47.9 7.5 83 157-247 2-85 (170)
413 PHA02244 ATPase-like protein 96.0 0.011 2.3E-07 56.6 5.0 44 135-180 96-143 (383)
414 PTZ00494 tuzin-like protein; P 96.0 0.1 2.2E-06 50.8 11.4 166 132-308 368-545 (664)
415 COG0714 MoxR-like ATPases [Gen 96.0 0.02 4.4E-07 55.0 7.1 64 136-207 25-88 (329)
416 cd02020 CMPK Cytidine monophos 95.9 0.0053 1.1E-07 51.3 2.7 23 158-180 1-23 (147)
417 COG1124 DppF ABC-type dipeptid 95.9 0.01 2.2E-07 52.8 4.4 26 155-180 32-57 (252)
418 PRK12597 F0F1 ATP synthase sub 95.9 0.015 3.3E-07 57.6 6.2 92 155-248 142-247 (461)
419 TIGR03263 guanyl_kin guanylate 95.9 0.0063 1.4E-07 52.9 3.2 24 157-180 2-25 (180)
420 PRK00279 adk adenylate kinase; 95.9 0.011 2.4E-07 53.0 5.0 23 158-180 2-24 (215)
421 COG3640 CooC CO dehydrogenase 95.9 0.013 2.9E-07 51.7 5.0 42 158-201 2-43 (255)
422 COG1936 Predicted nucleotide k 95.9 0.0064 1.4E-07 51.0 3.0 20 158-177 2-21 (180)
423 cd00071 GMPK Guanosine monopho 95.9 0.007 1.5E-07 50.0 3.2 23 158-180 1-23 (137)
424 cd03227 ABC_Class2 ABC-type Cl 95.9 0.022 4.9E-07 48.5 6.5 23 157-179 22-44 (162)
425 PRK13947 shikimate kinase; Pro 95.9 0.0063 1.4E-07 52.4 3.1 23 158-180 3-25 (171)
426 PF03205 MobB: Molybdopterin g 95.9 0.0068 1.5E-07 50.2 3.1 39 157-197 1-39 (140)
427 PRK09099 type III secretion sy 95.9 0.037 8.1E-07 54.7 8.7 91 155-249 162-264 (441)
428 PF05970 PIF1: PIF1-like helic 95.9 0.02 4.3E-07 55.8 6.9 37 144-180 10-46 (364)
429 cd03280 ABC_MutS2 MutS2 homolo 95.9 0.0031 6.7E-08 55.9 1.1 21 157-177 29-49 (200)
430 PF08298 AAA_PrkA: PrkA AAA do 95.9 0.014 3.1E-07 55.1 5.5 46 135-180 61-112 (358)
431 PRK06936 type III secretion sy 95.9 0.025 5.4E-07 55.7 7.3 90 155-249 161-263 (439)
432 PF03193 DUF258: Protein of un 95.9 0.014 3E-07 49.2 4.8 36 142-180 24-59 (161)
433 COG0467 RAD55 RecA-superfamily 95.9 0.012 2.5E-07 54.6 4.8 42 155-199 22-63 (260)
434 COG3598 RepA RecA-family ATPas 95.9 0.027 5.8E-07 52.1 6.9 68 147-216 82-157 (402)
435 PRK13537 nodulation ABC transp 95.9 0.037 8.1E-07 52.5 8.3 25 156-180 33-57 (306)
436 cd03282 ABC_MSH4_euk MutS4 hom 95.8 0.038 8.2E-07 49.0 7.7 119 156-284 29-158 (204)
437 TIGR03522 GldA_ABC_ATP gliding 95.8 0.047 1E-06 51.7 9.0 26 155-180 27-52 (301)
438 cd03287 ABC_MSH3_euk MutS3 hom 95.8 0.0061 1.3E-07 54.7 2.7 24 155-178 30-53 (222)
439 PF08477 Miro: Miro-like prote 95.8 0.0081 1.8E-07 48.1 3.1 22 159-180 2-23 (119)
440 PRK13949 shikimate kinase; Pro 95.8 0.0088 1.9E-07 51.4 3.5 23 158-180 3-25 (169)
441 PRK00300 gmk guanylate kinase; 95.8 0.0085 1.8E-07 53.3 3.5 26 155-180 4-29 (205)
442 PRK06793 fliI flagellum-specif 95.8 0.08 1.7E-06 52.2 10.5 91 155-249 155-257 (432)
443 TIGR01313 therm_gnt_kin carboh 95.8 0.0061 1.3E-07 52.0 2.5 22 159-180 1-22 (163)
444 cd02029 PRK_like Phosphoribulo 95.8 0.029 6.3E-07 51.2 6.9 78 158-238 1-84 (277)
445 PRK15064 ABC transporter ATP-b 95.8 0.037 8.1E-07 57.0 8.6 26 155-180 26-51 (530)
446 PRK07196 fliI flagellum-specif 95.8 0.039 8.5E-07 54.3 8.2 90 155-249 154-256 (434)
447 PRK00889 adenylylsulfate kinas 95.8 0.009 1.9E-07 51.7 3.4 26 155-180 3-28 (175)
448 PRK14530 adenylate kinase; Pro 95.8 0.0078 1.7E-07 54.0 3.1 24 157-180 4-27 (215)
449 cd01672 TMPK Thymidine monopho 95.8 0.02 4.3E-07 50.5 5.8 23 158-180 2-24 (200)
450 TIGR01351 adk adenylate kinase 95.8 0.013 2.8E-07 52.4 4.5 22 159-180 2-23 (210)
451 PF02374 ArsA_ATPase: Anion-tr 95.8 0.011 2.3E-07 56.0 4.2 46 157-205 2-47 (305)
452 COG0488 Uup ATPase components 95.7 0.024 5.2E-07 57.5 6.9 133 156-292 348-510 (530)
453 PF06309 Torsin: Torsin; Inte 95.7 0.048 1E-06 43.6 7.1 46 135-180 25-77 (127)
454 PRK10751 molybdopterin-guanine 95.7 0.009 1.9E-07 51.1 3.2 26 155-180 5-30 (173)
455 PRK10875 recD exonuclease V su 95.7 0.034 7.3E-07 57.6 8.0 120 156-279 167-304 (615)
456 PRK13545 tagH teichoic acids e 95.7 0.073 1.6E-06 53.7 9.9 26 155-180 49-74 (549)
457 TIGR03496 FliI_clade1 flagella 95.7 0.027 5.9E-07 55.3 6.9 89 155-248 136-237 (411)
458 PRK14737 gmk guanylate kinase; 95.7 0.01 2.2E-07 51.8 3.5 26 155-180 3-28 (186)
459 KOG2170 ATPase of the AAA+ sup 95.7 0.027 5.8E-07 51.6 6.2 101 135-250 82-190 (344)
460 COG0194 Gmk Guanylate kinase [ 95.7 0.011 2.3E-07 50.4 3.4 25 156-180 4-28 (191)
461 PRK10416 signal recognition pa 95.7 0.065 1.4E-06 51.0 9.1 26 155-180 113-138 (318)
462 TIGR02524 dot_icm_DotB Dot/Icm 95.7 0.025 5.5E-07 54.7 6.4 104 147-255 126-229 (358)
463 KOG1532 GTPase XAB1, interacts 95.7 0.012 2.5E-07 53.0 3.7 62 155-217 18-88 (366)
464 cd00464 SK Shikimate kinase (S 95.7 0.0086 1.9E-07 50.5 2.9 22 159-180 2-23 (154)
465 PF06068 TIP49: TIP49 C-termin 95.7 0.02 4.4E-07 54.3 5.5 47 134-180 23-74 (398)
466 PRK11160 cysteine/glutathione 95.7 0.066 1.4E-06 55.8 10.0 26 155-180 365-390 (574)
467 COG1224 TIP49 DNA helicase TIP 95.7 0.025 5.5E-07 53.0 6.0 53 134-187 38-95 (450)
468 cd00984 DnaB_C DnaB helicase C 95.7 0.06 1.3E-06 49.2 8.7 51 156-210 13-63 (242)
469 TIGR00041 DTMP_kinase thymidyl 95.7 0.023 5E-07 50.0 5.7 24 157-180 4-27 (195)
470 PRK10078 ribose 1,5-bisphospho 95.6 0.0093 2E-07 52.2 3.1 24 157-180 3-26 (186)
471 PRK06995 flhF flagellar biosyn 95.6 0.049 1.1E-06 54.5 8.4 58 156-214 256-314 (484)
472 PRK12339 2-phosphoglycerate ki 95.6 0.011 2.3E-07 52.1 3.5 25 156-180 3-27 (197)
473 PF03029 ATP_bind_1: Conserved 95.6 0.013 2.9E-07 53.2 4.2 33 161-196 1-33 (238)
474 KOG0730 AAA+-type ATPase [Post 95.6 0.18 3.8E-06 51.4 12.2 151 155-333 217-386 (693)
475 TIGR02533 type_II_gspE general 95.6 0.042 9.1E-07 55.5 8.1 103 138-255 224-328 (486)
476 COG1643 HrpA HrpA-like helicas 95.6 0.049 1.1E-06 58.0 8.8 130 141-276 52-204 (845)
477 PHA02774 E1; Provisional 95.6 0.036 7.8E-07 56.0 7.4 48 143-195 420-468 (613)
478 PRK09302 circadian clock prote 95.6 0.07 1.5E-06 54.7 9.9 98 145-248 260-373 (509)
479 PRK05688 fliI flagellum-specif 95.6 0.048 1E-06 53.9 8.2 90 155-249 167-269 (451)
480 CHL00059 atpA ATP synthase CF1 95.6 0.024 5.1E-07 56.3 6.1 88 155-249 140-244 (485)
481 TIGR03375 type_I_sec_LssB type 95.6 0.04 8.6E-07 58.9 8.3 26 155-180 490-515 (694)
482 TIGR00073 hypB hydrogenase acc 95.6 0.013 2.7E-07 52.3 3.9 31 150-180 16-46 (207)
483 PF01078 Mg_chelatase: Magnesi 95.6 0.022 4.8E-07 49.8 5.2 44 135-180 3-46 (206)
484 COG0003 ArsA Predicted ATPase 95.6 0.019 4.1E-07 54.3 5.1 49 156-207 2-50 (322)
485 PF03969 AFG1_ATPase: AFG1-lik 95.6 0.013 2.7E-07 56.7 4.0 100 156-275 62-166 (362)
486 TIGR02788 VirB11 P-type DNA tr 95.6 0.038 8.3E-07 52.5 7.2 110 156-279 144-255 (308)
487 PRK07721 fliI flagellum-specif 95.6 0.058 1.2E-06 53.5 8.6 91 154-248 156-258 (438)
488 PRK05057 aroK shikimate kinase 95.6 0.012 2.6E-07 50.7 3.4 25 156-180 4-28 (172)
489 PRK07594 type III secretion sy 95.6 0.04 8.6E-07 54.3 7.4 90 155-249 154-256 (433)
490 cd00820 PEPCK_HprK Phosphoenol 95.6 0.011 2.4E-07 45.9 2.9 22 156-177 15-36 (107)
491 TIGR01039 atpD ATP synthase, F 95.6 0.04 8.6E-07 54.4 7.3 93 155-249 142-248 (461)
492 PRK06761 hypothetical protein; 95.5 0.025 5.5E-07 52.4 5.6 24 157-180 4-27 (282)
493 PRK13946 shikimate kinase; Pro 95.5 0.013 2.9E-07 51.1 3.7 25 156-180 10-34 (184)
494 PRK09280 F0F1 ATP synthase sub 95.5 0.034 7.4E-07 55.0 6.9 93 155-249 143-249 (463)
495 PRK03846 adenylylsulfate kinas 95.5 0.017 3.7E-07 51.0 4.5 27 154-180 22-48 (198)
496 PRK13657 cyclic beta-1,2-gluca 95.5 0.085 1.8E-06 55.2 10.3 26 155-180 360-385 (588)
497 PRK13975 thymidylate kinase; P 95.5 0.011 2.3E-07 52.2 3.1 24 157-180 3-26 (196)
498 COG1116 TauB ABC-type nitrate/ 95.5 0.011 2.4E-07 52.9 3.1 26 155-180 28-53 (248)
499 PRK14738 gmk guanylate kinase; 95.5 0.013 2.7E-07 52.2 3.5 25 155-179 12-36 (206)
500 PRK13948 shikimate kinase; Pro 95.5 0.015 3.1E-07 50.5 3.8 26 155-180 9-34 (182)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-67 Score=549.42 Aligned_cols=444 Identities=43% Similarity=0.767 Sum_probs=381.4
Q ss_pred HhhHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 037625 14 FNRCLDCFLGEAAYISNLQDNLDALDTELGNLIAKKNDVMRRVVDAERQQMRRLDRVQRWVSRVDAVKTGADELIRDGSQ 93 (467)
Q Consensus 14 ~~~l~~~l~~e~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~Wl~~l~~~~~~~ed~~d~~~~ 93 (467)
++++.+++.+++..+.+.++.+..|+++|..|+.++.++.+. +.. ...+..|.+.++++.|++++.++.|..
T Consensus 9 ~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~-------~~~-~~~~~~~~e~~~~~~~~~e~~~~~~~v 80 (889)
T KOG4658|consen 9 VEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAK-------RDD-LERRVNWEEDVGDLVYLAEDIIWLFLV 80 (889)
T ss_pred hhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhh-------cch-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556678889999999999999999999999999998885433 222 366778999999999999999888765
Q ss_pred hh----------------hhhcccCccCCCchhhhhhccccc------------------cC-CCCCCCCCCCCCCCcc-
Q 037625 94 EI----------------DKLCVGGYCSKNCRSSYKLGKQVV------------------PK-RAPEPVADERPTERTV- 137 (467)
Q Consensus 94 ~~----------------~~~~~~~~~~~~~~~~~~~~~~i~------------------~~-~~~~~~~~~~~~~~~~- 137 (467)
.. ++.|..+.|.+.....+.+++++. .. ..+.......|..+..
T Consensus 81 ~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 160 (889)
T KOG4658|consen 81 EEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD 160 (889)
T ss_pred HHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc
Confidence 43 223444555555555555555554 00 1111122233333323
Q ss_pred ccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC
Q 037625 138 VGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGD 217 (467)
Q Consensus 138 vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 217 (467)
||.+..++++.+.|.+++..+++|+||||+||||||+.++|+...++.+|+.++|+++|+.++...++.+|+..++...+
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~ 240 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDE 240 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCc
Confidence 99999999999999988889999999999999999999999994489999999999999999999999999999998776
Q ss_pred CCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCChhhhhhhccCCCCCCCCCceEEEecCChhhhhh-cCCCcccccCCCCH
Q 037625 218 SWKSRSVEEKALDIFRSLREKRIVLLLDDIWERVDLTKVGVPLSGPKNTTSKVVFTTRFIGVCGS-MEADRKFLVACLSE 296 (467)
Q Consensus 218 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iiiTtR~~~~~~~-~~~~~~~~l~~L~~ 296 (467)
.+......+....+.+.|+++||||||||||+..+|+.+..++ +...+||+|++|||+..+|.. ++....+++..|++
T Consensus 241 ~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~-p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~ 319 (889)
T KOG4658|consen 241 EWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPF-PSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTP 319 (889)
T ss_pred ccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCC-CCccCCeEEEEEeccHhhhhccccCCccccccccCc
Confidence 6666666899999999999999999999999999999999999 677889999999999999988 78888999999999
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHHHHhccCCCHHHHHHHHHHHHhh-hhcccCCccchhh
Q 037625 297 KDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIGRAMAYRKKAEQWRRAIEELRRS-ASKFACLGKEVYP 375 (467)
Q Consensus 297 ~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~ 375 (467)
+|||+||++.++.......+.++++|++++++|+|+|||++++|+.|+.+.+..+|+++.+.+.+. ....++..+.++.
T Consensus 320 ~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~ 399 (889)
T KOG4658|consen 320 EEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILP 399 (889)
T ss_pred cccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHH
Confidence 999999999999876566667999999999999999999999999999999999999999999887 5555666789999
Q ss_pred hHHhchhcCCchhhhHHHHHhhcCCCCcccchHHHHHHHHHhCCccC-CCcccHHHHHHHHHHHHHHccCccccC----C
Q 037625 376 LLKFSYDSLQNDTIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFFGE-SDRSGAENQGYDILDTLVRACLLEELE----D 450 (467)
Q Consensus 376 ~l~~s~~~L~~~~~k~~~l~~a~fp~~~~i~~~~li~~w~aeg~~~~-~~~~~~~~~~~~~l~~L~~~~Ll~~~~----~ 450 (467)
++.+||++||+ +.|.||+|||+||+|+.|+.+.|+.+|+||||+.+ .....+++.|+.|+++|++++|+...+ .
T Consensus 400 iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~ 478 (889)
T KOG4658|consen 400 ILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRK 478 (889)
T ss_pred hhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccce
Confidence 99999999996 99999999999999999999999999999999999 557788999999999999999999862 3
Q ss_pred CeEEecHHHHHHHHHhC
Q 037625 451 DEVKMHDVIRDMALWIT 467 (467)
Q Consensus 451 ~~~~~H~lvr~~a~~i~ 467 (467)
..|.|||+|||+|.++|
T Consensus 479 ~~~kmHDvvRe~al~ia 495 (889)
T KOG4658|consen 479 ETVKMHDVVREMALWIA 495 (889)
T ss_pred eEEEeeHHHHHHHHHHh
Confidence 68999999999999986
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.5e-47 Score=359.70 Aligned_cols=281 Identities=34% Similarity=0.629 Sum_probs=230.0
Q ss_pred chHHHHHHHHHHhc--CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC
Q 037625 140 LQSQLEQVWRCLAE--ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGD 217 (467)
Q Consensus 140 r~~~~~~l~~~L~~--~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 217 (467)
|+.++++|.+.|.+ ++.++|+|+|+||+||||||..++++. .....|+.++|+++++..+..+++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 78999999999998 688999999999999999999999985 358899999999999999999999999999987754
Q ss_pred CC-CCcCHHHHHHHHHHHhcCCcEEEEeCCCCChhhhhhhccCCCCCCCCCceEEEecCChhhhhhcCC-CcccccCCCC
Q 037625 218 SW-KSRSVEEKALDIFRSLREKRIVLLLDDIWERVDLTKVGVPLSGPKNTTSKVVFTTRFIGVCGSMEA-DRKFLVACLS 295 (467)
Q Consensus 218 ~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iiiTtR~~~~~~~~~~-~~~~~l~~L~ 295 (467)
.. ...+..+....+.+.|.++++||||||||+...|+.+...+ +....|++||||||+..++..+.. ...+++++|+
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~-~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPL-PSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH--------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred ccccccccccccccchhhhccccceeeeeeeccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence 43 56677889999999999999999999999999998887776 566779999999999988766544 6789999999
Q ss_pred HHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHHHHhccCCCHHHHHHHHHHHHhhhhcccCCccchhh
Q 037625 296 EKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIGRAMAYRKKAEQWRRAIEELRRSASKFACLGKEVYP 375 (467)
Q Consensus 296 ~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 375 (467)
.+|+++||.+.++.......+...+.+++|+++|+|+||||+++|++|+.+.+...|+.+++.+.....+..+...++..
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 238 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999876542233445678999999999999999999999977667788999999888776554445578999
Q ss_pred hHHhchhcCCchhhhHHHHHhhcCCCCcccchHHHHHHHHHhCCccCC
Q 037625 376 LLKFSYDSLQNDTIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFFGES 423 (467)
Q Consensus 376 ~l~~s~~~L~~~~~k~~~l~~a~fp~~~~i~~~~li~~w~aeg~~~~~ 423 (467)
++.+||+.||+ +.|.||++||+||+++.|+.+.++.+|+++|++...
T Consensus 239 ~l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 239 ALELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 99999999999 999999999999999999999999999999999863
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5.2e-41 Score=368.79 Aligned_cols=303 Identities=21% Similarity=0.284 Sum_probs=242.0
Q ss_pred CCccccchHHHHHHHHHHh--cCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEe---CCCC---------
Q 037625 134 ERTVVGLQSQLEQVWRCLA--EESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVV---SKDL--------- 199 (467)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~--~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~---~~~~--------- 199 (467)
.+.+||++.+++++..+|. .++.++|+|+||||+||||||+.+|+.. ...|+..+|+.. +...
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred cccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhccccccc
Confidence 4679999999999999885 3468899999999999999999999987 678888888742 1110
Q ss_pred --C-HHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCChhhhhhhccCCCCCCCCCceEEEecCC
Q 037625 200 --R-LEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWERVDLTKVGVPLSGPKNTTSKVVFTTRF 276 (467)
Q Consensus 200 --~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iiiTtR~ 276 (467)
+ ...+...++..+..... ..... ...+++.+.++|+||||||||+...|+.+.... .+.++||+||||||+
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~-~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~-~~~~~GsrIIiTTrd 333 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKD-IKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQT-QWFGSGSRIIVITKD 333 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCC-cccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhC-ccCCCCcEEEEEeCc
Confidence 0 12233444444321111 01111 245677889999999999999998898887655 556789999999999
Q ss_pred hhhhhhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHHHHhccCCCHHHHHHHH
Q 037625 277 IGVCGSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIGRAMAYRKKAEQWRRAI 356 (467)
Q Consensus 277 ~~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~~~~~~~~~~l 356 (467)
..++..++..+.|+++.|+.++|++||+.+++... .+++++.+++++|+++|+|+||||+++|++|++ ++..+|+.++
T Consensus 334 ~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l 411 (1153)
T PLN03210 334 KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDML 411 (1153)
T ss_pred HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHH
Confidence 99988777788999999999999999999999765 345678899999999999999999999999987 5789999999
Q ss_pred HHHHhhhhcccCCccchhhhHHhchhcCCchhhhHHHHHhhcCCCCcccchHHHHHHHHHhCCccCCCcccHHHHHHHHH
Q 037625 357 EELRRSASKFACLGKEVYPLLKFSYDSLQNDTIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFFGESDRSGAENQGYDIL 436 (467)
Q Consensus 357 ~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~k~~~l~~a~fp~~~~i~~~~li~~w~aeg~~~~~~~~~~~~~~~~~l 436 (467)
+.++... ++++..+|++||+.|+++..|.||+++|+|+.+..++ .+..|++.+.... +..+
T Consensus 412 ~~L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------~~~l 472 (1153)
T PLN03210 412 PRLRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------NIGL 472 (1153)
T ss_pred HHHHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------hhCh
Confidence 9987643 2479999999999998746899999999998887654 3677887765432 1238
Q ss_pred HHHHHccCccccCCCeEEecHHHHHHHHHhC
Q 037625 437 DTLVRACLLEELEDDEVKMHDVIRDMALWIT 467 (467)
Q Consensus 437 ~~L~~~~Ll~~~~~~~~~~H~lvr~~a~~i~ 467 (467)
+.|+++|||+.. .+.+.|||++|++|+.|+
T Consensus 473 ~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~ 502 (1153)
T PLN03210 473 KNLVDKSLIHVR-EDIVEMHSLLQEMGKEIV 502 (1153)
T ss_pred HHHHhcCCEEEc-CCeEEhhhHHHHHHHHHH
Confidence 999999999985 678999999999999873
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.74 E-value=3.3e-16 Score=171.40 Aligned_cols=294 Identities=14% Similarity=0.165 Sum_probs=184.3
Q ss_pred CCCCCccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCC-CCCHHHHHHHHH
Q 037625 131 RPTERTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK-DLRLEKIQEDIG 209 (467)
Q Consensus 131 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~ 209 (467)
|+.+..++-|+.-.+.+.+. ...+++.|+||+|.||||++.++.+.. . .++|+++.. ..++..++..++
T Consensus 10 p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~ 79 (903)
T PRK04841 10 PVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLI 79 (903)
T ss_pred CCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHH
Confidence 33446678887666655432 357899999999999999999988643 2 589999964 446677777777
Q ss_pred HHhcCCCCC-----------CCCcCHHHHHHHHHHHhc--CCcEEEEeCCCCCh--hhhhhhccCCCCCCCCCceEEEec
Q 037625 210 KKIGLVGDS-----------WKSRSVEEKALDIFRSLR--EKRIVLLLDDIWER--VDLTKVGVPLSGPKNTTSKVVFTT 274 (467)
Q Consensus 210 ~~l~~~~~~-----------~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iiiTt 274 (467)
..++..... ....+.......+...+. +.+++|||||+... .....+...+......+.++||||
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~s 159 (903)
T PRK04841 80 AALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLS 159 (903)
T ss_pred HHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEe
Confidence 777422111 011223334444544443 57899999999642 222222222214456678898999
Q ss_pred CChhhh---hhcCCCcccccC----CCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHHHHhccCC
Q 037625 275 RFIGVC---GSMEADRKFLVA----CLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIGRAMAYRK 347 (467)
Q Consensus 275 R~~~~~---~~~~~~~~~~l~----~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~~ 347 (467)
|..... .........++. +|+.+|+.+||....+..- + .+....|++.|+|+|+++..++..+....
T Consensus 160 R~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~---~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~ 233 (903)
T PRK04841 160 RNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI---E---AAESSRLCDDVEGWATALQLIALSARQNN 233 (903)
T ss_pred CCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC---C---HHHHHHHHHHhCChHHHHHHHHHHHhhCC
Confidence 974321 111112234455 9999999999988765322 1 35577999999999999999887775432
Q ss_pred CHHHHHHHHHHHHhhhhcccCCccchhhhH-HhchhcCCchhhhHHHHHhhcCCCCcccchHHHHHHHHHhCCccCCCcc
Q 037625 348 KAEQWRRAIEELRRSASKFACLGKEVYPLL-KFSYDSLQNDTIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFFGESDRS 426 (467)
Q Consensus 348 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l-~~s~~~L~~~~~k~~~l~~a~fp~~~~i~~~~li~~w~aeg~~~~~~~~ 426 (467)
... ......+... ....+...+ .-.++.||+ +.+.++..+|+++. + ... + +..+.+.
T Consensus 234 ~~~--~~~~~~~~~~------~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~~-~--~~~-l-----~~~l~~~---- 291 (903)
T PRK04841 234 SSL--HDSARRLAGI------NASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLRS-M--NDA-L-----IVRVTGE---- 291 (903)
T ss_pred Cch--hhhhHhhcCC------CchhHHHHHHHHHHhcCCH-HHHHHHHHhccccc-C--CHH-H-----HHHHcCC----
Confidence 210 0111111000 011344443 334789999 89999999999963 3 221 1 2222221
Q ss_pred cHHHHHHHHHHHHHHccCccc-c--CCCeEEecHHHHHHHHH
Q 037625 427 GAENQGYDILDTLVRACLLEE-L--EDDEVKMHDVIRDMALW 465 (467)
Q Consensus 427 ~~~~~~~~~l~~L~~~~Ll~~-~--~~~~~~~H~lvr~~a~~ 465 (467)
+.+...+++|.+.+++.. . +..+|++|++++++.+.
T Consensus 292 ---~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~ 330 (903)
T PRK04841 292 ---ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRH 330 (903)
T ss_pred ---CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHH
Confidence 233567999999999653 2 33589999999999864
No 5
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.67 E-value=5.3e-15 Score=148.82 Aligned_cols=292 Identities=18% Similarity=0.174 Sum_probs=195.5
Q ss_pred CCCccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCC-CCHHHHHHHHHHH
Q 037625 133 TERTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-LRLEKIQEDIGKK 211 (467)
Q Consensus 133 ~~~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~ 211 (467)
.+...+-|..-.+.|.+. .+.+.+.|..|+|.|||||+.+++... ..-..+.|+++... .++..+.+.++..
T Consensus 17 ~~~~~v~R~rL~~~L~~~---~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~a 89 (894)
T COG2909 17 RPDNYVVRPRLLDRLRRA---NDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIAA 89 (894)
T ss_pred CcccccccHHHHHHHhcC---CCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHHH
Confidence 345567776554444332 378999999999999999999998743 44457999998754 5788888888888
Q ss_pred hcCCCCC-----------CCCcCHHHHHHHHHHHhc--CCcEEEEeCCCC---ChhhhhhhccCCCCCCCCCceEEEecC
Q 037625 212 IGLVGDS-----------WKSRSVEEKALDIFRSLR--EKRIVLLLDDIW---ERVDLTKVGVPLSGPKNTTSKVVFTTR 275 (467)
Q Consensus 212 l~~~~~~-----------~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~---~~~~~~~~~~~l~~~~~~~s~iiiTtR 275 (467)
++...++ ....+...+.+.+..-+. .+++++||||.. +...-..+...+ ...+.+..+|+|||
T Consensus 90 l~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl-~~~P~~l~lvv~SR 168 (894)
T COG2909 90 LQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLL-KHAPENLTLVVTSR 168 (894)
T ss_pred HHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHH-HhCCCCeEEEEEec
Confidence 8743322 123345556666666664 368999999975 332222332233 56778999999999
Q ss_pred Chhhhhh---cCCCcccccC----CCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHHHHhccCCC
Q 037625 276 FIGVCGS---MEADRKFLVA----CLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIGRAMAYRKK 348 (467)
Q Consensus 276 ~~~~~~~---~~~~~~~~l~----~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~~~ 348 (467)
+..-+.. .-.+..+++. .|+.+|+.++|....+..- -+...+.+.+..+|.+-|+..++-.++.+.+
T Consensus 169 ~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al~L~aLa~~~~~~ 242 (894)
T COG2909 169 SRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAALQLIALALRNNTS 242 (894)
T ss_pred cCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHHHHHHHHccCCCc
Confidence 8754322 1122334433 4899999999988754322 1345789999999999999999988885455
Q ss_pred HHHHHHHHHHHHhhhhcccCCccchhhhHHhchhcCCchhhhHHHHHhhcCCCCcccchHHHHHHHHHhCCccCCCcccH
Q 037625 349 AEQWRRAIEELRRSASKFACLGKEVYPLLKFSYDSLQNDTIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFFGESDRSGA 428 (467)
Q Consensus 349 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~k~~~l~~a~fp~~~~i~~~~li~~w~aeg~~~~~~~~~~ 428 (467)
.+.....+.-..+..+ .-...-.++.||+ +.+.+++-+|+++.=. ..|... ...
T Consensus 243 ~~q~~~~LsG~~~~l~---------dYL~eeVld~Lp~-~l~~FLl~~svl~~f~----~eL~~~------------Ltg 296 (894)
T COG2909 243 AEQSLRGLSGAASHLS---------DYLVEEVLDRLPP-ELRDFLLQTSVLSRFN----DELCNA------------LTG 296 (894)
T ss_pred HHHHhhhccchHHHHH---------HHHHHHHHhcCCH-HHHHHHHHHHhHHHhh----HHHHHH------------Hhc
Confidence 4433322221111111 1234456789999 8999999999985411 122221 122
Q ss_pred HHHHHHHHHHHHHccCcccc---CCCeEEecHHHHHHHH
Q 037625 429 ENQGYDILDTLVRACLLEEL---EDDEVKMHDVIRDMAL 464 (467)
Q Consensus 429 ~~~~~~~l~~L~~~~Ll~~~---~~~~~~~H~lvr~~a~ 464 (467)
++.+...+++|.+++|+-.. +..+|+.|+++.||-+
T Consensus 297 ~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~ 335 (894)
T COG2909 297 EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLR 335 (894)
T ss_pred CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHH
Confidence 45566789999999997754 6789999999999965
No 6
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.60 E-value=5.2e-13 Score=131.98 Aligned_cols=298 Identities=15% Similarity=0.100 Sum_probs=177.9
Q ss_pred CCCccccchHHHHHHHHHHhc----CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHH
Q 037625 133 TERTVVGLQSQLEQVWRCLAE----ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDI 208 (467)
Q Consensus 133 ~~~~~vGr~~~~~~l~~~L~~----~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 208 (467)
.++.++||++++++|...+.+ ...+.+.|+|++|+|||++++.++++. ......-..+++++....+...++..+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l-~~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 346799999999999999853 344678999999999999999999987 222223456777777777888999999
Q ss_pred HHHhcCCCCCCCCcCHHHHHHHHHHHhc--CCcEEEEeCCCCChh------hhhhhccCCCCCCCCCceEEEecCChhhh
Q 037625 209 GKKIGLVGDSWKSRSVEEKALDIFRSLR--EKRIVLLLDDIWERV------DLTKVGVPLSGPKNTTSKVVFTTRFIGVC 280 (467)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~~~~~l~~~~~~~s~iiiTtR~~~~~ 280 (467)
+.++..........+..+....+.+.+. +++.+||||+++... .+..+...+....+.+..+|.++.+..+.
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchh
Confidence 9988652211123456677777777775 456899999997532 23333222211111133356666654332
Q ss_pred hhc-------CCCcccccCCCCHHHHHHHHHHHhCCC---CCCCChhHHHHHHHHHHHhCCCcHHHHHHHHHh--c--cC
Q 037625 281 GSM-------EADRKFLVACLSEKDAWELFREKVGEE---TLKSDHDIAELAQIVANECGGLPLALITIGRAM--A--YR 346 (467)
Q Consensus 281 ~~~-------~~~~~~~l~~L~~~e~~~lf~~~~~~~---~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l--~--~~ 346 (467)
... .....+.+++++.++..+++..++... ....+..++.+++......|..+.++..+-.+. + .+
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG 266 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 211 112467899999999999999876422 112222223333333333455677776654322 1 11
Q ss_pred ---CCHHHHHHHHHHHHhhhhcccCCccchhhhHHhchhcCCchhhhHHHHHhhcCCC--CcccchHHHHHH--HHHhCC
Q 037625 347 ---KKAEQWRRAIEELRRSASKFACLGKEVYPLLKFSYDSLQNDTIRSCFLYCCLYPE--DYGILKWDLIDC--WIGEGF 419 (467)
Q Consensus 347 ---~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~k~~~l~~a~fp~--~~~i~~~~li~~--w~aeg~ 419 (467)
-+.+.+..+++.... ....-.+..||. +.|..+..++...+ ...+....+... .+++.+
T Consensus 267 ~~~I~~~~v~~a~~~~~~-------------~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~ 332 (394)
T PRK00411 267 SRKVTEEDVRKAYEKSEI-------------VHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEEL 332 (394)
T ss_pred CCCcCHHHHHHHHHHHHH-------------HHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHc
Confidence 245666665555421 123345778998 66666555543321 123555554432 222211
Q ss_pred ccCCCcccHHHHHHHHHHHHHHccCcccc
Q 037625 420 FGESDRSGAENQGYDILDTLVRACLLEEL 448 (467)
Q Consensus 420 ~~~~~~~~~~~~~~~~l~~L~~~~Ll~~~ 448 (467)
- ..+.......+++..|...|||...
T Consensus 333 ~---~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 333 G---YEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred C---CCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 0 1112345667899999999999864
No 7
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.54 E-value=7.4e-12 Score=122.52 Aligned_cols=297 Identities=14% Similarity=0.160 Sum_probs=177.7
Q ss_pred CCccccchHHHHHHHHHHhc----CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCC---CCeEEEEEeCCCCCHHHHHH
Q 037625 134 ERTVVGLQSQLEQVWRCLAE----ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTN---FDCVIWVVVSKDLRLEKIQE 206 (467)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~~----~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~ 206 (467)
++.++||++++++|..++.. ...+.+.|+|++|+|||++++.+++........ .-..+|+++....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 45799999999999999864 345679999999999999999999876211111 12467788777777888999
Q ss_pred HHHHHhc---CCCCCCCCcCHHHHHHHHHHHhc--CCcEEEEeCCCCCh-----hhhhhhccCC--CCCCCCCceEEEec
Q 037625 207 DIGKKIG---LVGDSWKSRSVEEKALDIFRSLR--EKRIVLLLDDIWER-----VDLTKVGVPL--SGPKNTTSKVVFTT 274 (467)
Q Consensus 207 ~i~~~l~---~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~-----~~~~~~~~~l--~~~~~~~s~iiiTt 274 (467)
.++.++. ...+. ...+..+....+.+.+. +++++||||+++.. ..+..+.... ....+.+..+|.+|
T Consensus 94 ~i~~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 94 ELANQLRGSGEEVPT-TGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHhhcCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 9999883 22111 22344556666666663 56789999999754 1122222221 01111334455555
Q ss_pred CChhhhhhc-------CCCcccccCCCCHHHHHHHHHHHhCCC--CCCCChhHHHHHHHHHHHhCCCcHHHHHHHHH-h-
Q 037625 275 RFIGVCGSM-------EADRKFLVACLSEKDAWELFREKVGEE--TLKSDHDIAELAQIVANECGGLPLALITIGRA-M- 343 (467)
Q Consensus 275 R~~~~~~~~-------~~~~~~~l~~L~~~e~~~lf~~~~~~~--~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~-l- 343 (467)
........+ .....+.+++++.+|..+++..++... ....+++..+....++..+.|.|-.+..+... .
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 444321111 112467899999999999999887421 11123334445566777788988544333221 1
Q ss_pred -c--c---CCCHHHHHHHHHHHHhhhhcccCCccchhhhHHhchhcCCchhhhHHHHHhhcCC--CCcccchHHHHHHH-
Q 037625 344 -A--Y---RKKAEQWRRAIEELRRSASKFACLGKEVYPLLKFSYDSLQNDTIRSCFLYCCLYP--EDYGILKWDLIDCW- 414 (467)
Q Consensus 344 -~--~---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~k~~~l~~a~fp--~~~~i~~~~li~~w- 414 (467)
. . .-+.+..+.+.+.+.. ....-++..||. +.+.++..++..- .+..+....+...+
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~~~-------------~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~ 318 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKIEK-------------DRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVYK 318 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 1 1 1245555555444421 122345668888 6666555544221 33446666666533
Q ss_pred -HHhCCccCCCcccHHHHHHHHHHHHHHccCcccc
Q 037625 415 -IGEGFFGESDRSGAENQGYDILDTLVRACLLEEL 448 (467)
Q Consensus 415 -~aeg~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~~ 448 (467)
+.+. +. -.+.......+++..|...|||...
T Consensus 319 ~~~~~-~~--~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 319 EVCED-IG--VDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHh-cC--CCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 1221 11 1234467888999999999999975
No 8
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.50 E-value=6.5e-14 Score=128.03 Aligned_cols=196 Identities=19% Similarity=0.196 Sum_probs=105.5
Q ss_pred cccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHH--------
Q 037625 137 VVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDI-------- 208 (467)
Q Consensus 137 ~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i-------- 208 (467)
|+||++++++|.+++..+..+.+.|+|+.|+|||+|++.+.+.. ...-..++|+...+.... .....+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~---~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL---KEKGYKVVYIDFLEESNE-SSLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC---T--EECCCHHCCTTBSHH-HHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh---hhcCCcEEEEecccchhh-hHHHHHHHHHHHHH
Confidence 79999999999999988778899999999999999999999987 222223444444343322 222222
Q ss_pred --HHHhcCCCCC--------CCCcCHHHHHHHHHHHhc--CCcEEEEeCCCCChh--------hhhhhccCCCC-CCCCC
Q 037625 209 --GKKIGLVGDS--------WKSRSVEEKALDIFRSLR--EKRIVLLLDDIWERV--------DLTKVGVPLSG-PKNTT 267 (467)
Q Consensus 209 --~~~l~~~~~~--------~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~--------~~~~~~~~l~~-~~~~~ 267 (467)
...+....+. ............+.+.+. +++++||+||+.... ....+...+.. ....+
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 156 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN 156 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC
Confidence 1112111110 011222334444545543 345999999986433 11122222201 12344
Q ss_pred ceEEEecCChhhhhh--------cCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHH
Q 037625 268 SKVVFTTRFIGVCGS--------MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALIT 338 (467)
Q Consensus 268 s~iiiTtR~~~~~~~--------~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~ 338 (467)
..+|+++.+..+... .+....+.+++|+.+++++++...+... ... +.-.+..++|+..+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 455555555544322 2223458899999999999999976543 111 12246678999999999998865
No 9
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.47 E-value=2.4e-11 Score=113.59 Aligned_cols=182 Identities=13% Similarity=0.154 Sum_probs=115.4
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH
Q 037625 154 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFR 233 (467)
Q Consensus 154 ~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 233 (467)
...+++.|+|++|+|||||++.+++.. .. .. -..+|+ +....+..+++..++..++..... .+.......+..
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~-~~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~---~~~~~~~~~l~~ 113 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRL-DQ-ER-VVAAKL-VNTRVDAEDLLRMVAADFGLETEG---RDKAALLRELED 113 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CC-eEEeee-eCCCCCHHHHHHHHHHHcCCCCCC---CCHHHHHHHHHH
Confidence 345689999999999999999999987 21 11 122333 333456778899999888765322 222333333333
Q ss_pred H-----hcCCcEEEEeCCCCCh--hhhhhhccCCC--CCCCCCceEEEecCChhhhhhc----------CCCcccccCCC
Q 037625 234 S-----LREKRIVLLLDDIWER--VDLTKVGVPLS--GPKNTTSKVVFTTRFIGVCGSM----------EADRKFLVACL 294 (467)
Q Consensus 234 ~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~--~~~~~~s~iiiTtR~~~~~~~~----------~~~~~~~l~~L 294 (467)
. ..+++.+||+||++.. ..++.+..... ........|++|.... ....+ .....+.+++|
T Consensus 114 ~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l 192 (269)
T TIGR03015 114 FLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPL 192 (269)
T ss_pred HHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCC
Confidence 2 2578899999999863 34444432221 1122334556666533 21111 11335789999
Q ss_pred CHHHHHHHHHHHhCCCCCCC-ChhHHHHHHHHHHHhCCCcHHHHHHHHHh
Q 037625 295 SEKDAWELFREKVGEETLKS-DHDIAELAQIVANECGGLPLALITIGRAM 343 (467)
Q Consensus 295 ~~~e~~~lf~~~~~~~~~~~-~~~~~~~~~~I~~~~~G~Plai~~~~~~l 343 (467)
+.+|..+++...+....... ..-..+....|++.|+|+|..|+.++..+
T Consensus 193 ~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 193 DREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999999998775332111 11235788999999999999999998776
No 10
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.44 E-value=2.2e-12 Score=122.89 Aligned_cols=265 Identities=15% Similarity=0.109 Sum_probs=146.6
Q ss_pred CccccchHHHHHHHHHHhc-----CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 037625 135 RTVVGLQSQLEQVWRCLAE-----ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIG 209 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~-----~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 209 (467)
..|+|++..++.|..++.. ...+.+.++|++|+|||+||+.+++.. ...+ ..+..+.......+ ...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~l-~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM---GVNL---KITSGPALEKPGDL-AAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCE---EEeccchhcCchhH-HHHH
Confidence 4689999999999988862 345678999999999999999999987 2222 11221111111222 2222
Q ss_pred HHhcCCC----CCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCChhhhhhhccCCCCCCCCCceEEEecCChhhhhhc--
Q 037625 210 KKIGLVG----DSWKSRSVEEKALDIFRSLREKRIVLLLDDIWERVDLTKVGVPLSGPKNTTSKVVFTTRFIGVCGSM-- 283 (467)
Q Consensus 210 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iiiTtR~~~~~~~~-- 283 (467)
..++... ++....+ ......++..+.+.+..+|+++..+...+.. ...+.+-|..||+...+...+
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL-------DLPPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee-------cCCCeEEEEecCCccccCHHHHh
Confidence 2222110 0000011 1122334445555555566665433322221 122345556677765442211
Q ss_pred CCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHHHHhcc------C--CCHHHHHHH
Q 037625 284 EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIGRAMAY------R--KKAEQWRRA 355 (467)
Q Consensus 284 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~------~--~~~~~~~~~ 355 (467)
.....+.+++++.++..+++.+.+.......+ .+....|++.|+|.|-.+..++..+.. . -+.+..+
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~---~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~-- 223 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVEIE---PEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIAL-- 223 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHH--
Confidence 12346789999999999999988765432222 356788999999999776555543310 0 0111111
Q ss_pred HHHHHhhhhcccCCccchhhhHHhchhcCCchhhhHHHH-HhhcCCCCcccchHHHHHHHHHhCCccCCCcccHHHHHHH
Q 037625 356 IEELRRSASKFACLGKEVYPLLKFSYDSLQNDTIRSCFL-YCCLYPEDYGILKWDLIDCWIGEGFFGESDRSGAENQGYD 434 (467)
Q Consensus 356 l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~k~~~l-~~a~fp~~~~i~~~~li~~w~aeg~~~~~~~~~~~~~~~~ 434 (467)
.....+...|..+++ ..+..+. .+..+..+ ++....+.... | . ....++.
T Consensus 224 ----------------~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~l---g---~-----~~~~~~~ 274 (305)
T TIGR00635 224 ----------------KALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAAL---G---E-----DADTIED 274 (305)
T ss_pred ----------------HHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHHh---C---C-----CcchHHH
Confidence 112224556777887 5555554 44556443 44443333221 1 1 1345566
Q ss_pred HHH-HHHHccCcccc
Q 037625 435 ILD-TLVRACLLEEL 448 (467)
Q Consensus 435 ~l~-~L~~~~Ll~~~ 448 (467)
.++ .|++++||...
T Consensus 275 ~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 275 VYEPYLLQIGFLQRT 289 (305)
T ss_pred hhhHHHHHcCCcccC
Confidence 688 69999999865
No 11
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.42 E-value=3e-12 Score=122.82 Aligned_cols=274 Identities=14% Similarity=0.077 Sum_probs=145.1
Q ss_pred CCccccchHHHHHHHHHHhc-----CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHH
Q 037625 134 ERTVVGLQSQLEQVWRCLAE-----ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDI 208 (467)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~~-----~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 208 (467)
-..|+|++..++.+..++.. ...+.+.|+|++|+|||+||+.+++.. ...+ .++..+.. .....+..+
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~---~~~~~~~~-~~~~~l~~~ 96 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM---GVNI---RITSGPAL-EKPGDLAAI 96 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh---CCCe---EEEecccc-cChHHHHHH
Confidence 36799999999998877752 345678999999999999999999987 2221 11221111 111112222
Q ss_pred HHHhcCCC----CCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCChhhhhhhccCCCCCCCCCceEEEecCChhhhhhc-
Q 037625 209 GKKIGLVG----DSWKSRSVEEKALDIFRSLREKRIVLLLDDIWERVDLTKVGVPLSGPKNTTSKVVFTTRFIGVCGSM- 283 (467)
Q Consensus 209 ~~~l~~~~----~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iiiTtR~~~~~~~~- 283 (467)
+..++... ++....+ ......++..+.+.+..+++|+..+..... . ...+.+-|..||+...+...+
T Consensus 97 l~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~---~----~l~~~~li~at~~~~~l~~~L~ 168 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIR---L----DLPPFTLIGATTRAGLLTSPLR 168 (328)
T ss_pred HHhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCcccccee---e----cCCCceEEeecCCcccCCHHHH
Confidence 22221100 0000000 011122333334444444444432221111 0 112234555676654432211
Q ss_pred -CCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHHHHhccCCCHHHHHHHHHHHHhh
Q 037625 284 -EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIGRAMAYRKKAEQWRRAIEELRRS 362 (467)
Q Consensus 284 -~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~~~~~~~~~~l~~l~~~ 362 (467)
.....+++++++.++..+++.+.+.......+ .+.+..|++.|+|.|-.+..+...+. .|.... ...
T Consensus 169 sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~---~~~ 236 (328)
T PRK00080 169 DRFGIVQRLEFYTVEELEKIVKRSARILGVEID---EEGALEIARRSRGTPRIANRLLRRVR------DFAQVK---GDG 236 (328)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc---CCC
Confidence 12356889999999999999998776543333 36688999999999976665554332 111100 000
Q ss_pred hhcccCCccchhhhHHhchhcCCchhhhHHHH-HhhcCCCCcccchHHHHHHHHHhCCccCCCcccHHHHHHHHHH-HHH
Q 037625 363 ASKFACLGKEVYPLLKFSYDSLQNDTIRSCFL-YCCLYPEDYGILKWDLIDCWIGEGFFGESDRSGAENQGYDILD-TLV 440 (467)
Q Consensus 363 ~~~~~~~~~~~~~~l~~s~~~L~~~~~k~~~l-~~a~fp~~~~i~~~~li~~w~aeg~~~~~~~~~~~~~~~~~l~-~L~ 440 (467)
...... -......+...+..|++ ..+..+. .+..|+.+ ++..+.+.... .. ....+++.++ .|+
T Consensus 237 ~I~~~~-v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g~-----~~~~~~~~~e~~Li 302 (328)
T PRK00080 237 VITKEI-ADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL------GE-----ERDTIEDVYEPYLI 302 (328)
T ss_pred CCCHHH-HHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH------CC-----CcchHHHHhhHHHH
Confidence 000000 01223345566677877 4555553 66667654 45555443322 21 1345555677 899
Q ss_pred HccCcccc
Q 037625 441 RACLLEEL 448 (467)
Q Consensus 441 ~~~Ll~~~ 448 (467)
+.+||+..
T Consensus 303 ~~~li~~~ 310 (328)
T PRK00080 303 QQGFIQRT 310 (328)
T ss_pred HcCCcccC
Confidence 99999865
No 12
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.36 E-value=2.3e-11 Score=129.18 Aligned_cols=306 Identities=17% Similarity=0.229 Sum_probs=182.7
Q ss_pred cccchHHHHHHHHHHhc---CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHH---HHHHHHHH
Q 037625 137 VVGLQSQLEQVWRCLAE---ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE---KIQEDIGK 210 (467)
Q Consensus 137 ~vGr~~~~~~l~~~L~~---~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~---~~~~~i~~ 210 (467)
++||+.+++.|...+.+ +...++.+.|.+|+|||+|+++|.....+..+.|-...+-....+.... +.++++..
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 69999999999998874 5667999999999999999999999884332333333333333333322 23333333
Q ss_pred Hh-------------------cCCCCC--------------------CCCcCHHHHHH-----HHHHHh-cCCcEEEEeC
Q 037625 211 KI-------------------GLVGDS--------------------WKSRSVEEKAL-----DIFRSL-REKRIVLLLD 245 (467)
Q Consensus 211 ~l-------------------~~~~~~--------------------~~~~~~~~~~~-----~l~~~l-~~k~~LlVlD 245 (467)
++ +..+.. ..+........ .+.... +.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 32 111000 00111111111 122222 4569999999
Q ss_pred CC-CC-hhhhhhhccCCCCC-----CCCCceEEEecCCh--hhhhhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCCh
Q 037625 246 DI-WE-RVDLTKVGVPLSGP-----KNTTSKVVFTTRFI--GVCGSMEADRKFLVACLSEKDAWELFREKVGEETLKSDH 316 (467)
Q Consensus 246 dv-~~-~~~~~~~~~~l~~~-----~~~~s~iiiTtR~~--~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~ 316 (467)
|+ |- ...+.-+....... ..+..-.+.|.+.. .+.........+.|.||+..+...+....++.....
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~--- 238 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL--- 238 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc---
Confidence 99 53 22222221111000 01122222233322 111222334678999999999999999998764322
Q ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHhccC------CCHHHHHHHHHHHHhhhhcccCCccchhhhHHhchhcCCchhhh
Q 037625 317 DIAELAQIVANECGGLPLALITIGRAMAYR------KKAEQWRRAIEELRRSASKFACLGKEVYPLLKFSYDSLQNDTIR 390 (467)
Q Consensus 317 ~~~~~~~~I~~~~~G~Plai~~~~~~l~~~------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~k 390 (467)
..+....|+++..|+|+.+..+...+..+ .+...|..-...+... ... +.+...+..-.+.||. ..+
T Consensus 239 -~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~----~~~-~~vv~~l~~rl~kL~~-~t~ 311 (849)
T COG3899 239 -PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGIL----ATT-DAVVEFLAARLQKLPG-TTR 311 (849)
T ss_pred -cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCc----hhh-HHHHHHHHHHHhcCCH-HHH
Confidence 24678899999999999999999998774 3445555433232221 112 2356678899999999 899
Q ss_pred HHHHHhhcCCCCcccchHHHHHHHHHhCCccCCCcccHHHHHHHHHHHHHHccCcccc-------CCCe--E-EecHHHH
Q 037625 391 SCFLYCCLYPEDYGILKWDLIDCWIGEGFFGESDRSGAENQGYDILDTLVRACLLEEL-------EDDE--V-KMHDVIR 460 (467)
Q Consensus 391 ~~~l~~a~fp~~~~i~~~~li~~w~aeg~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~~-------~~~~--~-~~H~lvr 460 (467)
..+...|++...|. ...|...+ + ......+...++.|....++-.+ .... | ..|++|+
T Consensus 312 ~Vl~~AA~iG~~F~--l~~La~l~--~--------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vq 379 (849)
T COG3899 312 EVLKAAACIGNRFD--LDTLAALA--E--------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQ 379 (849)
T ss_pred HHHHHHHHhCccCC--HHHHHHHH--h--------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHH
Confidence 99999999987655 44444444 1 13456667777777776666421 1222 2 5599999
Q ss_pred HHHH
Q 037625 461 DMAL 464 (467)
Q Consensus 461 ~~a~ 464 (467)
+.|-
T Consensus 380 qaaY 383 (849)
T COG3899 380 QAAY 383 (849)
T ss_pred HHHh
Confidence 9873
No 13
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.27 E-value=1.6e-10 Score=107.81 Aligned_cols=169 Identities=21% Similarity=0.199 Sum_probs=107.7
Q ss_pred CccccchHHH---HHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 037625 135 RTVVGLQSQL---EQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKK 211 (467)
Q Consensus 135 ~~~vGr~~~~---~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 211 (467)
+++||.+.-+ .-|.+.+..+......+|||+|+||||||+.++... ...| ..++...+-
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f-----~~~sAv~~g---------- 85 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAF-----EALSAVTSG---------- 85 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCce-----EEecccccc----------
Confidence 4566665544 345566667888889999999999999999999976 4444 222222211
Q ss_pred hcCCCCCCCCcCHHHHHHHHH-HHhcCCcEEEEeCCCC--ChhhhhhhccCCCCCCCCCceEEE--ecCChhh---hhhc
Q 037625 212 IGLVGDSWKSRSVEEKALDIF-RSLREKRIVLLLDDIW--ERVDLTKVGVPLSGPKNTTSKVVF--TTRFIGV---CGSM 283 (467)
Q Consensus 212 l~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~--~~~~~~~~~~~l~~~~~~~s~iii--TtR~~~~---~~~~ 283 (467)
..+....++.-+ ....+++.+|++|+|. +..+.+.+. +....|..|+| ||.|+.. ....
T Consensus 86 ---------vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL----p~vE~G~iilIGATTENPsF~ln~ALl 152 (436)
T COG2256 86 ---------VKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALL----PHVENGTIILIGATTENPSFELNPALL 152 (436)
T ss_pred ---------HHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhh----hhhcCCeEEEEeccCCCCCeeecHHHh
Confidence 112222222222 2234789999999996 334444432 45677887777 7887755 2334
Q ss_pred CCCcccccCCCCHHHHHHHHHHHhCCCC--CC-CCh-hHHHHHHHHHHHhCCCcH
Q 037625 284 EADRKFLVACLSEKDAWELFREKVGEET--LK-SDH-DIAELAQIVANECGGLPL 334 (467)
Q Consensus 284 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~--~~-~~~-~~~~~~~~I~~~~~G~Pl 334 (467)
+...++.+++|+.++..+++.+.+.... .. ... --++....++..++|---
T Consensus 153 SR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 153 SRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred hhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 5567899999999999999998443221 11 001 113567788999998654
No 14
>PF05729 NACHT: NACHT domain
Probab=99.26 E-value=4.4e-11 Score=103.04 Aligned_cols=143 Identities=19% Similarity=0.245 Sum_probs=90.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCCCC----CCeEEEEEeCCCCCHH---HHHHHHHHHhcCCCCCCCCcCHHHHHH
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKFLESPTN----FDCVIWVVVSKDLRLE---KIQEDIGKKIGLVGDSWKSRSVEEKAL 229 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~ 229 (467)
+++.|+|.+|+||||+++.++..+.. ... +...+|.+.+...... .+...+..+..... .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~--- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAE-EEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-----APIEE--- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHh-cCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-----hhhHH---
Confidence 57899999999999999999988832 222 4567777766544332 33333433332111 11111
Q ss_pred HHHHHh-cCCcEEEEeCCCCChhh---------hhh-hccCCCCCCCCCceEEEecCChhh---hhhcCCCcccccCCCC
Q 037625 230 DIFRSL-REKRIVLLLDDIWERVD---------LTK-VGVPLSGPKNTTSKVVFTTRFIGV---CGSMEADRKFLVACLS 295 (467)
Q Consensus 230 ~l~~~l-~~k~~LlVlDdv~~~~~---------~~~-~~~~l~~~~~~~s~iiiTtR~~~~---~~~~~~~~~~~l~~L~ 295 (467)
.+...+ ..++++||||++++... +.. +...+.....++++++||+|.... .........+.+.+|+
T Consensus 72 ~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 72 LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 222222 56899999999974321 222 222231223578999999998766 3333444678999999
Q ss_pred HHHHHHHHHHHhC
Q 037625 296 EKDAWELFREKVG 308 (467)
Q Consensus 296 ~~e~~~lf~~~~~ 308 (467)
+++..+++.+++.
T Consensus 152 ~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 152 EEDIKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988763
No 15
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.17 E-value=7.1e-09 Score=106.23 Aligned_cols=297 Identities=16% Similarity=0.129 Sum_probs=164.0
Q ss_pred CCccccchHHHHHHHHHHhc----C-CCcEEEEEccCCCcHHHHHHHHHhcccCC--CCC-C-CeEEEEEeCCCCCHHHH
Q 037625 134 ERTVVGLQSQLEQVWRCLAE----E-SAGIIGLYGMGGVGKTTLLTHINNKFLES--PTN-F-DCVIWVVVSKDLRLEKI 204 (467)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~~----~-~~~~i~I~G~~GiGKTtLa~~v~~~~~~~--~~~-f-~~~~wv~~~~~~~~~~~ 204 (467)
++.+.||+.++++|...|.. . ...++.|+|++|+|||+.++.|.+.+... ... . -.++++++....+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 46789999999999998863 2 23467899999999999999998876221 111 1 23677877777788889
Q ss_pred HHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhc---CCcEEEEeCCCCChh--hhhhhccCCCCCCCCCceEEE--ecCCh
Q 037625 205 QEDIGKKIGLVGDSWKSRSVEEKALDIFRSLR---EKRIVLLLDDIWERV--DLTKVGVPLSGPKNTTSKVVF--TTRFI 277 (467)
Q Consensus 205 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~s~iii--TtR~~ 277 (467)
+..|..++....+. ......+....+...+. ....+||||+++... .-+.+...+......+++|++ +|.+.
T Consensus 834 YqvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 834 YQVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 99999888433221 23334455556665552 234699999997421 111121111111223445443 44322
Q ss_pred hhhh----hc---CCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHH-HHHHHHHHhCCCcHHHHHHHHHhccC---
Q 037625 278 GVCG----SM---EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAE-LAQIVANECGGLPLALITIGRAMAYR--- 346 (467)
Q Consensus 278 ~~~~----~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~-~~~~I~~~~~G~Plai~~~~~~l~~~--- 346 (467)
.... .+ .....+...|++.++..+++..++.......+++..+ +|+.++...|-.-.||.++-.+....
T Consensus 913 DLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikegs 992 (1164)
T PTZ00112 913 DLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQ 992 (1164)
T ss_pred hcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCCC
Confidence 2111 11 1123467899999999999999886432122333333 33333333334456666555444221
Q ss_pred -CCHHHHHHHHHHHHhhhhcccCCccchhhhHHhchhcCCchhhhHHHHHhhcCCC---CcccchHHHHHHH--HHh--C
Q 037625 347 -KKAEQWRRAIEELRRSASKFACLGKEVYPLLKFSYDSLQNDTIRSCFLYCCLYPE---DYGILKWDLIDCW--IGE--G 418 (467)
Q Consensus 347 -~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~k~~~l~~a~fp~---~~~i~~~~li~~w--~ae--g 418 (467)
-+.+....+.+.+.. ..+.-....||. +.|..|..+...-. ...++...+.... +++ |
T Consensus 993 kVT~eHVrkAleeiE~-------------srI~e~IktLPl-HqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~G 1058 (1164)
T PTZ00112 993 KIVPRDITEATNQLFD-------------SPLTNAINYLPW-PFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSG 1058 (1164)
T ss_pred ccCHHHHHHHHHHHHh-------------hhHHHHHHcCCH-HHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhh
Confidence 123333333333321 123334467888 66665543333211 2245555544332 233 1
Q ss_pred -CccCCCcccHHHHHHHHHHHHHHccCcccc
Q 037625 419 -FFGESDRSGAENQGYDILDTLVRACLLEEL 448 (467)
Q Consensus 419 -~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~~ 448 (467)
.+.. ..... ....++.+|...|+|...
T Consensus 1059 k~iGv--~plTq-RV~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1059 KYIGM--CSNNE-LFKIMLDKLVKMGILLIR 1086 (1164)
T ss_pred hhcCC--CCcHH-HHHHHHHHHHhcCeEEec
Confidence 1111 12223 778889999999998753
No 16
>PRK06893 DNA replication initiation factor; Validated
Probab=99.16 E-value=4.2e-10 Score=101.99 Aligned_cols=153 Identities=13% Similarity=0.192 Sum_probs=94.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRS 234 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 234 (467)
..+.+.|+|++|+|||+|++.+++... .....+.|++...... .. ..+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~y~~~~~~~~---~~-----------------------~~~~~~ 88 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL---LNQRTAIYIPLSKSQY---FS-----------------------PAVLEN 88 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEeeHHHhhh---hh-----------------------HHHHhh
Confidence 446789999999999999999999872 2233456766532100 00 011122
Q ss_pred hcCCcEEEEeCCCCCh---hhhh-hhccCCCCCCCCCceEE-EecCC---------hhhhhhcCCCcccccCCCCHHHHH
Q 037625 235 LREKRIVLLLDDIWER---VDLT-KVGVPLSGPKNTTSKVV-FTTRF---------IGVCGSMEADRKFLVACLSEKDAW 300 (467)
Q Consensus 235 l~~k~~LlVlDdv~~~---~~~~-~~~~~l~~~~~~~s~ii-iTtR~---------~~~~~~~~~~~~~~l~~L~~~e~~ 300 (467)
+. +.-+|+|||+|.. ..|+ .+...+......+..+| +|++. +.+...+.....+++++++.++.+
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKI 167 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHH
Confidence 22 2358999999852 3343 22222211223355554 45543 244444455678899999999999
Q ss_pred HHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHH
Q 037625 301 ELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIG 340 (467)
Q Consensus 301 ~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 340 (467)
+++.+.+.......+ ++....|++.+.|..-.+..+-
T Consensus 168 ~iL~~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 168 IVLQRNAYQRGIELS---DEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHH
Confidence 999988865443333 3677788888888776655443
No 17
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.12 E-value=3.9e-09 Score=104.43 Aligned_cols=177 Identities=18% Similarity=0.154 Sum_probs=107.4
Q ss_pred CccccchHHHHH---HHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 037625 135 RTVVGLQSQLEQ---VWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKK 211 (467)
Q Consensus 135 ~~~vGr~~~~~~---l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 211 (467)
+.++|++..+.. |..++..+..+.+.|+|++|+||||||+.+++.. ...| +.++.......-.+.+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~-----~~l~a~~~~~~~ir~i--- 80 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAPF-----EALSAVTSGVKDLREV--- 80 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCCE-----EEEecccccHHHHHHH---
Confidence 568999888666 8888877777789999999999999999999876 2222 2222211111111111
Q ss_pred hcCCCCCCCCcCHHHHHHHHHHH-hcCCcEEEEeCCCCCh--hhhhhhccCCCCCCCCCceEEE--ecCChhh---hhhc
Q 037625 212 IGLVGDSWKSRSVEEKALDIFRS-LREKRIVLLLDDIWER--VDLTKVGVPLSGPKNTTSKVVF--TTRFIGV---CGSM 283 (467)
Q Consensus 212 l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iii--TtR~~~~---~~~~ 283 (467)
....... ..+++.+|++|+++.. ...+.+...+ ..+..++| ||.+... ....
T Consensus 81 ----------------i~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~l----e~~~iilI~att~n~~~~l~~aL~ 140 (413)
T PRK13342 81 ----------------IEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHV----EDGTITLIGATTENPSFEVNPALL 140 (413)
T ss_pred ----------------HHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHh----hcCcEEEEEeCCCChhhhccHHHh
Confidence 1111111 1457889999999853 3344443333 22444444 4444322 1222
Q ss_pred CCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHHHH
Q 037625 284 EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIGRA 342 (467)
Q Consensus 284 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~ 342 (467)
+....+.+.+++.++...++.+.+.........-..+....|++.|+|.|..+..+...
T Consensus 141 SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 141 SRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred ccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 33467889999999999999987643210000112456778999999999766554433
No 18
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.12 E-value=4.6e-09 Score=106.89 Aligned_cols=197 Identities=17% Similarity=0.149 Sum_probs=113.9
Q ss_pred CccccchHHHHHHHHHHhcCCC-cEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 037625 135 RTVVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIG 213 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~-~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 213 (467)
.+++|.+..++.|.+++..++. +.+.++|+.|+||||+|+.+.+.+. ....++. ...........|...-.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn-Ce~~~~~-------~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN-CETGVTS-------QPCGVCRACREIDEGRF 87 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CccCCCC-------CCCcccHHHHHHhcCCC
Confidence 5689999999999999987764 4568999999999999999988772 1111100 00011111111110000
Q ss_pred C---CCCCCCCcCHHHHHHHHHHH----hcCCcEEEEeCCCCCh--hhhhhhccCCCCCCCCCceEEEecCChhh-h-hh
Q 037625 214 L---VGDSWKSRSVEEKALDIFRS----LREKRIVLLLDDIWER--VDLTKVGVPLSGPKNTTSKVVFTTRFIGV-C-GS 282 (467)
Q Consensus 214 ~---~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iiiTtR~~~~-~-~~ 282 (467)
. ..+.......++....+... ..++.-++|||+++.. ..++.+...+ -....++++|+||++..- . ..
T Consensus 88 ~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtL-EEPP~~v~FILaTtd~~KIp~TI 166 (830)
T PRK07003 88 VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTL-EEPPPHVKFILATTDPQKIPVTV 166 (830)
T ss_pred ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHH-HhcCCCeEEEEEECChhhccchh
Confidence 0 00000011112211111111 1245568999999743 3455555444 233457777777765433 2 22
Q ss_pred cCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCc-HHHHHHHHHh
Q 037625 283 MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLP-LALITIGRAM 343 (467)
Q Consensus 283 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P-lai~~~~~~l 343 (467)
.+....+++.+++.++..+.+.+.+.......+ .+....|++.++|.. -+++.+-..+
T Consensus 167 rSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id---~eAL~lIA~~A~GsmRdALsLLdQAi 225 (830)
T PRK07003 167 LSRCLQFNLKQMPAGHIVSHLERILGEERIAFE---PQALRLLARAAQGSMRDALSLTDQAI 225 (830)
T ss_pred hhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 233467899999999999999998765443222 366788999998865 4666544433
No 19
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.11 E-value=1e-09 Score=99.77 Aligned_cols=174 Identities=13% Similarity=0.137 Sum_probs=104.4
Q ss_pred Ccccc--chHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 037625 135 RTVVG--LQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKI 212 (467)
Q Consensus 135 ~~~vG--r~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 212 (467)
+.|++ ....++.+.+++.....+.+.|+|++|+|||+||+.+++.. .......+|++++.-.. ..
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~---~~~~~~~~~i~~~~~~~------~~---- 81 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAA---EERGKSAIYLPLAELAQ------AD---- 81 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHH---HhcCCcEEEEeHHHHHH------hH----
Confidence 34552 44567777777665667789999999999999999999876 22233455665432211 00
Q ss_pred cCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCChh---h-hhhhccCCCCCCCCCceEEEecCChh---------h
Q 037625 213 GLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWERV---D-LTKVGVPLSGPKNTTSKVVFTTRFIG---------V 279 (467)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~-~~~~~~~l~~~~~~~s~iiiTtR~~~---------~ 279 (467)
..+...+.+ .-+|||||++... . .+.+...+......+..+|+||+... +
T Consensus 82 ----------------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L 144 (226)
T TIGR03420 82 ----------------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDL 144 (226)
T ss_pred ----------------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHH
Confidence 011122222 2489999997432 2 22333322111223457888887432 1
Q ss_pred hhhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHHH
Q 037625 280 CGSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIGR 341 (467)
Q Consensus 280 ~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~ 341 (467)
...+.....+++.+++.++...++.+.+.......+ .+....+.+.++|+|..+..+..
T Consensus 145 ~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 145 RTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLP---DEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHH
Confidence 112222457889999999999999876543322222 35667888889999887766543
No 20
>PRK04195 replication factor C large subunit; Provisional
Probab=99.05 E-value=1.5e-08 Score=102.33 Aligned_cols=242 Identities=19% Similarity=0.194 Sum_probs=138.0
Q ss_pred CccccchHHHHHHHHHHhc---C-CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 037625 135 RTVVGLQSQLEQVWRCLAE---E-SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGK 210 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~---~-~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 210 (467)
..++|.+..++.|.+|+.. + ..+.+.|+|++|+||||+|+.+++.. . ++ .+.++.+...+.. ....++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el---~--~~-~ielnasd~r~~~-~i~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY---G--WE-VIELNASDQRTAD-VIERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc---C--CC-EEEEcccccccHH-HHHHHHH
Confidence 5689999999999999864 2 26789999999999999999999987 2 22 2333444433222 2222222
Q ss_pred HhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh------hhhhhhccCCCCCCCCCceEEEecCChh-hh--h
Q 037625 211 KIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER------VDLTKVGVPLSGPKNTTSKVVFTTRFIG-VC--G 281 (467)
Q Consensus 211 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------~~~~~~~~~l~~~~~~~s~iiiTtR~~~-~~--~ 281 (467)
...... .....++-+||||+++.. .....+...+ . ..+..||+|+.+.. .. .
T Consensus 87 ~~~~~~----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l-~--~~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 87 EAATSG----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELI-K--KAKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HhhccC----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHH-H--cCCCCEEEeccCccccchhh
Confidence 221100 001136789999999753 2234443333 1 23445666664332 11 1
Q ss_pred hcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHHHHhccCC---CHHHHHHHHHH
Q 037625 282 SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIGRAMAYRK---KAEQWRRAIEE 358 (467)
Q Consensus 282 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~~---~~~~~~~~l~~ 358 (467)
.......+.+.+++.++....+.+.+.......+ .+....|++.++|..-.+......+.... +.+.....
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~--- 221 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTL--- 221 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHh---
Confidence 2233457889999999999999887765443333 36778999999998766554444443321 22222211
Q ss_pred HHhhhhcccCCccchhhhHHhchhcCCchhhhHHHHHhhcCCCCcccchHHHHHHHHHhCCccC
Q 037625 359 LRRSASKFACLGKEVYPLLKFSYDSLQNDTIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFFGE 422 (467)
Q Consensus 359 l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~k~~~l~~a~fp~~~~i~~~~li~~w~aeg~~~~ 422 (467)
.. .....+++.++...+..-..+.....+..+ .++. ..+..|+.+.+...
T Consensus 222 -~~-----~d~~~~if~~l~~i~~~k~~~~a~~~~~~~-------~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 222 -GR-----RDREESIFDALDAVFKARNADQALEASYDV-------DEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred -hc-----CCCCCCHHHHHHHHHCCCCHHHHHHHHHcc-------cCCH-HHHHHHHHhccccc
Confidence 10 112235666666555532221333322221 1222 34778999998765
No 21
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.04 E-value=1.9e-08 Score=92.51 Aligned_cols=173 Identities=16% Similarity=0.156 Sum_probs=110.8
Q ss_pred CccccchHHH---HHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 037625 135 RTVVGLQSQL---EQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKK 211 (467)
Q Consensus 135 ~~~vGr~~~~---~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 211 (467)
.++||.+..+ -.|.+++.++..+.+.+||++|+||||||+.+...- +.+- ..||..|....-..-.+.|.++
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts---k~~S--yrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS---KKHS--YRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc---CCCc--eEEEEEeccccchHHHHHHHHH
Confidence 4567776554 235555667888999999999999999999999876 2221 4567666544323333333333
Q ss_pred hcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEE--ecCChhh---hhhcC
Q 037625 212 IGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVF--TTRFIGV---CGSME 284 (467)
Q Consensus 212 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iii--TtR~~~~---~~~~~ 284 (467)
.. -...+.++|.+|.+|+|.. ..+.+.| .+...+|..++| ||.++.. ...+.
T Consensus 213 aq-----------------~~~~l~krkTilFiDEiHRFNksQQD~f----LP~VE~G~I~lIGATTENPSFqln~aLlS 271 (554)
T KOG2028|consen 213 AQ-----------------NEKSLTKRKTILFIDEIHRFNKSQQDTF----LPHVENGDITLIGATTENPSFQLNAALLS 271 (554)
T ss_pred HH-----------------HHHhhhcceeEEEeHHhhhhhhhhhhcc----cceeccCceEEEecccCCCccchhHHHHh
Confidence 21 1123457899999999963 3333333 256677887776 8887765 23345
Q ss_pred CCcccccCCCCHHHHHHHHHHHhC---CCCC---C-CC-h--hHHHHHHHHHHHhCCCc
Q 037625 285 ADRKFLVACLSEKDAWELFREKVG---EETL---K-SD-H--DIAELAQIVANECGGLP 333 (467)
Q Consensus 285 ~~~~~~l~~L~~~e~~~lf~~~~~---~~~~---~-~~-~--~~~~~~~~I~~~~~G~P 333 (467)
...++.|++|+.++...++.+... .... . +. . -...+..-++..|+|-.
T Consensus 272 RC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 272 RCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred ccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 567899999999999999988432 1110 1 11 1 12346677788888864
No 22
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=4.3e-08 Score=98.68 Aligned_cols=194 Identities=16% Similarity=0.152 Sum_probs=110.2
Q ss_pred CccccchHHHHHHHHHHhcCCCc-EEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHH--
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAG-IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKK-- 211 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~-~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-- 211 (467)
.++||.+..++.|.+++..++.. .+.++|+.|+||||+|+.+.+.+. .... +..--+. +...........|...
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLn-C~~p-~~~~g~~-~~PCG~C~sC~~I~aG~h 92 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLN-CTGA-DGEGGIT-AQPCGQCRACTEIDAGRF 92 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc-CCCc-cccccCC-CCCCcccHHHHHHHcCCC
Confidence 56899999999999999887654 468999999999999999998872 1100 0000000 0000001111111100
Q ss_pred ---hcCCCCCCCCcCHHHHHHHHHHH----hcCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEE-EecCChhhh-
Q 037625 212 ---IGLVGDSWKSRSVEEKALDIFRS----LREKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVV-FTTRFIGVC- 280 (467)
Q Consensus 212 ---l~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~ii-iTtR~~~~~- 280 (467)
+.+... .....++..+.+... ..++.-++|||+++. ....+.+...+ -....++++| +||....+.
T Consensus 93 pDviEIdAa--s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTL-EEPP~~v~FILaTtep~kLlp 169 (700)
T PRK12323 93 VDYIEMDAA--SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTL-EEPPEHVKFILATTDPQKIPV 169 (700)
T ss_pred CcceEeccc--ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhh-ccCCCCceEEEEeCChHhhhh
Confidence 000000 011122222211111 135667999999974 34556665555 2333455555 455544443
Q ss_pred hhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHH
Q 037625 281 GSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALI 337 (467)
Q Consensus 281 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~ 337 (467)
...+....+.+..++.++..+.+.+.+.......+ .+....|++.++|.|.-..
T Consensus 170 TIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d---~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 170 TVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE---VNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 22233467899999999999999987754432222 3456789999999986443
No 23
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.01 E-value=2.2e-08 Score=101.01 Aligned_cols=190 Identities=14% Similarity=0.132 Sum_probs=110.4
Q ss_pred CccccchHHHHHHHHHHhcCCC-cEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 037625 135 RTVVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIG 213 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~-~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 213 (467)
..++|.+...+.|.+++..++. ..+.++|+.|+||||+|+.+++.+ ........ ...+.....+.+...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L-nC~~~~~~-------~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL-NCETGVTS-------TPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-CCCcCCCC-------CCCccCHHHHHHhcCCC
Confidence 5689999999999999987754 567999999999999999999877 21111100 00010111111110000
Q ss_pred CC---CCCCCCcCHHHHHHHHHHH-----hcCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEEecCChh-hh-h
Q 037625 214 LV---GDSWKSRSVEEKALDIFRS-----LREKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVFTTRFIG-VC-G 281 (467)
Q Consensus 214 ~~---~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iiiTtR~~~-~~-~ 281 (467)
.. .+.......++. ..+... ..++.-++|+|+++. ....+.+...+ .....++.+|++|.+.. +. .
T Consensus 87 pDviEIDAAs~~~VddI-Reli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtL-EEPP~~v~FILaTtd~~kIp~T 164 (702)
T PRK14960 87 IDLIEIDAASRTKVEDT-RELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTL-EEPPEHVKFLFATTDPQKLPIT 164 (702)
T ss_pred CceEEecccccCCHHHH-HHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHH-hcCCCCcEEEEEECChHhhhHH
Confidence 00 000001112211 112111 235667999999974 34455554444 23345667777665432 21 2
Q ss_pred hcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHH
Q 037625 282 SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALI 337 (467)
Q Consensus 282 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~ 337 (467)
..+....+++.+++.++..+.+.+.+...+...+ .+....|++.++|.+-.+.
T Consensus 165 IlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id---~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 165 VISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD---QDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 2244568899999999999999988765442222 3567789999999875443
No 24
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=4.3e-07 Score=87.45 Aligned_cols=291 Identities=20% Similarity=0.237 Sum_probs=169.9
Q ss_pred CCccccchHHHHHHHHHHhc----CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 037625 134 ERTVVGLQSQLEQVWRCLAE----ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIG 209 (467)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~~----~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 209 (467)
++.+.+|+.+++++...|.. +...-+.|+|++|+|||+.++.+.+.........+ ++++++....+..+++..|+
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHH
Confidence 34589999999999988863 23334999999999999999999999832222222 89999999999999999999
Q ss_pred HHhcCCCCCCCCcCHHHHHHHHHHHhc--CCcEEEEeCCCCChhhh--hhhccCCCCCCCCCceEE--EecCChhhh---
Q 037625 210 KKIGLVGDSWKSRSVEEKALDIFRSLR--EKRIVLLLDDIWERVDL--TKVGVPLSGPKNTTSKVV--FTTRFIGVC--- 280 (467)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~--~~~~~~l~~~~~~~s~ii--iTtR~~~~~--- 280 (467)
.+++.... ......+....+.+.+. ++.+++|||+++....- +.+...+.......++|+ ..+.+....
T Consensus 95 ~~~~~~p~--~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 95 NKLGKVPL--TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HHcCCCCC--CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHh
Confidence 99973221 34556667777777774 57899999999743111 122111211122245443 344443332
Q ss_pred -----hhcCCCcccccCCCCHHHHHHHHHHHhCCC--CCCCChhHHHHHHHHHHHhCCC-cHHHHHHHHH--hccC----
Q 037625 281 -----GSMEADRKFLVACLSEKDAWELFREKVGEE--TLKSDHDIAELAQIVANECGGL-PLALITIGRA--MAYR---- 346 (467)
Q Consensus 281 -----~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~--~~~~~~~~~~~~~~I~~~~~G~-Plai~~~~~~--l~~~---- 346 (467)
..++. ..+..+|-+.+|..+.+..++... .....++.-+++..++..-+|- -.||..+..+ ++..
T Consensus 173 d~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~ 251 (366)
T COG1474 173 DPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSR 251 (366)
T ss_pred hhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCC
Confidence 22222 347788999999999999886432 1123344455555556666653 3455444322 2221
Q ss_pred -CCHHHHHHHHHHHHhhhhcccCCccchhhhHHhchhcCCchhhhHHHHHhhcCCCCcccchHHHHHHHHHhCCccCCCc
Q 037625 347 -KKAEQWRRAIEELRRSASKFACLGKEVYPLLKFSYDSLQNDTIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFFGESDR 425 (467)
Q Consensus 347 -~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~k~~~l~~a~fp~~~~i~~~~li~~w~aeg~~~~~~~ 425 (467)
-+.+.-..+..... ...+.-....||. +.|..+...+... ..+....+-... +........
T Consensus 252 ~v~~~~v~~a~~~~~-------------~~~~~~~~~~L~~-~~ki~L~~i~~~~--~~~~~~~~y~~y--~~~~~~~~~ 313 (366)
T COG1474 252 KVSEDHVREAQEEIE-------------RDVLEEVLKTLPL-HQKIVLLAIVELT--VEISTGELYDVY--ESLCERLRT 313 (366)
T ss_pred CcCHHHHHHHHHHhh-------------HHHHHHHHHcCCH-hHHHHHHHHHHhc--CCCChHHHHHHH--HHHHhhhCc
Confidence 12222222211111 1223334677887 6666554444442 233333332211 111111111
Q ss_pred ccHHHHHHHHHHHHHHccCcccc
Q 037625 426 SGAENQGYDILDTLVRACLLEEL 448 (467)
Q Consensus 426 ~~~~~~~~~~l~~L~~~~Ll~~~ 448 (467)
......+++++|...|++...
T Consensus 314 --~~~~~~~ii~~L~~lgiv~~~ 334 (366)
T COG1474 314 --SQRRFSDIISELEGLGIVSAS 334 (366)
T ss_pred --hHHHHHHHHHHHHhcCeEEee
Confidence 355667889999999998865
No 25
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.00 E-value=2.4e-08 Score=103.76 Aligned_cols=192 Identities=16% Similarity=0.141 Sum_probs=111.4
Q ss_pred CccccchHHHHHHHHHHhcCCCcE-EEEEccCCCcHHHHHHHHHhcccCCCCCCCe-EEEEEeCCCCCHHHHHHHHHHHh
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGI-IGLYGMGGVGKTTLLTHINNKFLESPTNFDC-VIWVVVSKDLRLEKIQEDIGKKI 212 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~-i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l 212 (467)
..++|.+..++.|.+++..++... +.++|+.|+||||+|+.+++.+. ....... .+..| .....+....
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln-ce~~~~~~pCg~C--------~sC~~i~~g~ 86 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN-CEQGVTATPCGVC--------SSCVEIAQGR 86 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc-CccCCCCCCCCCc--------hHHHHHhcCC
Confidence 568999999999999998877665 58999999999999999998872 1111100 00000 0000000000
Q ss_pred c-----CCCC-CCCCcCHHHHHHHHHH-HhcCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEEec-CChhhh-h
Q 037625 213 G-----LVGD-SWKSRSVEEKALDIFR-SLREKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVFTT-RFIGVC-G 281 (467)
Q Consensus 213 ~-----~~~~-~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iiiTt-R~~~~~-~ 281 (467)
. .... ........++...+.. -..+++-++|||+++. ....+.+...+ -....++++|++| ....+. .
T Consensus 87 ~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtL-EEPP~~vrFILaTTe~~kLl~T 165 (944)
T PRK14949 87 FVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTL-EEPPEHVKFLLATTDPQKLPVT 165 (944)
T ss_pred CceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHH-hccCCCeEEEEECCCchhchHH
Confidence 0 0000 0000111122222211 1245778999999974 34555555544 2333456666544 444443 2
Q ss_pred hcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHH
Q 037625 282 SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITI 339 (467)
Q Consensus 282 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 339 (467)
.......|++.+|+.++..+++.+.+.......+ .+.+..|++.++|.|--+..+
T Consensus 166 IlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~e---deAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 166 VLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFE---AEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred HHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 2333468999999999999999987754332222 356788999999988644433
No 26
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.00 E-value=1.2e-08 Score=98.66 Aligned_cols=198 Identities=12% Similarity=0.117 Sum_probs=111.8
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCC-CeEEEEEeCCCCCH--HHHHH--HHH
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNF-DCVIWVVVSKDLRL--EKIQE--DIG 209 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~~~~~~~--~~~~~--~i~ 209 (467)
+.++|++..++.+.+++..+..+.+.++|++|+||||+|+.+++... ...+ ...+++++++.... ..+.. ...
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY--GDPWENNFTEFNVADFFDQGKKYLVEDPRFA 92 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc--CcccccceEEechhhhhhcchhhhhcCcchh
Confidence 56899999999999999887767889999999999999999998872 1222 22344444321100 00000 000
Q ss_pred HHhcCCCCCCCCcCHHHHHHHHHHHh------cCCcEEEEeCCCCCh--hhhhhhccCCCCCCCCCceEEEecCCh-hhh
Q 037625 210 KKIGLVGDSWKSRSVEEKALDIFRSL------REKRIVLLLDDIWER--VDLTKVGVPLSGPKNTTSKVVFTTRFI-GVC 280 (467)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~~~~l~~~l------~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iiiTtR~~-~~~ 280 (467)
...+.. .. ...........+.+.. ...+-+||+||++.. .....+...+ ......+++|+||.+. .+.
T Consensus 93 ~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~l-e~~~~~~~~Il~~~~~~~~~ 169 (337)
T PRK12402 93 HFLGTD-KR-IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIM-EQYSRTCRFIIATRQPSKLI 169 (337)
T ss_pred hhhhhh-hh-hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHH-HhccCCCeEEEEeCChhhCc
Confidence 000000 00 0011112222222111 134558999999643 2233333333 2223456777776543 222
Q ss_pred h-hcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHH
Q 037625 281 G-SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIG 340 (467)
Q Consensus 281 ~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 340 (467)
. .......+.+.+++.++...++.+.+.......+ .+.+..+++.++|.+-.+....
T Consensus 170 ~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~---~~al~~l~~~~~gdlr~l~~~l 227 (337)
T PRK12402 170 PPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD---DDGLELIAYYAGGDLRKAILTL 227 (337)
T ss_pred hhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 1 2223356788999999999999987654442222 4677889999999876554433
No 27
>PRK08727 hypothetical protein; Validated
Probab=98.96 E-value=1.4e-08 Score=92.27 Aligned_cols=169 Identities=14% Similarity=0.109 Sum_probs=98.4
Q ss_pred Cccccch-HHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 037625 135 RTVVGLQ-SQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIG 213 (467)
Q Consensus 135 ~~~vGr~-~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 213 (467)
+.|++.. ..+..+...........+.|+|++|+|||.|++.+++... .....+.|++..+ ....+.
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~~~------~~~~~~---- 85 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPLQA------AAGRLR---- 85 (233)
T ss_pred hhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeHHH------hhhhHH----
Confidence 3455444 3344444443333445799999999999999999998872 2234566765322 111111
Q ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh---hhh-hhhccCCCCCCCCCceEEEecCChhh---------h
Q 037625 214 LVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER---VDL-TKVGVPLSGPKNTTSKVVFTTRFIGV---------C 280 (467)
Q Consensus 214 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~-~~~~~~l~~~~~~~s~iiiTtR~~~~---------~ 280 (467)
...+.+. +.-+||+||+... ..+ ..+...+......+..+|+||+...- .
T Consensus 86 ----------------~~~~~l~-~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~ 148 (233)
T PRK08727 86 ----------------DALEALE-GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLR 148 (233)
T ss_pred ----------------HHHHHHh-cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHH
Confidence 1111221 2358999999632 122 22222221112346679999984322 2
Q ss_pred hhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHH
Q 037625 281 GSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLAL 336 (467)
Q Consensus 281 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 336 (467)
..+.....+++++++.++..+++.+++.......+ .+....|++.++|-.-.+
T Consensus 149 SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 149 SRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 22233467899999999999999987654332222 366778888888765544
No 28
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.93 E-value=5.5e-08 Score=94.48 Aligned_cols=190 Identities=18% Similarity=0.221 Sum_probs=108.5
Q ss_pred CccccchHHHHHHHHHHhcCCCc-EEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAG-IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIG 213 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~-~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 213 (467)
.+++|.+..++.+.+.+..++.+ .+.++|+.|+||||+|+.+++... ...... ..+.........+.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~-c~~~~~-------~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN-CQNGIT-------SNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc-CCCCCC-------CCCCCCCHHHHHHhcCCC
Confidence 56899999999999999876554 568999999999999999998762 111000 000000001111111000
Q ss_pred CCC---CCCCCcCHHHHHHHHHHHh-----cCCcEEEEeCCCCCh--hhhhhhccCCCCCCCCCceEEEecCCh-hhhh-
Q 037625 214 LVG---DSWKSRSVEEKALDIFRSL-----REKRIVLLLDDIWER--VDLTKVGVPLSGPKNTTSKVVFTTRFI-GVCG- 281 (467)
Q Consensus 214 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iiiTtR~~-~~~~- 281 (467)
... +.......++ ...+.+.+ .+++-++|+|+++.. ..++.+...+ ...+..+.+|++|.+. .+..
T Consensus 88 ~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~l-Ee~~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 88 LDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTL-EEPPQHIKFILATTDVEKIPKT 165 (363)
T ss_pred CceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHH-hcCCCCeEEEEEcCChHhhhHH
Confidence 000 0000011111 22222222 235569999999753 3455554444 3334566677666543 3321
Q ss_pred hcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHH
Q 037625 282 SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALI 337 (467)
Q Consensus 282 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~ 337 (467)
..+....+++.+++.++..+++...+...+...+ .+.+..|++.++|.|--+.
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~---~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKESIDTD---EYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 2233467899999999999999887654332222 3567789999999886443
No 29
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.92 E-value=1.9e-08 Score=91.46 Aligned_cols=169 Identities=12% Similarity=0.143 Sum_probs=99.7
Q ss_pred ccchH-HHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC
Q 037625 138 VGLQS-QLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVG 216 (467)
Q Consensus 138 vGr~~-~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 216 (467)
+|... .+..+.++......+.+.|+|++|+|||+|++.+++... .....+.|+++.....
T Consensus 26 ~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~~---------------- 86 (235)
T PRK08084 26 PGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRAW---------------- 86 (235)
T ss_pred cCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHhh----------------
Confidence 36333 344455554445557899999999999999999998772 2234566766532110
Q ss_pred CCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh---hhhh-hhccCCCCCCCCC-ceEEEecCChh---------hhhh
Q 037625 217 DSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER---VDLT-KVGVPLSGPKNTT-SKVVFTTRFIG---------VCGS 282 (467)
Q Consensus 217 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~-~~~~~l~~~~~~~-s~iiiTtR~~~---------~~~~ 282 (467)
... .+.+.+.. --+|++||+... ..|+ .+...+......| .++|+||+... +...
T Consensus 87 ------~~~----~~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SR 155 (235)
T PRK08084 87 ------FVP----EVLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASR 155 (235)
T ss_pred ------hhH----HHHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHH
Confidence 000 11111211 237899999632 2332 2222221111233 47889888542 2333
Q ss_pred cCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHH
Q 037625 283 MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITI 339 (467)
Q Consensus 283 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 339 (467)
+.....+++.+++.++-.+++.+++.......+ ++....|++.+.|..-.+..+
T Consensus 156 l~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~---~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 156 LDWGQIYKLQPLSDEEKLQALQLRARLRGFELP---EDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HhCCceeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhhcCCHHHHHHH
Confidence 345578899999999999999886654333333 467778888888766555443
No 30
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.92 E-value=5.6e-08 Score=93.32 Aligned_cols=180 Identities=13% Similarity=0.144 Sum_probs=107.4
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEe--CCCCCHHHHHHHHHHHh
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVV--SKDLRLEKIQEDIGKKI 212 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l 212 (467)
.+++|++..++.+..++..+..+.+.|+|++|+||||+++.+++.... ..+. ..++.+ +.......+...+ ..+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~--~~~~-~~~i~~~~~~~~~~~~~~~~i-~~~ 92 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYG--EDWR-ENFLELNASDERGIDVIRNKI-KEF 92 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcC--Cccc-cceEEeccccccchHHHHHHH-HHH
Confidence 458999999999999998777777899999999999999999988621 1121 112222 2222111111111 111
Q ss_pred cCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh--hhhhhhccCCCCCCCCCceEEEecCCh-hhh-hhcCCCcc
Q 037625 213 GLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER--VDLTKVGVPLSGPKNTTSKVVFTTRFI-GVC-GSMEADRK 288 (467)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iiiTtR~~-~~~-~~~~~~~~ 288 (467)
....+ .....+-++++|+++.. .....+...+ ......+.+|+++... .+. ........
T Consensus 93 ~~~~~----------------~~~~~~~vviiDe~~~l~~~~~~~L~~~l-e~~~~~~~lIl~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 93 ARTAP----------------VGGAPFKIIFLDEADNLTSDAQQALRRTM-EMYSQNTRFILSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred HhcCC----------------CCCCCceEEEEeCcccCCHHHHHHHHHHH-hcCCCCCeEEEEeCCccccchhHHHHhhe
Confidence 00000 00123568999998643 2333443333 2233456677666432 221 11122346
Q ss_pred cccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHH
Q 037625 289 FLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALIT 338 (467)
Q Consensus 289 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~ 338 (467)
+++.+++.++...++...+...+..-+ .+.+..+++.++|.+--+..
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~~~i~---~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEGIEIT---DDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 889999999999999988765443222 35677889999998876443
No 31
>PLN03025 replication factor C subunit; Provisional
Probab=98.91 E-value=3.5e-08 Score=94.30 Aligned_cols=181 Identities=13% Similarity=0.103 Sum_probs=107.7
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCC-eEEEEEeCCCCCHHHHHHHHHHHhc
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFD-CVIWVVVSKDLRLEKIQEDIGKKIG 213 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~ 213 (467)
..++|.+..++.|..++..++.+.+.++|++|+||||+|..+++... ...|. .++-++.++..+.. ..+.+...+.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~-~vr~~i~~~~ 89 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGID-VVRNKIKMFA 89 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHH-HHHHHHHHHH
Confidence 56899999999999888877777789999999999999999998861 11221 12222222222222 1222221111
Q ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh--hhhhhhccCCCCCCCCCceEEEecCCh-hhh-hhcCCCccc
Q 037625 214 LVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER--VDLTKVGVPLSGPKNTTSKVVFTTRFI-GVC-GSMEADRKF 289 (467)
Q Consensus 214 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iiiTtR~~-~~~-~~~~~~~~~ 289 (467)
.... ..-.++.-++|||+++.. .....+...+ ...+..+++|+++... .+. ...+....+
T Consensus 90 ~~~~---------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~l-E~~~~~t~~il~~n~~~~i~~~L~SRc~~i 153 (319)
T PLN03025 90 QKKV---------------TLPPGRHKIVILDEADSMTSGAQQALRRTM-EIYSNTTRFALACNTSSKIIEPIQSRCAIV 153 (319)
T ss_pred hccc---------------cCCCCCeEEEEEechhhcCHHHHHHHHHHH-hcccCCceEEEEeCCccccchhHHHhhhcc
Confidence 0000 000234679999999743 2233333222 1223456677666432 221 112233578
Q ss_pred ccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHH
Q 037625 290 LVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALI 337 (467)
Q Consensus 290 ~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~ 337 (467)
++.+++.++....+...+...+...+ .+....|++.++|..-.+.
T Consensus 154 ~f~~l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 154 RFSRLSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 99999999999999988765443333 3567889999998765443
No 32
>PF14516 AAA_35: AAA-like domain
Probab=98.89 E-value=1.5e-06 Score=83.35 Aligned_cols=204 Identities=13% Similarity=0.090 Sum_probs=121.8
Q ss_pred CCCCccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCC-----CCHHHHHH
Q 037625 132 PTERTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-----LRLEKIQE 206 (467)
Q Consensus 132 ~~~~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~ 206 (467)
+..+.+|.|...-+++.+.+.+. ...+.|.|+..+|||||...+.+.. ...-...+++++... .+...+++
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l---~~~~~~~v~id~~~~~~~~~~~~~~f~~ 83 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERL---QQQGYRCVYIDLQQLGSAIFSDLEQFLR 83 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHH---HHCCCEEEEEEeecCCCcccCCHHHHHH
Confidence 44567889997777788777654 3589999999999999999999887 222345667776542 34565665
Q ss_pred HHHHHh----cCCCCC---C--CCcCHHHHHHHHHHHh---cCCcEEEEeCCCCChh--------hhhhhccCCCC-C-C
Q 037625 207 DIGKKI----GLVGDS---W--KSRSVEEKALDIFRSL---REKRIVLLLDDIWERV--------DLTKVGVPLSG-P-K 264 (467)
Q Consensus 207 ~i~~~l----~~~~~~---~--~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~--------~~~~~~~~l~~-~-~ 264 (467)
.++..+ +....- + ...+.......+.+.+ .+++++|+||+++... -+..++..... . .
T Consensus 84 ~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~ 163 (331)
T PF14516_consen 84 WFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNN 163 (331)
T ss_pred HHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccC
Confidence 555544 332110 0 0112223333343332 2589999999997421 11111111100 0 0
Q ss_pred -CCC-ceEEEe--cCChhhhh----hcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHH
Q 037625 265 -NTT-SKVVFT--TRFIGVCG----SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLAL 336 (467)
Q Consensus 265 -~~~-s~iiiT--tR~~~~~~----~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 336 (467)
... -++++. |+...... -.+....++|++|+.+|...|+...-..- . .+..+.|...+||+|..+
T Consensus 164 ~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~----~---~~~~~~l~~~tgGhP~Lv 236 (331)
T PF14516_consen 164 PIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF----S---QEQLEQLMDWTGGHPYLV 236 (331)
T ss_pred cccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC----C---HHHHHHHHHHHCCCHHHH
Confidence 011 122222 22111110 11234578899999999999988763221 1 233889999999999999
Q ss_pred HHHHHHhccC
Q 037625 337 ITIGRAMAYR 346 (467)
Q Consensus 337 ~~~~~~l~~~ 346 (467)
..++..+..+
T Consensus 237 ~~~~~~l~~~ 246 (331)
T PF14516_consen 237 QKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHc
Confidence 9999999764
No 33
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=1.5e-07 Score=94.79 Aligned_cols=180 Identities=14% Similarity=0.159 Sum_probs=109.2
Q ss_pred CccccchHHHHHHHHHHhcCCCc-EEEEEccCCCcHHHHHHHHHhcccCCCCCC-------------------CeEEEEE
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAG-IIGLYGMGGVGKTTLLTHINNKFLESPTNF-------------------DCVIWVV 194 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~-~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f-------------------~~~~wv~ 194 (467)
.++||.+..++.|.+++..++.+ .+.++|+.|+||||+|+.+++.+. ....+ ..++.++
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~-c~~~~~~~pCg~C~~C~~i~~g~~~d~~eid 94 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN-CEKGVSANPCNDCENCREIDEGRFPDLFEVD 94 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc-CCCCCCcccCCCCHHHHHHhcCCCceEEEEc
Confidence 56899999999999999887655 468999999999999999998772 11111 1122222
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEE
Q 037625 195 VSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVF 272 (467)
Q Consensus 195 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iii 272 (467)
......+.++ ++++..+... -..++.-++|+|+++. ....+.+...+ .....++++|+
T Consensus 95 aas~~~v~~i-R~l~~~~~~~------------------p~~~~~kV~iIDE~~~ls~~a~naLLk~L-Eepp~~~~fIl 154 (509)
T PRK14958 95 AASRTKVEDT-RELLDNIPYA------------------PTKGRFKVYLIDEVHMLSGHSFNALLKTL-EEPPSHVKFIL 154 (509)
T ss_pred ccccCCHHHH-HHHHHHHhhc------------------cccCCcEEEEEEChHhcCHHHHHHHHHHH-hccCCCeEEEE
Confidence 2212222221 1122211110 1134567899999974 34455555544 23344566665
Q ss_pred ecC-Chhhh-hhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHH
Q 037625 273 TTR-FIGVC-GSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALIT 338 (467)
Q Consensus 273 TtR-~~~~~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~ 338 (467)
+|. ...+. ...+....+++.+++.++....+.+.+...+...+ .+....|++.++|.+.-+..
T Consensus 155 attd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~---~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 155 ATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE---NAALDLLARAANGSVRDALS 219 (509)
T ss_pred EECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHH
Confidence 544 33332 22233457889999999999888877655442222 34567889999998854443
No 34
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.88 E-value=7e-08 Score=96.86 Aligned_cols=198 Identities=19% Similarity=0.131 Sum_probs=113.4
Q ss_pred CccccchHHHHHHHHHHhcCCCc-EEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAG-IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIG 213 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~-~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 213 (467)
.+++|.+..++.|..++..+..+ .+.++|++|+||||+|+.+++.+ ...+.+...+|.|.+... +....+.-...+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l-~c~~~~~~~cg~C~sc~~-i~~~~h~dv~el~ 91 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAV-NCSGEDPKPCGECESCLA-VRRGAHPDVLEID 91 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH-hccCCCCCCCCcChhhHH-HhcCCCCceEEec
Confidence 56899999999999999877654 45999999999999999999887 221222223333221100 0000000000000
Q ss_pred CCCCCCCCcCHHHHHHHHHHHh-----cCCcEEEEeCCCCCh--hhhhhhccCCCCCCCCCceEEEecC-Chhhhh-hcC
Q 037625 214 LVGDSWKSRSVEEKALDIFRSL-----REKRIVLLLDDIWER--VDLTKVGVPLSGPKNTTSKVVFTTR-FIGVCG-SME 284 (467)
Q Consensus 214 ~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iiiTtR-~~~~~~-~~~ 284 (467)
.. .....+. +..+.+.+ .+++-++|+|+++.. ..++.+...+ .....++.+|++|. ...+.. ...
T Consensus 92 ~~----~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~L-Eep~~~t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 92 AA----SNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTL-EEPPEHVIFILATTEPEKMPPTILS 165 (504)
T ss_pred cc----ccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHH-HhCCCCEEEEEEcCChhhCChHHhc
Confidence 00 0111111 12222222 245679999999743 4455555555 22334455555444 333322 223
Q ss_pred CCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHH-HHHHHHh
Q 037625 285 ADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLAL-ITIGRAM 343 (467)
Q Consensus 285 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai-~~~~~~l 343 (467)
....+++.+++.++..+++.+.+...+...+ .+.+..|++.++|.+--+ ..+-.++
T Consensus 166 Rc~~~~f~~ls~~el~~~L~~i~~~egi~i~---~~Al~~ia~~s~GdlR~aln~Lekl~ 222 (504)
T PRK14963 166 RTQHFRFRRLTEEEIAGKLRRLLEAEGREAE---PEALQLVARLADGAMRDAESLLERLL 222 (504)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3457899999999999999998765442222 356789999999988644 3333333
No 35
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=2e-07 Score=88.87 Aligned_cols=177 Identities=12% Similarity=0.144 Sum_probs=114.6
Q ss_pred CccccchHHHHHHHHHHhcCCC-cEEEEEccCCCcHHHHHHHHHhccc---CCCCCCCeEEEEEe-CCCCCHHHHHHHHH
Q 037625 135 RTVVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTHINNKFL---ESPTNFDCVIWVVV-SKDLRLEKIQEDIG 209 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~-~~i~I~G~~GiGKTtLa~~v~~~~~---~~~~~f~~~~wv~~-~~~~~~~~~~~~i~ 209 (467)
..++|.+..++.+.+.+..++. +.+.++|+.|+||||+|+.+++.+. ....++|...|... +......++ +++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHH
Confidence 3578999999999999987654 4668999999999999999998651 12356666555432 222233332 2222
Q ss_pred HHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCC--ChhhhhhhccCCCCCCCCCceEEEecCChhhh--hhcCC
Q 037625 210 KKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIW--ERVDLTKVGVPLSGPKNTTSKVVFTTRFIGVC--GSMEA 285 (467)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~--~~~~~~~~~~~l~~~~~~~s~iiiTtR~~~~~--~~~~~ 285 (467)
..+.... ..+++-++|+|+++ +...++.+...+ ...+.++.+|++|.+.... ...+.
T Consensus 83 ~~~~~~p------------------~~~~~kv~iI~~ad~m~~~a~naLLK~L-Eepp~~t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 83 EEVNKKP------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTI-EEPPKGVFIILLCENLEQILDTIKSR 143 (313)
T ss_pred HHHhcCc------------------ccCCceEEEEechhhcCHHHHHHHHHHh-cCCCCCeEEEEEeCChHhCcHHHHhh
Confidence 3222110 12455677777765 456677777776 4556678888877655321 12233
Q ss_pred CcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHH
Q 037625 286 DRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALIT 338 (467)
Q Consensus 286 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~ 338 (467)
...+++.+++.++...++.+...... .+.+..++..++|.|.-+..
T Consensus 144 c~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 144 CQIYKLNRLSKEEIEKFISYKYNDIK-------EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred ceeeeCCCcCHHHHHHHHHHHhcCCC-------HHHHHHHHHHcCCCHHHHHH
Confidence 46889999999999998877653111 24467889999999875543
No 36
>PF13173 AAA_14: AAA domain
Probab=98.84 E-value=6.5e-09 Score=85.21 Aligned_cols=120 Identities=17% Similarity=0.140 Sum_probs=79.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL 235 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 235 (467)
.+++.|.|+.|+|||||+++++++. . ....++|++..+....... ..+ ..+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~---~-~~~~~~yi~~~~~~~~~~~------------------~~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL---L-PPENILYINFDDPRDRRLA------------------DPD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh---c-ccccceeeccCCHHHHHHh------------------hhh-hHHHHHHhh
Confidence 4689999999999999999999887 2 4456677765544321100 000 223333333
Q ss_pred cCCcEEEEeCCCCChhhhhhhccCCCCCCCCCceEEEecCChhhhhh------cCCCcccccCCCCHHHH
Q 037625 236 REKRIVLLLDDIWERVDLTKVGVPLSGPKNTTSKVVFTTRFIGVCGS------MEADRKFLVACLSEKDA 299 (467)
Q Consensus 236 ~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iiiTtR~~~~~~~------~~~~~~~~l~~L~~~e~ 299 (467)
..++.+|+||++....+|......+ ....+..+|++|+.+...... .+....+++.||+..|-
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l-~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFL-VDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHH-HHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 4478899999998877777766555 344467899999987665422 12224678999998763
No 37
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=2.3e-07 Score=89.44 Aligned_cols=195 Identities=13% Similarity=0.071 Sum_probs=111.9
Q ss_pred CCccccchHHHHHHHHHHhcCCCc-EEEEEccCCCcHHHHHHHHHhcccCCC-CCCCe-EE-EEEeCCCCCHHHHHHHHH
Q 037625 134 ERTVVGLQSQLEQVWRCLAEESAG-IIGLYGMGGVGKTTLLTHINNKFLESP-TNFDC-VI-WVVVSKDLRLEKIQEDIG 209 (467)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~~~~~~-~i~I~G~~GiGKTtLa~~v~~~~~~~~-~~f~~-~~-wv~~~~~~~~~~~~~~i~ 209 (467)
...++|.+...+.|.+.+..++.+ .+.++|+.|+||+|+|..+++.+.-.. ..... .. -.++. ........+.+.
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~~c~~c~~i~ 96 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDPDHPVARRIA 96 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCCCChHHHHHH
Confidence 356899999999999999887655 589999999999999999888772111 00000 00 00000 000011111121
Q ss_pred HHhcCCC--------CCC-----CCcCHHHHHHHHHHHhc-----CCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCce
Q 037625 210 KKIGLVG--------DSW-----KSRSVEEKALDIFRSLR-----EKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSK 269 (467)
Q Consensus 210 ~~l~~~~--------~~~-----~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~ 269 (467)
.. ..+. +.. .....++ +..+.+.+. +.+.++|+|+++. ....+.+...+ .....++.
T Consensus 97 ~~-~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~L-Eepp~~~~ 173 (365)
T PRK07471 97 AG-AHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVL-EEPPARSL 173 (365)
T ss_pred cc-CCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHH-hcCCCCeE
Confidence 11 0000 000 0112222 344444442 4677999999973 34455555444 23334566
Q ss_pred EEEecCChh-hh-hhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHH
Q 037625 270 VVFTTRFIG-VC-GSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITI 339 (467)
Q Consensus 270 iiiTtR~~~-~~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 339 (467)
+|++|.+.. +. ...+....+.+.+++.++..+++.+...... .+....++..++|.|+....+
T Consensus 174 ~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-------~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 174 FLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-------DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-------HHHHHHHHHHcCCCHHHHHHH
Confidence 666666543 32 2223446789999999999999988653211 122367899999999865443
No 38
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.84 E-value=4.2e-08 Score=82.33 Aligned_cols=124 Identities=24% Similarity=0.183 Sum_probs=74.0
Q ss_pred ccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC
Q 037625 138 VGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGD 217 (467)
Q Consensus 138 vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 217 (467)
+|++..++.+...+.....+.+.|+|++|+|||++++.+++... .....++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 47888999999998776677899999999999999999999872 223445666554433222211111000
Q ss_pred CCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh-----hhhhhhccCCCCC--CCCCceEEEecCChh
Q 037625 218 SWKSRSVEEKALDIFRSLREKRIVLLLDDIWER-----VDLTKVGVPLSGP--KNTTSKVVFTTRFIG 278 (467)
Q Consensus 218 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----~~~~~~~~~l~~~--~~~~s~iiiTtR~~~ 278 (467)
............++.+||+||++.. ..+.......... ...+..+|+||....
T Consensus 72 --------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 --------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred --------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001111223456789999999842 2222222222011 146788888888654
No 39
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=3.1e-07 Score=93.78 Aligned_cols=194 Identities=14% Similarity=0.148 Sum_probs=110.4
Q ss_pred CccccchHHHHHHHHHHhcCCC-cEEEEEccCCCcHHHHHHHHHhcccCCCCCC--CeEEEEEeCCCCCHHHHHHHHHHH
Q 037625 135 RTVVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPTNF--DCVIWVVVSKDLRLEKIQEDIGKK 211 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~-~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~ 211 (467)
.+++|.+..++.|.+++..++. ..+.++|+.|+||||+|+.+++.+. ..... ...-. ...+.....+.|...
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln-C~~~~~~~~~~~----~pCg~C~~C~~i~~g 90 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLN-CQGPDGQGGITA----TPCGVCQACRDIDSG 90 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCcccccCCCC----CCCCccHHHHHHHcC
Confidence 5689999999999999988765 4568999999999999999987762 11100 00000 011111111111100
Q ss_pred hcCC---CCCCCCcCHHHHHHHHHHHh-----cCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEEec-CChhhh
Q 037625 212 IGLV---GDSWKSRSVEEKALDIFRSL-----REKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVFTT-RFIGVC 280 (467)
Q Consensus 212 l~~~---~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iiiTt-R~~~~~ 280 (467)
-... .+.......++. ..+.+.. .++.-++|||+++. ...++.+...+ ......+++|++| ....+.
T Consensus 91 ~h~D~~eldaas~~~Vd~i-Reli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtL-EEPP~~~~fIL~Ttd~~kil 168 (618)
T PRK14951 91 RFVDYTELDAASNRGVDEV-QQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTL-EEPPEYLKFVLATTDPQKVP 168 (618)
T ss_pred CCCceeecCcccccCHHHH-HHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhc-ccCCCCeEEEEEECCchhhh
Confidence 0000 000001112221 1222221 24556899999974 34555565555 3334455666544 433332
Q ss_pred -hhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHH
Q 037625 281 -GSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALIT 338 (467)
Q Consensus 281 -~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~ 338 (467)
...+....+++.+++.++..+.+.+.+...+...+ .+....|++.++|.+--+..
T Consensus 169 ~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie---~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 169 VTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE---PQALRLLARAARGSMRDALS 224 (618)
T ss_pred HHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 23344568999999999999999987765442222 35677899999997754443
No 40
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=4e-08 Score=96.36 Aligned_cols=192 Identities=14% Similarity=0.142 Sum_probs=110.6
Q ss_pred CccccchHHHHHHHHHHhcCCCc-EEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAG-IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIG 213 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~-~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 213 (467)
..++|.+..+..|..++..++.+ .+.++|+.|+||||+|+.+++.+ ......... .+........+.......+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~L-nce~~~~~~---pCg~C~sC~~i~~g~~~dvi 93 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRL-NCENPIGNE---PCNECTSCLEITKGISSDVL 93 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhc-CcccccCcc---ccCCCcHHHHHHccCCccce
Confidence 56899999999999999887754 58999999999999999999987 211111100 01111111111111100000
Q ss_pred -CCC-CCCCCcCHHHHHHHHHHH-hcCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEE-ecCChhhh-hhcCCC
Q 037625 214 -LVG-DSWKSRSVEEKALDIFRS-LREKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVF-TTRFIGVC-GSMEAD 286 (467)
Q Consensus 214 -~~~-~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iii-TtR~~~~~-~~~~~~ 286 (467)
... ......+..++.+.+... ..++.-++|+|+++. ...++.+...+ -.....+.+|+ ||....+. ...+..
T Consensus 94 EIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtL-EEPp~~viFILaTte~~kI~~TI~SRC 172 (484)
T PRK14956 94 EIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTL-EEPPAHIVFILATTEFHKIPETILSRC 172 (484)
T ss_pred eechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHh-hcCCCceEEEeecCChhhccHHHHhhh
Confidence 000 000011112222222211 235667999999974 35566665555 22334555554 55544442 222334
Q ss_pred cccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcH
Q 037625 287 RKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPL 334 (467)
Q Consensus 287 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl 334 (467)
..|.+.+++.++..+.+.+.+...+..-+ .+....|++.++|.+-
T Consensus 173 q~~~f~~ls~~~i~~~L~~i~~~Egi~~e---~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 173 QDFIFKKVPLSVLQDYSEKLCKIENVQYD---QEGLFWIAKKGDGSVR 217 (484)
T ss_pred heeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCChHH
Confidence 57899999999999999988765442222 3667899999999884
No 41
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=6.2e-07 Score=89.38 Aligned_cols=186 Identities=18% Similarity=0.170 Sum_probs=108.2
Q ss_pred CccccchHHHHHHHHHHhcCCCc-EEEEEccCCCcHHHHHHHHHhcccCCCCC-C-----------------CeEEEEEe
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAG-IIGLYGMGGVGKTTLLTHINNKFLESPTN-F-----------------DCVIWVVV 195 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~-~i~I~G~~GiGKTtLa~~v~~~~~~~~~~-f-----------------~~~~wv~~ 195 (467)
+.++|.+...+.|...+..+..+ .+.++|++|+||||+|+.+++........ + ..+..++.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~a 93 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDA 93 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeC
Confidence 56899999888888888877664 57999999999999999998876211000 0 01111111
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh--hhhhhhccCCCCCCCCCceEEEe
Q 037625 196 SKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER--VDLTKVGVPLSGPKNTTSKVVFT 273 (467)
Q Consensus 196 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iiiT 273 (467)
+......++ +.+...... .-..+++-++|+|+++.. ...+.+...+ ...+..+.+|++
T Consensus 94 a~~~gid~i-R~i~~~~~~------------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~L-E~p~~~vv~Ila 153 (472)
T PRK14962 94 ASNRGIDEI-RKIRDAVGY------------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTL-EEPPSHVVFVLA 153 (472)
T ss_pred cccCCHHHH-HHHHHHHhh------------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHH-HhCCCcEEEEEE
Confidence 111111111 111111100 001245679999999643 3344444444 222234444444
Q ss_pred cCC-hhhhh-hcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCC-cHHHHHHHHHh
Q 037625 274 TRF-IGVCG-SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGL-PLALITIGRAM 343 (467)
Q Consensus 274 tR~-~~~~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~-Plai~~~~~~l 343 (467)
|.+ ..+.. .......+++.+++.++....+.+.+......-+ .+....|++.++|. +.++..+-.+.
T Consensus 154 ttn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~---~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 154 TTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID---REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred eCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 433 33322 2234467889999999999999887754332222 35677888888654 67777776544
No 42
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.83 E-value=4.9e-08 Score=85.39 Aligned_cols=176 Identities=17% Similarity=0.156 Sum_probs=92.5
Q ss_pred CCccccchHHHHHHHHHHh-----cCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHH
Q 037625 134 ERTVVGLQSQLEQVWRCLA-----EESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDI 208 (467)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~-----~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 208 (467)
-++|+|.+.-++.+.-++. .+....+.+|||+|+||||||..+++.. ...|. +.+.+.-....+
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~i~k~~d----- 91 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPAIEKAGD----- 91 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC--SCHH-----
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchhhhhHHH-----
Confidence 4679999998888665553 2346789999999999999999999988 43432 222111111111
Q ss_pred HHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh--hh-------hhhhccCCCCCCCC-----------Cc
Q 037625 209 GKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER--VD-------LTKVGVPLSGPKNT-----------TS 268 (467)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~-------~~~~~~~l~~~~~~-----------~s 268 (467)
+...+ ..+ +++-+|.+|++... .. .+.....+....++ -+
T Consensus 92 ------------------l~~il-~~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 92 ------------------LAAIL-TNL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp ------------------HHHHH-HT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred ------------------HHHHH-Hhc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 11111 112 23557778988631 11 12211100011111 12
Q ss_pred eEEEecCChhhhhhcC--CCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHHHHh
Q 037625 269 KVVFTTRFIGVCGSME--ADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIGRAM 343 (467)
Q Consensus 269 ~iiiTtR~~~~~~~~~--~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l 343 (467)
-|=.|||...+..-+. .....+++..+.+|..++..+.+...+... ..+.+..|++.|.|-|--..-+....
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i---~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEI---DEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE----HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCc---CHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 2335888654432222 223457999999999999988765444222 24778999999999998655544433
No 43
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.81 E-value=4.2e-07 Score=94.89 Aligned_cols=168 Identities=20% Similarity=0.278 Sum_probs=100.7
Q ss_pred CccccchHHHH---HHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 037625 135 RTVVGLQSQLE---QVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKK 211 (467)
Q Consensus 135 ~~~vGr~~~~~---~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 211 (467)
++|+|.+..+. .+.+.+..+..+.+.|+|++|+||||||+.+++.. ...|. .++... ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~---~lna~~-~~i~--------- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHFS---SLNAVL-AGVK--------- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCcce---eehhhh-hhhH---------
Confidence 56899988774 56677777777789999999999999999999876 33331 111110 0000
Q ss_pred hcCCCCCCCCcCHHHHHHHHHHHh--cCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEE--ecCChhh---hhh
Q 037625 212 IGLVGDSWKSRSVEEKALDIFRSL--REKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVF--TTRFIGV---CGS 282 (467)
Q Consensus 212 l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iii--TtR~~~~---~~~ 282 (467)
+..+......+.+ .+++.+|+|||++. ....+.+...+ ..++.++| ||.+... ...
T Consensus 92 -----------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l----E~g~IiLI~aTTenp~~~l~~aL 156 (725)
T PRK13341 92 -----------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV----ENGTITLIGATTENPYFEVNKAL 156 (725)
T ss_pred -----------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh----cCceEEEEEecCCChHhhhhhHh
Confidence 1111112222222 24678999999964 33444443332 23555555 4444321 112
Q ss_pred cCCCcccccCCCCHHHHHHHHHHHhC-------CCCCCCChhHHHHHHHHHHHhCCCcHHH
Q 037625 283 MEADRKFLVACLSEKDAWELFREKVG-------EETLKSDHDIAELAQIVANECGGLPLAL 336 (467)
Q Consensus 283 ~~~~~~~~l~~L~~~e~~~lf~~~~~-------~~~~~~~~~~~~~~~~I~~~~~G~Plai 336 (467)
.+....+.+++++.++...++.+.+. ......+ .+....|++.+.|..-.+
T Consensus 157 ~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~---deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 157 VSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLE---PEAEKHLVDVANGDARSL 214 (725)
T ss_pred hccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCC---HHHHHHHHHhCCCCHHHH
Confidence 22345789999999999999998764 1111112 356778889998875433
No 44
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=1.4e-07 Score=94.85 Aligned_cols=182 Identities=19% Similarity=0.179 Sum_probs=108.9
Q ss_pred CccccchHHHHHHHHHHhcCCC-cEEEEEccCCCcHHHHHHHHHhcccCCCC------------------CCCeEEEEEe
Q 037625 135 RTVVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPT------------------NFDCVIWVVV 195 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~-~~i~I~G~~GiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~~ 195 (467)
..++|.+..++.|...+..++. +.+.++|+.|+||||+|+.+++.+..... .|...+++..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 5689999999999999987655 44789999999999999999986621000 0111111111
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHH-hcCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEE-
Q 037625 196 SKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRS-LREKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVV- 271 (467)
Q Consensus 196 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~ii- 271 (467)
....... +..++...+... ..+++-++|+|+++. ....+.+...+ -.....+.+|
T Consensus 96 as~~gvd--------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~L-Eepp~~v~fIL 154 (546)
T PRK14957 96 ASRTGVE--------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTL-EEPPEYVKFIL 154 (546)
T ss_pred ccccCHH--------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHH-hcCCCCceEEE
Confidence 1111111 111222222111 235677999999974 34455555555 2333455555
Q ss_pred EecCChhhh-hhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcH-HHHHHH
Q 037625 272 FTTRFIGVC-GSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPL-ALITIG 340 (467)
Q Consensus 272 iTtR~~~~~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~~ 340 (467)
+||....+. ...+....+++.+++.++....+.+.+...+...+ .+....|++.++|.+- ++..+-
T Consensus 155 ~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e---~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 155 ATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSD---EQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred EECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 455443333 22334568899999999999888886654332222 3556788999999764 444443
No 45
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.81 E-value=3.4e-07 Score=93.35 Aligned_cols=189 Identities=13% Similarity=0.155 Sum_probs=107.3
Q ss_pred CccccchHHHHHHHHHHhcCCCc-EEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHH--
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAG-IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKK-- 211 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~-~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-- 211 (467)
..++|.+..++.|.+++..++.+ .+.++|+.|+||||+|+.+++.+ ........ ..+ ........+...
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~L-nC~~~~~~---~pC----g~C~sCr~i~~g~~ 87 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSL-NCENAQHG---EPC----GVCQSCTQIDAGRY 87 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh-cccCCCCC---CCC----cccHHHHHHhccCc
Confidence 56899999999999999877654 67999999999999999998876 11111000 000 000000000000
Q ss_pred ---hcCCCCCCCCcCHHHHHHHHHHH-----hcCCcEEEEeCCCCCh--hhhhhhccCCCCCCCCCceEEEecCCh-hhh
Q 037625 212 ---IGLVGDSWKSRSVEEKALDIFRS-----LREKRIVLLLDDIWER--VDLTKVGVPLSGPKNTTSKVVFTTRFI-GVC 280 (467)
Q Consensus 212 ---l~~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iiiTtR~~-~~~ 280 (467)
+.... ......+.. ..+... ..+++-++|||+++.. ...+.+...+ ......+++|++|.+. .+.
T Consensus 88 ~DvlEida--As~~gVd~I-Relle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtL-EEPp~~v~fILaTtd~~kL~ 163 (709)
T PRK08691 88 VDLLEIDA--ASNTGIDNI-REVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTL-EEPPEHVKFILATTDPHKVP 163 (709)
T ss_pred cceEEEec--cccCCHHHH-HHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHH-HhCCCCcEEEEEeCCccccc
Confidence 00000 001111111 111111 1246679999999743 2344444444 2223456666665433 221
Q ss_pred -hhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHH
Q 037625 281 -GSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALIT 338 (467)
Q Consensus 281 -~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~ 338 (467)
...+....+.+.+++.++....+.+.+...+...+ .+....|++.++|.+.-+..
T Consensus 164 ~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id---~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 164 VTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE---PPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred hHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHhCCCHHHHHH
Confidence 11223356788999999999999988765543222 35678999999998854443
No 46
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.81 E-value=9.3e-08 Score=91.67 Aligned_cols=198 Identities=12% Similarity=0.093 Sum_probs=113.9
Q ss_pred CCCccccchHHHHHHHHHHhcCCCc-EEEEEccCCCcHHHHHHHHHhcccCCCC-CCCeEEEEEeCCCCCHHHHHHHHHH
Q 037625 133 TERTVVGLQSQLEQVWRCLAEESAG-IIGLYGMGGVGKTTLLTHINNKFLESPT-NFDCVIWVVVSKDLRLEKIQEDIGK 210 (467)
Q Consensus 133 ~~~~~vGr~~~~~~l~~~L~~~~~~-~i~I~G~~GiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~ 210 (467)
....++|-+...+.+...+..++.+ .+.|+|+.|+||||+|..+++.+..... .+... ............+.+..
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~ 97 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQ 97 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHc
Confidence 3456899999999999999887644 5899999999999999999988722110 01111 11111112223333322
Q ss_pred Hhc-------CCCCCC-----CCcCHHHHHHHHHHHh-----cCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEE
Q 037625 211 KIG-------LVGDSW-----KSRSVEEKALDIFRSL-----REKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVV 271 (467)
Q Consensus 211 ~l~-------~~~~~~-----~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~ii 271 (467)
.-. .+.+.. .....++ +..+.+++ .+++-++|+|+++. ....+.+...+..+.....-|+
T Consensus 98 ~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiL 176 (351)
T PRK09112 98 GAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFIL 176 (351)
T ss_pred CCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEE
Confidence 210 000000 1112232 33444444 34667999999974 3344444444422223333445
Q ss_pred EecCChhhh-hhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHH
Q 037625 272 FTTRFIGVC-GSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITI 339 (467)
Q Consensus 272 iTtR~~~~~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 339 (467)
+|++...+. ...+....+++.+++.++..+++.+...... ...+....+++.++|.|.....+
T Consensus 177 it~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-----~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 177 ISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-----SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred EECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 555544332 2223345889999999999999988432211 11345678999999999865443
No 47
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=2e-07 Score=90.59 Aligned_cols=184 Identities=11% Similarity=0.023 Sum_probs=102.8
Q ss_pred CccccchHHHHHHHHHHhcCC----------CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHH
Q 037625 135 RTVVGLQSQLEQVWRCLAEES----------AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKI 204 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~----------~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 204 (467)
..++|.+..++.|.+.+..+. .+.+.++|++|+|||++|..++..+. ..... . ...+....
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~-c~~~~----~----~~Cg~C~~ 75 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQ-CTDPD----E----PGCGECRA 75 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC-CCCCC----C----CCCCCCHH
Confidence 457999999999999998653 45688999999999999999987651 11100 0 00000000
Q ss_pred HHHHHHHhc----CCCCCCCCcCHHHHHHHHHHHh-----cCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEEe
Q 037625 205 QEDIGKKIG----LVGDSWKSRSVEEKALDIFRSL-----REKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVFT 273 (467)
Q Consensus 205 ~~~i~~~l~----~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iiiT 273 (467)
-+.+..... ...+.......++ +..+.+.. .+++-++|+|+++. ....+.+...+ .....++.+|++
T Consensus 76 C~~~~~~~hpD~~~i~~~~~~i~i~~-iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~L-Eep~~~~~fIL~ 153 (394)
T PRK07940 76 CRTVLAGTHPDVRVVAPEGLSIGVDE-VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAV-EEPPPRTVWLLC 153 (394)
T ss_pred HHHHhcCCCCCEEEeccccccCCHHH-HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHh-hcCCCCCeEEEE
Confidence 011100000 0000000111122 12222222 24556888899974 33334444444 233345555555
Q ss_pred cCC-hhhh-hhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHH
Q 037625 274 TRF-IGVC-GSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALI 337 (467)
Q Consensus 274 tR~-~~~~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~ 337 (467)
|.+ ..+. ...+....+.+.+++.++..+++.+..+. + .+.+..++..++|.|....
T Consensus 154 a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~-----~---~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 154 APSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV-----D---PETARRAARASQGHIGRAR 211 (394)
T ss_pred ECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC-----C---HHHHHHHHHHcCCCHHHHH
Confidence 544 3433 22233468899999999999988754321 1 2557789999999997543
No 48
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.80 E-value=1.1e-08 Score=84.27 Aligned_cols=116 Identities=22% Similarity=0.269 Sum_probs=80.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCC--CCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLES--PTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFR 233 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 233 (467)
.+.+.|+|++|+|||++++.+.+..... ......++|+++....+...+...++.+++..... ..+..++...+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLID 81 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHHH
Confidence 4689999999999999999999876110 00145677999988889999999999999876542 3566777788888
Q ss_pred HhcCCc-EEEEeCCCCCh---hhhhhhccCCCCCCCCCceEEEecCC
Q 037625 234 SLREKR-IVLLLDDIWER---VDLTKVGVPLSGPKNTTSKVVFTTRF 276 (467)
Q Consensus 234 ~l~~k~-~LlVlDdv~~~---~~~~~~~~~l~~~~~~~s~iiiTtR~ 276 (467)
.+...+ .+||+||++.. ..++.+.... ...+.++|+..+.
T Consensus 82 ~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~---~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 82 ALDRRRVVLLVIDEADHLFSDEFLEFLRSLL---NESNIKVVLVGTP 125 (131)
T ss_dssp HHHHCTEEEEEEETTHHHHTHHHHHHHHHHT---CSCBEEEEEEESS
T ss_pred HHHhcCCeEEEEeChHhcCCHHHHHHHHHHH---hCCCCeEEEEECh
Confidence 886554 59999999653 3344444433 2667788877765
No 49
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.80 E-value=2.5e-07 Score=92.56 Aligned_cols=193 Identities=17% Similarity=0.150 Sum_probs=109.9
Q ss_pred CccccchHHHHHHHHHHhcCCC-cEEEEEccCCCcHHHHHHHHHhcccCCCCCCCe-EEEEEeCCCCCHHHHHHHHHHHh
Q 037625 135 RTVVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDC-VIWVVVSKDLRLEKIQEDIGKKI 212 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~-~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l 212 (467)
.+++|.+..++.|...+..++. +.+.++|+.|+||||+|+.+++.+. ....... .-+..+.. ......+....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln-c~~~~~~~~~~~~C~~----C~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN-CSALITENTTIKTCEQ----CTNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CccccccCcCcCCCCC----ChHHHHHhcCC
Confidence 5679999999999988877653 5789999999999999999998872 1111000 00000000 00001110000
Q ss_pred cCC---CCCCCCcCHHHHHHHHHHH----hcCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEE-ecCChhhhh-
Q 037625 213 GLV---GDSWKSRSVEEKALDIFRS----LREKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVF-TTRFIGVCG- 281 (467)
Q Consensus 213 ~~~---~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iii-TtR~~~~~~- 281 (467)
... .+.......++....+... +.+++-++|+|+++. ...++.+...+ ......+.+|+ ||+...+..
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~L-Eepp~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTL-EEPPPHIIFIFATTEVQKIPAT 174 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHH-hhcCCCEEEEEEeCChHHhhHH
Confidence 000 0000111122221111111 235677999999985 34566665555 33344556554 555544432
Q ss_pred hcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHH
Q 037625 282 SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLAL 336 (467)
Q Consensus 282 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 336 (467)
.......+++.+++.++...++.+.+...+...+ .+....|++.++|.+--+
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie---~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD---IEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 2233457889999999999999988865442222 355678999999987443
No 50
>PRK09087 hypothetical protein; Validated
Probab=98.79 E-value=7.6e-08 Score=86.71 Aligned_cols=143 Identities=17% Similarity=0.164 Sum_probs=88.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRS 234 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 234 (467)
..+.+.|+|++|+|||+|++.+++.. . ..|++.. .+...+.. .
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~---~-----~~~i~~~------~~~~~~~~-----------------------~ 85 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS---D-----ALLIHPN------EIGSDAAN-----------------------A 85 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc---C-----CEEecHH------HcchHHHH-----------------------h
Confidence 34679999999999999999988764 1 1133221 11111111 1
Q ss_pred hcCCcEEEEeCCCCCh-hhhhhhccCCCCCCCCCceEEEecCC---------hhhhhhcCCCcccccCCCCHHHHHHHHH
Q 037625 235 LREKRIVLLLDDIWER-VDLTKVGVPLSGPKNTTSKVVFTTRF---------IGVCGSMEADRKFLVACLSEKDAWELFR 304 (467)
Q Consensus 235 l~~k~~LlVlDdv~~~-~~~~~~~~~l~~~~~~~s~iiiTtR~---------~~~~~~~~~~~~~~l~~L~~~e~~~lf~ 304 (467)
+.+ -+|++||+... ..-..+...+......|..+|+|++. +.+...+.....+++++++.++-.+++.
T Consensus 86 ~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 86 AAE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred hhc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 111 27888999532 11122332221223446778888873 2233334556789999999999999999
Q ss_pred HHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHH
Q 037625 305 EKVGEETLKSDHDIAELAQIVANECGGLPLALITI 339 (467)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 339 (467)
+++.......+ +++...|++.+.|..-.+..+
T Consensus 164 ~~~~~~~~~l~---~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 164 KLFADRQLYVD---PHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHHHcCCCCC---HHHHHHHHHHhhhhHHHHHHH
Confidence 98865443333 467778888888877666543
No 51
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.79 E-value=1e-07 Score=97.49 Aligned_cols=192 Identities=17% Similarity=0.152 Sum_probs=110.8
Q ss_pred CccccchHHHHHHHHHHhcCCCcE-EEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGI-IGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIG 213 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~-i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 213 (467)
.++||.+..++.|.+.+..++... +.++|+.|+||||+|+.+++.+. ...... ..........+.|...-.
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~-c~~~~~-------~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLN-CETGIT-------ATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhh-hccCCC-------CCCCCCCHHHHHHHcCCC
Confidence 568999999999999998876544 68999999999999999998772 111000 001111111222211000
Q ss_pred CC---CCCCCCcCHHHHHHHHHHH-----hcCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEE-ecCChhhh-h
Q 037625 214 LV---GDSWKSRSVEEKALDIFRS-----LREKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVF-TTRFIGVC-G 281 (467)
Q Consensus 214 ~~---~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iii-TtR~~~~~-~ 281 (467)
.. .+.......++ +..+.+. ..++.-++|||+++. ....+.+...+ -....++++|+ ||....+. .
T Consensus 88 ~D~ieidaas~~~Vdd-iR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtL-EEPp~~v~FIL~Tt~~~kLl~T 165 (647)
T PRK07994 88 VDLIEIDAASRTKVED-TRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL-EEPPEHVKFLLATTDPQKLPVT 165 (647)
T ss_pred CCceeecccccCCHHH-HHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHH-HcCCCCeEEEEecCCccccchH
Confidence 00 00000011122 1222222 245677999999974 34555554444 23334555555 55544443 2
Q ss_pred hcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHH
Q 037625 282 SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITI 339 (467)
Q Consensus 282 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 339 (467)
..+....|++.+++.++....+.+.+.......+ .+....|++.++|.+--+..+
T Consensus 166 I~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e---~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 166 ILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE---PRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 2334568999999999999999987643332221 355678999999988644333
No 52
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.79 E-value=4.5e-07 Score=91.99 Aligned_cols=196 Identities=16% Similarity=0.164 Sum_probs=111.8
Q ss_pred CccccchHHHHHHHHHHhcCC-CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 037625 135 RTVVGLQSQLEQVWRCLAEES-AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIG 213 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~-~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 213 (467)
.+++|.+..++.|.+.+..++ .+.+.++|+.|+||||+|+.+++.+. ....... ...+.....+.+.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~-C~~~~~~-------~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN-CETAPTG-------EPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc-ccCCCCC-------CCCcccHHHHHHhcCCC
Confidence 567999998999999888765 46788999999999999999998872 1111100 00011111111111100
Q ss_pred CCC---CCCCCcCHHHHHHHHHHH-----hcCCcEEEEeCCCCCh--hhhhhhccCCCCCCCCCceEEEec-CChhhh-h
Q 037625 214 LVG---DSWKSRSVEEKALDIFRS-----LREKRIVLLLDDIWER--VDLTKVGVPLSGPKNTTSKVVFTT-RFIGVC-G 281 (467)
Q Consensus 214 ~~~---~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iiiTt-R~~~~~-~ 281 (467)
... +.......++ +..+.+. ..+++-++|+|+++.. ...+.+...+ ........+|++| ....+. .
T Consensus 88 pDv~eId~a~~~~Id~-iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~L-EEP~~~~ifILaTt~~~kll~T 165 (624)
T PRK14959 88 VDVVEIDGASNRGIDD-AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTL-EEPPARVTFVLATTEPHKFPVT 165 (624)
T ss_pred CceEEEecccccCHHH-HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHh-hccCCCEEEEEecCChhhhhHH
Confidence 000 0000011111 1122222 2356679999999743 4455555544 2222345555544 434443 2
Q ss_pred hcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCc-HHHHHHHHHh
Q 037625 282 SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLP-LALITIGRAM 343 (467)
Q Consensus 282 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P-lai~~~~~~l 343 (467)
.......+++.+++.++....+...+.......+ .+.+..|++.++|.+ .++..+..++
T Consensus 166 I~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id---~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 166 IVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD---PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2233457889999999999999887654432222 356778999999965 6777766554
No 53
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=4e-07 Score=92.30 Aligned_cols=180 Identities=18% Similarity=0.197 Sum_probs=108.3
Q ss_pred CccccchHHHHHHHHHHhcCCCc-EEEEEccCCCcHHHHHHHHHhcccCCCCC-------------------CCeEEEEE
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAG-IIGLYGMGGVGKTTLLTHINNKFLESPTN-------------------FDCVIWVV 194 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~-~i~I~G~~GiGKTtLa~~v~~~~~~~~~~-------------------f~~~~wv~ 194 (467)
.+++|.+..++.|.+++..++.+ .+.++|+.|+||||+|+.+++.+. .... |...+++.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~-c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~ 94 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN-CETGVTATPCGVCSACLEIDSGRFVDLIEVD 94 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHhcCCCCceeEee
Confidence 56899999999999999877655 468999999999999999988771 1110 11111111
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh-----cCCcEEEEeCCCCCh--hhhhhhccCCCCCCCCC
Q 037625 195 VSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL-----REKRIVLLLDDIWER--VDLTKVGVPLSGPKNTT 267 (467)
Q Consensus 195 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~ 267 (467)
.+.. ...++. ..+.... .+++-++|+|+++.. ...+.+...+ ......
T Consensus 95 ~~~~-----------------------~~vd~i-r~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~L-Eepp~~ 149 (527)
T PRK14969 95 AASN-----------------------TQVDAM-RELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTL-EEPPEH 149 (527)
T ss_pred cccc-----------------------CCHHHH-HHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHH-hCCCCC
Confidence 1111 111111 1122211 356679999999743 3345554444 233345
Q ss_pred ceEEEec-CChhhh-hhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcH-HHHHHHHHh
Q 037625 268 SKVVFTT-RFIGVC-GSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPL-ALITIGRAM 343 (467)
Q Consensus 268 s~iiiTt-R~~~~~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~~~~l 343 (467)
+.+|++| ....+. ...+....+++.+++.++..+.+.+.+...+...+ .+.+..|++.++|.+- ++..+-.++
T Consensus 150 ~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~---~~al~~la~~s~Gslr~al~lldqai 225 (527)
T PRK14969 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFD---ATALQLLARAAAGSMRDALSLLDQAI 225 (527)
T ss_pred EEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5566555 433332 11222357889999999999999887754332222 3556789999999875 444443333
No 54
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.77 E-value=2e-07 Score=94.05 Aligned_cols=194 Identities=15% Similarity=0.172 Sum_probs=108.6
Q ss_pred CccccchHHHHHHHHHHhcCCC-cEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 037625 135 RTVVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIG 213 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~-~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 213 (467)
..++|++..++.+.+++..++. +.+.++|+.|+||||+|+.+++.+ ....+... ...+.....+.+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L-~C~~~~~~-------~~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI-NCLNPKDG-------DCCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh-cCCCCCCC-------CCCcccHHHHHHHcCCC
Confidence 5689999999999999977654 468899999999999999999887 21111110 01111111111111100
Q ss_pred CCC---CCCCCcCHHHHHHHHHHHh-----cCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEE-ecCChhhh-h
Q 037625 214 LVG---DSWKSRSVEEKALDIFRSL-----REKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVF-TTRFIGVC-G 281 (467)
Q Consensus 214 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iii-TtR~~~~~-~ 281 (467)
... +.......++ ++.+.... .+++-++|+|+++. ...+..+...+ -..+.++.+|+ |+....+. .
T Consensus 88 ~DiieIdaas~igVd~-IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtL-EEPp~~tvfIL~Tt~~~KLl~T 165 (605)
T PRK05896 88 VDIVELDAASNNGVDE-IRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTL-EEPPKHVVFIFATTEFQKIPLT 165 (605)
T ss_pred CceEEeccccccCHHH-HHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHH-HhCCCcEEEEEECCChHhhhHH
Confidence 000 0000011111 11121111 23445799999964 34455554444 22233455554 54444442 2
Q ss_pred hcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcH-HHHHHHH
Q 037625 282 SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPL-ALITIGR 341 (467)
Q Consensus 282 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~~~ 341 (467)
..+....+++.+++.++....+...+...+...+ .+.+..+++.++|.+. |+..+-.
T Consensus 166 I~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 166 IISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2334568899999999999999987654332222 3557789999999764 5444444
No 55
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.76 E-value=7.5e-08 Score=87.47 Aligned_cols=172 Identities=12% Similarity=0.095 Sum_probs=96.5
Q ss_pred Cccc-cchHHH-HHHHHHHhc-CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 037625 135 RTVV-GLQSQL-EQVWRCLAE-ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKK 211 (467)
Q Consensus 135 ~~~v-Gr~~~~-~~l~~~L~~-~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 211 (467)
++|+ |..... ..+.++... ...+.+.|+|++|+|||+||+.+++... ..-....+++..... ..
T Consensus 18 d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~---~~~~~~~~i~~~~~~------~~---- 84 (227)
T PRK08903 18 DNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS---YGGRNARYLDAASPL------LA---- 84 (227)
T ss_pred cccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEEehHHhH------HH----
Confidence 3444 544433 444444332 3456899999999999999999998761 112234455433211 00
Q ss_pred hcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh--hhhhhhccCCCCCCCCCc-eEEEecCChhhhh-------
Q 037625 212 IGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER--VDLTKVGVPLSGPKNTTS-KVVFTTRFIGVCG------- 281 (467)
Q Consensus 212 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s-~iiiTtR~~~~~~------- 281 (467)
+ ... .+.-+||+||++.. .....+...+......+. .+|+|++......
T Consensus 85 ~--------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~ 143 (227)
T PRK08903 85 F--------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLR 143 (227)
T ss_pred H--------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHH
Confidence 0 111 22347889999642 222223222211112333 4666666433211
Q ss_pred -hcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHHHHh
Q 037625 282 -SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIGRAM 343 (467)
Q Consensus 282 -~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l 343 (467)
.+.....+++.+++.++-..++.+.+.......+ ++....+++.+.|++..+..+...+
T Consensus 144 sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 144 TRLGWGLVYELKPLSDADKIAALKAAAAERGLQLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2222467889999998887877765433332222 3677788888999998877665544
No 56
>PRK05642 DNA replication initiation factor; Validated
Probab=98.76 E-value=1.6e-07 Score=85.26 Aligned_cols=151 Identities=15% Similarity=0.243 Sum_probs=90.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL 235 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 235 (467)
...+.|+|+.|+|||.|++.+++... .....++|++..+ +... ...+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~---~~~~~v~y~~~~~------~~~~--------------------~~~~~~~~ 95 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE---QRGEPAVYLPLAE------LLDR--------------------GPELLDNL 95 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEeeHHH------HHhh--------------------hHHHHHhh
Confidence 35789999999999999999998762 2234567775432 1110 01223333
Q ss_pred cCCcEEEEeCCCCC---hhhhh-hhccCCCCCCCCCceEEEecCChhh---------hhhcCCCcccccCCCCHHHHHHH
Q 037625 236 REKRIVLLLDDIWE---RVDLT-KVGVPLSGPKNTTSKVVFTTRFIGV---------CGSMEADRKFLVACLSEKDAWEL 302 (467)
Q Consensus 236 ~~k~~LlVlDdv~~---~~~~~-~~~~~l~~~~~~~s~iiiTtR~~~~---------~~~~~~~~~~~l~~L~~~e~~~l 302 (467)
.+-. +||+||+.. ...|+ .+...+......|..+|+|++.... ...+.....+++++++.++-.++
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 3322 678999952 22332 2333332223456778888874322 12223346788999999999999
Q ss_pred HHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHH
Q 037625 303 FREKVGEETLKSDHDIAELAQIVANECGGLPLALITI 339 (467)
Q Consensus 303 f~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 339 (467)
+..++.......+ ++....|++.+.|..-.+..+
T Consensus 175 l~~ka~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 175 LQLRASRRGLHLT---DEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHH
Confidence 9966644332222 367778888887766554443
No 57
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.75 E-value=3e-08 Score=93.44 Aligned_cols=273 Identities=20% Similarity=0.172 Sum_probs=173.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRS 234 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 234 (467)
..+.+.++|.|||||||++-++.+ . ....-+.+.++...+-.+...+.-.+...++.... +.+.....+...
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~--~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-----~g~~~~~~~~~~ 84 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A--ASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-----PGDSAVDTLVRR 84 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H--hhhcccceeeeeccccCchhHhHHHHHhhcccccc-----cchHHHHHHHHH
Confidence 357899999999999999999998 4 13445567788888887888888777777876542 223444566677
Q ss_pred hcCCcEEEEeCCCCChhh-hhhhccCCCCCCCCCceEEEecCChhhhhhcCCCcccccCCCCHH-HHHHHHHHHhCCCC-
Q 037625 235 LREKRIVLLLDDIWERVD-LTKVGVPLSGPKNTTSKVVFTTRFIGVCGSMEADRKFLVACLSEK-DAWELFREKVGEET- 311 (467)
Q Consensus 235 l~~k~~LlVlDdv~~~~~-~~~~~~~l~~~~~~~s~iiiTtR~~~~~~~~~~~~~~~l~~L~~~-e~~~lf~~~~~~~~- 311 (467)
..+++.++|+||..+..+ -......+ ..+.+.-.|+.|+|.... ........+++|+.. ++.++|...+....
T Consensus 85 ~~~rr~llvldncehl~~~~a~~i~al-l~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 85 IGDRRALLVLDNCEHLLDACAALIVAL-LGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred HhhhhHHHHhcCcHHHHHHHHHHHHHH-HccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhcc
Confidence 778899999999865311 11111111 234556678888887543 344566778888754 78888887664322
Q ss_pred -CCCChhHHHHHHHHHHHhCCCcHHHHHHHHHhccCCCHHH---HHHHHHHHHhhhhcccCCccchhhhHHhchhcCCch
Q 037625 312 -LKSDHDIAELAQIVANECGGLPLALITIGRAMAYRKKAEQ---WRRAIEELRRSASKFACLGKEVYPLLKFSYDSLQND 387 (467)
Q Consensus 312 -~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~~~~~~---~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~ 387 (467)
.............|.++.+|.|++|...++..+.-...+. .......+........--+......+.+||.-|..
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg- 239 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG- 239 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh-
Confidence 1222233466789999999999999999888766332221 11112222222111111124677899999999999
Q ss_pred hhhHHHHHhhcCCCCcccchHHHHHHHHHhCCccCCCcccHHHHHHHHHHHHHHccCcccc
Q 037625 388 TIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFFGESDRSGAENQGYDILDTLVRACLLEEL 448 (467)
Q Consensus 388 ~~k~~~l~~a~fp~~~~i~~~~li~~w~aeg~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~~ 448 (467)
..+..|.-++.|...|... ...|.+.|-... .+.-.....+..|++++++...
T Consensus 240 we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~----~~~y~~~~a~~ll~~kslv~a~ 292 (414)
T COG3903 240 WERALFGRLAVFVGGFDLG----LALAVAAGADVD----VPRYLVLLALTLLVDKSLVVAL 292 (414)
T ss_pred HHHHHhcchhhhhhhhccc----HHHHHhcCCccc----cchHHHHHHHHHHhhccchhhh
Confidence 8899999999998876544 233333332110 0122233446678888887654
No 58
>PTZ00202 tuzin; Provisional
Probab=98.74 E-value=5.8e-07 Score=85.95 Aligned_cols=164 Identities=17% Similarity=0.149 Sum_probs=100.3
Q ss_pred CCCCCCCccccchHHHHHHHHHHhcC---CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHH
Q 037625 129 DERPTERTVVGLQSQLEQVWRCLAEE---SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQ 205 (467)
Q Consensus 129 ~~~~~~~~~vGr~~~~~~l~~~L~~~---~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 205 (467)
..|+..+.|+||+.++..|...|.+. ..+++.|+|++|+|||||++.+.... . + ..++++ .. +..+++
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l---~--~-~qL~vN-pr--g~eElL 326 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE---G--M-PAVFVD-VR--GTEDTL 326 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC---C--c-eEEEEC-CC--CHHHHH
Confidence 45566788999999999999999642 34589999999999999999999776 1 1 122222 22 779999
Q ss_pred HHHHHHhcCCCCCCCCcCHHHHHHHHHHHh-----c-CCcEEEEeCCCCChhhhhhh---ccCCCCCCCCCceEEEecCC
Q 037625 206 EDIGKKIGLVGDSWKSRSVEEKALDIFRSL-----R-EKRIVLLLDDIWERVDLTKV---GVPLSGPKNTTSKVVFTTRF 276 (467)
Q Consensus 206 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~-~k~~LlVlDdv~~~~~~~~~---~~~l~~~~~~~s~iiiTtR~ 276 (467)
..++.+|+.... ....++...+.+.+ . +++.+||+-==+ -..+..+ ...+ .....-|.|++----
T Consensus 327 r~LL~ALGV~p~----~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lre-g~~l~rvyne~v~l-a~drr~ch~v~evpl 400 (550)
T PTZ00202 327 RSVVKALGVPNV----EACGDLLDFISEACRRAKKMNGETPLLVLKLRE-GSSLQRVYNEVVAL-ACDRRLCHVVIEVPL 400 (550)
T ss_pred HHHHHHcCCCCc----ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecC-CCcHHHHHHHHHHH-HccchhheeeeeehH
Confidence 999999997432 22233333333332 2 566666653221 1111111 0011 233345666653332
Q ss_pred hhhhh---hcCCCcccccCCCCHHHHHHHHHHHh
Q 037625 277 IGVCG---SMEADRKFLVACLSEKDAWELFREKV 307 (467)
Q Consensus 277 ~~~~~---~~~~~~~~~l~~L~~~e~~~lf~~~~ 307 (467)
+.+.. .+..-..|.+++|+.++|.++-.+..
T Consensus 401 eslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 401 ESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 22211 01122467899999999999888765
No 59
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=1.9e-07 Score=91.83 Aligned_cols=198 Identities=14% Similarity=0.146 Sum_probs=110.2
Q ss_pred CccccchHHHHHHHHHHhcCCCcE-EEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEE-eCCCCCHHHHHHHHHHHh
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGI-IGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVV-VSKDLRLEKIQEDIGKKI 212 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~-i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l 212 (467)
..++|.+..++.|.+++.+++.+. +.++|+.|+||||+|..+++.+ ..........|.. ..........-+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l-~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAV-NCQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHh-cCCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 568999999999999998876654 8899999999999999999877 2111111111110 000111111111111110
Q ss_pred cCCC---CCCCCcCHHHHHHHHHHHh-----cCCcEEEEeCCCCCh--hhhhhhccCCCCCCCCCceEEEec-CChhhhh
Q 037625 213 GLVG---DSWKSRSVEEKALDIFRSL-----REKRIVLLLDDIWER--VDLTKVGVPLSGPKNTTSKVVFTT-RFIGVCG 281 (467)
Q Consensus 213 ~~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iiiTt-R~~~~~~ 281 (467)
.... +.......++.. .+.+.+ .+++-++|+|+++.. ..++.+...+ ....+.+.+|++| +...+..
T Consensus 95 ~~n~~~~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~L-Eep~~~t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTL-EEPPPHAIFIFATTELHKIPA 172 (397)
T ss_pred CCCeEeecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHH-hcCCCCeEEEEEeCChHHhHH
Confidence 0000 000011122222 222333 245668899999743 4555565555 3333455555544 4443332
Q ss_pred h-cCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHH
Q 037625 282 S-MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALIT 338 (467)
Q Consensus 282 ~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~ 338 (467)
. ......+++.+++.++..+.+...+......-+ .+.+..|+..++|.+--+..
T Consensus 173 tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~---~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 173 TIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD---ADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 1 122357889999999999999887654332222 36788999999998864443
No 60
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=4.3e-07 Score=90.18 Aligned_cols=179 Identities=17% Similarity=0.184 Sum_probs=109.6
Q ss_pred CccccchHHHHHHHHHHhcCCCc-EEEEEccCCCcHHHHHHHHHhcccCCC------------------CCCCeEEEEEe
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAG-IIGLYGMGGVGKTTLLTHINNKFLESP------------------TNFDCVIWVVV 195 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~-~i~I~G~~GiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~~ 195 (467)
.+++|.+..++.|.+.+..++.+ .+.++|+.|+||||+|+.++..+.-.. +.+..++.++.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida 92 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA 92 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec
Confidence 56899999999999998877655 789999999999999999987541000 01111222222
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEEe
Q 037625 196 SKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVFT 273 (467)
Q Consensus 196 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iiiT 273 (467)
+......++ +.+....... -..++.-++|+|+++. ....+.+...+ -...+.+++|++
T Consensus 93 as~~~vddI-R~Iie~~~~~------------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~L-EePp~~v~fIla 152 (491)
T PRK14964 93 ASNTSVDDI-KVILENSCYL------------------PISSKFKVYIIDEVHMLSNSAFNALLKTL-EEPAPHVKFILA 152 (491)
T ss_pred ccCCCHHHH-HHHHHHHHhc------------------cccCCceEEEEeChHhCCHHHHHHHHHHH-hCCCCCeEEEEE
Confidence 222222221 1111111100 0124567899999964 34455555555 333445666654
Q ss_pred c-CChhhhh-hcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHH
Q 037625 274 T-RFIGVCG-SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLAL 336 (467)
Q Consensus 274 t-R~~~~~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 336 (467)
| ....+.. ..+....+++.+++.++..+.+.+.+...+..-+ .+.+..|++.++|.+--+
T Consensus 153 tte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~---~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 153 TTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD---EESLKLIAENSSGSMRNA 214 (491)
T ss_pred eCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 4 4444432 2334567899999999999999988765442222 356778999999987543
No 61
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.74 E-value=7e-07 Score=87.09 Aligned_cols=182 Identities=13% Similarity=0.159 Sum_probs=109.0
Q ss_pred CccccchHHHHHHHHHHhcCCCc-EEEEEccCCCcHHHHHHHHHhcccCC-CC------------------CCCeEEEEE
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAG-IIGLYGMGGVGKTTLLTHINNKFLES-PT------------------NFDCVIWVV 194 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~-~i~I~G~~GiGKTtLa~~v~~~~~~~-~~------------------~f~~~~wv~ 194 (467)
..++|.+..++.|.+++..+..+ .+.++|++|+||||+|+.++...... .. +++. .+++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~ 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEID 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEee
Confidence 56799999999999999876544 67899999999999999998876211 00 1111 1221
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh--hhhhhhccCCCCCCCCCceEEE
Q 037625 195 VSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER--VDLTKVGVPLSGPKNTTSKVVF 272 (467)
Q Consensus 195 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iii 272 (467)
........+ .+.+...+... -..+++-++|+|+++.. .....+...+ ......+.+|+
T Consensus 93 ~~~~~~~~~-~~~l~~~~~~~------------------p~~~~~~vviidea~~l~~~~~~~Ll~~l-e~~~~~~~lIl 152 (355)
T TIGR02397 93 AASNNGVDD-IREILDNVKYA------------------PSSGKYKVYIIDEVHMLSKSAFNALLKTL-EEPPEHVVFIL 152 (355)
T ss_pred ccccCCHHH-HHHHHHHHhcC------------------cccCCceEEEEeChhhcCHHHHHHHHHHH-hCCccceeEEE
Confidence 111111111 11111111100 01245568999998643 3344454444 23344566666
Q ss_pred ecCChh-hh-hhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHH
Q 037625 273 TTRFIG-VC-GSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIG 340 (467)
Q Consensus 273 TtR~~~-~~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 340 (467)
+|.+.. +. ........+++.+++.++..+++...+...+...+ .+.+..+++.++|.|..+....
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHHHH
Confidence 665443 22 22233457888999999999999987754432222 3677889999999997665544
No 62
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.72 E-value=6.6e-07 Score=78.68 Aligned_cols=159 Identities=16% Similarity=0.160 Sum_probs=92.1
Q ss_pred HHHHHHhcCCC-cEEEEEccCCCcHHHHHHHHHhcccCCC-------------------CCCCeEEEEEeC-CCCCHHHH
Q 037625 146 QVWRCLAEESA-GIIGLYGMGGVGKTTLLTHINNKFLESP-------------------TNFDCVIWVVVS-KDLRLEKI 204 (467)
Q Consensus 146 ~l~~~L~~~~~-~~i~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~~~-~~~~~~~~ 204 (467)
.+.+.+..++. ..+.++|+.|+||||+|+.+...+.... .+.+.. ++... .....++
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~-~~~~~~~~~~~~~- 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLH-RLEPEGQSIKVDQ- 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEE-EeccccCcCCHHH-
Confidence 45666666655 5689999999999999999988872110 111111 11111 1111111
Q ss_pred HHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh--hhhhhhccCCCCCCCCCceEEEecCCh-hhhh
Q 037625 205 QEDIGKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER--VDLTKVGVPLSGPKNTTSKVVFTTRFI-GVCG 281 (467)
Q Consensus 205 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iiiTtR~~-~~~~ 281 (467)
.+.+...+... -..+.+-++|+||++.. ...+.+...+ ...+..+.+|++|++. .+..
T Consensus 81 i~~i~~~~~~~------------------~~~~~~kviiide~~~l~~~~~~~Ll~~l-e~~~~~~~~il~~~~~~~l~~ 141 (188)
T TIGR00678 81 VRELVEFLSRT------------------PQESGRRVVIIEDAERMNEAAANALLKTL-EEPPPNTLFILITPSPEKLLP 141 (188)
T ss_pred HHHHHHHHccC------------------cccCCeEEEEEechhhhCHHHHHHHHHHh-cCCCCCeEEEEEECChHhChH
Confidence 11111111100 01245678999999643 3455555555 2333456666666543 2221
Q ss_pred -hcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcH
Q 037625 282 -SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPL 334 (467)
Q Consensus 282 -~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl 334 (467)
.......+++.+++.++..+++.+. + .. .+.+..|++.++|.|.
T Consensus 142 ~i~sr~~~~~~~~~~~~~~~~~l~~~-g----i~----~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 142 TIRSRCQVLPFPPLSEEALLQWLIRQ-G----IS----EEAAELLLALAGGSPG 186 (188)
T ss_pred HHHhhcEEeeCCCCCHHHHHHHHHHc-C----CC----HHHHHHHHHHcCCCcc
Confidence 1223458899999999999999887 2 11 3668899999999885
No 63
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.70 E-value=3e-08 Score=86.98 Aligned_cols=45 Identities=29% Similarity=0.432 Sum_probs=32.7
Q ss_pred ccccchHHHHHHHHHHh---cCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 136 TVVGLQSQLEQVWRCLA---EESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 136 ~~vGr~~~~~~l~~~L~---~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.|+||+++++++.+.+. ....+.+.|+|++|+|||+|.+.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999993 3456899999999999999999999988
No 64
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.69 E-value=3.7e-06 Score=87.02 Aligned_cols=203 Identities=14% Similarity=0.061 Sum_probs=114.8
Q ss_pred CCccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCC---CeEEEEEeCC---CCCHHHHHHH
Q 037625 134 ERTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNF---DCVIWVVVSK---DLRLEKIQED 207 (467)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~~~---~~~~~~~~~~ 207 (467)
.+.++|++..+..+.+.+.......+.|+|++|+||||||+.+++.. .....+ ...-|+.+.. ..+...+...
T Consensus 153 ~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ 231 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTNP 231 (615)
T ss_pred HHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhHH
Confidence 35689999999998888876666789999999999999999998765 211221 1123343321 1122222111
Q ss_pred H---------------HHHhcCCC----------------CCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh--hhhh
Q 037625 208 I---------------GKKIGLVG----------------DSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER--VDLT 254 (467)
Q Consensus 208 i---------------~~~l~~~~----------------~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~ 254 (467)
+ +...+... +..... .......+.+.++++++.++-|+.|.. ..|.
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~ 310 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPK 310 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEeecceeccCCcccch
Confidence 1 11111100 001111 223456677777777777776666532 3455
Q ss_pred hhccCCCCCCCCCceEEE--ecCChhh-h-hhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhC
Q 037625 255 KVGVPLSGPKNTTSKVVF--TTRFIGV-C-GSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECG 330 (467)
Q Consensus 255 ~~~~~l~~~~~~~s~iii--TtR~~~~-~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~ 330 (467)
.+...+ ....+...+++ ||++... . ........+.+.+++.+|.+.++.+.+.......+ .+....|.+.+.
T Consensus 311 ~ik~~~-~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls---~eal~~L~~ys~ 386 (615)
T TIGR02903 311 YIKKLF-EEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLA---AGVEELIARYTI 386 (615)
T ss_pred hhhhhc-ccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHCCC
Confidence 554444 23333333444 5664432 1 11122246778999999999999998764332222 345556666665
Q ss_pred CCcHHHHHHHHH
Q 037625 331 GLPLALITIGRA 342 (467)
Q Consensus 331 G~Plai~~~~~~ 342 (467)
.-+-++..++..
T Consensus 387 ~gRraln~L~~~ 398 (615)
T TIGR02903 387 EGRKAVNILADV 398 (615)
T ss_pred cHHHHHHHHHHH
Confidence 556777766544
No 65
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.69 E-value=6.3e-07 Score=91.18 Aligned_cols=196 Identities=13% Similarity=0.094 Sum_probs=111.0
Q ss_pred CccccchHHHHHHHHHHhcCCCcE-EEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGI-IGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIG 213 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~-i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 213 (467)
.+++|.+..++.|.+++..++... +.++|+.|+||||+|+.+++.+. .....+. ...+.....+.+...-+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~-c~~~~~~-------~pCg~C~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLN-CAQGPTA-------TPCGVCESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-cccCCCC-------CcccccHHHHHhhcccC
Confidence 568999999999999998876655 68999999999999999998762 1111100 00000011111110000
Q ss_pred CC-----CCCCCCcCHHHHHHHHHHH-----hcCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEE-EecCChhhh
Q 037625 214 LV-----GDSWKSRSVEEKALDIFRS-----LREKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVV-FTTRFIGVC 280 (467)
Q Consensus 214 ~~-----~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~ii-iTtR~~~~~ 280 (467)
.. .+.......++. ..+.+. ..+++-++|+|+++. ....+.+...+ -....++.+| +||....+.
T Consensus 85 ~~~dvieidaas~~gvd~i-Rel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~L-EEpp~~~~fIL~tte~~kll 162 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDT-RELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIV-EEPPEHLIFIFATTEPEKVL 162 (584)
T ss_pred CCceEEEeccccccCHHHH-HHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHH-hcCCCCeEEEEEeCChHhhH
Confidence 00 000000111111 112221 134566899999973 34555555555 2333455555 455554443
Q ss_pred h-hcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcH-HHHHHHHHh
Q 037625 281 G-SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPL-ALITIGRAM 343 (467)
Q Consensus 281 ~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~~~~l 343 (467)
. ..+....+++.+++.++..+++.+.+...+...+ .+.+..|++.++|.+- +++.+-.++
T Consensus 163 ~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~---~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 163 PTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD---DAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred HHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2 2334568999999999999999887665442222 3556788899999774 444444433
No 66
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.67 E-value=5.7e-07 Score=95.09 Aligned_cols=195 Identities=12% Similarity=0.080 Sum_probs=110.2
Q ss_pred CccccchHHHHHHHHHHhcCCCc-EEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAG-IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIG 213 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~-~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 213 (467)
..+||.+..++.|.+.+..++.. .+.++|+.|+||||+|+.+++.+. ........ ..+.....+.+...-.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~-C~~~~~~~-------pCg~C~sC~~~~~g~~ 86 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLN-CVEGPTST-------PCGECDSCVALAPGGP 86 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhC-cccCCCCC-------CCcccHHHHHHHcCCC
Confidence 46899999999999999887654 478999999999999999998872 11111000 0000000011100000
Q ss_pred CC-----CCCCCCcCHHHHHHHHHHH-----hcCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEE-ecCChhhh
Q 037625 214 LV-----GDSWKSRSVEEKALDIFRS-----LREKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVF-TTRFIGVC 280 (467)
Q Consensus 214 ~~-----~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iii-TtR~~~~~ 280 (467)
.. .+.......++. ..+.+. ..++.-++|||+++. ....+.+...+ .....++.+|+ ||....+.
T Consensus 87 ~~~dv~eidaas~~~Vd~i-R~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~L-EEpP~~~~fIl~tt~~~kLl 164 (824)
T PRK07764 87 GSLDVTEIDAASHGGVDDA-RELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIV-EEPPEHLKFIFATTEPDKVI 164 (824)
T ss_pred CCCcEEEecccccCCHHHH-HHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHH-hCCCCCeEEEEEeCChhhhh
Confidence 00 000000111211 112221 235566899999974 34455555555 33334555555 54444443
Q ss_pred h-hcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcH-HHHHHHHH
Q 037625 281 G-SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPL-ALITIGRA 342 (467)
Q Consensus 281 ~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~~~~ 342 (467)
. ..+....|++.+++.++..+++.+.+...+...+ .+....|++.++|.+. ++..+-++
T Consensus 165 ~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id---~eal~lLa~~sgGdlR~Al~eLEKL 225 (824)
T PRK07764 165 GTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE---PGVLPLVIRAGGGSVRDSLSVLDQL 225 (824)
T ss_pred HHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2 2344568899999999999999887754432222 3456788999999884 33333333
No 67
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.67 E-value=1.4e-06 Score=77.98 Aligned_cols=173 Identities=20% Similarity=0.187 Sum_probs=99.7
Q ss_pred CCccccchHHHHHHHHHHh-----cCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHH
Q 037625 134 ERTVVGLQSQLEQVWRCLA-----EESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDI 208 (467)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~-----~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 208 (467)
-.+|+|.++-++.+.=++. +...-.+.++||+|.||||||.-+++.. ...+....--.+.+..++..+
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em---gvn~k~tsGp~leK~gDlaai---- 97 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL---GVNLKITSGPALEKPGDLAAI---- 97 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh---cCCeEecccccccChhhHHHH----
Confidence 3579999998888776665 2356689999999999999999999988 222211000001111111111
Q ss_pred HHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh---------hhhhhhccCCCCCCCCCce----------
Q 037625 209 GKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER---------VDLTKVGVPLSGPKNTTSK---------- 269 (467)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------~~~~~~~~~l~~~~~~~s~---------- 269 (467)
...|+. .=++.+|++... ...+.+..-.-...++++|
T Consensus 98 -----------------------Lt~Le~-~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 98 -----------------------LTNLEE-GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred -----------------------HhcCCc-CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 111222 235556776521 1122221111011222332
Q ss_pred -EEEecCChhhhhhc--CCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHH
Q 037625 270 -VVFTTRFIGVCGSM--EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIG 340 (467)
Q Consensus 270 -iiiTtR~~~~~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 340 (467)
|=-|||.-.+..-+ ....+.+++.-+.+|..+...+.+.......+ ++.+.+|+++..|-|--..-+.
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~---~~~a~eIA~rSRGTPRIAnRLL 224 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEID---EEAALEIARRSRGTPRIANRLL 224 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC---hHHHHHHHHhccCCcHHHHHHH
Confidence 33588865443222 23456788999999999999988754443222 3678899999999997544443
No 68
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.67 E-value=1.8e-07 Score=83.93 Aligned_cols=162 Identities=16% Similarity=0.149 Sum_probs=94.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL 235 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 235 (467)
...+.|+|+.|+|||.|.+.+++...+ ...-..++|+ +..++...+...+.. .. ...+...+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~-~~~~~~v~y~------~~~~f~~~~~~~~~~-------~~----~~~~~~~~ 95 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQK-QHPGKRVVYL------SAEEFIREFADALRD-------GE----IEEFKDRL 95 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHH-HCTTS-EEEE------EHHHHHHHHHHHHHT-------TS----HHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh-ccccccceee------cHHHHHHHHHHHHHc-------cc----chhhhhhh
Confidence 457899999999999999999998722 2223356666 344555555555432 11 13344444
Q ss_pred cCCcEEEEeCCCCCh---hhh-hhhccCCCCCCCCCceEEEecCChh---------hhhhcCCCcccccCCCCHHHHHHH
Q 037625 236 REKRIVLLLDDIWER---VDL-TKVGVPLSGPKNTTSKVVFTTRFIG---------VCGSMEADRKFLVACLSEKDAWEL 302 (467)
Q Consensus 236 ~~k~~LlVlDdv~~~---~~~-~~~~~~l~~~~~~~s~iiiTtR~~~---------~~~~~~~~~~~~l~~L~~~e~~~l 302 (467)
++ -=+|++||++.. ..| +.+...+......|.++|+|++... +...+.....+++.+++.++..++
T Consensus 96 ~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 96 RS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp CT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred hc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 43 448889999642 222 2222222122345778999996432 223334456789999999999999
Q ss_pred HHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHH
Q 037625 303 FREKVGEETLKSDHDIAELAQIVANECGGLPLALITI 339 (467)
Q Consensus 303 f~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 339 (467)
+.+++.......+ ++++..|++.+.+..-.+..+
T Consensus 175 l~~~a~~~~~~l~---~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 175 LQKKAKERGIELP---EEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHHHTT--S----HHHHHHHHHHTTSSHHHHHHH
T ss_pred HHHHHHHhCCCCc---HHHHHHHHHhhcCCHHHHHHH
Confidence 9998865543332 466667777776655544433
No 69
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.66 E-value=7.8e-07 Score=90.99 Aligned_cols=196 Identities=14% Similarity=0.119 Sum_probs=111.5
Q ss_pred CccccchHHHHHHHHHHhcCCCc-EEEEEccCCCcHHHHHHHHHhcccCCCCCCC--eEEEEEeCCCCCHHHHHHHHHHH
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAG-IIGLYGMGGVGKTTLLTHINNKFLESPTNFD--CVIWVVVSKDLRLEKIQEDIGKK 211 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~-~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~ 211 (467)
..++|.+..++.|.+.+..++.+ .+.++|+.|+||||+|+.+++.+. ...... ...+- ......-.+.|...
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~-c~~~~~~~~~~~~----~cg~c~~C~~i~~g 98 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALN-YEGPDGDGGPTID----LCGVGEHCQAIMEG 98 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhC-cCCccccCCCccc----cCcccHHHHHHhcC
Confidence 56899999999999999887654 689999999999999999998772 111100 00000 00111111111111
Q ss_pred hcCCC---CCCCCcCHHHHHHHHHHHh-----cCCcEEEEeCCCCCh--hhhhhhccCCCCCCCCCceEEE-ecCChhhh
Q 037625 212 IGLVG---DSWKSRSVEEKALDIFRSL-----REKRIVLLLDDIWER--VDLTKVGVPLSGPKNTTSKVVF-TTRFIGVC 280 (467)
Q Consensus 212 l~~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iii-TtR~~~~~ 280 (467)
..... +.......++ +..+.+.+ .+++-++|+|+++.. ...+.+...+ -....++.+|+ ||....+.
T Consensus 99 ~h~Dv~e~~a~s~~gvd~-IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtL-EePp~~~~fIl~tte~~kll 176 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDD-IREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTL-EEPPPHVKFIFATTEIRKVP 176 (598)
T ss_pred CCCceEEecccccCCHHH-HHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHH-HhCCCCeEEEEEeCChhhhh
Confidence 10000 0000111222 11222222 245568999999643 3455555554 23344566655 44444332
Q ss_pred -hhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHH
Q 037625 281 -GSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIG 340 (467)
Q Consensus 281 -~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 340 (467)
...+....+++.+++.++...++.+.+.......+ .+.+..|++.++|.+.-+....
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~---~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE---DEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 22233457889999999999999988765442222 3567889999999986554433
No 70
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.65 E-value=2.3e-07 Score=92.25 Aligned_cols=169 Identities=14% Similarity=0.112 Sum_probs=105.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL 235 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 235 (467)
...+.|+|+.|+|||+|++.+++.. .....-..++|++ ..++...+...++.. ......+.+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l-~~~~~~~~v~yv~------~~~f~~~~~~~l~~~---------~~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYI-ESNFSDLKVSYMS------GDEFARKAVDILQKT---------HKEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHH-HHhCCCCeEEEEE------HHHHHHHHHHHHHHh---------hhHHHHHHHHh
Confidence 3568999999999999999999976 2122233455553 345666666655421 01223344444
Q ss_pred cCCcEEEEeCCCCCh----hhhhhhccCCCCCCCCCceEEEecCChh---------hhhhcCCCcccccCCCCHHHHHHH
Q 037625 236 REKRIVLLLDDIWER----VDLTKVGVPLSGPKNTTSKVVFTTRFIG---------VCGSMEADRKFLVACLSEKDAWEL 302 (467)
Q Consensus 236 ~~k~~LlVlDdv~~~----~~~~~~~~~l~~~~~~~s~iiiTtR~~~---------~~~~~~~~~~~~l~~L~~~e~~~l 302 (467)
.. .-+||+||+... ...+.+...+......+..||+|+.... +...+...-.+.+++++.++..++
T Consensus 205 ~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 205 CQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred cc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence 43 458889999532 2233443333222344557888876332 222233455778999999999999
Q ss_pred HHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHHHH
Q 037625 303 FREKVGEETLKSDHDIAELAQIVANECGGLPLALITIGRA 342 (467)
Q Consensus 303 f~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~ 342 (467)
+.+++...... ..-.++....|+..++|.|-.+.-+...
T Consensus 284 L~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 284 IKKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 99988643311 0122578889999999999877665533
No 71
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=1.3e-06 Score=85.33 Aligned_cols=179 Identities=15% Similarity=0.176 Sum_probs=104.7
Q ss_pred CccccchHHHHHHHHHHhcCCC-cEEEEEccCCCcHHHHHHHHHhcccCC-----CCCCCeEE-EEEeCCCCCHHHHHHH
Q 037625 135 RTVVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTHINNKFLES-----PTNFDCVI-WVVVSKDLRLEKIQED 207 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~-~~i~I~G~~GiGKTtLa~~v~~~~~~~-----~~~f~~~~-wv~~~~~~~~~~~~~~ 207 (467)
.+++|.+...+.+.+.+.++.. +.+.++|++|+||||+|+.+.+..... ...|...+ -++.....+..++ ..
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i-~~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI-RN 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH-HH
Confidence 5689999999999999987654 478899999999999999998876210 01121111 1111111111111 12
Q ss_pred HHHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh--hhhhhhccCCCCCCCCCceEEEec-CChhhh-hhc
Q 037625 208 IGKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER--VDLTKVGVPLSGPKNTTSKVVFTT-RFIGVC-GSM 283 (467)
Q Consensus 208 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iiiTt-R~~~~~-~~~ 283 (467)
+...+... -..+++-++++|+++.. ..++.+...+ ......+.+|++| ....+. ...
T Consensus 96 l~~~~~~~------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~l-e~~~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 96 LIDQVRIP------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTL-EEPPAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred HHHHHhhc------------------cccCCcEEEEEeChhhcCHHHHHHHHHHH-hCCCCceEEEEEeCCcccCCHHHH
Confidence 22211100 01234568999998642 3344444333 2223345555544 333332 222
Q ss_pred CCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHH
Q 037625 284 EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLAL 336 (467)
Q Consensus 284 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 336 (467)
.....+++.+++.++...++...+...+...+ .+.+..++..++|.+-.+
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE---DDALHIIAQKADGALRDA 206 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 33457889999999999999887755442222 367778888999976543
No 72
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=2e-06 Score=86.13 Aligned_cols=178 Identities=13% Similarity=0.187 Sum_probs=105.9
Q ss_pred CccccchHHHHHHHHHHhcCCCc-EEEEEccCCCcHHHHHHHHHhcccCC-CCC-----------------CCeEEEEEe
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAG-IIGLYGMGGVGKTTLLTHINNKFLES-PTN-----------------FDCVIWVVV 195 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~-~i~I~G~~GiGKTtLa~~v~~~~~~~-~~~-----------------f~~~~wv~~ 195 (467)
..++|.+...+.|.+++..+... .+.++|+.|+||||+|+.++..+... ... +...+.+..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eida 95 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDA 95 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeC
Confidence 46799999999999999876544 46789999999999999998876210 000 001111111
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh-----cCCcEEEEeCCCCCh--hhhhhhccCCCCCCCCCc
Q 037625 196 SKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL-----REKRIVLLLDDIWER--VDLTKVGVPLSGPKNTTS 268 (467)
Q Consensus 196 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s 268 (467)
+.. ...+ .+..+.+.. .+++-++|+|+++.. ...+.+...+ ....+.+
T Consensus 96 as~-----------------------~gvd-~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~L-Eepp~~~ 150 (486)
T PRK14953 96 ASN-----------------------RGID-DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTL-EEPPPRT 150 (486)
T ss_pred ccC-----------------------CCHH-HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHH-hcCCCCe
Confidence 111 1111 111222222 346679999999743 3445554444 2223344
Q ss_pred eEEE-ecCChhhhh-hcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHH
Q 037625 269 KVVF-TTRFIGVCG-SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIG 340 (467)
Q Consensus 269 ~iii-TtR~~~~~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 340 (467)
.+|+ ||+...+.. .......+.+.+++.++...++.+.+...+...+ .+.+..|+..++|.+..+....
T Consensus 151 v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id---~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 151 IFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE---EKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 4444 555433322 2233457889999999999999987654442222 3567788899999876444433
No 73
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=3.4e-06 Score=86.66 Aligned_cols=196 Identities=13% Similarity=0.142 Sum_probs=109.5
Q ss_pred CccccchHHHHHHHHHHhcCCCc-EEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAG-IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIG 213 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~-~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 213 (467)
..++|.+..++.|.+++..++.+ .+.++|+.|+||||+|+.+++.+. .....+. ...+.......+...-.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~-c~~~~~~-------~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALN-CEQGLTA-------EPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc-CCCCCCC-------CCCCccHHHHHHhcCCC
Confidence 56899999999999999887654 568999999999999999988762 1111000 00000011111100000
Q ss_pred CC---CCCCCCcCHHHHHHHHHHHh-----cCCcEEEEeCCCCCh--hhhhhhccCCCCCCCCCceEEE-ecCChhhhh-
Q 037625 214 LV---GDSWKSRSVEEKALDIFRSL-----REKRIVLLLDDIWER--VDLTKVGVPLSGPKNTTSKVVF-TTRFIGVCG- 281 (467)
Q Consensus 214 ~~---~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iii-TtR~~~~~~- 281 (467)
.. .+.......++ +..+...+ .+++-++|+|+++.. ...+.+...+ -....++.+|+ ||....+..
T Consensus 88 ~d~~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~L-Eepp~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 88 VDVFEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTL-EEPPPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred CCeeeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHH-HcCCCCeEEEEEeCChhhhhHH
Confidence 00 00000011111 12222222 245568999999743 3455555444 22334555554 555444432
Q ss_pred hcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCc-HHHHHHHHHh
Q 037625 282 SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLP-LALITIGRAM 343 (467)
Q Consensus 282 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P-lai~~~~~~l 343 (467)
..+....+++.+++.++....+...+...+...+ .+.+..|++.++|.. .++..+-..+
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~---~~al~~la~~a~G~lr~al~~Ldqli 225 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS---DAALALVARKGDGSMRDSLSTLDQVL 225 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2334467889999999999988877654432222 356778999999966 4555554443
No 74
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.59 E-value=2.1e-07 Score=84.69 Aligned_cols=93 Identities=19% Similarity=0.134 Sum_probs=62.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCC--CCHHHHHHHHHHHhcCCCCCCCCc----CHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD--LRLEKIQEDIGKKIGLVGDSWKSR----SVEEKA 228 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~----~~~~~~ 228 (467)
....++|.|++|+|||||++.++++. . ..+|+..+|+.+... .++.++++.+...+-...-+.+.. ......
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l-~-~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAI-T-KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-c-cccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 44578999999999999999999988 3 238999999997766 789999999843332211110110 011122
Q ss_pred HHHHHH-hcCCcEEEEeCCCCC
Q 037625 229 LDIFRS-LREKRIVLLLDDIWE 249 (467)
Q Consensus 229 ~~l~~~-l~~k~~LlVlDdv~~ 249 (467)
.....+ -.++++++++|++..
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHH
Confidence 222222 247899999999953
No 75
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.59 E-value=2.4e-07 Score=90.32 Aligned_cols=171 Identities=20% Similarity=0.261 Sum_probs=99.6
Q ss_pred CccccchHHHHHHHHHHhc-------------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCH
Q 037625 135 RTVVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 201 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~-------------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 201 (467)
..+.|++..+++|.+.+.. ...+-+.|+|++|+|||++|+.+++.. ...| +.+. .
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~----~ 189 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVV----G 189 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecc----h
Confidence 4578999999999887642 124468999999999999999999987 3333 2221 1
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh-cCCcEEEEeCCCCChh----------------hhhhhccCCCC-C
Q 037625 202 EKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL-REKRIVLLLDDIWERV----------------DLTKVGVPLSG-P 263 (467)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------------~~~~~~~~l~~-~ 263 (467)
..+.... .+ ........+.+.. ...+.+|+|||++... .+..+...+.. .
T Consensus 190 ~~l~~~~---~g---------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 SELVRKY---IG---------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred HHHHHHh---hh---------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 1111111 00 0111222233322 3467899999986420 11122111100 1
Q ss_pred CCCCceEEEecCChhh-----hhhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCc
Q 037625 264 KNTTSKVVFTTRFIGV-----CGSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLP 333 (467)
Q Consensus 264 ~~~~s~iiiTtR~~~~-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 333 (467)
...+..||.||..... ......+..+.++..+.++..++|...+.........+ ...+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 2346778888874432 21112355788999999999999998876544222222 346777777764
No 76
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=2.6e-06 Score=87.40 Aligned_cols=199 Identities=15% Similarity=0.147 Sum_probs=109.9
Q ss_pred CccccchHHHHHHHHHHhcCCCc-EEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEE-eCCCCCHHHHHHHHHHHh
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAG-IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVV-VSKDLRLEKIQEDIGKKI 212 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~-~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l 212 (467)
..++|.+..++.|.+.+..++.. .+.++|+.|+||||+|+.+++.+ ......+...|.. .....+.....+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L-~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAV-NCQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh-CCCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 56899999999999999877654 48899999999999999999887 2111111000110 001111111111111100
Q ss_pred cCCC---CCCCCcCHHHHHHHHHHHh-----cCCcEEEEeCCCCCh--hhhhhhccCCCCCCCCCceEE-EecCChhhh-
Q 037625 213 GLVG---DSWKSRSVEEKALDIFRSL-----REKRIVLLLDDIWER--VDLTKVGVPLSGPKNTTSKVV-FTTRFIGVC- 280 (467)
Q Consensus 213 ~~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ii-iTtR~~~~~- 280 (467)
.... +.......++.. .+.+.+ .+++-++|+|+++.. ...+.+...+ ......+.+| +|++...+.
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir-~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~L-EePp~~tv~IL~t~~~~kLl~ 172 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIR-QLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTL-EEPPPHAIFIFATTELHKIPA 172 (620)
T ss_pred CCCeEEecccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHH-hCCCCCeEEEEEeCChhhhhH
Confidence 0000 000011122222 222222 345568899998643 3455555555 2223345544 454444443
Q ss_pred hhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcH-HHHHH
Q 037625 281 GSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPL-ALITI 339 (467)
Q Consensus 281 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~ 339 (467)
........+++.+++.++....+.+.+...+...+ .+.+..|++.++|..- ++..+
T Consensus 173 TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~---~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 173 TIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID---ADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred HHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHH
Confidence 22344568999999999999988886654332222 3667889999999665 44433
No 77
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.55 E-value=3.8e-06 Score=84.31 Aligned_cols=193 Identities=11% Similarity=0.097 Sum_probs=108.6
Q ss_pred CccccchHHHHHHHHHHhcCCCc-EEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAG-IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIG 213 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~-~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 213 (467)
..++|-+...+.|...+..++.+ .+.++|+.|+||||+|+.+++.+.. ....+. .......-...+.....
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c-~~~~~~-------~pC~~C~~C~~~~~~~h 85 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVC-EQGPSS-------TPCDTCIQCQSALENRH 85 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcC-CCCCCC-------CCCcccHHHHHHhhcCC
Confidence 56899999999999999877665 5689999999999999998887621 111000 00000000000000000
Q ss_pred CC---CCCCCCcCHHHHHHHHHHH----hcCCcEEEEeCCCCCh--hhhhhhccCCCCCCCCCceEEEecCCh-hhh-hh
Q 037625 214 LV---GDSWKSRSVEEKALDIFRS----LREKRIVLLLDDIWER--VDLTKVGVPLSGPKNTTSKVVFTTRFI-GVC-GS 282 (467)
Q Consensus 214 ~~---~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iiiTtR~~-~~~-~~ 282 (467)
.. .+.......++....+... ..+++-++|+|+++.. ...+.+...+ -..+..+.+|++|.+. .+. ..
T Consensus 86 ~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~L-EEpp~~t~FIL~ttd~~kL~~tI 164 (535)
T PRK08451 86 IDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTL-EEPPSYVKFILATTDPLKLPATI 164 (535)
T ss_pred CeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHH-hhcCCceEEEEEECChhhCchHH
Confidence 00 0000001112222211110 1145668999999743 4445554444 2234556666666543 221 12
Q ss_pred cCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHH
Q 037625 283 MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITI 339 (467)
Q Consensus 283 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 339 (467)
.+....+++.+++.++....+.+.+...+...+ .+.+..|++.++|.+.-+...
T Consensus 165 ~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~---~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 165 LSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE---PEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred HhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHH
Confidence 233468899999999999999887765442222 366789999999988554443
No 78
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=3.7e-06 Score=86.79 Aligned_cols=193 Identities=16% Similarity=0.157 Sum_probs=110.7
Q ss_pred CccccchHHHHHHHHHHhcCCC-cEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 037625 135 RTVVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIG 213 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~-~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 213 (467)
..++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+++.+ ....... .....+.....+.+.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l-~c~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAV-NCTTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh-cCCCCCC------CCCCCccCHHHHHHhcCCC
Confidence 5689999999999999987654 456899999999999999999877 1111000 0011112223333332211
Q ss_pred CCC---CCCCCcCHHHHHHHHHHHh-----cCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEEec-CChhhhh-
Q 037625 214 LVG---DSWKSRSVEEKALDIFRSL-----REKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVFTT-RFIGVCG- 281 (467)
Q Consensus 214 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iiiTt-R~~~~~~- 281 (467)
... +.......++ +..+.+.+ .+++-++|+|+++. ....+.+...+ ......+.+|++| ....+..
T Consensus 89 ~d~~~i~~~~~~~vd~-ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~L-Eepp~~tv~Il~t~~~~kll~t 166 (585)
T PRK14950 89 VDVIEMDAASHTSVDD-AREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTL-EEPPPHAIFILATTEVHKVPAT 166 (585)
T ss_pred CeEEEEeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHH-hcCCCCeEEEEEeCChhhhhHH
Confidence 100 0000111222 12222222 24567999999964 34455554444 2223455565555 3333322
Q ss_pred hcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHH
Q 037625 282 SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITI 339 (467)
Q Consensus 282 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 339 (467)
..+....+.+.+++.++....+...+...+...+ .+.+..|++.++|.+..+...
T Consensus 167 I~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~---~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 167 ILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE---PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 2233457789999999999998887755442222 356779999999998655443
No 79
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.53 E-value=2.8e-06 Score=87.61 Aligned_cols=188 Identities=13% Similarity=0.146 Sum_probs=107.7
Q ss_pred CccccchHHHHHHHHHHhcCCC-cEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 037625 135 RTVVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIG 213 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~-~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 213 (467)
..++|.+..++.|.+++..++. +.+.++|+.|+||||+|+.++..+. .....+ .+ .+..-.... .+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~Ln-C~~~~~--~~-------~pC~~C~~~---~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALN-CSHKTD--LL-------EPCQECIEN---VN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc-ccccCC--CC-------CchhHHHHh---hc
Confidence 4689999999999999987654 4568999999999999999988761 111000 00 000000000 00
Q ss_pred CCC-----CCCCCcCHHHHHHHHHHHh-----cCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCce-EEEecCChhhh
Q 037625 214 LVG-----DSWKSRSVEEKALDIFRSL-----REKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSK-VVFTTRFIGVC 280 (467)
Q Consensus 214 ~~~-----~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~-iiiTtR~~~~~ 280 (467)
... +.......++ ++.+.+.+ .+++-++|+|+++. ...+..+...+ -..+..+. |++|++...+.
T Consensus 85 ~~~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtL-EEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTL-EEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred CCCcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHh-hcCCCceEEEEEcCChhhhh
Confidence 000 0000011111 22232222 35667999999963 34455555544 22233444 44555555443
Q ss_pred h-hcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcH-HHHHHH
Q 037625 281 G-SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPL-ALITIG 340 (467)
Q Consensus 281 ~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~~ 340 (467)
. .......+++.+++.++....+...+...+...+ .+.+..|++.++|.+- |+..+-
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id---~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENISYE---KNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 2 2334468899999999999999886644332222 3557789999999764 444443
No 80
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=4.2e-06 Score=86.30 Aligned_cols=178 Identities=13% Similarity=0.152 Sum_probs=107.7
Q ss_pred CccccchHHHHHHHHHHhcCCCc-EEEEEccCCCcHHHHHHHHHhcccCC--------------------CCCCCeEEEE
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAG-IIGLYGMGGVGKTTLLTHINNKFLES--------------------PTNFDCVIWV 193 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~-~i~I~G~~GiGKTtLa~~v~~~~~~~--------------------~~~f~~~~wv 193 (467)
..++|.+..++.|.+++..+..+ .+.++|+.|+||||+|+.++..+.-. ..+|+.. .+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~-~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIH-EL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceE-Ee
Confidence 56899999999999999887655 47899999999999999988876200 0122211 11
Q ss_pred EeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEE
Q 037625 194 VVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVV 271 (467)
Q Consensus 194 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~ii 271 (467)
+........++. .++.++... -..+++-++|+|+++. ....+.+...+ .....++.+|
T Consensus 96 d~~~~~~vd~Ir-~li~~~~~~------------------P~~~~~KVvIIdea~~Ls~~a~naLLK~L-Eepp~~tifI 155 (614)
T PRK14971 96 DAASNNSVDDIR-NLIEQVRIP------------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTL-EEPPSYAIFI 155 (614)
T ss_pred cccccCCHHHHH-HHHHHHhhC------------------cccCCcEEEEEECcccCCHHHHHHHHHHH-hCCCCCeEEE
Confidence 111111111111 111111100 0123456889999874 34455665555 2333455555
Q ss_pred E-ecCChhhhh-hcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHH
Q 037625 272 F-TTRFIGVCG-SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLAL 336 (467)
Q Consensus 272 i-TtR~~~~~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 336 (467)
+ ||+...+.. ..+....+++.+++.++...++...+...+...+ .+.+..|+..++|..--+
T Consensus 156 L~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~---~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 156 LATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE---PEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 4 555444432 2344567899999999999999887655442222 256788999999977543
No 81
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.52 E-value=1.6e-06 Score=84.98 Aligned_cols=171 Identities=20% Similarity=0.286 Sum_probs=98.3
Q ss_pred CccccchHHHHHHHHHHhc-------------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCH
Q 037625 135 RTVVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 201 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~-------------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 201 (467)
+.+.|++..+++|.+.+.. ...+-|.++|++|+|||++|+.+++.. ...| +.++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~~-----i~v~~---- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG---- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCCE-----EEeeh----
Confidence 3578999999999887632 234568999999999999999999986 2222 22211
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh-cCCcEEEEeCCCCCh------------hh----hhhhccCCCC-C
Q 037625 202 EKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL-REKRIVLLLDDIWER------------VD----LTKVGVPLSG-P 263 (467)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~------------~~----~~~~~~~l~~-~ 263 (467)
.++.... . . ........+.+.. ...+.+|+|||++.. .. +..+...+.. .
T Consensus 199 ~~l~~~~---~--------g-~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 SELVQKF---I--------G-EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred HHHhHhh---c--------c-chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 1111110 0 0 1112223333332 346789999999642 01 1111111100 1
Q ss_pred CCCCceEEEecCChhhh-h-hc---CCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCc
Q 037625 264 KNTTSKVVFTTRFIGVC-G-SM---EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLP 333 (467)
Q Consensus 264 ~~~~s~iiiTtR~~~~~-~-~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 333 (467)
...+..||.||...... . .. ..+..+.+++.+.++-.++|..++.........+ ...+++.+.|.-
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGAS 337 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCC
Confidence 22356777777654321 1 11 2345788999999999999998876544332222 345666777643
No 82
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.51 E-value=1.2e-05 Score=82.05 Aligned_cols=191 Identities=14% Similarity=0.122 Sum_probs=108.9
Q ss_pred CccccchHHHHHHHHHHhcCCCc-EEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAG-IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIG 213 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~-~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 213 (467)
..++|.+..++.|..++.+++.+ .+.++|+.|+||||+|+.+++.+. ........ .+... ..-+.+...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~-c~~~~~~~---pC~~C----~~C~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLN-CVNGPTPM---PCGEC----SSCKSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc-cccCCCCC---CCccc----hHHHHHHcCCC
Confidence 56899999999999999877654 588999999999999999998872 11111000 00000 00011111000
Q ss_pred CC---CCCCCCcCHHHHHHHHHHH-----hcCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEEec-CChhhhh-
Q 037625 214 LV---GDSWKSRSVEEKALDIFRS-----LREKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVFTT-RFIGVCG- 281 (467)
Q Consensus 214 ~~---~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iiiTt-R~~~~~~- 281 (467)
.. .++......++.. .+.+. ..+++-++|+|+++. ...++.+...+ ...+..+.+|++| ....+..
T Consensus 88 ~dv~~idgas~~~vddIr-~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~L-Eepp~~~vfI~~tte~~kL~~t 165 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVR-QIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTI-EEPPPYIVFIFATTEVHKLPAT 165 (563)
T ss_pred CCeEEecCcccCCHHHHH-HHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhh-ccCCCCEEEEEecCChHHhHHH
Confidence 00 0000011122221 12211 235666899999964 34556665555 3334455565554 4333322
Q ss_pred hcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHH
Q 037625 282 SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALIT 338 (467)
Q Consensus 282 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~ 338 (467)
..+....+++.+++.++....+.+.+...+...+ .+.+..|++.++|.+-.+..
T Consensus 166 I~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id---~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 166 IKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE---DEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 2233456889999999999999887654332222 36677899999998854433
No 83
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.50 E-value=1.2e-06 Score=79.23 Aligned_cols=183 Identities=15% Similarity=0.203 Sum_probs=113.0
Q ss_pred CCCccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCe-EEEEEeCCCCCHHHHHHHHHHH
Q 037625 133 TERTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDC-VIWVVVSKDLRLEKIQEDIGKK 211 (467)
Q Consensus 133 ~~~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~ 211 (467)
.-++++|.+..+.-|.+.+.....+....|||+|+|||+-|..++..+ ...+.|.+ ++-.+.|......-+-..+
T Consensus 34 t~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGisvvr~Ki--- 109 (346)
T KOG0989|consen 34 TFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGISVVREKI--- 109 (346)
T ss_pred cHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccccccccchhhhh---
Confidence 346689999999999999988778899999999999999999999887 33344544 3334444443322110000
Q ss_pred hcCCCCCCCCcCHHHHHHHHHHHh--cCCc-EEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEEecCC-hhhh-hhcC
Q 037625 212 IGLVGDSWKSRSVEEKALDIFRSL--REKR-IVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVFTTRF-IGVC-GSME 284 (467)
Q Consensus 212 l~~~~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iiiTtR~-~~~~-~~~~ 284 (467)
.+...+........ ..++ -++|||+++. .+.|..+.... ......++.|+.+.. ..+. ...+
T Consensus 110 ----------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~m-E~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 110 ----------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTM-EDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred ----------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHH-hccccceEEEEEcCChhhCChHHHh
Confidence 11111110000000 0123 4889999975 36677776655 334455665544432 2221 1122
Q ss_pred CCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCc
Q 037625 285 ADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLP 333 (467)
Q Consensus 285 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 333 (467)
.-..|..++|..++...-++..+...+..-++ +..+.|++.++|--
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~---~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVDIDD---DALKLIAKISDGDL 224 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCCCCH---HHHHHHHHHcCCcH
Confidence 33568899999999999888888766644433 56778999998843
No 84
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.49 E-value=8.5e-06 Score=74.88 Aligned_cols=201 Identities=16% Similarity=0.101 Sum_probs=118.3
Q ss_pred Cccccch---HHHHHHHHHHhcC---CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCC----CeEEEEEeCCCCCHHHH
Q 037625 135 RTVVGLQ---SQLEQVWRCLAEE---SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNF----DCVIWVVVSKDLRLEKI 204 (467)
Q Consensus 135 ~~~vGr~---~~~~~l~~~L~~~---~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f----~~~~wv~~~~~~~~~~~ 204 (467)
+.+||-. ..++.|.+++..+ ..+.+.|+|.+|.|||++++.+...... ...- -.++.+.....++...+
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~-~~d~~~~~~PVv~vq~P~~p~~~~~ 112 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPP-QSDEDAERIPVVYVQMPPEPDERRF 112 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCC-CCCCCCccccEEEEecCCCCChHHH
Confidence 3456643 3345566666543 4567999999999999999999976621 1111 25778888999999999
Q ss_pred HHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcC-CcEEEEeCCCCCh---------hhhhhhccCCCCCCCCCceEEEec
Q 037625 205 QEDIGKKIGLVGDSWKSRSVEEKALDIFRSLRE-KRIVLLLDDIWER---------VDLTKVGVPLSGPKNTTSKVVFTT 274 (467)
Q Consensus 205 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~---------~~~~~~~~~l~~~~~~~s~iiiTt 274 (467)
+..|+.+++.+... ..+...........++. +--+||+|++.+. ..++.+. .+ ...-.=+-|.+-|
T Consensus 113 Y~~IL~~lgaP~~~--~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK-~L-~NeL~ipiV~vGt 188 (302)
T PF05621_consen 113 YSAILEALGAPYRP--RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALK-FL-GNELQIPIVGVGT 188 (302)
T ss_pred HHHHHHHhCcccCC--CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHH-HH-hhccCCCeEEecc
Confidence 99999999987643 33444555555555544 4569999999652 1122211 11 1111233455555
Q ss_pred CChhhhhh-----cCCCcccccCCCCH-HHHHHHHHHHhCCC--CCCCChhHHHHHHHHHHHhCCCcHHHHHHH
Q 037625 275 RFIGVCGS-----MEADRKFLVACLSE-KDAWELFREKVGEE--TLKSDHDIAELAQIVANECGGLPLALITIG 340 (467)
Q Consensus 275 R~~~~~~~-----~~~~~~~~l~~L~~-~e~~~lf~~~~~~~--~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 340 (467)
++-.-+-. -+....+.++.... +|...|+...-..- ...+.-...+++..|...++|+.--+..+-
T Consensus 189 ~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll 262 (302)
T PF05621_consen 189 REAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLL 262 (302)
T ss_pred HHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHH
Confidence 53222110 01123555666554 44455554432111 112222346889999999999876655443
No 85
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.48 E-value=6.2e-06 Score=82.17 Aligned_cols=180 Identities=14% Similarity=0.148 Sum_probs=105.8
Q ss_pred CccccchHHHHHHHHHHhcCCC-cEEEEEccCCCcHHHHHHHHHhcccCCCC--------------------CCCeEEEE
Q 037625 135 RTVVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPT--------------------NFDCVIWV 193 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~-~~i~I~G~~GiGKTtLa~~v~~~~~~~~~--------------------~f~~~~wv 193 (467)
.+++|.+..++.|.+++..+.. +.+.++|+.|+||||+|+.+++.+..... +++ .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~i 95 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLEI 95 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEEe
Confidence 5689999999999999987765 45789999999999999999887621100 011 0111
Q ss_pred EeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH-HhcCCcEEEEeCCCCCh--hhhhhhccCCCCCCCCCceE
Q 037625 194 VVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFR-SLREKRIVLLLDDIWER--VDLTKVGVPLSGPKNTTSKV 270 (467)
Q Consensus 194 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~i 270 (467)
.........+ ..+....+.. -..+++-++|+|+++.. ...+.+...+ .....++.+
T Consensus 96 ~g~~~~gid~--------------------ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~l-Eep~~~~~~ 154 (451)
T PRK06305 96 DGASHRGIED--------------------IRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTL-EEPPQHVKF 154 (451)
T ss_pred eccccCCHHH--------------------HHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHh-hcCCCCceE
Confidence 1000001111 1111111110 11256778999998642 3344444444 222345556
Q ss_pred EEec-CChhhhh-hcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcH-HHHHH
Q 037625 271 VFTT-RFIGVCG-SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPL-ALITI 339 (467)
Q Consensus 271 iiTt-R~~~~~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~ 339 (467)
|++| +...+.. .......+++.+++.++....+...+...+...+ .+.+..|++.++|.+- ++..+
T Consensus 155 Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~---~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 155 FLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETS---REALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 6555 3333322 2233457899999999999999887654332222 3567889999999764 44443
No 86
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.48 E-value=2.8e-06 Score=78.76 Aligned_cols=155 Identities=14% Similarity=0.133 Sum_probs=79.9
Q ss_pred ccccchHHHHHHHHHHh---------c------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCC
Q 037625 136 TVVGLQSQLEQVWRCLA---------E------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLR 200 (467)
Q Consensus 136 ~~vGr~~~~~~l~~~L~---------~------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 200 (467)
.++|.+..+++|.+... . +....+.++|++|+||||+|+.+++.+... +.-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~-~~~~~~~~v~~~~~-- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEM-NVLSKGHLIEVERA-- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhc-CcccCCceEEecHH--
Confidence 47888877766654321 0 134568899999999999999998765211 11111112222221
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh----------hhhhhhccCCCCCCCCCceE
Q 037625 201 LEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER----------VDLTKVGVPLSGPKNTTSKV 270 (467)
Q Consensus 201 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------~~~~~~~~~l~~~~~~~s~i 270 (467)
++... . ..... .....+.+.. ...+|++|+++.. ...+.+...+ ........+
T Consensus 84 --~l~~~----~-------~g~~~-~~~~~~~~~a--~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~-e~~~~~~~v 146 (261)
T TIGR02881 84 --DLVGE----Y-------IGHTA-QKTREVIKKA--LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGM-EDNRNEFVL 146 (261)
T ss_pred --Hhhhh----h-------ccchH-HHHHHHHHhc--cCCEEEEechhhhccCCccchHHHHHHHHHHHH-hccCCCEEE
Confidence 11111 0 00111 1111222222 2348899999641 2233333333 222333455
Q ss_pred EEecCChhhh-------hhc-CCCcccccCCCCHHHHHHHHHHHhCCC
Q 037625 271 VFTTRFIGVC-------GSM-EADRKFLVACLSEKDAWELFREKVGEE 310 (467)
Q Consensus 271 iiTtR~~~~~-------~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~ 310 (467)
|+++...... ... .....+.+++++.+|..+++.+.+...
T Consensus 147 ila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 147 ILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred EecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHc
Confidence 5555432221 011 123467899999999999999887543
No 87
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.47 E-value=8.4e-06 Score=83.40 Aligned_cols=189 Identities=15% Similarity=0.110 Sum_probs=106.0
Q ss_pred CccccchHHHHHHHHHHhcCCC-cEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 037625 135 RTVVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIG 213 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~-~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 213 (467)
..++|.+...+.|.+++..++. +.+.++|+.|+||||+|+.+++.+. .....+ ..+.+.......+.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~-c~~~~~-------~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVN-CLNPPD-------GEPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC-------CCCCCccHHHHHHhcCCC
Confidence 5689999999999999987654 4567899999999999999988762 111100 001111111111111100
Q ss_pred CCC---CCCCCcCHHHHHHHHHHH-----hcCCcEEEEeCCCCCh--hhhhhhccCCCCCCCCCceEEE-ecCChhhhh-
Q 037625 214 LVG---DSWKSRSVEEKALDIFRS-----LREKRIVLLLDDIWER--VDLTKVGVPLSGPKNTTSKVVF-TTRFIGVCG- 281 (467)
Q Consensus 214 ~~~---~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iii-TtR~~~~~~- 281 (467)
... +.......+ .+..+... ..++.-++|+|+++.. ..+..+...+ .....++.+|+ ||....+..
T Consensus 88 ~dv~eidaas~~~vd-~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtL-Eepp~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 88 MDVIEIDAASNNGVD-EIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTL-EEPPAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCeEEeeccccCCHH-HHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHh-cCCCCCeEEEEEeCChhhCcHH
Confidence 000 000001111 11222222 1346678899999743 4455555554 22233444454 554443322
Q ss_pred hcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHH
Q 037625 282 SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLAL 336 (467)
Q Consensus 282 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 336 (467)
..+....+.+.+++.++....+...+...+...+ .+.+..|++.++|.+.-+
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~---~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE---DEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 2233456789999999999999887754432222 355778888888877533
No 88
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.45 E-value=4.7e-07 Score=86.04 Aligned_cols=91 Identities=18% Similarity=0.143 Sum_probs=61.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCC--CHHHHHHHHHHHhcCCCCCCCCcCHH------H
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL--RLEKIQEDIGKKIGLVGDSWKSRSVE------E 226 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~------~ 226 (467)
.....+|+|++|+|||||++.+++.. . ..+|+.++|+.+.+.. ++.++++.+...+-.+.- +..... .
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I-~-~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~--d~~~~~~~~~a~~ 243 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSI-T-TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTF--DEPAERHVQVAEM 243 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHH-H-hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECC--CCCHHHHHHHHHH
Confidence 34568899999999999999999998 3 2389999999998877 788888888643222211 111111 1
Q ss_pred HHHHHHHH-hcCCcEEEEeCCCCC
Q 037625 227 KALDIFRS-LREKRIVLLLDDIWE 249 (467)
Q Consensus 227 ~~~~l~~~-l~~k~~LlVlDdv~~ 249 (467)
..+..... -.++.+||++|++..
T Consensus 244 ~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 244 VIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHcCCCEEEEEEChHH
Confidence 11111111 257999999999953
No 89
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.45 E-value=1.7e-06 Score=86.82 Aligned_cols=182 Identities=19% Similarity=0.174 Sum_probs=105.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL 235 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 235 (467)
...+.|+|++|+|||+|++.+++... ....-..++|++. .++...+...+.. ... ..+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~-~~~~~~~v~yi~~------~~~~~~~~~~~~~-------~~~----~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYIL-EKNPNAKVVYVTS------EKFTNDFVNALRN-------NTM----EEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEEH------HHHHHHHHHHHHc-------CcH----HHHHHHH
Confidence 35789999999999999999999872 2222334556643 3334444444421 111 2333344
Q ss_pred cCCcEEEEeCCCCCh----hhhhhhccCCCCCCCCCceEEEecCChh---------hhhhcCCCcccccCCCCHHHHHHH
Q 037625 236 REKRIVLLLDDIWER----VDLTKVGVPLSGPKNTTSKVVFTTRFIG---------VCGSMEADRKFLVACLSEKDAWEL 302 (467)
Q Consensus 236 ~~k~~LlVlDdv~~~----~~~~~~~~~l~~~~~~~s~iiiTtR~~~---------~~~~~~~~~~~~l~~L~~~e~~~l 302 (467)
+ +.-+|+|||++.. ...+.+...+......+..+|+||.... +...+.....+++++++.++-..+
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 4 3458999999632 1122332222111223456777776432 122333445788999999999999
Q ss_pred HHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHHHHhc-------cCCCHHHHHHHHHHH
Q 037625 303 FREKVGEETLKSDHDIAELAQIVANECGGLPLALITIGRAMA-------YRKKAEQWRRAIEEL 359 (467)
Q Consensus 303 f~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l~-------~~~~~~~~~~~l~~l 359 (467)
+.+.+.......+ +++...|++.+.|..-.+.-+...+. ..-+....+.++..+
T Consensus 289 l~~~~~~~~~~l~---~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 289 LKKKAEEEGIDLP---DEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 9998865332223 36788899999988764433222221 113555666666554
No 90
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=9.7e-06 Score=83.65 Aligned_cols=194 Identities=13% Similarity=0.097 Sum_probs=108.9
Q ss_pred CccccchHHHHHHHHHHhcCCC-cEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 037625 135 RTVVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIG 213 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~-~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 213 (467)
..++|.+..++.|..++..++. +.+.++|+.|+||||+|+.+++.+. ....... ........+..+.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~-c~~~~~~-----~~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN-CLNSDKP-----TPEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc-CCCcCCC-----CCCCCcccHHHHHHhcCCC
Confidence 4679999999999999987653 6788999999999999999998872 1111000 0011111222222222211
Q ss_pred CCC---CCCCCcCHHHHHHHHHHHh-----cCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEE-ecCChhhh-h
Q 037625 214 LVG---DSWKSRSVEEKALDIFRSL-----REKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVF-TTRFIGVC-G 281 (467)
Q Consensus 214 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iii-TtR~~~~~-~ 281 (467)
... +.......++. +.+...+ .+++-++|+|+++. ....+.+...+ -.....+.+|+ |+....+. .
T Consensus 90 ~D~~ei~~~~~~~vd~I-Reii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~L-EePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 90 LDVIEIDAASNTGVDNI-RELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTL-EEPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred ccEEEEeccccCCHHHH-HHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHH-hcCCcCeEEEEEeCChhhhhHH
Confidence 100 00001112122 2222222 24566899999974 34455555555 22233455554 44333332 2
Q ss_pred hcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHH
Q 037625 282 SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITI 339 (467)
Q Consensus 282 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 339 (467)
.......+++.+++.++....+...+.......+ .+.+..|++.++|.+..+..+
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is---~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE---PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 2233456788899999988888876654332222 255788999999988654433
No 91
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.44 E-value=1.5e-06 Score=86.47 Aligned_cols=183 Identities=16% Similarity=0.101 Sum_probs=105.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL 235 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 235 (467)
...+.|+|++|+|||+|++.+++.. .....-..++|++. .++...+...+.. ... ..+.+.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l-~~~~~~~~v~yi~~------~~f~~~~~~~~~~-------~~~----~~f~~~~ 191 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYV-VQNEPDLRVMYITS------EKFLNDLVDSMKE-------GKL----NEFREKY 191 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH-HHhCCCCeEEEEEH------HHHHHHHHHHHhc-------ccH----HHHHHHH
Confidence 4569999999999999999999987 21122235667643 4555555555431 111 2233344
Q ss_pred cCCcEEEEeCCCCCh---h-hhhhhccCCCCCCCCCceEEEecC-Chhhh--------hhcCCCcccccCCCCHHHHHHH
Q 037625 236 REKRIVLLLDDIWER---V-DLTKVGVPLSGPKNTTSKVVFTTR-FIGVC--------GSMEADRKFLVACLSEKDAWEL 302 (467)
Q Consensus 236 ~~k~~LlVlDdv~~~---~-~~~~~~~~l~~~~~~~s~iiiTtR-~~~~~--------~~~~~~~~~~l~~L~~~e~~~l 302 (467)
..+.-+|++||+... . ....+...+......+..||+||. .+.-. ..+.....+.+++.+.+.-.++
T Consensus 192 ~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 192 RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 344668999999632 1 112222222111233457888874 33221 1223345778999999999999
Q ss_pred HHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHHHHh------cc-CCCHHHHHHHHHHH
Q 037625 303 FREKVGEETLKSDHDIAELAQIVANECGGLPLALITIGRAM------AY-RKKAEQWRRAIEEL 359 (467)
Q Consensus 303 f~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l------~~-~~~~~~~~~~l~~l 359 (467)
+.+.+.......+ .++...|++.+.|..-.+.-+...| .+ .-+....+.++..+
T Consensus 272 L~~~~~~~~~~l~---~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 272 ARKMLEIEHGELP---EEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred HHHHHHhcCCCCC---HHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 9998765432332 4677888888888655444332222 11 13555555555544
No 92
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.43 E-value=6.9e-06 Score=83.13 Aligned_cols=159 Identities=20% Similarity=0.147 Sum_probs=96.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLR 236 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 236 (467)
..+.|+|..|+|||.|++.+++.... ......++|++ ..++...+...+.. .. ...+.+.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~-~~~g~~V~Yit------aeef~~el~~al~~-------~~----~~~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARR-LYPGTRVRYVS------SEEFTNEFINSIRD-------GK----GDSFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEee------HHHHHHHHHHHHHh-------cc----HHHHHHHhh
Confidence 45899999999999999999998721 11223456664 34444444444321 11 122333333
Q ss_pred CCcEEEEeCCCCCh---hh-hhhhccCCCCCCCCCceEEEecCCh---------hhhhhcCCCcccccCCCCHHHHHHHH
Q 037625 237 EKRIVLLLDDIWER---VD-LTKVGVPLSGPKNTTSKVVFTTRFI---------GVCGSMEADRKFLVACLSEKDAWELF 303 (467)
Q Consensus 237 ~k~~LlVlDdv~~~---~~-~~~~~~~l~~~~~~~s~iiiTtR~~---------~~~~~~~~~~~~~l~~L~~~e~~~lf 303 (467)
+ .=+|||||+... .. -+.+...+......+..|||||+.. .+...+.....+.|.+.+.+.-.+++
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 3 357889999632 11 1233333322233456788888742 22333445667899999999999999
Q ss_pred HHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHH
Q 037625 304 REKVGEETLKSDHDIAELAQIVANECGGLPLALI 337 (467)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~ 337 (467)
.+++.......+ .+++..|++.+.+..-.+.
T Consensus 456 ~kka~~r~l~l~---~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 456 RKKAVQEQLNAP---PEVLEFIASRISRNIRELE 486 (617)
T ss_pred HHHHHhcCCCCC---HHHHHHHHHhccCCHHHHH
Confidence 998876553333 4677788888777654444
No 93
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.42 E-value=3e-06 Score=83.98 Aligned_cols=160 Identities=20% Similarity=0.177 Sum_probs=94.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL 235 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 235 (467)
...+.|+|++|+|||+|++.+++... ....-..++|++ ..++...+...+... . ...+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~-~~~~~~~v~yi~------~~~~~~~~~~~~~~~-------~----~~~~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEIL-ENNPNAKVVYVS------SEKFTNDFVNALRNN-------K----MEEFKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH-HhCCCCcEEEEE------HHHHHHHHHHHHHcC-------C----HHHHHHHH
Confidence 35689999999999999999999872 222223456664 334444555444311 1 12233333
Q ss_pred cCCcEEEEeCCCCCh----hhhhhhccCCCCCCCCCceEEEecCCh-h--------hhhhcCCCcccccCCCCHHHHHHH
Q 037625 236 REKRIVLLLDDIWER----VDLTKVGVPLSGPKNTTSKVVFTTRFI-G--------VCGSMEADRKFLVACLSEKDAWEL 302 (467)
Q Consensus 236 ~~k~~LlVlDdv~~~----~~~~~~~~~l~~~~~~~s~iiiTtR~~-~--------~~~~~~~~~~~~l~~L~~~e~~~l 302 (467)
++ .-+|+|||++.. ...+.+...+......+..+|+||... . +...+.....+.+++.+.++-..+
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 33 348899999632 111223222211122455677777632 1 122222335688999999999999
Q ss_pred HHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHH
Q 037625 303 FREKVGEETLKSDHDIAELAQIVANECGGLPLALI 337 (467)
Q Consensus 303 f~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~ 337 (467)
+.+.+.......+ ++....|++.+.|.+-.+.
T Consensus 277 l~~~~~~~~~~l~---~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 277 LQKKAEEEGLELP---DEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHH
Confidence 9998865443332 4677788888888776544
No 94
>PRK06620 hypothetical protein; Validated
Probab=98.42 E-value=3.2e-06 Score=75.51 Aligned_cols=135 Identities=11% Similarity=0.028 Sum_probs=80.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLR 236 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 236 (467)
+.+.|||++|+|||+|++.+++.. .. .++. .... . . +.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~--~~~~----------------------~-~-------~~~- 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIK--DIFF----------------------N-E-------EIL- 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcc--hhhh----------------------c-h-------hHH-
Confidence 568999999999999999988765 11 1211 0000 0 0 011
Q ss_pred CCcEEEEeCCCCChhhhhhhccCCCCCCCCCceEEEecCChhh-------hhhcCCCcccccCCCCHHHHHHHHHHHhCC
Q 037625 237 EKRIVLLLDDIWERVDLTKVGVPLSGPKNTTSKVVFTTRFIGV-------CGSMEADRKFLVACLSEKDAWELFREKVGE 309 (467)
Q Consensus 237 ~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iiiTtR~~~~-------~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~ 309 (467)
...-+|++||++...+ ..+...+......|..+|+|++.... ...+.....+++++++.++...++.+.+..
T Consensus 84 ~~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 84 EKYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred hcCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 1234788999963221 12222221123456788888874332 222334457899999999988888887653
Q ss_pred CCCCCChhHHHHHHHHHHHhCCCcHHH
Q 037625 310 ETLKSDHDIAELAQIVANECGGLPLAL 336 (467)
Q Consensus 310 ~~~~~~~~~~~~~~~I~~~~~G~Plai 336 (467)
.....+ +++...|++.+.|..-.+
T Consensus 163 ~~l~l~---~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 163 SSVTIS---RQIIDFLLVNLPREYSKI 186 (214)
T ss_pred cCCCCC---HHHHHHHHHHccCCHHHH
Confidence 332222 466777888777655443
No 95
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=4.9e-05 Score=71.99 Aligned_cols=196 Identities=15% Similarity=0.133 Sum_probs=109.9
Q ss_pred CccccchHHHHHHHHHHhcCCC-cEEEEEccCCCcHHHHHHHHHhcccCC-------------CCCCCeEEEEEeCCCCC
Q 037625 135 RTVVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTHINNKFLES-------------PTNFDCVIWVVVSKDLR 200 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~-~~i~I~G~~GiGKTtLa~~v~~~~~~~-------------~~~f~~~~wv~~~~~~~ 200 (467)
..++|.+..++.+.+.+..++. +...++|+.|+||+++|..+++.+.-. ..|.| ..|+.-.....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEecccccc
Confidence 3579999999999999988764 789999999999999999988776211 11222 23332110000
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh-----cCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEEe
Q 037625 201 LEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL-----REKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVFT 273 (467)
Q Consensus 201 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iiiT 273 (467)
-..+-..-+...+...........+ .++.+.+.+ .+++-++|+|+++. ....+.+...+.-+. +..-|++|
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id-~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~ 160 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLE-QIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIA 160 (314)
T ss_pred ccccchhhhhhccccccccccCcHH-HHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEE
Confidence 0000001111111100000111122 223444444 34667999999864 344455544442233 33344445
Q ss_pred cCChhhhh-hcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHH
Q 037625 274 TRFIGVCG-SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITI 339 (467)
Q Consensus 274 tR~~~~~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 339 (467)
+....+.. ..+....+++.+++.++..+.+.+...... . ......++..++|.|..+...
T Consensus 161 ~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~--~----~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 161 PSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI--L----NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred CChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc--c----hhHHHHHHHHcCCCHHHHHHH
Confidence 44444432 334456889999999999999998743211 0 111357889999999765443
No 96
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.41 E-value=5.4e-06 Score=77.56 Aligned_cols=155 Identities=13% Similarity=0.105 Sum_probs=82.7
Q ss_pred ccccchHHHHHHHHHHh---c-------C-----CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCC
Q 037625 136 TVVGLQSQLEQVWRCLA---E-------E-----SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLR 200 (467)
Q Consensus 136 ~~vGr~~~~~~l~~~L~---~-------~-----~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 200 (467)
.++|.+..+++|.++.. - + ....+.++|++|+|||++|+.+++.... .+.....-++.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~-~g~~~~~~~v~v~~--- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHR-LGYVRKGHLVSVTR--- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHH-cCCcccceEEEecH---
Confidence 47887777766655322 0 0 1236889999999999999887776521 11111112333332
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh-----------hhhhhhccCCCCCCCCCce
Q 037625 201 LEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER-----------VDLTKVGVPLSGPKNTTSK 269 (467)
Q Consensus 201 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~~~l~~~~~~~s~ 269 (467)
.++ ...+. + .+... ...+.+.. ..-+|+||++... .....+...+ .....+.+
T Consensus 99 -~~l----~~~~~--g-----~~~~~-~~~~~~~a--~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~l-e~~~~~~~ 162 (284)
T TIGR02880 99 -DDL----VGQYI--G-----HTAPK-TKEILKRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVM-ENQRDDLV 162 (284)
T ss_pred -HHH----hHhhc--c-----cchHH-HHHHHHHc--cCcEEEEechhhhccCCCccchHHHHHHHHHHHH-hcCCCCEE
Confidence 122 11111 1 11111 11222222 3368899998621 1223333333 23335667
Q ss_pred EEEecCChhhhhhc--------CCCcccccCCCCHHHHHHHHHHHhCCC
Q 037625 270 VVFTTRFIGVCGSM--------EADRKFLVACLSEKDAWELFREKVGEE 310 (467)
Q Consensus 270 iiiTtR~~~~~~~~--------~~~~~~~l~~L~~~e~~~lf~~~~~~~ 310 (467)
||+++........+ .....+.+++++.+|..+++...+...
T Consensus 163 vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~ 211 (284)
T TIGR02880 163 VILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQ 211 (284)
T ss_pred EEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHh
Confidence 77776543221111 123568899999999999999877543
No 97
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.40 E-value=2.8e-06 Score=90.95 Aligned_cols=179 Identities=14% Similarity=0.126 Sum_probs=98.4
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCC----CCeEEE-EEeCCCCCHHHHHHHHH
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTN----FDCVIW-VVVSKDLRLEKIQEDIG 209 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~----f~~~~w-v~~~~~~~~~~~~~~i~ 209 (467)
+.++||+.++.+++..|......-+.++|++|+||||+|+.+++.+. .... .+..+| +.++.-.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~-~~~v~~~l~~~~i~~l~l~~l~---------- 255 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIA-AGDVPPALRNVRLLSLDLGLLQ---------- 255 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHh-hCCCCccccCCeEEEeehhhhh----------
Confidence 46899999999999999877666788999999999999999999872 1111 122222 2222100
Q ss_pred HHhcCCCCCCCCcCHHHHHHHHHHHhc--CCcEEEEeCCCCChh---------hhhhhccCCCCCCCCCceEEEecCChh
Q 037625 210 KKIGLVGDSWKSRSVEEKALDIFRSLR--EKRIVLLLDDIWERV---------DLTKVGVPLSGPKNTTSKVVFTTRFIG 278 (467)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---------~~~~~~~~l~~~~~~~s~iiiTtR~~~ 278 (467)
.+.. .....+.....+.+.+. +++++|++|++.... +...+..+. ......++|-||....
T Consensus 256 -----ag~~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~--l~~G~l~~IgaTT~~e 327 (852)
T TIGR03345 256 -----AGAS-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPA--LARGELRTIAATTWAE 327 (852)
T ss_pred -----cccc-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHH--hhCCCeEEEEecCHHH
Confidence 0000 11122223333333332 468999999985321 111122111 1223456666665432
Q ss_pred hh-------hhcCCCcccccCCCCHHHHHHHHHHHhCCCCC-CCChhHHHHHHHHHHHhCCC
Q 037625 279 VC-------GSMEADRKFLVACLSEKDAWELFREKVGEETL-KSDHDIAELAQIVANECGGL 332 (467)
Q Consensus 279 ~~-------~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~-~~~~~~~~~~~~I~~~~~G~ 332 (467)
.. ........+.+++++.++..+++......-.. ..-.-..+....+++.+.+.
T Consensus 328 ~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 328 YKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred HhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 21 11123357899999999999997544321110 00001134555666666653
No 98
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.38 E-value=4.1e-06 Score=81.80 Aligned_cols=171 Identities=17% Similarity=0.273 Sum_probs=96.8
Q ss_pred CccccchHHHHHHHHHHhc-------------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCH
Q 037625 135 RTVVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 201 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~-------------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 201 (467)
.++.|.+..+++|.+.+.. ...+-+.++|++|+|||+||+.+++.. ...| +.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~f-----i~i~~---- 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATF-----IRVVG---- 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEeh----
Confidence 3568888888888776531 135679999999999999999999976 3332 11111
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH-HhcCCcEEEEeCCCCCh------------hh----hhhhccCCCC-C
Q 037625 202 EKIQEDIGKKIGLVGDSWKSRSVEEKALDIFR-SLREKRIVLLLDDIWER------------VD----LTKVGVPLSG-P 263 (467)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~------------~~----~~~~~~~l~~-~ 263 (467)
..+.... . ... ......+.. .....+.+|+||+++.. .. +..+...+.. .
T Consensus 213 s~l~~k~---~--------ge~-~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~ 280 (398)
T PTZ00454 213 SEFVQKY---L--------GEG-PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD 280 (398)
T ss_pred HHHHHHh---c--------chh-HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC
Confidence 1111111 0 111 112222333 23457899999998531 01 1122111100 1
Q ss_pred CCCCceEEEecCChhhh-h-hc---CCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCc
Q 037625 264 KNTTSKVVFTTRFIGVC-G-SM---EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLP 333 (467)
Q Consensus 264 ~~~~s~iiiTtR~~~~~-~-~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 333 (467)
...+..||+||...... . .. ..+..+.++..+.++..++|...........+.++ ..+++.+.|..
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~----~~la~~t~g~s 351 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDL----EDFVSRPEKIS 351 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCH----HHHHHHcCCCC
Confidence 23466788888744332 1 11 23456889999999988899877655443333333 35566676653
No 99
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.37 E-value=8.2e-06 Score=81.50 Aligned_cols=159 Identities=17% Similarity=0.228 Sum_probs=89.1
Q ss_pred CccccchHHHHHHHHHHhc-------------CCCcEEEEEccCCCcHHHHHHHHHhcccCCC--CCCCeEEEEEeCCCC
Q 037625 135 RTVVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESP--TNFDCVIWVVVSKDL 199 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~-------------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~--~~f~~~~wv~~~~~~ 199 (467)
..+.|.+..++++.+.+.. ...+-+.++|++|+|||++|+.+++.+.... ..+....|+++....
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e 261 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE 261 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh
Confidence 3457899999888887641 1345689999999999999999999872110 012234444443321
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh-----cCCcEEEEeCCCCCh---------hh-----hhhhccCC
Q 037625 200 RLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL-----REKRIVLLLDDIWER---------VD-----LTKVGVPL 260 (467)
Q Consensus 200 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~---------~~-----~~~~~~~l 260 (467)
++... .. ........+++.. .+++++|+||+++.. .+ +..+...+
T Consensus 262 ----Ll~ky-----------vG-ete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 262 ----LLNKY-----------VG-ETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred ----hcccc-----------cc-hHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 11100 00 1111222222221 347899999999631 01 12222222
Q ss_pred CC-CCCCCceEEEecCChhhh--hhc---CCCcccccCCCCHHHHHHHHHHHhCC
Q 037625 261 SG-PKNTTSKVVFTTRFIGVC--GSM---EADRKFLVACLSEKDAWELFREKVGE 309 (467)
Q Consensus 261 ~~-~~~~~s~iiiTtR~~~~~--~~~---~~~~~~~l~~L~~~e~~~lf~~~~~~ 309 (467)
.. ....+..||.||...... ... ..+..++++..+.++..++|..++..
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 11 112345566666544331 111 23556899999999999999998754
No 100
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.37 E-value=9.9e-06 Score=80.42 Aligned_cols=154 Identities=13% Similarity=0.112 Sum_probs=90.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL 235 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 235 (467)
...+.|+|+.|+|||+|++.+++... .....++|++ ...+...+...+.. .. ...++..+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~---~~~~~v~yi~------~~~f~~~~~~~l~~-------~~----~~~f~~~~ 200 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR---ESGGKILYVR------SELFTEHLVSAIRS-------GE----MQRFRQFY 200 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH---HcCCCEEEee------HHHHHHHHHHHHhc-------ch----HHHHHHHc
Confidence 35689999999999999999999872 1223455654 33444444444421 01 12333434
Q ss_pred cCCcEEEEeCCCCCh----hhhhhhccCCCCCCCCCceEEEecCCh-h--------hhhhcCCCcccccCCCCHHHHHHH
Q 037625 236 REKRIVLLLDDIWER----VDLTKVGVPLSGPKNTTSKVVFTTRFI-G--------VCGSMEADRKFLVACLSEKDAWEL 302 (467)
Q Consensus 236 ~~k~~LlVlDdv~~~----~~~~~~~~~l~~~~~~~s~iiiTtR~~-~--------~~~~~~~~~~~~l~~L~~~e~~~l 302 (467)
. +.-+|++||+... ...+.+...+......|..||+||... . +...+.....+.+.+++.++...+
T Consensus 201 ~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~i 279 (445)
T PRK12422 201 R-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSF 279 (445)
T ss_pred c-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHH
Confidence 3 3458888998532 112233222211112356788877532 1 122233446788999999999999
Q ss_pred HHHHhCCCCCCCChhHHHHHHHHHHHhCCCc
Q 037625 303 FREKVGEETLKSDHDIAELAQIVANECGGLP 333 (467)
Q Consensus 303 f~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 333 (467)
+.+++.......+ .++...|+..+.|.-
T Consensus 280 L~~k~~~~~~~l~---~evl~~la~~~~~di 307 (445)
T PRK12422 280 LERKAEALSIRIE---ETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhcCCCH
Confidence 9998765443332 355666777776543
No 101
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.36 E-value=2e-06 Score=82.19 Aligned_cols=93 Identities=17% Similarity=0.127 Sum_probs=63.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCC--CCHHHHHHHHHHHhcCCCCCCCCcCHHHHH----
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD--LRLEKIQEDIGKKIGLVGDSWKSRSVEEKA---- 228 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~---- 228 (467)
....++|+|++|+|||||++.+++.. . ..+|+..+|+.+.+. .++.++++.+...+-...-+..........
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I-~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAI-T-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhh-c-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 44579999999999999999999987 2 347999999999866 689999999865443222111111111111
Q ss_pred HHHHHH-hcCCcEEEEeCCCCC
Q 037625 229 LDIFRS-LREKRIVLLLDDIWE 249 (467)
Q Consensus 229 ~~l~~~-l~~k~~LlVlDdv~~ 249 (467)
+..... -.+++++|++|++..
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhH
Confidence 112222 257999999999963
No 102
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.36 E-value=1.2e-05 Score=76.95 Aligned_cols=146 Identities=12% Similarity=0.102 Sum_probs=83.6
Q ss_pred CCccccchHHHHHHHHHHhcCCC-cEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 037625 134 ERTVVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKI 212 (467)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~~~~~-~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 212 (467)
-..++|.+...+.+..++..+.. .++.++|++|+||||+|+.+++.. ... ..+++.+. .....+...+....
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~---~~~i~~~~-~~~~~i~~~l~~~~ 92 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAE---VLFVNGSD-CRIDFVRNRLTRFA 92 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Ccc---ceEeccCc-ccHHHHHHHHHHHH
Confidence 35689999999999999987654 466669999999999999999875 221 23344333 11111111111100
Q ss_pred cCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh---hhhhhhccCCCCCCCCCceEEEecCChhh-h-hhcCCCc
Q 037625 213 GLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER---VDLTKVGVPLSGPKNTTSKVVFTTRFIGV-C-GSMEADR 287 (467)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~~~~~l~~~~~~~s~iiiTtR~~~~-~-~~~~~~~ 287 (467)
.. ..+.+.+-++|+||++.. .....+...+ .....++.+|+||..... . ...+...
T Consensus 93 ~~------------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~l-e~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 93 ST------------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFM-EAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred Hh------------------hcccCCCeEEEEECcccccCHHHHHHHHHHH-HhcCCCceEEEEcCChhhchHHHHhhce
Confidence 00 001134568999999643 2222232223 233456788888864422 1 1112234
Q ss_pred ccccCCCCHHHHHHHHHH
Q 037625 288 KFLVACLSEKDAWELFRE 305 (467)
Q Consensus 288 ~~~l~~L~~~e~~~lf~~ 305 (467)
.+.++..+.++..+++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 567777778877766543
No 103
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.35 E-value=3.8e-05 Score=68.17 Aligned_cols=184 Identities=16% Similarity=0.175 Sum_probs=108.7
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeC-CCCCHHHHHHHHHHHhcCCCCCCCCc-CHHHHHHH
Q 037625 153 EESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVS-KDLRLEKIQEDIGKKIGLVGDSWKSR-SVEEKALD 230 (467)
Q Consensus 153 ~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~~~ 230 (467)
.++.+++.++|.-|+|||.+.+.+.... . -+.++-+.+. +......+...+...+... +..... ..++....
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~-~----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~-p~~~~~~~~e~~~~~ 121 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASL-N----EDQVAVVVIDKPTLSDATLLEAIVADLESQ-PKVNVNAVLEQIDRE 121 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc-C----CCceEEEEecCcchhHHHHHHHHHHHhccC-ccchhHHHHHHHHHH
Confidence 3456799999999999999999666555 1 2222224443 3456777888888887652 111111 22333344
Q ss_pred HHHHh-cCCc-EEEEeCCCCCh--hhhhhhccCCC--CCCCCCceEEEecCCh--------hhhhhcCCCcc-cccCCCC
Q 037625 231 IFRSL-REKR-IVLLLDDIWER--VDLTKVGVPLS--GPKNTTSKVVFTTRFI--------GVCGSMEADRK-FLVACLS 295 (467)
Q Consensus 231 l~~~l-~~k~-~LlVlDdv~~~--~~~~~~~~~l~--~~~~~~s~iiiTtR~~--------~~~~~~~~~~~-~~l~~L~ 295 (467)
+.... ++++ ..+++||..+. ..++.+..... ......-+|+.....+ .....-..... |++.|++
T Consensus 122 L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 122 LAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred HHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 44444 4566 99999998642 33333322211 1111112344333211 11111111123 8999999
Q ss_pred HHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHHHH
Q 037625 296 EKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIGRA 342 (467)
Q Consensus 296 ~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~ 342 (467)
.++...++..++.......+-.-.+....|.....|.|.+|+.++..
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 99999999998876653333334566788999999999999988644
No 104
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.35 E-value=2.9e-05 Score=69.16 Aligned_cols=47 Identities=23% Similarity=0.405 Sum_probs=39.4
Q ss_pred CCccccchHHHHHHHHHHh----cCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 134 ERTVVGLQSQLEQVWRCLA----EESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~----~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+.++|.+.+++.|.+... ......+.+||..|+|||+|++.+.+..
T Consensus 26 l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 26 LDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 4678999999999877653 3355678999999999999999999987
No 105
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.34 E-value=5.2e-05 Score=72.80 Aligned_cols=173 Identities=14% Similarity=0.231 Sum_probs=112.2
Q ss_pred CCccccchHHHHHHHHHHhc----CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 037625 134 ERTVVGLQSQLEQVWRCLAE----ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIG 209 (467)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~~----~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 209 (467)
+..++||+.+++.+..++.. ...+.+-|.|.+|.|||.+...++.+... ...-..++++++..-.....++..|.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~-~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSK-SSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhh-hcccceeEEEeeccccchHHHHHHHH
Confidence 45689999999999999874 35678899999999999999999998722 12223567787776667777777777
Q ss_pred HHh--cCCCCCCCCcCHHHHHHHHHHHhcC--CcEEEEeCCCCChh--hhhhhccCCCCCCCCCceEEEecCChhh----
Q 037625 210 KKI--GLVGDSWKSRSVEEKALDIFRSLRE--KRIVLLLDDIWERV--DLTKVGVPLSGPKNTTSKVVFTTRFIGV---- 279 (467)
Q Consensus 210 ~~l--~~~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~s~iiiTtR~~~~---- 279 (467)
..+ .... .....+....+....++ ..+|+|+|+.+... .-..+...|..+.-+++++|+..--..+
T Consensus 228 ~~~~q~~~s----~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTd 303 (529)
T KOG2227|consen 228 SSLLQDLVS----PGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTD 303 (529)
T ss_pred HHHHHHhcC----CchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHH
Confidence 766 2111 11224555666666544 36899999987431 1222223332344567776654331111
Q ss_pred --hhhcC-----CCcccccCCCCHHHHHHHHHHHhCCCC
Q 037625 280 --CGSME-----ADRKFLVACLSEKDAWELFREKVGEET 311 (467)
Q Consensus 280 --~~~~~-----~~~~~~l~~L~~~e~~~lf~~~~~~~~ 311 (467)
...+. ....+...|-+.++..++|..++....
T Consensus 304 R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~ 342 (529)
T KOG2227|consen 304 RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES 342 (529)
T ss_pred HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc
Confidence 11111 234567889999999999999986544
No 106
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.33 E-value=8.1e-06 Score=86.74 Aligned_cols=155 Identities=17% Similarity=0.218 Sum_probs=90.4
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCC--C-CCeEEEEEeCCCCCHHHHHHHHHHH
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPT--N-FDCVIWVVVSKDLRLEKIQEDIGKK 211 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~--~-f~~~~wv~~~~~~~~~~~~~~i~~~ 211 (467)
+.++||+++++.++..|......-+.++|++|+|||++|+.+++......- . .+..+|. + +...+ ...
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l----~a~ 252 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSL----LAG 252 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHH----hhh
Confidence 468999999999999998766667889999999999999999998722111 1 1333432 1 11111 110
Q ss_pred hcCCCCCCCCcCHHHHHHHHHHHhc-CCcEEEEeCCCCCh----------hhhhh-hccCCCCCCCCCceEEEecCChhh
Q 037625 212 IGLVGDSWKSRSVEEKALDIFRSLR-EKRIVLLLDDIWER----------VDLTK-VGVPLSGPKNTTSKVVFTTRFIGV 279 (467)
Q Consensus 212 l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~----------~~~~~-~~~~l~~~~~~~s~iiiTtR~~~~ 279 (467)
.. .....++....+.+.++ .++.+|++|+++.- .+... +...+ .....++|-+|.....
T Consensus 253 ~~------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l---~~g~i~~IgaTt~~e~ 323 (731)
T TIGR02639 253 TK------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL---SSGKLRCIGSTTYEEY 323 (731)
T ss_pred cc------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH---hCCCeEEEEecCHHHH
Confidence 00 11223344444444443 46789999998621 11112 22222 1223455554443221
Q ss_pred h-------hhcCCCcccccCCCCHHHHHHHHHHHh
Q 037625 280 C-------GSMEADRKFLVACLSEKDAWELFREKV 307 (467)
Q Consensus 280 ~-------~~~~~~~~~~l~~L~~~e~~~lf~~~~ 307 (467)
. ........+++++++.++..+++....
T Consensus 324 ~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 324 KNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 1 111223478899999999999999654
No 107
>CHL00181 cbbX CbbX; Provisional
Probab=98.33 E-value=2.3e-05 Score=73.29 Aligned_cols=156 Identities=12% Similarity=0.145 Sum_probs=83.1
Q ss_pred ccccchHHHHHHHHHHh--------c-------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCC
Q 037625 136 TVVGLQSQLEQVWRCLA--------E-------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLR 200 (467)
Q Consensus 136 ~~vGr~~~~~~l~~~L~--------~-------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 200 (467)
.++|.+..+++|.++.. . .....+.++|++|+||||+|+.+++.... .+.-...-|+.++
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~-~g~~~~~~~~~v~---- 98 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYK-LGYIKKGHLLTVT---- 98 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHH-cCCCCCCceEEec----
Confidence 57887777665544421 0 12235889999999999999999886511 1111111133333
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh-----------hhhhhhccCCCCCCCCCce
Q 037625 201 LEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER-----------VDLTKVGVPLSGPKNTTSK 269 (467)
Q Consensus 201 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~~~l~~~~~~~s~ 269 (467)
..++.... .+ ..... ...+.+.. ..-+|+||++... .....+...+ .....+..
T Consensus 99 ~~~l~~~~---~g--------~~~~~-~~~~l~~a--~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~m-e~~~~~~~ 163 (287)
T CHL00181 99 RDDLVGQY---IG--------HTAPK-TKEVLKKA--MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVM-ENQRDDLV 163 (287)
T ss_pred HHHHHHHH---hc--------cchHH-HHHHHHHc--cCCEEEEEccchhccCCCccchHHHHHHHHHHHH-hcCCCCEE
Confidence 11222111 11 01111 12222222 2349999998631 1223333333 23334567
Q ss_pred EEEecCChhhhhhc--------CCCcccccCCCCHHHHHHHHHHHhCCCC
Q 037625 270 VVFTTRFIGVCGSM--------EADRKFLVACLSEKDAWELFREKVGEET 311 (467)
Q Consensus 270 iiiTtR~~~~~~~~--------~~~~~~~l~~L~~~e~~~lf~~~~~~~~ 311 (467)
||+++......... .....+.+++++.+|..+++...+....
T Consensus 164 vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~ 213 (287)
T CHL00181 164 VIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQ 213 (287)
T ss_pred EEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhc
Confidence 77777543332111 2345788999999999999998875433
No 108
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.31 E-value=2.9e-06 Score=83.45 Aligned_cols=171 Identities=20% Similarity=0.276 Sum_probs=96.3
Q ss_pred CccccchHHHHHHHHHHhc-------------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCH
Q 037625 135 RTVVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 201 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~-------------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 201 (467)
.++.|.+..+++|.+.+.- ...+-+.++|++|+|||++|+.+++.. ...| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~f-----i~V~~s--- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATF-----LRVVGS--- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCE-----EEEecc---
Confidence 3467899998888887641 134568899999999999999999986 3333 222111
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH-HhcCCcEEEEeCCCCChh----------------hhhhhccCCCC-C
Q 037625 202 EKIQEDIGKKIGLVGDSWKSRSVEEKALDIFR-SLREKRIVLLLDDIWERV----------------DLTKVGVPLSG-P 263 (467)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~----------------~~~~~~~~l~~-~ 263 (467)
++.... .... ......+.. ...+.+.+|+||+++... .+..+...+.. .
T Consensus 252 -eL~~k~-----------~Ge~-~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~ 318 (438)
T PTZ00361 252 -ELIQKY-----------LGDG-PKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD 318 (438)
T ss_pred -hhhhhh-----------cchH-HHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc
Confidence 111110 0011 122222222 234578899999985210 01111111100 1
Q ss_pred CCCCceEEEecCChhhhhh--c---CCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCc
Q 037625 264 KNTTSKVVFTTRFIGVCGS--M---EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLP 333 (467)
Q Consensus 264 ~~~~s~iiiTtR~~~~~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 333 (467)
...+..||+||........ . ..+..+.+...+.++..++|..++.........++. .++..+.|.-
T Consensus 319 ~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~----~la~~t~g~s 389 (438)
T PTZ00361 319 SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLE----EFIMAKDELS 389 (438)
T ss_pred ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHH----HHHHhcCCCC
Confidence 2346678888875433211 1 234578899999999999999877654433333333 4555665543
No 109
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=4.2e-05 Score=72.87 Aligned_cols=95 Identities=12% Similarity=0.116 Sum_probs=59.9
Q ss_pred CCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEEecCCh-hhh-hhcCCCcccccCCCCHHHHHHHHHHHhCCCCC
Q 037625 237 EKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVFTTRFI-GVC-GSMEADRKFLVACLSEKDAWELFREKVGEETL 312 (467)
Q Consensus 237 ~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iiiTtR~~-~~~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~ 312 (467)
+++-++|+|+++. ....+.+...+ -..+.++.+|+||.+. .+. ...+....+.+.+++.+++.+++.+......
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~L-EEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~~- 182 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSL-EEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPESD- 182 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHH-hCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccCC-
Confidence 3444567799974 34455555555 2333566666666654 332 2234456789999999999999987642111
Q ss_pred CCChhHHHHHHHHHHHhCCCcHHHHHH
Q 037625 313 KSDHDIAELAQIVANECGGLPLALITI 339 (467)
Q Consensus 313 ~~~~~~~~~~~~I~~~~~G~Plai~~~ 339 (467)
.+.+..++..++|.|+....+
T Consensus 183 ------~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 ------ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ------hHHHHHHHHHcCCCHHHHHHH
Confidence 244567789999999855443
No 110
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.24 E-value=1.6e-05 Score=69.21 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=49.6
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCH
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 201 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 201 (467)
.++||-++.++.+.-...+++.+-+.|.||+|+||||-+..+++.+ -....-+.+.-++.|+....
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L-LG~~~ke~vLELNASdeRGI 92 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL-LGDSYKEAVLELNASDERGI 92 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH-hChhhhhHhhhccCcccccc
Confidence 4679999999999888888999999999999999999999998887 22223334444444444433
No 111
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.1e-05 Score=74.71 Aligned_cols=193 Identities=21% Similarity=0.288 Sum_probs=112.4
Q ss_pred cccchHHHHHHHHHHhc-------------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHH
Q 037625 137 VVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEK 203 (467)
Q Consensus 137 ~vGr~~~~~~l~~~L~~-------------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 203 (467)
+=|.++++++|.+.+.- +..+=|.+||++|+|||-||++|+++. ...| +.+..+ +
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtF-----IrvvgS----E 220 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DATF-----IRVVGS----E 220 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CceE-----EEeccH----H
Confidence 45788889998887642 245568999999999999999999986 4444 222221 2
Q ss_pred HHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhc-CCcEEEEeCCCCC-------------hhhhh---hh---ccCCCCC
Q 037625 204 IQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLR-EKRIVLLLDDIWE-------------RVDLT---KV---GVPLSGP 263 (467)
Q Consensus 204 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~-------------~~~~~---~~---~~~l~~~ 263 (467)
+.+.. +| ....++..+++.-+ +.+++|.+|+++. .+..+ ++ ..-| .
T Consensus 221 lVqKY---iG---------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGF--D 286 (406)
T COG1222 221 LVQKY---IG---------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGF--D 286 (406)
T ss_pred HHHHH---hc---------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCC--C
Confidence 22211 11 11345555555554 4689999999852 11111 11 1122 3
Q ss_pred CCCCceEEEecCChhh-----hhhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcH----
Q 037625 264 KNTTSKVVFTTRFIGV-----CGSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPL---- 334 (467)
Q Consensus 264 ~~~~s~iiiTtR~~~~-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl---- 334 (467)
...+.|||..|...++ .+--..++.++++.-+.+.-.++|.-+........+-+++. +++.|.|.--
T Consensus 287 ~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~----la~~~~g~sGAdlk 362 (406)
T COG1222 287 PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLEL----LARLTEGFSGADLK 362 (406)
T ss_pred CCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHH----HHHhcCCCchHHHH
Confidence 3567899987764433 22223456788886666667788888877666555555554 5556666543
Q ss_pred HHHHHHHHhc--cCC---CHHHHHHHHHHH
Q 037625 335 ALITIGRAMA--YRK---KAEQWRRAIEEL 359 (467)
Q Consensus 335 ai~~~~~~l~--~~~---~~~~~~~~l~~l 359 (467)
|+.+=|++++ ..+ +.+++..+.+..
T Consensus 363 aictEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 363 AICTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred HHHHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 3333344432 222 345555554443
No 112
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.21 E-value=1.9e-05 Score=76.17 Aligned_cols=152 Identities=18% Similarity=0.187 Sum_probs=93.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCC--eEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFD--CVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIF 232 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 232 (467)
....+.|||+.|.|||.|++.+.+.. ..... .++++ +.+.....+...+.. .....++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~------~se~f~~~~v~a~~~-----------~~~~~Fk 171 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYL------TSEDFTNDFVKALRD-----------NEMEKFK 171 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEec------cHHHHHHHHHHHHHh-----------hhHHHHH
Confidence 36789999999999999999999988 23333 34444 233344444444321 2234455
Q ss_pred HHhcCCcEEEEeCCCCC----hhhhhhhccCCCCCCCCCceEEEecCCh---------hhhhhcCCCcccccCCCCHHHH
Q 037625 233 RSLREKRIVLLLDDIWE----RVDLTKVGVPLSGPKNTTSKVVFTTRFI---------GVCGSMEADRKFLVACLSEKDA 299 (467)
Q Consensus 233 ~~l~~k~~LlVlDdv~~----~~~~~~~~~~l~~~~~~~s~iiiTtR~~---------~~~~~~~~~~~~~l~~L~~~e~ 299 (467)
+.. .-=++++||++- ....+.+...+......|-.||+|++.. .+...+...-.+.+.+++.+..
T Consensus 172 ~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r 249 (408)
T COG0593 172 EKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETR 249 (408)
T ss_pred Hhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHH
Confidence 555 344889999853 2223344444433344555899998633 2333445566889999999999
Q ss_pred HHHHHHHhCCCCCCCChhHHHHHHHHHHHhCC
Q 037625 300 WELFREKVGEETLKSDHDIAELAQIVANECGG 331 (467)
Q Consensus 300 ~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G 331 (467)
..++.+++.......++ ++..-|++....
T Consensus 250 ~aiL~kka~~~~~~i~~---ev~~~la~~~~~ 278 (408)
T COG0593 250 LAILRKKAEDRGIEIPD---EVLEFLAKRLDR 278 (408)
T ss_pred HHHHHHHHHhcCCCCCH---HHHHHHHHHhhc
Confidence 99999987665544443 444444444433
No 113
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.21 E-value=3.9e-05 Score=71.74 Aligned_cols=200 Identities=16% Similarity=0.126 Sum_probs=115.4
Q ss_pred CCccccchHHHHHHHHHHhcCC--Cc-EEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 037625 134 ERTVVGLQSQLEQVWRCLAEES--AG-IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGK 210 (467)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~~~~--~~-~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 210 (467)
.+.+.+|+.++..+..++.+.. .+ .|.|+|..|+|||.+.+++.+.. . ...+|+++-..++...++..|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~---n---~~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL---N---LENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc---C---CcceeeehHHhccHHHHHHHHHH
Confidence 4678999999999999997643 33 45899999999999999999876 2 24689999999999999999999
Q ss_pred HhcCCCCCCC-C----cCHHHHHHHHHH--Hhc--CCcEEEEeCCCCChhhhhh-----hccCCCCCCCCCceEEEecCC
Q 037625 211 KIGLVGDSWK-S----RSVEEKALDIFR--SLR--EKRIVLLLDDIWERVDLTK-----VGVPLSGPKNTTSKVVFTTRF 276 (467)
Q Consensus 211 ~l~~~~~~~~-~----~~~~~~~~~l~~--~l~--~k~~LlVlDdv~~~~~~~~-----~~~~l~~~~~~~s~iiiTtR~ 276 (467)
+.+....+.. . .+.......+.+ ... ++.++||||+++.-.+... +.........+...| +++-.
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~i-ils~~ 157 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVI-ILSAP 157 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEE-EEecc
Confidence 9863221111 1 111122222323 112 3589999999975433221 111110122333333 33332
Q ss_pred hhh---hhhcCCCc--ccccCCCCHHHHHHHHHHHhCCCCCCC---ChhHHHHHHHHHHHhCCCcHHHHHHHHH
Q 037625 277 IGV---CGSMEADR--KFLVACLSEKDAWELFREKVGEETLKS---DHDIAELAQIVANECGGLPLALITIGRA 342 (467)
Q Consensus 277 ~~~---~~~~~~~~--~~~l~~L~~~e~~~lf~~~~~~~~~~~---~~~~~~~~~~I~~~~~G~Plai~~~~~~ 342 (467)
... ...++... ++..+.-+.+|...++.+.-.+.. .. ...+.-+..-....|+ -+-.+..+...
T Consensus 158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r-~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~~ 229 (438)
T KOG2543|consen 158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKR-KLDVYAQFLHVLLQVFYMACR-DVNELRSLISL 229 (438)
T ss_pred ccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCcccc-chHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHH
Confidence 111 11123322 455777888998888876432211 00 0111222344455565 55555555444
No 114
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.21 E-value=0.00027 Score=68.08 Aligned_cols=275 Identities=18% Similarity=0.189 Sum_probs=161.1
Q ss_pred chHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHH-HHHHhcccCCCCCCCeEEEEEeCC---CCCHHHHHHHHHHHhcCC
Q 037625 140 LQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLL-THINNKFLESPTNFDCVIWVVVSK---DLRLEKIQEDIGKKIGLV 215 (467)
Q Consensus 140 r~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l~~~ 215 (467)
|.+..++|..||.+..-.+|+|.||.|+||+.|+ .++.++- + .++.+++.+ ..+-..+...++.++|+-
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r---~----~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR---K----NVLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC---C----CEEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 5677899999999887789999999999999999 7777654 1 277787654 345667777778777642
Q ss_pred C---------------------C--CCCCcCHHHHHHHHH--------H-------------------Hhc---CCcEEE
Q 037625 216 G---------------------D--SWKSRSVEEKALDIF--------R-------------------SLR---EKRIVL 242 (467)
Q Consensus 216 ~---------------------~--~~~~~~~~~~~~~l~--------~-------------------~l~---~k~~Ll 242 (467)
+ . ++ ..+.+.....+. + +|+ .++-+|
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGf-Ses~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVV 152 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGF-SESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVV 152 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCC-CCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEE
Confidence 1 0 01 122222222211 1 011 136799
Q ss_pred EeCCCCCh-----hhhhhhccCCC-CCCCCCceEEEecCChhhhh----hc--CCCcccccCCCCHHHHHHHHHHHhCCC
Q 037625 243 LLDDIWER-----VDLTKVGVPLS-GPKNTTSKVVFTTRFIGVCG----SM--EADRKFLVACLSEKDAWELFREKVGEE 310 (467)
Q Consensus 243 VlDdv~~~-----~~~~~~~~~l~-~~~~~~s~iiiTtR~~~~~~----~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~ 310 (467)
|+||+-.. ..++.+..+-. .-..+-.+||++|-+..... .+ ...+.+.|...+++-|.++...++...
T Consensus 153 VIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 153 VIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred EEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccc
Confidence 99998532 11222211100 13445568888887655432 22 233567799999999999999998653
Q ss_pred CCC------------CC-----hhHHHHHHHHHHHhCCCcHHHHHHHHHhccCCCHH-HHHHHHHHHHhhhhcccCCccc
Q 037625 311 TLK------------SD-----HDIAELAQIVANECGGLPLALITIGRAMAYRKKAE-QWRRAIEELRRSASKFACLGKE 372 (467)
Q Consensus 311 ~~~------------~~-----~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~~~~~-~~~~~l~~l~~~~~~~~~~~~~ 372 (467)
... .+ ..........+...||--.=+..+++.++...+++ ..+.+.++ +
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~q-------------s 299 (431)
T PF10443_consen 233 TEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQ-------------S 299 (431)
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHH-------------H
Confidence 110 00 12334456778888999888999998888765533 22222221 1
Q ss_pred hhhhHHhchh-------cCCchhhhHHHHHhhcCCCCcccchHHHHHHHHHhCCccCCCcccHHHHHHHHHHHHHHccCc
Q 037625 373 VYPLLKFSYD-------SLQNDTIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFFGESDRSGAENQGYDILDTLVRACLL 445 (467)
Q Consensus 373 ~~~~l~~s~~-------~L~~~~~k~~~l~~a~fp~~~~i~~~~li~~w~aeg~~~~~~~~~~~~~~~~~l~~L~~~~Ll 445 (467)
...+.+..+. .++= ...+....+-.+.+...++-..++. ..++.. .++..|..|.+..||
T Consensus 300 a~eI~k~fl~~~~~~~~~~~W-t~~QaW~LIk~Ls~~~~v~Y~~ll~----~~lFk~--------~~E~~L~aLe~aeLI 366 (431)
T PF10443_consen 300 ASEIRKMFLLDDSDDAKSLKW-TREQAWYLIKLLSKNDEVPYNELLL----SPLFKG--------NDETALRALEQAELI 366 (431)
T ss_pred HHHHHHHHhcCCCCcccCCCC-CHHHHHHHHHHhccCCcCcHHHHHc----ccccCC--------CChHHHHHHHHCCcE
Confidence 1222222222 1111 2234444444556666677666654 112222 123369999999999
Q ss_pred ccc
Q 037625 446 EEL 448 (467)
Q Consensus 446 ~~~ 448 (467)
...
T Consensus 367 tv~ 369 (431)
T PF10443_consen 367 TVT 369 (431)
T ss_pred EEE
Confidence 986
No 115
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.20 E-value=0.00011 Score=78.64 Aligned_cols=158 Identities=18% Similarity=0.164 Sum_probs=84.2
Q ss_pred CccccchHHHHHHHHHHhc------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHH
Q 037625 135 RTVVGLQSQLEQVWRCLAE------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDI 208 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 208 (467)
...+|.+..++.|.+++.. .+.+++.++|++|+|||++|+.+++.. ...|- -++++...+..++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l---~~~~~---~i~~~~~~~~~~i~g-- 391 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL---NRKFV---RFSLGGVRDEAEIRG-- 391 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh---cCCeE---EEeCCCcccHHHHcC--
Confidence 3578999989998887642 234589999999999999999999987 33332 222233223222211
Q ss_pred HHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCChh---------hhhhhcc-----CCCCC------CCCCc
Q 037625 209 GKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWERV---------DLTKVGV-----PLSGP------KNTTS 268 (467)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---------~~~~~~~-----~l~~~------~~~~s 268 (467)
................+...- .+..+|+||+++... .+..+.. .+... ...+.
T Consensus 392 ------~~~~~~g~~~g~i~~~l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 392 ------HRRTYVGAMPGRIIQGLKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred ------CCCceeCCCCchHHHHHHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 001111111122223333332 233478999996421 1111111 01000 01234
Q ss_pred eEEEecCChhh--hhhcCCCcccccCCCCHHHHHHHHHHHh
Q 037625 269 KVVFTTRFIGV--CGSMEADRKFLVACLSEKDAWELFREKV 307 (467)
Q Consensus 269 ~iiiTtR~~~~--~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 307 (467)
.+|.||..... .........+++.+++.++-.+++...+
T Consensus 465 ~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 465 IFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 44556554321 1222333578899999999888887654
No 116
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.17 E-value=1.1e-05 Score=86.68 Aligned_cols=155 Identities=17% Similarity=0.207 Sum_probs=89.3
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCC---CCeEEEEEeCCCCCHHHHHHHHHHH
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTN---FDCVIWVVVSKDLRLEKIQEDIGKK 211 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~~i~~~ 211 (467)
..++||+++++.+++.|......-+.++|++|+|||++|+.++.......-. -+..+|. + +...+ +..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l----~ag 249 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLL----LAG 249 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHH----hcc
Confidence 4579999999999999987666677899999999999999999887211110 1234442 1 11111 110
Q ss_pred hcCCCCCCCCcCHHHHHHHHHHHh-cCCcEEEEeCCCCCh---------hhhhhhccCCCCCCCCCceEEEecCChhhhh
Q 037625 212 IGLVGDSWKSRSVEEKALDIFRSL-REKRIVLLLDDIWER---------VDLTKVGVPLSGPKNTTSKVVFTTRFIGVCG 281 (467)
Q Consensus 212 l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~---------~~~~~~~~~l~~~~~~~s~iiiTtR~~~~~~ 281 (467)
.. .....++....+.+.+ ..++.+|++|+++.. .+...+..+. ......++|.+|.......
T Consensus 250 ~~------~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~--l~rg~l~~IgaTt~~ey~~ 321 (821)
T CHL00095 250 TK------YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPA--LARGELQCIGATTLDEYRK 321 (821)
T ss_pred CC------CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHH--HhCCCcEEEEeCCHHHHHH
Confidence 00 1122333444444443 346899999999521 0111221111 1223456666666544311
Q ss_pred -------hcCCCcccccCCCCHHHHHHHHHHH
Q 037625 282 -------SMEADRKFLVACLSEKDAWELFREK 306 (467)
Q Consensus 282 -------~~~~~~~~~l~~L~~~e~~~lf~~~ 306 (467)
.......+.+...+.++...++...
T Consensus 322 ~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 322 HIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 1122346778888999988887753
No 117
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=0.00014 Score=68.71 Aligned_cols=176 Identities=13% Similarity=0.051 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhcCCCc-EEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC-----
Q 037625 142 SQLEQVWRCLAEESAG-IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLV----- 215 (467)
Q Consensus 142 ~~~~~l~~~L~~~~~~-~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~----- 215 (467)
...+.+...+..++.+ .+.++|+.|+||+++|..+++.+. ......+- .. .-. .+...-..+
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~Ll-C~~~~~~~-------~c---~~c-~~~~~g~HPD~~~i 78 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVL-ASGPDPAA-------AQ---RTR-QLIAAGTHPDLQLV 78 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHh-CCCCCCCC-------cc---hHH-HHHhcCCCCCEEEE
Confidence 3456677777766654 589999999999999999887762 11111000 00 000 000000000
Q ss_pred --CCCCC-----CcCHHHHHHHHHHHh-----cCCcEEEEeCCCCCh--hhhhhhccCCCCCCCCCceEEEecCC-hhhh
Q 037625 216 --GDSWK-----SRSVEEKALDIFRSL-----REKRIVLLLDDIWER--VDLTKVGVPLSGPKNTTSKVVFTTRF-IGVC 280 (467)
Q Consensus 216 --~~~~~-----~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iiiTtR~-~~~~ 280 (467)
.+... ..-.-+.+..+.+.+ .+++-++|+|+++.. ..-+.+...+ -....++.+|++|.+ ..+.
T Consensus 79 ~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtL-EEPp~~~~fiL~~~~~~~lL 157 (319)
T PRK08769 79 SFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTL-EEPSPGRYLWLISAQPARLP 157 (319)
T ss_pred ecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHh-hCCCCCCeEEEEECChhhCc
Confidence 00000 000112223333333 245679999999743 3444444444 233446666665554 4443
Q ss_pred -hhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHH
Q 037625 281 -GSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITI 339 (467)
Q Consensus 281 -~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 339 (467)
...+....+.+.+++.+++.+.+.+. +. . .+.+..++..++|.|+....+
T Consensus 158 pTIrSRCq~i~~~~~~~~~~~~~L~~~-~~----~----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 158 ATIRSRCQRLEFKLPPAHEALAWLLAQ-GV----S----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred hHHHhhheEeeCCCcCHHHHHHHHHHc-CC----C----hHHHHHHHHHcCCCHHHHHHH
Confidence 22344567889999999999998764 11 1 133667899999999865443
No 118
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.14 E-value=3.8e-05 Score=78.04 Aligned_cols=198 Identities=18% Similarity=0.178 Sum_probs=104.8
Q ss_pred CccccchHHHHHHHHHHh---c---------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHH
Q 037625 135 RTVVGLQSQLEQVWRCLA---E---------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 202 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~---~---------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 202 (467)
.+++|.+..++++.+.+. . ...+-+.++|++|+|||+||+.+++.. ...| +.++. .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~-----~~i~~----~ 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPF-----FSISG----S 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCe-----eeccH----H
Confidence 467888877666655443 1 123458899999999999999999876 2222 22221 1
Q ss_pred HHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCChh----------------hhhhhccCCCC-CCC
Q 037625 203 KIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWERV----------------DLTKVGVPLSG-PKN 265 (467)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~~~~~l~~-~~~ 265 (467)
++.... ...........+.......+.+|+|||++... ....+...+.. ...
T Consensus 123 ~~~~~~-----------~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 123 DFVEMF-----------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred HHHHHH-----------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 111110 01111222222333334567999999995310 11111111100 123
Q ss_pred CCceEEEecCChhh-----hhhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCC-cHHHHHH
Q 037625 266 TTSKVVFTTRFIGV-----CGSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGL-PLALITI 339 (467)
Q Consensus 266 ~~s~iiiTtR~~~~-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~-Plai~~~ 339 (467)
.+..||.||..... .+....+..+.++..+.++-.++|...+........ .....+++.+.|. +--|..+
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~----~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD----VDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc----hhHHHHHHhCCCCCHHHHHHH
Confidence 34556666664432 111124567889999999999999887765432222 2234777778774 3334433
Q ss_pred HHH-----hccC---CCHHHHHHHHHHH
Q 037625 340 GRA-----MAYR---KKAEQWRRAIEEL 359 (467)
Q Consensus 340 ~~~-----l~~~---~~~~~~~~~l~~l 359 (467)
... .+.+ -+.+.++.+++..
T Consensus 268 ~~eA~~~a~~~~~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 268 LNEAALLAARKNKTEITMNDIEEAIDRV 295 (495)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 221 1222 2456666665544
No 119
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=4.8e-05 Score=75.18 Aligned_cols=171 Identities=20% Similarity=0.217 Sum_probs=95.7
Q ss_pred CccccchHHHHHHHHHHhc------------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHH
Q 037625 135 RTVVGLQSQLEQVWRCLAE------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 202 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~------------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 202 (467)
.++=|.+..+.+|.+++.. ...+=|.+|||+|+|||.||+.+++.. .-.| +.++..
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel---~vPf-----~~isAp---- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL---GVPF-----LSISAP---- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc---CCce-----Eeecch----
Confidence 4567889999888887652 134568899999999999999999988 3233 333322
Q ss_pred HHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh--------hh-----hhhh---ccCCCCCC--
Q 037625 203 KIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER--------VD-----LTKV---GVPLSGPK-- 264 (467)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--------~~-----~~~~---~~~l~~~~-- 264 (467)
+|...+ ...+.+.+-+.+.+....-++++++|+++-- .+ ..++ ..-+....
T Consensus 258 ----eivSGv-------SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~ 326 (802)
T KOG0733|consen 258 ----EIVSGV-------SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTK 326 (802)
T ss_pred ----hhhccc-------CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccC
Confidence 122111 1223333333333444568999999999621 11 1111 11121111
Q ss_pred CCCceEEE-ecCChhhhhhc----CCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCC
Q 037625 265 NTTSKVVF-TTRFIGVCGSM----EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGL 332 (467)
Q Consensus 265 ~~~s~iii-TtR~~~~~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 332 (467)
+.+.-||- |+|...+-..+ ..++.|-+.--+..+-.+++...+.+......-++ ++|++.+-|.
T Consensus 327 g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~----~qlA~lTPGf 395 (802)
T KOG0733|consen 327 GDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDF----KQLAKLTPGF 395 (802)
T ss_pred CCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCH----HHHHhcCCCc
Confidence 22333332 66766553222 23556777777777777777776655443333333 3555556554
No 120
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.13 E-value=8.1e-05 Score=79.04 Aligned_cols=159 Identities=16% Similarity=0.152 Sum_probs=88.6
Q ss_pred CccccchHHHHHHHHHHhc------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHH
Q 037625 135 RTVVGLQSQLEQVWRCLAE------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDI 208 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 208 (467)
...+|.++-++.|..++.. ....++.++|++|+||||+++.++... ...| +-++.+...+..++...-
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l---~~~~---~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT---GRKY---VRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCE---EEEEcCCCCCHHHhccch
Confidence 4579999999999988862 245689999999999999999999876 3333 223334333333322111
Q ss_pred HHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCChhh------hhhhccCCCC--------------CCCCCc
Q 037625 209 GKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWERVD------LTKVGVPLSG--------------PKNTTS 268 (467)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~~~~~l~~--------------~~~~~s 268 (467)
....+ .........+... ....-+++||+++.... ...+...+.+ ..-.+.
T Consensus 396 ~~~~g--------~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 396 RTYIG--------SMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred hccCC--------CCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCce
Confidence 11111 1111222223222 22344788999963210 1122211100 011344
Q ss_pred eEEEecCChhhh-hhcCCCcccccCCCCHHHHHHHHHHHhC
Q 037625 269 KVVFTTRFIGVC-GSMEADRKFLVACLSEKDAWELFREKVG 308 (467)
Q Consensus 269 ~iiiTtR~~~~~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 308 (467)
.+|.|+.+..+. ...+....+++.+++.+|-.++..+++.
T Consensus 467 ~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 467 MFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred EEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhhh
Confidence 455566544332 2223345788999999999988887763
No 121
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.13 E-value=2.5e-05 Score=83.99 Aligned_cols=154 Identities=18% Similarity=0.196 Sum_probs=87.2
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCC----CC-eEEEEEeCCCCCHHHHHHHHH
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTN----FD-CVIWVVVSKDLRLEKIQEDIG 209 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~----f~-~~~wv~~~~~~~~~~~~~~i~ 209 (467)
+.++||+.+++.++..|.......+.++|++|+|||++|+.++..... ... .. .+++++++.- .
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~-~~vp~~l~~~~~~~l~l~~l------~---- 246 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN-GEVPEGLKGRRVLALDMGAL------V---- 246 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhc-CCCchhhCCCEEEEEehhhh------h----
Confidence 458999999999999998776667889999999999999999998721 111 12 2233322211 0
Q ss_pred HHhcCCCCCCCCcCHHHHHHHHHHHh--cCCcEEEEeCCCCChh---------hhhhhccCCCCCCCCCceEEEecCChh
Q 037625 210 KKIGLVGDSWKSRSVEEKALDIFRSL--REKRIVLLLDDIWERV---------DLTKVGVPLSGPKNTTSKVVFTTRFIG 278 (467)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~---------~~~~~~~~l~~~~~~~s~iiiTtR~~~ 278 (467)
.... .....+.....+.+.+ .+++++|++|+++... +...+..+. ......++|-+|...+
T Consensus 247 ag~~------~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~--l~~g~l~~IgaTt~~e 318 (857)
T PRK10865 247 AGAK------YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPA--LARGELHCVGATTLDE 318 (857)
T ss_pred hccc------hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcch--hhcCCCeEEEcCCCHH
Confidence 0000 1112233333333332 2468999999986321 112222222 1223445665555443
Q ss_pred hhh-------hcCCCcccccCCCCHHHHHHHHHHHh
Q 037625 279 VCG-------SMEADRKFLVACLSEKDAWELFREKV 307 (467)
Q Consensus 279 ~~~-------~~~~~~~~~l~~L~~~e~~~lf~~~~ 307 (467)
... .......+.+...+.++...++....
T Consensus 319 ~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 319 YRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 211 11122345666678888888887654
No 122
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.12 E-value=2.2e-05 Score=84.78 Aligned_cols=154 Identities=15% Similarity=0.178 Sum_probs=88.9
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCC----CCeEEE-EEeCCCCCHHHHHHHHH
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTN----FDCVIW-VVVSKDLRLEKIQEDIG 209 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~----f~~~~w-v~~~~~~~~~~~~~~i~ 209 (467)
+.++||+.++++++..|.......+.++|++|+|||++|+.+++.... ... ....+| +++ ..+ .
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~-~~~p~~l~~~~~~~l~~------~~l----~ 241 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN-GDVPESLKNKRLLALDM------GAL----I 241 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc-cCCchhhcCCeEEEeeH------HHH----h
Confidence 458999999999999998766667789999999999999999988621 111 122222 221 111 1
Q ss_pred HHhcCCCCCCCCcCHHHHHHHHHHHhc--CCcEEEEeCCCCChh---------hhhhhccCCCCCCCCCceEEEecCChh
Q 037625 210 KKIGLVGDSWKSRSVEEKALDIFRSLR--EKRIVLLLDDIWERV---------DLTKVGVPLSGPKNTTSKVVFTTRFIG 278 (467)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---------~~~~~~~~l~~~~~~~s~iiiTtR~~~ 278 (467)
.... .....+.....+...+. +++.+|++|+++... +...+..+. ......++|.+|....
T Consensus 242 a~~~------~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~--l~~g~i~~IgaTt~~e 313 (852)
T TIGR03346 242 AGAK------YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPA--LARGELHCIGATTLDE 313 (852)
T ss_pred hcch------hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchh--hhcCceEEEEeCcHHH
Confidence 0000 11122333344444442 468999999996321 111222222 1223345555555443
Q ss_pred hhh-------hcCCCcccccCCCCHHHHHHHHHHHh
Q 037625 279 VCG-------SMEADRKFLVACLSEKDAWELFREKV 307 (467)
Q Consensus 279 ~~~-------~~~~~~~~~l~~L~~~e~~~lf~~~~ 307 (467)
.-. .......+.+...+.++...++....
T Consensus 314 ~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 314 YRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 211 11223457788889999999887653
No 123
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=0.00032 Score=71.01 Aligned_cols=157 Identities=20% Similarity=0.200 Sum_probs=90.2
Q ss_pred ccccchHHHHHHHHHHhc------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 037625 136 TVVGLQSQLEQVWRCLAE------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIG 209 (467)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 209 (467)
+-+|.++-+++|++.|.- -+.++++++||+|+|||+|++.+++-. ...| +-++++.-.+..++-..--
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkf---vR~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKF---VRISLGGVRDEAEIRGHRR 397 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCE---EEEecCccccHHHhccccc
Confidence 449999999999999862 245799999999999999999999987 3444 2334444444444321111
Q ss_pred HHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh---------hhhh---------hhccCCCCCCCCCceEE
Q 037625 210 KKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER---------VDLT---------KVGVPLSGPKNTTSKVV 271 (467)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------~~~~---------~~~~~l~~~~~~~s~ii 271 (467)
.-+ ..-+...++.+.+ .+.+.-|++||+++.. ..+- .|...+....-.=|.|+
T Consensus 398 TYI--------GamPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 398 TYI--------GAMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred ccc--------ccCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 111 1111222222222 2346778999999631 1111 11111100011123333
Q ss_pred -E-ecCChh-h-hhhcCCCcccccCCCCHHHHHHHHHHHh
Q 037625 272 -F-TTRFIG-V-CGSMEADRKFLVACLSEKDAWELFREKV 307 (467)
Q Consensus 272 -i-TtR~~~-~-~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 307 (467)
| |..+-+ + ...+....++++.+-+.+|-.++-++++
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 3 434333 2 3445566789999999999888887765
No 124
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.08 E-value=1.6e-05 Score=65.36 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=20.8
Q ss_pred EEEEccCCCcHHHHHHHHHhcc
Q 037625 159 IGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 159 i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
|.|+|++|+|||++|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999997
No 125
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.07 E-value=1.9e-05 Score=76.95 Aligned_cols=69 Identities=19% Similarity=0.177 Sum_probs=55.9
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHH
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQE 206 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 206 (467)
..+++.+..++.+...|... +.+.++|++|+|||++|+.+++.. .....++.+.|+++++..+..++..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhc
Confidence 34678888899999988754 468889999999999999999987 3345778899999998887666643
No 126
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.06 E-value=2.5e-05 Score=82.26 Aligned_cols=156 Identities=18% Similarity=0.281 Sum_probs=90.6
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCC---CCeEEEEEeCCCCCHHHHHHHHHHH
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTN---FDCVIWVVVSKDLRLEKIQEDIGKK 211 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~~i~~~ 211 (467)
+.++||+++++++.+.|......-+.++|++|+|||++|+.+++......-. .++.+|.. +...+ +.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la- 255 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA- 255 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc-
Confidence 3579999999999999987655667899999999999999999876221111 23444421 11111 10
Q ss_pred hcCCCCCCCCcCHHHHHHHHHHHh-cCCcEEEEeCCCCCh----------hhhhhhccCCCCCCCCCceEEEecCChhhh
Q 037625 212 IGLVGDSWKSRSVEEKALDIFRSL-REKRIVLLLDDIWER----------VDLTKVGVPLSGPKNTTSKVVFTTRFIGVC 280 (467)
Q Consensus 212 l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~~~~~~l~~~~~~~s~iiiTtR~~~~~ 280 (467)
+.. .....+.....+.+.+ +.++.+|++|+++.. .+...+..++ ......++|-+|......
T Consensus 256 -G~~----~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~--L~~g~i~vIgATt~~E~~ 328 (758)
T PRK11034 256 -GTK----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPL--LSSGKIRVIGSTTYQEFS 328 (758)
T ss_pred -ccc----hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHH--HhCCCeEEEecCChHHHH
Confidence 000 1112333444444444 346789999999631 1122222222 123345566555543321
Q ss_pred h-------hcCCCcccccCCCCHHHHHHHHHHHh
Q 037625 281 G-------SMEADRKFLVACLSEKDAWELFREKV 307 (467)
Q Consensus 281 ~-------~~~~~~~~~l~~L~~~e~~~lf~~~~ 307 (467)
. .......+.+++++.++..+++....
T Consensus 329 ~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 329 NIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1 11223578999999999999998653
No 127
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.06 E-value=2e-05 Score=65.28 Aligned_cols=88 Identities=26% Similarity=0.124 Sum_probs=49.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL 235 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 235 (467)
...+.|+|++|+||||+++.++... ......+++++.+........... ....... ............+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL---GPPGGGVIYIDGEDILEEVLDQLL---LIIVGGK-KASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc---CCCCCCEEEECCEEccccCHHHHH---hhhhhcc-CCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999987 222234556555443322222111 0000000 12223333344444444
Q ss_pred cCC-cEEEEeCCCCCh
Q 037625 236 REK-RIVLLLDDIWER 250 (467)
Q Consensus 236 ~~k-~~LlVlDdv~~~ 250 (467)
+.. ..+|++|++...
T Consensus 75 ~~~~~~viiiDei~~~ 90 (148)
T smart00382 75 RKLKPDVLILDEITSL 90 (148)
T ss_pred HhcCCCEEEEECCccc
Confidence 443 499999999753
No 128
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.05 E-value=6.5e-05 Score=73.72 Aligned_cols=135 Identities=19% Similarity=0.142 Sum_probs=82.4
Q ss_pred chHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCC
Q 037625 140 LQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSW 219 (467)
Q Consensus 140 r~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 219 (467)
|..-..++.+.+..... ++.|.|+-++||||+++.+.... ... .++++..+......-+.+.
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~~~l~d~----------- 83 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDRIELLDL----------- 83 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcchhhHHHH-----------
Confidence 34445555555544433 99999999999999998777765 222 4555433221111000111
Q ss_pred CCcCHHHHHHHHHHHhcCCcEEEEeCCCCChhhhhhhccCCCCCCCCCceEEEecCChhhhh-----h-cCCCcccccCC
Q 037625 220 KSRSVEEKALDIFRSLREKRIVLLLDDIWERVDLTKVGVPLSGPKNTTSKVVFTTRFIGVCG-----S-MEADRKFLVAC 293 (467)
Q Consensus 220 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iiiTtR~~~~~~-----~-~~~~~~~~l~~ 293 (467)
...+...-..++.+++||.|....+|......+ ...++. +|++|+-+..... . .+....+++.|
T Consensus 84 --------~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l-~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~P 153 (398)
T COG1373 84 --------LRAYIELKEREKSYIFLDEIQNVPDWERALKYL-YDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYP 153 (398)
T ss_pred --------HHHHHHhhccCCceEEEecccCchhHHHHHHHH-Hccccc-eEEEECCchhhhccchhhhcCCCceeEEECC
Confidence 111111111277899999999988888776666 444444 8888888665521 1 13345788999
Q ss_pred CCHHHHHHH
Q 037625 294 LSEKDAWEL 302 (467)
Q Consensus 294 L~~~e~~~l 302 (467)
|+..|-..+
T Consensus 154 lSF~Efl~~ 162 (398)
T COG1373 154 LSFREFLKL 162 (398)
T ss_pred CCHHHHHhh
Confidence 999988764
No 129
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=0.00021 Score=68.55 Aligned_cols=161 Identities=9% Similarity=0.018 Sum_probs=86.5
Q ss_pred cccc-chHHHHHHHHHHhcCCCc-EEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 037625 136 TVVG-LQSQLEQVWRCLAEESAG-IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIG 213 (467)
Q Consensus 136 ~~vG-r~~~~~~l~~~L~~~~~~-~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 213 (467)
.++| .+..++.+...+..++.+ ...++|+.|+||||+|..+.+.+.- ....... ..+....-+.+.....
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c-~~~~~~~-------~cg~C~~c~~~~~~~h 77 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFC-LERNGVE-------PCGTCTNCKRIDSGNH 77 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCC-CCCCCCC-------CCCcCHHHHHHhcCCC
Confidence 3566 666778888888776654 5699999999999999999887621 1101000 0000000011100000
Q ss_pred ----CCCCCCCCcCHHHHHHHHHHHh-----cCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEEecCCh-hhh-
Q 037625 214 ----LVGDSWKSRSVEEKALDIFRSL-----REKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVFTTRFI-GVC- 280 (467)
Q Consensus 214 ----~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iiiTtR~~-~~~- 280 (467)
...........++. ..+.+.+ .+++-++|+|+++. ....+.+...+ -..+.++.+|++|.+. .+.
T Consensus 78 pD~~~i~~~~~~i~id~i-r~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~L-EEPp~~~~~Il~t~~~~~ll~ 155 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQI-RYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFL-EEPSGGTTAILLTENKHQILP 155 (329)
T ss_pred CCEEEeccccccCCHHHH-HHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHh-cCCCCCceEEEEeCChHhCcH
Confidence 00000001111222 2222222 34566899999864 33455555555 3344566666666543 332
Q ss_pred hhcCCCcccccCCCCHHHHHHHHHHH
Q 037625 281 GSMEADRKFLVACLSEKDAWELFREK 306 (467)
Q Consensus 281 ~~~~~~~~~~l~~L~~~e~~~lf~~~ 306 (467)
...+....+++.+++.++..+.+.+.
T Consensus 156 TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 156 TILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 22344568899999999998888753
No 130
>PRK08116 hypothetical protein; Validated
Probab=98.04 E-value=9.9e-06 Score=75.04 Aligned_cols=103 Identities=24% Similarity=0.255 Sum_probs=59.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLR 236 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 236 (467)
..+.|+|.+|+|||.||..+++.+. .....++|++ ..+++..+....... ...+ ...+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~---~~~~~v~~~~------~~~ll~~i~~~~~~~----~~~~----~~~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI---EKGVPVIFVN------FPQLLNRIKSTYKSS----GKED----ENEIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEE------HHHHHHHHHHHHhcc----cccc----HHHHHHHhc
Confidence 4589999999999999999999982 2234556664 445555555444211 1111 222334454
Q ss_pred CCcEEEEeCCCC--Chhhh--hhhccCCCCCCCCCceEEEecCCh
Q 037625 237 EKRIVLLLDDIW--ERVDL--TKVGVPLSGPKNTTSKVVFTTRFI 277 (467)
Q Consensus 237 ~k~~LlVlDdv~--~~~~~--~~~~~~l~~~~~~~s~iiiTtR~~ 277 (467)
+-. ||||||+. ...+| ..+...+......+..+|+||...
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 434 89999994 22222 223322211123456788888743
No 131
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=0.00034 Score=66.29 Aligned_cols=177 Identities=10% Similarity=0.047 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhcCCC-cEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcC-----C
Q 037625 142 SQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGL-----V 215 (467)
Q Consensus 142 ~~~~~l~~~L~~~~~-~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-----~ 215 (467)
...+.|.+.+..++. ..+.++|+.|+||+++|..++..+. ....... ...+.-..-+.+...... .
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~ll-C~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~ 80 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLM-CQTPQGD-------QPCGQCHSCHLFQAGNHPDFHILE 80 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHc-CCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEc
Confidence 345667777776654 5678999999999999999988762 1111000 000111111111100000 0
Q ss_pred CCCCCCcCHHHHHHHHHHHh-----cCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEEecCCh-hhh-hhcCCC
Q 037625 216 GDSWKSRSVEEKALDIFRSL-----REKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVFTTRFI-GVC-GSMEAD 286 (467)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iiiTtR~~-~~~-~~~~~~ 286 (467)
.........+ .+..+.+.+ .+++-++|+|+++. ....+.+...+ -..+.++.+|++|.+. .+. ...+..
T Consensus 81 p~~~~~I~id-~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtL-EEPp~~~~fiL~t~~~~~llpTI~SRC 158 (325)
T PRK06871 81 PIDNKDIGVD-QVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTL-EEPRPNTYFLLQADLSAALLPTIYSRC 158 (325)
T ss_pred cccCCCCCHH-HHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHh-cCCCCCeEEEEEECChHhCchHHHhhc
Confidence 0000011122 222333333 35666888999974 34455555555 3344556666666543 443 223445
Q ss_pred cccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHH
Q 037625 287 RKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLAL 336 (467)
Q Consensus 287 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 336 (467)
..+.+.+++.++..+.+....... ...+...+..++|.|+..
T Consensus 159 ~~~~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 159 QTWLIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLA 200 (325)
T ss_pred eEEeCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHH
Confidence 688999999999999998764211 123556788899999643
No 132
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.00 E-value=4e-05 Score=78.73 Aligned_cols=47 Identities=19% Similarity=0.340 Sum_probs=39.9
Q ss_pred CCccccchHHHHHHHHHHhcC-----CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 134 ERTVVGLQSQLEQVWRCLAEE-----SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~~~-----~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+++|-++.++++..++... ..+++.|+|++|+||||+++.++...
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999999998753 34579999999999999999999876
No 133
>CHL00176 ftsH cell division protein; Validated
Probab=97.99 E-value=0.0001 Score=76.25 Aligned_cols=170 Identities=16% Similarity=0.219 Sum_probs=94.9
Q ss_pred CccccchHHHHHHHHHH---hcC---------CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHH
Q 037625 135 RTVVGLQSQLEQVWRCL---AEE---------SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 202 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L---~~~---------~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 202 (467)
.++.|.++.++++.+.+ ... ..+-+.++|++|+|||+||+.+++.. ...| +.++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p~-----i~is~s---- 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVPF-----FSISGS---- 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCe-----eeccHH----
Confidence 45788877666655543 321 23468999999999999999999876 2222 222211
Q ss_pred HHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh----------------hhhhhhccCCCC-CCC
Q 037625 203 KIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER----------------VDLTKVGVPLSG-PKN 265 (467)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~~~~~l~~-~~~ 265 (467)
++.... . ..........+.......+++|+|||++.. ..+..+...+.. ...
T Consensus 251 ~f~~~~---~--------g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 251 EFVEMF---V--------GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred HHHHHh---h--------hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 111100 0 011112222333344567899999999532 112222211100 123
Q ss_pred CCceEEEecCChhhhh--hc---CCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCC
Q 037625 266 TTSKVVFTTRFIGVCG--SM---EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGG 331 (467)
Q Consensus 266 ~~s~iiiTtR~~~~~~--~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G 331 (467)
.+..||.||....... .. ..+..+.+...+.++-.++++.++....... ......+++.+.|
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~----d~~l~~lA~~t~G 386 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP----DVSLELIARRTPG 386 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch----hHHHHHHHhcCCC
Confidence 4556676776543211 11 2346788889999999999998876533222 2345677777777
No 134
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.98 E-value=7.8e-05 Score=74.65 Aligned_cols=173 Identities=17% Similarity=0.143 Sum_probs=92.8
Q ss_pred CccccchHHHHHHHHHH---hc-------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHH
Q 037625 135 RTVVGLQSQLEQVWRCL---AE-------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKI 204 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L---~~-------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 204 (467)
.++.|.+..++.+.... .. ...+-|.++|++|+|||.+|+.+++.. .-.| +-++.+ .+
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~------~l 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVG------KL 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhH------Hh
Confidence 45677776666655422 11 134568999999999999999999987 2222 112211 11
Q ss_pred HHHHHHHhcCCCCCCCCcCHHHHHHHHHHH-hcCCcEEEEeCCCCChh--------------hhhhhccCCCCCCCCCce
Q 037625 205 QEDIGKKIGLVGDSWKSRSVEEKALDIFRS-LREKRIVLLLDDIWERV--------------DLTKVGVPLSGPKNTTSK 269 (467)
Q Consensus 205 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~--------------~~~~~~~~l~~~~~~~s~ 269 (467)
... . ...+ +.....+.+. -...+++|++|+++... .+..+...+ .....+.-
T Consensus 296 ~~~------~-----vGes-e~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l-~~~~~~V~ 362 (489)
T CHL00195 296 FGG------I-----VGES-ESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWL-SEKKSPVF 362 (489)
T ss_pred ccc------c-----cChH-HHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHH-hcCCCceE
Confidence 100 0 1111 1222222222 23578999999996310 011111122 12233445
Q ss_pred EEEecCChhh-----hhhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcH
Q 037625 270 VVFTTRFIGV-----CGSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPL 334 (467)
Q Consensus 270 iiiTtR~~~~-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl 334 (467)
||.||.+... .+.-..+..+.++..+.++-.++|..++......... ......+++.+.|.--
T Consensus 363 vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~--~~dl~~La~~T~GfSG 430 (489)
T CHL00195 363 VVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK--KYDIKKLSKLSNKFSG 430 (489)
T ss_pred EEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc--ccCHHHHHhhcCCCCH
Confidence 6667765432 1111345678888889999999999887653311100 1224566677776543
No 135
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.95 E-value=0.00049 Score=65.81 Aligned_cols=177 Identities=12% Similarity=0.035 Sum_probs=96.1
Q ss_pred HHHHHHHHHHhcCC-CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc-----CC
Q 037625 142 SQLEQVWRCLAEES-AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIG-----LV 215 (467)
Q Consensus 142 ~~~~~l~~~L~~~~-~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-----~~ 215 (467)
..-+++.+.+..++ ...+.++|+.|+||+++|..++..+.- ....+.. .++ .-.--+.+..... ..
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC-~~~~~~~---~Cg----~C~sC~~~~~g~HPD~~~i~ 80 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMC-QQPQGHK---SCG----HCRGCQLMQAGTHPDYYTLT 80 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcC-CCCCCCC---CCC----CCHHHHHHHcCCCCCEEEEe
Confidence 34566777777665 446789999999999999998877621 1100000 000 0000000000000 00
Q ss_pred CCCC-CCcCHHHHHHHHHHHh-----cCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEEecCC-hhhh-hhcCC
Q 037625 216 GDSW-KSRSVEEKALDIFRSL-----REKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVFTTRF-IGVC-GSMEA 285 (467)
Q Consensus 216 ~~~~-~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iiiTtR~-~~~~-~~~~~ 285 (467)
.+.. .....++ +..+.+.+ .+++-++|+|+++. ....+.+...+ -..+.++.+|++|.+ ..+. ...+.
T Consensus 81 p~~~~~~I~idq-iR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtL-EEPp~~t~fiL~t~~~~~lLpTIrSR 158 (334)
T PRK07993 81 PEKGKSSLGVDA-VREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTL-EEPPENTWFFLACREPARLLATLRSR 158 (334)
T ss_pred cccccccCCHHH-HHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHh-cCCCCCeEEEEEECChhhChHHHHhc
Confidence 0000 0111222 22233333 35667999999974 34455555555 333455666555554 4443 32344
Q ss_pred CcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHH
Q 037625 286 DRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLAL 336 (467)
Q Consensus 286 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 336 (467)
...+.+.+++.+++.+.+.+..+. + .+.+..++..++|.|...
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~~~-----~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 159 CRLHYLAPPPEQYALTWLSREVTM-----S---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred cccccCCCCCHHHHHHHHHHccCC-----C---HHHHHHHHHHcCCCHHHH
Confidence 457889999999999988764321 1 234678899999999743
No 136
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=0.00069 Score=64.01 Aligned_cols=176 Identities=12% Similarity=0.027 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhcCCC-cEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcC------
Q 037625 142 SQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGL------ 214 (467)
Q Consensus 142 ~~~~~l~~~L~~~~~-~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~------ 214 (467)
...+.+.+.+..++. ..+.++|+.|+||+++|..++..+.- ....+. ..+.-..-+.+......
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC-~~~~~~--------~Cg~C~sC~~~~~g~HPD~~~i~ 80 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLC-QNYQSE--------ACGFCHSCELMQSGNHPDLHVIK 80 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcC-CCCCCC--------CCCCCHHHHHHHcCCCCCEEEEe
Confidence 345666777766654 46899999999999999998876621 111000 00000100111000000
Q ss_pred CCCCCCCcCHHHHHHHHHHHh-----cCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEEecCC-hhhh-hhcCC
Q 037625 215 VGDSWKSRSVEEKALDIFRSL-----REKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVFTTRF-IGVC-GSMEA 285 (467)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iiiTtR~-~~~~-~~~~~ 285 (467)
+.........++. ..+.+.+ .++.-++|+|+++. ....+.+...+ -..+.++.+|++|.+ ..+. ...+.
T Consensus 81 p~~~~~~I~vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtL-EEPp~~t~fiL~t~~~~~lLpTI~SR 158 (319)
T PRK06090 81 PEKEGKSITVEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTL-EEPAPNCLFLLVTHNQKRLLPTIVSR 158 (319)
T ss_pred cCcCCCcCCHHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHh-cCCCCCeEEEEEECChhhChHHHHhc
Confidence 0000011122222 2333333 24556899999974 34555555555 333455666655554 4443 33344
Q ss_pred CcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHH
Q 037625 286 DRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITI 339 (467)
Q Consensus 286 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 339 (467)
-..+.+.+++.+++.+.+..... . ....++..++|.|+....+
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~~-----~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 159 CQQWVVTPPSTAQAMQWLKGQGI-----T------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ceeEeCCCCCHHHHHHHHHHcCC-----c------hHHHHHHHcCCCHHHHHHH
Confidence 56789999999999999876411 1 1346788999999976544
No 137
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.92 E-value=0.00036 Score=64.68 Aligned_cols=55 Identities=25% Similarity=0.282 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHH
Q 037625 143 QLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQ 205 (467)
Q Consensus 143 ~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 205 (467)
-++.+..++..+ ..+.|.|++|+|||+||+.+++.. .. ....++++...+..+++
T Consensus 10 l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l---g~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 10 VTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR---DR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh---CC---CEEEEeCCccCCHHHHh
Confidence 344555555443 467799999999999999998754 22 23455555555555543
No 138
>PRK08181 transposase; Validated
Probab=97.91 E-value=0.00024 Score=65.59 Aligned_cols=105 Identities=19% Similarity=0.176 Sum_probs=57.6
Q ss_pred HHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHH
Q 037625 149 RCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKA 228 (467)
Q Consensus 149 ~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 228 (467)
+|+. ...-+.|+|++|+|||.||..+.+... .....+.|++ ..++...+..... ......
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~------~~~L~~~l~~a~~-------~~~~~~-- 160 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTR------TTDLVQKLQVARR-------ELQLES-- 160 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeee------HHHHHHHHHHHHh-------CCcHHH--
Confidence 4554 334689999999999999999998772 2233455653 3455555543321 112222
Q ss_pred HHHHHHhcCCcEEEEeCCCCCh----hhhhhhccCCCCCCCCCceEEEecCCh
Q 037625 229 LDIFRSLREKRIVLLLDDIWER----VDLTKVGVPLSGPKNTTSKVVFTTRFI 277 (467)
Q Consensus 229 ~~l~~~l~~k~~LlVlDdv~~~----~~~~~~~~~l~~~~~~~s~iiiTtR~~ 277 (467)
+.+.+. +.-||||||+... .....+...+..... +..+||||...
T Consensus 161 --~l~~l~-~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~-~~s~IiTSN~~ 209 (269)
T PRK08181 161 --AIAKLD-KFDLLILDDLAYVTKDQAETSVLFELISARYE-RRSILITANQP 209 (269)
T ss_pred --HHHHHh-cCCEEEEeccccccCCHHHHHHHHHHHHHHHh-CCCEEEEcCCC
Confidence 222222 3459999999521 111223333211112 24688888754
No 139
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.88 E-value=0.00018 Score=61.40 Aligned_cols=135 Identities=18% Similarity=0.117 Sum_probs=72.4
Q ss_pred cchHHHHHHHHHHhcCCCc-EEEEEccCCCcHHHHHHHHHhcccCCCCC-----------------CCeEEEEEeCCCCC
Q 037625 139 GLQSQLEQVWRCLAEESAG-IIGLYGMGGVGKTTLLTHINNKFLESPTN-----------------FDCVIWVVVSKDLR 200 (467)
Q Consensus 139 Gr~~~~~~l~~~L~~~~~~-~i~I~G~~GiGKTtLa~~v~~~~~~~~~~-----------------f~~~~wv~~~~~~~ 200 (467)
|.+...+.|.+.+..++.+ .+.++|+.|+||+++|..+++.+...... .....|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-- 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK-- 78 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS--
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc--
Confidence 5567778888888877655 57999999999999999998877221111 111222211111
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh-----cCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEEe
Q 037625 201 LEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL-----REKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVFT 273 (467)
Q Consensus 201 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iiiT 273 (467)
......++. ..+...+ .++.=++|+|+++. ......+...+ -..+.++.+|++
T Consensus 79 ------------------~~~i~i~~i-r~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~L-Eepp~~~~fiL~ 138 (162)
T PF13177_consen 79 ------------------KKSIKIDQI-REIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTL-EEPPENTYFILI 138 (162)
T ss_dssp ------------------SSSBSHHHH-HHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHH-HSTTTTEEEEEE
T ss_pred ------------------cchhhHHHH-HHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHh-cCCCCCEEEEEE
Confidence 001122222 2333333 23567999999974 34455554444 344567888888
Q ss_pred cCChhh--hhhcCCCcccccCCCC
Q 037625 274 TRFIGV--CGSMEADRKFLVACLS 295 (467)
Q Consensus 274 tR~~~~--~~~~~~~~~~~l~~L~ 295 (467)
|++..- ....+....+.+.+++
T Consensus 139 t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 139 TNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp ES-GGGS-HHHHTTSEEEEE----
T ss_pred ECChHHChHHHHhhceEEecCCCC
Confidence 876543 2222333455555543
No 140
>PRK12377 putative replication protein; Provisional
Probab=97.88 E-value=6.1e-05 Score=68.55 Aligned_cols=73 Identities=27% Similarity=0.320 Sum_probs=45.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL 235 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 235 (467)
...+.|+|++|+|||+||..+++... .....+.++++ .+++..+...... ..... .+.+.+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~------~~l~~~l~~~~~~------~~~~~----~~l~~l 161 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTV------PDVMSRLHESYDN------GQSGE----KFLQEL 161 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEH------HHHHHHHHHHHhc------cchHH----HHHHHh
Confidence 46789999999999999999999882 23334566643 3455554433311 11111 223333
Q ss_pred cCCcEEEEeCCCC
Q 037625 236 REKRIVLLLDDIW 248 (467)
Q Consensus 236 ~~k~~LlVlDdv~ 248 (467)
.+--||||||+.
T Consensus 162 -~~~dLLiIDDlg 173 (248)
T PRK12377 162 -CKVDLLVLDEIG 173 (248)
T ss_pred -cCCCEEEEcCCC
Confidence 346699999994
No 141
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.88 E-value=0.00015 Score=72.13 Aligned_cols=187 Identities=14% Similarity=0.145 Sum_probs=110.0
Q ss_pred CccccchHHHHHHHHHHhcCC-CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 037625 135 RTVVGLQSQLEQVWRCLAEES-AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIG 213 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~-~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 213 (467)
++++|.+.-...|...+..++ .......|+.|+||||+|+.++.-+ .....- ...+.+-...-+.|...-.
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~Akal-NC~~~~-------~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKAL-NCENGP-------TAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHh-cCCCCC-------CCCcchhhhhhHhhhcCCc
Confidence 467999999999999998765 3457889999999999999998876 211110 0011111111112211100
Q ss_pred CCCCCC--CCcCHHHHHHHHHHHh-----cCCcEEEEeCCCC--ChhhhhhhccCCCCCCCCCceEEE-ecCChhh-hhh
Q 037625 214 LVGDSW--KSRSVEEKALDIFRSL-----REKRIVLLLDDIW--ERVDLTKVGVPLSGPKNTTSKVVF-TTRFIGV-CGS 282 (467)
Q Consensus 214 ~~~~~~--~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~--~~~~~~~~~~~l~~~~~~~s~iii-TtR~~~~-~~~ 282 (467)
...-.+ .....-+-++.+.+.. +++-=+.|+|+|+ +...+..+...+ -....+.+.|+ ||....+ ...
T Consensus 88 ~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTL-EEPP~hV~FIlATTe~~Kip~TI 166 (515)
T COG2812 88 IDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTL-EEPPSHVKFILATTEPQKIPNTI 166 (515)
T ss_pred ccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhccc-ccCccCeEEEEecCCcCcCchhh
Confidence 000000 0011112222333332 3455689999997 456777776666 34445565555 5544444 233
Q ss_pred cCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCc
Q 037625 283 MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLP 333 (467)
Q Consensus 283 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 333 (467)
.+....|.+..++.++....+...+.......+ .+....|++..+|..
T Consensus 167 lSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e---~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 167 LSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE---EDALSLIARAAEGSL 214 (515)
T ss_pred hhccccccccCCCHHHHHHHHHHHHHhcCCccC---HHHHHHHHHHcCCCh
Confidence 455678999999999999999998876653333 345566777777643
No 142
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.0012 Score=66.74 Aligned_cols=158 Identities=14% Similarity=0.160 Sum_probs=88.8
Q ss_pred CccccchHHHHHHHHHHhc------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHH
Q 037625 135 RTVVGLQSQLEQVWRCLAE------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDI 208 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 208 (467)
++-+|.++-+++|++++.- -+.++++.+||+|+|||++++.++..+ ...| +-++++.-.+..+|-..-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL---nRkF---fRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL---NRKF---FRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh---CCce---EEEeccccccHHhhcccc
Confidence 3459999999999999862 256799999999999999999999988 2222 234555555555542211
Q ss_pred HHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh---------hhhhhh---------ccCCCCCCCCCceE
Q 037625 209 GKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER---------VDLTKV---------GVPLSGPKNTTSKV 270 (467)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------~~~~~~---------~~~l~~~~~~~s~i 270 (467)
-.-+ ..-+..+++.|+.. +...-|+.||+|+.. ..+-++ ...+..-.-.=|+|
T Consensus 485 RTYV--------GAMPGkiIq~LK~v-~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 485 RTYV--------GAMPGKIIQCLKKV-KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred eeee--------ccCChHHHHHHHhh-CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhhe
Confidence 1111 11112223222222 345678889998641 111111 11110111123555
Q ss_pred EE-ecCCh-h-h-hhhcCCCcccccCCCCHHHHHHHHHHHh
Q 037625 271 VF-TTRFI-G-V-CGSMEADRKFLVACLSEKDAWELFREKV 307 (467)
Q Consensus 271 ii-TtR~~-~-~-~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 307 (467)
++ .|-|. . + .........|++.+...+|-..+-.+++
T Consensus 556 LFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 53 33221 1 1 1223445678888888888877777665
No 143
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.83 E-value=0.00012 Score=69.76 Aligned_cols=102 Identities=17% Similarity=0.191 Sum_probs=64.1
Q ss_pred HHHHHHHhc-CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCe-EEEEEeC-CCCCHHHHHHHHHHHhcCCCCCCCC
Q 037625 145 EQVWRCLAE-ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDC-VIWVVVS-KDLRLEKIQEDIGKKIGLVGDSWKS 221 (467)
Q Consensus 145 ~~l~~~L~~-~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~~ 221 (467)
.++++.+.. +....+.|+|++|+|||||++.+++... ..+.+. .+|+.+. +..++.++++.+...+.....+...
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 446666653 3344679999999999999999998772 223344 3555554 4567889999988877654321111
Q ss_pred cC---HHHHHHHHHHHh--cCCcEEEEeCCCC
Q 037625 222 RS---VEEKALDIFRSL--REKRIVLLLDDIW 248 (467)
Q Consensus 222 ~~---~~~~~~~l~~~l--~~k~~LlVlDdv~ 248 (467)
.. .........+.+ .++.++||+|++.
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 11 111112222222 5799999999985
No 144
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.81 E-value=0.00017 Score=77.02 Aligned_cols=172 Identities=19% Similarity=0.198 Sum_probs=92.1
Q ss_pred CccccchHHHHHHHHHHhc-------------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCH
Q 037625 135 RTVVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 201 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~-------------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 201 (467)
+++.|.+..+++|.+.+.- ...+.+.++|++|+|||+||+.+++.. ...| +.++.+
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~---i~i~~~----- 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF---ISINGP----- 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE---EEEecH-----
Confidence 3478999999888877631 123568899999999999999999876 2222 222211
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh-------------hhhhhhccCCCCCCCCCc
Q 037625 202 EKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER-------------VDLTKVGVPLSGPKNTTS 268 (467)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------------~~~~~~~~~l~~~~~~~s 268 (467)
++.. .. ...........+.....+.+.+|+||+++.. .....+...+......+.
T Consensus 247 -~i~~----~~-------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 247 -EIMS----KY-------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred -HHhc----cc-------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 1110 00 1111112222222333456789999998531 011222222211122233
Q ss_pred eEEE-ecCChh-hhhhc----CCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCc
Q 037625 269 KVVF-TTRFIG-VCGSM----EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLP 333 (467)
Q Consensus 269 ~iii-TtR~~~-~~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 333 (467)
.++| ||.... +...+ .....+.+...+.++-.+++...........+ .....+++.+.|..
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d----~~l~~la~~t~G~~ 381 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED----VDLDKLAEVTHGFV 381 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc----cCHHHHHHhCCCCC
Confidence 3444 454332 21111 12446778888888888888866543322211 12456777777764
No 145
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.78 E-value=8.1e-05 Score=66.82 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=29.6
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEe
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVV 195 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 195 (467)
.++|.|+.|+|||||+..+.... ...|..+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 57899999999999999999887 678877776654
No 146
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.77 E-value=0.0013 Score=66.55 Aligned_cols=203 Identities=15% Similarity=0.100 Sum_probs=126.2
Q ss_pred CCccccchHHHHHHHHHHhc-----CCCcEEEEEccCCCcHHHHHHHHHhcccCC--C---CCCCeEEEEEeCCCCCHHH
Q 037625 134 ERTVVGLQSQLEQVWRCLAE-----ESAGIIGLYGMGGVGKTTLLTHINNKFLES--P---TNFDCVIWVVVSKDLRLEK 203 (467)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~~-----~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~--~---~~f~~~~wv~~~~~~~~~~ 203 (467)
+..+-+|+.+..+|.+++.. +....+-|.|-+|+|||..+..|.+.+... . ..|+ .+.++.-+-..+.+
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 34567899999999988862 234488999999999999999999866311 1 2232 23344445567899
Q ss_pred HHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhc-----CCcEEEEeCCCCChhh--hhhhccCCCCCCCCCceEEEecCC
Q 037625 204 IQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLR-----EKRIVLLLDDIWERVD--LTKVGVPLSGPKNTTSKVVFTTRF 276 (467)
Q Consensus 204 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~s~iiiTtR~ 276 (467)
++..|..++... ........+.|..++. .+.+++++|+++..-. .+-+...|..+..++|+++|.+=.
T Consensus 474 ~Y~~I~~~lsg~-----~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 474 IYEKIWEALSGE-----RVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIA 548 (767)
T ss_pred HHHHHHHhcccC-----cccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEec
Confidence 999999998653 2344445555555553 3568999999863211 112222233456678887764321
Q ss_pred h--hhh-hhc-------CCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHHHH
Q 037625 277 I--GVC-GSM-------EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIGRA 342 (467)
Q Consensus 277 ~--~~~-~~~-------~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~ 342 (467)
. .+. ..+ -....+...|-+.++..++...++.+...-.....+=++++|+.-.|-.-.|+.+.-++
T Consensus 549 NTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 549 NTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred ccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 1 111 011 12245678888999999999888766543333334445667776666666666655444
No 147
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.0028 Score=56.45 Aligned_cols=165 Identities=18% Similarity=0.229 Sum_probs=88.7
Q ss_pred ccccchHHHHHHHHHHhc-------------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHH
Q 037625 136 TVVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 202 (467)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~-------------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 202 (467)
++-|.++.+++|...+-- ...+-+..+||+|.|||-+|+..+.+- +..| .
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT---~aTF--------------L 234 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT---NATF--------------L 234 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc---cchH--------------H
Confidence 456889999999988641 134568899999999999999988765 3333 1
Q ss_pred HHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhc-CCcEEEEeCCCCC-------------hhh---hhhhccCCCC-CC
Q 037625 203 KIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLR-EKRIVLLLDDIWE-------------RVD---LTKVGVPLSG-PK 264 (467)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~-------------~~~---~~~~~~~l~~-~~ 264 (467)
++..--+-++.. .+...++..-+..-+ ..+.+|.+|+++. .+. .-++...+.. ..
T Consensus 235 KLAgPQLVQMfI-------GdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss 307 (424)
T KOG0652|consen 235 KLAGPQLVQMFI-------GDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS 307 (424)
T ss_pred HhcchHHHhhhh-------cchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCC
Confidence 111111111111 111223333333333 4678999998742 111 1111111100 23
Q ss_pred CCCceEEEecCChhh-----hhhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHH
Q 037625 265 NTTSKVVFTTRFIGV-----CGSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQI 324 (467)
Q Consensus 265 ~~~s~iiiTtR~~~~-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~ 324 (467)
....+||..|..-.+ .+.-..++.++.+.-+++.-..++.-+........+-.++++++.
T Consensus 308 ~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRs 372 (424)
T KOG0652|consen 308 DDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARS 372 (424)
T ss_pred ccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhc
Confidence 345678876653333 232234456666554554444556555555555566667777654
No 148
>PRK08118 topology modulation protein; Reviewed
Probab=97.76 E-value=7.4e-05 Score=64.05 Aligned_cols=36 Identities=33% Similarity=0.574 Sum_probs=28.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEE
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIW 192 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~w 192 (467)
+.|.|+|++|+||||||+.+++...-...+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999987222356777776
No 149
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00041 Score=69.57 Aligned_cols=170 Identities=18% Similarity=0.203 Sum_probs=91.6
Q ss_pred ccccchHHHHHHHHHHhc-------------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHH
Q 037625 136 TVVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 202 (467)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~-------------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 202 (467)
++=|.++.+.+|.+.+.- ...+-|.++||+|+|||++|+.+++.. +-.| ++++..
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nF-----lsvkgp---- 502 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNF-----LSVKGP---- 502 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCe-----eeccCH----
Confidence 334466666666655431 245678999999999999999999986 4444 222211
Q ss_pred HHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCChh-------------hhhhhccCCCC-CCCCCc
Q 037625 203 KIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWERV-------------DLTKVGVPLSG-PKNTTS 268 (467)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~~~~~l~~-~~~~~s 268 (467)
+++... ...+...+...+.+.-+--+++|.||+++... .+..+...+.. ....+.
T Consensus 503 EL~sk~-----------vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V 571 (693)
T KOG0730|consen 503 ELFSKY-----------VGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNV 571 (693)
T ss_pred HHHHHh-----------cCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcE
Confidence 111111 11222222222222223457999999986311 12222222201 111223
Q ss_pred eEEE-ecCChhhh-hhcC---CCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCC
Q 037625 269 KVVF-TTRFIGVC-GSME---ADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGL 332 (467)
Q Consensus 269 ~iii-TtR~~~~~-~~~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 332 (467)
-||- |-|...+- ..+. .+..+.+++-+.+.-.++|+.++......+.-++.+ |++++.|.
T Consensus 572 ~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~----La~~T~g~ 636 (693)
T KOG0730|consen 572 LVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEE----LAQATEGY 636 (693)
T ss_pred EEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHH----HHHHhccC
Confidence 3333 44544442 2233 456777887888888899999987766444444454 44444443
No 150
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.76 E-value=0.0018 Score=61.91 Aligned_cols=91 Identities=16% Similarity=0.181 Sum_probs=57.2
Q ss_pred CCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEE-EecCChhhh-hhcCCCcccccCCCCHHHHHHHHHHHhCCCCC
Q 037625 237 EKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVV-FTTRFIGVC-GSMEADRKFLVACLSEKDAWELFREKVGEETL 312 (467)
Q Consensus 237 ~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~ii-iTtR~~~~~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~ 312 (467)
++.-++|+|+++. ....+.+...+ -..++++.+| +|++...+. ...+....+.+.+++.++..+.+... +.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtL-EEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~--- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTL-EEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GV--- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHh-cCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CC---
Confidence 4556888999974 35556665555 3344455555 455545443 33344468889999999999999875 11
Q ss_pred CCChhHHHHHHHHHHHhCCCcHHHHHH
Q 037625 313 KSDHDIAELAQIVANECGGLPLALITI 339 (467)
Q Consensus 313 ~~~~~~~~~~~~I~~~~~G~Plai~~~ 339 (467)
. + ...++..++|.|+....+
T Consensus 206 -~-~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 -A-D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -C-h-----HHHHHHHcCCCHHHHHHH
Confidence 1 1 123577889999854433
No 151
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.0011 Score=63.78 Aligned_cols=151 Identities=17% Similarity=0.152 Sum_probs=81.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLR 236 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 236 (467)
|=..++||||+|||+++.++++.+ .|+ ++=+.++...+-.+ ++.++.. .
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L-----~yd-IydLeLt~v~~n~d-Lr~LL~~------------------------t 284 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL-----NYD-IYDLELTEVKLDSD-LRHLLLA------------------------T 284 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc-----CCc-eEEeeeccccCcHH-HHHHHHh------------------------C
Confidence 447899999999999999999987 222 11122222222122 2222221 1
Q ss_pred CCcEEEEeCCCCChhh-----------------------hhhhccCCCCCCCCCceEE-EecCChhh-----hhhcCCCc
Q 037625 237 EKRIVLLLDDIWERVD-----------------------LTKVGVPLSGPKNTTSKVV-FTTRFIGV-----CGSMEADR 287 (467)
Q Consensus 237 ~k~~LlVlDdv~~~~~-----------------------~~~~~~~l~~~~~~~s~ii-iTtR~~~~-----~~~~~~~~ 287 (467)
..+.+||+.|++-..+ +-.+..-+ ...+.+=||| +||...+- .+.-..+.
T Consensus 285 ~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGl-wSscg~ERIivFTTNh~EkLDPALlRpGRmDm 363 (457)
T KOG0743|consen 285 PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGL-WSSCGDERIIVFTTNHKEKLDPALLRPGRMDM 363 (457)
T ss_pred CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccc-cccCCCceEEEEecCChhhcCHhhcCCCccee
Confidence 3467778888752110 11111111 1222234555 47764322 22112345
Q ss_pred ccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHHH-Hhcc
Q 037625 288 KFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIGR-AMAY 345 (467)
Q Consensus 288 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~-~l~~ 345 (467)
.+.+..-+.+.-..|+.+.++... ++ .++.+|.+...|.-+.=..++. +|..
T Consensus 364 hI~mgyCtf~~fK~La~nYL~~~~--~h----~L~~eie~l~~~~~~tPA~V~e~lm~~ 416 (457)
T KOG0743|consen 364 HIYMGYCTFEAFKTLASNYLGIEE--DH----RLFDEIERLIEETEVTPAQVAEELMKN 416 (457)
T ss_pred EEEcCCCCHHHHHHHHHHhcCCCC--Cc----chhHHHHHHhhcCccCHHHHHHHHhhc
Confidence 788999999999999999987643 12 3445555555555444444444 4444
No 152
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.75 E-value=0.00042 Score=63.98 Aligned_cols=171 Identities=18% Similarity=0.220 Sum_probs=101.3
Q ss_pred CccccchHHHHHHHHHHhc----CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCC-HHHHHHHHH
Q 037625 135 RTVVGLQSQLEQVWRCLAE----ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLR-LEKIQEDIG 209 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~----~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~ 209 (467)
..++|-.++..++..++.. +...-+.|+||.|.|||+|......+.++.+.+| +-+.+....- -.-.++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHHH
Confidence 3579999999999888864 4556788999999999999988877752233333 3333333221 122344455
Q ss_pred HHhcCCCC--CCCCcCHHHHHHHHHHHhcC------CcEEEEeCCCCCh------hhhhhhccCCCCCCCCCceEEEecC
Q 037625 210 KKIGLVGD--SWKSRSVEEKALDIFRSLRE------KRIVLLLDDIWER------VDLTKVGVPLSGPKNTTSKVVFTTR 275 (467)
Q Consensus 210 ~~l~~~~~--~~~~~~~~~~~~~l~~~l~~------k~~LlVlDdv~~~------~~~~~~~~~l~~~~~~~s~iiiTtR 275 (467)
.++..... .....+..+....+...|+. -++++|+|+++-. .-+-.+.........+-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 44432111 11223344555566666642 3589999988521 1112222222123445566778999
Q ss_pred Chhh-------hhhcCCCcccccCCCCHHHHHHHHHHHhC
Q 037625 276 FIGV-------CGSMEADRKFLVACLSEKDAWELFREKVG 308 (467)
Q Consensus 276 ~~~~-------~~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 308 (467)
-..+ ....+...++-+++++-++...++++.+.
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 5432 33333344666788889999999998874
No 153
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.74 E-value=0.00028 Score=75.15 Aligned_cols=46 Identities=20% Similarity=0.379 Sum_probs=37.2
Q ss_pred CccccchHHHHHHHHHHhc-------C--CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 135 RTVVGLQSQLEQVWRCLAE-------E--SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~-------~--~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++|.+..++.+...+.. . ...++.++|++|+|||+||+.++...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 4578999888888888762 1 23467899999999999999999876
No 154
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00081 Score=65.66 Aligned_cols=145 Identities=21% Similarity=0.195 Sum_probs=83.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRS 234 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 234 (467)
....+.+.|++|+|||+||..++.. +.|..+--++..+ ....+.......+.+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiSpe~---------------------miG~sEsaKc~~i~k~ 590 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIISPED---------------------MIGLSESAKCAHIKKI 590 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeChHH---------------------ccCccHHHHHHHHHHH
Confidence 3456889999999999999999875 3555444332111 1223334444444444
Q ss_pred h----cCCcEEEEeCCCCChhhhhhhcc------------CCCCCCCCCce--EEEecCChhhhhhcC----CCcccccC
Q 037625 235 L----REKRIVLLLDDIWERVDLTKVGV------------PLSGPKNTTSK--VVFTTRFIGVCGSME----ADRKFLVA 292 (467)
Q Consensus 235 l----~~k~~LlVlDdv~~~~~~~~~~~------------~l~~~~~~~s~--iiiTtR~~~~~~~~~----~~~~~~l~ 292 (467)
+ +..-..||+||++...+|-.+++ .+....+.|-| |+-||....+...|+ ....|.++
T Consensus 591 F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 591 FEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVP 670 (744)
T ss_pred HHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecC
Confidence 3 45668999999965444433332 22112233334 444777777766654 34578888
Q ss_pred CCCH-HHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHh
Q 037625 293 CLSE-KDAWELFREKVGEETLKSDHDIAELAQIVANEC 329 (467)
Q Consensus 293 ~L~~-~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~ 329 (467)
.++. ++..+.++..-- -.+.+.+..+.+...+|
T Consensus 671 nl~~~~~~~~vl~~~n~----fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEELNI----FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred ccCchHHHHHHHHHccC----CCcchhHHHHHHHhccc
Confidence 8876 777777765421 12333444555555555
No 155
>PRK10536 hypothetical protein; Provisional
Probab=97.71 E-value=0.00028 Score=63.79 Aligned_cols=43 Identities=14% Similarity=0.187 Sum_probs=35.9
Q ss_pred ccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 136 TVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+.++......+..++.+. .++.+.|++|+|||+||..+..+.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH
Confidence 3567888888888888664 499999999999999999988753
No 156
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.69 E-value=0.00069 Score=72.40 Aligned_cols=171 Identities=21% Similarity=0.261 Sum_probs=94.8
Q ss_pred CccccchHHHHHHHHHHhc-------------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCH
Q 037625 135 RTVVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 201 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~-------------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 201 (467)
..+.|.+..++.|.+.+.- ...+-+.++|++|+|||+||+.+++.. ...| +.+..
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f-----i~v~~---- 520 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF-----IAVRG---- 520 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEeh----
Confidence 3467877777777666531 123458899999999999999999986 3333 22221
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHH-hcCCcEEEEeCCCCCh--------------hhhhhhccCCCC-CCC
Q 037625 202 EKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRS-LREKRIVLLLDDIWER--------------VDLTKVGVPLSG-PKN 265 (467)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~--------------~~~~~~~~~l~~-~~~ 265 (467)
.+++. .. ...+ +..+..+... -...+.+|+||+++.. .....+...+.. ...
T Consensus 521 ~~l~~----~~-------vGes-e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 521 PEILS----KW-------VGES-EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred HHHhh----cc-------cCcH-HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 11111 10 1111 2223333333 3456899999998531 011222222200 122
Q ss_pred CCceEEEecCChhhh-h-hc---CCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCc
Q 037625 266 TTSKVVFTTRFIGVC-G-SM---EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLP 333 (467)
Q Consensus 266 ~~s~iiiTtR~~~~~-~-~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 333 (467)
.+..||.||...... . .. ..+..+.++..+.++-.++|+............+ ...+++.|.|.-
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 345566676544331 1 11 3456788888899999999987765443322222 345667787754
No 157
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.68 E-value=0.0016 Score=64.92 Aligned_cols=88 Identities=23% Similarity=0.334 Sum_probs=46.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHH
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK-DLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRS 234 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 234 (467)
..+++|+|++|+||||++..++.... .......+..++... .....+.+......++.... ...+...+...+ +.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la-~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL-~~ 425 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFA-AQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLL-ER 425 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHH-HH
Confidence 57999999999999999999887651 122223455554422 11222333333333433221 112223333333 33
Q ss_pred hcCCcEEEEeCCCC
Q 037625 235 LREKRIVLLLDDIW 248 (467)
Q Consensus 235 l~~k~~LlVlDdv~ 248 (467)
+.+ .=+|++|..-
T Consensus 426 l~~-~DLVLIDTaG 438 (559)
T PRK12727 426 LRD-YKLVLIDTAG 438 (559)
T ss_pred hcc-CCEEEecCCC
Confidence 333 4588899874
No 158
>PRK06526 transposase; Provisional
Probab=97.68 E-value=7.1e-05 Score=68.63 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
....+.|+|++|+|||+||..+.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 34568999999999999999998876
No 159
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.66 E-value=0.0015 Score=61.97 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=23.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
....++|||++|+|||.+|+.+++..
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999987
No 160
>PRK04296 thymidine kinase; Provisional
Probab=97.66 E-value=6.1e-05 Score=66.13 Aligned_cols=114 Identities=16% Similarity=0.059 Sum_probs=63.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLR 236 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 236 (467)
.++.|+|+.|.||||++..++.+. ......++.+. ...+.......++..++...+........+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~---~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY---EERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH---HHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 468899999999999999988876 22233344342 1111111133345555533222112334445555544 33
Q ss_pred CCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEEecCChhh
Q 037625 237 EKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVFTTRFIGV 279 (467)
Q Consensus 237 ~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iiiTtR~~~~ 279 (467)
++.-+||+|++.- ..+..++...+ ...|..||+|.++...
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l---~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL---DDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH---HHcCCeEEEEecCccc
Confidence 4556999999853 22233332222 4568899999987543
No 161
>PRK06921 hypothetical protein; Provisional
Probab=97.66 E-value=0.00016 Score=66.90 Aligned_cols=39 Identities=31% Similarity=0.377 Sum_probs=29.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEe
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVV 195 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 195 (467)
....+.++|++|+|||.|+..+++... ......++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEH
Confidence 356799999999999999999999872 121345666653
No 162
>PRK07261 topology modulation protein; Provisional
Probab=97.65 E-value=0.00016 Score=62.25 Aligned_cols=66 Identities=21% Similarity=0.397 Sum_probs=41.2
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcC
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLRE 237 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 237 (467)
.|+|+|++|+||||||+.+.....-..-+.|...|-.. +...+.++....+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~ 58 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-----------------------WQERDDDDMIADISNFLLK 58 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-----------------------cccCCHHHHHHHHHHHHhC
Confidence 48999999999999999998765111123444444211 1223344555566666666
Q ss_pred CcEEEEeCCCC
Q 037625 238 KRIVLLLDDIW 248 (467)
Q Consensus 238 k~~LlVlDdv~ 248 (467)
.+ .|+|+..
T Consensus 59 ~~--wIidg~~ 67 (171)
T PRK07261 59 HD--WIIDGNY 67 (171)
T ss_pred CC--EEEcCcc
Confidence 55 6778864
No 163
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.63 E-value=0.0014 Score=58.37 Aligned_cols=171 Identities=14% Similarity=0.240 Sum_probs=99.5
Q ss_pred CccccchHHHHH---HHHHHhcC------CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHH
Q 037625 135 RTVVGLQSQLEQ---VWRCLAEE------SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQ 205 (467)
Q Consensus 135 ~~~vGr~~~~~~---l~~~L~~~------~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 205 (467)
++++|.+..+.+ |+..|.++ ..+-|..+|++|+|||-+|+.+++.. +-.| +.+.. .++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~-----l~vka----t~l- 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPL-----LLVKA----TEL- 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCce-----EEech----HHH-
Confidence 567898876654 66677653 35789999999999999999999987 3332 11111 111
Q ss_pred HHHHHHhcCCCCCCCCcCHHHHHHHHHHHh-cCCcEEEEeCCCCCh--------------hhhhhhccCCCC-CCCCCce
Q 037625 206 EDIGKKIGLVGDSWKSRSVEEKALDIFRSL-REKRIVLLLDDIWER--------------VDLTKVGVPLSG-PKNTTSK 269 (467)
Q Consensus 206 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--------------~~~~~~~~~l~~-~~~~~s~ 269 (467)
|.+ ...+....++.+++.- +.-+|++.+|+++.. +..+.+..-+.. ..+.|..
T Consensus 188 --iGe---------hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 188 --IGE---------HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred --HHH---------HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 111 1223345555555554 347899999998521 112222222211 2344666
Q ss_pred EEEecCChhhhhh---cCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCc
Q 037625 270 VVFTTRFIGVCGS---MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLP 333 (467)
Q Consensus 270 iiiTtR~~~~~~~---~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 333 (467)
.|-.|.+..+... ......++...-+.+|-.+++...+..-....... .+.++++++|+.
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~S 319 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGMS 319 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCCC
Confidence 6666665554221 12345677777788899898888876543332222 445666666643
No 164
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.63 E-value=0.00051 Score=70.18 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=38.9
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++|.+..++.+...+.......+.|+|++|+|||++|+.+++..
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999888766656678999999999999999998653
No 165
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00013 Score=66.69 Aligned_cols=82 Identities=16% Similarity=0.218 Sum_probs=52.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhccc-CCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHH
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFL-ESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRS 234 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~-~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 234 (467)
-++|.++||+|.|||+|.+.+++++. +..+.+....-+.++ .+.++.+.... ..+....+.+++.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin----shsLFSKWFsE--------SgKlV~kmF~kI~EL 244 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN----SHSLFSKWFSE--------SGKLVAKMFQKIQEL 244 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe----hhHHHHHHHhh--------hhhHHHHHHHHHHHH
Confidence 47899999999999999999999882 112333333333332 33444444333 234556677777777
Q ss_pred hcCCc--EEEEeCCCCC
Q 037625 235 LREKR--IVLLLDDIWE 249 (467)
Q Consensus 235 l~~k~--~LlVlDdv~~ 249 (467)
++.+. +.+.+|+|..
T Consensus 245 v~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 245 VEDRGNLVFVLIDEVES 261 (423)
T ss_pred HhCCCcEEEEEeHHHHH
Confidence 76654 5667899854
No 166
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00052 Score=69.29 Aligned_cols=151 Identities=18% Similarity=0.109 Sum_probs=84.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCC--CHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL--RLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIF 232 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 232 (467)
..+.|.|.|+.|+|||+|++.+++... +.....+.+++++... .++.+++.+.. .+-
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~-------------------vfs 488 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLNN-------------------VFS 488 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHHH-------------------HHH
Confidence 345799999999999999999999982 4555556666665432 23333332221 222
Q ss_pred HHhcCCcEEEEeCCCCCh--------hh-----------hhhhccCCCCCCCCCc--eEEEecCChhhh-----hhcCCC
Q 037625 233 RSLREKRIVLLLDDIWER--------VD-----------LTKVGVPLSGPKNTTS--KVVFTTRFIGVC-----GSMEAD 286 (467)
Q Consensus 233 ~~l~~k~~LlVlDdv~~~--------~~-----------~~~~~~~l~~~~~~~s--~iiiTtR~~~~~-----~~~~~~ 286 (467)
..+...+.+|||||++-. .+ +.++...+ ...+. .+|.|.....-. ...-..
T Consensus 489 e~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y---~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq 565 (952)
T KOG0735|consen 489 EALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIY---LKRNRKIAVIATGQELQTLNPLLVSPLLFQ 565 (952)
T ss_pred HHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHH---HccCcEEEEEEechhhhhcChhhcCccceE
Confidence 345567899999998520 11 11222222 22333 344454432211 111123
Q ss_pred cccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCC
Q 037625 287 RKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGL 332 (467)
Q Consensus 287 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 332 (467)
....|.++...+-.++++..+..... ........-+..+|+|.
T Consensus 566 ~~~~L~ap~~~~R~~IL~~~~s~~~~---~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 566 IVIALPAPAVTRRKEILTTIFSKNLS---DITMDDLDFLSVKTEGY 608 (952)
T ss_pred EEEecCCcchhHHHHHHHHHHHhhhh---hhhhHHHHHHHHhcCCc
Confidence 45678888888887777776543221 11122333477888874
No 167
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.61 E-value=0.00024 Score=64.48 Aligned_cols=86 Identities=20% Similarity=0.271 Sum_probs=50.9
Q ss_pred HHHHHHHHhc--CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCC
Q 037625 144 LEQVWRCLAE--ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKS 221 (467)
Q Consensus 144 ~~~l~~~L~~--~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 221 (467)
+..+.++..+ .....+.++|.+|+|||+|+..+++.+. .....+++++ ..++...+...... ..
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it------~~~l~~~l~~~~~~-----~~ 150 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIIT------VADIMSAMKDTFSN-----SE 150 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEE------HHHHHHHHHHHHhh-----cc
Confidence 4444444432 2235789999999999999999999882 2234556663 45555555443321 11
Q ss_pred cCHHHHHHHHHHHhcCCcEEEEeCCCC
Q 037625 222 RSVEEKALDIFRSLREKRIVLLLDDIW 248 (467)
Q Consensus 222 ~~~~~~~~~l~~~l~~k~~LlVlDdv~ 248 (467)
.+. ..+.+.+. +.=||||||+.
T Consensus 151 ~~~----~~~l~~l~-~~dlLvIDDig 172 (244)
T PRK07952 151 TSE----EQLLNDLS-NVDLLVIDEIG 172 (244)
T ss_pred ccH----HHHHHHhc-cCCEEEEeCCC
Confidence 111 22334444 34588889995
No 168
>PRK09183 transposase/IS protein; Provisional
Probab=97.59 E-value=0.00018 Score=66.44 Aligned_cols=25 Identities=36% Similarity=0.395 Sum_probs=22.0
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+.|+|++|+|||+||..+++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999998775
No 169
>PRK04132 replication factor C small subunit; Provisional
Probab=97.59 E-value=0.0017 Score=68.84 Aligned_cols=157 Identities=12% Similarity=0.029 Sum_probs=94.8
Q ss_pred EEc--cCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcCC
Q 037625 161 LYG--MGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLREK 238 (467)
Q Consensus 161 I~G--~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k 238 (467)
+.| |.++||||+|..+++.+ -..+.-..++-++.++..+...+. ++........+ . -..+
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~----~------------~~~~ 630 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALAREL-FGENWRHNFLELNASDERGINVIR-EKVKEFARTKP----I------------GGAS 630 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCC----c------------CCCC
Confidence 447 88999999999999986 111122346667777655555443 33332211000 0 0124
Q ss_pred cEEEEeCCCCCh--hhhhhhccCCCCCCCCCceEEEecCCh-hhh-hhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCC
Q 037625 239 RIVLLLDDIWER--VDLTKVGVPLSGPKNTTSKVVFTTRFI-GVC-GSMEADRKFLVACLSEKDAWELFREKVGEETLKS 314 (467)
Q Consensus 239 ~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iiiTtR~~-~~~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~ 314 (467)
.-++|+|+++.. .....+...+ -..+..+++|++|.+. .+. ...+....+++.+++.++....+...+...+...
T Consensus 631 ~KVvIIDEaD~Lt~~AQnALLk~l-Eep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i 709 (846)
T PRK04132 631 FKIIFLDEADALTQDAQQALRRTM-EMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL 709 (846)
T ss_pred CEEEEEECcccCCHHHHHHHHHHh-hCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 579999999853 4555555554 2223456666655543 332 2233456889999999999988887765433222
Q ss_pred ChhHHHHHHHHHHHhCCCcHHHHHH
Q 037625 315 DHDIAELAQIVANECGGLPLALITI 339 (467)
Q Consensus 315 ~~~~~~~~~~I~~~~~G~Plai~~~ 339 (467)
+ .+....|++.|+|.+.....+
T Consensus 710 ~---~e~L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 710 T---EEGLQAILYIAEGDMRRAINI 731 (846)
T ss_pred C---HHHHHHHHHHcCCCHHHHHHH
Confidence 2 357789999999988544433
No 170
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.58 E-value=0.00044 Score=74.62 Aligned_cols=46 Identities=28% Similarity=0.407 Sum_probs=37.6
Q ss_pred CccccchHHHHHHHHHHhc-------CC--CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 135 RTVVGLQSQLEQVWRCLAE-------ES--AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~-------~~--~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++|.+..++.+...+.. .+ ..++.++|++|+|||+||+.+++..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999888888752 11 2468899999999999999999876
No 171
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.57 E-value=0.00021 Score=76.82 Aligned_cols=47 Identities=26% Similarity=0.376 Sum_probs=38.5
Q ss_pred CCccccchHHHHHHHHHHhc-------C--CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 134 ERTVVGLQSQLEQVWRCLAE-------E--SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~~-------~--~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...++|.+..++.+.+.+.. + ...++.++||+|+|||.||+.++..+
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999888752 1 23468999999999999999998876
No 172
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00024 Score=73.72 Aligned_cols=115 Identities=21% Similarity=0.260 Sum_probs=72.1
Q ss_pred CccccchHHHHHHHHHHhc-------C--CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHH
Q 037625 135 RTVVGLQSQLEQVWRCLAE-------E--SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQ 205 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~-------~--~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 205 (467)
..++|.+..++.+.+.+.. + ..+.....||.|||||-||+.++..+ .+.-+..+-++.|....-+.+-
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEYMEKHSVS 567 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHHHHHHHHH
Confidence 4689999999999998862 1 34567789999999999999999887 3333555666555544333332
Q ss_pred HHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcE-EEEeCCCCC--hhhhhhhccCC
Q 037625 206 EDIGKKIGLVGDSWKSRSVEEKALDIFRSLREKRI-VLLLDDIWE--RVDLTKVGVPL 260 (467)
Q Consensus 206 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~--~~~~~~~~~~l 260 (467)
+- +|.+ ++....+. .-.|-+..+.++| +|.||+|+. .+.++-+.+.+
T Consensus 568 rL----IGaP-PGYVGyee---GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVl 617 (786)
T COG0542 568 RL----IGAP-PGYVGYEE---GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVL 617 (786)
T ss_pred HH----hCCC-CCCceecc---ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHh
Confidence 22 2221 11111111 2345566677776 889999974 34455444443
No 173
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.55 E-value=0.0003 Score=75.85 Aligned_cols=131 Identities=18% Similarity=0.238 Sum_probs=72.7
Q ss_pred CCccccchHHHHHHHHHHhc-------CC--CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHH
Q 037625 134 ERTVVGLQSQLEQVWRCLAE-------ES--AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKI 204 (467)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~~-------~~--~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 204 (467)
...++|.+..++.+...+.. .+ ...+.++||.|+|||+||+.+++.+ .......+.++.+...+...+
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l---~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF---FGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh---cCCccceEEEEchhccccccH
Confidence 35689999999999888752 11 2356799999999999999999876 222233444554443322222
Q ss_pred HHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcCCc-EEEEeCCCCC--hhhhhhhccCCCCC-----------CCCCceE
Q 037625 205 QEDIGKKIGLVGDSWKSRSVEEKALDIFRSLREKR-IVLLLDDIWE--RVDLTKVGVPLSGP-----------KNTTSKV 270 (467)
Q Consensus 205 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~--~~~~~~~~~~l~~~-----------~~~~s~i 270 (467)
.+ -++.+ ++....+. ...+.+.++.++ .+++||+++. ...++.+...+ .. .-.++.+
T Consensus 585 ~~----l~g~~-~gyvg~~~---~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~l-e~g~~~d~~g~~v~~~~~i~ 655 (821)
T CHL00095 585 SK----LIGSP-PGYVGYNE---GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQIL-DDGRLTDSKGRTIDFKNTLI 655 (821)
T ss_pred HH----hcCCC-CcccCcCc---cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHh-ccCceecCCCcEEecCceEE
Confidence 11 12211 11111111 112344444444 6999999974 33344443333 11 1245667
Q ss_pred EEecCC
Q 037625 271 VFTTRF 276 (467)
Q Consensus 271 iiTtR~ 276 (467)
|+||..
T Consensus 656 I~Tsn~ 661 (821)
T CHL00095 656 IMTSNL 661 (821)
T ss_pred EEeCCc
Confidence 777774
No 174
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.55 E-value=0.00034 Score=59.61 Aligned_cols=39 Identities=28% Similarity=0.459 Sum_probs=30.6
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCC
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL 199 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~ 199 (467)
++.|+|++|+||||++..++... ......++|++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcch
Confidence 36899999999999999998887 2345567788776554
No 175
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00084 Score=65.65 Aligned_cols=45 Identities=27% Similarity=0.361 Sum_probs=35.0
Q ss_pred ccccchH---HHHHHHHHHhcC--------C-CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 136 TVVGLQS---QLEQVWRCLAEE--------S-AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 136 ~~vGr~~---~~~~l~~~L~~~--------~-~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
++-|.++ ++++|+++|.++ + .+=|.++||+|.|||-||++++-..
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 4566654 567778888764 1 3458899999999999999999876
No 176
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.52 E-value=0.0023 Score=61.45 Aligned_cols=40 Identities=23% Similarity=0.472 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHhc---CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 141 QSQLEQVWRCLAE---ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 141 ~~~~~~l~~~L~~---~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+.-.+.|.+.+.+ +...+|+|.|+=|+||||+.+.+.+.+
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445666777764 356789999999999999999999988
No 177
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.003 Score=55.85 Aligned_cols=167 Identities=16% Similarity=0.209 Sum_probs=90.9
Q ss_pred cccc-chHHHHHHHHHHhc-------------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCH
Q 037625 136 TVVG-LQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 201 (467)
Q Consensus 136 ~~vG-r~~~~~~l~~~L~~-------------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 201 (467)
..+| .+..+++|.+.+.- .+.+-+.++|++|.|||-||+.++++- ...|+.+|..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgs--- 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGS--- 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechH---
Confidence 3455 56667776665531 145668899999999999999999876 2334555543
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh-cCCcEEEEeCCCCCh-------------hhhh---hhccCC-CCC
Q 037625 202 EKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL-REKRIVLLLDDIWER-------------VDLT---KVGVPL-SGP 263 (467)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-------------~~~~---~~~~~l-~~~ 263 (467)
++.+..... .......++-.- ..-+.+|..|++++. +... ++...+ .-.
T Consensus 216 -elvqk~ige------------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfe 282 (404)
T KOG0728|consen 216 -ELVQKYIGE------------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFE 282 (404)
T ss_pred -HHHHHHhhh------------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccc
Confidence 222211110 011222222211 345788888888531 1111 111111 013
Q ss_pred CCCCceEEEecCChhhh-----hhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHH
Q 037625 264 KNTTSKVVFTTRFIGVC-----GSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVA 326 (467)
Q Consensus 264 ~~~~s~iiiTtR~~~~~-----~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~ 326 (467)
..++.+||+.|..-++. +--.-+..++.++-+.+.-.++++-+....+...--++..++.++.
T Consensus 283 atknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~ 350 (404)
T KOG0728|consen 283 ATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMP 350 (404)
T ss_pred cccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCC
Confidence 45677888877543331 1112345788888888887888877665544333334454444443
No 178
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0022 Score=66.32 Aligned_cols=175 Identities=18% Similarity=0.202 Sum_probs=100.9
Q ss_pred CccccchHHHHHH---HHHHhcC---------CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHH
Q 037625 135 RTVVGLQSQLEQV---WRCLAEE---------SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 202 (467)
Q Consensus 135 ~~~vGr~~~~~~l---~~~L~~~---------~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 202 (467)
.++.|.++.+++| +++|.++ -.+=+.++||+|+|||-||++++-.. .=. |++++...
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA---gVP-----F~svSGSE--- 379 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVP-----FFSVSGSE--- 379 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc---CCc-----eeeechHH---
Confidence 4678887665555 4555543 13458899999999999999999876 222 34444331
Q ss_pred HHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh-cCCcEEEEeCCCCCh-----------------hhhhhhccCCCCCC
Q 037625 203 KIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL-REKRIVLLLDDIWER-----------------VDLTKVGVPLSGPK 264 (467)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-----------------~~~~~~~~~l~~~~ 264 (467)
..+-+... ....+..+...- .+.++++.+|+++.. ..++++..-.-...
T Consensus 380 -----FvE~~~g~--------~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 380 -----FVEMFVGV--------GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred -----HHHHhccc--------chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 11111100 023333344433 356889999988531 12333322221111
Q ss_pred -CCCceEEEecCChhh-h-hhc---CCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHH
Q 037625 265 -NTTSKVVFTTRFIGV-C-GSM---EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLAL 336 (467)
Q Consensus 265 -~~~s~iiiTtR~~~~-~-~~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 336 (467)
..+.-++-+|+..++ + ..+ ..++.+.++.-+.....++|.-++...... .+..++.+ |+..+.|.+=|.
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHHH
Confidence 122333445554433 1 112 245678888889999999999988766533 33455665 888898888654
No 179
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0012 Score=65.58 Aligned_cols=152 Identities=20% Similarity=0.255 Sum_probs=87.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh-
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL- 235 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l- 235 (467)
.=|.+|||+|+|||-||++|+|.. +-+| +++... +++.... ..+ +..+..+++.-
T Consensus 546 sGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----ELlNkYV-----------GES-ErAVR~vFqRAR 601 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----ELLNKYV-----------GES-ERAVRQVFQRAR 601 (802)
T ss_pred CceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----HHHHHHh-----------hhH-HHHHHHHHHHhh
Confidence 348899999999999999999986 5555 333322 2222211 111 23333344433
Q ss_pred cCCcEEEEeCCCCCh-------------hhhhhhccCCC-CCCCCCceEEEecCChhh-h-hhcC---CCcccccCCCCH
Q 037625 236 REKRIVLLLDDIWER-------------VDLTKVGVPLS-GPKNTTSKVVFTTRFIGV-C-GSME---ADRKFLVACLSE 296 (467)
Q Consensus 236 ~~k~~LlVlDdv~~~-------------~~~~~~~~~l~-~~~~~~s~iiiTtR~~~~-~-~~~~---~~~~~~l~~L~~ 296 (467)
..-+++|.||+++.. ...+++..-+- .....|.-||-.|..+++ - ..+. .+..+-+..-+.
T Consensus 602 ~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~ 681 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNA 681 (802)
T ss_pred cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCH
Confidence 457999999999631 11223322221 123456667765554433 1 1122 344566777888
Q ss_pred HHHHHHHHHHhCC--CCCCCChhHHHHHHHHHHHhCCCcH
Q 037625 297 KDAWELFREKVGE--ETLKSDHDIAELAQIVANECGGLPL 334 (467)
Q Consensus 297 ~e~~~lf~~~~~~--~~~~~~~~~~~~~~~I~~~~~G~Pl 334 (467)
+|-.++++..... .....+-++.+++.. .+|.|..-
T Consensus 682 ~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gftG 719 (802)
T KOG0733|consen 682 EERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFTG 719 (802)
T ss_pred HHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCch
Confidence 9999999988873 334455566766644 35666554
No 180
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.50 E-value=0.00017 Score=59.72 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=31.8
Q ss_pred ccchHHHHHHHHHHhc--CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 138 VGLQSQLEQVWRCLAE--ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 138 vGr~~~~~~l~~~L~~--~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
||....++++.+.+.. .....|.|+|+.|+||+++|+.+++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 4666777777776653 345678999999999999999988875
No 181
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.49 E-value=0.00065 Score=73.57 Aligned_cols=61 Identities=25% Similarity=0.323 Sum_probs=45.0
Q ss_pred CccccchHHHHHHHHHHhcC---------CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCC
Q 037625 135 RTVVGLQSQLEQVWRCLAEE---------SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD 198 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~---------~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~ 198 (467)
..++|.+..++.+.+.+... ....+.++|++|+|||++|+.+.... .......+.++.+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l---~~~~~~~i~~d~s~~ 634 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL---FDDEDAMVRIDMSEY 634 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---cCCCCcEEEEechhh
Confidence 45899999999999888631 13468899999999999999999876 222334455555543
No 182
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.49 E-value=0.0042 Score=59.24 Aligned_cols=69 Identities=16% Similarity=0.150 Sum_probs=39.7
Q ss_pred CCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEEecCChh-hhhh-cCCCcccccCCCCHHHHHHHHHHH
Q 037625 237 EKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVFTTRFIG-VCGS-MEADRKFLVACLSEKDAWELFREK 306 (467)
Q Consensus 237 ~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iiiTtR~~~-~~~~-~~~~~~~~l~~L~~~e~~~lf~~~ 306 (467)
+++-++|+|++.. ......+...+..+ ..++.+|++|.+.. +... .+....+.+.+++.+++.+.+.+.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep-~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEP-PPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhC-cCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3444556688863 23333333333112 24566676776644 3222 233457889999999999988764
No 183
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.47 E-value=0.00093 Score=67.48 Aligned_cols=55 Identities=25% Similarity=0.415 Sum_probs=42.2
Q ss_pred CccccchHHHHHHHHHHhcC-----CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEE
Q 037625 135 RTVVGLQSQLEQVWRCLAEE-----SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVV 194 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~-----~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 194 (467)
.+++--.+.++++..||.+. ..+++.++||+|+||||.++.+++.. .|+..-|.+
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 34455567788888888742 35789999999999999999999876 456666754
No 184
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.47 E-value=0.00051 Score=62.19 Aligned_cols=89 Identities=21% Similarity=0.226 Sum_probs=51.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHH-hcC---CCCCCCCcCHH---HH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKK-IGL---VGDSWKSRSVE---EK 227 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~---~~~~~~~~~~~---~~ 227 (467)
...++.|+|++|+|||+++.+++.... .....++|++.. ..+...+. ++... ... ...-....+.. +.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEA 96 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence 356899999999999999999988762 234678898887 44444432 22221 000 00000112222 23
Q ss_pred HHHHHHHhcCCcEEEEeCCCC
Q 037625 228 ALDIFRSLREKRIVLLLDDIW 248 (467)
Q Consensus 228 ~~~l~~~l~~k~~LlVlDdv~ 248 (467)
...+...+..+.-++|+|.+.
T Consensus 97 i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 97 IRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHHhcccEEEEeCcH
Confidence 333444444566789999873
No 185
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.47 E-value=0.0013 Score=63.21 Aligned_cols=44 Identities=25% Similarity=0.302 Sum_probs=36.3
Q ss_pred cccchHHHHHHHHHHhc-CCCcE-EEEEccCCCcHHHHHHHHHhcc
Q 037625 137 VVGLQSQLEQVWRCLAE-ESAGI-IGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 137 ~vGr~~~~~~l~~~L~~-~~~~~-i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
++|-+.....+..+..+ ++.+. +.++|++|+||||+|..+++.+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l 48 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKEL 48 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHH
Confidence 56777778888888773 44555 9999999999999999999887
No 186
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.47 E-value=0.0002 Score=68.16 Aligned_cols=102 Identities=20% Similarity=0.243 Sum_probs=55.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL 235 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 235 (467)
...+.++|++|+|||.||..+++... .....++|++. .+++..+...-. . ...+.... .+.+
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~---~~g~~V~y~t~------~~l~~~l~~~~~-~----~~~~~~~~----~~~l 244 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL---DRGKSVIYRTA------DELIEILREIRF-N----NDKELEEV----YDLL 244 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEEH------HHHHHHHHHHHh-c----cchhHHHH----HHHh
Confidence 36799999999999999999999872 22335666643 334443332211 0 01111111 2333
Q ss_pred cCCcEEEEeCCCCC----hhhhhhhccCCCCCCCCCceEEEecCC
Q 037625 236 REKRIVLLLDDIWE----RVDLTKVGVPLSGPKNTTSKVVFTTRF 276 (467)
Q Consensus 236 ~~k~~LlVlDdv~~----~~~~~~~~~~l~~~~~~~s~iiiTtR~ 276 (467)
.+ -=||||||+.. ......+...+......+..+||||..
T Consensus 245 ~~-~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 245 IN-CDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred cc-CCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 32 34899999942 222233333331122335568888874
No 187
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.46 E-value=0.0071 Score=58.35 Aligned_cols=88 Identities=23% Similarity=0.304 Sum_probs=50.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHH
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK-DLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRS 234 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 234 (467)
..++.++|+.|+||||++..++..... ......+.+++... .....+-+....+.++.+... ..+..++.. ....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~-~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~--~~~~~~l~~-~l~~ 212 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVM-RFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA--VKDGGDLQL-ALAE 212 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe--cCCcccHHH-HHHH
Confidence 469999999999999999999887511 11123455555332 223445556666666654321 112222222 2233
Q ss_pred hcCCcEEEEeCCCC
Q 037625 235 LREKRIVLLLDDIW 248 (467)
Q Consensus 235 l~~k~~LlVlDdv~ 248 (467)
+.++ -++++|..-
T Consensus 213 l~~~-DlVLIDTaG 225 (374)
T PRK14722 213 LRNK-HMVLIDTIG 225 (374)
T ss_pred hcCC-CEEEEcCCC
Confidence 4444 456699884
No 188
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.44 E-value=0.00011 Score=63.74 Aligned_cols=73 Identities=26% Similarity=0.416 Sum_probs=42.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRS 234 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 234 (467)
+..-+.|+|++|+|||.||..+.+.... .-..+.|++ ..+++..+-..- ....... +.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~---~g~~v~f~~------~~~L~~~l~~~~-------~~~~~~~----~~~~ 105 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR---KGYSVLFIT------ASDLLDELKQSR-------SDGSYEE----LLKR 105 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH---TT--EEEEE------HHHHHHHHHCCH-------CCTTHCH----HHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc---CCcceeEee------cCceeccccccc-------cccchhh----hcCc
Confidence 3457999999999999999999988732 233456664 445555543221 1111222 2233
Q ss_pred hcCCcEEEEeCCCC
Q 037625 235 LREKRIVLLLDDIW 248 (467)
Q Consensus 235 l~~k~~LlVlDdv~ 248 (467)
+.+ -=||||||+.
T Consensus 106 l~~-~dlLilDDlG 118 (178)
T PF01695_consen 106 LKR-VDLLILDDLG 118 (178)
T ss_dssp HHT-SSCEEEETCT
T ss_pred ccc-ccEecccccc
Confidence 333 3578899995
No 189
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.40 E-value=0.00027 Score=67.10 Aligned_cols=45 Identities=22% Similarity=0.396 Sum_probs=40.0
Q ss_pred ccccchHHHHHHHHHHhc------CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 136 TVVGLQSQLEQVWRCLAE------ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~------~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.++|.++.++++.+++.. ...+++.|+|++|+||||||+.+++.+
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999864 245789999999999999999999988
No 190
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.39 E-value=0.00057 Score=60.02 Aligned_cols=129 Identities=16% Similarity=0.134 Sum_probs=61.4
Q ss_pred cchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCC--C-------CH----HHHH
Q 037625 139 GLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD--L-------RL----EKIQ 205 (467)
Q Consensus 139 Gr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~--~-------~~----~~~~ 205 (467)
.+..+-...++.|. ...++.+.|++|+|||.||...+-+. -..+.++.++++.-.-. . +. ...+
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 34455566666666 45699999999999999998877655 23477887777642111 0 00 0111
Q ss_pred HHHHHHhcCCCCCCCCcCHHHHHHH------HHHHhcC---CcEEEEeCCCCCh--hhhhhhccCCCCCCCCCceEEEec
Q 037625 206 EDIGKKIGLVGDSWKSRSVEEKALD------IFRSLRE---KRIVLLLDDIWER--VDLTKVGVPLSGPKNTTSKVVFTT 274 (467)
Q Consensus 206 ~~i~~~l~~~~~~~~~~~~~~~~~~------l~~~l~~---k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iiiTt 274 (467)
..+...+.... .....+.+... -..++++ +..+||+|++.+. .++..+. ...+.+|++|++-
T Consensus 81 ~p~~d~l~~~~---~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~il----TR~g~~skii~~G 153 (205)
T PF02562_consen 81 RPIYDALEELF---GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMIL----TRIGEGSKIIITG 153 (205)
T ss_dssp HHHHHHHTTTS----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHH----TTB-TT-EEEEEE
T ss_pred HHHHHHHHHHh---ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHH----cccCCCcEEEEec
Confidence 11122221110 11112222111 0122344 3579999999653 5566553 3457899999987
Q ss_pred CCh
Q 037625 275 RFI 277 (467)
Q Consensus 275 R~~ 277 (467)
-..
T Consensus 154 D~~ 156 (205)
T PF02562_consen 154 DPS 156 (205)
T ss_dssp ---
T ss_pred Cce
Confidence 654
No 191
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.38 E-value=0.00073 Score=63.79 Aligned_cols=117 Identities=26% Similarity=0.282 Sum_probs=65.0
Q ss_pred cchHHHHHHHHHHhc----CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 037625 139 GLQSQLEQVWRCLAE----ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGL 214 (467)
Q Consensus 139 Gr~~~~~~l~~~L~~----~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 214 (467)
++....+...+++.+ ...+-+.|+|+.|+|||.||..+++... ..-..+.|+++ .+++..+......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~---~~g~~v~~~~~------~~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA---KKGVSSTLLHF------PEFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCEEEEEH------HHHHHHHHHHHhc
Confidence 454445555555542 1345789999999999999999999982 22234555543 3555555544421
Q ss_pred CCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCC--hhhhh--hh-ccCCCCCCCCCceEEEecCC
Q 037625 215 VGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWE--RVDLT--KV-GVPLSGPKNTTSKVVFTTRF 276 (467)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~--~~-~~~l~~~~~~~s~iiiTtR~ 276 (467)
.+.. ...+.+. +-=||||||+.. ...|. .+ ...+...-..+..+|+||..
T Consensus 206 -------~~~~----~~l~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 206 -------GSVK----EKIDAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred -------CcHH----HHHHHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1112 2222233 456899999952 23343 22 22221111245567777763
No 192
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.35 E-value=0.00065 Score=60.74 Aligned_cols=89 Identities=12% Similarity=0.142 Sum_probs=53.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHh-cCCCCC---CCCcC---HHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKI-GLVGDS---WKSRS---VEEK 227 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-~~~~~~---~~~~~---~~~~ 227 (467)
...++.|+|++|+|||+++.+++... ......++|++... .....+... +... ...... ....+ ....
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDTEG-LSPERFKQI-AEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECCC-CCHHHHHHH-HHhChHHHhcCEEEEECCCHHHHHHH
Confidence 35689999999999999999988776 23356889998875 555554432 2221 000000 01112 2233
Q ss_pred HHHHHHHhcC-CcEEEEeCCCC
Q 037625 228 ALDIFRSLRE-KRIVLLLDDIW 248 (467)
Q Consensus 228 ~~~l~~~l~~-k~~LlVlDdv~ 248 (467)
...+...+.. +.-+||+|.+.
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcH
Confidence 4445554543 56688999874
No 193
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.34 E-value=0.00016 Score=58.36 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=21.6
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+|+|.|++|+||||+|+.+++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999976
No 194
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.34 E-value=0.0023 Score=66.98 Aligned_cols=169 Identities=20% Similarity=0.190 Sum_probs=88.4
Q ss_pred ccccchHHHHHHHHHH---hcC---------CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHH
Q 037625 136 TVVGLQSQLEQVWRCL---AEE---------SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEK 203 (467)
Q Consensus 136 ~~vGr~~~~~~l~~~L---~~~---------~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 203 (467)
++.|.+..++++.+.+ .+. -.+-+.|+|++|+|||++|+.+++.. ...| +.++.+ +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~------~ 220 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGS------D 220 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehH------H
Confidence 4567666655554443 221 12348999999999999999999876 3232 222211 1
Q ss_pred HHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCChh----------------hhhhhccCCCC-CCCC
Q 037625 204 IQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWERV----------------DLTKVGVPLSG-PKNT 266 (467)
Q Consensus 204 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~~~~~l~~-~~~~ 266 (467)
+.. .. ...........+.......+++|++|+++... .+..+...+.. ....
T Consensus 221 ~~~----~~-------~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~ 289 (644)
T PRK10733 221 FVE----MF-------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 289 (644)
T ss_pred hHH----hh-------hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCC
Confidence 111 00 01111222222223334578999999986421 11222111101 1233
Q ss_pred CceEEEecCChhhhh--hc---CCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCC
Q 037625 267 TSKVVFTTRFIGVCG--SM---EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGG 331 (467)
Q Consensus 267 ~s~iiiTtR~~~~~~--~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G 331 (467)
+..+|.||....... .. ..+..+.+...+.++-.+++..++.......+.++ ..+++.+.|
T Consensus 290 ~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~----~~la~~t~G 355 (644)
T PRK10733 290 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDA----AIIARGTPG 355 (644)
T ss_pred CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCH----HHHHhhCCC
Confidence 455566776554311 11 23567788888888888998887765432222222 235555555
No 195
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.33 E-value=0.002 Score=58.33 Aligned_cols=93 Identities=16% Similarity=0.190 Sum_probs=54.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCC---CCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC-------CCCcCH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESP---TNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDS-------WKSRSV 224 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 224 (467)
...++.|+|++|+|||+|+.+++....... +.-..++|++....++...+. .+....+..... ....+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYNG 96 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCCH
Confidence 356899999999999999999877651110 112567899887766655543 333332211000 012344
Q ss_pred HHHHHHHHHHhc----CCcEEEEeCCCC
Q 037625 225 EEKALDIFRSLR----EKRIVLLLDDIW 248 (467)
Q Consensus 225 ~~~~~~l~~~l~----~k~~LlVlDdv~ 248 (467)
++....+..... .+.-|+|+|.+.
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 97 EQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 455544444432 355689999974
No 196
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.014 Score=59.91 Aligned_cols=91 Identities=22% Similarity=0.310 Sum_probs=57.3
Q ss_pred CccccchHHHHHHHHHHhc---------C---CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHH
Q 037625 135 RTVVGLQSQLEQVWRCLAE---------E---SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 202 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~---------~---~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 202 (467)
+++=|.++-+.+|.+-+.- . +..=|.+||++|+|||-||++|+-.. .- -|+++..+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc---sL-----~FlSVKGP---- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC---SL-----NFLSVKGP---- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc---ee-----eEEeecCH----
Confidence 4566788888888887752 1 23458899999999999999999887 22 23444333
Q ss_pred HHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh-cCCcEEEEeCCCCC
Q 037625 203 KIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL-REKRIVLLLDDIWE 249 (467)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~ 249 (467)
+++.... | .+ ++-++.+++.- ..++|+|.||++++
T Consensus 740 ELLNMYV---G--------qS-E~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ELLNMYV---G--------QS-EENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHHHHHh---c--------ch-HHHHHHHHHHhhccCCeEEEeccccc
Confidence 2222111 1 11 22233333333 34899999999974
No 197
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.32 E-value=0.0012 Score=60.08 Aligned_cols=88 Identities=14% Similarity=0.172 Sum_probs=55.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC----------------
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDS---------------- 218 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------------- 218 (467)
...++.|+|++|+|||+|+.++.... ...-..++|++.... ..++.+.+ .+++.....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~---~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA---LKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH---HhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 45689999999999999999986654 123557888887644 44554443 333321110
Q ss_pred --CCCcCHHHHHHHHHHHhcC-CcEEEEeCCCC
Q 037625 219 --WKSRSVEEKALDIFRSLRE-KRIVLLLDDIW 248 (467)
Q Consensus 219 --~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 248 (467)
....+.+.....+.+.+.. +.-++|+|.+.
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0122335566666666653 66689999974
No 198
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.31 E-value=0.00047 Score=60.95 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=59.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHH-HHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE-KIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL 235 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 235 (467)
+++.|.|+.|+||||++..+.... .......++. +.++.... .-...+..+-. ...+.......++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t-~e~~~E~~~~~~~~~i~q~~------vg~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILT-IEDPIEFVHESKRSLINQRE------VGLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEE-EcCCccccccCccceeeecc------cCCCccCHHHHHHHHh
Confidence 578999999999999999888776 2222333332 22211100 00000000000 0111223445566777
Q ss_pred cCCcEEEEeCCCCChhhhhhhccCCCCCCCCCceEEEecCChhh
Q 037625 236 REKRIVLLLDDIWERVDLTKVGVPLSGPKNTTSKVVFTTRFIGV 279 (467)
Q Consensus 236 ~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iiiTtR~~~~ 279 (467)
...+=++++|++.+.+......... ..|..++.|+...+.
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~a----~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTAA----ETGHLVMSTLHTNSA 111 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHHH----HcCCEEEEEecCCcH
Confidence 7778899999998766555433222 234557777776554
No 199
>PRK06762 hypothetical protein; Provisional
Probab=97.31 E-value=0.0044 Score=53.09 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=22.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+|.|+|++|+||||+|+.+.+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999876
No 200
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.30 E-value=0.0022 Score=54.53 Aligned_cols=124 Identities=20% Similarity=0.208 Sum_probs=70.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEe---CC----------------------------------
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVV---SK---------------------------------- 197 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~---~~---------------------------------- 197 (467)
...++.|+|++|.|||||.+.+|.... .-...+|+.- ++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~----pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~ 102 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEER----PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL 102 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhc----CCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhh
Confidence 345899999999999999999998762 1122333320 00
Q ss_pred -----CCCHHHHHHHHHHHh---cCCCCC----CCCcCHHHHHHHHHHHhcCCcEEEEeCCCC----ChhhhhhhccCCC
Q 037625 198 -----DLRLEKIQEDIGKKI---GLVGDS----WKSRSVEEKALDIFRSLREKRIVLLLDDIW----ERVDLTKVGVPLS 261 (467)
Q Consensus 198 -----~~~~~~~~~~i~~~l---~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~----~~~~~~~~~~~l~ 261 (467)
.....++-+.....+ ++.... ..-...++.--.+.+.+-+++-+|+-|+-. ....|+-+ ..|.
T Consensus 103 pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im-~lfe 181 (223)
T COG2884 103 PLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM-RLFE 181 (223)
T ss_pred hhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHH-HHHH
Confidence 011223333332222 221110 011223334445666677888999999753 23334332 2222
Q ss_pred CCCCCCceEEEecCChhhhhhc
Q 037625 262 GPKNTTSKVVFTTRFIGVCGSM 283 (467)
Q Consensus 262 ~~~~~~s~iiiTtR~~~~~~~~ 283 (467)
..+..|+.|+++|.+..+...+
T Consensus 182 einr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 182 EINRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HHhhcCcEEEEEeccHHHHHhc
Confidence 4467799999999999886654
No 201
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.30 E-value=0.0016 Score=58.62 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=32.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCC
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL 199 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~ 199 (467)
...++.|+|++|+||||++.+++... ...-..++|++....+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~e~~~ 59 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET---AGQGKKVAYIDTEGLS 59 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCCCC
Confidence 45689999999999999999998876 2334567788765444
No 202
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.27 E-value=0.0024 Score=57.51 Aligned_cols=210 Identities=11% Similarity=0.114 Sum_probs=115.7
Q ss_pred ccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccC---CCCCCCeEEEEEeCCC--------------
Q 037625 136 TVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLE---SPTNFDCVIWVVVSKD-------------- 198 (467)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~~~~-------------- 198 (467)
.+.++++....+.+....++.+...++||+|.||-|.+..+.+.+-- .+-.-+..-|.+-++.
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEE
Confidence 46777788888888877777899999999999999988877776511 0111233344433322
Q ss_pred -------CCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcE-EEEeCCCCCh--hhhhhhccCCCCCCCCCc
Q 037625 199 -------LRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLREKRI-VLLLDDIWER--VDLTKVGVPLSGPKNTTS 268 (467)
Q Consensus 199 -------~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~--~~~~~~~~~l~~~~~~~s 268 (467)
..-.-+.++++++++-..+ + +.-..+.| ++|+-.+++. +....++... -.-...+
T Consensus 94 itPSDaG~~DRvViQellKevAQt~q-------------i-e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTM-EkYs~~~ 158 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQ-------------I-ETQGQRPFKVVVINEADELTRDAQHALRRTM-EKYSSNC 158 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcc-------------h-hhccccceEEEEEechHhhhHHHHHHHHHHH-HHHhcCc
Confidence 0111223333333221100 0 00012233 5666666532 2222221111 0113456
Q ss_pred eEEEecCCh--hhhhhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHHHHhccC
Q 037625 269 KVVFTTRFI--GVCGSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIGRAMAYR 346 (467)
Q Consensus 269 ~iiiTtR~~--~~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~ 346 (467)
|+|+...+- -+....+..-.++++..+++|....+.+.+...+...+ .+++.+|+++++|+---.-.+...++-+
T Consensus 159 RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~ 235 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRVN 235 (351)
T ss_pred eEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 776633221 11122222346789999999999999998877664444 5889999999999754333333332221
Q ss_pred ----------CCHHHHHHHHHHHHhhh
Q 037625 347 ----------KKAEQWRRAIEELRRSA 363 (467)
Q Consensus 347 ----------~~~~~~~~~l~~l~~~~ 363 (467)
-...+|+-++.++....
T Consensus 236 n~~~~a~~~~i~~~dWe~~i~e~a~~i 262 (351)
T KOG2035|consen 236 NEPFTANSQVIPKPDWEIYIQEIARVI 262 (351)
T ss_pred cccccccCCCCCCccHHHHHHHHHHHH
Confidence 12457998888776553
No 203
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.27 E-value=0.011 Score=56.76 Aligned_cols=44 Identities=14% Similarity=0.213 Sum_probs=33.9
Q ss_pred cccchHHHHHHHHHHhc--CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 137 VVGLQSQLEQVWRCLAE--ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 137 ~vGr~~~~~~l~~~L~~--~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
++|....++++.+.+.. .....|.|+|+.|+||+++|+.+.+.-
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 46777777777776653 234568999999999999999998765
No 204
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.26 E-value=0.00078 Score=59.25 Aligned_cols=88 Identities=18% Similarity=0.214 Sum_probs=51.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCCCCCC-CCcCHHHHHHHHHHH
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK-DLRLEKIQEDIGKKIGLVGDSW-KSRSVEEKALDIFRS 234 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~~ 234 (467)
+++.++|+.|+||||.+..++... ..+ -..+..++... .....+-++..++.++.+.... ...+.........+.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~-~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARL-KLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH-HHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHH-hhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 689999999999999888888777 222 44566676643 3345666777788887542111 122333444333333
Q ss_pred hcC-CcEEEEeCCC
Q 037625 235 LRE-KRIVLLLDDI 247 (467)
Q Consensus 235 l~~-k~~LlVlDdv 247 (467)
++. +.=++++|-.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 332 3347777765
No 205
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.25 E-value=0.0011 Score=55.60 Aligned_cols=117 Identities=24% Similarity=0.194 Sum_probs=62.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCC---CCHHHHHHHHHHHhcC--CCC--CCCCcCHHH---
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD---LRLEKIQEDIGKKIGL--VGD--SWKSRSVEE--- 226 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~--~~~--~~~~~~~~~--- 226 (467)
+.|-|++..|.||||+|...+-+. ..+--.+.++..-+. ..-...+..+ ..+.. .+. .+...+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra---~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA---LGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHH
Confidence 578899999999999998887766 233345555544333 2333333333 11100 000 001111111
Q ss_pred ----HHHHHHHHhcC-CcEEEEeCCCCC-----hhhhhhhccCCCCCCCCCceEEEecCChh
Q 037625 227 ----KALDIFRSLRE-KRIVLLLDDIWE-----RVDLTKVGVPLSGPKNTTSKVVFTTRFIG 278 (467)
Q Consensus 227 ----~~~~l~~~l~~-k~~LlVlDdv~~-----~~~~~~~~~~l~~~~~~~s~iiiTtR~~~ 278 (467)
.....++.+.. +-=|||||++-. ....+.+...+ .....+..+|+|.|+.+
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll-~~rp~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLL-KAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHH-HcCCCCCEEEEECCCCC
Confidence 22223333433 445999999842 22334444444 44566789999999754
No 206
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.23 E-value=0.0022 Score=58.51 Aligned_cols=93 Identities=15% Similarity=0.229 Sum_probs=54.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCC---CCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC-------CCCcCH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESP---TNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDS-------WKSRSV 224 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 224 (467)
...++.|+|++|+|||+|+.+++....... +....++|++....++...+. +++...+..... ....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCCH
Confidence 356899999999999999999875541111 123678999887766654443 333333321110 011122
Q ss_pred H---HHHHHHHHHhc-C-CcEEEEeCCCC
Q 037625 225 E---EKALDIFRSLR-E-KRIVLLLDDIW 248 (467)
Q Consensus 225 ~---~~~~~l~~~l~-~-k~~LlVlDdv~ 248 (467)
. .....+.+.+. . +.-|||+|.+.
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 2 23344444443 3 56799999984
No 207
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.23 E-value=0.0018 Score=68.51 Aligned_cols=46 Identities=22% Similarity=0.350 Sum_probs=37.8
Q ss_pred CccccchHHHHHHHHHHhc---------CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 135 RTVVGLQSQLEQVWRCLAE---------ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~---------~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++|.+..++.|...+.. .....+.++|++|+|||++|+.++...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999998888762 123568999999999999999998876
No 208
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0071 Score=55.06 Aligned_cols=90 Identities=23% Similarity=0.322 Sum_probs=59.5
Q ss_pred CccccchHHHHHHHHHHhc---------C---CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHH
Q 037625 135 RTVVGLQSQLEQVWRCLAE---------E---SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 202 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~---------~---~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 202 (467)
.++.|.+..++.|.+.+.- + ..+-|.++||+|.|||.||++|+... ...| .++|.+.
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nSTF-----FSvSSSD--- 201 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NSTF-----FSVSSSD--- 201 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CCce-----EEeehHH---
Confidence 4567888888888876531 1 35679999999999999999999876 2222 3444332
Q ss_pred HHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh-cCCcEEEEeCCCC
Q 037625 203 KIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL-REKRIVLLLDDIW 248 (467)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~ 248 (467)
+.... ++ ..+.++..|++.- ++++.+|.+|+++
T Consensus 202 -LvSKW---mG---------ESEkLVknLFemARe~kPSIIFiDEiD 235 (439)
T KOG0739|consen 202 -LVSKW---MG---------ESEKLVKNLFEMARENKPSIIFIDEID 235 (439)
T ss_pred -HHHHH---hc---------cHHHHHHHHHHHHHhcCCcEEEeehhh
Confidence 22211 11 1244555566554 4688999999996
No 209
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.18 E-value=0.0022 Score=55.29 Aligned_cols=125 Identities=18% Similarity=0.175 Sum_probs=63.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCC--CCC---CC--eEEEEEeCCCCCHHHHHHHHHHHhcCCCC----CCCCcC
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLES--PTN---FD--CVIWVVVSKDLRLEKIQEDIGKKIGLVGD----SWKSRS 223 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~--~~~---f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~ 223 (467)
...+++|.|+.|+|||||.+.+..+.-.+ ... +. .+.|+ .+ .+.+..+++... .....+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 34689999999999999999886321000 011 10 12232 11 345566654321 111122
Q ss_pred H-HHHHHHHHHHhcCC--cEEEEeCCCCC---hhhhhhhccCCCCCCCCCceEEEecCChhhhhhcCCCccccc
Q 037625 224 V-EEKALDIFRSLREK--RIVLLLDDIWE---RVDLTKVGVPLSGPKNTTSKVVFTTRFIGVCGSMEADRKFLV 291 (467)
Q Consensus 224 ~-~~~~~~l~~~l~~k--~~LlVlDdv~~---~~~~~~~~~~l~~~~~~~s~iiiTtR~~~~~~~~~~~~~~~l 291 (467)
. +...-.+...+-.+ +-++++|+.-. ....+.+...+......|..||++|.+...... .+..+.+
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 2 22222344445556 77888999743 222232222221112246778888888766532 3444443
No 210
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.17 E-value=0.0018 Score=59.44 Aligned_cols=74 Identities=26% Similarity=0.339 Sum_probs=47.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRS 234 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 234 (467)
+..-+.++|++|+|||.||.++.+... ...-.+.++ +..++..++...... ......+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~---~~g~sv~f~------~~~el~~~Lk~~~~~----------~~~~~~l~~~ 164 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL---KAGISVLFI------TAPDLLSKLKAAFDE----------GRLEEKLLRE 164 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH---HcCCeEEEE------EHHHHHHHHHHHHhc----------CchHHHHHHH
Confidence 566799999999999999999999982 333345555 445666666655432 1111222232
Q ss_pred hcCCcEEEEeCCCC
Q 037625 235 LREKRIVLLLDDIW 248 (467)
Q Consensus 235 l~~k~~LlVlDdv~ 248 (467)
+. +-=||||||+-
T Consensus 165 l~-~~dlLIiDDlG 177 (254)
T COG1484 165 LK-KVDLLIIDDIG 177 (254)
T ss_pred hh-cCCEEEEeccc
Confidence 22 23489999984
No 211
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.16 E-value=0.0011 Score=62.52 Aligned_cols=86 Identities=20% Similarity=0.195 Sum_probs=55.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC---CCCcCHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDS---WKSRSVEEKALDI 231 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 231 (467)
..+++-|+|++|+||||||.+++... ...-..++|++....++.. .+..++...+. ..+.+.++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~---~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45689999999999999999887766 2334567788776655542 34444432111 1233455555555
Q ss_pred HHHhc-CCcEEEEeCCCC
Q 037625 232 FRSLR-EKRIVLLLDDIW 248 (467)
Q Consensus 232 ~~~l~-~k~~LlVlDdv~ 248 (467)
...++ +..-+||+|.+-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55553 456799999974
No 212
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.016 Score=58.97 Aligned_cols=172 Identities=19% Similarity=0.191 Sum_probs=91.8
Q ss_pred ccccchHHHHHHHHHHhcC-------------CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHH
Q 037625 136 TVVGLQSQLEQVWRCLAEE-------------SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 202 (467)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~-------------~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 202 (467)
++-|..+.++.|.+.+.-+ ...-|.++|++|+|||-||.+++... . .-++++..+
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~---~-----~~fisvKGP---- 735 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS---N-----LRFISVKGP---- 735 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC---C-----eeEEEecCH----
Confidence 3455666666666655421 12348999999999999999998876 2 223555433
Q ss_pred HHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh-cCCcEEEEeCCCCCh-------------hhhhhhccCCCC-CCCCC
Q 037625 203 KIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL-REKRIVLLLDDIWER-------------VDLTKVGVPLSG-PKNTT 267 (467)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-------------~~~~~~~~~l~~-~~~~~ 267 (467)
+++... +| .+ ++-++.++..- .-++|+|.||++++. ...+++...+.. .+-.|
T Consensus 736 ElL~Ky---IG--------aS-Eq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~G 803 (952)
T KOG0735|consen 736 ELLSKY---IG--------AS-EQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDG 803 (952)
T ss_pred HHHHHH---hc--------cc-HHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccce
Confidence 222222 22 12 23333444433 458999999998641 123333322211 22345
Q ss_pred ceEEE-ecCChhhhh-hcCC---CcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHH
Q 037625 268 SKVVF-TTRFIGVCG-SMEA---DRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLA 335 (467)
Q Consensus 268 s~iii-TtR~~~~~~-~~~~---~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pla 335 (467)
.-|+- |||.+-+-. .+.. ++.+.-+.-++.|-.++|............. ..+.++.+++|..-|
T Consensus 804 V~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~v----dl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 804 VYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDV----DLECLAQKTDGFTGA 872 (952)
T ss_pred EEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCcccc----chHHHhhhcCCCchh
Confidence 55554 667543311 1122 2233344456677777777665433322222 245677778887654
No 213
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0036 Score=55.47 Aligned_cols=161 Identities=19% Similarity=0.253 Sum_probs=85.2
Q ss_pred cccchHHHHHHHHHHhc-------------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHH
Q 037625 137 VVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEK 203 (467)
Q Consensus 137 ~vGr~~~~~~l~~~L~~-------------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 203 (467)
+-|.+-.++++.+...- +..+-|.++|++|+|||-||+.++++- ...|-.+. .+ +
T Consensus 157 iggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t---~a~firvv-----gs----e 224 (408)
T KOG0727|consen 157 IGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVV-----GS----E 224 (408)
T ss_pred cccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc---chheeeec-----cH----H
Confidence 44667677776665431 356678999999999999999999986 44442222 11 1
Q ss_pred HHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh-cCCcEEEEeCCCCCh------------hhhh----hh-ccCCCCCCC
Q 037625 204 IQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL-REKRIVLLLDDIWER------------VDLT----KV-GVPLSGPKN 265 (467)
Q Consensus 204 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~------------~~~~----~~-~~~l~~~~~ 265 (467)
+.+. -++-. ......+++.- .+-+.+|.+|+++.. .+.. ++ .+.-.-...
T Consensus 225 fvqk---ylgeg---------prmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~ 292 (408)
T KOG0727|consen 225 FVQK---YLGEG---------PRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT 292 (408)
T ss_pred HHHH---HhccC---------cHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc
Confidence 1111 12210 12233333333 356788999988531 1111 11 111101455
Q ss_pred CCceEEEecC-Chhh----hhhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHH
Q 037625 266 TTSKVVFTTR-FIGV----CGSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAEL 321 (467)
Q Consensus 266 ~~s~iiiTtR-~~~~----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~ 321 (467)
.+.++|+.|. ...+ .+--..+..++.+.-+..+-.-.|...........+.+++++
T Consensus 293 ~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~ 353 (408)
T KOG0727|consen 293 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDL 353 (408)
T ss_pred cceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHH
Confidence 6788998665 3222 111123456666644555556666665554444444444443
No 214
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0044 Score=63.24 Aligned_cols=134 Identities=17% Similarity=0.150 Sum_probs=76.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRS 234 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 234 (467)
..+.+.++|++|+|||.||+++++.. ...|-.+.. . +++.. +...+.......+...
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~-----~----~l~sk-----------~vGesek~ir~~F~~A 331 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKG-----S----ELLSK-----------WVGESEKNIRELFEKA 331 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeC-----H----HHhcc-----------ccchHHHHHHHHHHHH
Confidence 34579999999999999999999966 444432221 1 11110 0112222222333333
Q ss_pred hcCCcEEEEeCCCCCh-------------hhhhhhccCCC-CCCCCCceEEEecCChhhhh---hc--CCCcccccCCCC
Q 037625 235 LREKRIVLLLDDIWER-------------VDLTKVGVPLS-GPKNTTSKVVFTTRFIGVCG---SM--EADRKFLVACLS 295 (467)
Q Consensus 235 l~~k~~LlVlDdv~~~-------------~~~~~~~~~l~-~~~~~~s~iiiTtR~~~~~~---~~--~~~~~~~l~~L~ 295 (467)
.+..++.|.+|+++.. ....++...+. .....+..||-||..+.... .. ..+..+.+++-+
T Consensus 332 ~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd 411 (494)
T COG0464 332 RKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPD 411 (494)
T ss_pred HcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCC
Confidence 4578999999999531 11222222221 12223344455554333311 11 335678899999
Q ss_pred HHHHHHHHHHHhCCCC
Q 037625 296 EKDAWELFREKVGEET 311 (467)
Q Consensus 296 ~~e~~~lf~~~~~~~~ 311 (467)
.++..+.|+.+.....
T Consensus 412 ~~~r~~i~~~~~~~~~ 427 (494)
T COG0464 412 LEERLEIFKIHLRDKK 427 (494)
T ss_pred HHHHHHHHHHHhcccC
Confidence 9999999999887443
No 215
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.13 E-value=0.0009 Score=57.20 Aligned_cols=116 Identities=17% Similarity=0.201 Sum_probs=60.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCC--CCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD--LRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIF 232 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 232 (467)
...+++|.|+.|+|||||.+.++... ......+++.-... .+..+. ....++... .-...+...-.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~---qLS~G~~qrl~la 94 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDA---RRAGIAMVY---QLSVGERQMVEIA 94 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHH---HhcCeEEEE---ecCHHHHHHHHHH
Confidence 34589999999999999999998765 22334444422111 111111 111122111 1112223333345
Q ss_pred HHhcCCcEEEEeCCCCC---hhhhhhhccCCCCCCCCCceEEEecCChhhh
Q 037625 233 RSLREKRIVLLLDDIWE---RVDLTKVGVPLSGPKNTTSKVVFTTRFIGVC 280 (467)
Q Consensus 233 ~~l~~k~~LlVlDdv~~---~~~~~~~~~~l~~~~~~~s~iiiTtR~~~~~ 280 (467)
..+-.++-++++|+... ......+...+......+..||++|.+....
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 55666788999999753 2222333222211123466788888887643
No 216
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.12 E-value=0.0027 Score=56.39 Aligned_cols=59 Identities=15% Similarity=0.149 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcCCcEEEEeCCCC---ChhhhhhhccCCCC-CCCCCceEEEecCChhhhhhc
Q 037625 225 EEKALDIFRSLREKRIVLLLDDIW---ERVDLTKVGVPLSG-PKNTTSKVVFTTRFIGVCGSM 283 (467)
Q Consensus 225 ~~~~~~l~~~l~~k~~LlVlDdv~---~~~~~~~~~~~l~~-~~~~~s~iiiTtR~~~~~~~~ 283 (467)
++..-.+.+.|-.++-+|+.|+-- |...-+.+...+.. ....|..||+.|.++.++...
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC
Confidence 334445666777788899999853 22222222222211 234578999999999998753
No 217
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.12 E-value=0.0018 Score=55.97 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|+|||||.+.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34589999999999999999998765
No 218
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.12 E-value=0.0013 Score=66.87 Aligned_cols=72 Identities=25% Similarity=0.303 Sum_probs=54.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRS 234 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 234 (467)
..+++.++|++|.||||||.-++++. + ..++=++.|+..+...+-..|...+.... .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa---G---YsVvEINASDeRt~~~v~~kI~~avq~~s-----------------~ 381 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA---G---YSVVEINASDERTAPMVKEKIENAVQNHS-----------------V 381 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc---C---ceEEEecccccccHHHHHHHHHHHHhhcc-----------------c
Confidence 46799999999999999999999875 1 25677888888888887777766654321 1
Q ss_pred h--cCCcEEEEeCCCCC
Q 037625 235 L--REKRIVLLLDDIWE 249 (467)
Q Consensus 235 l--~~k~~LlVlDdv~~ 249 (467)
+ .+++.-||+|+++-
T Consensus 382 l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDG 398 (877)
T ss_pred cccCCCcceEEEecccC
Confidence 2 15788899999974
No 219
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.11 E-value=0.0041 Score=57.49 Aligned_cols=123 Identities=15% Similarity=0.051 Sum_probs=67.5
Q ss_pred HHHHHHHh-cCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEE---eCCCCCHHHHHHHHHHHhcC-CCCC-
Q 037625 145 EQVWRCLA-EESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVV---VSKDLRLEKIQEDIGKKIGL-VGDS- 218 (467)
Q Consensus 145 ~~l~~~L~-~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~---~~~~~~~~~~~~~i~~~l~~-~~~~- 218 (467)
+.++..+. +++...++|.|+.|+|||||.+.++.... .....+++. +...... .++...... +...
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g~~v~~~d~~----~ei~~~~~~~~q~~~ 170 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRGKKVGIVDER----SEIAGCVNGVPQHDV 170 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECCEEeecchhH----HHHHHHhcccccccc
Confidence 33344443 34456899999999999999999998872 222333332 1111112 233322221 1110
Q ss_pred ---CCCcCHHHHHHHHHHHhc-CCcEEEEeCCCCChhhhhhhccCCCCCCCCCceEEEecCChhh
Q 037625 219 ---WKSRSVEEKALDIFRSLR-EKRIVLLLDDIWERVDLTKVGVPLSGPKNTTSKVVFTTRFIGV 279 (467)
Q Consensus 219 ---~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iiiTtR~~~~ 279 (467)
.+..+.......+...+. ..+-++++|++.....+..+...+ ..|..+|+||.+..+
T Consensus 171 ~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~----~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 171 GIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL----HAGVSIIATAHGRDV 231 (270)
T ss_pred cccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH----hCCCEEEEEechhHH
Confidence 011111111222333333 578899999997766666554444 247789999997655
No 220
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.10 E-value=0.0012 Score=62.31 Aligned_cols=86 Identities=22% Similarity=0.193 Sum_probs=55.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC---CCCcCHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDS---WKSRSVEEKALDI 231 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 231 (467)
..+++-|+|++|+||||||.+++... ......++|++....++.. .+..++...+. ..+.+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 45689999999999999999988766 2334567888877665542 33444432111 1233455555555
Q ss_pred HHHhc-CCcEEEEeCCCC
Q 037625 232 FRSLR-EKRIVLLLDDIW 248 (467)
Q Consensus 232 ~~~l~-~k~~LlVlDdv~ 248 (467)
...++ +..-+||+|.+-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 55543 456799999973
No 221
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.08 E-value=0.0014 Score=56.56 Aligned_cols=26 Identities=31% Similarity=0.593 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|+|||||++.++...
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 45689999999999999999998765
No 222
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.08 E-value=0.019 Score=54.48 Aligned_cols=49 Identities=22% Similarity=0.174 Sum_probs=35.2
Q ss_pred ccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHH
Q 037625 288 KFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLAL 336 (467)
Q Consensus 288 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 336 (467)
++++.+++.+|+..++.-.............+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 6789999999999999987765443322233455667777779999753
No 223
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0089 Score=60.66 Aligned_cols=173 Identities=18% Similarity=0.188 Sum_probs=89.5
Q ss_pred CccccchHHHHH---HHHHHhcCC---------CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHH
Q 037625 135 RTVVGLQSQLEQ---VWRCLAEES---------AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 202 (467)
Q Consensus 135 ~~~vGr~~~~~~---l~~~L~~~~---------~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 202 (467)
.+..|.++.+++ +++.|.++. .+-+.++||+|+|||.||++++... .+ .| .+.|.+ ++-
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-~V--PF-----f~iSGS-~FV 220 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-GV--PF-----FSISGS-DFV 220 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc-CC--Cc-----eeccch-hhh
Confidence 456888776655 455565431 3458899999999999999999886 22 22 112211 111
Q ss_pred HHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh----------------hhhhhhccCCCCCCC-
Q 037625 203 KIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER----------------VDLTKVGVPLSGPKN- 265 (467)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~~~~~l~~~~~- 265 (467)
++ . ........-+...+..++-++++++|.++.. ..+.++..-.-....
T Consensus 221 em-------f-------VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 221 EM-------F-------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred hh-------h-------cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 11 0 1112222333444555667899999998531 123333222201111
Q ss_pred CCceEEE-ecCChhh----hhhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcH
Q 037625 266 TTSKVVF-TTRFIGV----CGSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPL 334 (467)
Q Consensus 266 ~~s~iii-TtR~~~~----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl 334 (467)
.|..|+. |.|..-+ .+.-..++.+.++..+-..-.+.++-++........-++.. |++.+-|.-.
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~----iAr~tpGfsG 356 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKK----IARGTPGFSG 356 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHH----HhhhCCCccc
Confidence 2333333 4443222 22223445666666666666677775555444333333333 6666666543
No 224
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.07 E-value=0.003 Score=57.61 Aligned_cols=88 Identities=14% Similarity=0.155 Sum_probs=53.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC----------------
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDS---------------- 218 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------------- 218 (467)
...++.|.|++|+|||+|+.++.... -.....++|++... +..++.+.+. +++.....
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~---~~~ge~~lyvs~ee--~~~~i~~~~~-~~g~~~~~~~~~g~l~~~d~~~~~ 93 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGIYVALEE--HPVQVRRNMA-QFGWDVRKYEEEGKFAIVDAFTGG 93 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEEeeC--CHHHHHHHHH-HhCCCHHHHhhcCCEEEEeccccc
Confidence 45689999999999999999876654 13356788887654 4445544432 22221000
Q ss_pred ------------CCCcCHHHHHHHHHHHhcC-CcEEEEeCCCC
Q 037625 219 ------------WKSRSVEEKALDIFRSLRE-KRIVLLLDDIW 248 (467)
Q Consensus 219 ------------~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 248 (467)
....+..+....+.+.++. +.-++|+|.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls 136 (237)
T TIGR03877 94 IGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVT 136 (237)
T ss_pred cccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChh
Confidence 0123455666666666543 44579999874
No 225
>PRK06696 uridine kinase; Validated
Probab=97.07 E-value=0.00077 Score=60.88 Aligned_cols=42 Identities=12% Similarity=0.230 Sum_probs=34.6
Q ss_pred cchHHHHHHHHHHhc---CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 139 GLQSQLEQVWRCLAE---ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 139 Gr~~~~~~l~~~L~~---~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.|.+.+++|.+.+.. +...+|+|.|.+|+||||||+.+...+
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 356667777777753 456799999999999999999999887
No 226
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.06 E-value=0.0017 Score=56.14 Aligned_cols=120 Identities=20% Similarity=0.245 Sum_probs=60.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC---CCC--------cC
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDS---WKS--------RS 223 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~--------~~ 223 (467)
...+++|.|+.|.|||||++.++... ......+++.-....... ..+...++..... ... .+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS 97 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL----KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLS 97 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcC
Confidence 34589999999999999999998865 122333433211110000 1111122211100 001 11
Q ss_pred -HHHHHHHHHHHhcCCcEEEEeCCCCC---hhhhhhhccCCCCCCCCCceEEEecCChhhhh
Q 037625 224 -VEEKALDIFRSLREKRIVLLLDDIWE---RVDLTKVGVPLSGPKNTTSKVVFTTRFIGVCG 281 (467)
Q Consensus 224 -~~~~~~~l~~~l~~k~~LlVlDdv~~---~~~~~~~~~~l~~~~~~~s~iiiTtR~~~~~~ 281 (467)
.+...-.+...+..++-++++|+... ......+...+......|..+|++|.+.....
T Consensus 98 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 98 GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 11222235555667888999999753 22222222222111223677888888876543
No 227
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.06 E-value=0.038 Score=52.13 Aligned_cols=63 Identities=13% Similarity=0.172 Sum_probs=42.8
Q ss_pred CCccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHH
Q 037625 134 ERTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKI 204 (467)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 204 (467)
.+.|+=..+....+..++..+ +.|.|.|++|+||||+|+.++... ... .+.++++...+..++
T Consensus 44 d~~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l---~~~---~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 44 DPAYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARL---NWP---CVRVNLDSHVSRIDL 106 (327)
T ss_pred CCCccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHH---CCC---eEEEEecCCCChhhc
Confidence 345555556667777777543 469999999999999999999987 322 234555555444443
No 228
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0025 Score=66.34 Aligned_cols=154 Identities=18% Similarity=0.206 Sum_probs=88.1
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCC-----eEEEEEeCCCCCHHHHHHHHH
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFD-----CVIWVVVSKDLRLEKIQEDIG 209 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-----~~~wv~~~~~~~~~~~~~~i~ 209 (467)
+.++||+++++++++.|......--.++|.+|+|||+++.-++.++ ..++-.. .++-++ +.. +
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rI-v~g~VP~~L~~~~i~sLD------~g~----L- 237 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRI-VNGDVPESLKDKRIYSLD------LGS----L- 237 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHH-hcCCCCHHHcCCEEEEec------HHH----H-
Confidence 4579999999999999975433334688999999999999998887 2222111 111111 100 0
Q ss_pred HHhcCCCCCCCCcCHHHHHHHHHHHhc-CCcEEEEeCCCCCh-------hh-hhhhccCCCCCCCC-CceEEE-ecCChh
Q 037625 210 KKIGLVGDSWKSRSVEEKALDIFRSLR-EKRIVLLLDDIWER-------VD-LTKVGVPLSGPKNT-TSKVVF-TTRFIG 278 (467)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~-------~~-~~~~~~~l~~~~~~-~s~iii-TtR~~~ 278 (467)
. .+.. ...+.++....+.+.++ .++++|++|.+... .. .+ ....+.|.... .-++|- ||-++.
T Consensus 238 --v--AGak-yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~D-AaNiLKPaLARGeL~~IGATT~~EY 311 (786)
T COG0542 238 --V--AGAK-YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMD-AANLLKPALARGELRCIGATTLDEY 311 (786)
T ss_pred --h--cccc-ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccc-hhhhhHHHHhcCCeEEEEeccHHHH
Confidence 0 0111 23455666666666654 45899999998531 01 11 11111111222 345554 444332
Q ss_pred h------hhhcCCCcccccCCCCHHHHHHHHHHH
Q 037625 279 V------CGSMEADRKFLVACLSEKDAWELFREK 306 (467)
Q Consensus 279 ~------~~~~~~~~~~~l~~L~~~e~~~lf~~~ 306 (467)
- +..-.....+.++..+.+++..+++-.
T Consensus 312 Rk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 312 RKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 1 111123457789999999999988754
No 229
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.05 E-value=0.0028 Score=55.01 Aligned_cols=119 Identities=17% Similarity=0.179 Sum_probs=59.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC------------CCCc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDS------------WKSR 222 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------------~~~~ 222 (467)
...+++|.|+.|+|||||++.++.... .-...+++.-. +.......+...++..... ....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~L 99 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK----PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRF 99 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC----CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccC
Confidence 345899999999999999999988751 11222332211 1111111122222211110 0111
Q ss_pred C-HHHHHHHHHHHhcCCcEEEEeCCCCCh---hhhhhhccCCCCCCCCCceEEEecCChhhhh
Q 037625 223 S-VEEKALDIFRSLREKRIVLLLDDIWER---VDLTKVGVPLSGPKNTTSKVVFTTRFIGVCG 281 (467)
Q Consensus 223 ~-~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~~~~~l~~~~~~~s~iiiTtR~~~~~~ 281 (467)
+ .+...-.+...+-.++-++++|+.... ...+.+...+... ..+..||++|.+.....
T Consensus 100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV-LKDKTLIWITHHLTGIE 161 (178)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHH
Confidence 1 122222344555667889999997532 2222222222111 13577888888776654
No 230
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.05 E-value=0.0025 Score=58.73 Aligned_cols=92 Identities=22% Similarity=0.301 Sum_probs=55.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhccc---CCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC-------CCCcCH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFL---ESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDS-------WKSRSV 224 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~---~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 224 (467)
...+.=|+|++|+|||.|+.+++-... ...+.-..++|++-...+....+. +|++..+...+. ....+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 346889999999999999988765431 112344579999988888877765 455554321100 011233
Q ss_pred HHHHH---HHHHHh-cCCcEEEEeCCC
Q 037625 225 EEKAL---DIFRSL-REKRIVLLLDDI 247 (467)
Q Consensus 225 ~~~~~---~l~~~l-~~k~~LlVlDdv 247 (467)
+++.. .+...+ .++--|||+|.+
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHhhccccceEEEEecch
Confidence 33333 333333 345569999987
No 231
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.05 E-value=0.0027 Score=61.59 Aligned_cols=85 Identities=21% Similarity=0.320 Sum_probs=50.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCC---CCcCHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSW---KSRSVEEKALDI 231 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 231 (467)
...++.|.|++|+|||||+.+++.... .....++|++.... ..++. .-+..++...+.. ...+.+.+...+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 346899999999999999999988762 23346778776433 33332 2234555432221 112233333322
Q ss_pred HHHhcCCcEEEEeCCCC
Q 037625 232 FRSLREKRIVLLLDDIW 248 (467)
Q Consensus 232 ~~~l~~k~~LlVlDdv~ 248 (467)
. ..+.-+||+|.+.
T Consensus 155 ~---~~~~~lVVIDSIq 168 (372)
T cd01121 155 E---ELKPDLVIIDSIQ 168 (372)
T ss_pred H---hcCCcEEEEcchH
Confidence 1 3467799999984
No 232
>PRK09354 recA recombinase A; Provisional
Probab=97.04 E-value=0.0015 Score=62.14 Aligned_cols=86 Identities=20% Similarity=0.186 Sum_probs=56.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC---CCCcCHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDS---WKSRSVEEKALDI 231 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 231 (467)
..+++-|+|++|+|||||+.+++... ...-..++|++....++.. .+..++...+. ..+.+.++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45689999999999999999988766 2334678899887766642 34444432111 1233455555555
Q ss_pred HHHhc-CCcEEEEeCCCC
Q 037625 232 FRSLR-EKRIVLLLDDIW 248 (467)
Q Consensus 232 ~~~l~-~k~~LlVlDdv~ 248 (467)
...++ +..-+||+|.+-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55553 456799999974
No 233
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.03 E-value=0.0038 Score=53.11 Aligned_cols=117 Identities=20% Similarity=0.151 Sum_probs=63.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCC---CCCHHHHHHHHHHHhcC--CCCC--CCCcC-----
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK---DLRLEKIQEDIGKKIGL--VGDS--WKSRS----- 223 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l~~--~~~~--~~~~~----- 223 (467)
.+.|-|++..|.||||+|..++-+. ..+--.++.+..-+ .......+..+ .+.. .+.. +...+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra---~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~ 79 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRA---LGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADT 79 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHH---HHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHH
Confidence 4688899999999999998887776 23333444343322 22333344332 1110 0110 11111
Q ss_pred --HHHHHHHHHHHhcC-CcEEEEeCCCCC-----hhhhhhhccCCCCCCCCCceEEEecCChh
Q 037625 224 --VEEKALDIFRSLRE-KRIVLLLDDIWE-----RVDLTKVGVPLSGPKNTTSKVVFTTRFIG 278 (467)
Q Consensus 224 --~~~~~~~l~~~l~~-k~~LlVlDdv~~-----~~~~~~~~~~l~~~~~~~s~iiiTtR~~~ 278 (467)
..+.....++.+.. +-=|||||++-. .-+.+.+...+ ...+.+.-+|+|.|+.+
T Consensus 80 ~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL-~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 80 AIAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEAL-QERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHH-HhCCCCCEEEEECCCCC
Confidence 11222333444444 445999999842 22333444444 45566789999999763
No 234
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.02 E-value=0.039 Score=51.85 Aligned_cols=167 Identities=13% Similarity=0.047 Sum_probs=92.5
Q ss_pred HHHHHHHHhcCC-CcEEEEEccCCCcHHHHHHHHHhcccC-------CCCCCCeEEEEEe-CCCCCHHHHHHHHHHHhcC
Q 037625 144 LEQVWRCLAEES-AGIIGLYGMGGVGKTTLLTHINNKFLE-------SPTNFDCVIWVVV-SKDLRLEKIQEDIGKKIGL 214 (467)
Q Consensus 144 ~~~l~~~L~~~~-~~~i~I~G~~GiGKTtLa~~v~~~~~~-------~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~ 214 (467)
++.+.+.+..++ .++..++|+.|.||+++|..+.+.+.- ...+.+...++.. +.....+++. ++...+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 455666666554 456779999999999999999887611 1122222222221 1222222222 22222221
Q ss_pred CCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh--hhhhhhccCCCCCCCCCceEEEec-CChhhhh-hcCCCcccc
Q 037625 215 VGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER--VDLTKVGVPLSGPKNTTSKVVFTT-RFIGVCG-SMEADRKFL 290 (467)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iiiTt-R~~~~~~-~~~~~~~~~ 290 (467)
.. .-.+++-++|+|+++.. ...+.+...+ -..+.++.+|++| ....+.. ..+....++
T Consensus 84 ~~-----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~L-EEPp~~t~~il~~~~~~kll~TI~SRc~~~~ 145 (299)
T PRK07132 84 SS-----------------FVQSQKKILIIKNIEKTSNSLLNALLKTI-EEPPKDTYFLLTTKNINKVLPTIVSRCQVFN 145 (299)
T ss_pred CC-----------------cccCCceEEEEecccccCHHHHHHHHHHh-hCCCCCeEEEEEeCChHhChHHHHhCeEEEE
Confidence 11 00146778889998643 3345555555 3344556666544 4444432 334567899
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHH
Q 037625 291 VACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALIT 338 (467)
Q Consensus 291 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~ 338 (467)
+.+++.++..+.+... +. + .+.+..++..++|.=-|+..
T Consensus 146 f~~l~~~~l~~~l~~~-~~-----~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 146 VKEPDQQKILAKLLSK-NK-----E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCCCHHHHHHHHHHc-CC-----C---hhHHHHHHHHcCCHHHHHHH
Confidence 9999999999888764 21 1 24455666667762234443
No 235
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.02 E-value=0.0016 Score=59.76 Aligned_cols=92 Identities=20% Similarity=0.344 Sum_probs=54.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCC-CeEEEEEeCC-CCCHHHHHHHHHHHhcCCC-----CCCCCcCHH--
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNF-DCVIWVVVSK-DLRLEKIQEDIGKKIGLVG-----DSWKSRSVE-- 225 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~-- 225 (467)
+-..++|.|.+|+|||||++.++++. +.+| +.++++-+.+ ...+.++...+...-.... ...+.....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 34578999999999999999999987 3233 3455555544 4456667666654321110 000111111
Q ss_pred ---HHHHHHHHHh---cCCcEEEEeCCCCC
Q 037625 226 ---EKALDIFRSL---REKRIVLLLDDIWE 249 (467)
Q Consensus 226 ---~~~~~l~~~l---~~k~~LlVlDdv~~ 249 (467)
...-.+.+++ +++.+|+++||+..
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 1112233444 38999999999853
No 236
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.02 E-value=0.0019 Score=56.94 Aligned_cols=32 Identities=31% Similarity=0.467 Sum_probs=25.4
Q ss_pred HHHhcCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 149 RCLAEESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 149 ~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+...+.++..|.|++|+||||+++.+...+
T Consensus 11 ~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 11 RAILTSGDRVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp HHHHHCTCSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred HHHHhcCCeEEEEEECCCCCHHHHHHHHHHHH
Confidence 33333445789999999999999999988777
No 237
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.02 E-value=0.0039 Score=59.08 Aligned_cols=93 Identities=19% Similarity=0.225 Sum_probs=56.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccC---CCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCC-------CCcCH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLE---SPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSW-------KSRSV 224 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~ 224 (467)
...++-|+|++|+|||+|+.+++-..+. ....-..++|++....++...+.. ++..++...+.. ...+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCH
Confidence 3468899999999999999887643311 112235789999988888887754 566665432110 11233
Q ss_pred HHHH---HHHHHHhc-CCcEEEEeCCCC
Q 037625 225 EEKA---LDIFRSLR-EKRIVLLLDDIW 248 (467)
Q Consensus 225 ~~~~---~~l~~~l~-~k~~LlVlDdv~ 248 (467)
++.. ..+...+. ++.-|||+|.+-
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 3333 33333332 355688999873
No 238
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.00 E-value=0.048 Score=57.37 Aligned_cols=25 Identities=36% Similarity=0.627 Sum_probs=22.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.++++++|+.|+||||++..++...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 4699999999999999999888765
No 239
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.99 E-value=0.0015 Score=56.62 Aligned_cols=36 Identities=25% Similarity=0.516 Sum_probs=28.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEE
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWV 193 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv 193 (467)
...+|.+.|++|+||||+|+.+++.+ ...+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 34589999999999999999999987 3344455555
No 240
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.97 E-value=0.00095 Score=66.90 Aligned_cols=45 Identities=27% Similarity=0.426 Sum_probs=40.0
Q ss_pred ccccchHHHHHHHHHHh------cCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 136 TVVGLQSQLEQVWRCLA------EESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 136 ~~vGr~~~~~~l~~~L~------~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+++|.++.+++|++.|. +...+++.++||+|+||||||+.+++-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 47999999999999983 3466799999999999999999999877
No 241
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.96 E-value=0.0035 Score=53.99 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|.|||||.+.++...
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 44689999999999999999998875
No 242
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0026 Score=56.79 Aligned_cols=44 Identities=27% Similarity=0.373 Sum_probs=34.5
Q ss_pred cccchHHHHHHHHHHhc-------------CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 137 VVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 137 ~vGr~~~~~~l~~~L~~-------------~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+-|..+++++|.+...- +..+-|.++|++|.|||-+|++++|+-
T Consensus 179 vggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 179 VGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred ccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 45677778877776542 245568899999999999999999986
No 243
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.96 E-value=0.0037 Score=56.60 Aligned_cols=48 Identities=23% Similarity=0.312 Sum_probs=32.0
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHH
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDI 208 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 208 (467)
..++.|.|++|+|||||+.+++....+ .-..++|++. ..+..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~---~g~~~~yi~~--e~~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQ---NGYSVSYVST--QLTTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh---CCCcEEEEeC--CCCHHHHHHHH
Confidence 458999999999999998776655411 1245566663 33455666555
No 244
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.96 E-value=0.004 Score=54.18 Aligned_cols=122 Identities=20% Similarity=0.239 Sum_probs=63.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeC--CCCCHHHHHHH------HHHHhcCCC---CCCCCcC
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVS--KDLRLEKIQED------IGKKIGLVG---DSWKSRS 223 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~--~~~~~~~~~~~------i~~~l~~~~---~~~~~~~ 223 (467)
+..+++|.|+.|+|||||++.++... ......+++.-. ...+....... ++..++... ......+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 34689999999999999999998865 222333333211 11122222111 344444321 0011122
Q ss_pred -HHHHHHHHHHHhcCCcEEEEeCCCCC---hhhhhhhccCCCCCCCC-CceEEEecCChhhh
Q 037625 224 -VEEKALDIFRSLREKRIVLLLDDIWE---RVDLTKVGVPLSGPKNT-TSKVVFTTRFIGVC 280 (467)
Q Consensus 224 -~~~~~~~l~~~l~~k~~LlVlDdv~~---~~~~~~~~~~l~~~~~~-~s~iiiTtR~~~~~ 280 (467)
.+...-.+...+-.++-++++|+... ......+...+...... +..||++|.+....
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 22233335555666788999999742 22233332222111122 66788888876653
No 245
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.95 E-value=0.0028 Score=54.71 Aligned_cols=88 Identities=20% Similarity=0.153 Sum_probs=46.2
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHhcCCCC-CCCCcCHHHHH-HHHHHH
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-LRLEKIQEDIGKKIGLVGD-SWKSRSVEEKA-LDIFRS 234 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~-~~l~~~ 234 (467)
++.+.|++|+||||++..++.... ..-..++.++.... ....+.+...+...+.+.. .....+..... +.+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~---~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK---KKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHA 78 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH---HCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 678999999999999999988762 22223444443322 1233334444444432211 01122333333 233333
Q ss_pred hcCCcEEEEeCCCC
Q 037625 235 LREKRIVLLLDDIW 248 (467)
Q Consensus 235 l~~k~~LlVlDdv~ 248 (467)
..+..-++|+|..-
T Consensus 79 ~~~~~d~viiDt~g 92 (173)
T cd03115 79 REENFDVVIVDTAG 92 (173)
T ss_pred HhCCCCEEEEECcc
Confidence 44444466688764
No 246
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0051 Score=52.30 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+.|.|+.|+|||||.+.++--.
T Consensus 28 Ge~~~i~G~NG~GKTtLLRilaGLl 52 (209)
T COG4133 28 GEALQITGPNGAGKTTLLRILAGLL 52 (209)
T ss_pred CCEEEEECCCCCcHHHHHHHHHccc
Confidence 3578999999999999999998876
No 247
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.95 E-value=0.0021 Score=55.88 Aligned_cols=26 Identities=38% Similarity=0.526 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|.|||||++.++...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998765
No 248
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.94 E-value=0.099 Score=55.69 Aligned_cols=46 Identities=20% Similarity=0.298 Sum_probs=36.8
Q ss_pred CccccchHHHHHHHHHHhc--CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 135 RTVVGLQSQLEQVWRCLAE--ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~--~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++|+...+..+.+.+.. .....|.|+|+.|+|||++|+.+.+..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 3579998888888766652 334578999999999999999998865
No 249
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.93 E-value=0.0034 Score=53.80 Aligned_cols=116 Identities=15% Similarity=0.129 Sum_probs=59.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCC--C---CeEEEEEeCCCCCH--HHHHHHHHHHhcCCCCCCCCcCHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTN--F---DCVIWVVVSKDLRL--EKIQEDIGKKIGLVGDSWKSRSVEEK 227 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~--f---~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~ 227 (467)
...+++|.|+.|.|||||++.++.......+. + ..+.++ .+.... ..+...+. .... ..-...+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~----~~~~-~~LS~G~~~ 98 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLI----YPWD-DVLSGGEQQ 98 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhh----ccCC-CCCCHHHHH
Confidence 34589999999999999999998875211111 1 112222 222211 12222222 1000 011222333
Q ss_pred HHHHHHHhcCCcEEEEeCCCCC---hhhhhhhccCCCCCCCCCceEEEecCChhhh
Q 037625 228 ALDIFRSLREKRIVLLLDDIWE---RVDLTKVGVPLSGPKNTTSKVVFTTRFIGVC 280 (467)
Q Consensus 228 ~~~l~~~l~~k~~LlVlDdv~~---~~~~~~~~~~l~~~~~~~s~iiiTtR~~~~~ 280 (467)
.-.+.+.+-.++-++++|+-.. ......+...+ ... +..+|++|.+....
T Consensus 99 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l-~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLL-KEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHH-HHh--CCEEEEEeCChhHH
Confidence 3344555566778889998742 22223332222 111 35688888776654
No 250
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.92 E-value=0.0051 Score=54.22 Aligned_cols=82 Identities=17% Similarity=0.106 Sum_probs=44.6
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCCCCCC---eEEEEEeCCCCCHHHHHHHHHHHh--cCCCCCCCCcCHHHHHHHHH
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKFLESPTNFD---CVIWVVVSKDLRLEKIQEDIGKKI--GLVGDSWKSRSVEEKALDIF 232 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~~~~~~l~ 232 (467)
+|+|.|++|+||||+|+.+...+.. .... ....++.............- ... ..........+.+.+...+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~--~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK--RGIPAMEMDIILSLDDFYDDYHLRDRK-GRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT--CTTTCCCSEEEEEGGGGBHHHHHHHHH-HHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc--cCcCccceeEEEeecccccccchhhHh-hccccccCCCCccccCHHHHHHHHH
Confidence 6899999999999999999998821 1222 23333333222222222111 111 11112224566777777777
Q ss_pred HHhcCCcEEE
Q 037625 233 RSLREKRIVL 242 (467)
Q Consensus 233 ~~l~~k~~Ll 242 (467)
...+++.+-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 6666655433
No 251
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.91 E-value=0.0036 Score=57.90 Aligned_cols=105 Identities=21% Similarity=0.222 Sum_probs=58.4
Q ss_pred ccchHHH-HHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC
Q 037625 138 VGLQSQL-EQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVG 216 (467)
Q Consensus 138 vGr~~~~-~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 216 (467)
.|...+. +.+..++ .....++.|.|+.|+||||++..+.+.. ...-..++.+.-+....... ..++...
T Consensus 62 lg~~~~~~~~l~~~~-~~~~GlilisG~tGSGKTT~l~all~~i---~~~~~~iitiEdp~E~~~~~-----~~q~~v~- 131 (264)
T cd01129 62 LGLKPENLEIFRKLL-EKPHGIILVTGPTGSGKTTTLYSALSEL---NTPEKNIITVEDPVEYQIPG-----INQVQVN- 131 (264)
T ss_pred cCCCHHHHHHHHHHH-hcCCCEEEEECCCCCcHHHHHHHHHhhh---CCCCCeEEEECCCceecCCC-----ceEEEeC-
Confidence 3444433 4444444 4445789999999999999999887766 22112233332221111110 0111110
Q ss_pred CCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCChhhhhhh
Q 037625 217 DSWKSRSVEEKALDIFRSLREKRIVLLLDDIWERVDLTKV 256 (467)
Q Consensus 217 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~ 256 (467)
..........+...++..+=.|+++++.+.+....+
T Consensus 132 ----~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~ 167 (264)
T cd01129 132 ----EKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIA 167 (264)
T ss_pred ----CcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHH
Confidence 111123445666777888899999999887665543
No 252
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.0055 Score=58.50 Aligned_cols=97 Identities=26% Similarity=0.368 Sum_probs=59.2
Q ss_pred HHHHHHHHhcC--CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCC
Q 037625 144 LEQVWRCLAEE--SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKS 221 (467)
Q Consensus 144 ~~~l~~~L~~~--~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 221 (467)
..++-+.|-.+ ...+|.|-|.+|+|||||.-+++.++. ..- .++||+-.++ ..++ +--+..++.+.+.. .
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA---~~~-~vLYVsGEES--~~Qi-klRA~RL~~~~~~l-~ 150 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA---KRG-KVLYVSGEES--LQQI-KLRADRLGLPTNNL-Y 150 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHH---hcC-cEEEEeCCcC--HHHH-HHHHHHhCCCccce-E
Confidence 45555555443 346899999999999999999999882 222 6777765444 3333 33445565443321 1
Q ss_pred cCHHHHHHHHHHHh-cCCcEEEEeCCCC
Q 037625 222 RSVEEKALDIFRSL-REKRIVLLLDDIW 248 (467)
Q Consensus 222 ~~~~~~~~~l~~~l-~~k~~LlVlDdv~ 248 (467)
.-.+...+.+.+.+ +.++-|+|+|-+.
T Consensus 151 l~aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 151 LLAETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred EehhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 12223333444444 3578899999984
No 253
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.91 E-value=0.0052 Score=65.43 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=21.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
...++|+|+.|.|||||.+.+.-.
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHH
Confidence 468999999999999999998655
No 254
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.89 E-value=0.045 Score=54.26 Aligned_cols=87 Identities=23% Similarity=0.277 Sum_probs=47.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHH
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRS 234 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 234 (467)
.+++.++|++|+||||++..++... ........+..++..... ...+-+......++.+.. ...+..+....+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~- 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ- 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH-
Confidence 4589999999999999998887766 101223456666653321 122233344444444321 12233344443433
Q ss_pred hcCCcEEEEeCCC
Q 037625 235 LREKRIVLLLDDI 247 (467)
Q Consensus 235 l~~k~~LlVlDdv 247 (467)
+. ..=+|++|..
T Consensus 297 ~~-~~DlVlIDt~ 308 (424)
T PRK05703 297 LR-DCDVILIDTA 308 (424)
T ss_pred hC-CCCEEEEeCC
Confidence 33 3568888976
No 255
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.87 E-value=0.0056 Score=54.58 Aligned_cols=26 Identities=38% Similarity=0.469 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|+|||||++.+....
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998864
No 256
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.86 E-value=0.01 Score=61.17 Aligned_cols=47 Identities=23% Similarity=0.260 Sum_probs=38.8
Q ss_pred CCccccchHHHHHHHHHHhc--CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 134 ERTVVGLQSQLEQVWRCLAE--ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~~--~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...++|....++++.+.+.. .....|.|+|+.|+|||++|+.+.+..
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 35789999999998887753 334467899999999999999999875
No 257
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.86 E-value=0.0024 Score=52.89 Aligned_cols=42 Identities=31% Similarity=0.313 Sum_probs=32.0
Q ss_pred EEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHH
Q 037625 159 IGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQE 206 (467)
Q Consensus 159 i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 206 (467)
|.|+|++|+|||+||+.+++.. . .....+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~---~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---G---RPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---T---CEEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHh---h---cceEEEEecccccccccee
Confidence 6899999999999999999987 1 2344567777777777654
No 258
>PRK06547 hypothetical protein; Provisional
Probab=96.85 E-value=0.0017 Score=55.88 Aligned_cols=34 Identities=24% Similarity=0.219 Sum_probs=27.7
Q ss_pred HHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 147 VWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 147 l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+...+......+|+|.|++|+||||+|+.+.+..
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344445677899999999999999999998875
No 259
>PHA00729 NTP-binding motif containing protein
Probab=96.84 E-value=0.0014 Score=58.24 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=28.4
Q ss_pred HHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 146 QVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 146 ~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+.+.+.+.....|.|+|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555555566689999999999999999999875
No 260
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.83 E-value=0.0058 Score=55.35 Aligned_cols=124 Identities=17% Similarity=0.163 Sum_probs=70.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCC-----CCCHHHHHHHHHHHhcCCCCCC-----CCcCH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK-----DLRLEKIQEDIGKKIGLVGDSW-----KSRSV 224 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~~~-----~~~~~ 224 (467)
+..+++|+|.+|+|||||++.+..-. .-.. ..++..-.+ .....+-..+++..+++..+.. .-...
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~---~pt~-G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE---EPTS-GEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc---CCCC-ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 45689999999999999999999876 2222 233332111 1223344556666666433211 11122
Q ss_pred HHHHHHHHHHhcCCcEEEEeCCCCChhh------hhhhccCCCCCCCCCceEEEecCChhhhhhcC
Q 037625 225 EEKALDIFRSLREKRIVLLLDDIWERVD------LTKVGVPLSGPKNTTSKVVFTTRFIGVCGSME 284 (467)
Q Consensus 225 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~~~~~l~~~~~~~s~iiiTtR~~~~~~~~~ 284 (467)
+..--.+.+.|.-++-++|.|+.-+..+ ...+..-+ ....|...+..|.+-.+...+.
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dl--q~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDL--QEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHH--HHHhCCeEEEEEEEHHhhhhhc
Confidence 2222345566778899999999743211 11111111 2234677888888887776554
No 261
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.82 E-value=0.0043 Score=53.63 Aligned_cols=119 Identities=21% Similarity=0.188 Sum_probs=65.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCC---CCHHHHHHHHHHHhcC--CCC--CCCCcCHH--
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD---LRLEKIQEDIGKKIGL--VGD--SWKSRSVE-- 225 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~--~~~--~~~~~~~~-- 225 (467)
....|.|+|..|-||||+|..++-+. ..+--.+..+..-+. ..-...+..+- .+.. .+. .+...+.+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra---~g~G~~V~ivQFlKg~~~~GE~~~l~~l~-~v~~~~~g~~~~~~~~~~~e~ 96 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRA---VGHGKKVGVVQFIKGAWSTGERNLLEFGG-GVEFHVMGTGFTWETQDRERD 96 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHH---HHCCCeEEEEEEecCCCccCHHHHHhcCC-CcEEEECCCCCcccCCCcHHH
Confidence 35689999999999999998887776 333344555554332 23333333321 1100 000 01111111
Q ss_pred -----HHHHHHHHHhcC-CcEEEEeCCCCC-----hhhhhhhccCCCCCCCCCceEEEecCChh
Q 037625 226 -----EKALDIFRSLRE-KRIVLLLDDIWE-----RVDLTKVGVPLSGPKNTTSKVVFTTRFIG 278 (467)
Q Consensus 226 -----~~~~~l~~~l~~-k~~LlVlDdv~~-----~~~~~~~~~~l~~~~~~~s~iiiTtR~~~ 278 (467)
......++.+.. +-=|||||++-. .-..+++...+ ...+.+..||+|-|+.+
T Consensus 97 ~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L-~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 97 IAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEAL-NARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHH-HcCCCCCEEEEECCCCC
Confidence 122333444444 445999999842 22334444444 45566789999999763
No 262
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.82 E-value=0.0038 Score=54.94 Aligned_cols=78 Identities=15% Similarity=0.154 Sum_probs=43.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL 235 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 235 (467)
..+|+|.|.+|+||||+|+.++..+ +...-.+ ++...-.. ..-............+.....+.+-+.+.|...+
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~~~---~~~~~~~--I~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~ 81 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQL---GVEKVVV--ISLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLK 81 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHh---CcCcceE--eecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHHHHHH
Confidence 4689999999999999999999998 3332222 11111000 0000001111122222234556677777788887
Q ss_pred cCCc
Q 037625 236 REKR 239 (467)
Q Consensus 236 ~~k~ 239 (467)
.+++
T Consensus 82 ~g~~ 85 (218)
T COG0572 82 QGKP 85 (218)
T ss_pred cCCc
Confidence 7776
No 263
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.82 E-value=0.012 Score=51.98 Aligned_cols=46 Identities=28% Similarity=0.446 Sum_probs=37.8
Q ss_pred CccccchHHHHHHHHHHh----cCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 135 RTVVGLQSQLEQVWRCLA----EESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~----~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++|.+...+.|.+.-. .-...-|.+||-.|+|||+|++++.+..
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 568999988888877543 2345578999999999999999999987
No 264
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.79 E-value=0.001 Score=54.16 Aligned_cols=22 Identities=36% Similarity=0.751 Sum_probs=20.3
Q ss_pred EEEEccCCCcHHHHHHHHHhcc
Q 037625 159 IGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 159 i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
|+|.|.+|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999874
No 265
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.78 E-value=0.0078 Score=59.53 Aligned_cols=57 Identities=25% Similarity=0.292 Sum_probs=36.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHhcC
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-LRLEKIQEDIGKKIGL 214 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~ 214 (467)
...+|.++|++|+||||++..++..+ ... .+ .+..++.... ....+.+..++..++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L-~~~-g~-kV~lV~~D~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF-KKK-GL-KVGLVAADTYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-HHc-CC-eEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 35689999999999999999999877 222 22 3444443321 1234445556666654
No 266
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.77 E-value=0.014 Score=55.87 Aligned_cols=93 Identities=17% Similarity=0.191 Sum_probs=57.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccC---CCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC-------CCCcCH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLE---SPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDS-------WKSRSV 224 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 224 (467)
...+.-|+|++|+|||+|+.+++-..+. ..+.-..++|++....+++..+.. ++..++...+. ....+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCH
Confidence 3467889999999999999888643311 122235789999999888888754 55666543211 012233
Q ss_pred HHHHHH---HHHHh-cCCcEEEEeCCCC
Q 037625 225 EEKALD---IFRSL-REKRIVLLLDDIW 248 (467)
Q Consensus 225 ~~~~~~---l~~~l-~~k~~LlVlDdv~ 248 (467)
++.... +...+ ..+--|||+|.+-
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 333332 32233 2345688999873
No 267
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.77 E-value=0.0024 Score=59.76 Aligned_cols=133 Identities=16% Similarity=0.227 Sum_probs=72.8
Q ss_pred ccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHH--HhcccCCCCCCCeEEEE----EeCCC---------CCHH
Q 037625 138 VGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHI--NNKFLESPTNFDCVIWV----VVSKD---------LRLE 202 (467)
Q Consensus 138 vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v--~~~~~~~~~~f~~~~wv----~~~~~---------~~~~ 202 (467)
-+|..+..--+++|.++....|.+.|.+|+|||-||-+. ++-. .+..|..++-. .+++. .-..
T Consensus 227 ~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~--e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~ 304 (436)
T COG1875 227 RPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVL--ERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMG 304 (436)
T ss_pred CcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHH--HHhhhceEEEecCCcCcccccCcCCCchhhhcc
Confidence 457777777788899999999999999999999888553 2222 23333332211 12221 1122
Q ss_pred HHHHHHHHHhcCCCCCCCCcCHHHHHHHHH----------HHhcCC---cEEEEeCCCCCh--hhhhhhccCCCCCCCCC
Q 037625 203 KIQEDIGKKIGLVGDSWKSRSVEEKALDIF----------RSLREK---RIVLLLDDIWER--VDLTKVGVPLSGPKNTT 267 (467)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~----------~~l~~k---~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~ 267 (467)
.....|...+...... .... ....+.+. .+.+++ .-++|+|+..+. .+...+ + ...+.|
T Consensus 305 PWmq~i~DnLE~L~~~-~~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTi---l-tR~G~G 378 (436)
T COG1875 305 PWMQAIFDNLEVLFSP-NEPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTI---L-TRAGEG 378 (436)
T ss_pred chHHHHHhHHHHHhcc-cccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHH---H-HhccCC
Confidence 3333333333211110 1111 22222221 122343 469999999753 344444 2 456889
Q ss_pred ceEEEecCChh
Q 037625 268 SKVVFTTRFIG 278 (467)
Q Consensus 268 s~iiiTtR~~~ 278 (467)
|||+.|.-...
T Consensus 379 sKIVl~gd~aQ 389 (436)
T COG1875 379 SKIVLTGDPAQ 389 (436)
T ss_pred CEEEEcCCHHH
Confidence 99998876443
No 268
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.77 E-value=0.0034 Score=53.26 Aligned_cols=118 Identities=21% Similarity=0.220 Sum_probs=61.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL 235 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 235 (467)
..+++|.|+.|.|||||++.+.... ......+++.-....... .......++.... -...+...-.+...+
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~~--~~~~~~~i~~~~q---lS~G~~~r~~l~~~l 95 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKLP--LEELRRRIGYVPQ---LSGGQRQRVALARAL 95 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccCC--HHHHHhceEEEee---CCHHHHHHHHHHHHH
Confidence 4689999999999999999998876 223444444322111100 0111122221110 111223333345555
Q ss_pred cCCcEEEEeCCCCC---hhhhhhhccCCCCCCCCCceEEEecCChhhhhh
Q 037625 236 REKRIVLLLDDIWE---RVDLTKVGVPLSGPKNTTSKVVFTTRFIGVCGS 282 (467)
Q Consensus 236 ~~k~~LlVlDdv~~---~~~~~~~~~~l~~~~~~~s~iiiTtR~~~~~~~ 282 (467)
...+-++++|+... ......+...+......+..++++|.+......
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 56688999999853 222222222221111225678888887766443
No 269
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.77 E-value=0.011 Score=56.53 Aligned_cols=58 Identities=19% Similarity=0.326 Sum_probs=40.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCC---CCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLES---PTNFDCVIWVVVSKDLRLEKIQEDIGKKIG 213 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 213 (467)
...++-|+|++|+|||+++.+++...... ...-..++|++....++...+.+ ++..++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 35688999999999999999988764111 11124799999988777776644 344444
No 270
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.021 Score=53.85 Aligned_cols=49 Identities=29% Similarity=0.345 Sum_probs=35.4
Q ss_pred ccccchHHHHHHHHHHhc--------------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCC
Q 037625 136 TVVGLQSQLEQVWRCLAE--------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNF 187 (467)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~--------------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f 187 (467)
++-|.+..++.+.+...- ...+-|.++||+|+|||-||+.++... ...|
T Consensus 93 DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea---ga~f 155 (386)
T KOG0737|consen 93 DIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA---GANF 155 (386)
T ss_pred hccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc---CCCc
Confidence 445666666666665431 134568999999999999999999987 5555
No 271
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.019 Score=54.43 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=22.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
-+-|..+||+|+|||-||++|+...
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHhh
Confidence 4568999999999999999999987
No 272
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.75 E-value=0.0025 Score=53.15 Aligned_cols=103 Identities=23% Similarity=0.244 Sum_probs=55.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRS 234 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 234 (467)
...+++|.|+.|.|||||++.+.... ......+++.-. ..++... .-...+...-.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~~~-------------~~i~~~~---~lS~G~~~rv~lara 84 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL----EPDEGIVTWGST-------------VKIGYFE---QLSGGEKMRLALAKL 84 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC----CCCceEEEECCe-------------EEEEEEc---cCCHHHHHHHHHHHH
Confidence 34689999999999999999998865 122333333210 0011000 011122222334555
Q ss_pred hcCCcEEEEeCCCCC---hhhhhhhccCCCCCCCCCceEEEecCChhhh
Q 037625 235 LREKRIVLLLDDIWE---RVDLTKVGVPLSGPKNTTSKVVFTTRFIGVC 280 (467)
Q Consensus 235 l~~k~~LlVlDdv~~---~~~~~~~~~~l~~~~~~~s~iiiTtR~~~~~ 280 (467)
+-.++-++++|+... ......+...+ ... +..||++|.+....
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l-~~~--~~til~~th~~~~~ 130 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEAL-KEY--PGTVILVSHDRYFL 130 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHc--CCEEEEEECCHHHH
Confidence 566778999999742 22333333222 111 24678888776554
No 273
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.75 E-value=0.0077 Score=55.58 Aligned_cols=91 Identities=20% Similarity=0.119 Sum_probs=58.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC--CCCCCcCHHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVG--DSWKSRSVEEKALDIF 232 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~~~l~ 232 (467)
..+++=|+|+.|+||||+|.+++-.. ......++|++....+++..+..-....+.... .........+.++.+.
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 45688999999999999999887766 344458999999998888776443322122110 0011222334444455
Q ss_pred HHhcCCcEEEEeCCCC
Q 037625 233 RSLREKRIVLLLDDIW 248 (467)
Q Consensus 233 ~~l~~k~~LlVlDdv~ 248 (467)
.....+--|+|+|.+-
T Consensus 136 ~~~~~~i~LvVVDSva 151 (279)
T COG0468 136 RSGAEKIDLLVVDSVA 151 (279)
T ss_pred HhccCCCCEEEEecCc
Confidence 5544556799999984
No 274
>PRK04328 hypothetical protein; Provisional
Probab=96.74 E-value=0.0053 Score=56.38 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=31.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCC
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD 198 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~ 198 (467)
...++.|.|++|+|||+|+.++.... -......+|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCC
Confidence 45689999999999999999876654 133456788877653
No 275
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.74 E-value=0.014 Score=52.74 Aligned_cols=123 Identities=20% Similarity=0.253 Sum_probs=68.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCC-------------CCCeEEEEEeCCC------CCH---------------
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPT-------------NFDCVIWVVVSKD------LRL--------------- 201 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~-------------~f~~~~wv~~~~~------~~~--------------- 201 (467)
..+++|.||.|.|||||.+.+..-....++ .-..+.|+.=... .++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 368999999999999999999884411110 0124555531110 011
Q ss_pred -------HHHHHHHHHHhcCCC---CCCCCcCHHHHH-HHHHHHhcCCcEEEEeCCCCC---h---hhhhhhccCCCCCC
Q 037625 202 -------EKIQEDIGKKIGLVG---DSWKSRSVEEKA-LDIFRSLREKRIVLLLDDIWE---R---VDLTKVGVPLSGPK 264 (467)
Q Consensus 202 -------~~~~~~i~~~l~~~~---~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~---~---~~~~~~~~~l~~~~ 264 (467)
.+...+.++.++... ......+.-+.+ -.+.+.|..++=|++||+--. . ..+-.+...+ .
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l---~ 186 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKEL---R 186 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHH---H
Confidence 133344444444321 112223333333 345667888899999998532 1 2222222222 2
Q ss_pred CCCceEEEecCChhhhh
Q 037625 265 NTTSKVVFTTRFIGVCG 281 (467)
Q Consensus 265 ~~~s~iiiTtR~~~~~~ 281 (467)
..|..|++.|.+-....
T Consensus 187 ~eg~tIl~vtHDL~~v~ 203 (254)
T COG1121 187 QEGKTVLMVTHDLGLVM 203 (254)
T ss_pred HCCCEEEEEeCCcHHhH
Confidence 33899999999876643
No 276
>PRK07667 uridine kinase; Provisional
Probab=96.74 E-value=0.0031 Score=55.49 Aligned_cols=37 Identities=22% Similarity=0.463 Sum_probs=29.5
Q ss_pred HHHHHHHHhc--CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 144 LEQVWRCLAE--ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 144 ~~~l~~~L~~--~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+.+.+.+.. +...+|+|.|.+|+||||+|+.+...+
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4556666653 345689999999999999999999887
No 277
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.73 E-value=0.0024 Score=63.20 Aligned_cols=44 Identities=11% Similarity=0.160 Sum_probs=38.7
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++||++.++.+...+..+. .|.|.|++|+|||+||+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHh
Confidence 468999999999999887553 68899999999999999999876
No 278
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.72 E-value=0.0058 Score=61.05 Aligned_cols=95 Identities=22% Similarity=0.328 Sum_probs=55.1
Q ss_pred HHHHHHHhcC--CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCC---
Q 037625 145 EQVWRCLAEE--SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSW--- 219 (467)
Q Consensus 145 ~~l~~~L~~~--~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--- 219 (467)
..+-+.|..+ ...++.|.|++|+|||||+.+++.... ..-..++|++.... ..++... +..++...+..
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~ 140 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLL 140 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEe
Confidence 3444444432 345899999999999999999988762 22346788776543 3444332 44454322111
Q ss_pred CCcCHHHHHHHHHHHhcCCcEEEEeCCCC
Q 037625 220 KSRSVEEKALDIFRSLREKRIVLLLDDIW 248 (467)
Q Consensus 220 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 248 (467)
...+.+++...+. +.+.-++|+|.+.
T Consensus 141 ~e~~l~~i~~~i~---~~~~~lVVIDSIq 166 (446)
T PRK11823 141 AETNLEAILATIE---EEKPDLVVIDSIQ 166 (446)
T ss_pred CCCCHHHHHHHHH---hhCCCEEEEechh
Confidence 1123333333322 2356789999974
No 279
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.71 E-value=0.0017 Score=53.67 Aligned_cols=24 Identities=46% Similarity=0.516 Sum_probs=22.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.-|+|+|++|+||||+++.+.+.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 468999999999999999999888
No 280
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0073 Score=53.13 Aligned_cols=64 Identities=16% Similarity=0.224 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCcEEEEeCCCCChhhh---hhhccCCCCCCCCCceEEEecCChhhhhhcCCCcccc
Q 037625 227 KALDIFRSLREKRIVLLLDDIWERVDL---TKVGVPLSGPKNTTSKVVFTTRFIGVCGSMEADRKFL 290 (467)
Q Consensus 227 ~~~~l~~~l~~k~~LlVlDdv~~~~~~---~~~~~~l~~~~~~~s~iiiTtR~~~~~~~~~~~~~~~ 290 (467)
....+.+.+-=++-+.|||+.++--+. ..+..........++-++|.|..+.++....++.++-
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhv 217 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHV 217 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEE
Confidence 334455555567889999999864332 2222222122445778888888888887776655443
No 281
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.68 E-value=0.007 Score=53.49 Aligned_cols=23 Identities=30% Similarity=0.289 Sum_probs=20.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHhc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
++++|+|+.|.|||||.+.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 79999999999999999998753
No 282
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.67 E-value=0.0024 Score=52.72 Aligned_cols=44 Identities=20% Similarity=0.447 Sum_probs=34.4
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLV 215 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 215 (467)
+|.|.|++|+||||+|+.++++. .-.+ .+...+++++++..+++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~-----------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKL-----------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCce-----------eeccHHHHHHHHHcCCC
Confidence 68999999999999999999987 2221 13346788888888764
No 283
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.67 E-value=0.008 Score=56.27 Aligned_cols=87 Identities=24% Similarity=0.326 Sum_probs=46.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHH
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRS 234 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 234 (467)
.++++|+|++|+||||++..++... .....-..+..++..... ...+.+......++.+.. ...+...+...+ +.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~-~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l-~~ 269 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARF-VLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKAL-DR 269 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHH-HH
Confidence 4689999999999999999988776 211111345555543321 223333444444443321 122333333333 33
Q ss_pred hcCCcEEEEeCCC
Q 037625 235 LREKRIVLLLDDI 247 (467)
Q Consensus 235 l~~k~~LlVlDdv 247 (467)
+.+ .=+|++|..
T Consensus 270 ~~~-~d~vliDt~ 281 (282)
T TIGR03499 270 LRD-KDLILIDTA 281 (282)
T ss_pred ccC-CCEEEEeCC
Confidence 333 347777753
No 284
>PTZ00035 Rad51 protein; Provisional
Probab=96.67 E-value=0.019 Score=55.03 Aligned_cols=93 Identities=19% Similarity=0.242 Sum_probs=54.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccC---CCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC-------CCCcCH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLE---SPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDS-------WKSRSV 224 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 224 (467)
...++.|+|++|+|||+|+..++-.... ....-..++|++....++...+ ..++...+..... ....+.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~~ 195 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYNH 195 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCCH
Confidence 3568999999999999999988754410 1123346779988777766664 3445554432110 012233
Q ss_pred HHHHHHH---HHHh-cCCcEEEEeCCCC
Q 037625 225 EEKALDI---FRSL-REKRIVLLLDDIW 248 (467)
Q Consensus 225 ~~~~~~l---~~~l-~~k~~LlVlDdv~ 248 (467)
++....+ ...+ ..+.-|||+|.+.
T Consensus 196 e~~~~~l~~~~~~l~~~~~~lvVIDSit 223 (337)
T PTZ00035 196 EHQMQLLSQAAAKMAEERFALLIVDSAT 223 (337)
T ss_pred HHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 3333333 2333 2355688999874
No 285
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.67 E-value=0.0021 Score=59.75 Aligned_cols=56 Identities=20% Similarity=0.304 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHH
Q 037625 145 EQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKI 204 (467)
Q Consensus 145 ~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 204 (467)
..+++.+...+ +.+.++|+.|+|||++++...... . ...+ .+.-++.+...+...+
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l-~-~~~~-~~~~~~~s~~Tts~~~ 78 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSL-D-SDKY-LVITINFSAQTTSNQL 78 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCS-T-TCCE-EEEEEES-TTHHHHHH
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccC-C-cccc-ceeEeeccCCCCHHHH
Confidence 45566665553 567899999999999999988776 2 1221 2444555555444443
No 286
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.65 E-value=0.013 Score=53.22 Aligned_cols=40 Identities=30% Similarity=0.352 Sum_probs=29.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCC
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK 197 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 197 (467)
....+.|.|++|+|||||+.+++.... .....++|++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~ 58 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEE 58 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccC
Confidence 356899999999999999998776541 2245678887643
No 287
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.65 E-value=0.0035 Score=61.24 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=21.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
-..++|.|++|+||||||+.+.--+
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHccc
Confidence 4589999999999999999987655
No 288
>PRK08233 hypothetical protein; Provisional
Probab=96.64 E-value=0.0017 Score=56.60 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=22.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+|+|.|++|+||||||+.++..+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999876
No 289
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.64 E-value=0.0046 Score=60.80 Aligned_cols=46 Identities=22% Similarity=0.233 Sum_probs=35.9
Q ss_pred CccccchHHHHHHHHHHhc-------C---------CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 135 RTVVGLQSQLEQVWRCLAE-------E---------SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~-------~---------~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++|.+..++.+...+.+ . ..+.+.++|++|+|||+||+.++...
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 4579999988888655521 0 13568999999999999999999876
No 290
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.64 E-value=0.011 Score=51.63 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=21.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
...+++|.||+|+|||||.+.+..-
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3468999999999999999988654
No 291
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.63 E-value=0.0016 Score=46.55 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=20.8
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+|+|.|++|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 292
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.63 E-value=0.004 Score=64.48 Aligned_cols=75 Identities=12% Similarity=0.159 Sum_probs=57.2
Q ss_pred CCccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 037625 134 ERTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIG 213 (467)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 213 (467)
-+.++|.+..++.|...+... +.+.++|++|+||||+|+.+++.+ ....++..+|..- ...+...+++.++.+++
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l--~~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELL--PKEELQDILVYPN-PEDPNNPKIRTVPAGKG 104 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHc--ChHhHHHheEeeC-CCcchHHHHHHHHHhcC
Confidence 356899998888888877655 478999999999999999999887 2334677788655 44467777777776654
No 293
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.63 E-value=0.0083 Score=54.51 Aligned_cols=26 Identities=35% Similarity=0.593 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|+|||||.+.++.-.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 35689999999999999999998865
No 294
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.63 E-value=0.0072 Score=52.65 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|.|||||.+.++...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998765
No 295
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.62 E-value=0.0079 Score=53.75 Aligned_cols=26 Identities=38% Similarity=0.537 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|+|||||++.++...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998764
No 296
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.62 E-value=0.0017 Score=54.01 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=21.1
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+|.+.|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 58899999999999999999776
No 297
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.62 E-value=0.003 Score=63.18 Aligned_cols=92 Identities=25% Similarity=0.283 Sum_probs=49.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEE-eC-CCCCHHHHHHHHHHHhcCCCCCCCCc---CHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVV-VS-KDLRLEKIQEDIGKKIGLVGDSWKSR---SVEEKAL 229 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~~-~~~~~~~~~~~i~~~l~~~~~~~~~~---~~~~~~~ 229 (467)
.-...+|+|++|+|||||++.+++... ..+.++.+++. +. +...+.++.+.+-..+-...-..... ......-
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~--~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai 492 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAIT--TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAI 492 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHh--hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999762 23444444333 33 33344444443311111111100000 0111222
Q ss_pred HHHHHh--cCCcEEEEeCCCC
Q 037625 230 DIFRSL--REKRIVLLLDDIW 248 (467)
Q Consensus 230 ~l~~~l--~~k~~LlVlDdv~ 248 (467)
.+.+++ .++.+||++|++.
T Consensus 493 ~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 493 ERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHHcCCCEEEEEeCch
Confidence 233334 5789999999985
No 298
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.62 E-value=0.0075 Score=59.51 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=22.0
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++.++|++|+||||.+..++...
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH
Confidence 5689999999999999998887765
No 299
>PRK10867 signal recognition particle protein; Provisional
Probab=96.62 E-value=0.0076 Score=59.47 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=22.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+|.++|++|+||||.+..++..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 35789999999999999888887765
No 300
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.62 E-value=0.013 Score=52.08 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|+|||||++.++...
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998764
No 301
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.62 E-value=0.018 Score=55.16 Aligned_cols=93 Identities=14% Similarity=0.245 Sum_probs=56.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccC---CCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCC-------CCcCH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLE---SPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSW-------KSRSV 224 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~ 224 (467)
...++-|+|++|+|||+|+..++-.... ....-..++|++....+.+..+ .++++.++...+.. ...+.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~~~~l~~i~~~~~~~~ 200 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNGADVLENVAYARAYNT 200 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCChhhhccceEEEecCCH
Confidence 3568899999999999999888754311 1122237999999998888776 45566655432110 11233
Q ss_pred HHHHHHHH---HHh-cCCcEEEEeCCCC
Q 037625 225 EEKALDIF---RSL-REKRIVLLLDDIW 248 (467)
Q Consensus 225 ~~~~~~l~---~~l-~~k~~LlVlDdv~ 248 (467)
+.....+. ..+ ..+.-|||+|.+-
T Consensus 201 e~~~~ll~~~~~~~~~~~~~LIVIDSI~ 228 (342)
T PLN03186 201 DHQSELLLEAASMMAETRFALMIVDSAT 228 (342)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEeCcH
Confidence 33333222 223 3456688888873
No 302
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.61 E-value=0.015 Score=51.57 Aligned_cols=26 Identities=42% Similarity=0.662 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+..+++|.|+.|+|||||++.++...
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999998765
No 303
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.59 E-value=0.016 Score=55.23 Aligned_cols=58 Identities=17% Similarity=0.263 Sum_probs=40.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCC---CCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLES---PTNFDCVIWVVVSKDLRLEKIQEDIGKKIG 213 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 213 (467)
...++-|+|++|+|||+++.+++.....- ...-..++|++....++...+. +++..++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 35688999999999999999988765210 1112379999988877777654 3444444
No 304
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.57 E-value=0.0056 Score=59.39 Aligned_cols=46 Identities=22% Similarity=0.301 Sum_probs=37.7
Q ss_pred CccccchHHHHHHHHHHhcC--------------CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 135 RTVVGLQSQLEQVWRCLAEE--------------SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~--------------~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++|.++.++.+.-.+.+. ..+.|.++|++|+|||++|+.++...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999988887666531 23678999999999999999999987
No 305
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.55 E-value=0.016 Score=55.03 Aligned_cols=92 Identities=14% Similarity=0.221 Sum_probs=53.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccC---CCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCC-------CCcCH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLE---SPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSW-------KSRSV 224 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~ 224 (467)
...++.|+|++|+|||+|+..++..... .......++|++....+....+ ..++..++...... ...+.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~~l~~i~~~~~~~~ 173 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPEDVLDNVAYARAYNT 173 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHHhhccEEEEecCCh
Confidence 3568999999999999999988764311 1112246789988877776653 34455444322110 11223
Q ss_pred HHHH---HHHHHHhc-CCcEEEEeCCC
Q 037625 225 EEKA---LDIFRSLR-EKRIVLLLDDI 247 (467)
Q Consensus 225 ~~~~---~~l~~~l~-~k~~LlVlDdv 247 (467)
++.. ..+...+. .+.-|||+|.+
T Consensus 174 ~~~~~~l~~~~~~~~~~~~~LvVIDSI 200 (316)
T TIGR02239 174 DHQLQLLQQAAAMMSESRFALLIVDSA 200 (316)
T ss_pred HHHHHHHHHHHHhhccCCccEEEEECc
Confidence 3322 22223332 35568888887
No 306
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.55 E-value=0.019 Score=56.34 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=21.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+++++|+.|+||||++..++...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999887653
No 307
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.54 E-value=0.011 Score=54.91 Aligned_cols=34 Identities=29% Similarity=0.301 Sum_probs=28.0
Q ss_pred HHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 147 VWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 147 l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...++...+..++.|.|.+|+|||||+..+.+.+
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3334445578899999999999999999999987
No 308
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.53 E-value=0.0074 Score=53.08 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=32.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCC-------CCeEEEEEeCCCCCHHHHHHHHH
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTN-------FDCVIWVVVSKDLRLEKIQEDIG 209 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~-------f~~~~wv~~~~~~~~~~~~~~i~ 209 (467)
..++.|.|++|+||||++..++......... -..++|++.... ...+.+.+.
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~ 90 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLR 90 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHH
Confidence 3588999999999999999988877332222 236778776655 334444443
No 309
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.52 E-value=0.017 Score=51.80 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|+|||||++.++...
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998765
No 310
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.51 E-value=0.0092 Score=61.95 Aligned_cols=74 Identities=15% Similarity=0.191 Sum_probs=50.7
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIG 213 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 213 (467)
+.++|.++.++.+...+... +.+.++|++|+||||+++.+++.+ . ...|...+++. ....+..+++..++..++
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l-~-~~~~~~~~~~~-n~~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELL-P-DEELEDILVYP-NPEDPNMPRIVEVPAGEG 91 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHc-C-chhheeEEEEe-CCCCCchHHHHHHHHhhc
Confidence 56789998888888877665 366699999999999999999987 2 22333344333 233345555666665554
No 311
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.51 E-value=0.0022 Score=57.31 Aligned_cols=26 Identities=38% Similarity=0.558 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+..+|+|.|++|+|||||++.++..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999876
No 312
>PTZ00301 uridine kinase; Provisional
Probab=96.50 E-value=0.0021 Score=57.06 Aligned_cols=25 Identities=36% Similarity=0.670 Sum_probs=22.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+|+|.|++|+||||||+.+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999988766
No 313
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.50 E-value=0.017 Score=48.50 Aligned_cols=23 Identities=35% Similarity=0.650 Sum_probs=21.1
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
++.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999876
No 314
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.042 Score=50.05 Aligned_cols=45 Identities=29% Similarity=0.428 Sum_probs=36.2
Q ss_pred ccccchHHHHHHHHHHhc-------------CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 136 TVVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~-------------~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
++=|.+..+++|.....- ...+-|.++|.+|.|||-||++|+|.-
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT 243 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT 243 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc
Confidence 356788999998887641 134567899999999999999999986
No 315
>PRK14974 cell division protein FtsY; Provisional
Probab=96.50 E-value=0.025 Score=54.02 Aligned_cols=90 Identities=18% Similarity=0.173 Sum_probs=48.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCC--CHHHHHHHHHHHhcCCCCC-CCCcCHHHHH-HH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL--RLEKIQEDIGKKIGLVGDS-WKSRSVEEKA-LD 230 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~-~~ 230 (467)
+..+|.++|++|+||||++..++..+ .. ..+ .++.+.. +.+ ...+-+...+..++.+... ....+..... ..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l-~~-~g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL-KK-NGF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-HH-cCC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 35789999999999999998888776 21 222 3333432 222 2334455566666643211 1122322222 22
Q ss_pred HHHHhcCCcEEEEeCCCC
Q 037625 231 IFRSLREKRIVLLLDDIW 248 (467)
Q Consensus 231 l~~~l~~k~~LlVlDdv~ 248 (467)
+........=++++|...
T Consensus 215 i~~~~~~~~DvVLIDTaG 232 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAG 232 (336)
T ss_pred HHHHHhCCCCEEEEECCC
Confidence 222222223389999874
No 316
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.49 E-value=0.0017 Score=51.12 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=19.9
Q ss_pred EEEEccCCCcHHHHHHHHHhcc
Q 037625 159 IGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 159 i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
|.|+|++|+|||+||+.++.++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999988877
No 317
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.48 E-value=0.01 Score=59.38 Aligned_cols=95 Identities=23% Similarity=0.337 Sum_probs=53.8
Q ss_pred HHHHHHHHhcC--CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCC--
Q 037625 144 LEQVWRCLAEE--SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSW-- 219 (467)
Q Consensus 144 ~~~l~~~L~~~--~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-- 219 (467)
+..+-+.|..+ ...++.|.|.+|+|||||+.+++..... .-..++|++.... ..++.. -+..++...+..
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~---~g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~ 153 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAK---NQMKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYV 153 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHh---cCCcEEEEECcCC--HHHHHH-HHHHcCCChHHeEE
Confidence 34445555432 4568999999999999999999877622 2235778776543 333332 223343321110
Q ss_pred -CCcCHHHHHHHHHHHhc-CCcEEEEeCCCC
Q 037625 220 -KSRSVEEKALDIFRSLR-EKRIVLLLDDIW 248 (467)
Q Consensus 220 -~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~ 248 (467)
...+.+. +.+.+. .+.-++|+|.+.
T Consensus 154 ~~e~~~~~----I~~~i~~~~~~~vVIDSIq 180 (454)
T TIGR00416 154 LSETNWEQ----ICANIEEENPQACVIDSIQ 180 (454)
T ss_pred cCCCCHHH----HHHHHHhcCCcEEEEecch
Confidence 1123333 333332 356789999874
No 318
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.48 E-value=0.0061 Score=58.82 Aligned_cols=112 Identities=17% Similarity=0.127 Sum_probs=61.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRS 234 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 234 (467)
....+.|.|+.|+||||+++.+.+.. .......++. +.++.... .... ..+- .... ...+.......+...
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~t-iEdp~E~~--~~~~-~~~i-~q~e-vg~~~~~~~~~l~~~ 191 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIIT-IEDPIEYV--HRNK-RSLI-NQRE-VGLDTLSFANALRAA 191 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEE-EcCChhhh--ccCc-cceE-Eccc-cCCCCcCHHHHHHHh
Confidence 35789999999999999999988876 2233333332 22221110 0000 0000 0000 111122345556777
Q ss_pred hcCCcEEEEeCCCCChhhhhhhccCCCCCCCCCceEEEecCChhh
Q 037625 235 LREKRIVLLLDDIWERVDLTKVGVPLSGPKNTTSKVVFTTRFIGV 279 (467)
Q Consensus 235 l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iiiTtR~~~~ 279 (467)
|...+=+|++|++.+.......... ...|..++.|....+.
T Consensus 192 lr~~pd~i~vgEird~~~~~~~l~a----a~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 192 LREDPDVILIGEMRDLETVELALTA----AETGHLVFGTLHTNSA 232 (343)
T ss_pred hccCCCEEEEeCCCCHHHHHHHHHH----HHcCCcEEEEEcCCCH
Confidence 8888999999999877665543221 2234456666665433
No 319
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.46 E-value=0.014 Score=54.01 Aligned_cols=40 Identities=18% Similarity=0.331 Sum_probs=31.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCC
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK 197 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 197 (467)
...++.|.|++|+|||+++.+++.... ..-..++|++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecC
Confidence 456899999999999999999876541 2345778888764
No 320
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.46 E-value=0.0053 Score=52.57 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=32.9
Q ss_pred cccchHHHHHHHHHHhc--CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 137 VVGLQSQLEQVWRCLAE--ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 137 ~vGr~~~~~~l~~~L~~--~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
++|....++++.+.+.. .....|.|+|+.|+||+.+|+.+.+.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 36778888888877753 233567899999999999999999865
No 321
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.45 E-value=0.0096 Score=52.75 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=22.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
...+++|.|+.|.|||||.+.++..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999876
No 322
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.45 E-value=0.017 Score=51.98 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=21.3
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+|+|.|++|+||||+|+.+...+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999877
No 323
>PRK14527 adenylate kinase; Provisional
Probab=96.45 E-value=0.0047 Score=54.32 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+|.|.|++|+||||+|+.+++..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998776
No 324
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.44 E-value=0.0026 Score=56.91 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=20.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHh
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINN 178 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~ 178 (467)
.+.+.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 37899999999999999999874
No 325
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.44 E-value=0.0057 Score=59.89 Aligned_cols=90 Identities=21% Similarity=0.272 Sum_probs=52.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCCCC----CCCCcCHHH---
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK-DLRLEKIQEDIGKKIGLVGD----SWKSRSVEE--- 226 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~--- 226 (467)
....++|.|+.|+|||||++.++... ..+.+++.-+.. ...+.++...++..-+.... .....+...
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 44679999999999999999998754 224555555544 44556666665444221100 001111111
Q ss_pred ---HHHHHHHHh--cCCcEEEEeCCCCC
Q 037625 227 ---KALDIFRSL--REKRIVLLLDDIWE 249 (467)
Q Consensus 227 ---~~~~l~~~l--~~k~~LlVlDdv~~ 249 (467)
....+.+++ +++.+||++||+..
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 111123333 58999999999953
No 326
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.44 E-value=0.016 Score=53.76 Aligned_cols=91 Identities=20% Similarity=0.184 Sum_probs=49.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCCCC-CCCCcCHHH-HHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKIQEDIGKKIGLVGD-SWKSRSVEE-KALDI 231 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-~~~~~~~~~-~~~~l 231 (467)
+.+++.++|++|+||||++..++... . ..-..+..++..... ...+-+.......+.... .....+... ....+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l-~--~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL-K--KQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-H--hcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 45789999999999999999998877 2 222355556543211 112333444455443210 001122222 22334
Q ss_pred HHHhcCCcEEEEeCCCC
Q 037625 232 FRSLREKRIVLLLDDIW 248 (467)
Q Consensus 232 ~~~l~~k~~LlVlDdv~ 248 (467)
.....+..=++++|-.-
T Consensus 148 ~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHCCCCEEEEeCCC
Confidence 33334445688888863
No 327
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.44 E-value=0.0063 Score=49.48 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhc--CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 142 SQLEQVWRCLAE--ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 142 ~~~~~l~~~L~~--~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
++.+++-+.+.. ....+|.+.|+-|+||||+++.+++.+
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 344444444443 234689999999999999999999987
No 328
>PRK05973 replicative DNA helicase; Provisional
Probab=96.44 E-value=0.018 Score=51.92 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=34.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDI 208 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 208 (467)
...++.|.|.+|+|||+++.+++.... ..-..++|++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a---~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM---KSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEEeCC--HHHHHHHH
Confidence 345899999999999999999877652 22345777766554 34444443
No 329
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.43 E-value=0.0062 Score=52.61 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=21.2
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.|.|.|++|+||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 330
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.43 E-value=0.017 Score=60.80 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
....|+|+|..|+|||||++.+..-.
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999987655
No 331
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.42 E-value=0.005 Score=55.83 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=24.3
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 154 ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 154 ~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
++..+++|.|++|+|||||++.+...+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999999887
No 332
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.42 E-value=0.014 Score=51.48 Aligned_cols=26 Identities=27% Similarity=0.521 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|.|||||.+.++...
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998754
No 333
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.40 E-value=0.011 Score=53.53 Aligned_cols=26 Identities=38% Similarity=0.623 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|+|||||++.++...
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998765
No 334
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.40 E-value=0.04 Score=54.61 Aligned_cols=40 Identities=23% Similarity=0.397 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHh-----cC--CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 141 QSQLEQVWRCLA-----EE--SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 141 ~~~~~~l~~~L~-----~~--~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+.+.++..||. .+ +.+++.|+||+|+||||-++.++..+
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 345677788887 33 45699999999999999999998876
No 335
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.40 E-value=0.023 Score=53.03 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=22.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+|+|.|+.|+||||+|+.+....
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999998876655
No 336
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.017 Score=61.38 Aligned_cols=100 Identities=18% Similarity=0.234 Sum_probs=65.6
Q ss_pred ccccchHHHHHHHHHHhcC--------CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHH
Q 037625 136 TVVGLQSQLEQVWRCLAEE--------SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQED 207 (467)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~--------~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 207 (467)
.++|.++.+..|.+.+... ......+.|+.|+|||-||+.++..+ .+..+..+-++.+....
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDmse~~e------- 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMSEFQE------- 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechhhhhh-------
Confidence 4577777777777777531 24467899999999999999999887 56666667776554322
Q ss_pred HHHHhcCCCCCCCCcCHHHHHHHHHHHhcCCc-EEEEeCCCCC
Q 037625 208 IGKKIGLVGDSWKSRSVEEKALDIFRSLREKR-IVLLLDDIWE 249 (467)
Q Consensus 208 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~ 249 (467)
+.+..+. .+ ..-..+....|.+.++.++ .+|+||||+.
T Consensus 633 vskligs-p~---gyvG~e~gg~LteavrrrP~sVVLfdeIEk 671 (898)
T KOG1051|consen 633 VSKLIGS-PP---GYVGKEEGGQLTEAVKRRPYSVVLFEEIEK 671 (898)
T ss_pred hhhccCC-Cc---ccccchhHHHHHHHHhcCCceEEEEechhh
Confidence 2222222 11 1122334457777887776 4778999974
No 337
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.39 E-value=0.0019 Score=51.68 Aligned_cols=28 Identities=36% Similarity=0.497 Sum_probs=19.8
Q ss_pred EEEEccCCCcHHHHHHHHHhcccCCCCCCCe
Q 037625 159 IGLYGMGGVGKTTLLTHINNKFLESPTNFDC 189 (467)
Q Consensus 159 i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~ 189 (467)
|.|+|.+|+||||+|+.++... ...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCceeE
Confidence 6799999999999999999987 556643
No 338
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.38 E-value=0.0029 Score=55.42 Aligned_cols=26 Identities=35% Similarity=0.395 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+.++|+|.|++|+||||+++.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998765
No 339
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=96.38 E-value=0.018 Score=54.18 Aligned_cols=25 Identities=44% Similarity=0.668 Sum_probs=23.0
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++++.|+.|.|||||.+.+....
T Consensus 31 Gei~gllG~NGAGKTTllk~l~gl~ 55 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGLL 55 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCc
Confidence 4589999999999999999999877
No 340
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.38 E-value=0.0058 Score=55.05 Aligned_cols=62 Identities=21% Similarity=0.253 Sum_probs=37.5
Q ss_pred HHHHHHHHHhc--CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHH
Q 037625 143 QLEQVWRCLAE--ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQ 205 (467)
Q Consensus 143 ~~~~l~~~L~~--~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 205 (467)
...++++.+.. ++..+|+|+|+||+|||||...+...+ ...++--.++-++-|.+++--.++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~-~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL-RERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH-HHTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH-hhcCCceEEEEECCCCCCCCCccc
Confidence 44555555543 467899999999999999999998887 323333455555555555544443
No 341
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.37 E-value=0.018 Score=55.53 Aligned_cols=89 Identities=22% Similarity=0.197 Sum_probs=48.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFR 233 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 233 (467)
+.++|+|+|++|+||||++..++..+ . ..-..+..++..... ...+-+...+..++.+.. ...+...+...+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L-~--~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL~~ 314 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF-H--GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALTY 314 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH-H--HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHHHH
Confidence 34789999999999999999998876 2 222234445443221 222233344444443321 12344444444433
Q ss_pred HhcC-CcEEEEeCCCC
Q 037625 234 SLRE-KRIVLLLDDIW 248 (467)
Q Consensus 234 ~l~~-k~~LlVlDdv~ 248 (467)
.-.. +.=+|++|-.-
T Consensus 315 lk~~~~~DvVLIDTaG 330 (436)
T PRK11889 315 FKEEARVDYILIDTAG 330 (436)
T ss_pred HHhccCCCEEEEeCcc
Confidence 3221 23477788763
No 342
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.37 E-value=0.028 Score=51.38 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=20.3
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+..|+|++|+|||+|+..++-..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHH
Confidence 56799999999999999998765
No 343
>PF13245 AAA_19: Part of AAA domain
Probab=96.37 E-value=0.0077 Score=43.86 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=18.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+.+++.|.|++|+|||+++.......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34678889999999995554444333
No 344
>PRK03839 putative kinase; Provisional
Probab=96.37 E-value=0.0028 Score=55.16 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=21.5
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.|.|.|++|+||||+++.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999987
No 345
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.36 E-value=0.11 Score=48.39 Aligned_cols=38 Identities=11% Similarity=0.060 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCC-cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 143 QLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 143 ~~~~l~~~L~~~~~-~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.-++|...+..++. ....++|+.|+||+++|..++..+
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~l 43 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLI 43 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHH
Confidence 45677777777654 467899999999999999988876
No 346
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.36 E-value=0.003 Score=56.30 Aligned_cols=26 Identities=38% Similarity=0.532 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+|+|.|++|+|||||++.++...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999876
No 347
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.35 E-value=0.0037 Score=52.32 Aligned_cols=36 Identities=28% Similarity=0.255 Sum_probs=27.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEE
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVV 194 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 194 (467)
..+|.|+|.+|+||||||+.+.+.+ ......+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L---~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL---FARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH---HHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEec
Confidence 3589999999999999999999998 33334555553
No 348
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.35 E-value=0.016 Score=51.69 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|+|||||++.++...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 34689999999999999999998754
No 349
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.34 E-value=0.019 Score=50.83 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|.|||||.+.++...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998764
No 350
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.31 E-value=0.011 Score=57.48 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=38.7
Q ss_pred CCccccchHHHHHHHHHHhcC--------------CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 134 ERTVVGLQSQLEQVWRCLAEE--------------SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~~~--------------~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...++|.+..++.+..++... ..+.+.++|++|+|||+||+.+....
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999988877531 13678999999999999999999887
No 351
>PRK05922 type III secretion system ATPase; Validated
Probab=96.30 E-value=0.012 Score=57.81 Aligned_cols=90 Identities=14% Similarity=0.269 Sum_probs=49.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEe-CCCCCHHHHHHHHHHHhcCCCCC----CCCcCH-H---
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVV-SKDLRLEKIQEDIGKKIGLVGDS----WKSRSV-E--- 225 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~-~--- 225 (467)
....++|.|+.|+|||||.+.+.... .. +...+.-+ .......+.+.+..........- ....+. .
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~----~~-d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS----KS-TINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC----CC-CceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 44579999999999999999998764 22 33333333 33344455555544333221100 001111 1
Q ss_pred --HHHHHHHHHh--cCCcEEEEeCCCCC
Q 037625 226 --EKALDIFRSL--REKRIVLLLDDIWE 249 (467)
Q Consensus 226 --~~~~~l~~~l--~~k~~LlVlDdv~~ 249 (467)
.....+.+++ +++.+|+++||+..
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1112233333 57999999999953
No 352
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.30 E-value=0.013 Score=52.26 Aligned_cols=87 Identities=23% Similarity=0.352 Sum_probs=53.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHhcCCCC----CCCCcCH-----
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-LRLEKIQEDIGKKIGLVGD----SWKSRSV----- 224 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~----- 224 (467)
+-..++|.|++|+|||+|+..+.++. .-+.++++-+.+. ....++.+++...-..... .....+.
T Consensus 14 ~Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~ 88 (215)
T PF00006_consen 14 RGQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYR 88 (215)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHH
T ss_pred cCCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhh
Confidence 34578999999999999999999986 2334477777644 5667777776543111000 0011111
Q ss_pred -----HHHHHHHHHHhcCCcEEEEeCCCC
Q 037625 225 -----EEKALDIFRSLREKRIVLLLDDIW 248 (467)
Q Consensus 225 -----~~~~~~l~~~l~~k~~LlVlDdv~ 248 (467)
-...++++. +++.+|+++||+.
T Consensus 89 ~~~~a~t~AEyfrd--~G~dVlli~Dslt 115 (215)
T PF00006_consen 89 APYTALTIAEYFRD--QGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHHHH--TTSEEEEEEETHH
T ss_pred hhccchhhhHHHhh--cCCceeehhhhhH
Confidence 122233333 6899999999984
No 353
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=96.30 E-value=0.012 Score=56.18 Aligned_cols=44 Identities=25% Similarity=0.490 Sum_probs=33.4
Q ss_pred cccchHHHHHHHHHHhc-----------------CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 137 VVGLQSQLEQVWRCLAE-----------------ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 137 ~vGr~~~~~~l~~~L~~-----------------~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..|-..+...|.+.+.. ....++.|+|.+|.||||+.+.+....
T Consensus 373 ~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~ 433 (593)
T COG2401 373 IKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQ 433 (593)
T ss_pred cccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHh
Confidence 45666777777776642 134589999999999999999987765
No 354
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.29 E-value=0.016 Score=50.92 Aligned_cols=120 Identities=21% Similarity=0.155 Sum_probs=64.0
Q ss_pred HHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCe--EEEEEeCCCCCHHHHHHHHHHHhcCC-CCC----C
Q 037625 147 VWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDC--VIWVVVSKDLRLEKIQEDIGKKIGLV-GDS----W 219 (467)
Q Consensus 147 l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~--~~wv~~~~~~~~~~~~~~i~~~l~~~-~~~----~ 219 (467)
++..|-+...--..|.|++|+|||||.+.++...+.....|-. +.-++-+ .+|+..+... ..+ .
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDer---------sEIag~~~gvpq~~~g~R~ 198 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDER---------SEIAGCLNGVPQHGRGRRM 198 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEecc---------chhhccccCCchhhhhhhh
Confidence 4555545555557899999999999999998877433334432 2222211 1222211110 000 0
Q ss_pred CCcCHHHHHHHHHHHhc-CCcEEEEeCCCCChhhhhhhccCCCCCCCCCceEEEecCChhh
Q 037625 220 KSRSVEEKALDIFRSLR-EKRIVLLLDDIWERVDLTKVGVPLSGPKNTTSKVVFTTRFIGV 279 (467)
Q Consensus 220 ~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iiiTtR~~~~ 279 (467)
+..+..-...-+....+ ..+=++|+|++....+-..+...+ ..|.+++.|..-..+
T Consensus 199 dVld~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~----~~GVkli~TaHG~~i 255 (308)
T COG3854 199 DVLDPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTAL----HAGVKLITTAHGNGI 255 (308)
T ss_pred hhcccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHH----hcCcEEEEeeccccH
Confidence 11111111111222222 356799999998766665554443 568898888775444
No 355
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.27 E-value=0.0091 Score=54.04 Aligned_cols=87 Identities=22% Similarity=0.227 Sum_probs=53.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCC-CCeEEEEEeCCCCCHHHHHHHHHHHhcCCC--------------CCC
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTN-FDCVIWVVVSKDLRLEKIQEDIGKKIGLVG--------------DSW 219 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--------------~~~ 219 (467)
...++.|.|++|+|||+|+.+++... -.. -..++|++...+. .++.+.+. .++... ...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~---~~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNG---LKNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH---HHHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHh---hhhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEecccc
Confidence 45689999999999999998876544 122 4467788765443 44444332 332110 000
Q ss_pred ----CCcCHHHHHHHHHHHhcC-CcEEEEeCCC
Q 037625 220 ----KSRSVEEKALDIFRSLRE-KRIVLLLDDI 247 (467)
Q Consensus 220 ----~~~~~~~~~~~l~~~l~~-k~~LlVlDdv 247 (467)
...+.......+.+.++. +...+|+|.+
T Consensus 92 ~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 92 RIGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp GST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 034667777777777654 4579999987
No 356
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.27 E-value=0.031 Score=53.31 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.3
Q ss_pred EEEEccCCCcHHHHHHHHHhcc
Q 037625 159 IGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 159 i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+++.|++|+||||+++.+.+.+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999877
No 357
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.27 E-value=0.0039 Score=56.22 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=21.2
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.|.|.|++|+||||+|+.+++..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999876
No 358
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.26 E-value=0.0069 Score=54.90 Aligned_cols=66 Identities=29% Similarity=0.354 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCC----CCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 037625 143 QLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLES----PTNFDCVIWVVVSKDLRLEKIQEDIGK 210 (467)
Q Consensus 143 ~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~ 210 (467)
..+.+...+.... +..|+|++|+||||++..+....... .......+-++...+..+..++..+..
T Consensus 6 Q~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 6 QREAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 4455555554332 68999999999998777766655110 123333333444444444455444443
No 359
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.26 E-value=0.036 Score=49.39 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|+|||||++.++...
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34689999999999999999998654
No 360
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.25 E-value=0.012 Score=57.98 Aligned_cols=90 Identities=23% Similarity=0.297 Sum_probs=50.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHh-----cCCCCCCCCcCHH----
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKI-----GLVGDSWKSRSVE---- 225 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-----~~~~~~~~~~~~~---- 225 (467)
....++|+|+.|+|||||++.+.... .....+++..-.+..++.++....+... ...... +.....
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qs-d~~~~~r~~~ 238 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATS-DESPMMRRLA 238 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcC-CCCHHHHHHH
Confidence 34579999999999999999887654 2223445544334555555544443332 111111 111111
Q ss_pred -HHHHHHHHHh--cCCcEEEEeCCCCC
Q 037625 226 -EKALDIFRSL--REKRIVLLLDDIWE 249 (467)
Q Consensus 226 -~~~~~l~~~l--~~k~~LlVlDdv~~ 249 (467)
.....+.+++ +++.+|+++||+..
T Consensus 239 ~~~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 239 PLTATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchHH
Confidence 1111223333 47999999999853
No 361
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.25 E-value=0.0065 Score=52.99 Aligned_cols=37 Identities=32% Similarity=0.454 Sum_probs=30.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEe
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVV 195 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 195 (467)
.+++.|+|+.|+|||||++.+.... ...|...+..+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeecc
Confidence 4789999999999999999999987 667755555443
No 362
>PRK04040 adenylate kinase; Provisional
Probab=96.23 E-value=0.0038 Score=54.57 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=22.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+|+|+|++|+||||+++.+.+.+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999887
No 363
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=96.23 E-value=0.012 Score=54.09 Aligned_cols=96 Identities=13% Similarity=0.141 Sum_probs=53.8
Q ss_pred CCcEEEEEccCCCcHHHHH-HHHHhcccCCCCCCCeE-EEEEeCC-CCCHHHHHHHHHHHhcCCC-----CCCCCcC---
Q 037625 155 SAGIIGLYGMGGVGKTTLL-THINNKFLESPTNFDCV-IWVVVSK-DLRLEKIQEDIGKKIGLVG-----DSWKSRS--- 223 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~~~-~wv~~~~-~~~~~~~~~~i~~~l~~~~-----~~~~~~~--- 223 (467)
+-..++|.|.+|+|||+|+ ..+.+.. .-+.+ +++-+.+ .....++...+...-.... ...+...
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 3457899999999999996 5565543 22333 4555544 4566777777764322110 0001111
Q ss_pred ------HHHHHHHHHHHhcCCcEEEEeCCCCCh-hhhhhhc
Q 037625 224 ------VEEKALDIFRSLREKRIVLLLDDIWER-VDLTKVG 257 (467)
Q Consensus 224 ------~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~ 257 (467)
.-..++.++. +++.+||++||+... ..++++.
T Consensus 143 ~~a~~~a~aiAE~fr~--~G~~Vlvl~DslTr~A~A~rEis 181 (274)
T cd01132 143 YLAPYTGCAMGEYFMD--NGKHALIIYDDLSKQAVAYRQMS 181 (274)
T ss_pred HHHHHHHHHHHHHHHH--CCCCEEEEEcChHHHHHHHHHHH
Confidence 1122233333 579999999999543 3455543
No 364
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.23 E-value=0.025 Score=55.13 Aligned_cols=89 Identities=18% Similarity=0.184 Sum_probs=51.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCC-CCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESP-TNFDCVIWVVVSKDL-RLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFR 233 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 233 (467)
.++|.++|+.|+||||.+..++....... ..-..+..++..... .....+...+..++.+.. ...+.......+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L~~ 251 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEITQ 251 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHHHH
Confidence 46899999999999999999887762111 123345555554322 223335555665655321 22333444333333
Q ss_pred HhcCCcEEEEeCCCC
Q 037625 234 SLREKRIVLLLDDIW 248 (467)
Q Consensus 234 ~l~~k~~LlVlDdv~ 248 (467)
+ .+.-++++|...
T Consensus 252 -~-~~~DlVLIDTaG 264 (388)
T PRK12723 252 -S-KDFDLVLVDTIG 264 (388)
T ss_pred -h-CCCCEEEEcCCC
Confidence 3 345688999884
No 365
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.23 E-value=0.0062 Score=55.73 Aligned_cols=62 Identities=26% Similarity=0.354 Sum_probs=43.5
Q ss_pred HHHHHHHh--cCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHH
Q 037625 145 EQVWRCLA--EESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQED 207 (467)
Q Consensus 145 ~~l~~~L~--~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 207 (467)
.+|+..+. .++..+|+|+|.||+|||||.-.+...+ ...++--.++-|+-|..++--.++.+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCcccccc
Confidence 45555554 3567799999999999999999988887 33455445666666666655555443
No 366
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.22 E-value=0.016 Score=59.84 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+...++|+|+.|+|||||++.+..-.
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998665
No 367
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.22 E-value=0.043 Score=47.45 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=22.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+.|.+.|.+|+||||+|++++..+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 578899999999999999999877
No 368
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=96.21 E-value=0.02 Score=54.23 Aligned_cols=88 Identities=20% Similarity=0.263 Sum_probs=51.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeC-CCCCHHHHHHHHHHHhcCCC-----CCCCCcC-----
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVS-KDLRLEKIQEDIGKKIGLVG-----DSWKSRS----- 223 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~-----~~~~~~~----- 223 (467)
....++|.|+.|+|||||.+.+.... . .+...+.-+. +..+..++.......-+... ...+...
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~---~--~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGT---T--ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC---C--CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 44678999999999999999988765 1 2333333333 44566666665554432210 0001111
Q ss_pred ----HHHHHHHHHHHhcCCcEEEEeCCCCC
Q 037625 224 ----VEEKALDIFRSLREKRIVLLLDDIWE 249 (467)
Q Consensus 224 ----~~~~~~~l~~~l~~k~~LlVlDdv~~ 249 (467)
.-..++.++. +++.+|+++||+..
T Consensus 143 ~~~~a~~~AEyfr~--~g~~Vll~~Dsltr 170 (326)
T cd01136 143 AAYTATAIAEYFRD--QGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHH--cCCCeEEEeccchH
Confidence 1122233332 58899999999853
No 369
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.21 E-value=0.25 Score=47.96 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=35.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEe-CCCCCHHHHHHHHHHHhcC
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVV-SKDLRLEKIQEDIGKKIGL 214 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~ 214 (467)
..+|..+|.-|.||||.+..+++.+.+ ... .+.-+++ ...+..-+-++.+..+.+.
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk--~~~-kvllVaaD~~RpAA~eQL~~La~q~~v 156 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKK--KGK-KVLLVAADTYRPAAIEQLKQLAEQVGV 156 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHH--cCC-ceEEEecccCChHHHHHHHHHHHHcCC
Confidence 568999999999999999999988822 222 2222222 2223344455666666654
No 370
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.20 E-value=0.013 Score=51.55 Aligned_cols=25 Identities=36% Similarity=0.593 Sum_probs=22.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
...+++|.|+.|+|||||++.++..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999864
No 371
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.20 E-value=0.0071 Score=49.25 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=22.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+-|.|+|-+|+|||||+..++...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 4568999999999999999999765
No 372
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.20 E-value=0.0044 Score=53.43 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=23.0
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...|.|+|++|+||||+|+.++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999986
No 373
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.19 E-value=0.031 Score=47.85 Aligned_cols=80 Identities=20% Similarity=0.321 Sum_probs=45.5
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcC
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLRE 237 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 237 (467)
++.|.|.+|+|||++|.++.... ...++|+.-....+. ++...|..........+... +....+.+.+..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~------~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~---E~~~~l~~~l~~ 70 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL------GGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTI---ETPRDLVSALKE 70 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc------CCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEe---ecHHHHHHHHHh
Confidence 36899999999999999987642 235677766665544 34444444222222222222 222233333321
Q ss_pred --CcEEEEeCCC
Q 037625 238 --KRIVLLLDDI 247 (467)
Q Consensus 238 --k~~LlVlDdv 247 (467)
+.-.+++|.+
T Consensus 71 ~~~~~~VLIDcl 82 (169)
T cd00544 71 LDPGDVVLIDCL 82 (169)
T ss_pred cCCCCEEEEEcH
Confidence 2347899987
No 374
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.19 E-value=0.0034 Score=54.77 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=21.2
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+|.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999876
No 375
>PRK08149 ATP synthase SpaL; Validated
Probab=96.18 E-value=0.027 Score=55.36 Aligned_cols=90 Identities=18% Similarity=0.282 Sum_probs=52.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeC-CCCCHHHHHHHHHHHhcCCC-----CCCCCcCHH---
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVS-KDLRLEKIQEDIGKKIGLVG-----DSWKSRSVE--- 225 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~--- 225 (467)
+...++|.|++|+|||||+..++... ..+.+++..+. +..+..++............ ...+.....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 44589999999999999999988754 22343444443 44466666666665432210 000111111
Q ss_pred --HHHHHHHHHh--cCCcEEEEeCCCCC
Q 037625 226 --EKALDIFRSL--REKRIVLLLDDIWE 249 (467)
Q Consensus 226 --~~~~~l~~~l--~~k~~LlVlDdv~~ 249 (467)
.....+.+++ +++.+||++||+..
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 1122233333 58999999999953
No 376
>PRK06217 hypothetical protein; Validated
Probab=96.18 E-value=0.0087 Score=52.19 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=21.5
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.|.|.|.+|+||||+|+.+....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999887
No 377
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.18 E-value=0.019 Score=54.51 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|+|||||++.++.-.
T Consensus 18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 18 EGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998765
No 378
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.17 E-value=0.029 Score=51.67 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|+|||||++.++...
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998765
No 379
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.17 E-value=0.012 Score=51.16 Aligned_cols=23 Identities=35% Similarity=0.738 Sum_probs=21.4
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+|+|.|.+|+||||||+.+...+
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999887
No 380
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.17 E-value=0.0097 Score=51.76 Aligned_cols=25 Identities=36% Similarity=0.504 Sum_probs=23.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+|+|-||-|+||||||+.++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4689999999999999999999988
No 381
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.016 Score=53.23 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=23.0
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...++|||++|.|||-+|+.|+...
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~m 190 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATM 190 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhc
Confidence 4578999999999999999999987
No 382
>PRK00625 shikimate kinase; Provisional
Probab=96.17 E-value=0.0042 Score=53.40 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=21.3
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.|.|+|++|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999886
No 383
>PRK15453 phosphoribulokinase; Provisional
Probab=96.17 E-value=0.031 Score=51.40 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+..+|+|.|.+|+||||+++.+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998876
No 384
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.16 E-value=0.022 Score=56.05 Aligned_cols=90 Identities=18% Similarity=0.280 Sum_probs=52.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeC-CCCCHHHHHHHHHHHhcCCCC----CCCCcCHH----
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVS-KDLRLEKIQEDIGKKIGLVGD----SWKSRSVE---- 225 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~---- 225 (467)
....++|.|..|+|||||++.+++.. ..+.+++.-+. +...+.++..+.+..-+.... .....+..
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 45689999999999999999998765 22344555454 444555665555443221100 00111111
Q ss_pred --HHHHHHHHHh--cCCcEEEEeCCCCC
Q 037625 226 --EKALDIFRSL--REKRIVLLLDDIWE 249 (467)
Q Consensus 226 --~~~~~l~~~l--~~k~~LlVlDdv~~ 249 (467)
.....+.+++ +++.+|+++||+..
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 1111233333 58999999999953
No 385
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.16 E-value=0.0065 Score=56.22 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=19.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+.|.|+|.+|+||||+|+.+...+
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 578999999999999999999987
No 386
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.16 E-value=0.021 Score=55.99 Aligned_cols=47 Identities=23% Similarity=0.236 Sum_probs=36.5
Q ss_pred CCccccchHHHHHHHHHHh-------c---C--------CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 134 ERTVVGLQSQLEQVWRCLA-------E---E--------SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~-------~---~--------~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...++|.+..++.+...+. . . ....+.++|++|+|||+||+.++...
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 3557999999888876552 1 1 12469999999999999999999776
No 387
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.16 E-value=0.027 Score=57.15 Aligned_cols=98 Identities=16% Similarity=0.149 Sum_probs=60.4
Q ss_pred HHHHHHHhcC--CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC----
Q 037625 145 EQVWRCLAEE--SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDS---- 218 (467)
Q Consensus 145 ~~l~~~L~~~--~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---- 218 (467)
..|-+.|..+ ...++.|.|++|+|||||+.+++.... ..-..++|++...+ ..++.... ..++.....
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eEs--~~~i~~~~-~~lg~~~~~~~~~ 323 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEES--RAQLLRNA-YSWGIDFEEMEQQ 323 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeCC--HHHHHHHH-HHcCCChHHHhhC
Confidence 4455555433 456899999999999999999888762 33456677665443 44444443 444432110
Q ss_pred ---------CCCcCHHHHHHHHHHHhcC-CcEEEEeCCCC
Q 037625 219 ---------WKSRSVEEKALDIFRSLRE-KRIVLLLDDIW 248 (467)
Q Consensus 219 ---------~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 248 (467)
......++....+.+.+.. +.-++|+|.+.
T Consensus 324 g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 324 GLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred CcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 1122346666777777644 56688999874
No 388
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.15 E-value=0.025 Score=59.54 Aligned_cols=86 Identities=21% Similarity=0.228 Sum_probs=57.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC---CCCcCHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDS---WKSRSVEEKALDI 231 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 231 (467)
..+++-|+|++|+|||||+.+++... ...-..++|++....++. ..++.++...+. ....+.++....+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a---~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANA---QAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 45688999999999999998876654 223356788887776663 256666654321 1233445555555
Q ss_pred HHHhc-CCcEEEEeCCCC
Q 037625 232 FRSLR-EKRIVLLLDDIW 248 (467)
Q Consensus 232 ~~~l~-~k~~LlVlDdv~ 248 (467)
...++ ++.-|||+|.+.
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 55554 467799999974
No 389
>PRK05439 pantothenate kinase; Provisional
Probab=96.14 E-value=0.046 Score=51.50 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..-+|+|.|.+|+||||+|+.+...+
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999988865
No 390
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.14 E-value=0.043 Score=51.17 Aligned_cols=53 Identities=19% Similarity=0.152 Sum_probs=37.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKK 211 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 211 (467)
...++.|.|++|+||||++.+++.... ..+-..++|++... ...++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 345889999999999999999887752 22245688887765 345555555444
No 391
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.14 E-value=0.028 Score=49.89 Aligned_cols=26 Identities=23% Similarity=0.505 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|.|||||++.++...
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 45689999999999999999998865
No 392
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.14 E-value=0.0049 Score=53.32 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=22.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.++|.+.|++|+||||+|+.+....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998875
No 393
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.13 E-value=0.04 Score=62.61 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=22.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+-|.++|++|+|||.||++++.+.
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhc
Confidence 4568899999999999999999986
No 394
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.12 E-value=0.013 Score=57.46 Aligned_cols=91 Identities=23% Similarity=0.294 Sum_probs=51.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CCCCcCHHH---
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGD-----SWKSRSVEE--- 226 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~--- 226 (467)
....++|.|..|+|||||++.++... .....++...-.+...+.++....+..-+.... ..+......
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~----~~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT----DADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC----CCCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 44589999999999999999888765 122233333334455566666655443221110 001111111
Q ss_pred --HHHHHHHHh--cCCcEEEEeCCCCC
Q 037625 227 --KALDIFRSL--REKRIVLLLDDIWE 249 (467)
Q Consensus 227 --~~~~l~~~l--~~k~~LlVlDdv~~ 249 (467)
....+.+++ +++.+||++||+..
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 112233333 57899999999853
No 395
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.11 E-value=0.0047 Score=53.63 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+++|.|++|+|||||++.++...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998876
No 396
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.10 E-value=0.05 Score=52.41 Aligned_cols=100 Identities=24% Similarity=0.243 Sum_probs=53.9
Q ss_pred HHHHHHHHhcC----CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHhcCCCCC
Q 037625 144 LEQVWRCLAEE----SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-LRLEKIQEDIGKKIGLVGDS 218 (467)
Q Consensus 144 ~~~l~~~L~~~----~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~ 218 (467)
...+..++.++ +.++|.++||.|+||||-...++... .....-..+..++.... ....+-++..++-++.+..
T Consensus 187 l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~- 264 (407)
T COG1419 187 LRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE- 264 (407)
T ss_pred HHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE-
Confidence 34444444443 47899999999999975544444444 11233345666665433 2445555666666665432
Q ss_pred CCCcCHHHHHHHHHHHhcCCcEEEEeCCCC
Q 037625 219 WKSRSVEEKALDIFRSLREKRIVLLLDDIW 248 (467)
Q Consensus 219 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 248 (467)
...+..++...+.. +++. =+|.+|-+.
T Consensus 265 -vv~~~~el~~ai~~-l~~~-d~ILVDTaG 291 (407)
T COG1419 265 -VVYSPKELAEAIEA-LRDC-DVILVDTAG 291 (407)
T ss_pred -EecCHHHHHHHHHH-hhcC-CEEEEeCCC
Confidence 23344444443332 3333 355567663
No 397
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.10 E-value=0.004 Score=55.09 Aligned_cols=23 Identities=43% Similarity=0.661 Sum_probs=21.0
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+|+|.|++|+|||||++.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 398
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.10 E-value=0.033 Score=53.52 Aligned_cols=89 Identities=19% Similarity=0.108 Sum_probs=52.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFR 233 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 233 (467)
+.++++|+|+.|+||||++..++... . ..-..+.+++..... ...+-++..+..++.+.. ...+..++...+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l-~--~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~ 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL-L--KQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQY 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-H--HcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHH
Confidence 35789999999999999999988766 2 122356666654322 234455556665554321 22344555444433
Q ss_pred Hh-cCCcEEEEeCCCC
Q 037625 234 SL-REKRIVLLLDDIW 248 (467)
Q Consensus 234 ~l-~~k~~LlVlDdv~ 248 (467)
.- .+..=+|++|-.-
T Consensus 280 l~~~~~~D~VLIDTAG 295 (407)
T PRK12726 280 MTYVNCVDHILIDTVG 295 (407)
T ss_pred HHhcCCCCEEEEECCC
Confidence 22 1345678888874
No 399
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.10 E-value=0.0079 Score=57.38 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=37.8
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++|.+..++.+.-.+.+.+..-+.+.|++|+||||+|+.+..-+
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 5679999999888766654445568999999999999999997765
No 400
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=96.09 E-value=0.02 Score=61.21 Aligned_cols=178 Identities=19% Similarity=0.229 Sum_probs=85.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhccc--CC-----------CCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCC
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFL--ES-----------PTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKS 221 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~--~~-----------~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 221 (467)
+.+++.|+|+.+.||||+.+.+.-... .. -..|+. ++..++...+...-+.
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~-i~~~ig~~~si~~~lS--------------- 389 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKE-IFADIGDEQSIEQSLS--------------- 389 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccce-EEEecCCccchhhchh---------------
Confidence 457899999999999999998754310 00 011222 2223332222221111
Q ss_pred cCHHHHHHHHHHHhc--CCcEEEEeCCCCC---hhhhhhh----ccCCCCCCCCCceEEEecCChhhhhhcCCCcccccC
Q 037625 222 RSVEEKALDIFRSLR--EKRIVLLLDDIWE---RVDLTKV----GVPLSGPKNTTSKVVFTTRFIGVCGSMEADRKFLVA 292 (467)
Q Consensus 222 ~~~~~~~~~l~~~l~--~k~~LlVlDdv~~---~~~~~~~----~~~l~~~~~~~s~iiiTtR~~~~~~~~~~~~~~~l~ 292 (467)
+.......+...+. +.+.|+++|++.. ..+-..+ ...+ ...|+.+|+||....+.........+.-.
T Consensus 390 -tfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l---~~~~~~vIitTH~~el~~~~~~~~~v~~~ 465 (782)
T PRK00409 390 -TFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYL---RKRGAKIIATTHYKELKALMYNREGVENA 465 (782)
T ss_pred -HHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHH---HHCCCEEEEECChHHHHHHHhcCCCeEEE
Confidence 11111222222222 4778999999863 2222222 2222 23478999999998776543222111100
Q ss_pred C--CCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHHHHhccCCCHHHHHHHHHHHHh
Q 037625 293 C--LSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIGRAMAYRKKAEQWRRAIEELRR 361 (467)
Q Consensus 293 ~--L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~~~~~~~~~~l~~l~~ 361 (467)
. ++.+...-.+.-..+.. . ...|-.|++++ |+|-.+..-|..+... ....++..++.|..
T Consensus 466 ~~~~d~~~l~~~Ykl~~G~~---g----~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~~l~~ 527 (782)
T PRK00409 466 SVEFDEETLRPTYRLLIGIP---G----KSNAFEIAKRL-GLPENIIEEAKKLIGE-DKEKLNELIASLEE 527 (782)
T ss_pred EEEEecCcCcEEEEEeeCCC---C----CcHHHHHHHHh-CcCHHHHHHHHHHHhh-hhhHHHHHHHHHHH
Confidence 0 11111000011011111 1 24466777776 7887777776666542 33355555555544
No 401
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.09 E-value=0.0084 Score=57.38 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=40.8
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++|.++.+..|...+.++...-|.|.|+.|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4579999999999998888877888899999999999999997765
No 402
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.07 E-value=0.0094 Score=56.98 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=39.6
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++|.+..+..|.-.+.++...-+.|.|++|+|||||++.+..-+
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 4579999999898887777767778899999999999999998765
No 403
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.07 E-value=0.018 Score=54.23 Aligned_cols=87 Identities=18% Similarity=0.213 Sum_probs=52.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCC---CCcCHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSW---KSRSVEEKALDI 231 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 231 (467)
..+++-|+|+.|+||||||..+.... .......+|++.....+.. .+..++...+.. .+.+.++.....
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHH
Confidence 45689999999999999999988776 2335678899887776543 334444332211 233455555555
Q ss_pred HHHhcC-CcEEEEeCCCCC
Q 037625 232 FRSLRE-KRIVLLLDDIWE 249 (467)
Q Consensus 232 ~~~l~~-k~~LlVlDdv~~ 249 (467)
.+.++. ..-++|+|.|-.
T Consensus 124 e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT
T ss_pred HHHhhcccccEEEEecCcc
Confidence 555543 445889998843
No 404
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.06 E-value=0.021 Score=55.75 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=21.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++.++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998654
No 405
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.05 E-value=0.026 Score=51.81 Aligned_cols=102 Identities=15% Similarity=0.162 Sum_probs=59.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccC-CCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCCCC-----CCCCcCHH--
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLE-SPTNFDCVIWVVVSK-DLRLEKIQEDIGKKIGLVGD-----SWKSRSVE-- 225 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~-~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~-- 225 (467)
.-..++|.|..|+|||+|+..+.++..- .++.-+.++++-+.+ ..+..++...+...-.+... ..+.....
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 3457899999999999999998887510 122346677777765 44677777777654222110 00111111
Q ss_pred ---HHHHHHHHHh---cCCcEEEEeCCCCCh-hhhhhh
Q 037625 226 ---EKALDIFRSL---REKRIVLLLDDIWER-VDLTKV 256 (467)
Q Consensus 226 ---~~~~~l~~~l---~~k~~LlVlDdv~~~-~~~~~~ 256 (467)
...-.+.+++ .++.+|+++||+... ....++
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~A~rEi 185 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTNYAEALREI 185 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhHHHHHHHHH
Confidence 1112233443 378999999998543 334444
No 406
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.04 E-value=0.0014 Score=57.30 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=18.6
Q ss_pred EEEEEccCCCcHHHHHHHHHh
Q 037625 158 IIGLYGMGGVGKTTLLTHINN 178 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~ 178 (467)
++.|+|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999873
No 407
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.03 E-value=0.0095 Score=52.09 Aligned_cols=105 Identities=16% Similarity=0.122 Sum_probs=52.8
Q ss_pred HHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcC
Q 037625 144 LEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRS 223 (467)
Q Consensus 144 ~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 223 (467)
...++...... ...+.|.|+.|+|||||++.+.... ... ...+.+ ........-.... .++...........
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll~aL~~~i---~~~-~~~i~i--ed~~E~~~~~~~~-~~~~~~~~~~~~~~ 85 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLLNALLAFI---PPD-ERIITI--EDTAELQLPHPNW-VRLVTRPGNVEGSG 85 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHHHHHHhhc---CCC-CCEEEE--CCccccCCCCCCE-EEEEEecCCCCCCC
Confidence 33334433333 4689999999999999999998766 211 122222 1111000000000 00000000000111
Q ss_pred HHHHHHHHHHHhcCCcEEEEeCCCCChhhhhhh
Q 037625 224 VEEKALDIFRSLREKRIVLLLDDIWERVDLTKV 256 (467)
Q Consensus 224 ~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~ 256 (467)
.....+.+...++..+=.++++++.+.+.+..+
T Consensus 86 ~~~~~~~l~~~lR~~pd~i~igEir~~ea~~~~ 118 (186)
T cd01130 86 EVTMADLLRSALRMRPDRIIVGEVRGGEALDLL 118 (186)
T ss_pred ccCHHHHHHHHhccCCCEEEEEccCcHHHHHHH
Confidence 223444555667777888999999877665543
No 408
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.03 E-value=0.0047 Score=52.82 Aligned_cols=22 Identities=45% Similarity=0.609 Sum_probs=19.7
Q ss_pred EEEEccCCCcHHHHHHHHHhcc
Q 037625 159 IGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 159 i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
|.|+|++|+|||||++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999887
No 409
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.98 E-value=0.0073 Score=52.78 Aligned_cols=44 Identities=25% Similarity=0.206 Sum_probs=30.7
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHH
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQE 206 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 206 (467)
++.|.|++|+|||+|+.+++.... ..-..++|++.... ..++..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~~--~~~~~~ 44 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEES--PEELIE 44 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCCC--HHHHHH
Confidence 367999999999999999877662 23355778776543 444443
No 410
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.98 E-value=0.0051 Score=51.66 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.6
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
++.|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998865
No 411
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.98 E-value=0.0051 Score=53.48 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=21.2
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999876
No 412
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.97 E-value=0.031 Score=47.95 Aligned_cols=83 Identities=12% Similarity=0.127 Sum_probs=44.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcC-HHHHHHHHHHHh
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRS-VEEKALDIFRSL 235 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~~~l~~~l 235 (467)
.++.|.|.+|+||||+|..+.... .. ..+|+.-... ...+....+......-+..+.... ...+...+....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~---~~---~~~~iat~~~-~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~ 74 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS---GL---QVLYIATAQP-FDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADA 74 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc---CC---CcEeCcCCCC-ChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhc
Confidence 368999999999999999998765 11 2334443333 333455555443322222222111 112333333323
Q ss_pred cCCcEEEEeCCC
Q 037625 236 REKRIVLLLDDI 247 (467)
Q Consensus 236 ~~k~~LlVlDdv 247 (467)
.+ .-++++|.+
T Consensus 75 ~~-~~~VlID~L 85 (170)
T PRK05800 75 AP-GRCVLVDCL 85 (170)
T ss_pred CC-CCEEEehhH
Confidence 33 337888987
No 413
>PHA02244 ATPase-like protein
Probab=95.97 E-value=0.011 Score=56.60 Aligned_cols=44 Identities=16% Similarity=0.232 Sum_probs=30.6
Q ss_pred CccccchHHH----HHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 135 RTVVGLQSQL----EQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 135 ~~~vGr~~~~----~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++|..... ..+..++..+ ..|.|+|++|+|||+||+.+++..
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~~--~PVLL~GppGtGKTtLA~aLA~~l 143 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNAN--IPVFLKGGAGSGKNHIAEQIAEAL 143 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHh
Confidence 3456655444 3444444333 357889999999999999999876
No 414
>PTZ00494 tuzin-like protein; Provisional
Probab=95.96 E-value=0.1 Score=50.84 Aligned_cols=166 Identities=13% Similarity=0.082 Sum_probs=98.2
Q ss_pred CCCCccccchHHHHHHHHHHhc---CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHH
Q 037625 132 PTERTVVGLQSQLEQVWRCLAE---ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDI 208 (467)
Q Consensus 132 ~~~~~~vGr~~~~~~l~~~L~~---~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 208 (467)
.....++.|+.+-..+.+.|.+ ...+++++.|.-|+|||+|.+...... . -..+++++.... +-++.+
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE-~-----~paV~VDVRg~E---DtLrsV 438 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE-G-----VALVHVDVGGTE---DTLRSV 438 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc-C-----CCeEEEEecCCc---chHHHH
Confidence 3456789999998888888764 367899999999999999999887764 1 245677776553 456778
Q ss_pred HHHhcCCCCCCCCcCHHHHHHHHHH---HhcCCcEEEEeCCCCChhhhhhh---ccCCCCCCCCCceEEEecCChhhhh-
Q 037625 209 GKKIGLVGDSWKSRSVEEKALDIFR---SLREKRIVLLLDDIWERVDLTKV---GVPLSGPKNTTSKVVFTTRFIGVCG- 281 (467)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~l~~---~l~~k~~LlVlDdv~~~~~~~~~---~~~l~~~~~~~s~iiiTtR~~~~~~- 281 (467)
.+.++.+.-+.-.+-.+...+.... ...++.-+||+-==+ -.++..+ ...+ .....-|.|++----+.+..
T Consensus 439 VKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLRE-GssL~RVYnE~vaL-acDrRlCHvv~EVplESLT~~ 516 (664)
T PTZ00494 439 VRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLRE-GSDLGRVYGEVVSL-VSDCQACHIVLAVPMKALTPL 516 (664)
T ss_pred HHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEecc-CCcHHHHHHHHHHH-HccchhheeeeechHhhhchh
Confidence 8888865432222233333333332 234566666653211 1111111 0011 22334456665332222210
Q ss_pred --hcCCCcccccCCCCHHHHHHHHHHHhC
Q 037625 282 --SMEADRKFLVACLSEKDAWELFREKVG 308 (467)
Q Consensus 282 --~~~~~~~~~l~~L~~~e~~~lf~~~~~ 308 (467)
.+..-..|.+++|+.++|.++-.+.+.
T Consensus 517 n~~LPRLDFy~VPnFSr~QAf~YtqH~lD 545 (664)
T PTZ00494 517 NVSSRRLDFYCIPPFSRRQAFAYAEHTLD 545 (664)
T ss_pred hccCccceeEecCCcCHHHHHHHHhcccc
Confidence 112234678999999999999888653
No 415
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.95 E-value=0.02 Score=55.02 Aligned_cols=64 Identities=25% Similarity=0.258 Sum_probs=47.2
Q ss_pred ccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHH
Q 037625 136 TVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQED 207 (467)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 207 (467)
.++|++..+..+...+..+ +.+.+.|++|+|||+||+.++... . ...+.+.+.......++...
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l---~---~~~~~i~~t~~l~p~d~~G~ 88 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARAL---G---LPFVRIQCTPDLLPSDLLGT 88 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHh---C---CCeEEEecCCCCCHHHhcCc
Confidence 4789888888777776654 368899999999999999999987 3 23355666666666665443
No 416
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.95 E-value=0.0053 Score=51.25 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=21.2
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+|.|.|++|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 417
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.95 E-value=0.01 Score=52.78 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=22.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|+|++|+|||||++.+.--.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 44689999999999999999987654
No 418
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.94 E-value=0.015 Score=57.60 Aligned_cols=92 Identities=20% Similarity=0.298 Sum_probs=56.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCCCC----CCCCcCHH----
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK-DLRLEKIQEDIGKKIGLVGD----SWKSRSVE---- 225 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~----~~~~~~~~---- 225 (467)
.-..++|.|.+|+|||||+..+.++.. +.+-+.++++-+.. .....++...+...-..... .....+..
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~--~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS--KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 445799999999999999999988872 23566777776654 44566777766543221100 00111111
Q ss_pred --HHHHHHHHHh---cCCcEEEEeCCCC
Q 037625 226 --EKALDIFRSL---REKRIVLLLDDIW 248 (467)
Q Consensus 226 --~~~~~l~~~l---~~k~~LlVlDdv~ 248 (467)
.....+.+++ +++.+||++|++.
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccch
Confidence 1222234444 3789999999994
No 419
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.94 E-value=0.0063 Score=52.90 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
++++|+|+.|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 479999999999999999999865
No 420
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.94 E-value=0.011 Score=52.97 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.0
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.|.|.|++|+||||+|+.++...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998876
No 421
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.93 E-value=0.013 Score=51.68 Aligned_cols=42 Identities=33% Similarity=0.411 Sum_probs=29.5
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCH
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 201 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 201 (467)
.|+|+|-||+||||+|..++..+. ..+-..++-++...+.++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~--~~~~~~VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLL--SKGGYNVLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHH--hcCCceEEEEeCCCCCCh
Confidence 589999999999999999666662 222245566666655543
No 422
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.92 E-value=0.0064 Score=51.01 Aligned_cols=20 Identities=40% Similarity=0.650 Sum_probs=18.8
Q ss_pred EEEEEccCCCcHHHHHHHHH
Q 037625 158 IIGLYGMGGVGKTTLLTHIN 177 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~ 177 (467)
.|+|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 68999999999999999988
No 423
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.92 E-value=0.007 Score=49.96 Aligned_cols=23 Identities=48% Similarity=0.748 Sum_probs=20.8
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+++|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999875
No 424
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=95.91 E-value=0.022 Score=48.48 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=19.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
++..|+|+.|.|||++.+.+.-.
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~ 44 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLA 44 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999986443
No 425
>PRK13947 shikimate kinase; Provisional
Probab=95.91 E-value=0.0063 Score=52.40 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=21.5
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.|.|+|++|+||||+++.+++.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 426
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.91 E-value=0.0068 Score=50.16 Aligned_cols=39 Identities=18% Similarity=0.314 Sum_probs=26.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCC
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK 197 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 197 (467)
++|.|+|+.|+|||||++.+.+.+. +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 4799999999999999999999982 23344444444443
No 427
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.91 E-value=0.037 Score=54.67 Aligned_cols=91 Identities=23% Similarity=0.285 Sum_probs=52.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC----CCCcC-HH----
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDS----WKSRS-VE---- 225 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~-~~---- 225 (467)
+...++|.|+.|+|||||++.++... . .-..+++..-.+.....++...+...-+..... ....+ ..
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~-~---~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGT-Q---CDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-C---CCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 45689999999999999999998765 1 112444444445556666666665442211100 01111 11
Q ss_pred -HHHHHHHHHh--cCCcEEEEeCCCCC
Q 037625 226 -EKALDIFRSL--REKRIVLLLDDIWE 249 (467)
Q Consensus 226 -~~~~~l~~~l--~~k~~LlVlDdv~~ 249 (467)
.....+.+++ +++.+|+++|++..
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1112233333 47899999999954
No 428
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.90 E-value=0.02 Score=55.80 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 144 LEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 144 ~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+.+++.+.......+.|.|+||+|||+|.+.+.+..
T Consensus 10 ~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 10 FDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 4555566655666789999999999999999999887
No 429
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.89 E-value=0.0031 Score=55.91 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=19.8
Q ss_pred cEEEEEccCCCcHHHHHHHHH
Q 037625 157 GIIGLYGMGGVGKTTLLTHIN 177 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~ 177 (467)
+++.|+|+.|.|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999987
No 430
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.88 E-value=0.014 Score=55.09 Aligned_cols=46 Identities=22% Similarity=0.361 Sum_probs=41.2
Q ss_pred CccccchHHHHHHHHHHhc------CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 135 RTVVGLQSQLEQVWRCLAE------ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~------~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..|+|.++.++++++.+.. ...+++.+.||.|.|||||+..+.+-+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999863 356899999999999999999998887
No 431
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.88 E-value=0.025 Score=55.68 Aligned_cols=90 Identities=22% Similarity=0.326 Sum_probs=52.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCCCCC----CCCcCHHH---
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK-DLRLEKIQEDIGKKIGLVGDS----WKSRSVEE--- 226 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~--- 226 (467)
+...++|.|..|+|||||.+.+++.. ..+.+++.-+.. .....++....+..-+..... ....+...
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 45689999999999999999999875 224566666654 445666655544332211000 01111111
Q ss_pred ---HHHHHHHHh--cCCcEEEEeCCCCC
Q 037625 227 ---KALDIFRSL--REKRIVLLLDDIWE 249 (467)
Q Consensus 227 ---~~~~l~~~l--~~k~~LlVlDdv~~ 249 (467)
....+.+++ +++.+|+++|++..
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 111223333 58999999999953
No 432
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.88 E-value=0.014 Score=49.17 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 142 SQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 142 ~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+++|...+.+ +++++.|+.|+|||||+..+....
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 456777777754 689999999999999999998874
No 433
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.86 E-value=0.012 Score=54.62 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=35.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCC
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL 199 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~ 199 (467)
..+++.|+|.+|+|||+++.++.... ...+..++|++.....
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~~ 63 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEESP 63 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCCH
Confidence 56799999999999999999998877 3447889999887653
No 434
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=95.86 E-value=0.027 Score=52.06 Aligned_cols=68 Identities=24% Similarity=0.239 Sum_probs=42.6
Q ss_pred HHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCC-------CCeEEEEEeCCC-CCHHHHHHHHHHHhcCCC
Q 037625 147 VWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTN-------FDCVIWVVVSKD-LRLEKIQEDIGKKIGLVG 216 (467)
Q Consensus 147 l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~-------f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~ 216 (467)
|-+++..+ -++.|+|.+|+|||||+-..+=.....++. ...++++++... .++-+=++.+..+++++.
T Consensus 82 Id~~fr~g--~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsP 157 (402)
T COG3598 82 IDEFFRKG--YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSP 157 (402)
T ss_pred hhHHhhcC--eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCCh
Confidence 34444333 245678999999999998765443222233 346778877643 345555667778887654
No 435
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=95.86 E-value=0.037 Score=52.52 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=22.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+++|.|+.|.|||||.+.++...
T Consensus 33 Gei~gllGpNGaGKSTLl~~l~Gl~ 57 (306)
T PRK13537 33 GECFGLLGPNGAGKTTTLRMLLGLT 57 (306)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999998765
No 436
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.84 E-value=0.038 Score=49.01 Aligned_cols=119 Identities=16% Similarity=0.120 Sum_probs=57.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCC-CCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCC-CCcCHHHHHHHHHH
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLES-PTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSW-KSRSVEEKALDIFR 233 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 233 (467)
.+++.|.|+.|.||||+.+.++...... -+.| +.... .. -.+...|...++...... .......-..++..
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~-----vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~ 101 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQIGCF-----VPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAY 101 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCC-----cchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHH
Confidence 4789999999999999998876432000 0111 11100 00 012222222222211100 00111111112222
Q ss_pred Hh--cCCcEEEEeCCCCC---hhh----hhhhccCCCCCCCCCceEEEecCChhhhhhcC
Q 037625 234 SL--REKRIVLLLDDIWE---RVD----LTKVGVPLSGPKNTTSKVVFTTRFIGVCGSME 284 (467)
Q Consensus 234 ~l--~~k~~LlVlDdv~~---~~~----~~~~~~~l~~~~~~~s~iiiTtR~~~~~~~~~ 284 (467)
.+ ..++-|+++|+... ..+ ...+...+ ...++.+|++|.+..++....
T Consensus 102 il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l---~~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 102 ILDYADGDSLVLIDELGRGTSSADGFAISLAILECL---IKKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHH---HhcCCEEEEECChHHHHHHhh
Confidence 22 35688999999842 222 11222222 233789999999888866543
No 437
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.84 E-value=0.047 Score=51.73 Aligned_cols=26 Identities=31% Similarity=0.572 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|.|||||.+.+....
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl~ 52 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGYL 52 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998765
No 438
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.83 E-value=0.0061 Score=54.68 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=21.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHh
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINN 178 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~ 178 (467)
..+++.|.|+.|.||||+.+.+.-
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346889999999999999998876
No 439
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.80 E-value=0.0081 Score=48.05 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.3
Q ss_pred EEEEccCCCcHHHHHHHHHhcc
Q 037625 159 IGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 159 i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
|.|.|..|+|||||.+.++...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999999765
No 440
>PRK13949 shikimate kinase; Provisional
Probab=95.80 E-value=0.0088 Score=51.35 Aligned_cols=23 Identities=39% Similarity=0.416 Sum_probs=21.6
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.|.|+|++|+||||+++.+++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999987
No 441
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.80 E-value=0.0085 Score=53.32 Aligned_cols=26 Identities=31% Similarity=0.393 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+|+|+|++|+|||||++.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999999875
No 442
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=95.80 E-value=0.08 Score=52.17 Aligned_cols=91 Identities=21% Similarity=0.226 Sum_probs=52.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC----CCCcCH--HH--
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDS----WKSRSV--EE-- 226 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~--~~-- 226 (467)
....++|.|..|+|||||+..++... + ....++...-.+.....+.+...+..-+..... ....+. ..
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~-~---~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNA-K---ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC-C---CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence 44588999999999999999998875 1 122333333334466667766555543321100 011111 11
Q ss_pred --HHHHHHHHh--cCCcEEEEeCCCCC
Q 037625 227 --KALDIFRSL--REKRIVLLLDDIWE 249 (467)
Q Consensus 227 --~~~~l~~~l--~~k~~LlVlDdv~~ 249 (467)
....+.+++ +++++||++||+..
T Consensus 231 ~~~a~~iAEyfr~~G~~VLlilDslTr 257 (432)
T PRK06793 231 AKLATSIAEYFRDQGNNVLLMMDSVTR 257 (432)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecchHH
Confidence 112222333 47999999999964
No 443
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.80 E-value=0.0061 Score=52.03 Aligned_cols=22 Identities=27% Similarity=0.611 Sum_probs=20.0
Q ss_pred EEEEccCCCcHHHHHHHHHhcc
Q 037625 159 IGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 159 i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999876
No 444
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.80 E-value=0.029 Score=51.16 Aligned_cols=78 Identities=13% Similarity=-0.008 Sum_probs=42.3
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCC--CHHHHHHHHHHHh--cCCCCC--CCCcCHHHHHHHH
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL--RLEKIQEDIGKKI--GLVGDS--WKSRSVEEKALDI 231 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l--~~~~~~--~~~~~~~~~~~~l 231 (467)
+|+|.|.+|+||||+++.+.+.+ . ..-..+..++...-. +-...-..+.... +..-+. ....+.+.+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l-~--~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF-A--REGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-H--hcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH
Confidence 58999999999999999999877 2 111223444432221 2222222222221 111111 2455667777777
Q ss_pred HHHhcCC
Q 037625 232 FRSLREK 238 (467)
Q Consensus 232 ~~~l~~k 238 (467)
+.+.+++
T Consensus 78 ~~L~~g~ 84 (277)
T cd02029 78 RTYGETG 84 (277)
T ss_pred HHHHcCC
Confidence 7766653
No 445
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=95.78 E-value=0.037 Score=57.05 Aligned_cols=26 Identities=27% Similarity=0.560 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|+|+.|+|||||++.++...
T Consensus 26 ~Ge~~~liG~NGsGKSTLl~~l~Gl~ 51 (530)
T PRK15064 26 GGNRYGLIGANGCGKSTFMKILGGDL 51 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999765
No 446
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=95.77 E-value=0.039 Score=54.35 Aligned_cols=90 Identities=20% Similarity=0.254 Sum_probs=48.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeC-CCCCHHHHHHHHHHHhcCC-------CCCC---CCcC
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVS-KDLRLEKIQEDIGKKIGLV-------GDSW---KSRS 223 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~-------~~~~---~~~~ 223 (467)
+...++|.|+.|+|||||++.+.... ..+..+...+. +..+..++....+..-+.. ..+. ....
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~~-----~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~ 228 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRYT-----QADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIK 228 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhccc-----CCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHH
Confidence 45689999999999999999888754 12232222222 2334444443433332211 1000 0111
Q ss_pred HHHHHHHHHHHh--cCCcEEEEeCCCCC
Q 037625 224 VEEKALDIFRSL--REKRIVLLLDDIWE 249 (467)
Q Consensus 224 ~~~~~~~l~~~l--~~k~~LlVlDdv~~ 249 (467)
..+....+.+++ +++.+||++||+..
T Consensus 229 a~e~a~~iAEyfr~~g~~Vll~~Dsltr 256 (434)
T PRK07196 229 ATELCHAIATYYRDKGHDVLLLVDSLTR 256 (434)
T ss_pred HHHHHHHHHHHhhhccCCEEEeecchhH
Confidence 122222333333 57899999999853
No 447
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.77 E-value=0.009 Score=51.68 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+|.|.|++|+||||+|+.++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999887
No 448
>PRK14530 adenylate kinase; Provisional
Probab=95.76 E-value=0.0078 Score=54.03 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+.|+|.|++|+||||+++.++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 449
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.76 E-value=0.02 Score=50.47 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=21.8
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999887
No 450
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.75 E-value=0.013 Score=52.39 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=20.2
Q ss_pred EEEEccCCCcHHHHHHHHHhcc
Q 037625 159 IGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 159 i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
|.|.|++|+||||+|+.++...
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998865
No 451
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.75 E-value=0.011 Score=55.99 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=32.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHH
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQ 205 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 205 (467)
+++.+.|-||+||||+|...+-...+ .-..++-++.....++.+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~---~G~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALAR---RGKRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH---TTS-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhh---CCCCeeEeecCCCccHHHHh
Confidence 68999999999999999888776622 23446666666555555544
No 452
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.75 E-value=0.024 Score=57.55 Aligned_cols=133 Identities=20% Similarity=0.178 Sum_probs=70.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCC-----CCCeEEEEEeCC-----CCC------------HHHHHHHHHHHhc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPT-----NFDCVIWVVVSK-----DLR------------LEKIQEDIGKKIG 213 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~-----~f~~~~wv~~~~-----~~~------------~~~~~~~i~~~l~ 213 (467)
...|+|+|+.|+|||||.+.+........+ ..-.+.|+.-.. ..+ ...-.+..+..++
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 457999999999999999999665521111 111222332111 001 1344445555555
Q ss_pred CCCCCC----CCcCHHHHHHH-HHHHhcCCcEEEEeCCCCCh---hhhhhhccCCCCCCCCCceEEEecCChhhhhhcCC
Q 037625 214 LVGDSW----KSRSVEEKALD-IFRSLREKRIVLLLDDIWER---VDLTKVGVPLSGPKNTTSKVVFTTRFIGVCGSMEA 285 (467)
Q Consensus 214 ~~~~~~----~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~---~~~~~~~~~l~~~~~~~s~iiiTtR~~~~~~~~~~ 285 (467)
.+++.. ...+.-+.... +...+-.++-+||||+-.+. +..+.+...+ ......||+.|.+........
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL---~~f~Gtvl~VSHDr~Fl~~va- 503 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEAL---LDFEGTVLLVSHDRYFLDRVA- 503 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHH---HhCCCeEEEEeCCHHHHHhhc-
Confidence 544321 12233333333 33445678899999987643 2233333333 223456888888887765543
Q ss_pred CcccccC
Q 037625 286 DRKFLVA 292 (467)
Q Consensus 286 ~~~~~l~ 292 (467)
...+.+.
T Consensus 504 ~~i~~~~ 510 (530)
T COG0488 504 TRIWLVE 510 (530)
T ss_pred ceEEEEc
Confidence 3344443
No 453
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.74 E-value=0.048 Score=43.60 Aligned_cols=46 Identities=20% Similarity=0.337 Sum_probs=34.3
Q ss_pred CccccchHHHHHHHHHHh----c---CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 135 RTVVGLQSQLEQVWRCLA----E---ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~----~---~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++|..-..+.+.+.+. + .+.-|++.+|.+|+|||.+++.+++.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 457887766666666554 2 244578999999999999998888875
No 454
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.74 E-value=0.009 Score=51.06 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++++|+|+.|+|||||++.+...+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45689999999999999999999887
No 455
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.73 E-value=0.034 Score=57.63 Aligned_cols=120 Identities=16% Similarity=0.193 Sum_probs=61.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC-CCC--CC-cCHHHHHHHH
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVG-DSW--KS-RSVEEKALDI 231 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-~~~--~~-~~~~~~~~~l 231 (467)
.++..|.|.+|+||||++..+...+.+....-...+.+..........+...+...+.... ... .. ......++++
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrl 246 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRL 246 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHH
Confidence 4689999999999999998887765221111224555555544444445444433221110 000 00 0112222333
Q ss_pred HHHhc---------CCc---EEEEeCCCC--ChhhhhhhccCCCCCCCCCceEEEecCChhh
Q 037625 232 FRSLR---------EKR---IVLLLDDIW--ERVDLTKVGVPLSGPKNTTSKVVFTTRFIGV 279 (467)
Q Consensus 232 ~~~l~---------~k~---~LlVlDdv~--~~~~~~~~~~~l~~~~~~~s~iiiTtR~~~~ 279 (467)
..... +.+ =++|+|+.. +......+...+ .+++++|+-.-...+
T Consensus 247 Lg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al----~~~~rlIlvGD~~QL 304 (615)
T PRK10875 247 LGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDAL----PPHARVIFLGDRDQL 304 (615)
T ss_pred hCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhc----ccCCEEEEecchhhc
Confidence 32211 112 289999974 333344443333 457888877665444
No 456
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.71 E-value=0.073 Score=53.69 Aligned_cols=26 Identities=35% Similarity=0.585 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|+|||||++.++...
T Consensus 49 ~GEivgIiGpNGSGKSTLLkiLaGLl 74 (549)
T PRK13545 49 EGEIVGIIGLNGSGKSTLSNLIAGVT 74 (549)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998865
No 457
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.71 E-value=0.027 Score=55.28 Aligned_cols=89 Identities=24% Similarity=0.320 Sum_probs=49.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCCC-----CCCCCcCHH---
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK-DLRLEKIQEDIGKKIGLVG-----DSWKSRSVE--- 225 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~--- 225 (467)
....++|.|..|+|||||++.+.+.. ..+..++..+.. ...+.++.......-.... ...+.....
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~-----~~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~ 210 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYT-----EADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLR 210 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCC-----CCCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHH
Confidence 44579999999999999999888765 123444444443 3445555555543321110 000111111
Q ss_pred --HHHHHHHHHh--cCCcEEEEeCCCC
Q 037625 226 --EKALDIFRSL--REKRIVLLLDDIW 248 (467)
Q Consensus 226 --~~~~~l~~~l--~~k~~LlVlDdv~ 248 (467)
.....+.+++ +++.+|+++||+.
T Consensus 211 a~~~a~tiAEyfr~~G~~Vll~~Dslt 237 (411)
T TIGR03496 211 AAFYATAIAEYFRDQGKDVLLLMDSLT 237 (411)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeChH
Confidence 1111223333 5889999999985
No 458
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.70 E-value=0.01 Score=51.79 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+.++|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35689999999999999999998764
No 459
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.69 E-value=0.027 Score=51.60 Aligned_cols=101 Identities=14% Similarity=0.156 Sum_probs=58.0
Q ss_pred CccccchHHHHHHHHHHh----cC---CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHH
Q 037625 135 RTVVGLQSQLEQVWRCLA----EE---SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQED 207 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~----~~---~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 207 (467)
..++|..-..+.++..+. ++ +.-+++.+|.+|+||.-.++.++++.-+....-+ ....
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~---------------~V~~ 146 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSP---------------FVHH 146 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccch---------------hHHH
Confidence 456777766666666664 32 3447899999999999999999988722221111 1122
Q ss_pred HHHHhcCCCCCCCCcCHHHHHHHHHHHhc-CCcEEEEeCCCCCh
Q 037625 208 IGKKIGLVGDSWKSRSVEEKALDIFRSLR-EKRIVLLLDDIWER 250 (467)
Q Consensus 208 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~ 250 (467)
.......+.+.....-.+++...++..++ -++.|+|+|+++..
T Consensus 147 fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 147 FVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred hhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 22222222111111122334444444443 38999999999853
No 460
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.69 E-value=0.011 Score=50.43 Aligned_cols=25 Identities=36% Similarity=0.426 Sum_probs=22.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+++|.||+|+|||||++.++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578999999999999999999864
No 461
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.67 E-value=0.065 Score=50.97 Aligned_cols=26 Identities=35% Similarity=0.577 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+..+++++|++|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999999887
No 462
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.67 E-value=0.025 Score=54.65 Aligned_cols=104 Identities=21% Similarity=0.321 Sum_probs=54.0
Q ss_pred HHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHH
Q 037625 147 VWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEE 226 (467)
Q Consensus 147 l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 226 (467)
+.+.+.. ....|.|+|+.|+||||+++.+..........-..++. +.++... .+..+..............+...
T Consensus 126 ~~~~~~~-~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt--~EdpiE~--~~~~~~~~~~~v~Q~~v~~~~~~ 200 (358)
T TIGR02524 126 IIDAIAP-QEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILT--YEAPIEF--VYDEIETISASVCQSEIPRHLNN 200 (358)
T ss_pred HHHHHhc-cCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEE--eCCCceE--eccccccccceeeeeeccccccC
Confidence 3444433 45799999999999999999998776111111112222 2222111 00111000000000000111123
Q ss_pred HHHHHHHHhcCCcEEEEeCCCCChhhhhh
Q 037625 227 KALDIFRSLREKRIVLLLDDIWERVDLTK 255 (467)
Q Consensus 227 ~~~~l~~~l~~k~~LlVlDdv~~~~~~~~ 255 (467)
....++..|+..+-.+++.++.+.+....
T Consensus 201 ~~~~l~~aLR~~Pd~i~vGEiRd~et~~~ 229 (358)
T TIGR02524 201 FAAGVRNALRRKPHAILVGEARDAETISA 229 (358)
T ss_pred HHHHHHHHhccCCCEEeeeeeCCHHHHHH
Confidence 44556677888889999999987766543
No 463
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.66 E-value=0.012 Score=53.03 Aligned_cols=62 Identities=23% Similarity=0.318 Sum_probs=37.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEE-------eCCCCCHHH--HHHHHHHHhcCCCC
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVV-------VSKDLRLEK--IQEDIGKKIGLVGD 217 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~-------~~~~~~~~~--~~~~i~~~l~~~~~ 217 (467)
+...|.++||+|+||||..+.++.+. ..+.....++=++ ...+.++.+ -+++..++-++..+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl-~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPN 88 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHL-HAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPN 88 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHH-hhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCC
Confidence 34578899999999999999999887 3333333333221 112223333 34566777665443
No 464
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.66 E-value=0.0086 Score=50.46 Aligned_cols=22 Identities=41% Similarity=0.502 Sum_probs=20.5
Q ss_pred EEEEccCCCcHHHHHHHHHhcc
Q 037625 159 IGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 159 i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
|.|+|++|+||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998876
No 465
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.66 E-value=0.02 Score=54.33 Aligned_cols=47 Identities=26% Similarity=0.330 Sum_probs=35.3
Q ss_pred CCccccchHHHHH---HHHHHhcCC--CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 134 ERTVVGLQSQLEQ---VWRCLAEES--AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 134 ~~~~vGr~~~~~~---l~~~L~~~~--~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+||..+..+. +.+++.+++ .+.+.|.|++|+|||+||..+++.+
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eL 74 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKEL 74 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHC
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHh
Confidence 4679998776655 456666653 5789999999999999999999998
No 466
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.66 E-value=0.066 Score=55.76 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
....++|+|+.|.|||||++.++...
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998765
No 467
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.66 E-value=0.025 Score=52.97 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=40.5
Q ss_pred CCccccchHHHHH---HHHHHhcC--CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCC
Q 037625 134 ERTVVGLQSQLEQ---VWRCLAEE--SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNF 187 (467)
Q Consensus 134 ~~~~vGr~~~~~~---l~~~L~~~--~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f 187 (467)
.+.+||..+..+. +.+++.++ ..+.|.|.||+|+|||+||-.+.+.+ -..-+|
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eL-G~dvPF 95 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAREL-GEDVPF 95 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHh-CCCCCc
Confidence 4678998766554 56666655 45789999999999999999999988 333445
No 468
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.65 E-value=0.06 Score=49.23 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=35.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGK 210 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 210 (467)
..++.|.|++|+|||+++.+++.+.. ...-..++|++... +..++...+..
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~--~~~g~~vly~s~E~--~~~~~~~r~~~ 63 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIA--KKQGKPVLFFSLEM--SKEQLLQRLLA 63 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCceEEEeCCC--CHHHHHHHHHH
Confidence 45899999999999999999877662 22234677776554 44566665543
No 469
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.65 E-value=0.023 Score=50.01 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=22.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..|+|.|..|+||||+++.+.+.+
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999887
No 470
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.65 E-value=0.0093 Score=52.16 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+++|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997765
No 471
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.65 E-value=0.049 Score=54.47 Aligned_cols=58 Identities=22% Similarity=0.316 Sum_probs=35.0
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcC
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK-DLRLEKIQEDIGKKIGL 214 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~ 214 (467)
..+++++|+.|+||||++..++..... ......+..++... .....+-+....+..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~-~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGV 314 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVM-RHGASKVALLTTDSYRIGGHEQLRIYGKILGV 314 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHH-hcCCCeEEEEeCCccchhHHHHHHHHHHHhCC
Confidence 469999999999999999999876511 11112344444322 12333444555555554
No 472
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.64 E-value=0.011 Score=52.07 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+|.|.|.+|+||||+|+.++...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999875
No 473
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.64 E-value=0.013 Score=53.20 Aligned_cols=33 Identities=27% Similarity=0.294 Sum_probs=22.5
Q ss_pred EEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeC
Q 037625 161 LYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVS 196 (467)
Q Consensus 161 I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 196 (467)
|.||+|+||||+++.+.+.. ......++-+++.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~---~~~~~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL---ESNGRDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH---TTT-S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHH---HhccCCceEEEcc
Confidence 68999999999999999988 3333445555543
No 474
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.18 Score=51.35 Aligned_cols=151 Identities=15% Similarity=0.168 Sum_probs=81.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRS 234 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 234 (467)
..+-+.++|++|+|||-++++|++.. ..+ .+.+ +..++.... ...+...+...+.+.
T Consensus 217 ~prg~Ll~gppg~Gkt~l~~aVa~e~---~a~---~~~i------~~peli~k~-----------~gEte~~LR~~f~~a 273 (693)
T KOG0730|consen 217 PPRGLLLYGPPGTGKTFLVRAVANEY---GAF---LFLI------NGPELISKF-----------PGETESNLRKAFAEA 273 (693)
T ss_pred CCCCccccCCCCCChHHHHHHHHHHh---Cce---eEec------ccHHHHHhc-----------ccchHHHHHHHHHHH
Confidence 34568899999999999999999986 211 1111 112222221 223334455556666
Q ss_pred hcCC-cEEEEeCCCCChh---------h---hhhhccCCCCCCCCCce--EEEecCChhhh-hh---cCCCcccccCCCC
Q 037625 235 LREK-RIVLLLDDIWERV---------D---LTKVGVPLSGPKNTTSK--VVFTTRFIGVC-GS---MEADRKFLVACLS 295 (467)
Q Consensus 235 l~~k-~~LlVlDdv~~~~---------~---~~~~~~~l~~~~~~~s~--iiiTtR~~~~~-~~---~~~~~~~~l~~L~ 295 (467)
.+.+ +.++.+|+++... + ..++...+ ...++.++ +|-||+.+.-. .. -..+..+.+.-.+
T Consensus 274 ~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~-dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~ 352 (693)
T KOG0730|consen 274 LKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLL-DGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPG 352 (693)
T ss_pred hccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHH-hhCcCcCcEEEEEecCCccccChhhhcCCCcceeeecCCC
Confidence 6777 8999999985321 1 11111222 12222233 33355544331 11 1234556677777
Q ss_pred HHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCc
Q 037625 296 EKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLP 333 (467)
Q Consensus 296 ~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 333 (467)
..+-.++++..........+ .....|+..+.|.-
T Consensus 353 ~~~RldIl~~l~k~~~~~~~----~~l~~iA~~thGyv 386 (693)
T KOG0730|consen 353 SDGRLDILRVLTKKMNLLSD----VDLEDIAVSTHGYV 386 (693)
T ss_pred chhHHHHHHHHHHhcCCcch----hhHHHHHHHccchh
Confidence 77777777766654443322 33446666777765
No 475
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.63 E-value=0.042 Score=55.49 Aligned_cols=103 Identities=21% Similarity=0.270 Sum_probs=58.4
Q ss_pred ccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCC--CHHHHHHHHHHHhcCC
Q 037625 138 VGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL--RLEKIQEDIGKKIGLV 215 (467)
Q Consensus 138 vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~ 215 (467)
.|...+..+....+.....+++.|+|+.|+||||+...+.+.. ...-..+ +++.++. ....+ .+...
T Consensus 224 Lg~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~~l---~~~~~~i--iTiEDpvE~~~~~~-----~q~~v- 292 (486)
T TIGR02533 224 LGMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSRL---NTPERNI--LTVEDPVEYQIEGI-----GQIQV- 292 (486)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhcc---CCCCCcE--EEEcCCeeeecCCC-----ceEEE-
Confidence 4444443333333444556799999999999999999888776 1111122 3333321 11110 11111
Q ss_pred CCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCChhhhhh
Q 037625 216 GDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWERVDLTK 255 (467)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~ 255 (467)
...........++..|+..+=.|++.++.+.+....
T Consensus 293 ----~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd~eta~~ 328 (486)
T TIGR02533 293 ----NPKIGLTFAAGLRAILRQDPDIIMVGEIRDLETAQI 328 (486)
T ss_pred ----ccccCccHHHHHHHHHhcCCCEEEEeCCCCHHHHHH
Confidence 011112344667778888899999999988765544
No 476
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=95.63 E-value=0.049 Score=58.01 Aligned_cols=130 Identities=16% Similarity=0.168 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC--
Q 037625 141 QSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDS-- 218 (467)
Q Consensus 141 ~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-- 218 (467)
...+.+|.+.+.+. .++.|.|+.|+||||-.-+++.+. .......+-++=.+......+...++..++.....
T Consensus 52 ~~~~~~i~~ai~~~--~vvii~getGsGKTTqlP~~lle~---g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~V 126 (845)
T COG1643 52 TAVRDEILKAIEQN--QVVIIVGETGSGKTTQLPQFLLEE---GLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETV 126 (845)
T ss_pred HHHHHHHHHHHHhC--CEEEEeCCCCCChHHHHHHHHHhh---hcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCcee
Confidence 45677888888654 589999999999999998877765 12223344444334445567777888887653211
Q ss_pred ---------------CCCcCHHHHHHHHH-HHhcCCcEEEEeCCCCChhhhhhh-----ccCCCCCCCCCceEEEecCC
Q 037625 219 ---------------WKSRSVEEKALDIF-RSLREKRIVLLLDDIWERVDLTKV-----GVPLSGPKNTTSKVVFTTRF 276 (467)
Q Consensus 219 ---------------~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~~~~~~-----~~~l~~~~~~~s~iiiTtR~ 276 (467)
....+...+...+. +.+-.+=-.||+|++.+..--.++ ...+ ....+.-||||+|=.
T Consensus 127 GY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~-~~rr~DLKiIimSAT 204 (845)
T COG1643 127 GYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLL-ARRRDDLKLIIMSAT 204 (845)
T ss_pred eEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHH-hhcCCCceEEEEecc
Confidence 01112222222222 111223458999999864221111 1111 122234899998763
No 477
>PHA02774 E1; Provisional
Probab=95.63 E-value=0.036 Score=55.97 Aligned_cols=48 Identities=15% Similarity=0.140 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcC-CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEe
Q 037625 143 QLEQVWRCLAEE-SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVV 195 (467)
Q Consensus 143 ~~~~l~~~L~~~-~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 195 (467)
-+..|..++... +...+.|+||+|+|||.+|..+.+-+ . ...+.|++.
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L---~--G~vi~fvN~ 468 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFL---K--GKVISFVNS 468 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh---C--CCEEEEEEC
Confidence 445566666543 34689999999999999999999876 1 334556654
No 478
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.63 E-value=0.07 Score=54.68 Aligned_cols=98 Identities=17% Similarity=0.190 Sum_probs=58.9
Q ss_pred HHHHHHHhcC--CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC-----
Q 037625 145 EQVWRCLAEE--SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGD----- 217 (467)
Q Consensus 145 ~~l~~~L~~~--~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----- 217 (467)
..|-+.|..+ ...++.|.|++|+|||+|+.+++... ......++|++.... ..++.... ..++....
T Consensus 260 ~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~---~~~g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~ 333 (509)
T PRK09302 260 PDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAA---CRRGERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEK 333 (509)
T ss_pred HHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHH---HhCCCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhc
Confidence 3444444322 34688999999999999999988765 234567888877654 44444433 34432110
Q ss_pred --------CCCCcCHHHHHHHHHHHhcC-CcEEEEeCCCC
Q 037625 218 --------SWKSRSVEEKALDIFRSLRE-KRIVLLLDDIW 248 (467)
Q Consensus 218 --------~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 248 (467)
.......++....+.+.+.. +.-++|+|.+.
T Consensus 334 g~l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt 373 (509)
T PRK09302 334 GLLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLS 373 (509)
T ss_pred CCceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 00122345555666665543 55689999984
No 479
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.63 E-value=0.048 Score=53.87 Aligned_cols=90 Identities=20% Similarity=0.299 Sum_probs=51.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeC-CCCCHHHHHHHHHHHhcCCC-----CCCCCcCHHH--
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVS-KDLRLEKIQEDIGKKIGLVG-----DSWKSRSVEE-- 226 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~-- 226 (467)
....++|.|..|+|||||++.+.... ..+.+++..+. +..+..++...+...-+... ...+......
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~-----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~ 241 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFT-----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLR 241 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHH
Confidence 44579999999999999999888754 22344444343 33355666555554432210 0001111111
Q ss_pred ---HHHHHHHHh--cCCcEEEEeCCCCC
Q 037625 227 ---KALDIFRSL--REKRIVLLLDDIWE 249 (467)
Q Consensus 227 ---~~~~l~~~l--~~k~~LlVlDdv~~ 249 (467)
....+.+++ +++.+||++||+..
T Consensus 242 a~~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 242 AAMYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecchhH
Confidence 112233333 58999999999954
No 480
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=95.62 E-value=0.024 Score=56.28 Aligned_cols=88 Identities=16% Similarity=0.206 Sum_probs=50.9
Q ss_pred CCcEEEEEccCCCcHHHHHH-HHHhcccCCCCCCCeE-EEEEeC-CCCCHHHHHHHHHHHhcCCCC-----CCCCcCH--
Q 037625 155 SAGIIGLYGMGGVGKTTLLT-HINNKFLESPTNFDCV-IWVVVS-KDLRLEKIQEDIGKKIGLVGD-----SWKSRSV-- 224 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~-~v~~~~~~~~~~f~~~-~wv~~~-~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~-- 224 (467)
.-..++|.|..|+||||||. .+.+.. .-+.+ +++-+. +...+.++...+...-.+... ..+....
T Consensus 140 rGQR~~I~g~~g~GKt~Lal~~I~~q~-----~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r 214 (485)
T CHL00059 140 RGQRELIIGDRQTGKTAVATDTILNQK-----GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQ 214 (485)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHhcc-----cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHH
Confidence 34578999999999999964 455542 22333 566665 455677777776654322110 0011111
Q ss_pred -------HHHHHHHHHHhcCCcEEEEeCCCCC
Q 037625 225 -------EEKALDIFRSLREKRIVLLLDDIWE 249 (467)
Q Consensus 225 -------~~~~~~l~~~l~~k~~LlVlDdv~~ 249 (467)
...++.++. +++.+|+|+||+..
T Consensus 215 ~~ap~~a~aiAEyfr~--~G~~VLlv~DdlTr 244 (485)
T CHL00059 215 YLAPYTGAALAEYFMY--RGRHTLIIYDDLSK 244 (485)
T ss_pred HHHHHHHhhHHHHHHH--cCCCEEEEEcChhH
Confidence 122233332 57999999999953
No 481
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.61 E-value=0.04 Score=58.88 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
....++|+|+.|+|||||++.+..-.
T Consensus 490 ~G~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998665
No 482
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.61 E-value=0.013 Score=52.30 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=26.8
Q ss_pred HHhcCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 150 CLAEESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 150 ~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+...+.++|+++|+.|+|||||...+.+..
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445678999999999999999999998875
No 483
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.60 E-value=0.022 Score=49.85 Aligned_cols=44 Identities=23% Similarity=0.238 Sum_probs=33.2
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+++|.+..+..+.-..... +-+.++|++|+|||+||+.+..-+
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~--h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG--HHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhcCcHHHHHHHHHHHcCC--CCeEEECCCCCCHHHHHHHHHHhC
Confidence 45788888888777666543 578999999999999999987655
No 484
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.60 E-value=0.019 Score=54.31 Aligned_cols=49 Identities=27% Similarity=0.288 Sum_probs=36.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHH
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQED 207 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 207 (467)
.+++.+.|.||+||||+|...+-... .....++-++.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA---~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA---ESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH---HcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999998776662 22244777777777666666554
No 485
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.59 E-value=0.013 Score=56.70 Aligned_cols=100 Identities=16% Similarity=0.228 Sum_probs=55.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL 235 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 235 (467)
.+=+=|||+.|.|||-|+-.+|+.. ..+.. ...-+.+...++-+.+..... .... ...+.+.+
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f~~~l-p~~~k----------~R~HFh~Fm~~vh~~l~~~~~--~~~~----l~~va~~l 124 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLFYDSL-PIKRK----------RRVHFHEFMLDVHSRLHQLRG--QDDP----LPQVADEL 124 (362)
T ss_pred CceEEEECCCCCchhHHHHHHHHhC-Ccccc----------ccccccHHHHHHHHHHHHHhC--CCcc----HHHHHHHH
Confidence 4557899999999999999999987 32111 111223444444444332110 1112 23444555
Q ss_pred cCCcEEEEeCCCC--Chhh---hhhhccCCCCCCCCCceEEEecC
Q 037625 236 REKRIVLLLDDIW--ERVD---LTKVGVPLSGPKNTTSKVVFTTR 275 (467)
Q Consensus 236 ~~k~~LlVlDdv~--~~~~---~~~~~~~l~~~~~~~s~iiiTtR 275 (467)
.++..||.||++. |..+ +..+...+ ...|..+|.||.
T Consensus 125 ~~~~~lLcfDEF~V~DiaDAmil~rLf~~l---~~~gvvlVaTSN 166 (362)
T PF03969_consen 125 AKESRLLCFDEFQVTDIADAMILKRLFEAL---FKRGVVLVATSN 166 (362)
T ss_pred HhcCCEEEEeeeeccchhHHHHHHHHHHHH---HHCCCEEEecCC
Confidence 6667799999974 3322 33333333 345665555554
No 486
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.58 E-value=0.038 Score=52.49 Aligned_cols=110 Identities=16% Similarity=0.149 Sum_probs=56.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC-CCCCcCHHHHHHHHHHH
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGD-SWKSRSVEEKALDIFRS 234 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~~l~~~ 234 (467)
...+.|.|+.|+|||||++.+.... ... ..++.+.-........ ......... .......-...+.+...
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~---~~~-~~iv~ied~~El~~~~-----~~~~~l~~~~~~~~~~~~~~~~~l~~~ 214 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEI---PKD-ERIITIEDTREIFLPH-----PNYVHLFYSKGGQGLAKVTPKDLLQSC 214 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccC---Ccc-ccEEEEcCccccCCCC-----CCEEEEEecCCCCCcCccCHHHHHHHH
Confidence 4689999999999999999998776 211 1233332111111110 000000000 00111112334455566
Q ss_pred hcCCcEEEEeCCCCChhhhhhhccCCCCCCCCCc-eEEEecCChhh
Q 037625 235 LREKRIVLLLDDIWERVDLTKVGVPLSGPKNTTS-KVVFTTRFIGV 279 (467)
Q Consensus 235 l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s-~iiiTtR~~~~ 279 (467)
|+..+=.+++|++...+.+..+ ... ..|. -++.|+...+.
T Consensus 215 Lr~~pd~ii~gE~r~~e~~~~l-~a~----~~g~~~~i~T~Ha~~~ 255 (308)
T TIGR02788 215 LRMRPDRIILGELRGDEAFDFI-RAV----NTGHPGSITTLHAGSP 255 (308)
T ss_pred hcCCCCeEEEeccCCHHHHHHH-HHH----hcCCCeEEEEEeCCCH
Confidence 7778888999999876555433 222 1222 24666665443
No 487
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.58 E-value=0.058 Score=53.52 Aligned_cols=91 Identities=19% Similarity=0.168 Sum_probs=49.8
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHh------cCCCCCCCCcC----
Q 037625 154 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKI------GLVGDSWKSRS---- 223 (467)
Q Consensus 154 ~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l------~~~~~~~~~~~---- 223 (467)
.....++|.|..|+|||||++.+.... . .-..++++.-.+..+..++....+..- ........+.-
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~-~---~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~ 231 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNT-S---ADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIK 231 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccc-C---CCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHH
Confidence 455689999999999999999888765 1 122444444344445555544322211 11111001110
Q ss_pred HHHHHHHHHHHh--cCCcEEEEeCCCC
Q 037625 224 VEEKALDIFRSL--REKRIVLLLDDIW 248 (467)
Q Consensus 224 ~~~~~~~l~~~l--~~k~~LlVlDdv~ 248 (467)
.......+.+++ +++.+||++||+.
T Consensus 232 ~~~~a~~iAEyfr~~g~~Vll~~Dslt 258 (438)
T PRK07721 232 GAYTATAIAEYFRDQGLNVMLMMDSVT 258 (438)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeChH
Confidence 111112233333 5799999999984
No 488
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.58 E-value=0.012 Score=50.74 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...|+|+|+.|+||||+++.+.+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3469999999999999999999876
No 489
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.58 E-value=0.04 Score=54.28 Aligned_cols=90 Identities=22% Similarity=0.291 Sum_probs=50.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeC-CCCCHHHHHHHHHHHhcCCC-----CCCCCcCHHH--
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVS-KDLRLEKIQEDIGKKIGLVG-----DSWKSRSVEE-- 226 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~-- 226 (467)
....++|.|..|+|||||++.+++.. ..+...+..+. +...+.+++......-.... ...+......
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~ 228 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP-----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVR 228 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC-----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHH
Confidence 45689999999999999999888765 23334444444 34455565555432111000 0001111111
Q ss_pred ---HHHHHHHHh--cCCcEEEEeCCCCC
Q 037625 227 ---KALDIFRSL--REKRIVLLLDDIWE 249 (467)
Q Consensus 227 ---~~~~l~~~l--~~k~~LlVlDdv~~ 249 (467)
....+.+++ +++++||++||+..
T Consensus 229 a~~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 229 ALFVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 111233333 57899999999953
No 490
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.58 E-value=0.011 Score=45.92 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=19.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHH
Q 037625 156 AGIIGLYGMGGVGKTTLLTHIN 177 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~ 177 (467)
...++|.|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4579999999999999999876
No 491
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.56 E-value=0.04 Score=54.44 Aligned_cols=93 Identities=18% Similarity=0.320 Sum_probs=56.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCCCC----CCCCcCHHH---
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK-DLRLEKIQEDIGKKIGLVGD----SWKSRSVEE--- 226 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~--- 226 (467)
+-..++|.|.+|+|||||+..+..+.. .++-..+++.-+.. ...+.+++..+...-..... .....+...
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~--~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHH--hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 445789999999999999999887761 22234666666654 45667777777543221110 001111111
Q ss_pred ---HHHHHHHHh---cCCcEEEEeCCCCC
Q 037625 227 ---KALDIFRSL---REKRIVLLLDDIWE 249 (467)
Q Consensus 227 ---~~~~l~~~l---~~k~~LlVlDdv~~ 249 (467)
....+.+++ +++.+||++|++..
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 122234444 46899999999953
No 492
>PRK06761 hypothetical protein; Provisional
Probab=95.54 E-value=0.025 Score=52.41 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=22.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
++|.|.|++|+||||+++.+++..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999987
No 493
>PRK13946 shikimate kinase; Provisional
Probab=95.54 E-value=0.013 Score=51.10 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+.|.+.|++|+||||+++.+++.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999987
No 494
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.54 E-value=0.034 Score=55.03 Aligned_cols=93 Identities=19% Similarity=0.313 Sum_probs=55.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCCCCC----CCCcCHH----
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK-DLRLEKIQEDIGKKIGLVGDS----WKSRSVE---- 225 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~----~~~~~~~---- 225 (467)
.-..++|.|.+|+|||||+..+..+.. .++-+.++++-+.. ...+.++...+...-...... ....+..
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~--~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 445789999999999999999877762 12234566666644 445677777776542221000 0111111
Q ss_pred --HHHHHHHHHh---cCCcEEEEeCCCCC
Q 037625 226 --EKALDIFRSL---REKRIVLLLDDIWE 249 (467)
Q Consensus 226 --~~~~~l~~~l---~~k~~LlVlDdv~~ 249 (467)
.....+.+++ +++.+||++|++..
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 1122234444 67999999999953
No 495
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.54 E-value=0.017 Score=51.03 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=24.0
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 154 ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 154 ~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+..+|.|+|++|+||||||+.+...+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 355799999999999999999999876
No 496
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.54 E-value=0.085 Score=55.19 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+...++|+|+.|+|||||++.+..-.
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 45689999999999999999998765
No 497
>PRK13975 thymidylate kinase; Provisional
Probab=95.53 E-value=0.011 Score=52.19 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=22.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+|+|.|+.|+||||+++.+++.+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999988
No 498
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.53 E-value=0.011 Score=52.86 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=22.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..-+|+|.|++|+|||||.+.++--.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999997654
No 499
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.53 E-value=0.013 Score=52.23 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=21.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
..+.++|+|++|+|||||++.+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4578999999999999999998754
No 500
>PRK13948 shikimate kinase; Provisional
Probab=95.51 E-value=0.015 Score=50.51 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
....|.++|+.|+||||+++.+.+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999887
Done!