Query 037625
Match_columns 467
No_of_seqs 299 out of 2664
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 04:00:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037625.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037625hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.6E-49 9E-54 404.9 26.7 307 138-467 131-468 (549)
2 1vt4_I APAF-1 related killer D 100.0 2.5E-41 8.7E-46 351.4 20.8 286 136-464 129-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 2.2E-40 7.7E-45 372.0 28.4 310 131-466 120-448 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 2.7E-38 9.3E-43 327.7 26.0 307 131-466 120-448 (591)
5 2qen_A Walker-type ATPase; unk 99.8 1.2E-18 4E-23 168.2 23.7 292 133-464 10-349 (350)
6 2fna_A Conserved hypothetical 99.8 4.3E-18 1.5E-22 164.7 22.0 292 134-463 12-356 (357)
7 1w5s_A Origin recognition comp 99.8 2.9E-18 1E-22 169.3 16.4 306 135-458 22-386 (412)
8 2qby_B CDC6 homolog 3, cell di 99.6 4.8E-14 1.6E-18 137.7 24.6 288 135-448 20-339 (384)
9 2v1u_A Cell division control p 99.6 4.3E-14 1.5E-18 138.0 23.4 291 135-448 19-351 (387)
10 1fnn_A CDC6P, cell division co 99.6 8.9E-14 3E-18 136.0 25.0 290 135-448 17-351 (389)
11 3qfl_A MLA10; coiled-coil, (CC 99.6 1.3E-15 4.4E-20 120.3 9.1 83 7-97 1-84 (115)
12 2qby_A CDC6 homolog 1, cell di 99.6 1.6E-14 5.5E-19 141.0 18.7 292 134-448 19-348 (386)
13 1njg_A DNA polymerase III subu 99.5 8.9E-13 3.1E-17 119.8 16.5 197 135-343 23-231 (250)
14 2chg_A Replication factor C sm 99.5 1.4E-12 4.7E-17 116.8 15.6 184 135-340 17-204 (226)
15 1hqc_A RUVB; extended AAA-ATPa 99.3 2.8E-11 9.4E-16 115.1 14.1 176 135-343 12-214 (324)
16 1sxj_B Activator 1 37 kDa subu 99.3 1.8E-11 6.3E-16 116.2 12.6 186 135-342 21-212 (323)
17 1iqp_A RFCS; clamp loader, ext 99.2 8.5E-11 2.9E-15 111.8 10.7 184 135-343 25-215 (327)
18 2chq_A Replication factor C sm 99.1 1E-09 3.6E-14 103.8 14.6 182 135-341 17-205 (319)
19 1jr3_A DNA polymerase III subu 99.1 2.6E-09 8.8E-14 103.5 15.9 194 135-340 16-221 (373)
20 3te6_A Regulatory protein SIR3 99.0 2.7E-09 9.4E-14 99.5 14.3 170 136-308 21-212 (318)
21 3pfi_A Holliday junction ATP-d 98.9 1.2E-07 4E-12 90.5 20.3 172 135-340 29-227 (338)
22 1sxj_D Activator 1 41 kDa subu 98.9 1.1E-08 3.6E-13 98.4 12.6 193 135-339 37-234 (353)
23 3bos_A Putative DNA replicatio 98.9 2.3E-09 7.9E-14 96.9 7.4 173 135-340 28-217 (242)
24 3pvs_A Replication-associated 98.9 3.4E-08 1.2E-12 97.4 15.3 175 135-340 26-215 (447)
25 1jbk_A CLPB protein; beta barr 98.9 1.9E-09 6.5E-14 93.7 5.5 46 135-180 22-67 (195)
26 3h4m_A Proteasome-activating n 98.8 2E-08 6.9E-13 93.4 12.6 177 135-339 17-230 (285)
27 2z4s_A Chromosomal replication 98.8 2.3E-08 7.8E-13 98.7 13.1 184 135-339 105-305 (440)
28 1sxj_A Activator 1 95 kDa subu 98.8 3E-08 1E-12 100.1 14.2 189 135-340 39-253 (516)
29 1sxj_E Activator 1 40 kDa subu 98.8 3.8E-08 1.3E-12 94.5 12.3 195 135-340 14-237 (354)
30 1d2n_A N-ethylmaleimide-sensit 98.7 3.8E-07 1.3E-11 84.0 16.9 167 135-332 33-229 (272)
31 3uk6_A RUVB-like 2; hexameric 98.7 7.3E-08 2.5E-12 93.0 11.8 198 134-340 43-303 (368)
32 2qz4_A Paraplegin; AAA+, SPG7, 98.7 2.5E-07 8.6E-12 84.7 14.2 181 135-340 6-222 (262)
33 1xwi_A SKD1 protein; VPS4B, AA 98.7 2.2E-06 7.4E-11 80.9 20.7 182 135-342 12-225 (322)
34 1sxj_C Activator 1 40 kDa subu 98.7 2.4E-07 8.2E-12 88.4 14.3 177 135-337 25-209 (340)
35 3syl_A Protein CBBX; photosynt 98.7 9.1E-08 3.1E-12 90.0 10.8 155 136-310 32-220 (309)
36 1a5t_A Delta prime, HOLB; zinc 98.7 7.1E-07 2.4E-11 84.8 16.9 168 141-339 8-204 (334)
37 1l8q_A Chromosomal replication 98.6 1.7E-07 5.9E-12 88.7 12.1 177 135-337 11-205 (324)
38 3d8b_A Fidgetin-like protein 1 98.6 5.4E-07 1.8E-11 86.5 15.0 181 135-342 84-297 (357)
39 3u61_B DNA polymerase accessor 98.6 3.8E-07 1.3E-11 86.4 13.7 177 135-339 26-215 (324)
40 3eie_A Vacuolar protein sortin 98.6 4.2E-07 1.4E-11 85.9 13.5 180 135-341 18-229 (322)
41 3vfd_A Spastin; ATPase, microt 98.6 2.9E-06 1E-10 82.4 19.6 179 135-340 115-326 (389)
42 3b9p_A CG5977-PA, isoform A; A 98.6 1.8E-06 6.1E-11 80.6 17.5 179 135-340 21-233 (297)
43 2qp9_X Vacuolar protein sortin 98.6 5.2E-07 1.8E-11 86.4 13.5 180 135-341 51-262 (355)
44 3cf0_A Transitional endoplasmi 98.6 2.3E-06 7.9E-11 80.0 17.4 174 135-335 15-223 (301)
45 2zan_A Vacuolar protein sortin 98.5 4.3E-06 1.5E-10 82.5 19.5 180 135-340 134-345 (444)
46 4b4t_J 26S protease regulatory 98.4 1.8E-06 6E-11 82.7 12.8 172 135-334 148-355 (405)
47 2p65_A Hypothetical protein PF 98.4 2.5E-07 8.7E-12 79.7 6.1 46 135-180 22-67 (187)
48 2gno_A DNA polymerase III, gam 98.4 1.6E-06 5.3E-11 81.0 11.6 147 139-307 1-152 (305)
49 3pxg_A Negative regulator of g 98.4 3.2E-06 1.1E-10 84.0 14.6 149 135-309 180-340 (468)
50 4b4t_L 26S protease subunit RP 98.4 4.8E-06 1.6E-10 81.0 14.0 171 135-333 181-387 (437)
51 4b4t_H 26S protease regulatory 98.3 3.9E-06 1.3E-10 81.4 13.0 171 135-333 209-415 (467)
52 3n70_A Transport activator; si 98.3 1.5E-06 5.2E-11 71.7 8.1 45 136-180 2-48 (145)
53 1in4_A RUVB, holliday junction 98.3 6.1E-05 2.1E-09 71.3 20.4 172 135-340 25-223 (334)
54 1qvr_A CLPB protein; coiled co 98.3 2.5E-06 8.7E-11 91.3 11.7 154 135-307 170-345 (854)
55 1lv7_A FTSH; alpha/beta domain 98.3 6.1E-05 2.1E-09 68.4 19.2 177 135-338 12-223 (257)
56 4b4t_M 26S protease regulatory 98.3 1.9E-06 6.3E-11 83.8 8.9 171 135-333 181-387 (434)
57 2r62_A Cell division protease 98.3 1.2E-06 4.1E-11 80.4 7.2 173 135-334 11-219 (268)
58 4b4t_I 26S protease regulatory 98.3 4E-06 1.4E-10 80.6 10.8 171 135-333 182-388 (437)
59 3hu3_A Transitional endoplasmi 98.3 3.8E-06 1.3E-10 83.6 11.1 178 135-339 204-414 (489)
60 1r6b_X CLPA protein; AAA+, N-t 98.2 1.5E-05 5E-10 84.5 14.7 154 135-307 186-362 (758)
61 3pxi_A Negative regulator of g 98.2 1.5E-05 5.2E-10 84.2 14.3 150 135-309 180-340 (758)
62 4b4t_K 26S protease regulatory 98.2 1.4E-05 4.9E-10 77.5 12.6 171 135-333 172-379 (428)
63 1ofh_A ATP-dependent HSL prote 98.1 1.7E-05 5.9E-10 74.2 12.2 46 135-180 15-74 (310)
64 3ec2_A DNA replication protein 98.1 2.6E-06 8.9E-11 73.1 5.9 118 140-277 19-143 (180)
65 2ce7_A Cell division protein F 98.1 1.9E-05 6.5E-10 77.9 12.7 172 135-333 16-221 (476)
66 2w58_A DNAI, primosome compone 98.1 2.8E-06 9.5E-11 74.4 5.0 58 135-195 25-90 (202)
67 4fcw_A Chaperone protein CLPB; 98.0 8.3E-06 2.8E-10 76.5 7.8 60 135-197 17-85 (311)
68 3co5_A Putative two-component 98.0 2.5E-06 8.7E-11 70.1 3.4 46 135-180 4-51 (143)
69 2kjq_A DNAA-related protein; s 98.0 1.6E-06 5.6E-11 71.8 2.2 39 155-196 35-73 (149)
70 3cf2_A TER ATPase, transitiona 98.0 1.7E-05 5.8E-10 82.9 9.8 173 135-334 204-408 (806)
71 2bjv_A PSP operon transcriptio 98.0 2.4E-05 8.1E-10 71.6 9.2 61 135-198 6-68 (265)
72 2c9o_A RUVB-like 1; hexameric 98.0 7.2E-05 2.5E-09 74.1 13.2 46 135-180 37-87 (456)
73 1ojl_A Transcriptional regulat 97.9 4.2E-05 1.4E-09 71.4 9.4 46 135-180 2-49 (304)
74 3pxi_A Negative regulator of g 97.8 1.6E-05 5.4E-10 84.2 5.4 148 135-307 491-675 (758)
75 2dhr_A FTSH; AAA+ protein, hex 97.7 0.00071 2.4E-08 67.2 15.1 168 135-333 31-236 (499)
76 2r44_A Uncharacterized protein 97.7 0.00012 4.1E-09 69.2 8.8 44 135-180 27-70 (331)
77 3t15_A Ribulose bisphosphate c 97.6 8.1E-05 2.8E-09 69.1 6.9 25 156-180 36-60 (293)
78 1iy2_A ATP-dependent metallopr 97.6 0.00051 1.8E-08 63.1 12.1 172 134-333 39-245 (278)
79 3m6a_A ATP-dependent protease 97.6 0.00029 9.8E-09 71.2 11.2 46 135-180 81-132 (543)
80 1ixz_A ATP-dependent metallopr 97.6 0.00037 1.3E-08 63.1 10.9 171 135-333 16-221 (254)
81 1ypw_A Transitional endoplasmi 97.6 0.00025 8.5E-09 75.1 11.1 153 135-311 204-389 (806)
82 2x8a_A Nuclear valosin-contain 97.6 0.0011 3.8E-08 60.6 13.9 150 135-308 10-192 (274)
83 1qvr_A CLPB protein; coiled co 97.4 0.00042 1.4E-08 74.2 9.7 45 136-180 559-612 (854)
84 2cvh_A DNA repair and recombin 97.4 0.00058 2E-08 60.1 9.1 87 155-248 19-115 (220)
85 2b8t_A Thymidine kinase; deoxy 97.4 7.1E-05 2.4E-09 66.0 2.9 114 155-278 11-127 (223)
86 1r6b_X CLPA protein; AAA+, N-t 97.3 0.0008 2.7E-08 71.1 11.0 46 135-180 458-512 (758)
87 2vhj_A Ntpase P4, P4; non- hyd 97.3 0.00011 3.7E-09 68.0 3.6 69 156-249 123-193 (331)
88 1g5t_A COB(I)alamin adenosyltr 97.3 0.00014 4.8E-09 62.2 3.6 119 156-278 28-164 (196)
89 1jr3_D DNA polymerase III, del 97.3 0.0019 6.3E-08 61.3 11.7 165 147-339 9-184 (343)
90 1n0w_A DNA repair protein RAD5 97.2 0.0014 4.8E-08 58.6 9.8 93 155-248 23-129 (243)
91 3hr8_A Protein RECA; alpha and 97.2 0.00072 2.5E-08 64.0 7.9 86 155-248 60-149 (356)
92 3cf2_A TER ATPase, transitiona 97.2 0.00068 2.3E-08 70.9 8.2 170 135-332 477-682 (806)
93 2w0m_A SSO2452; RECA, SSPF, un 97.2 0.00038 1.3E-08 61.9 5.4 116 156-277 23-168 (235)
94 2z43_A DNA repair and recombin 97.1 0.0015 5.3E-08 61.3 9.5 93 155-248 106-213 (324)
95 1v5w_A DMC1, meiotic recombina 97.1 0.0026 9.1E-08 60.2 10.4 93 155-248 121-229 (343)
96 3io5_A Recombination and repai 97.0 0.0019 6.4E-08 59.5 8.2 86 157-248 29-121 (333)
97 2zr9_A Protein RECA, recombina 97.0 0.0018 6.1E-08 61.4 8.2 86 155-248 60-149 (349)
98 1xp8_A RECA protein, recombina 96.8 0.0031 1.1E-07 60.0 8.4 86 155-248 73-162 (366)
99 2i1q_A DNA repair and recombin 96.8 0.0031 1.1E-07 59.2 8.1 93 155-248 97-214 (322)
100 1u94_A RECA protein, recombina 96.8 0.0033 1.1E-07 59.6 8.1 86 155-248 62-151 (356)
101 1rz3_A Hypothetical protein rb 96.7 0.0017 5.7E-08 56.4 5.5 41 140-180 3-46 (201)
102 1g8p_A Magnesium-chelatase 38 96.7 0.00092 3.1E-08 63.5 3.6 46 135-180 24-69 (350)
103 2pze_A Cystic fibrosis transme 96.7 0.017 5.9E-07 51.0 11.6 25 156-180 34-58 (229)
104 3ice_A Transcription terminati 96.6 0.0015 5.1E-08 61.7 4.4 51 147-198 164-215 (422)
105 3nbx_X ATPase RAVA; AAA+ ATPas 96.6 0.0021 7.2E-08 63.8 5.5 44 135-180 22-65 (500)
106 3jvv_A Twitching mobility prot 96.5 0.0014 4.7E-08 62.2 3.9 114 154-280 121-234 (356)
107 1ypw_A Transitional endoplasmi 96.5 0.00043 1.5E-08 73.3 0.2 151 135-309 477-663 (806)
108 4a74_A DNA repair and recombin 96.5 0.009 3.1E-07 52.7 8.9 47 155-201 24-73 (231)
109 1qhx_A CPT, protein (chloramph 96.5 0.0014 4.9E-08 55.4 3.4 24 157-180 4-27 (178)
110 3bh0_A DNAB-like replicative h 96.5 0.0076 2.6E-07 56.2 8.5 52 155-211 67-118 (315)
111 3lda_A DNA repair protein RAD5 96.5 0.014 4.8E-07 56.2 10.5 93 155-248 177-283 (400)
112 3hws_A ATP-dependent CLP prote 96.4 0.0027 9.4E-08 60.6 5.3 45 136-180 16-75 (363)
113 3kb2_A SPBC2 prophage-derived 96.4 0.0016 5.3E-08 54.8 3.1 24 157-180 2-25 (173)
114 3c8u_A Fructokinase; YP_612366 96.4 0.0025 8.7E-08 55.6 4.6 38 143-180 7-46 (208)
115 3lw7_A Adenylate kinase relate 96.3 0.0018 6.3E-08 54.4 3.2 23 157-180 2-24 (179)
116 1um8_A ATP-dependent CLP prote 96.3 0.0037 1.3E-07 60.0 5.6 46 135-180 21-96 (376)
117 3vaa_A Shikimate kinase, SK; s 96.3 0.0022 7.4E-08 55.6 3.4 26 155-180 24-49 (199)
118 1ex7_A Guanylate kinase; subst 96.3 0.0016 5.3E-08 55.6 2.4 24 157-180 2-25 (186)
119 1kag_A SKI, shikimate kinase I 96.3 0.002 6.9E-08 54.2 2.9 24 157-180 5-28 (173)
120 1pzn_A RAD51, DNA repair and r 96.3 0.0099 3.4E-07 56.3 8.0 94 155-249 130-242 (349)
121 2px0_A Flagellar biosynthesis 96.3 0.013 4.6E-07 53.9 8.7 87 155-247 104-191 (296)
122 1zp6_A Hypothetical protein AT 96.2 0.0027 9.2E-08 54.4 3.7 25 156-180 9-33 (191)
123 1kgd_A CASK, peripheral plasma 96.2 0.0027 9.2E-08 54.0 3.6 25 156-180 5-29 (180)
124 2hf9_A Probable hydrogenase ni 96.2 0.0045 1.5E-07 54.6 5.2 40 141-180 23-62 (226)
125 1sky_E F1-ATPase, F1-ATP synth 96.2 0.013 4.4E-07 57.2 8.6 53 156-210 151-204 (473)
126 1ly1_A Polynucleotide kinase; 96.2 0.0026 8.9E-08 53.8 3.4 22 157-178 3-24 (181)
127 3trf_A Shikimate kinase, SK; a 96.2 0.0024 8.2E-08 54.4 3.1 25 156-180 5-29 (185)
128 3uie_A Adenylyl-sulfate kinase 96.2 0.003 1E-07 54.7 3.8 27 154-180 23-49 (200)
129 3sr0_A Adenylate kinase; phosp 96.2 0.01 3.5E-07 51.5 7.1 23 158-180 2-24 (206)
130 2ck3_D ATP synthase subunit be 96.1 0.031 1.1E-06 54.4 10.8 63 147-211 143-207 (482)
131 2yvu_A Probable adenylyl-sulfa 96.1 0.0028 9.5E-08 54.1 3.1 26 155-180 12-37 (186)
132 1nks_A Adenylate kinase; therm 96.1 0.0028 9.6E-08 54.3 3.1 24 157-180 2-25 (194)
133 3cmu_A Protein RECA, recombina 96.1 0.014 4.6E-07 66.7 9.2 86 155-248 1426-1515(2050)
134 4eun_A Thermoresistant glucoki 96.1 0.0035 1.2E-07 54.3 3.7 26 155-180 28-53 (200)
135 3tau_A Guanylate kinase, GMP k 96.1 0.0037 1.3E-07 54.5 3.9 26 155-180 7-32 (208)
136 3t61_A Gluconokinase; PSI-biol 96.1 0.0026 9E-08 55.1 2.9 25 156-180 18-42 (202)
137 1g41_A Heat shock protein HSLU 96.1 0.0046 1.6E-07 60.1 4.8 46 135-180 15-74 (444)
138 3iij_A Coilin-interacting nucl 96.1 0.0029 9.8E-08 53.7 3.0 25 156-180 11-35 (180)
139 1kht_A Adenylate kinase; phosp 96.1 0.0031 1.1E-07 53.9 3.1 24 157-180 4-27 (192)
140 2wsm_A Hydrogenase expression/ 96.1 0.0051 1.8E-07 54.0 4.6 42 139-180 13-54 (221)
141 2rhm_A Putative kinase; P-loop 96.0 0.0035 1.2E-07 53.7 3.4 25 156-180 5-29 (193)
142 2qor_A Guanylate kinase; phosp 96.0 0.0033 1.1E-07 54.6 3.2 26 155-180 11-36 (204)
143 3tr0_A Guanylate kinase, GMP k 96.0 0.004 1.4E-07 54.0 3.7 25 156-180 7-31 (205)
144 1ye8_A Protein THEP1, hypothet 96.0 0.0038 1.3E-07 53.0 3.4 23 158-180 2-24 (178)
145 1tue_A Replication protein E1; 96.0 0.0059 2E-07 52.4 4.5 37 144-180 45-82 (212)
146 2qgz_A Helicase loader, putati 96.0 0.0067 2.3E-07 56.4 5.3 40 141-180 134-176 (308)
147 2ga8_A Hypothetical 39.9 kDa p 96.0 0.0071 2.4E-07 56.7 5.4 43 138-180 2-48 (359)
148 2ze6_A Isopentenyl transferase 96.0 0.0035 1.2E-07 56.6 3.1 24 157-180 2-25 (253)
149 1via_A Shikimate kinase; struc 96.0 0.0032 1.1E-07 53.2 2.7 24 157-180 5-28 (175)
150 1knq_A Gluconate kinase; ALFA/ 96.0 0.0045 1.5E-07 52.1 3.6 25 156-180 8-32 (175)
151 3e70_C DPA, signal recognition 95.9 0.02 6.8E-07 53.6 8.3 27 154-180 127-153 (328)
152 1gvn_B Zeta; postsegregational 95.9 0.0072 2.5E-07 55.5 5.2 26 155-180 32-57 (287)
153 1vma_A Cell division protein F 95.9 0.015 5.1E-07 53.8 7.4 90 155-248 103-196 (306)
154 3a00_A Guanylate kinase, GMP k 95.9 0.0036 1.2E-07 53.5 2.9 24 157-180 2-25 (186)
155 1odf_A YGR205W, hypothetical 3 95.9 0.008 2.7E-07 55.3 5.4 26 155-180 30-55 (290)
156 2c95_A Adenylate kinase 1; tra 95.9 0.0043 1.5E-07 53.3 3.4 26 155-180 8-33 (196)
157 1y63_A LMAJ004144AAA protein; 95.9 0.0047 1.6E-07 52.7 3.6 24 156-179 10-33 (184)
158 2jaq_A Deoxyguanosine kinase; 95.9 0.004 1.4E-07 53.8 3.1 23 158-180 2-24 (205)
159 2plr_A DTMP kinase, probable t 95.9 0.011 3.6E-07 51.5 5.9 25 156-180 4-28 (213)
160 2iyv_A Shikimate kinase, SK; t 95.9 0.0034 1.2E-07 53.5 2.6 24 157-180 3-26 (184)
161 2j41_A Guanylate kinase; GMP, 95.9 0.005 1.7E-07 53.4 3.7 25 156-180 6-30 (207)
162 4gp7_A Metallophosphoesterase; 95.9 0.0043 1.5E-07 52.2 3.1 22 156-177 9-30 (171)
163 3ney_A 55 kDa erythrocyte memb 95.8 0.0053 1.8E-07 52.8 3.6 26 155-180 18-43 (197)
164 1tev_A UMP-CMP kinase; ploop, 95.8 0.0046 1.6E-07 53.0 3.2 25 156-180 3-27 (196)
165 2bdt_A BH3686; alpha-beta prot 95.8 0.0049 1.7E-07 52.7 3.4 23 157-179 3-25 (189)
166 1ukz_A Uridylate kinase; trans 95.8 0.0055 1.9E-07 53.1 3.7 26 155-180 14-39 (203)
167 3asz_A Uridine kinase; cytidin 95.8 0.0054 1.8E-07 53.5 3.6 26 155-180 5-30 (211)
168 1zuh_A Shikimate kinase; alpha 95.8 0.0048 1.7E-07 51.6 3.1 25 156-180 7-31 (168)
169 1e6c_A Shikimate kinase; phosp 95.8 0.0042 1.4E-07 52.2 2.7 24 157-180 3-26 (173)
170 2bwj_A Adenylate kinase 5; pho 95.8 0.0051 1.7E-07 53.0 3.3 25 156-180 12-36 (199)
171 3umf_A Adenylate kinase; rossm 95.8 0.0053 1.8E-07 53.7 3.3 26 155-180 28-53 (217)
172 2if2_A Dephospho-COA kinase; a 95.8 0.0053 1.8E-07 53.2 3.4 22 157-178 2-23 (204)
173 1lvg_A Guanylate kinase, GMP k 95.8 0.0046 1.6E-07 53.4 2.9 25 156-180 4-28 (198)
174 2vli_A Antibiotic resistance p 95.8 0.0037 1.3E-07 53.0 2.3 25 156-180 5-29 (183)
175 3cm0_A Adenylate kinase; ATP-b 95.8 0.005 1.7E-07 52.4 3.1 24 157-180 5-28 (186)
176 1uf9_A TT1252 protein; P-loop, 95.8 0.0063 2.2E-07 52.5 3.8 25 155-179 7-31 (203)
177 4a1f_A DNAB helicase, replicat 95.7 0.023 7.9E-07 53.2 7.8 52 155-211 45-96 (338)
178 1cke_A CK, MSSA, protein (cyti 95.7 0.0059 2E-07 53.9 3.5 24 157-180 6-29 (227)
179 3l0o_A Transcription terminati 95.7 0.0017 5.8E-08 61.3 -0.1 35 146-180 164-199 (427)
180 3dm5_A SRP54, signal recogniti 95.7 0.046 1.6E-06 53.0 9.9 26 155-180 99-124 (443)
181 2qt1_A Nicotinamide riboside k 95.7 0.0069 2.4E-07 52.6 3.8 25 156-180 21-45 (207)
182 2bbw_A Adenylate kinase 4, AK4 95.7 0.006 2E-07 54.7 3.4 25 156-180 27-51 (246)
183 2pt5_A Shikimate kinase, SK; a 95.7 0.0059 2E-07 51.0 3.1 23 158-180 2-24 (168)
184 3tlx_A Adenylate kinase 2; str 95.7 0.011 3.9E-07 52.7 5.2 26 155-180 28-53 (243)
185 1jjv_A Dephospho-COA kinase; P 95.7 0.0061 2.1E-07 52.9 3.3 22 157-178 3-24 (206)
186 1fx0_B ATP synthase beta chain 95.6 0.037 1.3E-06 54.1 8.9 63 147-211 155-219 (498)
187 2p5t_B PEZT; postsegregational 95.6 0.0093 3.2E-07 53.7 4.5 26 155-180 31-56 (253)
188 2pt7_A CAG-ALFA; ATPase, prote 95.6 0.017 5.8E-07 54.2 6.4 105 157-278 172-276 (330)
189 2z0h_A DTMP kinase, thymidylat 95.6 0.012 4E-07 50.5 5.0 23 158-180 2-24 (197)
190 2pbr_A DTMP kinase, thymidylat 95.6 0.006 2.1E-07 52.2 3.2 23 158-180 2-24 (195)
191 2cdn_A Adenylate kinase; phosp 95.6 0.0065 2.2E-07 52.5 3.4 25 156-180 20-44 (201)
192 1qf9_A UMP/CMP kinase, protein 95.6 0.0059 2E-07 52.2 3.1 25 156-180 6-30 (194)
193 2wwf_A Thymidilate kinase, put 95.6 0.0065 2.2E-07 52.9 3.4 25 156-180 10-34 (212)
194 3a4m_A L-seryl-tRNA(SEC) kinas 95.6 0.007 2.4E-07 54.8 3.6 25 156-180 4-28 (260)
195 1zd8_A GTP:AMP phosphotransfer 95.6 0.0068 2.3E-07 53.6 3.5 25 156-180 7-31 (227)
196 3tqc_A Pantothenate kinase; bi 95.6 0.012 4.1E-07 54.8 5.1 43 138-180 70-116 (321)
197 3k1j_A LON protease, ATP-depen 95.6 0.021 7E-07 58.5 7.4 44 135-180 41-84 (604)
198 2ffh_A Protein (FFH); SRP54, s 95.6 0.033 1.1E-06 53.9 8.3 25 156-180 98-122 (425)
199 1nn5_A Similar to deoxythymidy 95.6 0.0071 2.4E-07 52.7 3.4 25 156-180 9-33 (215)
200 2v54_A DTMP kinase, thymidylat 95.6 0.0082 2.8E-07 51.9 3.7 25 156-180 4-28 (204)
201 1znw_A Guanylate kinase, GMP k 95.5 0.0079 2.7E-07 52.3 3.6 26 155-180 19-44 (207)
202 1aky_A Adenylate kinase; ATP:A 95.5 0.0078 2.7E-07 52.9 3.4 25 156-180 4-28 (220)
203 1uj2_A Uridine-cytidine kinase 95.5 0.0082 2.8E-07 54.0 3.6 26 155-180 21-46 (252)
204 1xjc_A MOBB protein homolog; s 95.5 0.0081 2.8E-07 50.2 3.3 26 155-180 3-28 (169)
205 2yhs_A FTSY, cell division pro 95.5 0.064 2.2E-06 52.7 10.0 26 155-180 292-317 (503)
206 3fb4_A Adenylate kinase; psych 95.5 0.0072 2.5E-07 52.8 3.1 23 158-180 2-24 (216)
207 3dl0_A Adenylate kinase; phosp 95.5 0.0079 2.7E-07 52.6 3.3 23 158-180 2-24 (216)
208 3kl4_A SRP54, signal recogniti 95.5 0.052 1.8E-06 52.6 9.3 25 156-180 97-121 (433)
209 1z6g_A Guanylate kinase; struc 95.5 0.0076 2.6E-07 52.9 3.2 25 156-180 23-47 (218)
210 1s96_A Guanylate kinase, GMP k 95.5 0.009 3.1E-07 52.4 3.7 26 155-180 15-40 (219)
211 1htw_A HI0065; nucleotide-bind 95.4 0.0085 2.9E-07 49.6 3.3 27 154-180 31-57 (158)
212 4e22_A Cytidylate kinase; P-lo 95.4 0.0087 3E-07 53.9 3.6 26 155-180 26-51 (252)
213 1j8m_F SRP54, signal recogniti 95.4 0.047 1.6E-06 50.3 8.6 89 156-247 98-189 (297)
214 2jeo_A Uridine-cytidine kinase 95.4 0.0093 3.2E-07 53.4 3.8 26 155-180 24-49 (245)
215 2grj_A Dephospho-COA kinase; T 95.4 0.0084 2.9E-07 51.4 3.3 26 155-180 11-36 (192)
216 1zak_A Adenylate kinase; ATP:A 95.4 0.0078 2.7E-07 52.9 3.1 25 156-180 5-29 (222)
217 1gtv_A TMK, thymidylate kinase 95.4 0.0048 1.7E-07 53.8 1.6 23 158-180 2-24 (214)
218 3aez_A Pantothenate kinase; tr 95.3 0.0099 3.4E-07 55.3 3.7 26 155-180 89-114 (312)
219 2q6t_A DNAB replication FORK h 95.3 0.068 2.3E-06 52.4 9.7 53 155-211 199-251 (444)
220 2xxa_A Signal recognition part 95.3 0.058 2E-06 52.5 9.0 26 155-180 99-124 (433)
221 2pez_A Bifunctional 3'-phospho 95.2 0.012 4.1E-07 49.7 3.6 25 156-180 5-29 (179)
222 1zu4_A FTSY; GTPase, signal re 95.2 0.025 8.6E-07 52.7 6.0 26 155-180 104-129 (320)
223 1m7g_A Adenylylsulfate kinase; 95.2 0.018 6.3E-07 50.1 4.7 27 154-180 23-49 (211)
224 1rj9_A FTSY, signal recognitio 95.2 0.012 4.3E-07 54.3 3.8 26 155-180 101-126 (304)
225 3exa_A TRNA delta(2)-isopenten 95.1 0.013 4.5E-07 53.9 3.7 25 156-180 3-27 (322)
226 3ake_A Cytidylate kinase; CMP 95.1 0.011 3.8E-07 51.2 3.1 24 157-180 3-26 (208)
227 3be4_A Adenylate kinase; malar 95.1 0.01 3.5E-07 52.0 2.9 24 157-180 6-29 (217)
228 2i3b_A HCR-ntpase, human cance 95.1 0.011 3.7E-07 50.6 3.0 23 158-180 3-25 (189)
229 3lnc_A Guanylate kinase, GMP k 95.1 0.0085 2.9E-07 53.1 2.3 25 156-180 27-52 (231)
230 2ehv_A Hypothetical protein PH 95.1 0.013 4.4E-07 52.4 3.6 24 155-178 29-52 (251)
231 3a8t_A Adenylate isopentenyltr 95.1 0.014 4.6E-07 54.5 3.7 25 156-180 40-64 (339)
232 3cmu_A Protein RECA, recombina 95.1 0.056 1.9E-06 61.9 9.2 86 155-248 382-471 (2050)
233 3b85_A Phosphate starvation-in 95.1 0.019 6.4E-07 49.9 4.4 23 157-179 23-45 (208)
234 1vht_A Dephospho-COA kinase; s 95.1 0.014 4.8E-07 51.1 3.6 23 156-178 4-26 (218)
235 3b5x_A Lipid A export ATP-bind 95.0 0.096 3.3E-06 53.3 10.3 26 155-180 368-393 (582)
236 3fwy_A Light-independent proto 95.0 0.021 7.2E-07 53.1 4.9 41 154-197 46-86 (314)
237 3r20_A Cytidylate kinase; stru 95.0 0.013 4.3E-07 51.9 3.3 25 156-180 9-33 (233)
238 3d3q_A TRNA delta(2)-isopenten 95.0 0.013 4.3E-07 54.9 3.3 24 157-180 8-31 (340)
239 1ls1_A Signal recognition part 95.0 0.043 1.5E-06 50.5 7.0 88 156-247 98-189 (295)
240 3tif_A Uncharacterized ABC tra 95.0 0.013 4.6E-07 52.0 3.4 26 155-180 30-55 (235)
241 3bgw_A DNAB-like replicative h 95.0 0.056 1.9E-06 52.8 8.1 51 155-210 196-246 (444)
242 2onk_A Molybdate/tungstate ABC 95.0 0.014 4.9E-07 52.0 3.5 26 154-180 23-48 (240)
243 4eaq_A DTMP kinase, thymidylat 95.0 0.025 8.6E-07 50.0 5.1 26 155-180 25-50 (229)
244 4gzl_A RAS-related C3 botulinu 95.0 0.014 4.8E-07 50.4 3.5 42 139-180 13-54 (204)
245 3crm_A TRNA delta(2)-isopenten 95.0 0.013 4.5E-07 54.4 3.4 24 157-180 6-29 (323)
246 2f1r_A Molybdopterin-guanine d 95.0 0.0089 3E-07 50.2 2.0 24 157-180 3-26 (171)
247 1sq5_A Pantothenate kinase; P- 95.0 0.025 8.7E-07 52.5 5.4 27 154-180 78-104 (308)
248 2pcj_A ABC transporter, lipopr 95.0 0.012 4E-07 51.9 2.9 25 156-180 30-54 (224)
249 2xb4_A Adenylate kinase; ATP-b 95.0 0.013 4.4E-07 51.6 3.1 23 158-180 2-24 (223)
250 3io3_A DEHA2D07832P; chaperone 94.9 0.028 9.5E-07 53.0 5.6 52 150-202 12-63 (348)
251 1e4v_A Adenylate kinase; trans 94.9 0.013 4.4E-07 51.2 3.1 23 158-180 2-24 (214)
252 1np6_A Molybdopterin-guanine d 94.9 0.016 5.5E-07 48.8 3.5 25 156-180 6-30 (174)
253 3iqw_A Tail-anchored protein t 94.9 0.036 1.2E-06 52.0 6.2 51 151-204 11-61 (334)
254 3p32_A Probable GTPase RV1496/ 94.9 0.042 1.4E-06 52.1 6.8 37 144-180 65-103 (355)
255 1q57_A DNA primase/helicase; d 94.9 0.11 3.6E-06 51.9 10.1 53 155-211 241-293 (503)
256 1ak2_A Adenylate kinase isoenz 94.9 0.015 5E-07 51.6 3.4 25 156-180 16-40 (233)
257 3nwj_A ATSK2; P loop, shikimat 94.9 0.014 4.7E-07 52.4 3.2 25 156-180 48-72 (250)
258 2dr3_A UPF0273 protein PH0284; 94.9 0.016 5.6E-07 51.6 3.7 48 155-207 22-69 (247)
259 2f6r_A COA synthase, bifunctio 94.9 0.016 5.4E-07 53.1 3.6 23 156-178 75-97 (281)
260 2r9v_A ATP synthase subunit al 94.9 0.02 6.7E-07 56.1 4.4 96 148-248 166-277 (515)
261 3end_A Light-independent proto 94.9 0.024 8.3E-07 52.5 4.9 42 154-198 39-80 (307)
262 2j37_W Signal recognition part 94.8 0.12 3.9E-06 51.3 9.8 25 156-180 101-125 (504)
263 2qe7_A ATP synthase subunit al 94.8 0.019 6.6E-07 56.1 4.1 96 148-248 153-264 (502)
264 3cmw_A Protein RECA, recombina 94.8 0.047 1.6E-06 61.6 7.6 86 155-248 382-471 (1706)
265 2cbz_A Multidrug resistance-as 94.8 0.017 5.7E-07 51.4 3.4 26 155-180 30-55 (237)
266 3j16_B RLI1P; ribosome recycli 94.8 0.11 3.9E-06 52.7 9.9 26 155-180 102-127 (608)
267 1u0j_A DNA replication protein 94.7 0.033 1.1E-06 50.0 5.2 37 144-180 90-128 (267)
268 3f9v_A Minichromosome maintena 94.7 0.0095 3.3E-07 60.7 1.9 45 136-180 296-351 (595)
269 3foz_A TRNA delta(2)-isopenten 94.7 0.018 6.1E-07 52.9 3.5 25 156-180 10-34 (316)
270 3gfo_A Cobalt import ATP-bindi 94.7 0.015 5.1E-07 52.9 2.9 25 156-180 34-58 (275)
271 1b0u_A Histidine permease; ABC 94.7 0.017 6E-07 52.2 3.4 26 155-180 31-56 (262)
272 3oaa_A ATP synthase subunit al 94.7 0.043 1.5E-06 53.6 6.2 95 148-248 153-264 (513)
273 3upu_A ATP-dependent DNA helic 94.7 0.034 1.2E-06 54.8 5.7 39 141-180 31-69 (459)
274 3b9q_A Chloroplast SRP recepto 94.7 0.02 6.8E-07 53.0 3.7 25 156-180 100-124 (302)
275 1sgw_A Putative ABC transporte 94.7 0.014 4.8E-07 51.0 2.5 25 156-180 35-59 (214)
276 1ji0_A ABC transporter; ATP bi 94.6 0.016 5.5E-07 51.6 3.0 26 155-180 31-56 (240)
277 2eyu_A Twitching motility prot 94.6 0.029 9.9E-07 50.7 4.6 110 154-279 23-135 (261)
278 1g6h_A High-affinity branched- 94.6 0.016 5.5E-07 52.2 3.0 25 156-180 33-57 (257)
279 2d2e_A SUFC protein; ABC-ATPas 94.6 0.018 6.2E-07 51.6 3.3 24 156-179 29-52 (250)
280 4edh_A DTMP kinase, thymidylat 94.6 0.05 1.7E-06 47.4 6.0 25 156-180 6-30 (213)
281 2qmh_A HPR kinase/phosphorylas 94.6 0.018 6.3E-07 49.1 3.0 25 156-180 34-58 (205)
282 4g1u_C Hemin import ATP-bindin 94.6 0.017 5.6E-07 52.4 3.0 26 155-180 36-61 (266)
283 1fx0_A ATP synthase alpha chai 94.6 0.04 1.4E-06 53.9 5.8 86 156-248 163-265 (507)
284 2r6a_A DNAB helicase, replicat 94.6 0.056 1.9E-06 53.1 7.0 51 155-209 202-252 (454)
285 2olj_A Amino acid ABC transpor 94.6 0.02 6.8E-07 51.8 3.4 26 155-180 49-74 (263)
286 1a7j_A Phosphoribulokinase; tr 94.6 0.011 3.6E-07 54.5 1.6 26 155-180 4-29 (290)
287 2zu0_C Probable ATP-dependent 94.6 0.019 6.6E-07 52.0 3.3 25 155-179 45-69 (267)
288 1oix_A RAS-related protein RAB 94.5 0.021 7.1E-07 48.8 3.3 24 157-180 30-53 (191)
289 2ff7_A Alpha-hemolysin translo 94.5 0.018 6.1E-07 51.6 3.0 25 156-180 35-59 (247)
290 1p9r_A General secretion pathw 94.5 0.06 2.1E-06 52.1 6.8 34 146-180 158-191 (418)
291 1mv5_A LMRA, multidrug resista 94.5 0.018 6.1E-07 51.4 2.9 26 155-180 27-52 (243)
292 1vpl_A ABC transporter, ATP-bi 94.5 0.018 6.3E-07 51.8 2.9 26 155-180 40-65 (256)
293 2v9p_A Replication protein E1; 94.5 0.024 8.3E-07 52.2 3.7 27 154-180 124-150 (305)
294 1ltq_A Polynucleotide kinase; 94.5 0.021 7.1E-07 52.8 3.4 23 157-179 3-25 (301)
295 3hjn_A DTMP kinase, thymidylat 94.5 0.043 1.5E-06 47.2 5.1 23 158-180 2-24 (197)
296 2qi9_C Vitamin B12 import ATP- 94.4 0.019 6.6E-07 51.4 2.9 25 156-180 26-50 (249)
297 2dyk_A GTP-binding protein; GT 94.4 0.025 8.7E-07 46.3 3.5 24 157-180 2-25 (161)
298 2ghi_A Transport protein; mult 94.4 0.023 7.7E-07 51.3 3.4 26 155-180 45-70 (260)
299 2ixe_A Antigen peptide transpo 94.4 0.023 7.9E-07 51.6 3.4 26 155-180 44-69 (271)
300 3zvl_A Bifunctional polynucleo 94.4 0.024 8.2E-07 55.1 3.6 26 155-180 257-282 (416)
301 3gqb_B V-type ATP synthase bet 94.3 0.026 9E-07 54.5 3.8 92 156-248 147-261 (464)
302 2ihy_A ABC transporter, ATP-bi 94.3 0.021 7.1E-07 52.1 2.9 26 155-180 46-71 (279)
303 2nq2_C Hypothetical ABC transp 94.3 0.021 7.2E-07 51.3 2.9 25 156-180 31-55 (253)
304 2yz2_A Putative ABC transporte 94.3 0.025 8.4E-07 51.3 3.4 26 155-180 32-57 (266)
305 2f9l_A RAB11B, member RAS onco 94.3 0.023 7.9E-07 48.8 3.1 24 157-180 6-29 (199)
306 2wji_A Ferrous iron transport 94.3 0.025 8.7E-07 46.8 3.2 23 157-179 4-26 (165)
307 1g8f_A Sulfate adenylyltransfe 94.3 0.038 1.3E-06 54.7 4.9 44 137-180 374-419 (511)
308 2zej_A Dardarin, leucine-rich 94.2 0.021 7E-07 48.4 2.6 22 158-179 4-25 (184)
309 2r8r_A Sensor protein; KDPD, P 94.2 0.041 1.4E-06 48.0 4.5 23 158-180 8-30 (228)
310 1nlf_A Regulatory protein REPA 94.2 0.025 8.4E-07 51.7 3.3 25 156-180 30-54 (279)
311 1svm_A Large T antigen; AAA+ f 94.2 0.028 9.7E-07 53.5 3.8 27 154-180 167-193 (377)
312 2og2_A Putative signal recogni 94.2 0.029 9.8E-07 53.1 3.7 25 156-180 157-181 (359)
313 2ocp_A DGK, deoxyguanosine kin 94.2 0.029 1E-06 49.9 3.6 25 156-180 2-26 (241)
314 3lv8_A DTMP kinase, thymidylat 94.2 0.057 2E-06 47.8 5.4 25 156-180 27-51 (236)
315 3sop_A Neuronal-specific septi 94.1 0.027 9.2E-07 51.1 3.3 23 158-180 4-26 (270)
316 3vr4_D V-type sodium ATPase su 94.1 0.035 1.2E-06 53.7 4.1 90 157-248 152-258 (465)
317 1zj6_A ADP-ribosylation factor 94.1 0.053 1.8E-06 45.9 5.0 34 145-179 6-39 (187)
318 1q3t_A Cytidylate kinase; nucl 94.1 0.031 1E-06 49.6 3.5 26 155-180 15-40 (236)
319 3kta_A Chromosome segregation 94.1 0.033 1.1E-06 47.0 3.6 24 157-180 27-50 (182)
320 2ck3_A ATP synthase subunit al 94.1 0.035 1.2E-06 54.4 4.0 101 148-248 153-272 (510)
321 1yrb_A ATP(GTP)binding protein 94.0 0.053 1.8E-06 48.8 5.1 26 155-180 13-38 (262)
322 3qf4_A ABC transporter, ATP-bi 94.0 0.12 4.1E-06 52.5 8.2 26 155-180 368-393 (587)
323 3eph_A TRNA isopentenyltransfe 94.0 0.029 9.9E-07 53.5 3.4 24 157-180 3-26 (409)
324 1cr0_A DNA primase/helicase; R 94.0 0.028 9.7E-07 51.7 3.2 50 155-208 34-83 (296)
325 4tmk_A Protein (thymidylate ki 94.0 0.07 2.4E-06 46.4 5.5 24 157-180 4-27 (213)
326 2ce2_X GTPase HRAS; signaling 94.0 0.03 1E-06 45.9 3.1 23 158-180 5-27 (166)
327 3thx_A DNA mismatch repair pro 94.0 0.11 3.9E-06 55.4 8.1 22 155-176 661-682 (934)
328 2pjz_A Hypothetical protein ST 94.0 0.027 9.3E-07 50.8 2.9 24 156-179 30-53 (263)
329 3cmw_A Protein RECA, recombina 93.9 0.093 3.2E-06 59.3 7.6 85 155-247 1430-1518(1706)
330 3fvq_A Fe(3+) IONS import ATP- 93.9 0.03 1E-06 52.8 3.2 26 155-180 29-54 (359)
331 1z2a_A RAS-related protein RAB 93.9 0.032 1.1E-06 46.0 3.1 24 157-180 6-29 (168)
332 2vp4_A Deoxynucleoside kinase; 93.9 0.027 9.1E-07 49.8 2.7 25 155-179 19-43 (230)
333 2orw_A Thymidine kinase; TMTK, 93.8 0.039 1.3E-06 46.9 3.6 24 157-180 4-27 (184)
334 2wjg_A FEOB, ferrous iron tran 93.8 0.033 1.1E-06 47.1 3.1 23 157-179 8-30 (188)
335 2j9r_A Thymidine kinase; TK1, 93.8 0.054 1.8E-06 46.9 4.4 110 156-278 28-139 (214)
336 1cp2_A CP2, nitrogenase iron p 93.8 0.059 2E-06 48.7 5.0 38 157-197 2-39 (269)
337 2bbs_A Cystic fibrosis transme 93.8 0.035 1.2E-06 50.9 3.4 26 155-180 63-88 (290)
338 2c61_A A-type ATP synthase non 93.8 0.044 1.5E-06 53.3 4.1 92 156-248 152-259 (469)
339 2nzj_A GTP-binding protein REM 93.7 0.033 1.1E-06 46.3 3.0 24 157-180 5-28 (175)
340 2ged_A SR-beta, signal recogni 93.7 0.045 1.5E-06 46.5 3.8 26 155-180 47-72 (193)
341 3kjh_A CO dehydrogenase/acetyl 93.7 0.072 2.5E-06 47.4 5.3 42 159-203 3-44 (254)
342 3mfy_A V-type ATP synthase alp 93.7 0.13 4.5E-06 50.8 7.3 57 147-208 217-275 (588)
343 2lkc_A Translation initiation 93.7 0.048 1.6E-06 45.5 3.8 26 155-180 7-32 (178)
344 1moz_A ARL1, ADP-ribosylation 93.6 0.032 1.1E-06 46.9 2.7 25 154-178 16-40 (183)
345 1z47_A CYSA, putative ABC-tran 93.6 0.037 1.3E-06 52.2 3.3 26 155-180 40-65 (355)
346 1nrj_B SR-beta, signal recogni 93.6 0.047 1.6E-06 47.5 3.8 26 155-180 11-36 (218)
347 1p5z_B DCK, deoxycytidine kina 93.6 0.026 8.9E-07 51.0 2.2 26 155-180 23-48 (263)
348 3v9p_A DTMP kinase, thymidylat 93.6 0.049 1.7E-06 47.9 3.9 25 156-180 25-49 (227)
349 1u8z_A RAS-related protein RAL 93.6 0.039 1.3E-06 45.4 3.1 24 157-180 5-28 (168)
350 3nh6_A ATP-binding cassette SU 93.6 0.03 1E-06 51.7 2.6 26 155-180 79-104 (306)
351 3rlf_A Maltose/maltodextrin im 93.6 0.038 1.3E-06 52.6 3.3 26 155-180 28-53 (381)
352 2gj8_A MNME, tRNA modification 93.6 0.039 1.3E-06 46.1 3.1 23 157-179 5-27 (172)
353 3tui_C Methionine import ATP-b 93.6 0.038 1.3E-06 52.2 3.3 26 155-180 53-78 (366)
354 3con_A GTPase NRAS; structural 93.6 0.039 1.3E-06 46.7 3.1 23 158-180 23-45 (190)
355 1z08_A RAS-related protein RAB 93.6 0.04 1.4E-06 45.5 3.1 24 157-180 7-30 (170)
356 1fzq_A ADP-ribosylation factor 93.5 0.042 1.4E-06 46.3 3.3 25 155-179 15-39 (181)
357 1kao_A RAP2A; GTP-binding prot 93.5 0.041 1.4E-06 45.2 3.1 23 158-180 5-27 (167)
358 1ek0_A Protein (GTP-binding pr 93.5 0.041 1.4E-06 45.4 3.1 23 158-180 5-27 (170)
359 1tq4_A IIGP1, interferon-induc 93.5 0.061 2.1E-06 51.9 4.6 26 155-180 68-93 (413)
360 2yyz_A Sugar ABC transporter, 93.5 0.046 1.6E-06 51.6 3.7 26 155-180 28-53 (359)
361 1c1y_A RAS-related protein RAP 93.5 0.042 1.4E-06 45.2 3.1 23 158-180 5-27 (167)
362 2it1_A 362AA long hypothetical 93.5 0.047 1.6E-06 51.7 3.7 26 155-180 28-53 (362)
363 1z0j_A RAB-22, RAS-related pro 93.5 0.042 1.5E-06 45.4 3.1 23 158-180 8-30 (170)
364 3cr8_A Sulfate adenylyltranfer 93.5 0.052 1.8E-06 54.5 4.2 26 155-180 368-393 (552)
365 1svi_A GTP-binding protein YSX 93.5 0.051 1.7E-06 46.2 3.7 25 155-179 22-46 (195)
366 1m7b_A RND3/RHOE small GTP-bin 93.5 0.042 1.4E-06 46.4 3.1 24 157-180 8-31 (184)
367 3fdi_A Uncharacterized protein 93.4 0.049 1.7E-06 47.0 3.5 25 156-180 6-30 (201)
368 2erx_A GTP-binding protein DI- 93.4 0.043 1.5E-06 45.4 3.1 23 158-180 5-27 (172)
369 2h92_A Cytidylate kinase; ross 93.4 0.041 1.4E-06 48.0 3.1 24 157-180 4-27 (219)
370 3q85_A GTP-binding protein REM 93.4 0.042 1.4E-06 45.4 3.0 22 158-179 4-25 (169)
371 1ky3_A GTP-binding protein YPT 93.4 0.044 1.5E-06 45.9 3.1 25 156-180 8-32 (182)
372 2www_A Methylmalonic aciduria 93.4 0.092 3.1E-06 49.6 5.6 26 155-180 73-98 (349)
373 3ld9_A DTMP kinase, thymidylat 93.4 0.051 1.8E-06 47.6 3.5 27 154-180 19-45 (223)
374 1g29_1 MALK, maltose transport 93.4 0.043 1.5E-06 52.2 3.3 25 156-180 29-53 (372)
375 2afh_E Nitrogenase iron protei 93.4 0.067 2.3E-06 49.0 4.5 39 156-197 2-40 (289)
376 1wms_A RAB-9, RAB9, RAS-relate 93.4 0.045 1.5E-06 45.6 3.1 24 157-180 8-31 (177)
377 1v43_A Sugar-binding transport 93.3 0.043 1.5E-06 52.1 3.3 26 155-180 36-61 (372)
378 3ihw_A Centg3; RAS, centaurin, 93.3 0.045 1.5E-06 46.3 3.1 24 157-180 21-44 (184)
379 1g16_A RAS-related protein SEC 93.3 0.045 1.6E-06 45.2 3.1 23 158-180 5-27 (170)
380 1nij_A Hypothetical protein YJ 93.3 0.035 1.2E-06 51.7 2.6 26 155-180 3-28 (318)
381 1r8s_A ADP-ribosylation factor 93.3 0.045 1.5E-06 45.0 3.0 22 159-180 3-24 (164)
382 3q72_A GTP-binding protein RAD 93.3 0.036 1.2E-06 45.7 2.4 22 158-179 4-25 (166)
383 4f4c_A Multidrug resistance pr 93.3 0.16 5.6E-06 56.7 8.3 26 155-180 443-468 (1321)
384 2hxs_A RAB-26, RAS-related pro 93.3 0.05 1.7E-06 45.4 3.3 24 157-180 7-30 (178)
385 3pqc_A Probable GTP-binding pr 93.3 0.057 1.9E-06 45.8 3.7 25 156-180 23-47 (195)
386 3llm_A ATP-dependent RNA helic 93.3 0.25 8.5E-06 43.6 8.0 101 145-249 67-187 (235)
387 4hlc_A DTMP kinase, thymidylat 93.3 0.15 5E-06 44.1 6.3 24 157-180 3-26 (205)
388 2orv_A Thymidine kinase; TP4A 93.3 0.076 2.6E-06 46.4 4.4 108 156-277 19-126 (234)
389 1f6b_A SAR1; gtpases, N-termin 93.2 0.061 2.1E-06 46.1 3.9 25 155-179 24-48 (198)
390 4akg_A Glutathione S-transfera 93.2 0.2 6.7E-06 59.4 9.1 75 157-248 1268-1346(2695)
391 3d31_A Sulfate/molybdate ABC t 93.2 0.042 1.4E-06 51.7 3.0 26 155-180 25-50 (348)
392 2fn4_A P23, RAS-related protei 93.2 0.048 1.6E-06 45.6 3.1 25 156-180 9-33 (181)
393 2ewv_A Twitching motility prot 93.2 0.057 2E-06 51.5 3.9 113 154-279 134-246 (372)
394 3c5c_A RAS-like protein 12; GD 93.2 0.049 1.7E-06 46.2 3.1 24 157-180 22-45 (187)
395 2cxx_A Probable GTP-binding pr 93.2 0.046 1.6E-06 46.2 3.0 23 158-180 3-25 (190)
396 1r2q_A RAS-related protein RAB 93.2 0.051 1.7E-06 44.8 3.1 23 158-180 8-30 (170)
397 2fz4_A DNA repair protein RAD2 93.2 0.44 1.5E-05 42.0 9.5 39 139-180 94-132 (237)
398 4b3f_X DNA-binding protein smu 93.2 0.087 3E-06 54.3 5.5 62 142-209 193-254 (646)
399 2obl_A ESCN; ATPase, hydrolase 93.1 0.1 3.6E-06 49.1 5.6 27 154-180 69-95 (347)
400 1m2o_B GTP-binding protein SAR 93.1 0.05 1.7E-06 46.3 3.1 24 156-179 23-46 (190)
401 2woj_A ATPase GET3; tail-ancho 93.1 0.13 4.4E-06 48.7 6.2 50 154-204 16-65 (354)
402 2gza_A Type IV secretion syste 93.1 0.087 3E-06 50.0 5.0 25 156-180 175-199 (361)
403 3t1o_A Gliding protein MGLA; G 93.1 0.054 1.8E-06 46.0 3.2 24 157-180 15-38 (198)
404 1upt_A ARL1, ADP-ribosylation 93.1 0.054 1.8E-06 44.8 3.1 24 157-180 8-31 (171)
405 1lw7_A Transcriptional regulat 93.1 0.049 1.7E-06 51.9 3.2 25 156-180 170-194 (365)
406 1z0f_A RAB14, member RAS oncog 93.0 0.053 1.8E-06 45.2 3.1 24 157-180 16-39 (179)
407 2bme_A RAB4A, RAS-related prot 93.0 0.053 1.8E-06 45.6 3.1 24 157-180 11-34 (186)
408 3tqf_A HPR(Ser) kinase; transf 93.0 0.058 2E-06 44.8 3.1 23 157-179 17-39 (181)
409 3gmt_A Adenylate kinase; ssgci 93.0 0.049 1.7E-06 47.8 2.9 25 156-180 8-32 (230)
410 2y8e_A RAB-protein 6, GH09086P 93.0 0.054 1.9E-06 45.1 3.1 23 158-180 16-38 (179)
411 3kkq_A RAS-related protein M-R 93.0 0.055 1.9E-06 45.5 3.1 24 157-180 19-42 (183)
412 2iwr_A Centaurin gamma 1; ANK 93.0 0.043 1.5E-06 45.9 2.4 23 158-180 9-31 (178)
413 2woo_A ATPase GET3; tail-ancho 93.0 0.12 4.1E-06 48.3 5.7 44 153-199 16-59 (329)
414 4dsu_A GTPase KRAS, isoform 2B 93.0 0.055 1.9E-06 45.6 3.1 23 158-180 6-28 (189)
415 1oxx_K GLCV, glucose, ABC tran 93.0 0.04 1.4E-06 52.0 2.4 26 155-180 30-55 (353)
416 3gd7_A Fusion complex of cysti 92.9 0.054 1.8E-06 51.8 3.2 26 155-180 46-71 (390)
417 2qm8_A GTPase/ATPase; G protei 92.9 0.064 2.2E-06 50.4 3.7 27 154-180 53-79 (337)
418 3bc1_A RAS-related protein RAB 92.9 0.057 1.9E-06 45.7 3.1 24 157-180 12-35 (195)
419 2oil_A CATX-8, RAS-related pro 92.9 0.057 2E-06 45.9 3.1 24 157-180 26-49 (193)
420 3tw8_B RAS-related protein RAB 92.9 0.046 1.6E-06 45.7 2.5 25 156-180 9-33 (181)
421 1mh1_A RAC1; GTP-binding, GTPa 92.9 0.058 2E-06 45.3 3.1 23 158-180 7-29 (186)
422 2efe_B Small GTP-binding prote 92.8 0.06 2.1E-06 45.0 3.1 24 157-180 13-36 (181)
423 2a9k_A RAS-related protein RAL 92.8 0.06 2E-06 45.2 3.1 24 157-180 19-42 (187)
424 3bwd_D RAC-like GTP-binding pr 92.8 0.06 2.1E-06 45.1 3.1 24 157-180 9-32 (182)
425 3llu_A RAS-related GTP-binding 92.8 0.058 2E-06 46.1 3.0 25 156-180 20-44 (196)
426 3t5g_A GTP-binding protein RHE 92.8 0.061 2.1E-06 45.1 3.1 24 157-180 7-30 (181)
427 3tmk_A Thymidylate kinase; pho 92.8 0.15 5.3E-06 44.3 5.7 25 156-180 5-29 (216)
428 4dzz_A Plasmid partitioning pr 92.8 0.079 2.7E-06 45.5 3.9 43 157-202 2-45 (206)
429 2cjw_A GTP-binding protein GEM 92.8 0.061 2.1E-06 45.8 3.1 22 157-178 7-28 (192)
430 2atv_A RERG, RAS-like estrogen 92.7 0.062 2.1E-06 45.8 3.1 25 156-180 28-52 (196)
431 1f2t_A RAD50 ABC-ATPase; DNA d 92.7 0.071 2.4E-06 43.4 3.3 25 156-180 23-47 (149)
432 1ksh_A ARF-like protein 2; sma 92.7 0.068 2.3E-06 45.0 3.3 27 154-180 16-42 (186)
433 2bov_A RAla, RAS-related prote 92.7 0.063 2.1E-06 46.1 3.1 25 156-180 14-38 (206)
434 2fg5_A RAB-22B, RAS-related pr 92.7 0.063 2.2E-06 45.6 3.1 24 157-180 24-47 (192)
435 2g6b_A RAS-related protein RAB 92.7 0.065 2.2E-06 44.8 3.1 24 157-180 11-34 (180)
436 1c9k_A COBU, adenosylcobinamid 92.7 0.058 2E-06 45.4 2.7 34 158-198 1-34 (180)
437 1gwn_A RHO-related GTP-binding 92.7 0.063 2.2E-06 46.3 3.1 25 156-180 28-52 (205)
438 2ew1_A RAS-related protein RAB 92.7 0.064 2.2E-06 46.2 3.1 24 157-180 27-50 (201)
439 1vg8_A RAS-related protein RAB 92.6 0.065 2.2E-06 46.0 3.1 25 156-180 8-32 (207)
440 2qnr_A Septin-2, protein NEDD5 92.6 0.055 1.9E-06 49.9 2.8 22 158-179 20-41 (301)
441 2gks_A Bifunctional SAT/APS ki 92.6 0.12 4E-06 52.0 5.3 43 138-180 352-396 (546)
442 2v3c_C SRP54, signal recogniti 92.6 0.047 1.6E-06 53.1 2.3 25 156-180 99-123 (432)
443 2gf9_A RAS-related protein RAB 92.6 0.067 2.3E-06 45.3 3.1 24 157-180 23-46 (189)
444 3clv_A RAB5 protein, putative; 92.6 0.066 2.3E-06 45.7 3.1 24 157-180 8-31 (208)
445 3dz8_A RAS-related protein RAB 92.6 0.065 2.2E-06 45.5 3.0 24 157-180 24-47 (191)
446 2yv5_A YJEQ protein; hydrolase 92.6 0.099 3.4E-06 48.2 4.5 33 144-180 156-188 (302)
447 1pui_A ENGB, probable GTP-bind 92.6 0.032 1.1E-06 48.2 1.1 25 155-179 25-49 (210)
448 1zbd_A Rabphilin-3A; G protein 92.5 0.067 2.3E-06 45.8 3.1 24 157-180 9-32 (203)
449 1zd9_A ADP-ribosylation factor 92.5 0.069 2.3E-06 45.2 3.1 24 157-180 23-46 (188)
450 3vr4_A V-type sodium ATPase ca 92.5 0.18 6.2E-06 50.0 6.4 57 147-208 222-280 (600)
451 2fh5_B SR-beta, signal recogni 92.5 0.068 2.3E-06 46.3 3.1 25 156-180 7-31 (214)
452 3cbq_A GTP-binding protein REM 92.5 0.053 1.8E-06 46.4 2.4 23 156-178 23-45 (195)
453 2b6h_A ADP-ribosylation factor 92.5 0.047 1.6E-06 46.6 2.0 25 155-179 28-52 (192)
454 2a5j_A RAS-related protein RAB 92.5 0.07 2.4E-06 45.3 3.1 23 158-180 23-45 (191)
455 4dkx_A RAS-related protein RAB 92.5 0.07 2.4E-06 46.6 3.1 22 158-179 15-36 (216)
456 3oes_A GTPase rhebl1; small GT 92.4 0.07 2.4E-06 45.7 3.1 25 156-180 24-48 (201)
457 3reg_A RHO-like small GTPase; 92.4 0.072 2.4E-06 45.3 3.1 24 157-180 24-47 (194)
458 1ega_A Protein (GTP-binding pr 92.4 0.073 2.5E-06 49.1 3.3 24 156-179 8-31 (301)
459 2zts_A Putative uncharacterize 92.4 0.073 2.5E-06 47.3 3.3 49 156-208 30-78 (251)
460 2axn_A 6-phosphofructo-2-kinas 92.4 0.073 2.5E-06 53.2 3.5 25 156-180 35-59 (520)
461 2p5s_A RAS and EF-hand domain 92.4 0.072 2.5E-06 45.6 3.1 26 155-180 27-52 (199)
462 3tkl_A RAS-related protein RAB 92.4 0.073 2.5E-06 45.2 3.1 24 157-180 17-40 (196)
463 1u0l_A Probable GTPase ENGC; p 92.4 0.1 3.5E-06 48.2 4.3 34 144-180 160-193 (301)
464 2qu8_A Putative nucleolar GTP- 92.4 0.082 2.8E-06 46.4 3.5 24 156-179 29-52 (228)
465 2gk6_A Regulator of nonsense t 92.3 0.15 5.1E-06 52.3 5.8 62 142-209 184-245 (624)
466 1z06_A RAS-related protein RAB 92.3 0.075 2.6E-06 44.9 3.1 24 157-180 21-44 (189)
467 2o52_A RAS-related protein RAB 92.3 0.071 2.4E-06 45.7 2.9 24 157-180 26-49 (200)
468 2h17_A ADP-ribosylation factor 92.3 0.071 2.4E-06 44.8 2.9 23 157-179 22-44 (181)
469 2q3h_A RAS homolog gene family 92.3 0.073 2.5E-06 45.5 2.9 24 156-179 20-43 (201)
470 1x3s_A RAS-related protein RAB 92.2 0.078 2.7E-06 44.9 3.1 24 157-180 16-39 (195)
471 2bcg_Y Protein YP2, GTP-bindin 92.2 0.078 2.7E-06 45.6 3.1 24 157-180 9-32 (206)
472 2npi_A Protein CLP1; CLP1-PCF1 92.2 0.068 2.3E-06 52.4 2.9 26 155-180 137-162 (460)
473 3cwq_A Para family chromosome 92.2 0.17 5.8E-06 43.8 5.2 43 158-204 2-45 (209)
474 3ea0_A ATPase, para family; al 92.2 0.15 5.1E-06 45.2 5.0 41 155-198 3-45 (245)
475 2gf0_A GTP-binding protein DI- 92.1 0.08 2.7E-06 45.1 3.1 25 156-180 8-32 (199)
476 3k53_A Ferrous iron transport 92.1 0.091 3.1E-06 47.6 3.6 25 156-180 3-27 (271)
477 1m8p_A Sulfate adenylyltransfe 92.1 0.1 3.6E-06 52.6 4.3 25 156-180 396-420 (573)
478 2p67_A LAO/AO transport system 92.1 0.091 3.1E-06 49.4 3.7 27 154-180 54-80 (341)
479 4f4c_A Multidrug resistance pr 92.1 0.43 1.5E-05 53.4 9.5 26 155-180 1104-1129(1321)
480 2rcn_A Probable GTPase ENGC; Y 92.1 0.082 2.8E-06 49.8 3.3 24 157-180 216-239 (358)
481 3lxx_A GTPase IMAP family memb 92.1 0.08 2.8E-06 46.9 3.1 26 155-180 28-53 (239)
482 2g3y_A GTP-binding protein GEM 92.1 0.082 2.8E-06 46.0 3.0 22 157-178 38-59 (211)
483 2j1l_A RHO-related GTP-binding 92.0 0.078 2.7E-06 46.0 2.9 23 157-179 35-57 (214)
484 3zq6_A Putative arsenical pump 92.0 0.15 5.2E-06 47.5 5.0 46 156-204 14-59 (324)
485 2atx_A Small GTP binding prote 92.0 0.087 3E-06 44.7 3.1 24 157-180 19-42 (194)
486 3q3j_B RHO-related GTP-binding 92.0 0.098 3.4E-06 45.4 3.5 24 157-180 28-51 (214)
487 2fv8_A H6, RHO-related GTP-bin 92.0 0.086 3E-06 45.4 3.1 24 157-180 26-49 (207)
488 2il1_A RAB12; G-protein, GDP, 91.9 0.069 2.4E-06 45.4 2.4 24 157-180 27-50 (192)
489 4bas_A ADP-ribosylation factor 91.9 0.078 2.7E-06 45.2 2.8 25 156-180 17-41 (199)
490 2hup_A RAS-related protein RAB 91.9 0.089 3.1E-06 45.1 3.1 25 156-180 29-53 (201)
491 3cph_A RAS-related protein SEC 91.9 0.09 3.1E-06 45.4 3.1 25 156-180 20-44 (213)
492 2qag_B Septin-6, protein NEDD5 91.9 0.077 2.6E-06 51.2 2.9 21 159-179 45-65 (427)
493 3hdt_A Putative kinase; struct 91.9 0.099 3.4E-06 45.8 3.4 45 156-215 14-58 (223)
494 2j0v_A RAC-like GTP-binding pr 91.8 0.091 3.1E-06 45.4 3.1 24 157-180 10-33 (212)
495 2gco_A H9, RHO-related GTP-bin 91.8 0.093 3.2E-06 45.0 3.1 24 157-180 26-49 (201)
496 1ihu_A Arsenical pump-driving 91.8 0.15 5E-06 52.0 5.0 40 154-196 6-45 (589)
497 3ch4_B Pmkase, phosphomevalona 91.7 0.13 4.5E-06 44.0 3.8 26 155-180 10-35 (202)
498 2fu5_C RAS-related protein RAB 91.7 0.055 1.9E-06 45.4 1.5 23 157-179 9-31 (183)
499 2h57_A ADP-ribosylation factor 91.6 0.069 2.4E-06 45.2 2.1 25 156-180 21-45 (190)
500 1bif_A 6-phosphofructo-2-kinas 91.6 0.09 3.1E-06 51.9 3.1 25 156-180 39-63 (469)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.6e-49 Score=404.89 Aligned_cols=307 Identities=14% Similarity=0.166 Sum_probs=248.2
Q ss_pred ccchHHHHHHHHHHhcC---CCcEEEEEccCCCcHHHHHHHHHh--cccCCCCCCCeEEEEEeCCCC--CHHHHHHHHHH
Q 037625 138 VGLQSQLEQVWRCLAEE---SAGIIGLYGMGGVGKTTLLTHINN--KFLESPTNFDCVIWVVVSKDL--RLEKIQEDIGK 210 (467)
Q Consensus 138 vGr~~~~~~l~~~L~~~---~~~~i~I~G~~GiGKTtLa~~v~~--~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~ 210 (467)
+||+.++++|.++|..+ ..++|+|+||||+||||||+++|+ +. +...+|+.++|+++++.. +...++..|+.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHHHHH
Confidence 59999999999999754 578999999999999999999998 33 457899999999999885 78999999999
Q ss_pred HhcCCCC-----CCCCcCHHHHHHHHHHHhcCC-cEEEEeCCCCChhhhhhhccCCCCCCCCCceEEEecCChhhhhhcC
Q 037625 211 KIGLVGD-----SWKSRSVEEKALDIFRSLREK-RIVLLLDDIWERVDLTKVGVPLSGPKNTTSKVVFTTRFIGVCGSME 284 (467)
Q Consensus 211 ~l~~~~~-----~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iiiTtR~~~~~~~~~ 284 (467)
+++.... .....+...+...+.+.|.++ |+||||||||+...+ .+ ...+||+||||||+..++..++
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~------~~~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW------AQELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH------HHHTTCEEEEEESBGGGGGGCC
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc------cccCCCEEEEEcCCHHHHHHcC
Confidence 9976422 112334567789999999996 999999999997654 21 1227999999999999987765
Q ss_pred -CCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHHHHhccCCCHHHHHHHHHHHHhhh
Q 037625 285 -ADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIGRAMAYRKKAEQWRRAIEELRRSA 363 (467)
Q Consensus 285 -~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~~~~~~~~~~l~~l~~~~ 363 (467)
....|+|++|+.+|+++||.+.++... .++.+.+++.+|+++|+|+||||+++|+.|+.+ + |+.. +.+....
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~~l 355 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNNKL 355 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHHHH
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHHHh
Confidence 446799999999999999999987543 246788899999999999999999999999764 3 5443 4444443
Q ss_pred hcccCCccchhhhHHhchhcCCchhhhHHHH-----------HhhcCCCCcccchHHHHHHHHHh--CCccCCC-cccHH
Q 037625 364 SKFACLGKEVYPLLKFSYDSLQNDTIRSCFL-----------YCCLYPEDYGILKWDLIDCWIGE--GFFGESD-RSGAE 429 (467)
Q Consensus 364 ~~~~~~~~~~~~~l~~s~~~L~~~~~k~~~l-----------~~a~fp~~~~i~~~~li~~w~ae--g~~~~~~-~~~~~ 429 (467)
+... .+.+..++.+||+.||+ ++|.||+ |||+||+++.|+ +.+|+++ ||+...+ ....+
T Consensus 356 ~~~~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 356 ESRG--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHC--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hccc--HHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 3221 24788999999999998 8999999 999999999999 8999999 9998754 45566
Q ss_pred HHHHHHHHHHHHccCcccc---CCCeEEecHHHHHHHHHhC
Q 037625 430 NQGYDILDTLVRACLLEEL---EDDEVKMHDVIRDMALWIT 467 (467)
Q Consensus 430 ~~~~~~l~~L~~~~Ll~~~---~~~~~~~H~lvr~~a~~i~ 467 (467)
+.++ +|++|+++|||+.. +...|+|||+||+||++++
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~ 468 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVV 468 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTS
T ss_pred HHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHH
Confidence 7776 99999999999986 3457999999999999764
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2.5e-41 Score=351.37 Aligned_cols=286 Identities=16% Similarity=0.211 Sum_probs=229.2
Q ss_pred ccccchHHHHHHHHHHhc-CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCe-EEEEEeCCCCCHHHHHHHHHHHhc
Q 037625 136 TVVGLQSQLEQVWRCLAE-ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDC-VIWVVVSKDLRLEKIQEDIGKKIG 213 (467)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~-~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~ 213 (467)
..+||+.++++|.++|.. +..++|+|+||||+||||||++++++. ++..+|+. ++|+++++.++...++..++..++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 459999999999999986 567899999999999999999999864 44677886 999999999998888888877654
Q ss_pred CCCCC----C-----CCcCHHHHHHHHHHHh---cCCcEEEEeCCCCChhhhhhhccCCCCCCCCCceEEEecCChhhhh
Q 037625 214 LVGDS----W-----KSRSVEEKALDIFRSL---REKRIVLLLDDIWERVDLTKVGVPLSGPKNTTSKVVFTTRFIGVCG 281 (467)
Q Consensus 214 ~~~~~----~-----~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iiiTtR~~~~~~ 281 (467)
..... . ...+.+.....+.+.| .++|+||||||+|+...|+.+ ++||+||||||+..++.
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f--------~pGSRILVTTRd~~Va~ 279 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--------NLSCKILLTTRFKQVTD 279 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH--------HSSCCEEEECSCSHHHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh--------CCCeEEEEeccChHHHH
Confidence 22110 0 0123345566677665 679999999999998888765 16899999999999875
Q ss_pred hcCCCcccccC------CCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHHHHhccCC-CHHHHHH
Q 037625 282 SMEADRKFLVA------CLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIGRAMAYRK-KAEQWRR 354 (467)
Q Consensus 282 ~~~~~~~~~l~------~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~~-~~~~~~~ 354 (467)
.+.....|.++ +|+.+|+++||.+.++... .++..+| |+|+||||+++|+.|+.+. +...|+.
T Consensus 280 ~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~-------eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~ 349 (1221)
T 1vt4_I 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP-------QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKH 349 (1221)
T ss_dssp HHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCT-------TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred hcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCH-------HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhc
Confidence 44333456777 9999999999999864321 1223333 9999999999999999863 6777864
Q ss_pred HHHHHHhhhhcccCCccchhhhHHhchhcCCchhh-hHHHHHhhcCCCCcccchHHHHHHHHHhCCccCCCcccHHHHHH
Q 037625 355 AIEELRRSASKFACLGKEVYPLLKFSYDSLQNDTI-RSCFLYCCLYPEDYGILKWDLIDCWIGEGFFGESDRSGAENQGY 433 (467)
Q Consensus 355 ~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~-k~~~l~~a~fp~~~~i~~~~li~~w~aeg~~~~~~~~~~~~~~~ 433 (467)
. ..+.+..++.+||+.||+ +. |.||++||+||+++.|+...++.+|.++| ++.++
T Consensus 350 ~-------------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe 405 (1221)
T 1vt4_I 350 V-------------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVM 405 (1221)
T ss_dssp C-------------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHH
T ss_pred C-------------ChhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHH
Confidence 2 124789999999999999 78 99999999999999999999999998776 23578
Q ss_pred HHHHHHHHccCcccc-CCCeEEecHHHHHHHH
Q 037625 434 DILDTLVRACLLEEL-EDDEVKMHDVIRDMAL 464 (467)
Q Consensus 434 ~~l~~L~~~~Ll~~~-~~~~~~~H~lvr~~a~ 464 (467)
.+|++|+++|||+.. +..+|+||||+++++.
T Consensus 406 ~~L~eLvdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred HHHHHHHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence 899999999999986 4678999999998653
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.2e-40 Score=371.95 Aligned_cols=310 Identities=20% Similarity=0.253 Sum_probs=250.0
Q ss_pred CCCCCccccchHHHHHHHHHHh--cCCCcEEEEEccCCCcHHHHHHHHHhcccCCC-CCCCeEEEEEeCCCCC--HHHHH
Q 037625 131 RPTERTVVGLQSQLEQVWRCLA--EESAGIIGLYGMGGVGKTTLLTHINNKFLESP-TNFDCVIWVVVSKDLR--LEKIQ 205 (467)
Q Consensus 131 ~~~~~~~vGr~~~~~~l~~~L~--~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~~~~~~--~~~~~ 205 (467)
|+.++.|+||+.++++|.++|. ++..++|+|+||||+||||||++++++..... ..++.++|+++++..+ ....+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 3445679999999999999996 35678999999999999999999998842223 3567888999988543 34446
Q ss_pred HHHHHHhcCCCC--CCCCcCHHHHHHHHHHHhcCC--cEEEEeCCCCChhhhhhhccCCCCCCCCCceEEEecCChhhhh
Q 037625 206 EDIGKKIGLVGD--SWKSRSVEEKALDIFRSLREK--RIVLLLDDIWERVDLTKVGVPLSGPKNTTSKVVFTTRFIGVCG 281 (467)
Q Consensus 206 ~~i~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iiiTtR~~~~~~ 281 (467)
..++..+..... .....+.+.+...++..+.++ |+||||||+|+...|..+ ++||+||||||++.++.
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~--------~~~~~ilvTtR~~~~~~ 271 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF--------DNQCQILLTTRDKSVTD 271 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT--------CSSCEEEEEESSTTTTT
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh--------cCCCEEEEEcCCHHHHH
Confidence 667777664332 123456788889999999877 999999999998777653 57899999999999874
Q ss_pred h-cCCCcccccCC-CCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHHHHhccCCCHHHHHHHHHHH
Q 037625 282 S-MEADRKFLVAC-LSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIGRAMAYRKKAEQWRRAIEEL 359 (467)
Q Consensus 282 ~-~~~~~~~~l~~-L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~~~~~~~~~~l~~l 359 (467)
. +.....+++.+ |+.+|+++||...++... +.+.+.+.+|+++|+|+||||+++|++|+.+. ..|+.+++.+
T Consensus 272 ~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l 345 (1249)
T 3sfz_A 272 SVMGPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQL 345 (1249)
T ss_dssp TCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHH
T ss_pred hhcCCceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHH
Confidence 4 45667888986 999999999999886433 33346789999999999999999999998765 4699999888
Q ss_pred Hhhhhccc-----CCccchhhhHHhchhcCCchhhhHHHHHhhcCCCCcccchHHHHHHHHHhCCccCCCcccHHHHHHH
Q 037625 360 RRSASKFA-----CLGKEVYPLLKFSYDSLQNDTIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFFGESDRSGAENQGYD 434 (467)
Q Consensus 360 ~~~~~~~~-----~~~~~~~~~l~~s~~~L~~~~~k~~~l~~a~fp~~~~i~~~~li~~w~aeg~~~~~~~~~~~~~~~~ 434 (467)
.......- ...+++..++.+||+.||+ +.|.||++||+||+++.|+...++.+|.++ ++.+++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~ 413 (1249)
T 3sfz_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVED 413 (1249)
T ss_dssp HSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHH
T ss_pred hhhhhhhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHH
Confidence 76543211 1113689999999999999 899999999999999999999999999433 577889
Q ss_pred HHHHHHHccCccccCCC---eEEecHHHHHHHHHh
Q 037625 435 ILDTLVRACLLEELEDD---EVKMHDVIRDMALWI 466 (467)
Q Consensus 435 ~l~~L~~~~Ll~~~~~~---~~~~H~lvr~~a~~i 466 (467)
+|++|+++|||+....+ .|+||++||+||+..
T Consensus 414 ~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~ 448 (1249)
T 3sfz_A 414 ILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEK 448 (1249)
T ss_dssp HHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHH
T ss_pred HHHHHHhccceEEecCCCceEEEecHHHHHHHHhh
Confidence 99999999999986333 599999999999875
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=2.7e-38 Score=327.75 Aligned_cols=307 Identities=21% Similarity=0.279 Sum_probs=237.1
Q ss_pred CCCCCccccchHHHHHHHHHHhc--CCCcEEEEEccCCCcHHHHHHHHHhcccCC-CCCC-CeEEEEEeCCCCCHHHHHH
Q 037625 131 RPTERTVVGLQSQLEQVWRCLAE--ESAGIIGLYGMGGVGKTTLLTHINNKFLES-PTNF-DCVIWVVVSKDLRLEKIQE 206 (467)
Q Consensus 131 ~~~~~~~vGr~~~~~~l~~~L~~--~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~~ 206 (467)
|+.++.||||+.++++|.++|.. +..++|+|+||||+||||||.+++++. .. ...| +.++|++++.. +...++.
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCC-chHHHHH
Confidence 34456799999999999999973 467899999999999999999999875 32 4567 58999999876 3334444
Q ss_pred HH---HHHhcCCC--CCCCCcCHHHHHHHHHHHhcC--CcEEEEeCCCCChhhhhhhccCCCCCCCCCceEEEecCChhh
Q 037625 207 DI---GKKIGLVG--DSWKSRSVEEKALDIFRSLRE--KRIVLLLDDIWERVDLTKVGVPLSGPKNTTSKVVFTTRFIGV 279 (467)
Q Consensus 207 ~i---~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iiiTtR~~~~ 279 (467)
.+ +..++... ......+.......+...+.+ +++||||||+|+...+..+ +++++||||||+..+
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l--------~~~~~ilvTsR~~~~ 269 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF--------DSQCQILLTTRDKSV 269 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT--------CSSCEEEEEESCGGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh--------cCCCeEEEECCCcHH
Confidence 43 34444211 112345667788888888865 7899999999987665532 468999999999988
Q ss_pred hhhcCCCccccc---CCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHHHHhccCCCHHHHHHHH
Q 037625 280 CGSMEADRKFLV---ACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIGRAMAYRKKAEQWRRAI 356 (467)
Q Consensus 280 ~~~~~~~~~~~l---~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~~~~~~~~~~l 356 (467)
+..+. ...+++ ++|+.+|+++||...++... ....+.+.+|+++|+|+||||.++|+.++.+. ..|..++
T Consensus 270 ~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l 342 (591)
T 1z6t_A 270 TDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYL 342 (591)
T ss_dssp GTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHH
T ss_pred HHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHH
Confidence 76543 334444 58999999999999987532 12235688999999999999999999998754 3688888
Q ss_pred HHHHhhhhc-----ccCCccchhhhHHhchhcCCchhhhHHHHHhhcCCCCcccchHHHHHHHHHhCCccCCCcccHHHH
Q 037625 357 EELRRSASK-----FACLGKEVYPLLKFSYDSLQNDTIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFFGESDRSGAENQ 431 (467)
Q Consensus 357 ~~l~~~~~~-----~~~~~~~~~~~l~~s~~~L~~~~~k~~~l~~a~fp~~~~i~~~~li~~w~aeg~~~~~~~~~~~~~ 431 (467)
+.+...... ......++..++..||+.||+ +.|.||+++|+||+++.|+...+..+|.++ .+.
T Consensus 343 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~ 410 (591)
T 1z6t_A 343 KQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEE 410 (591)
T ss_dssp HHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHH
T ss_pred HHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccC-----------HHH
Confidence 888754321 111234788999999999999 899999999999999999999999999322 356
Q ss_pred HHHHHHHHHHccCcccc---CCCeEEecHHHHHHHHHh
Q 037625 432 GYDILDTLVRACLLEEL---EDDEVKMHDVIRDMALWI 466 (467)
Q Consensus 432 ~~~~l~~L~~~~Ll~~~---~~~~~~~H~lvr~~a~~i 466 (467)
+.+++++|+++|||+.. ...+|+||++||+|++..
T Consensus 411 ~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 411 VEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 78899999999999865 234799999999999764
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.82 E-value=1.2e-18 Score=168.21 Aligned_cols=292 Identities=14% Similarity=0.090 Sum_probs=181.6
Q ss_pred CCCccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCC------CHHHHHH
Q 037625 133 TERTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL------RLEKIQE 206 (467)
Q Consensus 133 ~~~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~------~~~~~~~ 206 (467)
.+..|+||+.+++.|.+++..+ +++.|+|++|+|||||++++++.. . .+|+++.... +...++.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHHH
Confidence 3467999999999999998764 799999999999999999999875 1 6777765432 5566666
Q ss_pred HHHHHhcCC--------------C--CCCCCcCHHHHHHHHHHHhcC-CcEEEEeCCCCChhh---------hhhhccCC
Q 037625 207 DIGKKIGLV--------------G--DSWKSRSVEEKALDIFRSLRE-KRIVLLLDDIWERVD---------LTKVGVPL 260 (467)
Q Consensus 207 ~i~~~l~~~--------------~--~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~---------~~~~~~~l 260 (467)
.+...+... + ......+..+....+.+.... ++++|||||++.... +..+....
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~ 159 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY 159 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH
Confidence 666654320 0 000123455566666555543 399999999975321 22222221
Q ss_pred CCCCCCCceEEEecCChhhhh-h----------cCC-CcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHH
Q 037625 261 SGPKNTTSKVVFTTRFIGVCG-S----------MEA-DRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANE 328 (467)
Q Consensus 261 ~~~~~~~s~iiiTtR~~~~~~-~----------~~~-~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~ 328 (467)
....+..+|+|++...... . .+. ...+++.+|+.+|+.+++.+.+.......+ .+.+..|+..
T Consensus 160 --~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~---~~~~~~i~~~ 234 (350)
T 2qen_A 160 --DSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP---ENEIEEAVEL 234 (350)
T ss_dssp --HHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHH
T ss_pred --HhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Confidence 1124788999988764311 1 111 236889999999999999886543221122 3567899999
Q ss_pred hCCCcHHHHHHHHHhccCCCHHHHHHHHHHHHhhhhcccCCccchhhhHHhchhcC---CchhhhHHHHHhhcCCCCccc
Q 037625 329 CGGLPLALITIGRAMAYRKKAEQWRRAIEELRRSASKFACLGKEVYPLLKFSYDSL---QNDTIRSCFLYCCLYPEDYGI 405 (467)
Q Consensus 329 ~~G~Plai~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L---~~~~~k~~~l~~a~fp~~~~i 405 (467)
|+|+|+++..++..+....+...+. ..+... +...+.-.+..+ ++ ..+..+..+|. . . .
T Consensus 235 tgG~P~~l~~~~~~~~~~~~~~~~~---~~~~~~----------~~~~~~~~l~~l~~~~~-~~~~~l~~la~-g-~--~ 296 (350)
T 2qen_A 235 LDGIPGWLVVFGVEYLRNGDFGRAM---KRTLEV----------AKGLIMGELEELRRRSP-RYVDILRAIAL-G-Y--N 296 (350)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHHHHH---HHHHHH----------HHHHHHHHHHHHHHHCH-HHHHHHHHHHT-T-C--C
T ss_pred hCCCHHHHHHHHHHHhccccHhHHH---HHHHHH----------HHHHHHHHHHHHHhCCh-hHHHHHHHHHh-C-C--C
Confidence 9999999999887653322222221 111111 111111111222 56 78889988887 2 2 3
Q ss_pred chHHHHHHHHHhCCccCCCcccHHHHHHHHHHHHHHccCccccCCCeEEe-cHHHHHHHH
Q 037625 406 LKWDLIDCWIGEGFFGESDRSGAENQGYDILDTLVRACLLEELEDDEVKM-HDVIRDMAL 464 (467)
Q Consensus 406 ~~~~li~~w~aeg~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~-H~lvr~~a~ 464 (467)
....+....... .- .........+++.|++.+||... .+.|++ |++++++.+
T Consensus 297 ~~~~l~~~~~~~-~~-----~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 297 RWSLIRDYLAVK-GT-----KIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVLR 349 (350)
T ss_dssp SHHHHHHHHHHT-TC-----CCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHHT
T ss_pred CHHHHHHHHHHH-hC-----CCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHHc
Confidence 444444332111 10 11235667889999999999875 456665 899998864
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.80 E-value=4.3e-18 Score=164.66 Aligned_cols=292 Identities=15% Similarity=0.137 Sum_probs=173.4
Q ss_pred CCccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCC-----CCHHHHHHHH
Q 037625 134 ERTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-----LRLEKIQEDI 208 (467)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~i 208 (467)
++.|+||+.+++.|.+ +.. +++.|+|++|+|||||++.+++.. .. ..+|+++... .+...++..+
T Consensus 12 ~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL---NL---PYIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH---TC---CEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred HHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc---CC---CEEEEEchhhccccCCCHHHHHHHH
Confidence 4679999999999999 755 699999999999999999999886 22 2578887643 3445555554
Q ss_pred HHHhcC------------------CCCCC---------CCcCHHHHHHHHHHHhcCCcEEEEeCCCCChh-----hh-hh
Q 037625 209 GKKIGL------------------VGDSW---------KSRSVEEKALDIFRSLREKRIVLLLDDIWERV-----DL-TK 255 (467)
Q Consensus 209 ~~~l~~------------------~~~~~---------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----~~-~~ 255 (467)
...+.. ..+.. ...........+.+... ++++|||||++... .+ ..
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHH
Confidence 443310 00000 01233444444443322 49999999996421 22 12
Q ss_pred hccCCCCCCCCCceEEEecCChhhhh-h---------c-CC-CcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHH
Q 037625 256 VGVPLSGPKNTTSKVVFTTRFIGVCG-S---------M-EA-DRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQ 323 (467)
Q Consensus 256 ~~~~l~~~~~~~s~iiiTtR~~~~~~-~---------~-~~-~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~ 323 (467)
+.... ....+..+|+|++...... . . +. ...+.+.+|+.+|+.+++...+........+ ..
T Consensus 161 l~~~~--~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~-----~~ 233 (357)
T 2fna_A 161 LAYAY--DNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD-----YE 233 (357)
T ss_dssp HHHHH--HHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC-----HH
T ss_pred HHHHH--HcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc-----HH
Confidence 21111 1124788999999765321 1 1 11 2468899999999999998865321111111 17
Q ss_pred HHHHHhCCCcHHHHHHHHHhccCCCHHHHHH-HHHHHHhhhhcccCCccchhhhHHhchhcCCchhhhHHHHHhhcCCCC
Q 037625 324 IVANECGGLPLALITIGRAMAYRKKAEQWRR-AIEELRRSASKFACLGKEVYPLLKFSYDSLQNDTIRSCFLYCCLYPED 402 (467)
Q Consensus 324 ~I~~~~~G~Plai~~~~~~l~~~~~~~~~~~-~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~k~~~l~~a~fp~~ 402 (467)
.|+..|+|+|+++..++..+....+...|.. ..+....... ..+...+.-. ..+++ ..+..+..+|+ ..
T Consensus 234 ~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~-~~l~~-~~~~~l~~la~-g~- 303 (357)
T 2fna_A 234 VVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLIL------KEFENFLHGR-EIARK-RYLNIMRTLSK-CG- 303 (357)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH------HHHHHHHTTC-GGGHH-HHHHHHHHHTT-CB-
T ss_pred HHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHHH------HHHHHHhhcc-ccccH-HHHHHHHHHHc-CC-
Confidence 8999999999999999877654333333321 1111100000 0111111000 15777 78899998888 21
Q ss_pred cccchHHHHHHHH-HhCCccCCCcccHHHHHHHHHHHHHHccCccccCCCeEE-ecHHHHHHH
Q 037625 403 YGILKWDLIDCWI-GEGFFGESDRSGAENQGYDILDTLVRACLLEELEDDEVK-MHDVIRDMA 463 (467)
Q Consensus 403 ~~i~~~~li~~w~-aeg~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~-~H~lvr~~a 463 (467)
....+....- ..|. .........+++.|++.+||...+ +.|+ -|++++++.
T Consensus 304 ---~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 304 ---KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp ---CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred ---CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 3333332110 1121 012356678899999999998853 5666 489999874
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.78 E-value=2.9e-18 Score=169.34 Aligned_cols=306 Identities=12% Similarity=0.060 Sum_probs=183.3
Q ss_pred CccccchHHHHHHHHHH-hc------CCCcEEEE--EccCCCcHHHHHHHHHhcccCC--CCCC-CeEEEEEeCCCCCHH
Q 037625 135 RTVVGLQSQLEQVWRCL-AE------ESAGIIGL--YGMGGVGKTTLLTHINNKFLES--PTNF-DCVIWVVVSKDLRLE 202 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L-~~------~~~~~i~I--~G~~GiGKTtLa~~v~~~~~~~--~~~f-~~~~wv~~~~~~~~~ 202 (467)
..|+||+.+++.|.+++ .. ...+.+.| +|++|+|||||++.+++..... ...+ ..++|+++....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 67999999999999988 42 24567778 9999999999999999876210 0012 246788877777888
Q ss_pred HHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhc--CCcEEEEeCCCCCh--------hhhhhhccCCCCCC--C--CCc
Q 037625 203 KIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLR--EKRIVLLLDDIWER--------VDLTKVGVPLSGPK--N--TTS 268 (467)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~--------~~~~~~~~~l~~~~--~--~~s 268 (467)
.++..++.+++...+. ...+.......+...+. +++++|||||++.. ..+..+...+.... + .+.
T Consensus 102 ~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQV-RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHTCCCCC-TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 9999999998754321 22345566666666664 67999999999752 22332222221111 2 445
Q ss_pred eEEEecCChhhhhhc---------CCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhC------CCc
Q 037625 269 KVVFTTRFIGVCGSM---------EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECG------GLP 333 (467)
Q Consensus 269 ~iiiTtR~~~~~~~~---------~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~------G~P 333 (467)
.+|+||+...+...+ .....+.+.+|+.++++++|...+...... ...-.+....|++.|+ |+|
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~G~p 259 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD-TVWEPRHLELISDVYGEDKGGDGSA 259 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT-TSCCHHHHHHHHHHHCGGGTSCCCH
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC-CCCChHHHHHHHHHHHHhccCCCcH
Confidence 688888755432111 112238999999999999998764311100 0111356788999999 999
Q ss_pred HHHHHHHHHhc-----cC---CCHHHHHHHHHHHHhhhhcccCCccchhhhHHhchhcCCchhhhHHHHHhhcCC--CCc
Q 037625 334 LALITIGRAMA-----YR---KKAEQWRRAIEELRRSASKFACLGKEVYPLLKFSYDSLQNDTIRSCFLYCCLYP--EDY 403 (467)
Q Consensus 334 lai~~~~~~l~-----~~---~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~k~~~l~~a~fp--~~~ 403 (467)
..+..++.... .. -+.+.+...+..... ...+.-++..||+ ..+.++..++.+. .+.
T Consensus 260 ~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~~l~~l~~-~~~~~l~aia~l~~~~~~ 326 (412)
T 1w5s_A 260 RRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------------ASIQTHELEALSI-HELIILRLIAEATLGGME 326 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSCH-HHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------------cchHHHHHHcCCH-HHHHHHHHHHHHHhcCCC
Confidence 76665543321 11 123333332221100 2334456778998 7889888888653 223
Q ss_pred ccchHHHHHHHH--H-hCCccCCCcccHHHHHHHHHHHHHHccCcccc-----CCCeEEecHH
Q 037625 404 GILKWDLIDCWI--G-EGFFGESDRSGAENQGYDILDTLVRACLLEEL-----EDDEVKMHDV 458 (467)
Q Consensus 404 ~i~~~~li~~w~--a-eg~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~~-----~~~~~~~H~l 458 (467)
.+....+...+. + . .... ..........+++.|.+.+||... ..+.|++|.+
T Consensus 327 ~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l 386 (412)
T 1w5s_A 327 WINAGLLRQRYEDASLT-MYNV--KPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRL 386 (412)
T ss_dssp SBCHHHHHHHHHHHHHH-HSCC--CCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEE
T ss_pred CccHHHHHHHHHHHHHh-hcCC--CCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEe
Confidence 455555444331 1 1 1111 112245567889999999999874 2334555544
No 8
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.64 E-value=4.8e-14 Score=137.67 Aligned_cols=288 Identities=15% Similarity=0.015 Sum_probs=179.8
Q ss_pred CccccchHHHHHHHHHHhc----CCCcEEEEEccCCCcHHHHHHHHHhcccCC----CCC-CCeEEEEEeCCCC-CHHHH
Q 037625 135 RTVVGLQSQLEQVWRCLAE----ESAGIIGLYGMGGVGKTTLLTHINNKFLES----PTN-FDCVIWVVVSKDL-RLEKI 204 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~----~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~----~~~-f~~~~wv~~~~~~-~~~~~ 204 (467)
..++||+++++.+.+++.. +..+.+.|+|++|+||||||+.+++..... ... ....+|+++.... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 6799999999999887753 345689999999999999999999875111 011 3457788877766 88888
Q ss_pred HHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCChhh---hhh-hccCCCCCCCCCceEEEecCChhhh
Q 037625 205 QEDIGKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWERVD---LTK-VGVPLSGPKNTTSKVVFTTRFIGVC 280 (467)
Q Consensus 205 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~-~~~~l~~~~~~~s~iiiTtR~~~~~ 280 (467)
+..++..+..........+.......+...+..++.+|||||++.... .+. +...+ ... .+..+|+||+.....
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~-~~~-~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLL-RSD-ANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHH-TSS-SCEEEEEECSSTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHh-cCC-cceEEEEEECCCchH
Confidence 888888873222222334456677778888877666999999975321 122 11111 112 678899998865321
Q ss_pred hhc------CCCcccccCCCCHHHHHHHHHHHhCC--CCCCCChhHHHHHHHHHHHhC---CCcH-HHHHHHHHh--c--
Q 037625 281 GSM------EADRKFLVACLSEKDAWELFREKVGE--ETLKSDHDIAELAQIVANECG---GLPL-ALITIGRAM--A-- 344 (467)
Q Consensus 281 ~~~------~~~~~~~l~~L~~~e~~~lf~~~~~~--~~~~~~~~~~~~~~~I~~~~~---G~Pl-ai~~~~~~l--~-- 344 (467)
..+ .....+.+++++.++..++|...+.. .....++ +....+++.|+ |+|. ++..+-... .
T Consensus 178 ~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~ 254 (384)
T 2qby_B 178 DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLASG 254 (384)
T ss_dssp TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTS
T ss_pred hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcC
Confidence 110 11238899999999999999987531 1111222 45667778887 9887 333333222 2
Q ss_pred -cCCCHHHHHHHHHHHHhhhhcccCCccchhhhHHhchhcCCchhhhHHHHHhhcCCCC-cccchHHHHHHHHHhCCccC
Q 037625 345 -YRKKAEQWRRAIEELRRSASKFACLGKEVYPLLKFSYDSLQNDTIRSCFLYCCLYPED-YGILKWDLIDCWIGEGFFGE 422 (467)
Q Consensus 345 -~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~k~~~l~~a~fp~~-~~i~~~~li~~w~aeg~~~~ 422 (467)
..-+.+.+..+++.... ..+..+++.|++ ..+..+..++. ... ..+. .......-..| ..
T Consensus 255 ~~~i~~~~v~~~~~~~~~-------------~~~~~~~~~l~~-~~~~~l~al~~-~~~~~~~~-~~~~~~~~~~g-~~- 316 (384)
T 2qby_B 255 GGIIRKEHVDKAIVDYEQ-------------ERLIEAVKALPF-HYKLALRSLIE-SEDVMSAH-KMYTDLCNKFK-QK- 316 (384)
T ss_dssp SSCCCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHHT-CCBHHHHH-HHHHHHHHHTT-CC-
T ss_pred CCccCHHHHHHHHHHHhc-------------chHHHHHHcCCH-HHHHHHHHHHH-hcccChHH-HHHHHHHHHcC-CC-
Confidence 12356777766655432 234556778888 67777666665 211 1111 11111111122 11
Q ss_pred CCcccHHHHHHHHHHHHHHccCcccc
Q 037625 423 SDRSGAENQGYDILDTLVRACLLEEL 448 (467)
Q Consensus 423 ~~~~~~~~~~~~~l~~L~~~~Ll~~~ 448 (467)
.........+++.|...|+++..
T Consensus 317 ---~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 317 ---PLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ---CCCHHHHHHHHHHHHhCCCEEEE
Confidence 22346677889999999999874
No 9
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.63 E-value=4.3e-14 Score=138.02 Aligned_cols=291 Identities=14% Similarity=0.103 Sum_probs=180.5
Q ss_pred CccccchHHHHHHHHHHhc----CCCcEEEEEccCCCcHHHHHHHHHhcccCCC---CCCCeEEEEEeCCCCCHHHHHHH
Q 037625 135 RTVVGLQSQLEQVWRCLAE----ESAGIIGLYGMGGVGKTTLLTHINNKFLESP---TNFDCVIWVVVSKDLRLEKIQED 207 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~----~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~ 207 (467)
+.++||+.+++.+..++.. ...+.+.|+|++|+||||||+.+++...... +.-...+|+++....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 6799999999999998853 4566899999999999999999998761110 11235678888888888999999
Q ss_pred HHHHhcCCCCCCCCcCHHHHHHHHHHHhc--CCcEEEEeCCCCChh----h---hhhhccCCCCCC-CCCceEEEecCCh
Q 037625 208 IGKKIGLVGDSWKSRSVEEKALDIFRSLR--EKRIVLLLDDIWERV----D---LTKVGVPLSGPK-NTTSKVVFTTRFI 277 (467)
Q Consensus 208 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~----~---~~~~~~~l~~~~-~~~s~iiiTtR~~ 277 (467)
++.+++...+. ...+.......+...+. +++.+|||||++... . +..+........ ..+..+|+||+..
T Consensus 99 l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 99 IAEAVGVRVPF-TGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHSCCCCS-SCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 99998754322 33445666677777763 468999999997432 1 222222110111 4566778787765
Q ss_pred hhhhh-----cC-CC-cccccCCCCHHHHHHHHHHHhCC--CCCCCChhHHHHHHHHHHHhC---CCcHHH-HHHHHHhc
Q 037625 278 GVCGS-----ME-AD-RKFLVACLSEKDAWELFREKVGE--ETLKSDHDIAELAQIVANECG---GLPLAL-ITIGRAMA 344 (467)
Q Consensus 278 ~~~~~-----~~-~~-~~~~l~~L~~~e~~~lf~~~~~~--~~~~~~~~~~~~~~~I~~~~~---G~Plai-~~~~~~l~ 344 (467)
..... .. .. ..+.+++++.++..+++...+.. .....++ +....+++.++ |+|..+ ..+..+..
T Consensus 178 ~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 178 GFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAGE 254 (387)
T ss_dssp TTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 32111 11 11 47889999999999999987542 1111122 34667888887 999433 33322221
Q ss_pred -----c--CCCHHHHHHHHHHHHhhhhcccCCccchhhhHHhchhcCCchhhhHHHHHhh-cCCCCcccchHHHHHHHH-
Q 037625 345 -----Y--RKKAEQWRRAIEELRRSASKFACLGKEVYPLLKFSYDSLQNDTIRSCFLYCC-LYPEDYGILKWDLIDCWI- 415 (467)
Q Consensus 345 -----~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~k~~~l~~a-~fp~~~~i~~~~li~~w~- 415 (467)
+ .-+.+.+..++..... ..+.-++..|++ ..+..+..++ ++.....+....+.+...
T Consensus 255 ~a~~~~~~~i~~~~v~~a~~~~~~-------------~~~~~~~~~l~~-~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
T 2v1u_A 255 IAERRREERVRREHVYSARAEIER-------------DRVSEVVRTLPL-HAKLVLLSIMMLEDGGRPASTGEIYERYKE 320 (387)
T ss_dssp HHHHTTCSCBCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHHHHSSSSCCEEHHHHHHHHHH
T ss_pred HHHHcCCCCcCHHHHHHHHHHHhh-------------chHHHHHHcCCH-HHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 1 1256666665554422 134456778888 6666665555 443223455554433321
Q ss_pred ---HhCCccCCCcccHHHHHHHHHHHHHHccCcccc
Q 037625 416 ---GEGFFGESDRSGAENQGYDILDTLVRACLLEEL 448 (467)
Q Consensus 416 ---aeg~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~~ 448 (467)
..| . ..........+++.|...|+++..
T Consensus 321 ~~~~~~-~----~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 321 LTSTLG-L----EHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHTT-C----CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhcC-C----CCCCHHHHHHHHHHHHhCCCeEEE
Confidence 112 1 122356777899999999999984
No 10
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.62 E-value=8.9e-14 Score=135.96 Aligned_cols=290 Identities=15% Similarity=0.105 Sum_probs=183.7
Q ss_pred CccccchHHHHHHHHHHhc----CCCc--EEEEEccCCCcHHHHHHHHHhcccCCCCC-CCeEEEEEeCCCCCHHHHHHH
Q 037625 135 RTVVGLQSQLEQVWRCLAE----ESAG--IIGLYGMGGVGKTTLLTHINNKFLESPTN-FDCVIWVVVSKDLRLEKIQED 207 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~----~~~~--~i~I~G~~GiGKTtLa~~v~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~ 207 (467)
+.++||+.+++.+..++.. .... .+.|+|++|+|||||++.+++.. ... -..++|++++...+...++..
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY---KDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH---TTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH---hhhcCeeEEEEeCccCCCHHHHHHH
Confidence 5799999999999998874 2334 89999999999999999999887 222 235678887787788899999
Q ss_pred HHHHhcCCCCCCCCcCHHHHHHHHHHHhc--CCcEEEEeCCCCC--hhhhhhhccCCCCCCC---CCceEEEecCChhhh
Q 037625 208 IGKKIGLVGDSWKSRSVEEKALDIFRSLR--EKRIVLLLDDIWE--RVDLTKVGVPLSGPKN---TTSKVVFTTRFIGVC 280 (467)
Q Consensus 208 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~---~~s~iiiTtR~~~~~ 280 (467)
++..++...+. ...+.......+...+. +++.+|||||++. ...+..+...+..... .+..+|++|+.....
T Consensus 94 l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 94 IARSLNIPFPR-RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHHHTTCCCCS-SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred HHHHhCccCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 99888754321 23345566666666653 5689999999974 3344444333311112 467888888766432
Q ss_pred hhcC-------CCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHh---------CCCcHHHHHHHHHhc
Q 037625 281 GSME-------ADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANEC---------GGLPLALITIGRAMA 344 (467)
Q Consensus 281 ~~~~-------~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~---------~G~Plai~~~~~~l~ 344 (467)
..+. ....+.+.+++.++..+++...+..... ...--.+....|++.+ +|+|..+..+.....
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA-EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC-TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 2211 1236899999999999999987642110 0011135677899999 798865554443321
Q ss_pred c-----C---CCHHHHHHHHHHHHhhhhcccCCccchhhhHHhchhcCCchhhhHHHHHhhcCC---CCcccchHHHHHH
Q 037625 345 Y-----R---KKAEQWRRAIEELRRSASKFACLGKEVYPLLKFSYDSLQNDTIRSCFLYCCLYP---EDYGILKWDLIDC 413 (467)
Q Consensus 345 ~-----~---~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~k~~~l~~a~fp---~~~~i~~~~li~~ 413 (467)
. + -+.+....+..... ...+.-.+..|++ +.+.++..++.+. .+..+....+...
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~-------------~~~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~~ 317 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVL-------------FGISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEES 317 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHS-------------CCCCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHh-------------hhhHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHHH
Confidence 1 1 23333333322211 1223344677888 7788777777653 2214555555554
Q ss_pred HHH----hCCccCCCcccHHHHHHHHHHHHHHccCcccc
Q 037625 414 WIG----EGFFGESDRSGAENQGYDILDTLVRACLLEEL 448 (467)
Q Consensus 414 w~a----eg~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~~ 448 (467)
+-. .|. . ........++++.|...++|...
T Consensus 318 ~~~~~~~~~~-~----~~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 318 YKIVCEEYGE-R----PRVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHHHHHTTC-C----CCCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHcCC-C----CCCHHHHHHHHHHHHhCCCeEEe
Confidence 422 121 1 11245677899999999999884
No 11
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.62 E-value=1.3e-15 Score=120.25 Aligned_cols=83 Identities=11% Similarity=0.125 Sum_probs=73.3
Q ss_pred cccchhhHhhHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHH
Q 037625 7 IPCDGAFFNRCLDCFLGEAAYISNLQDNLDALDTELGNLIAKKNDVMRRVVDAERQQ-MRRLDRVQRWVSRVDAVKTGAD 85 (467)
Q Consensus 7 ~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~ae~~~-~~~~~~~~~Wl~~l~~~~~~~e 85 (467)
|+++.+ ++||.+++.+|+.++.++++++++|+++|++|+++|.+ ++.+. ...++.++.|+++||+++||+|
T Consensus 1 a~v~~l-l~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~~~~~~d~~vk~W~~~vrdlaYD~E 72 (115)
T 3qfl_A 1 AAISNL-IPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEVPREQLDSQDKLWADEVRELSYVIE 72 (115)
T ss_dssp CTTCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCHHHHHHHHHHHHHHHHHH
Confidence 467888 99999999999999999999999999999999999887 44432 2347899999999999999999
Q ss_pred HHHHhhhhhhhh
Q 037625 86 ELIRDGSQEIDK 97 (467)
Q Consensus 86 d~~d~~~~~~~~ 97 (467)
||+|+|.++...
T Consensus 73 D~iD~f~~~~~~ 84 (115)
T 3qfl_A 73 DVVDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 999999988753
No 12
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.61 E-value=1.6e-14 Score=140.97 Aligned_cols=292 Identities=14% Similarity=0.123 Sum_probs=175.9
Q ss_pred CCccccchHHHHHHHHHHhc----CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 037625 134 ERTVVGLQSQLEQVWRCLAE----ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIG 209 (467)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~~----~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 209 (467)
+..|+||+.+++.+.+++.. +..+.+.|+|++|+|||||++.+++............+|+++....+...++..++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 36799999999999998873 45668999999999999999999987621111023567887776667788888888
Q ss_pred HHhcCCCCCCCCcCHHHHHHHHHHHhc--CCcEEEEeCCCCCh------hhhhhhccCCCCCCCCCceEEEecCChhhhh
Q 037625 210 KKIGLVGDSWKSRSVEEKALDIFRSLR--EKRIVLLLDDIWER------VDLTKVGVPLSGPKNTTSKVVFTTRFIGVCG 281 (467)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~------~~~~~~~~~l~~~~~~~s~iiiTtR~~~~~~ 281 (467)
..++..... ...+..+....+.+.+. +++.+||||+++.. ..+..+...+......+..+|+||+......
T Consensus 99 ~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 99 ESLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVD 177 (386)
T ss_dssp TTTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGG
T ss_pred HHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHh
Confidence 877654321 23345566666666664 45899999999642 2222332222011234667788887664322
Q ss_pred hcC-------CCcccccCCCCHHHHHHHHHHHhCCC--CCCCChhHHHHHHHHHHHhC---CCcHHHHHHHHHhc-----
Q 037625 282 SME-------ADRKFLVACLSEKDAWELFREKVGEE--TLKSDHDIAELAQIVANECG---GLPLALITIGRAMA----- 344 (467)
Q Consensus 282 ~~~-------~~~~~~l~~L~~~e~~~lf~~~~~~~--~~~~~~~~~~~~~~I~~~~~---G~Plai~~~~~~l~----- 344 (467)
.+. ....+.+++++.++..+++.+.+... ....+ .+....+++.++ |+|..+..+.....
T Consensus 178 ~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~ 254 (386)
T 2qby_A 178 LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEIAER 254 (386)
T ss_dssp GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 211 11478999999999999999865311 11122 355667777777 99985443332221
Q ss_pred -c--CCCHHHHHHHHHHHHhhhhcccCCccchhhhHHhchhcCCchhhhHHHHHhhcCCC-C-cccchHHHHHHH--HH-
Q 037625 345 -Y--RKKAEQWRRAIEELRRSASKFACLGKEVYPLLKFSYDSLQNDTIRSCFLYCCLYPE-D-YGILKWDLIDCW--IG- 416 (467)
Q Consensus 345 -~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~k~~~l~~a~fp~-~-~~i~~~~li~~w--~a- 416 (467)
+ .-+.+.+..++..... ..+.-.+..+|+ ..+..+..++.+.+ + ..+....+.+.. ++
T Consensus 255 ~~~~~i~~~~v~~a~~~~~~-------------~~~~~~~~~l~~-~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~ 320 (386)
T 2qby_A 255 MKDTKVKEEYVYMAKEEIER-------------DRVRDIILTLPF-HSKLVLMAVVSISSEENVVSTTGAVYETYLNICK 320 (386)
T ss_dssp TTCSSCCHHHHHHHHHHHHH-------------HHHHHHHHTSCH-HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHH
T ss_pred cCCCccCHHHHHHHHHHHhh-------------chHHHHHHcCCH-HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHH
Confidence 1 1245555555544321 234455677887 66666666653211 1 223333332211 11
Q ss_pred -hCCccCCCcccHHHHHHHHHHHHHHccCcccc
Q 037625 417 -EGFFGESDRSGAENQGYDILDTLVRACLLEEL 448 (467)
Q Consensus 417 -eg~~~~~~~~~~~~~~~~~l~~L~~~~Ll~~~ 448 (467)
.| +. .........+++.|...|++...
T Consensus 321 ~~g-~~----~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 321 KLG-VE----AVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HHT-CC----CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred hcC-CC----CCCHHHHHHHHHHHHhCCCEEEE
Confidence 12 11 12245667889999999999763
No 13
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.48 E-value=8.9e-13 Score=119.81 Aligned_cols=197 Identities=16% Similarity=0.149 Sum_probs=117.5
Q ss_pred CccccchHHHHHHHHHHhcCC-CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 037625 135 RTVVGLQSQLEQVWRCLAEES-AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIG 213 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~-~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 213 (467)
..++||+..++.|..++..+. .+.+.|+|++|+||||||+.+++... ....+.. ........ ...+.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~-~~~~~~~------~~~~~~~~-~~~~~~~~~ 94 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN-CETGITA------TPCGVCDN-CREIEQGRF 94 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH-CTTCSCS------SCCSCSHH-HHHHHTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCCC------CCCcccHH-HHHHhccCC
Confidence 468999999999999998654 35789999999999999999998762 1111100 00000000 001110000
Q ss_pred CC--CCCCCCcCHHHHHHHHHHHh-----cCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEEecCChhhh--hh
Q 037625 214 LV--GDSWKSRSVEEKALDIFRSL-----REKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVFTTRFIGVC--GS 282 (467)
Q Consensus 214 ~~--~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iiiTtR~~~~~--~~ 282 (467)
.. ...............+.+.+ .+++.+||+||++. ...+..+...+ .....++.+|+||+..... ..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l-~~~~~~~~~i~~t~~~~~~~~~l 173 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL-EEPPEHVKFLLATTDPQKLPVTI 173 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHH-HSCCTTEEEEEEESCGGGSCHHH
T ss_pred cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHH-hcCCCceEEEEEeCChHhCCHHH
Confidence 00 00000011112222333332 34679999999964 34455554444 2334578888888754321 11
Q ss_pred cCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHHHHh
Q 037625 283 MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIGRAM 343 (467)
Q Consensus 283 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l 343 (467)
......+++++++.++..+++...+.......+ .+....|++.|+|+|..+..+...+
T Consensus 174 ~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 174 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 223457889999999999999988754332222 3567789999999999888766443
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.45 E-value=1.4e-12 Score=116.84 Aligned_cols=184 Identities=11% Similarity=0.078 Sum_probs=115.5
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGL 214 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 214 (467)
..++|++..++.+.+++.....+.+.|+|++|+|||+||+.+++... ....-...+.++.+.......+...+......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKIKEFART 95 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHHHHHHTS
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHHHHHhcc
Confidence 56899999999999999877666699999999999999999998751 11111123334433333333322222111110
Q ss_pred CCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh--hhhhhhccCCCCCCCCCceEEEecCChhhh--hhcCCCcccc
Q 037625 215 VGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER--VDLTKVGVPLSGPKNTTSKVVFTTRFIGVC--GSMEADRKFL 290 (467)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iiiTtR~~~~~--~~~~~~~~~~ 290 (467)
.. ...+++.+||+||++.. .....+...+ .....++.+|+||+..... ........+.
T Consensus 96 ~~-----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l-~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~ 157 (226)
T 2chg_A 96 AP-----------------IGGAPFKIIFLDEADALTADAQAALRRTM-EMYSKSCRFILSCNYVSRIIEPIQSRCAVFR 157 (226)
T ss_dssp CC-----------------STTCSCEEEEEETGGGSCHHHHHHHHHHH-HHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred cC-----------------CCccCceEEEEeChhhcCHHHHHHHHHHH-HhcCCCCeEEEEeCChhhcCHHHHHhCceee
Confidence 00 01256899999999743 3334443333 2234567888888765321 1122234788
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHH
Q 037625 291 VACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIG 340 (467)
Q Consensus 291 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 340 (467)
+.+++.++..+++.+.+.......+ .+....+++.++|+|..+..+.
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 158 FKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999987643221222 3567788899999999655443
No 15
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.29 E-value=2.8e-11 Score=115.12 Aligned_cols=176 Identities=14% Similarity=0.096 Sum_probs=106.8
Q ss_pred CccccchHHHHHHHHHHhc-----CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 037625 135 RTVVGLQSQLEQVWRCLAE-----ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIG 209 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~-----~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 209 (467)
..++|++..++.+..++.. .....+.|+|++|+|||+||+.+++.. ... ..+++.+......++..
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~~---~~~~~~~~~~~~~~l~~--- 82 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GVN---LRVTSGPAIEKPGDLAA--- 82 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TCC---EEEECTTTCCSHHHHHH---
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CCC---EEEEeccccCChHHHHH---
Confidence 5689999999998888752 234678999999999999999999876 222 23443332222222211
Q ss_pred HHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh--hhhhhhccCCC--------CC---------CCCCceE
Q 037625 210 KKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER--VDLTKVGVPLS--------GP---------KNTTSKV 270 (467)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~--------~~---------~~~~s~i 270 (467)
.+... ..++.+|+|||++.. .....+...+. .. ..++..+
T Consensus 83 --------------------~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 83 --------------------ILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp --------------------HHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred --------------------HHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 11110 134678999999652 12221111100 00 0124566
Q ss_pred EEecCChh-hhh-hcC-CCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHHHHh
Q 037625 271 VFTTRFIG-VCG-SME-ADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIGRAM 343 (467)
Q Consensus 271 iiTtR~~~-~~~-~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l 343 (467)
|.||.... +.. ... ....+.+.+++.++..+++.+.+.......+ .+....+++.++|+|..+..+...+
T Consensus 142 i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 142 IGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT---EEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHccCCHHHHHHHHHHH
Confidence 66665432 211 111 2357889999999999999988754432222 3567789999999999887766554
No 16
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.29 E-value=1.8e-11 Score=116.21 Aligned_cols=186 Identities=14% Similarity=0.144 Sum_probs=114.5
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGL 214 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 214 (467)
..++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++... ........++++.+.......+ +.++..+..
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~ 98 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGIDVV-RNQIKHFAQ 98 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHHHH-HTHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChHHH-HHHHHHHHh
Confidence 56899999999999999887666699999999999999999998751 1111112333333332222221 112111110
Q ss_pred CCCCCCCcCHHHHHHHHHHHh-cCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEEecCChhh--hhhcCCCccc
Q 037625 215 VGDSWKSRSVEEKALDIFRSL-REKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVFTTRFIGV--CGSMEADRKF 289 (467)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iiiTtR~~~~--~~~~~~~~~~ 289 (467)
.. ..+ .+++.++|+||++. ....+.+...+ .....++.+|+||+...- .........+
T Consensus 99 ~~----------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~l-e~~~~~~~~il~~~~~~~l~~~l~sr~~~i 161 (323)
T 1sxj_B 99 KK----------------LHLPPGKHKIVILDEADSMTAGAQQALRRTM-ELYSNSTRFAFACNQSNKIIEPLQSQCAIL 161 (323)
T ss_dssp BC----------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHH-HHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred cc----------------ccCCCCCceEEEEECcccCCHHHHHHHHHHH-hccCCCceEEEEeCChhhchhHHHhhceEE
Confidence 00 011 34589999999975 23344443333 223456788887765432 1112334578
Q ss_pred ccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHH-HHHHHHH
Q 037625 290 LVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLA-LITIGRA 342 (467)
Q Consensus 290 ~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pla-i~~~~~~ 342 (467)
++.+++.++..+++...+.......+ .+....|++.|+|.|.. +..+...
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 162 RYSKLSDEDVLKRLLQIIKLEDVKYT---NDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999999987643221222 35677899999999954 4544433
No 17
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.17 E-value=8.5e-11 Score=111.78 Aligned_cols=184 Identities=16% Similarity=0.126 Sum_probs=113.5
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGL 214 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 214 (467)
..++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++... ....-...+.++.+.......+ .
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~-~-------- 94 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGINVI-R-------- 94 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHHHTT-H--------
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCchHHH-H--------
Confidence 56899999999999999887776799999999999999999998751 1110011223332221111100 0
Q ss_pred CCCCCCCcCHHHHHHHHHHH--h-cCCcEEEEeCCCCCh--hhhhhhccCCCCCCCCCceEEEecCChhh-h-hhcCCCc
Q 037625 215 VGDSWKSRSVEEKALDIFRS--L-REKRIVLLLDDIWER--VDLTKVGVPLSGPKNTTSKVVFTTRFIGV-C-GSMEADR 287 (467)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iiiTtR~~~~-~-~~~~~~~ 287 (467)
.....+... + .+++.++|+||++.. .....+...+ .....++++|+||....- . .......
T Consensus 95 -----------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~l-e~~~~~~~~i~~~~~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 95 -----------EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTM-EMFSSNVRFILSCNYSSKIIEPIQSRCA 162 (327)
T ss_dssp -----------HHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHH-HHTTTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred -----------HHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHH-HhcCCCCeEEEEeCCccccCHHHHhhCc
Confidence 011111110 1 256889999999742 3344443333 223456788888875432 1 1111224
Q ss_pred ccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHHHHh
Q 037625 288 KFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIGRAM 343 (467)
Q Consensus 288 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l 343 (467)
.+.+.+++.++..+++...+.......+ .+....|++.++|+|..+..+...+
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 163 IFRFRPLRDEDIAKRLRYIAENEGLELT---EEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCEEC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 7889999999999999987754432222 3567789999999998665544433
No 18
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.10 E-value=1e-09 Score=103.78 Aligned_cols=182 Identities=13% Similarity=0.124 Sum_probs=114.3
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGL 214 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 214 (467)
..++|++..++.+.+++..+..+.+.|+|++|+|||++|+.+++... ........+.++.+......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~------------ 83 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGID------------ 83 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTT------------
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChH------------
Confidence 56899999999999999877666699999999999999999998751 11111122333333221111
Q ss_pred CCCCCCCcCHHHHHHHHHHH--h-cCCcEEEEeCCCCCh--hhhhhhccCCCCCCCCCceEEEecCChh-h-hhhcCCCc
Q 037625 215 VGDSWKSRSVEEKALDIFRS--L-REKRIVLLLDDIWER--VDLTKVGVPLSGPKNTTSKVVFTTRFIG-V-CGSMEADR 287 (467)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iiiTtR~~~-~-~~~~~~~~ 287 (467)
........+... + .+++.++|+|+++.. .....+...+ .....++.+|+||.... + ........
T Consensus 84 --------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~l-e~~~~~~~~i~~~~~~~~l~~~l~sr~~ 154 (319)
T 2chq_A 84 --------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTM-EMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (319)
T ss_dssp --------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGT-SSSSSSEEEEEEESCGGGSCHHHHTTCE
T ss_pred --------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHH-HhcCCCCeEEEEeCChhhcchHHHhhCe
Confidence 011111111111 1 256889999999742 3445555555 33445677887776543 1 11122335
Q ss_pred ccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHHH
Q 037625 288 KFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIGR 341 (467)
Q Consensus 288 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~ 341 (467)
.+.+.+++.++..+++...+.......+ .+....++..++|++..+.....
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 155 VFRFKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTCCCBC---HHHHHHHHHTTTTCHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 7899999999999999988765442222 35667888999999986554433
No 19
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.06 E-value=2.6e-09 Score=103.51 Aligned_cols=194 Identities=15% Similarity=0.153 Sum_probs=111.3
Q ss_pred CccccchHHHHHHHHHHhcCC-CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHh-
Q 037625 135 RTVVGLQSQLEQVWRCLAEES-AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKI- 212 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~-~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l- 212 (467)
..++|++..++.+...+..+. .+.+.|+|++|+||||+|+.+++.. .....+. ............+....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l-~~~~~~~-------~~~~~~~~~~~~~~~~~~ 87 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL-NCETGIT-------ATPCGVCDNCREIEQGRF 87 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH-SCTTCSC-------SSCCSSSHHHHHHHTSCC
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh-CCCCCCC-------CCCCcccHHHHHHhccCC
Confidence 458999999999999998764 3568999999999999999999876 2111110 00000000111111100
Q ss_pred ----cCCCC-CCCCcCHHHHHHHHHHH-hcCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEEecCChh-h-hhh
Q 037625 213 ----GLVGD-SWKSRSVEEKALDIFRS-LREKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVFTTRFIG-V-CGS 282 (467)
Q Consensus 213 ----~~~~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iiiTtR~~~-~-~~~ 282 (467)
..... .............+... ..+++.++|+||++. ....+.+...+ .....++.+|++|.... + ...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~l-e~~~~~~~~Il~~~~~~~l~~~l 166 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL-EEPPEHVKFLLATTDPQKLPVTI 166 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHH-HSCCSSEEEEEEESCGGGSCHHH
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHH-hcCCCceEEEEEeCChHhCcHHH
Confidence 00000 00111222222111110 134678999999964 33444444443 23344667777765433 2 112
Q ss_pred cCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHH
Q 037625 283 MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIG 340 (467)
Q Consensus 283 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 340 (467)
......+++.+++.++..+++.+.+...+...+ .+....|++.++|+|..+..+.
T Consensus 167 ~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~---~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHSSSCHHHHHHHH
T ss_pred HhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHCCCCHHHHHHHH
Confidence 233467889999999999999887643221222 3557789999999999876654
No 20
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.04 E-value=2.7e-09 Score=99.55 Aligned_cols=170 Identities=8% Similarity=0.050 Sum_probs=105.3
Q ss_pred ccccchHHHHHHHHHHh----cCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCC----CCeEEEEEeCCCCCHHHHHHH
Q 037625 136 TVVGLQSQLEQVWRCLA----EESAGIIGLYGMGGVGKTTLLTHINNKFLESPTN----FDCVIWVVVSKDLRLEKIQED 207 (467)
Q Consensus 136 ~~vGr~~~~~~l~~~L~----~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~ 207 (467)
.+.||++++++|...|. .+..+.+.|+|++|+|||++++.+++........ .-..+++++....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 37899999999988876 3567789999999999999999999987321111 114567777777888899999
Q ss_pred HHHHhcCCCCCCCCcCHHHHHHHHHHHh---cCCcEEEEeCCCCChh---hhhhhccCCCCCCCCCceEEEecCChhhh-
Q 037625 208 IGKKIGLVGDSWKSRSVEEKALDIFRSL---REKRIVLLLDDIWERV---DLTKVGVPLSGPKNTTSKVVFTTRFIGVC- 280 (467)
Q Consensus 208 i~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~---~~~~~~~~l~~~~~~~s~iiiTtR~~~~~- 280 (467)
|+.++..... ...........+...+ .+++++++||+++... .+..+.... ........||.++......
T Consensus 101 I~~~L~g~~~--~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~-~~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 101 IWFAISKENL--CGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWI-SSKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp HHHHHSCCC----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHH-HCSSCCEEEEEECCSSCCCH
T ss_pred HHHHhcCCCC--CchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcc-cccCCcEEEEEEecCcccch
Confidence 9999854321 1122233334444443 4568999999997532 222221110 0111223334344332111
Q ss_pred hhc------CC-CcccccCCCCHHHHHHHHHHHhC
Q 037625 281 GSM------EA-DRKFLVACLSEKDAWELFREKVG 308 (467)
Q Consensus 281 ~~~------~~-~~~~~l~~L~~~e~~~lf~~~~~ 308 (467)
..+ .. ...+.+.|++.+|..+++.+++.
T Consensus 178 ~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 178 EQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 000 11 24688999999999999998864
No 21
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.90 E-value=1.2e-07 Score=90.47 Aligned_cols=172 Identities=14% Similarity=0.101 Sum_probs=101.9
Q ss_pred CccccchHHHHHHHHHHhc-----CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 037625 135 RTVVGLQSQLEQVWRCLAE-----ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIG 209 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~-----~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 209 (467)
..++|++..++.+..++.. ...+.+.|+|++|+|||+||+.+++.. ...| +.++.+.......+
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~~----- 97 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SANI---KTTAAPMIEKSGDL----- 97 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCE---EEEEGGGCCSHHHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCe---EEecchhccchhHH-----
Confidence 5689999999999888863 344578999999999999999998876 2222 22332221111111
Q ss_pred HHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh--hhhhhhccCCC-----------------CCCCCCceE
Q 037625 210 KKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER--VDLTKVGVPLS-----------------GPKNTTSKV 270 (467)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~-----------------~~~~~~s~i 270 (467)
...+ .. ..+..+|+||+++.. .....+...+. ....++..+
T Consensus 98 ------------------~~~~-~~-~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 98 ------------------AAIL-TN-LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp ------------------HHHH-HT-CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred ------------------HHHH-Hh-ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 1111 11 235678899998742 11111111100 001123566
Q ss_pred EEecCChhh-h-hhc-CCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHH
Q 037625 271 VFTTRFIGV-C-GSM-EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIG 340 (467)
Q Consensus 271 iiTtR~~~~-~-~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 340 (467)
|.+|..... . ... .....+.+.+++.++...++.+.+.......+ .+....|++.+.|+|-.+..+.
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCE---EKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEEC---HHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHCcCHHHHHHHH
Confidence 666654322 1 111 22367899999999999999887654331112 3567788888999996555443
No 22
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.89 E-value=1.1e-08 Score=98.35 Aligned_cols=193 Identities=13% Similarity=0.148 Sum_probs=110.5
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCC-CCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLES-PTNFDCVIWVVVSKDLRLEKIQEDIGKKIG 213 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 213 (467)
..++|++..++.+..++..+..+.+.|+|++|+||||+|+.+++..... ...+ ....++.+.......+. .......
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~ 114 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGISIVR-EKVKNFA 114 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHHHHT-THHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchHHHH-HHHHHHh
Confidence 5689999999999999987755569999999999999999998875100 0111 23333333332333222 2111111
Q ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh--hhhhhhccCCCCCCCCCceEEEecCChh-hh-hhcCCCccc
Q 037625 214 LVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER--VDLTKVGVPLSGPKNTTSKVVFTTRFIG-VC-GSMEADRKF 289 (467)
Q Consensus 214 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iiiTtR~~~-~~-~~~~~~~~~ 289 (467)
..... ..... .....-.+++-+|++|+++.. .....+...+ .......++|++|.... +. ........+
T Consensus 115 ~~~~~-~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~l-e~~~~~~~~il~~~~~~~l~~~l~sR~~~i 187 (353)
T 1sxj_D 115 RLTVS-KPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTM-ETYSGVTRFCLICNYVTRIIDPLASQCSKF 187 (353)
T ss_dssp HSCCC-CCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHH-HHTTTTEEEEEEESCGGGSCHHHHHHSEEE
T ss_pred hhccc-ccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHH-HhcCCCceEEEEeCchhhCcchhhccCceE
Confidence 00000 00000 000111235679999998642 2233333332 12234566777665432 21 111122478
Q ss_pred ccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHH
Q 037625 290 LVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITI 339 (467)
Q Consensus 290 ~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 339 (467)
.+.+++.++....+...+.......+ .+....|++.++|.|..+..+
T Consensus 188 ~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 188 RFKALDASNAIDRLRFISEQENVKCD---DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHTSSCHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 89999999999999987754432222 356789999999999865443
No 23
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.89 E-value=2.3e-09 Score=96.93 Aligned_cols=173 Identities=8% Similarity=0.079 Sum_probs=101.3
Q ss_pred Cccccc---hHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 037625 135 RTVVGL---QSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKK 211 (467)
Q Consensus 135 ~~~vGr---~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 211 (467)
+.|+|. +..++.+..+...+..+.+.|+|++|+||||||+.+++... .....+.|++.+..... +..
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~---~~~~~~~~~~~~~~~~~------~~~- 97 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN---ELERRSFYIPLGIHASI------STA- 97 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEGGGGGGS------CGG-
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEHHHHHHH------HHH-
Confidence 456763 35566666666655677899999999999999999998872 22334566655432100 000
Q ss_pred hcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCChh--h--hhhhccCCCCCCCCC-ceEEEecCChhh-------
Q 037625 212 IGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWERV--D--LTKVGVPLSGPKNTT-SKVVFTTRFIGV------- 279 (467)
Q Consensus 212 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~--~~~~~~~l~~~~~~~-s~iiiTtR~~~~------- 279 (467)
..+.+ .++.+|||||++... . ...+...+......+ .++|+||+...-
T Consensus 98 -------------------~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~ 157 (242)
T 3bos_A 98 -------------------LLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLP 157 (242)
T ss_dssp -------------------GGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCH
T ss_pred -------------------HHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhh
Confidence 00011 346799999996421 1 222222210011122 247777763321
Q ss_pred --hhhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHH
Q 037625 280 --CGSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIG 340 (467)
Q Consensus 280 --~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 340 (467)
...+.....+.+.+++.++..+++...+.......+ .+....+++.++|++-.+..+.
T Consensus 158 ~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 158 DLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLP---EDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCC---HHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHccCCHHHHHHHH
Confidence 111112257889999999999999987753332222 3566788899999887665543
No 24
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.86 E-value=3.4e-08 Score=97.36 Aligned_cols=175 Identities=17% Similarity=0.155 Sum_probs=104.8
Q ss_pred CccccchHHH---HHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCC-CCHHHHHHHHHH
Q 037625 135 RTVVGLQSQL---EQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-LRLEKIQEDIGK 210 (467)
Q Consensus 135 ~~~vGr~~~~---~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~ 210 (467)
..++|.+..+ ..|...+..+..+.+.|+|++|+||||||+.+++.. ...| +.++.. ....++ +.+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~---~~~f-----~~l~a~~~~~~~i-r~~-- 94 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA---NADV-----ERISAVTSGVKEI-REA-- 94 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT---TCEE-----EEEETTTCCHHHH-HHH--
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh---CCCe-----EEEEeccCCHHHH-HHH--
Confidence 5689999888 788888888877889999999999999999999986 2222 222211 122221 111
Q ss_pred HhcCCCCCCCCcCHHHHHHHHHH-HhcCCcEEEEeCCCCCh--hhhhhhccCCCCCCCCCceEEE-ecCChhh---hhhc
Q 037625 211 KIGLVGDSWKSRSVEEKALDIFR-SLREKRIVLLLDDIWER--VDLTKVGVPLSGPKNTTSKVVF-TTRFIGV---CGSM 283 (467)
Q Consensus 211 ~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iii-TtR~~~~---~~~~ 283 (467)
...... ...+++.+|+||+++.. ...+.+...+ .. ....+|. ||.+... ....
T Consensus 95 -----------------~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~l--e~-~~v~lI~att~n~~~~l~~aL~ 154 (447)
T 3pvs_A 95 -----------------IERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHI--ED-GTITFIGATTENPSFELNSALL 154 (447)
T ss_dssp -----------------HHHHHHHHHTTCCEEEEEETTTCC------CCHHHH--HT-TSCEEEEEESSCGGGSSCHHHH
T ss_pred -----------------HHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHH--hc-CceEEEecCCCCcccccCHHHh
Confidence 111111 12457889999999743 2333333332 11 2233443 5555432 1222
Q ss_pred CCCcccccCCCCHHHHHHHHHHHhCCCCC----CCChhHHHHHHHHHHHhCCCcHHHHHHH
Q 037625 284 EADRKFLVACLSEKDAWELFREKVGEETL----KSDHDIAELAQIVANECGGLPLALITIG 340 (467)
Q Consensus 284 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~----~~~~~~~~~~~~I~~~~~G~Plai~~~~ 340 (467)
.....+.+.+++.++...++.+.+..... ....--.+....|++.++|.+-.+..+.
T Consensus 155 sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 155 SRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred CceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 33457889999999999999988754110 0001124567788888999887555443
No 25
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.86 E-value=1.9e-09 Score=93.72 Aligned_cols=46 Identities=22% Similarity=0.396 Sum_probs=41.8
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++||+++++.+.+.+.....+.+.|+|++|+|||+||+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999987767789999999999999999998876
No 26
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.85 E-value=2e-08 Score=93.36 Aligned_cols=177 Identities=21% Similarity=0.238 Sum_probs=103.5
Q ss_pred CccccchHHHHHHHHHHhc-------------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCH
Q 037625 135 RTVVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 201 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~-------------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 201 (467)
..++|.+..++.|.+.+.. ...+.+.|+|++|+|||+||+.+++.. ... .+.+..+....
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~---~~~v~~~~~~~- 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NAT---FIRVVGSELVK- 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCE---EEEEEGGGGCC-
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehHHHHH-
Confidence 5689999999999887742 345679999999999999999999886 222 22232211100
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH-HhcCCcEEEEeCCCCCh----------------hhhhhhccCCC-CC
Q 037625 202 EKIQEDIGKKIGLVGDSWKSRSVEEKALDIFR-SLREKRIVLLLDDIWER----------------VDLTKVGVPLS-GP 263 (467)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~----------------~~~~~~~~~l~-~~ 263 (467)
. ...........+.. ....++.+|+|||++.. ..+..+...+. ..
T Consensus 90 ----------------~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 152 (285)
T 3h4m_A 90 ----------------K-FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD 152 (285)
T ss_dssp ----------------C-STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC
T ss_pred ----------------h-ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC
Confidence 0 00111122222222 23456789999999532 11111111110 02
Q ss_pred CCCCceEEEecCChhhhh--hc---CCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCC-CcHHHH
Q 037625 264 KNTTSKVVFTTRFIGVCG--SM---EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGG-LPLALI 337 (467)
Q Consensus 264 ~~~~s~iiiTtR~~~~~~--~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G-~Plai~ 337 (467)
...+..||.||....... .. .....+.+.+++.++..+++...+.......... ...++..+.| .|-.|.
T Consensus 153 ~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 153 ARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELK 228 (285)
T ss_dssp SSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHH
T ss_pred CCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHH
Confidence 234667788887543311 11 2234688999999999999999876544333222 3467777777 454554
Q ss_pred HH
Q 037625 338 TI 339 (467)
Q Consensus 338 ~~ 339 (467)
.+
T Consensus 229 ~l 230 (285)
T 3h4m_A 229 AI 230 (285)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 27
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.84 E-value=2.3e-08 Score=98.68 Aligned_cols=184 Identities=17% Similarity=0.129 Sum_probs=106.5
Q ss_pred Cccc-cchHH--HHHHHHHHhcCC-CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 037625 135 RTVV-GLQSQ--LEQVWRCLAEES-AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGK 210 (467)
Q Consensus 135 ~~~v-Gr~~~--~~~l~~~L~~~~-~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 210 (467)
+.|+ |.... ...+........ ...+.|+|++|+||||||+.+++.... ...-..+++++. ..+...+..
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~-~~~~~~v~~v~~------~~~~~~~~~ 177 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITS------EKFLNDLVD 177 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHH-HCCSSCEEEEEH------HHHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeH------HHHHHHHHH
Confidence 4455 64433 334444444433 568999999999999999999987621 111223455543 233444444
Q ss_pred HhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh----hhhhhhccCCCCCCCCCceEEEecCChh--------
Q 037625 211 KIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER----VDLTKVGVPLSGPKNTTSKVVFTTRFIG-------- 278 (467)
Q Consensus 211 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----~~~~~~~~~l~~~~~~~s~iiiTtR~~~-------- 278 (467)
.+... . ...+...+..++.+|+|||++.. ...+.+...+......|..||+||.+..
T Consensus 178 ~~~~~-------~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~ 246 (440)
T 2z4s_A 178 SMKEG-------K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQD 246 (440)
T ss_dssp HHHTT-------C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCH
T ss_pred HHHcc-------c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHH
Confidence 44211 1 12233444446789999999632 2223332222111245678888887532
Q ss_pred -hhhhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHH
Q 037625 279 -VCGSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITI 339 (467)
Q Consensus 279 -~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 339 (467)
+...+.....+.+.+++.++..+++.+.+.......++ +....|+..++|++--+.-+
T Consensus 247 ~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 247 RLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp HHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHHH
T ss_pred HHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHHH
Confidence 12222334578899999999999999877532222222 44668889999998755443
No 28
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.84 E-value=3e-08 Score=100.10 Aligned_cols=189 Identities=12% Similarity=0.051 Sum_probs=106.8
Q ss_pred CccccchHHHHHHHHHHhc-----------------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCC
Q 037625 135 RTVVGLQSQLEQVWRCLAE-----------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK 197 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~-----------------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 197 (467)
..++|++..++.|.+++.. +..+.+.|+|++|+||||+|+.+++.. . + .++.++.+.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l---~--~-~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---G--Y-DILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---T--C-EEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---C--C-CEEEEeCCC
Confidence 5689999999999999874 134689999999999999999999986 1 1 234444444
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh-----hhhhhhccCCCCCCCCCceEEE
Q 037625 198 DLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER-----VDLTKVGVPLSGPKNTTSKVVF 272 (467)
Q Consensus 198 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----~~~~~~~~~l~~~~~~~s~iii 272 (467)
..... +....+........ ... -...... .....+++.+|+||+++.. ..+..+...+ ...+..||+
T Consensus 113 ~~~~~-~~~~~i~~~~~~~~-~~~-~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l---~~~~~~iIl 184 (516)
T 1sxj_A 113 VRSKT-LLNAGVKNALDNMS-VVG-YFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFC---RKTSTPLIL 184 (516)
T ss_dssp CCCHH-HHHHTGGGGTTBCC-STT-TTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHH---HHCSSCEEE
T ss_pred cchHH-HHHHHHHHHhcccc-HHH-HHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHH---HhcCCCEEE
Confidence 43332 22222222111000 000 0000000 0012357889999999642 1122332222 112334555
Q ss_pred ecCChh---hhhhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCc-HHHHHHH
Q 037625 273 TTRFIG---VCGSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLP-LALITIG 340 (467)
Q Consensus 273 TtR~~~---~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P-lai~~~~ 340 (467)
++.... +.........+.+.+++.++..+++...+.......++ +....|++.++|.+ .++..+.
T Consensus 185 i~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 185 ICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp EESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHHT
T ss_pred EEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHHH
Confidence 544322 22222334578899999999999998876533322222 34668889999955 4455443
No 29
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.78 E-value=3.8e-08 Score=94.49 Aligned_cols=195 Identities=9% Similarity=0.078 Sum_probs=105.0
Q ss_pred CccccchHHHHHHHHHH-hcCCCcEEEEEccCCCcHHHHHHHHHhcccC-CCCC--CCe--------------------E
Q 037625 135 RTVVGLQSQLEQVWRCL-AEESAGIIGLYGMGGVGKTTLLTHINNKFLE-SPTN--FDC--------------------V 190 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L-~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~-~~~~--f~~--------------------~ 190 (467)
..++|.+..++.+.+++ ..+..+.+.|+|++|+||||+++.++..... ..+. ++. .
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce
Confidence 56899999999999988 6655555999999999999999999885411 1110 000 1
Q ss_pred EEEEeCCCC-CHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh--hhhhhhccCCCCCCCCC
Q 037625 191 IWVVVSKDL-RLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER--VDLTKVGVPLSGPKNTT 267 (467)
Q Consensus 191 ~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~ 267 (467)
+.+..+... ......++++..+..... ..... .+ ..+.+++-++|||++... ...+.+...+ .....+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~l-e~~~~~ 164 (354)
T 1sxj_E 94 LEITPSDMGNNDRIVIQELLKEVAQMEQ------VDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTM-EKYSKN 164 (354)
T ss_dssp EEECCC----CCHHHHHHHHHHHTTTTC--------------------CCEEEEEECTTSSCHHHHHHHHHHH-HHSTTT
T ss_pred EEecHhhcCCcchHHHHHHHHHHHHhcc------ccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHH-HhhcCC
Confidence 111111000 000011222222110000 00000 00 002346779999999752 2233333332 112345
Q ss_pred ceEEEecCChh-hh-hhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHH
Q 037625 268 SKVVFTTRFIG-VC-GSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIG 340 (467)
Q Consensus 268 s~iiiTtR~~~-~~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 340 (467)
+.+|++|.+.. +. ........+++.+++.++..+++...+...+...+. .+....|++.++|.+-.+..+.
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET--KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC--SHHHHHHHHHHTTCHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHcCCCHHHHHHHH
Confidence 77777776532 21 122333678899999999999999876433211110 1456788999999987655544
No 30
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.73 E-value=3.8e-07 Score=84.01 Aligned_cols=167 Identities=15% Similarity=0.118 Sum_probs=90.9
Q ss_pred CccccchHHHHHHHH-------HHh---cCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHH
Q 037625 135 RTVVGLQSQLEQVWR-------CLA---EESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKI 204 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~-------~L~---~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 204 (467)
..++|....++++.. .+. ....+.+.|+|++|+|||+||+.+++.. ...| +.++.+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~---~~i~~~~~------ 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPF---IKICSPDK------ 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSE---EEEECGGG------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEeCHHH------
Confidence 357788777666665 332 2345679999999999999999999875 2221 22222210
Q ss_pred HHHHHHHhcCCCCCCCCcCH-HHHHHHHHHHhcCCcEEEEeCCCCCh------------hhhhhhccCCCC--CCCCCce
Q 037625 205 QEDIGKKIGLVGDSWKSRSV-EEKALDIFRSLREKRIVLLLDDIWER------------VDLTKVGVPLSG--PKNTTSK 269 (467)
Q Consensus 205 ~~~i~~~l~~~~~~~~~~~~-~~~~~~l~~~l~~k~~LlVlDdv~~~------------~~~~~~~~~l~~--~~~~~s~ 269 (467)
+ .+. ..... ......+......++.+|+|||++.. ..++.+...+.. ..+....
T Consensus 101 -------~--~g~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ 169 (272)
T 1d2n_A 101 -------M--IGF--SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLL 169 (272)
T ss_dssp -------C--TTC--CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEE
T ss_pred -------h--cCC--chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEE
Confidence 0 000 00000 11112222233467899999998532 112222222211 1233445
Q ss_pred EEEecCChhhhhh---cC-CCcccccCCCCH-HHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCC
Q 037625 270 VVFTTRFIGVCGS---ME-ADRKFLVACLSE-KDAWELFREKVGEETLKSDHDIAELAQIVANECGGL 332 (467)
Q Consensus 270 iiiTtR~~~~~~~---~~-~~~~~~l~~L~~-~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 332 (467)
||.||........ .. ....+.+++++. ++...++.+... .+ .+....|++.+.|.
T Consensus 170 ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~-----~~---~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 170 IIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN-----FK---DKERTTIAQQVKGK 229 (272)
T ss_dssp EEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC-----SC---HHHHHHHHHHHTTS
T ss_pred EEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC-----CC---HHHHHHHHHHhcCC
Confidence 6667776644222 11 245678888988 677777665321 11 34567888888883
No 31
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.71 E-value=7.3e-08 Score=93.05 Aligned_cols=198 Identities=15% Similarity=0.115 Sum_probs=103.0
Q ss_pred CCccccchHHHHH---HHHHHhcCCC--cEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEe----CCCCCHHHH
Q 037625 134 ERTVVGLQSQLEQ---VWRCLAEESA--GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVV----SKDLRLEKI 204 (467)
Q Consensus 134 ~~~~vGr~~~~~~---l~~~L~~~~~--~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~----~~~~~~~~~ 204 (467)
.+.++|++..++. +.+.+..+.. +.+.|+|++|+|||+||+.+++.. ..... .+.+.. +......+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-~~~~~---~~~~~~~~~~~~~~~~~~~ 118 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL-GPDTP---FTAIAGSEIFSLEMSKTEA 118 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH-CSSCC---EEEEEGGGGSCSSSCHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh-cccCC---cccccchhhhhcccchhHH
Confidence 3568999988776 4455555433 589999999999999999999987 21111 122221 122233333
Q ss_pred HHHHHHHhc-C--------------------CCC-------CCCCcCHHHHHHHH---HHHh--cCC----cEEEEeCCC
Q 037625 205 QEDIGKKIG-L--------------------VGD-------SWKSRSVEEKALDI---FRSL--REK----RIVLLLDDI 247 (467)
Q Consensus 205 ~~~i~~~l~-~--------------------~~~-------~~~~~~~~~~~~~l---~~~l--~~k----~~LlVlDdv 247 (467)
+........ . ... .............+ .... .++ +.+|+||++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi 198 (368)
T 3uk6_A 119 LTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEV 198 (368)
T ss_dssp HHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESG
T ss_pred HHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhc
Confidence 333332210 0 000 00000011122222 1111 133 459999999
Q ss_pred CCh--hhhhhhccCCCCCCCCCceEEEecC-Ch------------hh-hhhcCCCcccccCCCCHHHHHHHHHHHhCCCC
Q 037625 248 WER--VDLTKVGVPLSGPKNTTSKVVFTTR-FI------------GV-CGSMEADRKFLVACLSEKDAWELFREKVGEET 311 (467)
Q Consensus 248 ~~~--~~~~~~~~~l~~~~~~~s~iiiTtR-~~------------~~-~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~ 311 (467)
+.. .....+...+ ...... .++++|. .. .+ .........+.+.+++.++..+++...+....
T Consensus 199 ~~l~~~~~~~L~~~l-e~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~ 276 (368)
T 3uk6_A 199 HMLDIESFSFLNRAL-ESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEED 276 (368)
T ss_dssp GGSBHHHHHHHHHHT-TCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTT
T ss_pred cccChHHHHHHHHHh-hCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcC
Confidence 742 3333333333 122222 3333332 10 01 11112224578999999999999998775433
Q ss_pred CCCChhHHHHHHHHHHHhC-CCcHHHHHHH
Q 037625 312 LKSDHDIAELAQIVANECG-GLPLALITIG 340 (467)
Q Consensus 312 ~~~~~~~~~~~~~I~~~~~-G~Plai~~~~ 340 (467)
...+ .+....|++.+. |.|-.+..+.
T Consensus 277 ~~~~---~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 277 VEMS---EDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp CCBC---HHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCCC---HHHHHHHHHHhcCCCHHHHHHHH
Confidence 2222 356778888887 8876555443
No 32
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.68 E-value=2.5e-07 Score=84.65 Aligned_cols=181 Identities=15% Similarity=0.148 Sum_probs=100.0
Q ss_pred CccccchHHHHHHHHHHh---c---------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHH
Q 037625 135 RTVVGLQSQLEQVWRCLA---E---------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 202 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~---~---------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 202 (467)
..++|.+..++.|.+++. . ...+.+.|+|++|+|||++|+.+++.. ... .+.++.+...+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~~~~~~~~~-- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVP---FLAMAGAEFVE-- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCC---EEEEETTTTSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEechHHHHh--
Confidence 468999988877766543 1 234568899999999999999999976 222 23333332110
Q ss_pred HHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh-----------------hhhhhhccCCCC-CC
Q 037625 203 KIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER-----------------VDLTKVGVPLSG-PK 264 (467)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------------~~~~~~~~~l~~-~~ 264 (467)
.............+.......+.+|+|||++.. ..+..+...+.. ..
T Consensus 78 ---------------~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 78 ---------------VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp ---------------SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred ---------------hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 001111111222222233456799999999742 011122111101 12
Q ss_pred CCCceEEEecCChhhh--hhc---CCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcH-HHHH
Q 037625 265 NTTSKVVFTTRFIGVC--GSM---EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPL-ALIT 338 (467)
Q Consensus 265 ~~~s~iiiTtR~~~~~--~~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~ 338 (467)
..+..+|.||...... ... .....+.+.+.+.++-.+++...+......... ......+++.+.|.+- .|..
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSS--TFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTH--HHHHHHHHHTCTTCCHHHHHH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcch--hhHHHHHHHHCCCCCHHHHHH
Confidence 3456677777654321 111 233567788999999999998876543322221 2234678888888754 4444
Q ss_pred HH
Q 037625 339 IG 340 (467)
Q Consensus 339 ~~ 340 (467)
+.
T Consensus 221 l~ 222 (262)
T 2qz4_A 221 IC 222 (262)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 33
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.68 E-value=2.2e-06 Score=80.89 Aligned_cols=182 Identities=17% Similarity=0.189 Sum_probs=104.9
Q ss_pred CccccchHHHHHHHHHHhc------------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHH
Q 037625 135 RTVVGLQSQLEQVWRCLAE------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 202 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~------------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 202 (467)
.+++|.+..++.|.+.+.. ...+.+.|+|++|+|||+||+.+++.. .. ...+.++.+.-..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~--~~~~~i~~~~l~~-- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---NN--STFFSISSSDLVS-- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT---TS--CEEEEEECCSSCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc---CC--CcEEEEEhHHHHh--
Confidence 5689999988888877631 123679999999999999999999875 11 1223333332110
Q ss_pred HHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh-cCCcEEEEeCCCCChh-------------hhhhhccCCC--CCCCC
Q 037625 203 KIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL-REKRIVLLLDDIWERV-------------DLTKVGVPLS--GPKNT 266 (467)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~-------------~~~~~~~~l~--~~~~~ 266 (467)
...... +.....+.... ..++.+|+||+++... ....+...+. .....
T Consensus 85 ---------------~~~g~~-~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 85 ---------------KWLGES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp ---------------SSCCSC-HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred ---------------hhhhHH-HHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence 001112 22333333332 4578999999996420 0111111110 11234
Q ss_pred CceEEEecCChhhh-h--hcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCC-cHHHHHHHHH
Q 037625 267 TSKVVFTTRFIGVC-G--SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGL-PLALITIGRA 342 (467)
Q Consensus 267 ~s~iiiTtR~~~~~-~--~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~-Plai~~~~~~ 342 (467)
+..||.||...... . .......+.+...+.++-.+++...+.......+ ......|++.+.|. +-.|..+...
T Consensus 149 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~sgadl~~l~~~ 225 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT---EADFRELGRKTDGYSGADISIIVRD 225 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC---HHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 55666666543221 1 1133456788889999999999988765432222 24567888899887 4446655533
No 34
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.68 E-value=2.4e-07 Score=88.37 Aligned_cols=177 Identities=14% Similarity=0.187 Sum_probs=104.4
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCC-eEEEEEeCCCCCHHHHHHHHHHHhc
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFD-CVIWVVVSKDLRLEKIQEDIGKKIG 213 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~ 213 (467)
..++|.+..++.|...+..++.+.+.++|++|+||||+|+.+++... ...+. .+..++.+.......+.. ...
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~~~~~~~~~~~~~ir~-~i~--- 98 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY--GKNYSNMVLELNASDDRGIDVVRN-QIK--- 98 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH--TTSHHHHEEEECTTSCCSHHHHHT-HHH---
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc--CCCccceEEEEcCcccccHHHHHH-HHH---
Confidence 45789999999999999887666699999999999999999998861 11111 122222222222221111 111
Q ss_pred CCCCCCCCcCHHHHHHHHHHH---hcCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEEecCChh-hh-hhcCCC
Q 037625 214 LVGDSWKSRSVEEKALDIFRS---LREKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVFTTRFIG-VC-GSMEAD 286 (467)
Q Consensus 214 ~~~~~~~~~~~~~~~~~l~~~---l~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iiiTtR~~~-~~-~~~~~~ 286 (467)
.+.+. +.+.+-++|+|+++. ....+.+...+ ......+.+|++|.... +. ...+..
T Consensus 99 ----------------~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~l-e~~~~~~~~il~~n~~~~i~~~i~sR~ 161 (340)
T 1sxj_C 99 ----------------DFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVI-ERYTKNTRFCVLANYAHKLTPALLSQC 161 (340)
T ss_dssp ----------------HHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHH-HHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred ----------------HHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHH-hcCCCCeEEEEEecCccccchhHHhhc
Confidence 11110 123467899999863 22333333222 12234566776665432 11 111223
Q ss_pred cccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHH
Q 037625 287 RKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALI 337 (467)
Q Consensus 287 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~ 337 (467)
..+.+.+++.++..+.+.+.+.......+ .+....|++.++|.+--+.
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~i~---~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 162 TRFRFQPLPQEAIERRIANVLVHEKLKLS---PNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCBC---HHHHHHHHHHHTTCHHHHH
T ss_pred eeEeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 46789999999999999887743332222 3567789999999887543
No 35
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.66 E-value=9.1e-08 Score=90.00 Aligned_cols=155 Identities=12% Similarity=0.167 Sum_probs=87.1
Q ss_pred ccccchHHHHHHHHHHh---------------cCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCC
Q 037625 136 TVVGLQSQLEQVWRCLA---------------EESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLR 200 (467)
Q Consensus 136 ~~vGr~~~~~~l~~~L~---------------~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 200 (467)
.++|.+..++.|.+.+. ......+.|+|++|+|||++|+.+++.... .......-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~-~~~~~~~~~~~~~~~-- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR-LGYVRKGHLVSVTRD-- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHH-TTSSSSCCEEEECGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHh-cCCcCCCcEEEEcHH--
Confidence 47999998888877654 223457999999999999999988877621 111111112222211
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCC-----------ChhhhhhhccCCCCCCCCCce
Q 037625 201 LEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIW-----------ERVDLTKVGVPLSGPKNTTSK 269 (467)
Q Consensus 201 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~-----------~~~~~~~~~~~l~~~~~~~s~ 269 (467)
.+. ........... ..+.... +..+|+||+++ .......+...+ .....+..
T Consensus 109 ----------~l~---~~~~g~~~~~~-~~~~~~~--~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l-~~~~~~~~ 171 (309)
T 3syl_A 109 ----------DLV---GQYIGHTAPKT-KEVLKRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVM-ENNRDDLV 171 (309)
T ss_dssp ----------GTC---CSSTTCHHHHH-HHHHHHH--TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHH-HHCTTTCE
T ss_pred ----------Hhh---hhcccccHHHH-HHHHHhc--CCCEEEEEChhhhccCCCcccccHHHHHHHHHHH-hcCCCCEE
Confidence 010 00011111111 2222222 34699999997 223333443333 23345667
Q ss_pred EEEecCChhhhh-------hc-CCCcccccCCCCHHHHHHHHHHHhCCC
Q 037625 270 VVFTTRFIGVCG-------SM-EADRKFLVACLSEKDAWELFREKVGEE 310 (467)
Q Consensus 270 iiiTtR~~~~~~-------~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~ 310 (467)
+|+||....... .. .....+.+++++.++..+++...+...
T Consensus 172 ~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~ 220 (309)
T 3syl_A 172 VILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQ 220 (309)
T ss_dssp EEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred EEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHc
Confidence 777776432210 00 123678899999999999998877543
No 36
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.66 E-value=7.1e-07 Score=84.80 Aligned_cols=168 Identities=13% Similarity=0.095 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHhcCCC-cEEEEEccCCCcHHHHHHHHHhcccCCCC-------------------CCCeEEEEEeCCCCC
Q 037625 141 QSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPT-------------------NFDCVIWVVVSKDLR 200 (467)
Q Consensus 141 ~~~~~~l~~~L~~~~~-~~i~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------~f~~~~wv~~~~~~~ 200 (467)
+...+.+.+.+..++. +.+.++|++|+|||++|+.+++....... +++ ..++....
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~--- 83 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEK--- 83 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCT---
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccc---
Confidence 4556777777776654 46999999999999999999987621110 122 11221110
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh-----cCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEEe
Q 037625 201 LEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL-----REKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVFT 273 (467)
Q Consensus 201 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iiiT 273 (467)
.......++ +..+.+.+ .+++-++|+|+++. ....+.+...+ .....++.+|++
T Consensus 84 -----------------~~~~~~i~~-ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~l-Eep~~~~~~Il~ 144 (334)
T 1a5t_A 84 -----------------GKNTLGVDA-VREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTL-EEPPAETWFFLA 144 (334)
T ss_dssp -----------------TCSSBCHHH-HHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHH-TSCCTTEEEEEE
T ss_pred -----------------cCCCCCHHH-HHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHh-cCCCCCeEEEEE
Confidence 001111222 22233332 24678999999974 23344444444 233446677766
Q ss_pred cCChh-h-hhhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHH
Q 037625 274 TRFIG-V-CGSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITI 339 (467)
Q Consensus 274 tR~~~-~-~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 339 (467)
|.+.. + ....+....+++.+++.++..+++.+... .+ .+.+..+++.++|.|..+..+
T Consensus 145 t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~-----~~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 145 TREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT-----MS---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp ESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC-----CC---HHHHHHHHHHTTTCHHHHHHT
T ss_pred eCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC-----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 66543 2 22223445789999999999999988751 11 245678999999999866543
No 37
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.64 E-value=1.7e-07 Score=88.75 Aligned_cols=177 Identities=16% Similarity=0.134 Sum_probs=98.6
Q ss_pred Cccc-cch--HHHHHHHHHHhcC--CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 037625 135 RTVV-GLQ--SQLEQVWRCLAEE--SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIG 209 (467)
Q Consensus 135 ~~~v-Gr~--~~~~~l~~~L~~~--~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 209 (467)
+.|+ |.. .....+...+..+ ....+.|+|++|+||||||+.+++..... -..+++++. .++...+.
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~------~~~~~~~~ 81 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSA------DDFAQAMV 81 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEH------HHHHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEH------HHHHHHHH
Confidence 4455 533 2334455555443 34679999999999999999999876211 223455543 33333443
Q ss_pred HHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCChh----hhhhhccCCCCCCCCCceEEEecCChhh------
Q 037625 210 KKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWERV----DLTKVGVPLSGPKNTTSKVVFTTRFIGV------ 279 (467)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----~~~~~~~~l~~~~~~~s~iiiTtR~~~~------ 279 (467)
..+.. ... ..+...+. ++.+|+|||++... ..+.+...+......+..+|+||.+...
T Consensus 82 ~~~~~-------~~~----~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~ 149 (324)
T 1l8q_A 82 EHLKK-------GTI----NEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVS 149 (324)
T ss_dssp HHHHH-------TCH----HHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSC
T ss_pred HHHHc-------CcH----HHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhh
Confidence 33321 011 11222222 36799999996422 2222322221112345677777754321
Q ss_pred ---hhhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHH
Q 037625 280 ---CGSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALI 337 (467)
Q Consensus 280 ---~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~ 337 (467)
...+.....+.+++ +.++..+++...+.......+ .+....|++.+ |++-.+.
T Consensus 150 ~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~---~~~l~~l~~~~-g~~r~l~ 205 (324)
T 1l8q_A 150 DRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELR---KEVIDYLLENT-KNVREIE 205 (324)
T ss_dssp HHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHC-SSHHHHH
T ss_pred hHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHhC-CCHHHHH
Confidence 11222235688999 999999999988753332222 35567888888 8765443
No 38
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.62 E-value=5.4e-07 Score=86.46 Aligned_cols=181 Identities=13% Similarity=0.064 Sum_probs=104.5
Q ss_pred CccccchHHHHHHHHHHhc------------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHH
Q 037625 135 RTVVGLQSQLEQVWRCLAE------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 202 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~------------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 202 (467)
..++|.+..++.|.+.+.. ...+.+.|+|++|+|||+||+.+++.. .. ..+.++.+.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~---~~~~i~~~~l~~-- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GA---TFFSISASSLTS-- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TC---EEEEEEGGGGCC--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CC---eEEEEehHHhhc--
Confidence 4689999999999887742 245679999999999999999999876 22 233444332110
Q ss_pred HHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh-cCCcEEEEeCCCCCh-------------hhhhhhccCCC---CCCC
Q 037625 203 KIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL-REKRIVLLLDDIWER-------------VDLTKVGVPLS---GPKN 265 (467)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-------------~~~~~~~~~l~---~~~~ 265 (467)
. ...........+.... ..++.+|+||+++.. .....+...+. ....
T Consensus 156 ---------------~-~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 156 ---------------K-WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp ---------------S-STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC
T ss_pred ---------------c-ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 0011122222222222 356789999999421 11112211110 1123
Q ss_pred CCceEEEecCChhh-hh--hcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCC-CcHHHHHHHH
Q 037625 266 TTSKVVFTTRFIGV-CG--SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGG-LPLALITIGR 341 (467)
Q Consensus 266 ~~s~iiiTtR~~~~-~~--~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G-~Plai~~~~~ 341 (467)
.+..||.||..... .. .......+.+...+.++..+++...+........ .+....|++.+.| .+-.|..++.
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~---~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS---EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45566666654322 11 1123346778889999999999887754332222 3567788899988 4556665544
Q ss_pred H
Q 037625 342 A 342 (467)
Q Consensus 342 ~ 342 (467)
.
T Consensus 297 ~ 297 (357)
T 3d8b_A 297 E 297 (357)
T ss_dssp H
T ss_pred H
Confidence 3
No 39
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.62 E-value=3.8e-07 Score=86.37 Aligned_cols=177 Identities=12% Similarity=0.056 Sum_probs=101.4
Q ss_pred CccccchHHHHHHHHHHhcCCC-cEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 037625 135 RTVVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIG 213 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~-~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 213 (467)
..++|.+..++.+.+++..+.. .++.++|++|+|||++|+.+++.. . ...+.++.+.. ....+ ...+....
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~---~~~~~i~~~~~-~~~~i-~~~~~~~~ 97 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---N---ADMMFVNGSDC-KIDFV-RGPLTNFA 97 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---T---EEEEEEETTTC-CHHHH-HTHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---C---CCEEEEccccc-CHHHH-HHHHHHHH
Confidence 5689999999999999987654 567888889999999999999876 1 22344443332 22222 21111110
Q ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCChh---hhhhhccCCCCCCCCCceEEEecCChhh-h-hhcCCCcc
Q 037625 214 LVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWERV---DLTKVGVPLSGPKNTTSKVVFTTRFIGV-C-GSMEADRK 288 (467)
Q Consensus 214 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~~~~~l~~~~~~~s~iiiTtR~~~~-~-~~~~~~~~ 288 (467)
... ...+++.+|++||++... ....+...+ .....++.+|+||....- . ........
T Consensus 98 ~~~-----------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~l-e~~~~~~~iI~~~n~~~~l~~~l~sR~~~ 159 (324)
T 3u61_B 98 SAA-----------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFM-EAYSSNCSIIITANNIDGIIKPLQSRCRV 159 (324)
T ss_dssp HBC-----------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHH-HHHGGGCEEEEEESSGGGSCTTHHHHSEE
T ss_pred hhc-----------------ccCCCCeEEEEECCcccCcHHHHHHHHHHH-HhCCCCcEEEEEeCCccccCHHHHhhCcE
Confidence 000 012367899999997543 333333322 122245677777765431 1 11111246
Q ss_pred cccCCCCHHHHHHHH-------HHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHH
Q 037625 289 FLVACLSEKDAWELF-------REKVGEETLKSDHDIAELAQIVANECGGLPLALITI 339 (467)
Q Consensus 289 ~~l~~L~~~e~~~lf-------~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 339 (467)
+++.+++.++-.+++ ...+.......++ .+....|++.++|.+-.+...
T Consensus 160 i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~~~ 215 (324)
T 3u61_B 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTIGE 215 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHHHH
Confidence 889999988844333 2222222211111 256778888899887644433
No 40
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.60 E-value=4.2e-07 Score=85.93 Aligned_cols=180 Identities=16% Similarity=0.168 Sum_probs=105.1
Q ss_pred CccccchHHHHHHHHHHh----------c--CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHH
Q 037625 135 RTVVGLQSQLEQVWRCLA----------E--ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 202 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~----------~--~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 202 (467)
..++|.+..++.|...+. . ...+.+.|+|++|+|||+||+.+++.. ... .+.++. .
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~---~~~v~~------~ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSS------S 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCE---EEEEEH------H
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCC---EEEEch------H
Confidence 568999999999988773 1 123569999999999999999999986 222 222322 1
Q ss_pred HHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh-cCCcEEEEeCCCCChh-------------hhhhhccCCC--CCCCC
Q 037625 203 KIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL-REKRIVLLLDDIWERV-------------DLTKVGVPLS--GPKNT 266 (467)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~-------------~~~~~~~~l~--~~~~~ 266 (467)
++. .. ...........+.... ..++.+|+||+++... ....+...+. .....
T Consensus 86 ~l~----~~--------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 86 DLV----SK--------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp HHH----TT--------TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred HHh----hc--------ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 111 10 0111222333333332 4567899999996321 0122211110 12334
Q ss_pred CceEEEecCChhhhh---hcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCC-cHHHHHHHH
Q 037625 267 TSKVVFTTRFIGVCG---SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGL-PLALITIGR 341 (467)
Q Consensus 267 ~s~iiiTtR~~~~~~---~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~-Plai~~~~~ 341 (467)
+..||.||....... .......+.+...+.++-.+++...+.......+ ......|++.+.|. +-.|..+..
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT---KEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC---HHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 566666776543210 0123456778889999999999998875442222 24566888888874 555555543
No 41
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.60 E-value=2.9e-06 Score=82.38 Aligned_cols=179 Identities=12% Similarity=0.085 Sum_probs=100.8
Q ss_pred CccccchHHHHHHHHHHhc------------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHH
Q 037625 135 RTVVGLQSQLEQVWRCLAE------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 202 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~------------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 202 (467)
..++|.+..++.|...+.. ...+.+.|+|++|+|||+||+.+++.. .. ..+.++.+.-..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~---~~~~v~~~~l~~-- 186 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NA---TFFNISAASLTS-- 186 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEECSCCC----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cC---cEEEeeHHHhhc--
Confidence 5689999999999888731 234689999999999999999999876 22 223333222110
Q ss_pred HHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh-cCCcEEEEeCCCCCh-------------hhhhhhccC---CCCCCC
Q 037625 203 KIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL-REKRIVLLLDDIWER-------------VDLTKVGVP---LSGPKN 265 (467)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-------------~~~~~~~~~---l~~~~~ 265 (467)
.. .... ......+.... ...+.+|+||+++.. .....+... +.....
T Consensus 187 ~~---------------~g~~-~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 187 KY---------------VGEG-EKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp --------------------C-HHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred cc---------------cchH-HHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 00 0011 12222222222 345689999999632 001111111 101122
Q ss_pred CCceEEEecCChhhh--hhc-CCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcH-HHHHHH
Q 037625 266 TTSKVVFTTRFIGVC--GSM-EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPL-ALITIG 340 (467)
Q Consensus 266 ~~s~iiiTtR~~~~~--~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~~ 340 (467)
....||.||...... ... .....+.+...+.++..+++...+........ .+....|++.+.|..- .|..+.
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~---~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT---QKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 345566666543221 111 23346778889999999999988765432222 2456788889988654 555544
No 42
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.60 E-value=1.8e-06 Score=80.56 Aligned_cols=179 Identities=14% Similarity=0.103 Sum_probs=101.2
Q ss_pred CccccchHHHHHHHHHHhc------------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHH
Q 037625 135 RTVVGLQSQLEQVWRCLAE------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 202 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~------------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 202 (467)
..++|.+..++.|.+.+.. ...+.+.|+|++|+||||+|+.+++.. .. ..+.++.+....
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~---~~~~i~~~~l~~-- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SA---TFLNISAASLTS-- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TC---EEEEEESTTTSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CC---CeEEeeHHHHhh--
Confidence 5689999999999887632 235689999999999999999999876 22 223333322110
Q ss_pred HHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHH-hcCCcEEEEeCCCCChh-------------hhhhhc---cCCC-CCC
Q 037625 203 KIQEDIGKKIGLVGDSWKSRSVEEKALDIFRS-LREKRIVLLLDDIWERV-------------DLTKVG---VPLS-GPK 264 (467)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~-------------~~~~~~---~~l~-~~~ 264 (467)
. ...........+... ...++.+|+||+++... ....+. ..+. ...
T Consensus 93 ---------------~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 93 ---------------K-YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp ---------------S-SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred ---------------c-ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 011122233333332 24567899999995320 001111 1110 011
Q ss_pred CCCceEEEecCChhhh-h--hcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcH-HHHHHH
Q 037625 265 NTTSKVVFTTRFIGVC-G--SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPL-ALITIG 340 (467)
Q Consensus 265 ~~~s~iiiTtR~~~~~-~--~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~~ 340 (467)
+.+..||.||...... . .......+.+...+.++...++...+.......+ .+....+++.+.|.+- .+..+.
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD---TEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 2345666677654221 1 0023356677778888888888877654321112 2456788889999876 554444
No 43
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.58 E-value=5.2e-07 Score=86.42 Aligned_cols=180 Identities=17% Similarity=0.168 Sum_probs=103.2
Q ss_pred CccccchHHHHHHHHHHhc------------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHH
Q 037625 135 RTVVGLQSQLEQVWRCLAE------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 202 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~------------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 202 (467)
..++|.+..++.|...+.. ...+-|.|+|++|+|||+||+.+++.. ... .+.++.+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~---~~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCE---EEEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCC---EEEeeHH------
Confidence 4689999999998887631 123458999999999999999999987 222 2223221
Q ss_pred HHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHH-hcCCcEEEEeCCCCChh-------------hhhhhccCCC--CCCCC
Q 037625 203 KIQEDIGKKIGLVGDSWKSRSVEEKALDIFRS-LREKRIVLLLDDIWERV-------------DLTKVGVPLS--GPKNT 266 (467)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~-------------~~~~~~~~l~--~~~~~ 266 (467)
++. ... .... ......+... -..++.+|+||+++... ....+...+. .....
T Consensus 119 ~l~----~~~-------~g~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 119 DLV----SKW-------MGES-EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp HHH----SCC----------C-HHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred HHh----hhh-------cchH-HHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 111 100 1111 2222333332 24578999999997421 0122211110 11234
Q ss_pred CceEEEecCChhhh---hhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCC-cHHHHHHHH
Q 037625 267 TSKVVFTTRFIGVC---GSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGL-PLALITIGR 341 (467)
Q Consensus 267 ~s~iiiTtR~~~~~---~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~-Plai~~~~~ 341 (467)
+..||.||...... -.......+.+...+.++-.+++...+.......+ ......|++.+.|. +--|..+..
T Consensus 187 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~---~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT---KEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 56666677644221 11134456778899999999999988865432222 24567888899884 545655543
No 44
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.57 E-value=2.3e-06 Score=79.95 Aligned_cols=174 Identities=15% Similarity=0.184 Sum_probs=100.5
Q ss_pred CccccchHHHHHHHHHHhc-------------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCH
Q 037625 135 RTVVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 201 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~-------------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 201 (467)
..++|.+..++.|.+++.. ...+.+.|+|++|+|||+||+.+++.. ... .+.+ +.
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~---~i~v------~~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN---FISI------KG 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCE---EEEE------CH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CCC---EEEE------Eh
Confidence 4689999988888877642 245679999999999999999999976 221 2222 22
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCChh----------------hhhhhccCCC-CCC
Q 037625 202 EKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWERV----------------DLTKVGVPLS-GPK 264 (467)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~~~~~l~-~~~ 264 (467)
.++.... .+.. . ......+.......+.+|+||+++... ....+...+. ...
T Consensus 83 ~~l~~~~---~g~~-----~---~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 83 PELLTMW---FGES-----E---ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp HHHHHHH---HTTC-----T---THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred HHHHhhh---cCch-----H---HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 3333222 1111 1 111122222334568999999996311 0122211110 012
Q ss_pred CCCceEEEecCChhhh-h-hc---CCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHH
Q 037625 265 NTTSKVVFTTRFIGVC-G-SM---EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLA 335 (467)
Q Consensus 265 ~~~s~iiiTtR~~~~~-~-~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pla 335 (467)
..+..||.||...... . .. .....+.+...+.++-.+++...+.......+.++ ..++..+.|.|-+
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 3456777777654321 1 11 23356789999999999999888765443222233 3455667777654
No 45
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.55 E-value=4.3e-06 Score=82.52 Aligned_cols=180 Identities=17% Similarity=0.191 Sum_probs=102.5
Q ss_pred CccccchHHHHHHHHHHh------------cCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHH
Q 037625 135 RTVVGLQSQLEQVWRCLA------------EESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 202 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~------------~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 202 (467)
..++|.+..++.|...+. ....+.+.|+|++|+|||+||+.+++.. .. .-++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~---~~----~~~~~v~~~~--- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---NN----STFFSISSSD--- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC---CS----SEEEEECCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc---CC----CCEEEEeHHH---
Confidence 568999999999888763 1234679999999999999999999876 11 1123333221
Q ss_pred HHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHH-hcCCcEEEEeCCCCCh-------------hhhhhhccCCCC--CCCC
Q 037625 203 KIQEDIGKKIGLVGDSWKSRSVEEKALDIFRS-LREKRIVLLLDDIWER-------------VDLTKVGVPLSG--PKNT 266 (467)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~-------------~~~~~~~~~l~~--~~~~ 266 (467)
+.... .+. ...... .+... -..++.+|+||+++.. .....+...+.. ....
T Consensus 204 -l~~~~---~g~-----~~~~~~----~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 270 (444)
T 2zan_A 204 -LVSKW---LGE-----SEKLVK----NLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 270 (444)
T ss_dssp -----------------CCCTHH----HHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCS
T ss_pred -HHhhh---cch-----HHHHHH----HHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCC
Confidence 11110 110 111122 22222 2356889999999742 111222222211 1234
Q ss_pred CceEEEecCChhhh--h-hcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCC-cHHHHHHH
Q 037625 267 TSKVVFTTRFIGVC--G-SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGL-PLALITIG 340 (467)
Q Consensus 267 ~s~iiiTtR~~~~~--~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~-Plai~~~~ 340 (467)
+..||.||...... . .......+.+...+.++-..+|...+.......+ ......|++.+.|. +-.|..+.
T Consensus 271 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 271 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT---EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp SCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 56667677644321 1 1123456778888899999999988765432111 24566888899985 54555554
No 46
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.43 E-value=1.8e-06 Score=82.68 Aligned_cols=172 Identities=18% Similarity=0.202 Sum_probs=100.3
Q ss_pred CccccchHHHHHHHHHHhc-------------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCH
Q 037625 135 RTVVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 201 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~-------------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 201 (467)
.++.|.+..+++|.+.+.- ...+-|.++||+|+|||.||+++++.. ...| +.++.+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f---~~v~~s~l~s- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCKF---IRVSGAELVQ- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCEE---EEEEGGGGSC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCCc---eEEEhHHhhc-
Confidence 4567888888888776531 134568999999999999999999987 3332 3333221110
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh-cCCcEEEEeCCCCCh----------h------hhhhhccCCC-CC
Q 037625 202 EKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL-REKRIVLLLDDIWER----------V------DLTKVGVPLS-GP 263 (467)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~------~~~~~~~~l~-~~ 263 (467)
.+.. ..+..+..++..- ...+++|++|+++.. . .+..+...+. ..
T Consensus 221 ----------------k~vG-ese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 221 ----------------KYIG-EGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp ----------------SSTT-HHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred ----------------cccc-hHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 0011 1122233333322 457899999999631 0 1111211110 02
Q ss_pred CCCCceEEEecCChhh-----hhhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcH
Q 037625 264 KNTTSKVVFTTRFIGV-----CGSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPL 334 (467)
Q Consensus 264 ~~~~s~iiiTtR~~~~-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl 334 (467)
...+..||.||..... .+.-..+..+.++..+.++-.++|+.++.........++ ..|++.+.|.--
T Consensus 284 ~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl----~~lA~~t~G~SG 355 (405)
T 4b4t_J 284 TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINL----RKVAEKMNGCSG 355 (405)
T ss_dssp CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCH----HHHHHHCCSCCH
T ss_pred CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHCCCCCH
Confidence 3445566777764432 211135668889999999999999888766543333333 466777887643
No 47
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.42 E-value=2.5e-07 Score=79.65 Aligned_cols=46 Identities=24% Similarity=0.375 Sum_probs=41.7
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++||+.+++.+.+.+.....+.+.|+|++|+|||+||+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999987767788999999999999999999876
No 48
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.41 E-value=1.6e-06 Score=80.96 Aligned_cols=147 Identities=16% Similarity=0.130 Sum_probs=89.1
Q ss_pred cchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCC-CCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCCC
Q 037625 139 GLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESP-TNFDCVIWVVVSK-DLRLEKIQEDIGKKIGLVG 216 (467)
Q Consensus 139 Gr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~ 216 (467)
|-++.++.|.+.+.+++.+.+.++|++|+||||+|..+++...... .+.+. .+++.+. .....++ +++...+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~i-r~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDI-RTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHH-HHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHHH-HHHHHHHhhcc
Confidence 3455677788888877778899999999999999999987531111 23333 4444332 2232222 33333332111
Q ss_pred CCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEEecCCh-hhhhhcCCCcccccCC
Q 037625 217 DSWKSRSVEEKALDIFRSLREKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVFTTRFI-GVCGSMEADRKFLVAC 293 (467)
Q Consensus 217 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iiiTtR~~-~~~~~~~~~~~~~l~~ 293 (467)
..+++-++|+|+++. ....+.+...+ -..++.+.+|++|.+. .+...+... .+++.+
T Consensus 79 ------------------~~~~~kvviIdead~lt~~a~naLLk~L-Eep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~ 138 (305)
T 2gno_A 79 ------------------ELYTRKYVIVHDCERMTQQAANAFLKAL-EEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVV 138 (305)
T ss_dssp ------------------SSSSSEEEEETTGGGBCHHHHHHTHHHH-HSCCTTEEEEEEESCGGGSCHHHHTT-SEEEEC
T ss_pred ------------------ccCCceEEEeccHHHhCHHHHHHHHHHH-hCCCCCeEEEEEECChHhChHHHHce-eEeCCC
Confidence 124577999999974 33444454444 2334566777665443 333333333 899999
Q ss_pred CCHHHHHHHHHHHh
Q 037625 294 LSEKDAWELFREKV 307 (467)
Q Consensus 294 L~~~e~~~lf~~~~ 307 (467)
++.++..+++.+.+
T Consensus 139 l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 139 NVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998886
No 49
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.41 E-value=3.2e-06 Score=84.05 Aligned_cols=149 Identities=14% Similarity=0.130 Sum_probs=83.0
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCC----C-eEEEEEeCCCCCHHHHHHHHH
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNF----D-CVIWVVVSKDLRLEKIQEDIG 209 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f----~-~~~wv~~~~~~~~~~~~~~i~ 209 (467)
+.++||+.+++.+...+.......+.|+|++|+|||++|+.+++.... .... + ..+.++.+
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~-~~~p~~l~~~~~~~l~~~------------- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN-NEVPEILRDKRVMTLDMG------------- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHS-SCSCTTTSSCCEECC----------------
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHh-CCCChhhcCCeEEEeeCC-------------
Confidence 458999999999999998766667899999999999999999988621 1110 1 12222222
Q ss_pred HHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCChhhhhhhccCCCCCCCCCceEEEecCChhhh-------hh
Q 037625 210 KKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWERVDLTKVGVPLSGPKNTTSKVVFTTRFIGVC-------GS 282 (467)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iiiTtR~~~~~-------~~ 282 (467)
....+. ........ +...-..++.+|++| ........+...+ .....++|.+|...... ..
T Consensus 246 --~~~~g~--~e~~~~~~---~~~~~~~~~~iLfiD--~~~~a~~~L~~~L---~~g~v~vI~at~~~e~~~~~~~~~al 313 (468)
T 3pxg_A 246 --TKYRGE--FEDRLKKV---MDEIRQAGNIILFID--AAIDASNILKPSL---ARGELQCIGATTLDEYRKYIEKDAAL 313 (468)
T ss_dssp -----------CTTHHHH---HHHHHTCCCCEEEEC--C--------CCCT---TSSSCEEEEECCTTTTHHHHTTCSHH
T ss_pred --ccccch--HHHHHHHH---HHHHHhcCCeEEEEe--CchhHHHHHHHhh---cCCCEEEEecCCHHHHHHHhhcCHHH
Confidence 000000 00111111 222223567899999 2222222233333 23345666655544311 11
Q ss_pred cCCCcccccCCCCHHHHHHHHHHHhCC
Q 037625 283 MEADRKFLVACLSEKDAWELFREKVGE 309 (467)
Q Consensus 283 ~~~~~~~~l~~L~~~e~~~lf~~~~~~ 309 (467)
......+.+++++.++..+++......
T Consensus 314 ~~Rf~~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 314 ERRFQPIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp HHSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred HHhCccceeCCCCHHHHHHHHHHHHHH
Confidence 112236889999999999999976643
No 50
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.36 E-value=4.8e-06 Score=80.96 Aligned_cols=171 Identities=16% Similarity=0.229 Sum_probs=98.3
Q ss_pred CccccchHHHHHHHHHHhc-------------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCH
Q 037625 135 RTVVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 201 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~-------------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 201 (467)
.++.|.+..+++|.+.+.- ...+-|.++||+|+|||+||+++++.. ... .+.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~---~~~v~~s~l~s- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GAN---FIFSPASGIVD- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGTCC-
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehhhhcc-
Confidence 4568888888888776541 134679999999999999999999987 322 23333222110
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHH-hcCCcEEEEeCCCCCh------------h----hhhhhccCCC-CC
Q 037625 202 EKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRS-LREKRIVLLLDDIWER------------V----DLTKVGVPLS-GP 263 (467)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~------------~----~~~~~~~~l~-~~ 263 (467)
.+... .......++.. -...+++|++|+++.. . .+..+...+. ..
T Consensus 254 ----------------k~~Ge-se~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 254 ----------------KYIGE-SARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp ----------------SSSSH-HHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred ----------------ccchH-HHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 00111 12222333332 2457899999999631 0 1112211110 12
Q ss_pred CCCCceEEEecCChhhh-h-hcC---CCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCc
Q 037625 264 KNTTSKVVFTTRFIGVC-G-SME---ADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLP 333 (467)
Q Consensus 264 ~~~~s~iiiTtR~~~~~-~-~~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 333 (467)
...+..||.||...... . ... .+..+.++..+.++-.++|+.++.......+.++ ..+++.+.|.-
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSCC
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCCC
Confidence 33456677777644331 1 112 3457888888888888999887765443333333 45677787754
No 51
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.35 E-value=3.9e-06 Score=81.42 Aligned_cols=171 Identities=19% Similarity=0.228 Sum_probs=99.0
Q ss_pred CccccchHHHHHHHHHHhc-------------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCH
Q 037625 135 RTVVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 201 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~-------------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 201 (467)
.++.|.+..+++|.+.+.- ...+-|.++|++|+|||+||+.+++.. ...| +.++.+.-.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~f---i~vs~s~L~-- 280 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT---DATF---IRVIGSELV-- 280 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCEE---EEEEGGGGC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCCe---EEEEhHHhh--
Confidence 3578888888888775421 245678999999999999999999987 3222 333322110
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH-HhcCCcEEEEeCCCCChh----------------hhhhhccCCC-CC
Q 037625 202 EKIQEDIGKKIGLVGDSWKSRSVEEKALDIFR-SLREKRIVLLLDDIWERV----------------DLTKVGVPLS-GP 263 (467)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~----------------~~~~~~~~l~-~~ 263 (467)
..+... .+.....++. .-...+++|++|+++... ....+...+. ..
T Consensus 281 ---------------sk~vGe-sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 344 (467)
T 4b4t_H 281 ---------------QKYVGE-GARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD 344 (467)
T ss_dssp ---------------CCSSSH-HHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC
T ss_pred ---------------cccCCH-HHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC
Confidence 000111 1222223333 234578999999986310 0111111110 12
Q ss_pred CCCCceEEEecCChhh-----hhhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCc
Q 037625 264 KNTTSKVVFTTRFIGV-----CGSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLP 333 (467)
Q Consensus 264 ~~~~s~iiiTtR~~~~-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 333 (467)
...+..||.||..... .+.-..+..+.+...+.++-.++|+.++.........++ ..|++.|.|.-
T Consensus 345 ~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 345 PRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW----ELISRLCPNST 415 (467)
T ss_dssp CTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSCC
T ss_pred CCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCCC
Confidence 3345566667754332 111135668889989999999999988766543333333 45677788764
No 52
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.32 E-value=1.5e-06 Score=71.69 Aligned_cols=45 Identities=24% Similarity=0.293 Sum_probs=36.3
Q ss_pred ccccchHHHHHHHHHHhc--CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 136 TVVGLQSQLEQVWRCLAE--ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~--~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.++|+...++++.+.+.. .....|.|+|++|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999888753 333467899999999999999999875
No 53
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.31 E-value=6.1e-05 Score=71.34 Aligned_cols=172 Identities=19% Similarity=0.187 Sum_probs=92.9
Q ss_pred CccccchHHHHHHHHHHhc-----CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 037625 135 RTVVGLQSQLEQVWRCLAE-----ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIG 209 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~-----~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 209 (467)
..++|.+..++.+...+.. .....+.|+|++|+||||||+.+++.. ...|. ..+.+-....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~---~~sg~~~~~~-------- 90 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIH---VTSGPVLVKQ-------- 90 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEE---EEETTTCCSH--------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEE---EEechHhcCH--------
Confidence 4678988888877766653 234679999999999999999999987 22211 1111000011
Q ss_pred HHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh--hhhhhhccC---CCCC----CC----------CCceE
Q 037625 210 KKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER--VDLTKVGVP---LSGP----KN----------TTSKV 270 (467)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~---l~~~----~~----------~~s~i 270 (467)
... ..+...+. ++.++++|++... ...+.+... .... .+ +...+
T Consensus 91 ---------------~~l-~~~~~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 91 ---------------GDM-AAILTSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp ---------------HHH-HHHHHHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred ---------------HHH-HHHHHHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 111 11111222 3446777877531 111111100 0000 00 11223
Q ss_pred E-EecCChhhhhhc--CCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHHH
Q 037625 271 V-FTTRFIGVCGSM--EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITIG 340 (467)
Q Consensus 271 i-iTtR~~~~~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 340 (467)
+ .|++...+...+ .....+.+++.+.++..+++.+.+.......+ .+.+..|++.+.|.|-.+..+.
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~---~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIE---DAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBC---HHHHHHHHHTSTTCHHHHHHHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHhcCCChHHHHHHH
Confidence 3 344443331111 12235789999999999999987643221212 3568899999999997654443
No 54
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.30 E-value=2.5e-06 Score=91.33 Aligned_cols=154 Identities=14% Similarity=0.207 Sum_probs=85.8
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCC--CCC--CCeEEEEEeCCCCCHHHHHHHHHH
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLES--PTN--FDCVIWVVVSKDLRLEKIQEDIGK 210 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~--~~~--f~~~~wv~~~~~~~~~~~~~~i~~ 210 (467)
+.++||+.+++.+.+.+.....+.+.|+|++|+|||+||+.+++..... ... -..+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---------- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---------- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------------
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----------
Confidence 4589999999999999987666678999999999999999999876211 011 12334443321100
Q ss_pred HhcCCCCCCCCcCHHHHHHHHHHHhc--CCcEEEEeCCCCChh-------hhh---hhccCCCCCCCCCceEEEecCChh
Q 037625 211 KIGLVGDSWKSRSVEEKALDIFRSLR--EKRIVLLLDDIWERV-------DLT---KVGVPLSGPKNTTSKVVFTTRFIG 278 (467)
Q Consensus 211 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-------~~~---~~~~~l~~~~~~~s~iiiTtR~~~ 278 (467)
.. . ...........+...+. +++.+|++|+++... .++ .+...+ ...+..+|.+|....
T Consensus 240 g~-----~-~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l---~~~~i~~I~at~~~~ 310 (854)
T 1qvr_A 240 GA-----K-YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL---ARGELRLIGATTLDE 310 (854)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH---HTTCCCEEEEECHHH
T ss_pred cC-----c-cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH---hCCCeEEEEecCchH
Confidence 00 0 01122333333433332 367999999996421 011 111111 123445665555332
Q ss_pred h------hhhcCCCcccccCCCCHHHHHHHHHHHh
Q 037625 279 V------CGSMEADRKFLVACLSEKDAWELFREKV 307 (467)
Q Consensus 279 ~------~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 307 (467)
. .........+.+++++.++..+++....
T Consensus 311 ~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 311 YREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred HhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 2 1111222358899999999999997543
No 55
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.29 E-value=6.1e-05 Score=68.43 Aligned_cols=177 Identities=19% Similarity=0.186 Sum_probs=94.5
Q ss_pred CccccchHHHHHHHHHHh---c---------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHH
Q 037625 135 RTVVGLQSQLEQVWRCLA---E---------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 202 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~---~---------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 202 (467)
..++|.+..++++.+.+. . ...+-+.|+|++|+||||||+.+++.. ...| +.++.+.-..
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~---~~i~~~~~~~-- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSDFVE-- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCE---EEECSCSSTT--
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCE---EEEeHHHHHH--
Confidence 568999888777765542 1 123468999999999999999999876 2222 3332221100
Q ss_pred HHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh----------------hhhhhhccCCCC-CCC
Q 037625 203 KIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER----------------VDLTKVGVPLSG-PKN 265 (467)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~~~~~l~~-~~~ 265 (467)
.............+.......+.++++|+++.. .....+...+.. ...
T Consensus 84 ---------------~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 84 ---------------MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp ---------------SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred ---------------HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 001112222222233333456789999998421 011111111100 123
Q ss_pred CCceEEEecCChhh-hhh-c---CCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCC-CcHHHHH
Q 037625 266 TTSKVVFTTRFIGV-CGS-M---EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGG-LPLALIT 338 (467)
Q Consensus 266 ~~s~iiiTtR~~~~-~~~-~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G-~Plai~~ 338 (467)
.+..||.||..... ... . .....+.+...+.++-.+++...+.......+.. ...++..+.| ++--|..
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~----~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGFSGADLAN 223 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcccc----HHHHHHHcCCCCHHHHHH
Confidence 45567777765432 111 1 1234677888888888888887765433222221 2346666777 5654443
No 56
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.28 E-value=1.9e-06 Score=83.78 Aligned_cols=171 Identities=18% Similarity=0.206 Sum_probs=96.1
Q ss_pred CccccchHHHHHHHHHHh----c---------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCH
Q 037625 135 RTVVGLQSQLEQVWRCLA----E---------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 201 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~----~---------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 201 (467)
.++.|.+..+++|.+.+. . ...+-|.++||+|+|||.||+++++.. ... .+.++.+.-.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l~-- 252 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT---NAT---FLKLAAPQLV-- 252 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGC--
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCC---EEEEehhhhh--
Confidence 457899998888877643 1 135679999999999999999999987 322 2233322110
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh-cCCcEEEEeCCCCCh-------h---------hhhhhccCCCC-C
Q 037625 202 EKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL-REKRIVLLLDDIWER-------V---------DLTKVGVPLSG-P 263 (467)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-------~---------~~~~~~~~l~~-~ 263 (467)
..+.. ..+.....++..- ...+++|++|+++.. . ....+...+.. .
T Consensus 253 ---------------~~~vG-ese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 253 ---------------QMYIG-EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp ---------------SSCSS-HHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred ---------------hcccc-hHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 00011 1122333333322 346899999998521 0 01112111101 2
Q ss_pred CCCCceEEEecCChhhh-h-hc---CCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCc
Q 037625 264 KNTTSKVVFTTRFIGVC-G-SM---EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLP 333 (467)
Q Consensus 264 ~~~~s~iiiTtR~~~~~-~-~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 333 (467)
...+..||.||...... . .. ..+..+.++..+.++-.++|+.++.......+-++ ..|++.+.|.-
T Consensus 317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl----~~lA~~t~G~s 387 (434)
T 4b4t_M 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW----QELARSTDEFN 387 (434)
T ss_dssp SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCH----HHHHHHCSSCC
T ss_pred CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCCC
Confidence 23345666677644331 1 11 23457888888888888888877654332232233 45677787754
No 57
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.27 E-value=1.2e-06 Score=80.44 Aligned_cols=173 Identities=20% Similarity=0.177 Sum_probs=90.7
Q ss_pred CccccchHHHHHHHHHHhc------------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHH
Q 037625 135 RTVVGLQSQLEQVWRCLAE------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 202 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~------------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 202 (467)
..++|.+..++.+.+.+.. ...+-+.|+|++|+|||+||+.+++.. ...|- .+..+.-.+
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~---~v~~~~~~~-- 82 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---HVPFF---SMGGSSFIE-- 82 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH---TCCCC---CCCSCTTTT--
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEE---EechHHHHH--
Confidence 5689998888777776541 123347899999999999999999976 22221 111111000
Q ss_pred HHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCChh-----------------hhhhhccCCCCC--
Q 037625 203 KIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWERV-----------------DLTKVGVPLSGP-- 263 (467)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------------~~~~~~~~l~~~-- 263 (467)
.. .+. ........ +......++.+|+|||++... .+..+...+...
T Consensus 83 --------~~--~~~--~~~~~~~~---~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (268)
T 2r62_A 83 --------MF--VGL--GASRVRDL---FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS 147 (268)
T ss_dssp --------SC--SSS--CSSSSSTT---HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC
T ss_pred --------hh--cch--HHHHHHHH---HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc
Confidence 00 000 00011111 111223457899999995321 122222222111
Q ss_pred CCCCceEEEecCChhhh--hhc---CCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcH
Q 037625 264 KNTTSKVVFTTRFIGVC--GSM---EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPL 334 (467)
Q Consensus 264 ~~~~s~iiiTtR~~~~~--~~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl 334 (467)
......||.||...... ... .....+.+.+.+.++-.+++...+.......... ...|++.+.|.|-
T Consensus 148 ~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~g~~g 219 (268)
T 2r62_A 148 ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVN----LQEVAKLTAGLAG 219 (268)
T ss_dssp SCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCC----TTTTTSSSCSSCH
T ss_pred CCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccC----HHHHHHHcCCCCH
Confidence 11234566677654321 111 2335688899999999999988775433222111 2235555666654
No 58
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.27 E-value=4e-06 Score=80.57 Aligned_cols=171 Identities=19% Similarity=0.246 Sum_probs=97.6
Q ss_pred CccccchHHHHHHHHHHhc-------------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCH
Q 037625 135 RTVVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 201 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~-------------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 201 (467)
.++.|.+..+++|.+.+.- ...+-|.++||+|+|||.||+++++.. ...| +.++.+.-.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~f---i~v~~s~l~-- 253 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT---SATF---LRIVGSELI-- 253 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCEE---EEEESGGGC--
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh---CCCE---EEEEHHHhh--
Confidence 4567888888888776531 134679999999999999999999987 3222 223222110
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh-cCCcEEEEeCCCCCh----------------hhhhhhccCCC-CC
Q 037625 202 EKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL-REKRIVLLLDDIWER----------------VDLTKVGVPLS-GP 263 (467)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------------~~~~~~~~~l~-~~ 263 (467)
..+. ...+.....++... ...+++|++|+++.. ..+..+...+. ..
T Consensus 254 ---------------sk~v-Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 254 ---------------QKYL-GDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp ---------------CSSS-SHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred ---------------hccC-chHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 0001 11222333333332 457899999998631 01111111110 12
Q ss_pred CCCCceEEEecCChhhh-h-hc---CCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCc
Q 037625 264 KNTTSKVVFTTRFIGVC-G-SM---EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLP 333 (467)
Q Consensus 264 ~~~~s~iiiTtR~~~~~-~-~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 333 (467)
...+..||.||...... . .. ..+..+.+...+.++-.++|..++.......+.++ ..|++.+.|.-
T Consensus 318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~GfS 388 (437)
T 4b4t_I 318 DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDLS 388 (437)
T ss_dssp CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSCC
T ss_pred CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCCC
Confidence 33455666677644331 1 11 22346788888888889999888765543333333 45667787754
No 59
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.26 E-value=3.8e-06 Score=83.58 Aligned_cols=178 Identities=17% Similarity=0.159 Sum_probs=101.4
Q ss_pred CccccchHHHHHHHHHHhc-------------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCH
Q 037625 135 RTVVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 201 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~-------------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 201 (467)
..++|.+..+++|.+++.. ...+-+.|+|++|+|||++|+.+++.. ... .+.+++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~~---fv~vn~------ 271 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLING------ 271 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SSE---EEEEEH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CCC---EEEEEc------
Confidence 4589999999998887642 234579999999999999999998876 222 233332
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh-------------hhhhhhccCCC-CCCCCC
Q 037625 202 EKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER-------------VDLTKVGVPLS-GPKNTT 267 (467)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------------~~~~~~~~~l~-~~~~~~ 267 (467)
.++ ...+ ...........+.....+++.+|+||+++.. .....+...+. .....+
T Consensus 272 ~~l----~~~~-------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 272 PEI----MSKL-------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp HHH----HTSC-------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred hHh----hhhh-------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 111 1100 1111122222333334567889999999411 11112211110 022345
Q ss_pred ceEEEecCChhh-hhh----cCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCC-cHHHHHH
Q 037625 268 SKVVFTTRFIGV-CGS----MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGL-PLALITI 339 (467)
Q Consensus 268 s~iiiTtR~~~~-~~~----~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~-Plai~~~ 339 (467)
..||.||..... ... ......+.+...+.++-.+++...+..........+ ..++..+.|. +-.|..+
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhH----HHHHHHccCCcHHHHHHH
Confidence 666667765422 111 123346889999999999999988765443333333 3566667764 4444443
No 60
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.20 E-value=1.5e-05 Score=84.52 Aligned_cols=154 Identities=18% Similarity=0.275 Sum_probs=91.3
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCC---CCCeEEEE-EeCCCCCHHHHHHHHHH
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPT---NFDCVIWV-VVSKDLRLEKIQEDIGK 210 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~---~f~~~~wv-~~~~~~~~~~~~~~i~~ 210 (467)
+.++||+.+++.+.+.|.......+.|+|++|+|||++|+.+++......- .....++. +.+..
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------------
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------------
Confidence 468999999999999998776678899999999999999999987621110 11222321 11110
Q ss_pred HhcCCCCCCCCcCHHHHHHHHHHHhc-CCcEEEEeCCCCCh----------hh-hhhhccCCCCCCCCCceEEEecCChh
Q 037625 211 KIGLVGDSWKSRSVEEKALDIFRSLR-EKRIVLLLDDIWER----------VD-LTKVGVPLSGPKNTTSKVVFTTRFIG 278 (467)
Q Consensus 211 ~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~----------~~-~~~~~~~l~~~~~~~s~iiiTtR~~~ 278 (467)
+ .+.. .....+.....+.+.+. .++.+|++|+++.. .+ ...+...+ ...+..+|.+|....
T Consensus 254 -~--~~~~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l---~~~~~~~I~at~~~~ 326 (758)
T 1r6b_X 254 -L--AGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL---SSGKIRVIGSTTYQE 326 (758)
T ss_dssp ----CCCC-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCS---SSCCCEEEEEECHHH
T ss_pred -h--cccc-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHH---hCCCeEEEEEeCchH
Confidence 0 0000 12233444444444443 35789999999643 11 22233333 234556666665443
Q ss_pred hhhhc-------CCCcccccCCCCHHHHHHHHHHHh
Q 037625 279 VCGSM-------EADRKFLVACLSEKDAWELFREKV 307 (467)
Q Consensus 279 ~~~~~-------~~~~~~~l~~L~~~e~~~lf~~~~ 307 (467)
..... .....+.+.+++.++..+++....
T Consensus 327 ~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 327 FSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 21111 111357899999999998888654
No 61
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.18 E-value=1.5e-05 Score=84.25 Aligned_cols=150 Identities=13% Similarity=0.099 Sum_probs=83.9
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCC---CCeEE-EEEeCCCCCHHHHHHHHHH
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTN---FDCVI-WVVVSKDLRLEKIQEDIGK 210 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~---f~~~~-wv~~~~~~~~~~~~~~i~~ 210 (467)
+.++||+.+++.+...+......-+.++|++|+|||++|+.+++........ .++.+ .++.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------------
Confidence 4589999999999999987666678999999999999999999886211111 11111 1111
Q ss_pred HhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCChhhhhhhccCCCCCCCCCceEEEecCChhhh-------hhc
Q 037625 211 KIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWERVDLTKVGVPLSGPKNTTSKVVFTTRFIGVC-------GSM 283 (467)
Q Consensus 211 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iiiTtR~~~~~-------~~~ 283 (467)
+....+....... ..+......++.+|++|. .......+...+ .....++|.||...... ...
T Consensus 245 --g~~~~G~~e~~l~---~~~~~~~~~~~~iLfiD~--~~~~~~~L~~~l---~~~~v~~I~at~~~~~~~~~~~d~al~ 314 (758)
T 3pxi_A 245 --GTKYRGEFEDRLK---KVMDEIRQAGNIILFIDA--AIDASNILKPSL---ARGELQCIGATTLDEYRKYIEKDAALE 314 (758)
T ss_dssp ----------CTTHH---HHHHHHHTCCCCEEEECC----------CCCT---TSSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred --cccccchHHHHHH---HHHHHHHhcCCEEEEEcC--chhHHHHHHHHH---hcCCEEEEeCCChHHHHHHhhccHHHH
Confidence 0000000011111 222222335778999992 222222233333 23456667666544310 011
Q ss_pred CCCcccccCCCCHHHHHHHHHHHhCC
Q 037625 284 EADRKFLVACLSEKDAWELFREKVGE 309 (467)
Q Consensus 284 ~~~~~~~l~~L~~~e~~~lf~~~~~~ 309 (467)
.....+.+++++.++..+++......
T Consensus 315 rRf~~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 315 RRFQPIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred hhCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 11246889999999999999976543
No 62
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.17 E-value=1.4e-05 Score=77.48 Aligned_cols=171 Identities=19% Similarity=0.248 Sum_probs=92.6
Q ss_pred CccccchHHHHHHHHHHhc-------------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCH
Q 037625 135 RTVVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 201 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~-------------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 201 (467)
.++.|.+..+++|.+.+.- ...+-+.++||+|+|||+||+++++.. ... .+.++.+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~---~~~v~~~~l~~- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST---KAA---FIRVNGSEFVH- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCE---EEEEEGGGTCC-
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---eEEEecchhhc-
Confidence 4578899888888776531 134568999999999999999999987 322 23333322110
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH-HhcCCcEEEEeCCCCCh------------h----hhhhhccCCC-CC
Q 037625 202 EKIQEDIGKKIGLVGDSWKSRSVEEKALDIFR-SLREKRIVLLLDDIWER------------V----DLTKVGVPLS-GP 263 (467)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~------------~----~~~~~~~~l~-~~ 263 (467)
.+...+ ...+..++. .-...++++++|+++.. . .+..+...+. ..
T Consensus 245 ----------------~~~Ge~-e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~ 307 (428)
T 4b4t_K 245 ----------------KYLGEG-PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD 307 (428)
T ss_dssp ----------------SSCSHH-HHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC
T ss_pred ----------------cccchh-HHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC
Confidence 001111 222223332 22457899999998521 0 1111211110 02
Q ss_pred CCCCceEEEecCChhh-----hhhcCCCcccccCCC-CHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCc
Q 037625 264 KNTTSKVVFTTRFIGV-----CGSMEADRKFLVACL-SEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLP 333 (467)
Q Consensus 264 ~~~~s~iiiTtR~~~~-----~~~~~~~~~~~l~~L-~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 333 (467)
...+..||.||..... .+.-..+..+.+..+ +.++-..+|..++.......+.++ ..+++.+.|.-
T Consensus 308 ~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl----~~lA~~t~G~s 379 (428)
T 4b4t_K 308 QSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL----DSLIIRNDSLS 379 (428)
T ss_dssp SSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH----HHHHHHTTTCC
T ss_pred CCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHHCCCCC
Confidence 3345667777764432 111123346777655 455556677666654433333333 46677787754
No 63
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.14 E-value=1.7e-05 Score=74.17 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=38.6
Q ss_pred CccccchHHHHHHHHHHhc--------------CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 135 RTVVGLQSQLEQVWRCLAE--------------ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~--------------~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++|.+..++.+...+.. .....+.|+|++|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999998887754 234578899999999999999999876
No 64
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.13 E-value=2.6e-06 Score=73.06 Aligned_cols=118 Identities=17% Similarity=0.187 Sum_probs=62.4
Q ss_pred chHHHHHHHHHHhc---CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC
Q 037625 140 LQSQLEQVWRCLAE---ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVG 216 (467)
Q Consensus 140 r~~~~~~l~~~L~~---~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 216 (467)
....++.+.+++.+ .....+.|+|++|+|||||++.+++......+ . .++++ +..++...+........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g-~-~~~~~------~~~~~~~~~~~~~~~~~ 90 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG-I-RGYFF------DTKDLIFRLKHLMDEGK 90 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC-C-CCCEE------EHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC-C-eEEEE------EHHHHHHHHHHHhcCch
Confidence 33444555555543 23568999999999999999999987621111 1 22333 34455555544432211
Q ss_pred CCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCC--hhhh--hhhccCCCCCCCCCceEEEecCCh
Q 037625 217 DSWKSRSVEEKALDIFRSLREKRIVLLLDDIWE--RVDL--TKVGVPLSGPKNTTSKVVFTTRFI 277 (467)
Q Consensus 217 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~--~~~~~~l~~~~~~~s~iiiTtR~~ 277 (467)
. . . +.+.+. ++-+|||||++. ...+ ..+...+......+..+|+||...
T Consensus 91 ~-----~--~----~~~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 91 D-----T--K----FLKTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp C-----S--H----HHHHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred H-----H--H----HHHHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 0 0 1 122222 456899999973 2222 122221211122467788888743
No 65
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.13 E-value=1.9e-05 Score=77.92 Aligned_cols=172 Identities=17% Similarity=0.186 Sum_probs=97.0
Q ss_pred CccccchHHHHHHHHHHh---cC---------CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHH
Q 037625 135 RTVVGLQSQLEQVWRCLA---EE---------SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 202 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~---~~---------~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 202 (467)
.+++|.+..++++.+.+. .. ..+-+.|+|++|+|||+||+.+++.. ...| +.++.+.....
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPF---FHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCE---EEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCe---eeCCHHHHHHH-
Confidence 468999888777766543 21 13458899999999999999999976 2222 33333222110
Q ss_pred HHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh----------------hhhhhhccCCCC-CCC
Q 037625 203 KIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER----------------VDLTKVGVPLSG-PKN 265 (467)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------------~~~~~~~~~l~~-~~~ 265 (467)
............+.....+.+.+|+||+++.. ..+..+...+.. ...
T Consensus 89 ----------------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 89 ----------------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp ----------------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred ----------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 00111112222233344567899999999531 112222211100 123
Q ss_pred CCceEEEecCChhhhh--hc---CCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCc
Q 037625 266 TTSKVVFTTRFIGVCG--SM---EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLP 333 (467)
Q Consensus 266 ~~s~iiiTtR~~~~~~--~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 333 (467)
.+..||.||....... .. .....+.+++.+.++-.+++..++.......+.+ ...++..+.|+.
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 4566777776654321 11 2334777888888888888887776543222222 334777788877
No 66
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.07 E-value=2.8e-06 Score=74.36 Aligned_cols=58 Identities=29% Similarity=0.182 Sum_probs=38.1
Q ss_pred Cccccch----HHHHHHHHHHhcC----CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEe
Q 037625 135 RTVVGLQ----SQLEQVWRCLAEE----SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVV 195 (467)
Q Consensus 135 ~~~vGr~----~~~~~l~~~L~~~----~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 195 (467)
+.|++.. ..++.+.+++... ..+.+.|+|++|+|||+||+.+++... .....++|+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~---~~~~~~~~~~~ 90 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA---KRNVSSLIVYV 90 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEEEH
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEh
Confidence 3455543 3445555665543 116899999999999999999999872 22334566643
No 67
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.04 E-value=8.3e-06 Score=76.51 Aligned_cols=60 Identities=22% Similarity=0.370 Sum_probs=43.7
Q ss_pred CccccchHHHHHHHHHHhcC---------CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCC
Q 037625 135 RTVVGLQSQLEQVWRCLAEE---------SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK 197 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~---------~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 197 (467)
..++|.+..++.+...+... ....+.|+|++|+|||++|+.+++... ..-...+.++++.
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~---~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF---DTEEAMIRIDMTE 85 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH---SCGGGEEEEEGGG
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc---CCCcceEEeeccc
Confidence 35789999998888887642 135799999999999999999998762 1222345555544
No 68
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.02 E-value=2.5e-06 Score=70.11 Aligned_cols=46 Identities=13% Similarity=0.101 Sum_probs=34.7
Q ss_pred CccccchHHHHHHHHHHhc--CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 135 RTVVGLQSQLEQVWRCLAE--ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~--~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
-.++|++..++++.+.+.. .....|.|+|++|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 3578999998888888753 334568899999999999999988765
No 69
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.02 E-value=1.6e-06 Score=71.76 Aligned_cols=39 Identities=23% Similarity=0.309 Sum_probs=28.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeC
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVS 196 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 196 (467)
....+.|+|+.|+|||||++.++..... . -..+++++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~--g~~~~~~~~~ 73 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-A--GKNAAYIDAA 73 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-T--TCCEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-c--CCcEEEEcHH
Confidence 4568999999999999999999997722 1 1225666544
No 70
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.99 E-value=1.7e-05 Score=82.89 Aligned_cols=173 Identities=17% Similarity=0.170 Sum_probs=97.2
Q ss_pred CccccchHHHHHHHHHHh----c---------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCH
Q 037625 135 RTVVGLQSQLEQVWRCLA----E---------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 201 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~----~---------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 201 (467)
.++.|.+..+++|.+.+. . ...+-|.++|++|+|||+||+.+++.. ..+ .+.++.+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~---~~~v~~~----- 272 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGP----- 272 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCE---EEEEEHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCe---EEEEEhH-----
Confidence 346788888877777653 1 134579999999999999999999987 322 2333321
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhcCCcEEEEeCCCCCh-------------hhhhhhccCCCC-CCCCC
Q 037625 202 EKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLREKRIVLLLDDIWER-------------VDLTKVGVPLSG-PKNTT 267 (467)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------------~~~~~~~~~l~~-~~~~~ 267 (467)
++ . +. ........+...+.......+++|+||+++.. .....+...+.. ....+
T Consensus 273 -~l----~---sk----~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~ 340 (806)
T 3cf2_A 273 -EI----M---SK----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp -HH----H---SS----CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGC
T ss_pred -Hh----h---cc----cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCC
Confidence 11 1 00 01112222222233334567899999998631 001112111100 12234
Q ss_pred ceEEEecCChh-hhhhc----CCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcH
Q 037625 268 SKVVFTTRFIG-VCGSM----EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPL 334 (467)
Q Consensus 268 s~iiiTtR~~~-~~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl 334 (467)
..||.||.... +-..+ ..+..+.+...+.++-.++|..++.......+.+ ...|++.+.|..-
T Consensus 341 V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfsg 408 (806)
T 3cf2_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVG 408 (806)
T ss_dssp EEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCCH
T ss_pred EEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCCH
Confidence 45555665432 21111 2455788888899999999988776544333333 3467777887653
No 71
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.96 E-value=2.4e-05 Score=71.58 Aligned_cols=61 Identities=11% Similarity=0.074 Sum_probs=40.7
Q ss_pred CccccchHHHHHHHHHHhc--CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCC
Q 037625 135 RTVVGLQSQLEQVWRCLAE--ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD 198 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~--~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~ 198 (467)
..++|.+..+..+.+.+.. .....+.|+|++|+|||++|+.+++... ..-...+.++++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~---~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS---RWQGPFISLNCAAL 68 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST---TTTSCEEEEEGGGS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC---ccCCCeEEEecCCC
Confidence 4579999998888776653 2345688999999999999999998762 11123455555543
No 72
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.95 E-value=7.2e-05 Score=74.07 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=36.4
Q ss_pred CccccchHHHHHHHHHH---hcC--CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 135 RTVVGLQSQLEQVWRCL---AEE--SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L---~~~--~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++|.+..++.+..++ ..+ ..+-+.++|++|+|||+||+.+++..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 57899998887655544 333 23578999999999999999999877
No 73
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.88 E-value=4.2e-05 Score=71.40 Aligned_cols=46 Identities=15% Similarity=0.246 Sum_probs=37.9
Q ss_pred CccccchHHHHHHHHHHhc--CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 135 RTVVGLQSQLEQVWRCLAE--ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~--~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+.++|+...+.++.+.+.. .....|.|+|++|+|||++|+.+.+..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 3579999999998888764 334568899999999999999999865
No 74
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.79 E-value=1.6e-05 Score=84.18 Aligned_cols=148 Identities=18% Similarity=0.185 Sum_probs=81.8
Q ss_pred CccccchHHHHHHHHHHhcC---------CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHH
Q 037625 135 RTVVGLQSQLEQVWRCLAEE---------SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQ 205 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~---------~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 205 (467)
..++|.+..++.+...+... ....+.++|++|+|||++|+.+++.. .......+.++++...+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l---~~~~~~~i~i~~s~~~~~~~-- 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI---FGDEESMIRIDMSEYMEKHS-- 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH---HSCTTCEEEEEGGGGCSSCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh---cCCCcceEEEechhcccccc--
Confidence 45799999998888887631 12369999999999999999999886 22223345555543221000
Q ss_pred HHHHHHhcCCCCCCCCcCHHHHHHHHHHHh-cCCcEEEEeCCCCCh--hhhhhhccCCC-----C-----CCCCCceEEE
Q 037625 206 EDIGKKIGLVGDSWKSRSVEEKALDIFRSL-REKRIVLLLDDIWER--VDLTKVGVPLS-----G-----PKNTTSKVVF 272 (467)
Q Consensus 206 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--~~~~~~~~~l~-----~-----~~~~~s~iii 272 (467)
.... .+...+ .....+|+||+++.. .....+...+. . ....++.||+
T Consensus 566 ----------------~~~~----~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 625 (758)
T 3pxi_A 566 ----------------TSGG----QLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIM 625 (758)
T ss_dssp ----------------CC-------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEE
T ss_pred ----------------cccc----hhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEE
Confidence 0000 111111 123458999999742 22222211110 0 1224568888
Q ss_pred ecCChh-----h----h-----hhc-CCCcccccCCCCHHHHHHHHHHHh
Q 037625 273 TTRFIG-----V----C-----GSM-EADRKFLVACLSEKDAWELFREKV 307 (467)
Q Consensus 273 TtR~~~-----~----~-----~~~-~~~~~~~l~~L~~~e~~~lf~~~~ 307 (467)
||.... + . ... ..+..+.+.+++.++..+++...+
T Consensus 626 ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 626 TSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp EESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred eCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 887311 0 0 011 123477889999988888877654
No 75
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.68 E-value=0.00071 Score=67.16 Aligned_cols=168 Identities=20% Similarity=0.201 Sum_probs=90.9
Q ss_pred CccccchHHHHHHHHHHh---cC---------CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHH
Q 037625 135 RTVVGLQSQLEQVWRCLA---EE---------SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 202 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~---~~---------~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 202 (467)
.+++|.+..+.++.+... .. -.+-+.|+|++|+||||||+.++... .. ..+.++.+.-..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~---~~---~~i~i~g~~~~~-- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RV---PFITASGSDFVE-- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT---TC---CEEEEEGGGGTS--
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CC---CEEEEehhHHHH--
Confidence 568999887777665542 21 12348999999999999999999876 22 233443322110
Q ss_pred HHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhc----CCcEEEEeCCCCCh----------------hhhhhhccCCCC
Q 037625 203 KIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLR----EKRIVLLLDDIWER----------------VDLTKVGVPLSG 262 (467)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~----~k~~LlVlDdv~~~----------------~~~~~~~~~l~~ 262 (467)
.........+...++ ..+.++++|+++.. ..+..+...+..
T Consensus 103 -------------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 103 -------------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp -------------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred -------------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 000111122333332 24589999998521 011222222211
Q ss_pred -CCCCCceEEEecCChhhhh--hc---CCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCc
Q 037625 263 -PKNTTSKVVFTTRFIGVCG--SM---EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLP 333 (467)
Q Consensus 263 -~~~~~s~iiiTtR~~~~~~--~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 333 (467)
....+..++.||..+.... .. ..+..+.++..+.++-.+++..++.......+.. ...|+..+.|+.
T Consensus 164 ~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 164 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSST----THHHHTTSCSCC
T ss_pred cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHH----HHHHHHhcCCCC
Confidence 1123345555666554421 11 2345778888899888898887764332222221 335666677765
No 76
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.65 E-value=0.00012 Score=69.25 Aligned_cols=44 Identities=23% Similarity=0.361 Sum_probs=38.0
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++|++..++.+...+..+ ..+.++|++|+|||+||+.+++..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 45799999999988888764 368899999999999999999876
No 77
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.62 E-value=8.1e-05 Score=69.07 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=22.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+.+.++|++|+|||+||+.+++..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999987
No 78
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.61 E-value=0.00051 Score=63.07 Aligned_cols=172 Identities=19% Similarity=0.207 Sum_probs=89.6
Q ss_pred CCccccchHHHHHHHHHHh---c---------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCH
Q 037625 134 ERTVVGLQSQLEQVWRCLA---E---------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 201 (467)
Q Consensus 134 ~~~~vGr~~~~~~l~~~L~---~---------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 201 (467)
-..++|.+..++++.+... . .-.+-+.|+|++|+|||||++.++... .. ..+.++.
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~---~~---~~i~~~~------ 106 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RV---PFITASG------ 106 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT---TC---CEEEEEH------
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc---CC---CEEEecH------
Confidence 3568898877766655442 1 011238999999999999999999876 21 2233321
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh-cCCcEEEEeCCCCCh----------------hhhhhhccCCCCCC
Q 037625 202 EKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL-REKRIVLLLDDIWER----------------VDLTKVGVPLSGPK 264 (467)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------------~~~~~~~~~l~~~~ 264 (467)
.++. ... ..........+.+.. ...+.++++|+++.. .....+...+....
T Consensus 107 ~~~~----~~~--------~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~ 174 (278)
T 1iy2_A 107 SDFV----EMF--------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 174 (278)
T ss_dssp HHHH----HST--------TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC
T ss_pred HHHH----HHH--------hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC
Confidence 1111 000 000111222333332 245689999998421 01112221221111
Q ss_pred -CCCceEEEecCChhhh-----hhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCc
Q 037625 265 -NTTSKVVFTTRFIGVC-----GSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLP 333 (467)
Q Consensus 265 -~~~s~iiiTtR~~~~~-----~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 333 (467)
.....++.||..+... ........+.++..+.++-.+++...+.......+.. ...++..+.|+.
T Consensus 175 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 175 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp TTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccC----HHHHHHHcCCCC
Confidence 1223344456554432 1112445778888899988888887765433222222 335666677755
No 79
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.60 E-value=0.00029 Score=71.21 Aligned_cols=46 Identities=33% Similarity=0.419 Sum_probs=35.6
Q ss_pred CccccchHHHHHHHHHHh------cCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 135 RTVVGLQSQLEQVWRCLA------EESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~------~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++|.+...+.+...+. ......+.|+|++|+||||||+.++...
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 346888877777755443 1245689999999999999999999876
No 80
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.60 E-value=0.00037 Score=63.08 Aligned_cols=171 Identities=19% Similarity=0.225 Sum_probs=88.5
Q ss_pred CccccchHHHHHHHHHHh---c---------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHH
Q 037625 135 RTVVGLQSQLEQVWRCLA---E---------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 202 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~---~---------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 202 (467)
..++|.+..+.++.+... . .-.+-+.|+|++|+|||||++.++... .. ..+.++. .
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~---~~---~~i~~~~------~ 83 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RV---PFITASG------S 83 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT---TC---CEEEEEH------H
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CC---CEEEeeH------H
Confidence 467888877666655432 1 012238999999999999999999876 21 2233321 1
Q ss_pred HHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhc-CCcEEEEeCCCCCh------------h----hhhhhccCCCC-CC
Q 037625 203 KIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLR-EKRIVLLLDDIWER------------V----DLTKVGVPLSG-PK 264 (467)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~------------~----~~~~~~~~l~~-~~ 264 (467)
++ .... ..........+.+... ..+.++++|+++.. . ....+...+.. ..
T Consensus 84 ~~----~~~~--------~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 151 (254)
T 1ixz_A 84 DF----VEMF--------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 151 (254)
T ss_dssp HH----HHSC--------TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT
T ss_pred HH----HHHH--------hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC
Confidence 11 1000 0011122233333332 45689999998421 0 01122111101 11
Q ss_pred CCCceEEEecCChhhhh--hc---CCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCc
Q 037625 265 NTTSKVVFTTRFIGVCG--SM---EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLP 333 (467)
Q Consensus 265 ~~~s~iiiTtR~~~~~~--~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 333 (467)
.....++.||..+.... .. .....+.++..+.++-.+++...+.......+.. ...++..+.|+-
T Consensus 152 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 152 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccC----HHHHHHHcCCCC
Confidence 12234445666554421 11 2345678888888888888887764433222222 235666676654
No 81
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.60 E-value=0.00025 Score=75.12 Aligned_cols=153 Identities=16% Similarity=0.148 Sum_probs=85.0
Q ss_pred CccccchHHHHHHHHHHhc-------------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCH
Q 037625 135 RTVVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 201 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~-------------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 201 (467)
..++|.+..+++|.+++.. .....|.|+|++|+||||||+.++... ...| +.++.+
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~~---i~v~~~----- 272 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFF---FLINGP----- 272 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCEE---EEEEHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCcE---EEEEch-----
Confidence 4579999998888887752 234579999999999999999999876 2222 333321
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCHHHHHHHH-HHHhcCCcEEEEeCCCCCh--------h-----hhhhhccCCCC-CCCC
Q 037625 202 EKIQEDIGKKIGLVGDSWKSRSVEEKALDI-FRSLREKRIVLLLDDIWER--------V-----DLTKVGVPLSG-PKNT 266 (467)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~~~--------~-----~~~~~~~~l~~-~~~~ 266 (467)
++ . +. ...........+ .......+.++++|+++.. . ....+...+.. ....
T Consensus 273 -~l----~---~~-----~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~ 339 (806)
T 1ypw_A 273 -EI----M---SK-----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (806)
T ss_dssp -HH----S---SS-----STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTS
T ss_pred -Hh----h---hh-----hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccc
Confidence 11 0 00 011111222222 2223346789999998421 0 11111111100 1223
Q ss_pred CceEEEecCChhh-hhhc----CCCcccccCCCCHHHHHHHHHHHhCCCC
Q 037625 267 TSKVVFTTRFIGV-CGSM----EADRKFLVACLSEKDAWELFREKVGEET 311 (467)
Q Consensus 267 ~s~iiiTtR~~~~-~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~ 311 (467)
+..+|.||..... ...+ .....+.+...+.++-.+++...+....
T Consensus 340 ~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~ 389 (806)
T 1ypw_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK 389 (806)
T ss_dssp CCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSC
T ss_pred cEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCC
Confidence 4556666654322 1111 2234567888889999999987765443
No 82
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.58 E-value=0.0011 Score=60.64 Aligned_cols=150 Identities=15% Similarity=0.152 Sum_probs=80.9
Q ss_pred CccccchHHHHHHHHHHhc-------------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCH
Q 037625 135 RTVVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 201 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~-------------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 201 (467)
.++.|.+..+++|.+.+.. .-.+-+.|+|++|+|||||++.++... .. ..+++....-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~---~~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES---GL---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc---CC---CEEEEEcHHHHhh
Confidence 4567888887777765421 112239999999999999999999876 21 2344432221100
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh-cCCcEEEEeCCCCChh-------------hhhhhccCCCC-CCCC
Q 037625 202 EKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL-REKRIVLLLDDIWERV-------------DLTKVGVPLSG-PKNT 266 (467)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~-------------~~~~~~~~l~~-~~~~ 266 (467)
........+..+.+.. ...+.++++|+++... ....+...+.. ....
T Consensus 84 ------------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~ 145 (274)
T 2x8a_A 84 ------------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ 145 (274)
T ss_dssp ------------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTT
T ss_pred ------------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccC
Confidence 0000112222333332 3457899999986310 01111111100 1122
Q ss_pred CceEEEecCChhhhh-----hcCCCcccccCCCCHHHHHHHHHHHhC
Q 037625 267 TSKVVFTTRFIGVCG-----SMEADRKFLVACLSEKDAWELFREKVG 308 (467)
Q Consensus 267 ~s~iiiTtR~~~~~~-----~~~~~~~~~l~~L~~~e~~~lf~~~~~ 308 (467)
...++.+|..+.+.. ....+..+.++..+.++-.++|.....
T Consensus 146 ~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 146 QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp CEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 344555666554421 113456778888899999999988764
No 83
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.40 E-value=0.00042 Score=74.20 Aligned_cols=45 Identities=27% Similarity=0.396 Sum_probs=37.1
Q ss_pred ccccchHHHHHHHHHHhcC---------CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 136 TVVGLQSQLEQVWRCLAEE---------SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~---------~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.++|.+..++.+...+... ....+.|+|++|+|||++|+.+++..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4799999888888877531 12578999999999999999999876
No 84
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.39 E-value=0.00058 Score=60.10 Aligned_cols=87 Identities=16% Similarity=0.170 Sum_probs=52.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC----------CCCCCCcCH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLV----------GDSWKSRSV 224 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~----------~~~~~~~~~ 224 (467)
...++.|.|++|+|||||+..++. . .-..++|++.....+...+.. +....+.. .........
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~-----~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L-----SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQ 91 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H-----HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H-----cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHH
Confidence 346899999999999999999987 2 124678888766555555443 33322210 000011122
Q ss_pred HHHHHHHHHHhcCCcEEEEeCCCC
Q 037625 225 EEKALDIFRSLREKRIVLLLDDIW 248 (467)
Q Consensus 225 ~~~~~~l~~~l~~k~~LlVlDdv~ 248 (467)
.+....+...+..++-+||+|.+.
T Consensus 92 ~~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 92 RRVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHHHhhcCCCEEEEcCcH
Confidence 334455555554457899999974
No 85
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.38 E-value=7.1e-05 Score=65.99 Aligned_cols=114 Identities=15% Similarity=-0.041 Sum_probs=63.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRS 234 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 234 (467)
...++.|+|+.|+||||++..++++. ......++.+....... ....++..++...+........+....+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~---~~~g~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL---EYADVKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH---HHTTCCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH---HhcCCEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 35689999999999999998888876 22223444444333211 1123344444332222223344455555544
Q ss_pred hcCC-cEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEEecCChh
Q 037625 235 LREK-RIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVFTTRFIG 278 (467)
Q Consensus 235 l~~k-~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iiiTtR~~~ 278 (467)
+.+. .-+||+|++.. ....+.+.... ..+..||+|.+..+
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~L~----~~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVANILA----ENGFVVIISGLDKN 127 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHHHHH----HTTCEEEEECCSBC
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHHHHH----hCCCeEEEEecccc
Confidence 4444 45999999863 23333332211 13788999988643
No 86
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.34 E-value=0.0008 Score=71.13 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=37.5
Q ss_pred CccccchHHHHHHHHHHhcC---------CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 135 RTVVGLQSQLEQVWRCLAEE---------SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~---------~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++|.+..++.+...+... ....+.++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 45789999998888877521 23479999999999999999999876
No 87
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.33 E-value=0.00011 Score=67.99 Aligned_cols=69 Identities=22% Similarity=0.317 Sum_probs=45.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEe--CCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVV--SKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFR 233 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 233 (467)
.+++.|+|++|+|||+||.+++... ...++|++. .... .. ...+.+.....+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~------G~~VlyIs~~~eE~v-------------~~-----~~~~le~~l~~i~~ 178 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEAL------GGKDKYATVRFGEPL-------------SG-----YNTDFNVFVDDIAR 178 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHH------HTTSCCEEEEBSCSS-------------TT-----CBCCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhC------CCCEEEEEecchhhh-------------hh-----hhcCHHHHHHHHHH
Confidence 4578999999999999999998752 112455665 2221 00 01345566666666
Q ss_pred HhcCCcEEEEeCCCCC
Q 037625 234 SLREKRIVLLLDDIWE 249 (467)
Q Consensus 234 ~l~~k~~LlVlDdv~~ 249 (467)
.+...+ +||+|++..
T Consensus 179 ~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 179 AMLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHHCS-EEEEECCTT
T ss_pred HHhhCC-EEEEecccc
Confidence 666556 999999853
No 88
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.28 E-value=0.00014 Score=62.20 Aligned_cols=119 Identities=19% Similarity=0.130 Sum_probs=63.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCC---CCHHHHHHHHHHHhcCCCCCC--CCcC-------
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD---LRLEKIQEDIGKKIGLVGDSW--KSRS------- 223 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~~~~~~--~~~~------- 223 (467)
...|.|++..|.||||+|-...-+. .++--.+.++...+. .....++..+.-.+...+..+ ...+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA---~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARA---VGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHH---HHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHH
Confidence 4567788888899999998887776 344446666665443 223333333310000000111 1111
Q ss_pred HHHHHHHHHHHhcCCc-EEEEeCCCCC-----hhhhhhhccCCCCCCCCCceEEEecCChh
Q 037625 224 VEEKALDIFRSLREKR-IVLLLDDIWE-----RVDLTKVGVPLSGPKNTTSKVVFTTRFIG 278 (467)
Q Consensus 224 ~~~~~~~l~~~l~~k~-~LlVlDdv~~-----~~~~~~~~~~l~~~~~~~s~iiiTtR~~~ 278 (467)
........++.+.+.+ =|||||++.. ....+.+...+ ........||+|+|+..
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l-~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISAL-NARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHH-HTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHH-HhCcCCCEEEEECCCCc
Confidence 1223334445555444 4999999832 22233333333 34456789999999763
No 89
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.27 E-value=0.0019 Score=61.28 Aligned_cols=165 Identities=12% Similarity=-0.029 Sum_probs=98.2
Q ss_pred HHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHH
Q 037625 147 VWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEE 226 (467)
Q Consensus 147 l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 226 (467)
+.+.+...-.++..++|+.|.||++.+..+.+... ...|+....+.+....++.++...+..
T Consensus 9 l~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------- 70 (343)
T 1jr3_D 9 LRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAA--AQGFEEHHTFSIDPNTDWNAIFSLCQA---------------- 70 (343)
T ss_dssp HHHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHH--HHTCCEEEEEECCTTCCHHHHHHHHHH----------------
T ss_pred HHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHH--hCCCCeeEEEEecCCCCHHHHHHHhcC----------------
Confidence 34444434567899999999999999999888651 122322122223333334333322210
Q ss_pred HHHHHHHHhcCCcEEEEeCCCCC---hhhhhhhccCCCCCCCCCceEEEecCC-------hhhh-hhcCCCcccccCCCC
Q 037625 227 KALDIFRSLREKRIVLLLDDIWE---RVDLTKVGVPLSGPKNTTSKVVFTTRF-------IGVC-GSMEADRKFLVACLS 295 (467)
Q Consensus 227 ~~~~l~~~l~~k~~LlVlDdv~~---~~~~~~~~~~l~~~~~~~s~iiiTtR~-------~~~~-~~~~~~~~~~l~~L~ 295 (467)
.-+-+++-++|+|+++. ...++.+...+ ...++++.+|++|.. ..+. ........++..+++
T Consensus 71 ------~plf~~~kvvii~~~~~kl~~~~~~aLl~~l-e~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~ 143 (343)
T 1jr3_D 71 ------MSLFASRQTLLLLLPENGPNAAINEQLLTLT-GLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPE 143 (343)
T ss_dssp ------HHHCCSCEEEEEECCSSCCCTTHHHHHHHHH-TTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCC
T ss_pred ------cCCccCCeEEEEECCCCCCChHHHHHHHHHH-hcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCC
Confidence 11235567888899864 24455555444 233456666665532 1232 223345678899999
Q ss_pred HHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCCcHHHHHH
Q 037625 296 EKDAWELFREKVGEETLKSDHDIAELAQIVANECGGLPLALITI 339 (467)
Q Consensus 296 ~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 339 (467)
.++...++.+.+...+...+ .+.+..+++.++|.+..+...
T Consensus 144 ~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 144 QAQLPRWVAARAKQLNLELD---DAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp TTHHHHHHHHHHHHTTCEEC---HHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhchHHHHHHHH
Confidence 99999998887754332222 356778999999988876553
No 90
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.22 E-value=0.0014 Score=58.56 Aligned_cols=93 Identities=13% Similarity=0.211 Sum_probs=54.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCC---CCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC----C---CCCcCH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLES---PTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGD----S---WKSRSV 224 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~---~~~~~~ 224 (467)
...++.|+|++|+|||||+..++...... ...-..++|++.........+. .++..++.... . ....+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 34689999999999999999998853110 0123578888877655544443 34444443210 0 011222
Q ss_pred HH---HHHHHHHHhc-CCcEEEEeCCCC
Q 037625 225 EE---KALDIFRSLR-EKRIVLLLDDIW 248 (467)
Q Consensus 225 ~~---~~~~l~~~l~-~k~~LlVlDdv~ 248 (467)
.+ ....+.+.+. .+.-+||+|++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 22 2333444443 467899999974
No 91
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.21 E-value=0.00072 Score=63.97 Aligned_cols=86 Identities=17% Similarity=0.156 Sum_probs=56.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC---CCCcCHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDS---WKSRSVEEKALDI 231 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 231 (467)
...++.|+|++|+|||||+.+++.... ..-..++|++.....+.. .+..++...+. ....+.++....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~---~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ---KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 356899999999999999999988762 122357888877666543 44555543221 1234555665555
Q ss_pred HHHhc-CCcEEEEeCCCC
Q 037625 232 FRSLR-EKRIVLLLDDIW 248 (467)
Q Consensus 232 ~~~l~-~k~~LlVlDdv~ 248 (467)
...++ .+.-++|+|.+.
T Consensus 132 ~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHHTSCCSEEEEECTT
T ss_pred HHHhhhcCCCeEEehHhh
Confidence 55553 456689999974
No 92
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.19 E-value=0.00068 Score=70.91 Aligned_cols=170 Identities=16% Similarity=0.235 Sum_probs=79.7
Q ss_pred CccccchHHHHHHHHHHhc-------------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCH
Q 037625 135 RTVVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 201 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~-------------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 201 (467)
..+.|.+..+++|.+.+.- ...+-+.++|++|+|||.||+.+++.. ... ++.++ .
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~-----f~~v~----~ 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN-----FISIK----G 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TCE-----EEECC----H
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CCc-----eEEec----c
Confidence 4567888888877766531 123458899999999999999999987 222 22222 1
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh-cCCcEEEEeCCCCCh--------h--------hhhhhccCCCC-C
Q 037625 202 EKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL-REKRIVLLLDDIWER--------V--------DLTKVGVPLSG-P 263 (467)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--------~--------~~~~~~~~l~~-~ 263 (467)
.++ +... ...+ +..+..+++.- +..+++|+||+++.. . ...++...+.. .
T Consensus 545 ~~l----~s~~-------vGes-e~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 545 PEL----LTMW-------FGES-EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp HHH----HTTT-------CSSC-HHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred chh----hccc-------cchH-HHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 122 1111 1222 23344444443 457899999998531 0 01222111101 1
Q ss_pred CCCCceEEEecCChh-h----hhhcCCCcccccCCCCHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHhCCC
Q 037625 264 KNTTSKVVFTTRFIG-V----CGSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVANECGGL 332 (467)
Q Consensus 264 ~~~~s~iiiTtR~~~-~----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 332 (467)
...+.-||.||..+. + .+.-..+..+.++..+.++-.++|+.++.......+.++. .+++.+.|.
T Consensus 613 ~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~----~la~~t~g~ 682 (806)
T 3cf2_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLE----FLAKMTNGF 682 (806)
T ss_dssp SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC-----------------
T ss_pred CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHH----HHHHhCCCC
Confidence 223334444554332 2 1111345677777777777778887766544333333333 455556554
No 93
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.17 E-value=0.00038 Score=61.86 Aligned_cols=116 Identities=18% Similarity=0.168 Sum_probs=61.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCC----------------
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSW---------------- 219 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---------------- 219 (467)
..+++|.|++|+|||||++.++..... .-..++|+.... ...++...+. .++......
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~---~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLR---DGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKE 96 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHH---HTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH---CCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccC
Confidence 468999999999999999999866521 122456665433 3444443332 333211100
Q ss_pred -----CCcCHHHHHHHHHHHhc-CCc--EEEEeCCCC-----ChhhhhhhccCCCC-CCCCCceEEEecCCh
Q 037625 220 -----KSRSVEEKALDIFRSLR-EKR--IVLLLDDIW-----ERVDLTKVGVPLSG-PKNTTSKVVFTTRFI 277 (467)
Q Consensus 220 -----~~~~~~~~~~~l~~~l~-~k~--~LlVlDdv~-----~~~~~~~~~~~l~~-~~~~~s~iiiTtR~~ 277 (467)
...+..+....+...+. .++ .+||+|... +......+...+.. ....|..||++|...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 97 DQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred ceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 11144555555555442 233 499999985 22222222211100 123477888888765
No 94
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.14 E-value=0.0015 Score=61.30 Aligned_cols=93 Identities=16% Similarity=0.249 Sum_probs=57.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCC---CCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC-------CCCcCH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLES---PTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDS-------WKSRSV 224 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 224 (467)
...++.|+|++|+|||||+.+++...... .+.-..++|++....++...+.. ++..++...+. ....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCH
Confidence 34689999999999999999988765211 01135789998888776666553 34555432110 011222
Q ss_pred H---HHHHHHHHHhc--CCcEEEEeCCCC
Q 037625 225 E---EKALDIFRSLR--EKRIVLLLDDIW 248 (467)
Q Consensus 225 ~---~~~~~l~~~l~--~k~~LlVlDdv~ 248 (467)
+ +....+...++ .+.-+||+|.+.
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 2 23444555553 466799999984
No 95
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.06 E-value=0.0026 Score=60.16 Aligned_cols=93 Identities=17% Similarity=0.191 Sum_probs=56.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCC---CCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC----------CCCC
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESP---TNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGD----------SWKS 221 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------~~~~ 221 (467)
...++.|+|++|+||||||..++....... +.-..++|++....++...+.. ++..++.... ....
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 456899999999999999999887641110 1345788999888777666543 3444443210 0011
Q ss_pred cCHHHHHHHHHHHhc---CCcEEEEeCCCC
Q 037625 222 RSVEEKALDIFRSLR---EKRIVLLLDDIW 248 (467)
Q Consensus 222 ~~~~~~~~~l~~~l~---~k~~LlVlDdv~ 248 (467)
....+....+...+. .+.-+||+|.+.
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~ 229 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIM 229 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechH
Confidence 112233334444443 456788999874
No 96
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.00 E-value=0.0019 Score=59.53 Aligned_cols=86 Identities=12% Similarity=0.153 Sum_probs=55.3
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCC---CCcCHHHH-HHHHH
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSW---KSRSVEEK-ALDIF 232 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~-~~~l~ 232 (467)
.++.|+|++|+|||||+.+++....+ ...-..++|++.....+.. .++.++...+.. .+.+.++. ...+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 37899999999999999988877621 1123578899887777653 356666543211 23345554 33332
Q ss_pred HH--h-cCCcEEEEeCCCC
Q 037625 233 RS--L-REKRIVLLLDDIW 248 (467)
Q Consensus 233 ~~--l-~~k~~LlVlDdv~ 248 (467)
.. + .++.-|||+|-+.
T Consensus 103 ~l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHHTCCTTCCEEEEEECST
T ss_pred HHHHhhccCceEEEEeccc
Confidence 22 3 3567899999984
No 97
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.97 E-value=0.0018 Score=61.36 Aligned_cols=86 Identities=21% Similarity=0.214 Sum_probs=55.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC---CCCcCHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDS---WKSRSVEEKALDI 231 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 231 (467)
...++.|+|++|+|||||+.+++.... ..-..++|++.....+.. .+..++...+. ....+.++....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~---~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ---AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 456899999999999999999887662 223468888887665542 24445432211 0123455555555
Q ss_pred HHHhc-CCcEEEEeCCCC
Q 037625 232 FRSLR-EKRIVLLLDDIW 248 (467)
Q Consensus 232 ~~~l~-~k~~LlVlDdv~ 248 (467)
..... .+.-+||+|.+.
T Consensus 132 ~~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHHTTTCCSEEEEECGG
T ss_pred HHHHhcCCCCEEEEcChH
Confidence 54443 356799999974
No 98
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.80 E-value=0.0031 Score=59.97 Aligned_cols=86 Identities=19% Similarity=0.160 Sum_probs=55.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC---CCCcCHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDS---WKSRSVEEKALDI 231 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 231 (467)
...++.|+|++|+||||||.+++..... .-..++|++.....+.. .+..++...+. ....+.++....+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~---~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHH---CCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 3468999999999999999998877622 23468899887765543 23444432211 0123556666666
Q ss_pred HHHhc-CCcEEEEeCCCC
Q 037625 232 FRSLR-EKRIVLLLDDIW 248 (467)
Q Consensus 232 ~~~l~-~k~~LlVlDdv~ 248 (467)
....+ .+.-+||+|.+.
T Consensus 145 ~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHHTTTCCSEEEEECTT
T ss_pred HHHHhcCCCCEEEEeChH
Confidence 55554 345699999973
No 99
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.78 E-value=0.0031 Score=59.16 Aligned_cols=93 Identities=15% Similarity=0.229 Sum_probs=56.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCC---------CCC----CeEEEEEeCCCCCHHHHHHHHHHHhcCCCC----
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESP---------TNF----DCVIWVVVSKDLRLEKIQEDIGKKIGLVGD---- 217 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~---------~~f----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---- 217 (467)
...++.|+|++|+|||+||.+++....... ... ..++|++....++...+... +..++...+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcCCCHHHHhc
Confidence 456899999999999999999887531100 111 57889988887777766543 444543210
Q ss_pred C---CCCcCHH---HHHHHHHHHhc--CCcEEEEeCCCC
Q 037625 218 S---WKSRSVE---EKALDIFRSLR--EKRIVLLLDDIW 248 (467)
Q Consensus 218 ~---~~~~~~~---~~~~~l~~~l~--~k~~LlVlDdv~ 248 (467)
. ....+.+ +....+...+. .+.-+||+|.+.
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0 0112222 23444555554 355689999874
No 100
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.76 E-value=0.0033 Score=59.61 Aligned_cols=86 Identities=17% Similarity=0.151 Sum_probs=53.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCC---CCcCHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSW---KSRSVEEKALDI 231 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 231 (467)
...++.|+|++|+||||||.+++..... .-..++|++.....+.. .+..++...+.. ...+.++....+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~---~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHH
Confidence 4568999999999999999998877622 22468899887766533 234444322111 122344444444
Q ss_pred HHHh-cCCcEEEEeCCCC
Q 037625 232 FRSL-REKRIVLLLDDIW 248 (467)
Q Consensus 232 ~~~l-~~k~~LlVlDdv~ 248 (467)
.... ..+.-+||+|.+.
T Consensus 134 ~~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHHTCCSEEEEECGG
T ss_pred HHHHhccCCCEEEEcCHH
Confidence 4333 2455699999973
No 101
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.74 E-value=0.0017 Score=56.41 Aligned_cols=41 Identities=20% Similarity=0.460 Sum_probs=33.0
Q ss_pred chHHHHHHHHHHhc---CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 140 LQSQLEQVWRCLAE---ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 140 r~~~~~~l~~~L~~---~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
|++.++.|.+.+.. ....+|+|.|++|+||||+++.+....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 55667777777764 345689999999999999999998765
No 102
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.66 E-value=0.00092 Score=63.48 Aligned_cols=46 Identities=17% Similarity=0.288 Sum_probs=35.3
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++|.+..++.+...+.......+.|+|++|+|||+||+.+++..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 4589998876665544443333458999999999999999999876
No 103
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.65 E-value=0.017 Score=51.05 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+++|.|+.|+|||||.+.++.-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998765
No 104
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.60 E-value=0.0015 Score=61.74 Aligned_cols=51 Identities=14% Similarity=0.075 Sum_probs=32.5
Q ss_pred HHHHHhc-CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCC
Q 037625 147 VWRCLAE-ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD 198 (467)
Q Consensus 147 l~~~L~~-~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~ 198 (467)
+++.+.. .....++|+|++|+|||||++.+.+........+.++ ++-+.+.
T Consensus 164 aID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I-~~lIGER 215 (422)
T 3ice_A 164 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM-VLLIDER 215 (422)
T ss_dssp HHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEE-EEEESSC
T ss_pred eeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEE-EEEecCC
Confidence 3444432 3456899999999999999999887652212233333 4555543
No 105
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.56 E-value=0.0021 Score=63.82 Aligned_cols=44 Identities=11% Similarity=0.153 Sum_probs=38.1
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++|++..++.+...+..+ ..+.|+|++|+|||+||+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 45799999998888887655 378999999999999999999876
No 106
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.54 E-value=0.0014 Score=62.23 Aligned_cols=114 Identities=14% Similarity=0.135 Sum_probs=62.5
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH
Q 037625 154 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFR 233 (467)
Q Consensus 154 ~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 233 (467)
....+++|.|+.|+|||||.+.+....... .-..++.+.-.-....... ..+..+.. ...........+..
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~e~~~~~~-~~~v~q~~------~~~~~~~~~~~La~ 191 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPIEFVHESK-KCLVNQRE------VHRDTLGFSEALRS 191 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCS-SSEEEEEE------BTTTBSCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcHHhhhhcc-ccceeeee------eccccCCHHHHHHH
Confidence 345699999999999999999987765111 0112222221111100000 00000000 00111223346778
Q ss_pred HhcCCcEEEEeCCCCChhhhhhhccCCCCCCCCCceEEEecCChhhh
Q 037625 234 SLREKRIVLLLDDIWERVDLTKVGVPLSGPKNTTSKVVFTTRFIGVC 280 (467)
Q Consensus 234 ~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iiiTtR~~~~~ 280 (467)
.|..++=+|++|+..+...+..+.... ..|..+++||...+..
T Consensus 192 aL~~~PdvillDEp~d~e~~~~~~~~~----~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 192 ALREDPDIILVGEMRDLETIRLALTAA----ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp HTTSCCSEEEESCCCSHHHHHHHHHHH----HTTCEEEEEESCSSHH
T ss_pred HhhhCcCEEecCCCCCHHHHHHHHHHH----hcCCEEEEEEccChHH
Confidence 888889999999998766655443322 2355688888876654
No 107
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.52 E-value=0.00043 Score=73.28 Aligned_cols=151 Identities=18% Similarity=0.250 Sum_probs=80.3
Q ss_pred CccccchHHHHHHHHHHhc-------------CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCH
Q 037625 135 RTVVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 201 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~-------------~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 201 (467)
..++|.+..++.|.+.+.- ...+.+.++|++|+||||||+.+++.. ...|- .++.+.-.
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i---~v~~~~l~-- 548 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANFI---SIKGPELL-- 548 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH---TCCCC---CCCCSSST--
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh---CCCEE---EEechHhh--
Confidence 4567888888888776642 123568899999999999999999987 22221 11111100
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh-cCCcEEEEeCCCCCh----------------hhhhhhccCCCC-C
Q 037625 202 EKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL-REKRIVLLLDDIWER----------------VDLTKVGVPLSG-P 263 (467)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------------~~~~~~~~~l~~-~ 263 (467)
..+.... ......+.+.. ...+.+|+||+++.. .....+...+.. .
T Consensus 549 ---------------~~~~g~~-~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~ 612 (806)
T 1ypw_A 549 ---------------TMWFGES-EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp ---------------TCCTTTS-SHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC---
T ss_pred ---------------hhhcCcc-HHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc
Confidence 0001111 12222233322 234679999998531 112333333311 1
Q ss_pred CCCCceEEEecCChhh-hhh-c---CCCcccccCCCCHHHHHHHHHHHhCC
Q 037625 264 KNTTSKVVFTTRFIGV-CGS-M---EADRKFLVACLSEKDAWELFREKVGE 309 (467)
Q Consensus 264 ~~~~s~iiiTtR~~~~-~~~-~---~~~~~~~l~~L~~~e~~~lf~~~~~~ 309 (467)
...+..||.||..... -.. . .....+.+...+.++-.+++..++..
T Consensus 613 ~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~ 663 (806)
T 1ypw_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663 (806)
T ss_dssp ---CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSC
T ss_pred ccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhcc
Confidence 2234455556653322 111 1 23346778888888888988887644
No 108
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.51 E-value=0.009 Score=52.67 Aligned_cols=47 Identities=23% Similarity=0.316 Sum_probs=32.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCC---CCCCCeEEEEEeCCCCCH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLES---PTNFDCVIWVVVSKDLRL 201 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~~~~~~~ 201 (467)
...+++|+|++|+|||||++.++...... ......++|+........
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 34689999999999999999998744110 112345778776554333
No 109
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.50 E-value=0.0014 Score=55.44 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=22.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+|.|+|++|+||||+++.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999986
No 110
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.48 E-value=0.0076 Score=56.22 Aligned_cols=52 Identities=10% Similarity=0.075 Sum_probs=37.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKK 211 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 211 (467)
...++.|.|.+|+|||||+.+++.+... .+ ..++|++.. .+..++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSD-ND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHT-TT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 3468999999999999999999877622 22 577787765 4556666666544
No 111
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.47 E-value=0.014 Score=56.18 Aligned_cols=93 Identities=13% Similarity=0.190 Sum_probs=53.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccC---CCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC-------CCCcCH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLE---SPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDS-------WKSRSV 224 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 224 (467)
...++.|+|++|+|||||+..++-.... .......++|++.........+ ..++..++..... ....+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCCh
Confidence 3568999999999999999987643311 0113456888887766555544 3355555532110 011122
Q ss_pred H---HHHHHHHHHh-cCCcEEEEeCCCC
Q 037625 225 E---EKALDIFRSL-REKRIVLLLDDIW 248 (467)
Q Consensus 225 ~---~~~~~l~~~l-~~k~~LlVlDdv~ 248 (467)
. +....+...+ ..+.-+||+|.+.
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 2 2223333333 2467789999873
No 112
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.44 E-value=0.0027 Score=60.63 Aligned_cols=45 Identities=22% Similarity=0.201 Sum_probs=36.9
Q ss_pred ccccchHHHHHHHHHHh-------------c--CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 136 TVVGLQSQLEQVWRCLA-------------E--ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 136 ~~vGr~~~~~~l~~~L~-------------~--~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.++|.+..++.+...+. . ...+.+.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 46899999998888773 1 134578999999999999999999886
No 113
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.42 E-value=0.0016 Score=54.78 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=22.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+|+|.|++|+||||+++.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999876
No 114
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.42 E-value=0.0025 Score=55.55 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=29.0
Q ss_pred HHHHHHHHHhc--CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 143 QLEQVWRCLAE--ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 143 ~~~~l~~~L~~--~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
-+++|.+.+.. ....+++|.|++|+|||||++.+....
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34455555543 345699999999999999999998876
No 115
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.34 E-value=0.0018 Score=54.42 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+|+|.|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47999999999999999999 544
No 116
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.33 E-value=0.0037 Score=59.98 Aligned_cols=46 Identities=22% Similarity=0.229 Sum_probs=36.4
Q ss_pred CccccchHHHHHHHHHHhc------------------------------CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 135 RTVVGLQSQLEQVWRCLAE------------------------------ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~------------------------------~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++|.+..++.|...+.. .....+.++|++|+|||++|+.+++..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3578998888888776620 123468999999999999999999876
No 117
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.30 E-value=0.0022 Score=55.56 Aligned_cols=26 Identities=38% Similarity=0.323 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+|+|+|++|+||||+++.++...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999999876
No 118
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.30 E-value=0.0016 Score=55.63 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
|.|+|+||+|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 568999999999999999998775
No 119
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.27 E-value=0.002 Score=54.22 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=22.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+|+|+|++|+||||+++.++...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999876
No 120
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.27 E-value=0.0099 Score=56.30 Aligned_cols=94 Identities=21% Similarity=0.313 Sum_probs=53.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCC--CCC-CCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC----------CCCC
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLES--PTN-FDCVIWVVVSKDLRLEKIQEDIGKKIGLVGD----------SWKS 221 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~--~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------~~~~ 221 (467)
...++.|+|++|+|||||+..++...... .+. -..++|++....+....+ ..+....+.... ....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 45689999999999999999998765111 111 134588887665433333 233333322110 0011
Q ss_pred cCHHHHHHHHHHHhc------CCcEEEEeCCCCC
Q 037625 222 RSVEEKALDIFRSLR------EKRIVLLLDDIWE 249 (467)
Q Consensus 222 ~~~~~~~~~l~~~l~------~k~~LlVlDdv~~ 249 (467)
....+....+...+. .++-+||+|.+-.
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 112233444444443 4678999999853
No 121
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.26 E-value=0.013 Score=53.94 Aligned_cols=87 Identities=14% Similarity=0.123 Sum_probs=47.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK-DLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFR 233 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 233 (467)
...+++|+|++|+||||++..++....... -..+..+.... .....+.+.......+.+.. ...+...+...+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~--G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~~~~~~l~~al~- 178 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEK--HKKIAFITTDTYRIAAVEQLKTYAELLQAPLE--VCYTKEEFQQAKE- 178 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCCEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BCSSHHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc--CCEEEEEecCcccchHHHHHHHHHHhcCCCeE--ecCCHHHHHHHHH-
Confidence 356999999999999999999987762111 22455554432 22333334444444443221 1123333333332
Q ss_pred HhcCCcEEEEeCCC
Q 037625 234 SLREKRIVLLLDDI 247 (467)
Q Consensus 234 ~l~~k~~LlVlDdv 247 (467)
.+ .+.=++|+|-.
T Consensus 179 ~~-~~~dlvIiDT~ 191 (296)
T 2px0_A 179 LF-SEYDHVFVDTA 191 (296)
T ss_dssp HG-GGSSEEEEECC
T ss_pred Hh-cCCCEEEEeCC
Confidence 33 34557888854
No 122
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.25 E-value=0.0027 Score=54.41 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=22.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+++|.|++|+|||||++.++...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcc
Confidence 4689999999999999999998764
No 123
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.25 E-value=0.0027 Score=53.98 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=22.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.++++|+|++|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998765
No 124
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.24 E-value=0.0045 Score=54.57 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 141 QSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 141 ~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+...+.+...+.....+.|+|+|.+|+|||||+..+....
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3445555666655677889999999999999999998875
No 125
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.21 E-value=0.013 Score=57.17 Aligned_cols=53 Identities=23% Similarity=0.402 Sum_probs=35.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCC-CHHHHHHHHHH
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKIQEDIGK 210 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~ 210 (467)
...++|+|++|+|||||+..+..+.. ....+..+++-+.+.. ...+++.++..
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~--~~~~~i~V~~~iGerttev~el~~~l~~ 204 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIA--QEHGGISVFAGVGERTREGNDLYHEMKD 204 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHH--HHTCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhh--hccCcEEEEeeeccCchHHHHHHHHhhh
Confidence 34689999999999999999987751 1122344566665543 45556555543
No 126
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.21 E-value=0.0026 Score=53.84 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=20.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHh
Q 037625 157 GIIGLYGMGGVGKTTLLTHINN 178 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~ 178 (467)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 127
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.21 E-value=0.0024 Score=54.42 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=22.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+.|.|+|++|+||||+++.++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999876
No 128
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.19 E-value=0.003 Score=54.67 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=24.3
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 154 ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 154 ~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
....+|+|.|++|+||||+++.+....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999999877
No 129
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.19 E-value=0.01 Score=51.48 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=21.4
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+|.|.|++|+||||.|+.+++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999887
No 130
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.14 E-value=0.031 Score=54.36 Aligned_cols=63 Identities=25% Similarity=0.357 Sum_probs=44.2
Q ss_pred HHHHHhc-CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCC-CCHHHHHHHHHHH
Q 037625 147 VWRCLAE-ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-LRLEKIQEDIGKK 211 (467)
Q Consensus 147 l~~~L~~-~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~ 211 (467)
.++.+.. .+-..++|.|.+|+|||+|+..+.++.. +.+.+.++++-+... ....++.+++...
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 4455542 3445789999999999999999998762 234466677766654 3567777777654
No 131
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.11 E-value=0.0028 Score=54.13 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+|.|.|++|+||||+++.++...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999877
No 132
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.10 E-value=0.0028 Score=54.27 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=22.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+|.|.|++|+||||+++.+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999987
No 133
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.10 E-value=0.014 Score=66.74 Aligned_cols=86 Identities=17% Similarity=0.149 Sum_probs=57.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCC---CCcCHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSW---KSRSVEEKALDI 231 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 231 (467)
..+.+.|+|++|+|||+||.++.... ...-..++|++.....+... +..++...+.. ...+.++....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea---~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH---HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 45789999999999999999998876 23344678887777665554 44444322111 123344555555
Q ss_pred HHHh-cCCcEEEEeCCCC
Q 037625 232 FRSL-REKRIVLLLDDIW 248 (467)
Q Consensus 232 ~~~l-~~k~~LlVlDdv~ 248 (467)
.... ..+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 5554 3567899999984
No 134
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.10 E-value=0.0035 Score=54.27 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|+|||||++.++...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999999999999999998865
No 135
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.10 E-value=0.0037 Score=54.47 Aligned_cols=26 Identities=31% Similarity=0.303 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|+|+.|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998876
No 136
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.09 E-value=0.0026 Score=55.10 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+|+|.|++|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998876
No 137
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.08 E-value=0.0046 Score=60.09 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=36.9
Q ss_pred CccccchHHHHHHHHHHhc--------------CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 135 RTVVGLQSQLEQVWRCLAE--------------ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~--------------~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++|.+..++.|...+.. ...+-+.++|++|+||||+|+.++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4578998888888766632 124568999999999999999999987
No 138
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.08 E-value=0.0029 Score=53.70 Aligned_cols=25 Identities=44% Similarity=0.391 Sum_probs=22.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+.|.|+|++|+||||+++.+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999876
No 139
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.05 E-value=0.0031 Score=53.89 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=22.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+|.|.|++|+||||+++.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999876
No 140
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.05 E-value=0.0051 Score=53.96 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=33.0
Q ss_pred cchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 139 GLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 139 Gr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+.....+.+...+.....+.|+|+|.+|+|||||+..+....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 344555666666655677899999999999999999998875
No 141
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.04 E-value=0.0035 Score=53.73 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+|.|.|++|+||||+++.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
No 142
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.04 E-value=0.0033 Score=54.63 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++|+|+|++|+|||||++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999998876
No 143
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.02 E-value=0.004 Score=53.98 Aligned_cols=25 Identities=24% Similarity=0.398 Sum_probs=22.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+++|.|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4589999999999999999998764
No 144
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.01 E-value=0.0038 Score=52.96 Aligned_cols=23 Identities=43% Similarity=0.580 Sum_probs=20.9
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 145
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.01 E-value=0.0059 Score=52.43 Aligned_cols=37 Identities=14% Similarity=0.101 Sum_probs=28.1
Q ss_pred HHHHHHHHhc-CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 144 LEQVWRCLAE-ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 144 ~~~l~~~L~~-~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+..+..++.. +....+.|+|++|+||||+|..+++.+
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4555555543 223479999999999999999998876
No 146
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.00 E-value=0.0067 Score=56.39 Aligned_cols=40 Identities=20% Similarity=0.349 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHhcC---CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 141 QSQLEQVWRCLAEE---SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 141 ~~~~~~l~~~L~~~---~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...++.+.+++... ....+.|+|++|+|||+||..+++..
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 33444555666542 24688999999999999999999987
No 147
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.00 E-value=0.0071 Score=56.75 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=32.0
Q ss_pred ccchHHHHHHHHHHh----cCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 138 VGLQSQLEQVWRCLA----EESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 138 vGr~~~~~~l~~~L~----~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
++.+.-.+.+.+.+. .+....|.|+|++|+||||+++.++...
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 344555566666654 3456679999999999999999988865
No 148
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.96 E-value=0.0035 Score=56.55 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=22.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
++|.|.|++|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999999876
No 149
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.96 E-value=0.0032 Score=53.16 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+.|.|.|++|+||||+|+.++...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999876
No 150
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.95 E-value=0.0045 Score=52.15 Aligned_cols=25 Identities=24% Similarity=0.503 Sum_probs=22.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+++|+|++|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 151
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.95 E-value=0.02 Score=53.58 Aligned_cols=27 Identities=33% Similarity=0.507 Sum_probs=23.8
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 154 ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 154 ~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
....+++|+|+.|+||||+++.++...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346799999999999999999998876
No 152
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.95 E-value=0.0072 Score=55.55 Aligned_cols=26 Identities=35% Similarity=0.308 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+|.|.|++|+||||+++.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998865
No 153
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.94 E-value=0.015 Score=53.80 Aligned_cols=90 Identities=17% Similarity=0.194 Sum_probs=48.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCH--HHHHHHHHHHhcCCCC-CCCCcCHHHH-HHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL--EKIQEDIGKKIGLVGD-SWKSRSVEEK-ALD 230 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~-~~~~~~~~~~-~~~ 230 (467)
...+++|+|++|+||||++..++.... ..-..+.++... .+.. .+-+...+...+...- .....+.... ...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~---~~g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV---DEGKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH---hcCCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 346899999999999999999988772 122234455433 2222 1223344444443210 0011222222 233
Q ss_pred HHHHhcCCcEEEEeCCCC
Q 037625 231 IFRSLREKRIVLLLDDIW 248 (467)
Q Consensus 231 l~~~l~~k~~LlVlDdv~ 248 (467)
+...+..+.-++|+|..-
T Consensus 179 l~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 179 VAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHTTCSEEEEEECC
T ss_pred HHHHHhcCCCEEEEECCC
Confidence 444455555688889763
No 154
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.94 E-value=0.0036 Score=53.50 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
++++|.|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998765
No 155
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.92 E-value=0.008 Score=55.25 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+|+|.|+.|+|||||++.+...+
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999988776
No 156
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.91 E-value=0.0043 Score=53.29 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+..+|+|.|++|+||||+++.+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999876
No 157
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.91 E-value=0.0047 Score=52.67 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=22.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
...|+|+|++|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999887
No 158
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.90 E-value=0.004 Score=53.85 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=21.7
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.|+|.|+.|+||||+++.+.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999987
No 159
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.89 E-value=0.011 Score=51.49 Aligned_cols=25 Identities=24% Similarity=0.435 Sum_probs=22.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+|+|.|++|+||||+++.+.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999987
No 160
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.89 E-value=0.0034 Score=53.45 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
++|+|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999876
No 161
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.89 E-value=0.005 Score=53.37 Aligned_cols=25 Identities=36% Similarity=0.352 Sum_probs=22.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+++|+|++|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999998765
No 162
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.86 E-value=0.0043 Score=52.22 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHH
Q 037625 156 AGIIGLYGMGGVGKTTLLTHIN 177 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~ 177 (467)
..+++|+|++|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999643
No 163
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.85 E-value=0.0053 Score=52.75 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++++|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998765
No 164
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.84 E-value=0.0046 Score=53.02 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+|+|.|++|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998876
No 165
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.83 E-value=0.0049 Score=52.72 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHhc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
.+++|.|++|+|||||++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999864
No 166
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.83 E-value=0.0055 Score=53.06 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+|+|.|++|+||||+++.+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999999875
No 167
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.81 E-value=0.0054 Score=53.46 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|+|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998865
No 168
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.80 E-value=0.0048 Score=51.59 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+|+|.|++|+||||+++.+...+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 169
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.79 E-value=0.0042 Score=52.19 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=22.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
++|.|.|++|+||||+++.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 170
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.77 E-value=0.0051 Score=52.97 Aligned_cols=25 Identities=32% Similarity=0.398 Sum_probs=22.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+|+|.|++|+||||+++.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999876
No 171
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.77 E-value=0.0053 Score=53.75 Aligned_cols=26 Identities=35% Similarity=0.415 Sum_probs=23.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+.++|.|.|++|+||||.|+.+++.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999887
No 172
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.77 E-value=0.0053 Score=53.21 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHh
Q 037625 157 GIIGLYGMGGVGKTTLLTHINN 178 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~ 178 (467)
.+|+|.|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 173
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.77 E-value=0.0046 Score=53.42 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=21.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+.++|+|+.|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999999998754
No 174
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.76 E-value=0.0037 Score=53.05 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=18.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+|.|.|++|+||||+|+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999998876
No 175
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.76 E-value=0.005 Score=52.40 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..|+|.|++|+||||+++.+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998865
No 176
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.75 E-value=0.0063 Score=52.54 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
+..+|+|.|+.|+||||+++.+...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4568999999999999999999874
No 177
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.74 E-value=0.023 Score=53.21 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=36.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKK 211 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 211 (467)
...++.|.|.+|+||||||..++..... .-..++|++.. .+..++...++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlE--ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLE--MSAEQLALRALSD 96 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCC--CCHHHHHHHHHHH
Confidence 3458999999999999999999887622 33467776653 4455666665443
No 178
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.72 E-value=0.0059 Score=53.87 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=22.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+|+|+|++|+||||+++.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998765
No 179
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.71 E-value=0.0017 Score=61.26 Aligned_cols=35 Identities=23% Similarity=0.180 Sum_probs=27.3
Q ss_pred HHHHHHhc-CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 146 QVWRCLAE-ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 146 ~l~~~L~~-~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
++++.+.. .....++|.|++|+|||+|+..+.+..
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 44555543 344578999999999999999998876
No 180
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.71 E-value=0.046 Score=53.05 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+..+|.++|++|+||||++..++..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998876
No 181
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.70 E-value=0.0069 Score=52.62 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=22.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+|+|+|++|+||||+++.+....
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998764
No 182
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.67 E-value=0.006 Score=54.71 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+++|.|++|+|||||++.+++..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999765
No 183
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.66 E-value=0.0059 Score=50.97 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=21.4
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.|+|.|++|+||||+++.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 184
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.66 E-value=0.011 Score=52.73 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
....|+|.|++|+||||+|+.+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998865
No 185
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.65 E-value=0.0061 Score=52.89 Aligned_cols=22 Identities=41% Similarity=0.527 Sum_probs=20.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHh
Q 037625 157 GIIGLYGMGGVGKTTLLTHINN 178 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~ 178 (467)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999976
No 186
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.63 E-value=0.037 Score=54.07 Aligned_cols=63 Identities=25% Similarity=0.360 Sum_probs=44.8
Q ss_pred HHHHHhc-CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCC-CHHHHHHHHHHH
Q 037625 147 VWRCLAE-ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKIQEDIGKK 211 (467)
Q Consensus 147 l~~~L~~-~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 211 (467)
.++.|.. .+-..++|.|.+|+|||+|+..+.++.. +.+.+.++++-+.... ...++..++...
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTT--TTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHH--hhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 3444442 3445789999999999999999998762 3345677777776554 577777777654
No 187
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.63 E-value=0.0093 Score=53.71 Aligned_cols=26 Identities=35% Similarity=0.365 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+|.|.|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999999876
No 188
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.63 E-value=0.017 Score=54.19 Aligned_cols=105 Identities=14% Similarity=0.055 Sum_probs=56.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSLR 236 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 236 (467)
..++|+|+.|+|||||++.+.... . .-...+.+.-......... ...++... . ........+...|.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~-~---~~~g~i~i~~~~e~~~~~~----~~~i~~~~----g-gg~~~r~~la~aL~ 238 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI-P---KEERIISIEDTEEIVFKHH----KNYTQLFF----G-GNITSADCLKSCLR 238 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS-C---TTSCEEEEESSCCCCCSSC----SSEEEEEC----B-TTBCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-c---CCCcEEEECCeeccccccc----hhEEEEEe----C-CChhHHHHHHHHhh
Confidence 489999999999999999998876 1 2234555443221110000 00000000 0 11233345566677
Q ss_pred CCcEEEEeCCCCChhhhhhhccCCCCCCCCCceEEEecCChh
Q 037625 237 EKRIVLLLDDIWERVDLTKVGVPLSGPKNTTSKVVFTTRFIG 278 (467)
Q Consensus 237 ~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iiiTtR~~~ 278 (467)
.++-+|++|+..+...++.+. .+ ...+.-+|+||....
T Consensus 239 ~~p~ilildE~~~~e~~~~l~-~~---~~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 239 MRPDRIILGELRSSEAYDFYN-VL---CSGHKGTLTTLHAGS 276 (330)
T ss_dssp SCCSEEEECCCCSTHHHHHHH-HH---HTTCCCEEEEEECSS
T ss_pred hCCCEEEEcCCChHHHHHHHH-HH---hcCCCEEEEEEcccH
Confidence 788899999997654444332 22 112333666766543
No 189
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.63 E-value=0.012 Score=50.51 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=21.4
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.|+|.|+.|+||||+++.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 190
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.63 E-value=0.006 Score=52.22 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=21.3
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999865
No 191
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.63 E-value=0.0065 Score=52.53 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=22.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...|+|.|++|+||||+|+.+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999876
No 192
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.63 E-value=0.0059 Score=52.18 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=22.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+|+|.|++|+||||+++.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998876
No 193
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.63 E-value=0.0065 Score=52.88 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=22.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+|+|.|+.|+||||+++.+.+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 194
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.61 E-value=0.007 Score=54.79 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+|.|.|++|+||||+|+.+...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999874
No 195
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.60 E-value=0.0068 Score=53.56 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...|+|.|++|+||||+++.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999876
No 196
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.58 E-value=0.012 Score=54.76 Aligned_cols=43 Identities=26% Similarity=0.254 Sum_probs=30.0
Q ss_pred ccchHHHHHHHHHHhcC----CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 138 VGLQSQLEQVWRCLAEE----SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 138 vGr~~~~~~l~~~L~~~----~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+|-...+..+...+... ...+|+|.|+.|+|||||++.+....
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44444444444444322 34589999999999999999988776
No 197
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.58 E-value=0.021 Score=58.51 Aligned_cols=44 Identities=20% Similarity=0.294 Sum_probs=38.3
Q ss_pred CccccchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 135 RTVVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 135 ~~~vGr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++|.+..++.+...+..+ ..+.|+|++|+||||||+.++...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 46899998888888887665 478999999999999999999876
No 198
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.56 E-value=0.033 Score=53.92 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++.|+|++|+||||++..++...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998877
No 199
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.56 E-value=0.0071 Score=52.75 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+|+|.|+.|+||||+++.+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 200
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.56 E-value=0.0082 Score=51.90 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...|+|.|+.|+||||+++.+.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999875
No 201
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.53 E-value=0.0079 Score=52.29 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|+|||||++.+....
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998765
No 202
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.48 E-value=0.0078 Score=52.86 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=22.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...|+|.|++|+||||+++.++...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999876
No 203
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.48 E-value=0.0082 Score=54.01 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+|+|.|++|+||||+|+.+...+
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998865
No 204
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.48 E-value=0.0081 Score=50.18 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++++|.|+.|+|||||+..+...+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999998876
No 205
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.47 E-value=0.064 Score=52.66 Aligned_cols=26 Identities=35% Similarity=0.594 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|+|++|+|||||++.++...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 34689999999999999999998876
No 206
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.46 E-value=0.0072 Score=52.85 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=20.9
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 207
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.46 E-value=0.0079 Score=52.62 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.9
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998875
No 208
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.46 E-value=0.052 Score=52.62 Aligned_cols=25 Identities=36% Similarity=0.401 Sum_probs=22.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+|.++|++|+||||++..++..+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999998776
No 209
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.46 E-value=0.0076 Score=52.92 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=22.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4589999999999999999998764
No 210
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.45 E-value=0.009 Score=52.45 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|+|+.|+|||||.+.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34689999999999999999998865
No 211
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.45 E-value=0.0085 Score=49.61 Aligned_cols=27 Identities=37% Similarity=0.343 Sum_probs=23.5
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 154 ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 154 ~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
....+++|.|+.|+|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345689999999999999999998865
No 212
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.45 E-value=0.0087 Score=53.87 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+|+|.|+.|+||||+++.++..+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999999776
No 213
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.45 E-value=0.047 Score=50.28 Aligned_cols=89 Identities=20% Similarity=0.119 Sum_probs=49.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHhcCCCC-CCCCcCHHHHHHHHHH
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-LRLEKIQEDIGKKIGLVGD-SWKSRSVEEKALDIFR 233 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~~l~~ 233 (467)
..+++++|++|+||||++..++.... ..-..+.++..... ....+.+.......+...- .....+.........+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~---~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK---KKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH---HTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999999988762 22234555554322 2223334444444443210 0112344444444444
Q ss_pred Hhc-CCcEEEEeCCC
Q 037625 234 SLR-EKRIVLLLDDI 247 (467)
Q Consensus 234 ~l~-~k~~LlVlDdv 247 (467)
.++ ++-=++|+|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 554 33337888875
No 214
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.44 E-value=0.0093 Score=53.41 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+|+|.|+.|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999988754
No 215
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.42 E-value=0.0084 Score=51.44 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+|+|+|+.|+||||+++.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999998864
No 216
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.41 E-value=0.0078 Score=52.94 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=22.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...|.|.|++|+||||+++.+++..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999887
No 217
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.36 E-value=0.0048 Score=53.83 Aligned_cols=23 Identities=35% Similarity=0.746 Sum_probs=21.3
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+|+|.|+.|+||||+++.+...+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998876
No 218
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.34 E-value=0.0099 Score=55.28 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|+|||||++.+..-.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 45689999999999999999998866
No 219
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.27 E-value=0.068 Score=52.35 Aligned_cols=53 Identities=9% Similarity=-0.036 Sum_probs=37.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKK 211 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 211 (467)
...++.|.|.+|+||||||..++..... ..-..++|++.. .+..++...++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~--~~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAAL--KEGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--hCCCeEEEEECC--CCHHHHHHHHHHH
Confidence 3458999999999999999999887621 122357776664 4456777766543
No 220
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.26 E-value=0.058 Score=52.47 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++|.++|.+|+||||++..++..+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999998877
No 221
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.23 E-value=0.012 Score=49.73 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+|+|.|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998865
No 222
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.21 E-value=0.025 Score=52.69 Aligned_cols=26 Identities=38% Similarity=0.584 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|+|++|+||||++..++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998877
No 223
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.17 E-value=0.018 Score=50.07 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=23.8
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 154 ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 154 ~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
....+|.|.|+.|+||||+++.+...+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999998876
No 224
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.16 E-value=0.012 Score=54.35 Aligned_cols=26 Identities=27% Similarity=0.574 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|+|++|+|||||++.++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35699999999999999999998776
No 225
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.12 E-value=0.013 Score=53.87 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=22.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.++|+|.||.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3589999999999999999999876
No 226
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.11 E-value=0.011 Score=51.19 Aligned_cols=24 Identities=21% Similarity=0.481 Sum_probs=22.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
++|+|.|+.|+||||+++.+...+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 389999999999999999998876
No 227
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.11 E-value=0.01 Score=51.98 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=22.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..|+|.|++|+||||+++.++...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999876
No 228
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.10 E-value=0.011 Score=50.59 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=21.0
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+++|+|+.|+|||||++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999988765
No 229
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.09 E-value=0.0085 Score=53.10 Aligned_cols=25 Identities=28% Similarity=0.309 Sum_probs=16.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHH-hcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHIN-NKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~-~~~ 180 (467)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 543
No 230
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.08 E-value=0.013 Score=52.41 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=21.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHh
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINN 178 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~ 178 (467)
...+++|.|++|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 346899999999999999999883
No 231
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.07 E-value=0.014 Score=54.49 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=22.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.++|+|.|+.|+|||||+..++..+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4589999999999999999999876
No 232
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.07 E-value=0.056 Score=61.86 Aligned_cols=86 Identities=17% Similarity=0.149 Sum_probs=57.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCC---CCcCHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSW---KSRSVEEKALDI 231 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 231 (467)
...++.|+|++|+||||||.+++.... ..-..++|++.....+.. .+..++...+.. ...+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a---~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 456899999999999999999988773 223467888877766543 145555432211 234556666655
Q ss_pred HHHh-cCCcEEEEeCCCC
Q 037625 232 FRSL-REKRIVLLLDDIW 248 (467)
Q Consensus 232 ~~~l-~~k~~LlVlDdv~ 248 (467)
.... +.+.-+||+|.+.
T Consensus 454 ~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHHhcCCcEEEECCHH
Confidence 5444 3456799999984
No 233
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.06 E-value=0.019 Score=49.93 Aligned_cols=23 Identities=30% Similarity=0.225 Sum_probs=20.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHhc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
.+++|.|+.|+|||||++.++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998764
No 234
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.05 E-value=0.014 Score=51.11 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHh
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINN 178 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~ 178 (467)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 235
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.04 E-value=0.096 Score=53.26 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
....++|+|+.|+|||||++.+..-.
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998754
No 236
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.04 E-value=0.021 Score=53.08 Aligned_cols=41 Identities=24% Similarity=0.416 Sum_probs=30.7
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCC
Q 037625 154 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK 197 (467)
Q Consensus 154 ~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 197 (467)
++.++|+|+|-|||||||.+..++--+. ..-..+.-+++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA---~~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFS---ILGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHH---HCCCeEEEEecCC
Confidence 4678999999999999999998887772 2233466666653
No 237
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.04 E-value=0.013 Score=51.87 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=22.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+|+|.|++|+||||+++.+...+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999876
No 238
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.02 E-value=0.013 Score=54.87 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=22.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+|+|.|+.|+||||||..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 489999999999999999999876
No 239
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.01 E-value=0.043 Score=50.50 Aligned_cols=88 Identities=20% Similarity=0.184 Sum_probs=46.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHH--HHHHHHHHHhcCCCCC-CCCcCHHHHHHHHH
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE--KIQEDIGKKIGLVGDS-WKSRSVEEKALDIF 232 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~ 232 (467)
..+++|+|++|+||||++..++.... ..-..+.++... ..... ..+..+....+...-. ....+..++.....
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~---~~~~~v~l~~~d-~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPLLVAAD-TQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH---HTTCCEEEEECC-SSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEecCC-cccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 46899999999999999999988762 122234454433 22222 1223344444432110 01223444433333
Q ss_pred HHh-cCCcEEEEeCCC
Q 037625 233 RSL-REKRIVLLLDDI 247 (467)
Q Consensus 233 ~~l-~~k~~LlVlDdv 247 (467)
..+ ..+.=++|+|.-
T Consensus 174 ~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 174 EKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHTCCEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 333 244557888976
No 240
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.01 E-value=0.013 Score=51.98 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|+|+.|+|||||.+.++.-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34689999999999999999988754
No 241
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.00 E-value=0.056 Score=52.85 Aligned_cols=51 Identities=10% Similarity=0.020 Sum_probs=35.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGK 210 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 210 (467)
...++.|.|.+|+||||||.+++.+... . -..++|++... +..++...+..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~-~--g~~vl~fSlEm--s~~ql~~R~~~ 246 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSD-N--DDVVNLHSLEM--GKKENIKRLIV 246 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHH-T--TCEEEEECSSS--CTTHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHH-c--CCEEEEEECCC--CHHHHHHHHHH
Confidence 3458999999999999999999887722 2 34577765543 34455555443
No 242
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.00 E-value=0.014 Score=51.96 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=22.9
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 154 ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 154 ~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.. .+++|.|+.|+|||||.+.++.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 35 789999999999999999998754
No 243
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.00 E-value=0.025 Score=49.98 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
....|+|.|++|+||||+++.+.+.+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999988
No 244
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.99 E-value=0.014 Score=50.45 Aligned_cols=42 Identities=26% Similarity=0.215 Sum_probs=21.7
Q ss_pred cchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 139 GLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 139 Gr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
++....+.+.+.....+.-.|+|+|.+|+|||||...+.+..
T Consensus 13 ~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -----------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 344444455454444455578999999999999999888654
No 245
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.99 E-value=0.013 Score=54.37 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=22.3
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
++|+|+|+.|+|||||+..++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999999876
No 246
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.98 E-value=0.0089 Score=50.19 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
++++|+|+.|+|||||++.+....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999988776
No 247
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.98 E-value=0.025 Score=52.45 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=23.6
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 154 ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 154 ~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
....+|+|.|+.|+|||||++.+....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999998865
No 248
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.98 E-value=0.012 Score=51.91 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+++|.|+.|+|||||.+.++.-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999988654
No 249
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.96 E-value=0.013 Score=51.65 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.3
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.|+|.|++|+||||+++.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 250
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.95 E-value=0.028 Score=53.03 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=35.3
Q ss_pred HHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHH
Q 037625 150 CLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 202 (467)
Q Consensus 150 ~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 202 (467)
.+.+...+++.+.|-||+||||+|..++..+.. ...-..++-++.....+..
T Consensus 12 ~l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~-~~~g~~vllid~D~~~~l~ 63 (348)
T 3io3_A 12 IVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLAL-AQPNEQFLLISTDPAHNLS 63 (348)
T ss_dssp HHTCTTCSEEEEECSTTSSHHHHHHHHHHHHHH-HCTTSCEEEEECCSSCHHH
T ss_pred HhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHH-hcCCCeEEEEECCCCCChH
Confidence 334456789999999999999999999887720 0233456666665444333
No 251
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.94 E-value=0.013 Score=51.19 Aligned_cols=23 Identities=35% Similarity=0.313 Sum_probs=21.1
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.|+|.|++|+||||+++.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 252
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.94 E-value=0.016 Score=48.75 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.++++|.|+.|+|||||+..+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999998875
No 253
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.94 E-value=0.036 Score=52.00 Aligned_cols=51 Identities=25% Similarity=0.259 Sum_probs=36.3
Q ss_pred HhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHH
Q 037625 151 LAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKI 204 (467)
Q Consensus 151 L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 204 (467)
+.+...+++.+.|-||+||||+|..++..+ ...-..++-++.....+....
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~l---a~~g~~vllid~D~~~~l~~~ 61 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQL---AKVRRSVLLLSTDPAHNLSDA 61 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHH---TTSSSCEEEEECCSSCHHHHH
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHH---HhCCCcEEEEECCCCCChhHH
Confidence 444557889999999999999999999887 233445677776654444333
No 254
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.92 E-value=0.042 Score=52.12 Aligned_cols=37 Identities=27% Similarity=0.424 Sum_probs=28.7
Q ss_pred HHHHHHHHh--cCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 144 LEQVWRCLA--EESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 144 ~~~l~~~L~--~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+.+.+. .++..+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 444555554 3467799999999999999999988765
No 255
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.92 E-value=0.11 Score=51.92 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=37.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKK 211 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 211 (467)
...++.|.|.+|+|||||+.+++.+... ..-..++|++... +..++...++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~--~~g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGT--AMGKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTT--TSCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHH--hcCCcEEEEeccC--CHHHHHHHHHHH
Confidence 3458999999999999999999887721 1134677776644 456666665443
No 256
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.91 E-value=0.015 Score=51.62 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...|.|.|++|+||||+|+.+++.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999886
No 257
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.91 E-value=0.014 Score=52.35 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=22.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...|+|+|+.|+||||+++.++...
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999876
No 258
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.90 E-value=0.016 Score=51.56 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=32.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQED 207 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 207 (467)
...++.|.|++|+|||||+.+++..... .-..++|++.... ..++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~~--~~~~~~~ 69 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEEH--PVQVRQN 69 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSSC--HHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccCC--HHHHHHH
Confidence 3458999999999999999888766521 2245777765443 3444433
No 259
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.90 E-value=0.016 Score=53.09 Aligned_cols=23 Identities=30% Similarity=0.666 Sum_probs=20.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHh
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINN 178 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~ 178 (467)
..+|+|.|+.|+||||+|+.+..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999983
No 260
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.89 E-value=0.02 Score=56.11 Aligned_cols=96 Identities=13% Similarity=0.102 Sum_probs=53.1
Q ss_pred HHHHhc-CCCcEEEEEccCCCcHHHHH-HHHHhcccCCCCCCCe-EEEEEeCCC-CCHHHHHHHHHHHhcCCC-----CC
Q 037625 148 WRCLAE-ESAGIIGLYGMGGVGKTTLL-THINNKFLESPTNFDC-VIWVVVSKD-LRLEKIQEDIGKKIGLVG-----DS 218 (467)
Q Consensus 148 ~~~L~~-~~~~~i~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~~-----~~ 218 (467)
++.+.. .+-..++|.|.+|+|||+|| ..+.+.. ..+. .+++-+.+. ....++.+.+...-.+.. ..
T Consensus 166 ID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~at 240 (515)
T 2r9v_A 166 IDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVAS 240 (515)
T ss_dssp HHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEEC
T ss_pred cccccccccCCEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEEC
Confidence 444432 34456899999999999996 5676654 2343 355556544 456677777665321100 00
Q ss_pred CCCcCHH-HH----HHHHHHHh--cCCcEEEEeCCCC
Q 037625 219 WKSRSVE-EK----ALDIFRSL--REKRIVLLLDDIW 248 (467)
Q Consensus 219 ~~~~~~~-~~----~~~l~~~l--~~k~~LlVlDdv~ 248 (467)
.+..... .. .-.+.+++ +++.+||++||+.
T Consensus 241 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 241 ASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 0111111 11 11222333 5799999999984
No 261
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.87 E-value=0.024 Score=52.53 Aligned_cols=42 Identities=24% Similarity=0.393 Sum_probs=31.2
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCC
Q 037625 154 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD 198 (467)
Q Consensus 154 ~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~ 198 (467)
...++|+|+|-||+||||+|..++..+.+ .-..++-++....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~---~G~~VlliD~D~~ 80 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI---LGKRVLQIGCDPK 80 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEESSS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHH---CCCeEEEEeCCCC
Confidence 46788999999999999999999888732 2335666766543
No 262
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.80 E-value=0.12 Score=51.29 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.++|+|+|.+|+||||++..++..+
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998776
No 263
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.80 E-value=0.019 Score=56.10 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=53.2
Q ss_pred HHHHhc-CCCcEEEEEccCCCcHHHHH-HHHHhcccCCCCCCC-eEEEEEeCCC-CCHHHHHHHHHHHhcCCCCC----C
Q 037625 148 WRCLAE-ESAGIIGLYGMGGVGKTTLL-THINNKFLESPTNFD-CVIWVVVSKD-LRLEKIQEDIGKKIGLVGDS----W 219 (467)
Q Consensus 148 ~~~L~~-~~~~~i~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~----~ 219 (467)
++.+.. .+-..++|.|.+|+|||+|| ..+.+.. ..+ ..+++-+.+. ....++.+.+...-...... .
T Consensus 153 ID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~at 227 (502)
T 2qe7_A 153 IDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTAS 227 (502)
T ss_dssp HHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEEC
T ss_pred cccccccccCCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEEC
Confidence 444432 33456899999999999995 5677764 234 3355555544 45667777766532211000 0
Q ss_pred CCcCH-HHH-----HHHHHHHh--cCCcEEEEeCCCC
Q 037625 220 KSRSV-EEK-----ALDIFRSL--REKRIVLLLDDIW 248 (467)
Q Consensus 220 ~~~~~-~~~-----~~~l~~~l--~~k~~LlVlDdv~ 248 (467)
...+. ... .-.+.+++ +++.+||++||+.
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 228 ASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 11111 111 11222333 5799999999984
No 264
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.79 E-value=0.047 Score=61.62 Aligned_cols=86 Identities=17% Similarity=0.151 Sum_probs=57.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCC---CCcCHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSW---KSRSVEEKALDI 231 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 231 (467)
...++.|+|++|+||||||.+++..... .-..++|++.....+.. .+..++...+.. ...+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~---~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 453 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---hCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHH
Confidence 3568999999999999999998887622 23478888877766543 245555432211 233455555555
Q ss_pred HHHh-cCCcEEEEeCCCC
Q 037625 232 FRSL-REKRIVLLLDDIW 248 (467)
Q Consensus 232 ~~~l-~~k~~LlVlDdv~ 248 (467)
.... +.+.-+||+|.+.
T Consensus 454 ~~lv~~~~~~lVVIDSL~ 471 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVA 471 (1706)
T ss_dssp HHHHHHTCCSEEEESCST
T ss_pred HHHHHhcCCCEEEECCHH
Confidence 5444 3456799999985
No 265
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.79 E-value=0.017 Score=51.44 Aligned_cols=26 Identities=23% Similarity=0.526 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|+|+.|+|||||++.++.-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998765
No 266
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.76 E-value=0.11 Score=52.72 Aligned_cols=26 Identities=35% Similarity=0.634 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|+|||||.+.+....
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34689999999999999999998765
No 267
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.74 E-value=0.033 Score=50.02 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=28.5
Q ss_pred HHHHHHHHhcC--CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 144 LEQVWRCLAEE--SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 144 ~~~l~~~L~~~--~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+..++... ....+.++|++|+|||.+|..+++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 34466666543 24579999999999999999999864
No 268
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.74 E-value=0.0095 Score=60.71 Aligned_cols=45 Identities=20% Similarity=0.160 Sum_probs=31.8
Q ss_pred ccccchHHHHHHHHHHhcCCCc-----------EEEEEccCCCcHHHHHHHHHhcc
Q 037625 136 TVVGLQSQLEQVWRCLAEESAG-----------IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 136 ~~vGr~~~~~~l~~~L~~~~~~-----------~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.++|.+..++.+.-.+..+..+ .+.++|++|+|||+||+.+++..
T Consensus 296 ~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred hhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 4567766555554444433211 58999999999999999988765
No 269
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.73 E-value=0.018 Score=52.92 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=22.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.++|+|.|+.|+||||||..++...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999999876
No 270
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.72 E-value=0.015 Score=52.95 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=22.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+++|.|+.|+|||||++.++.-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4689999999999999999998754
No 271
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.71 E-value=0.017 Score=52.15 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|+|||||.+.++.-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998754
No 272
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=94.70 E-value=0.043 Score=53.57 Aligned_cols=95 Identities=15% Similarity=0.110 Sum_probs=53.3
Q ss_pred HHHHhc-CCCcEEEEEccCCCcHHHHH-HHHHhcccCCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHhcCCC------CC
Q 037625 148 WRCLAE-ESAGIIGLYGMGGVGKTTLL-THINNKFLESPTNFDCVIWVVVSKD-LRLEKIQEDIGKKIGLVG------DS 218 (467)
Q Consensus 148 ~~~L~~-~~~~~i~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~------~~ 218 (467)
++.+.. .+-..++|.|..|+|||+|+ ..+.+.. ..-..++++-+.+. ....++.+.+...-.+.. ..
T Consensus 153 ID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~ata 228 (513)
T 3oaa_A 153 VDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATA 228 (513)
T ss_dssp HHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECT
T ss_pred eccccccccCCEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECC
Confidence 444432 33456899999999999996 5666643 22223456666654 456677777654321110 00
Q ss_pred CCCcC--------HHHHHHHHHHHhcCCcEEEEeCCCC
Q 037625 219 WKSRS--------VEEKALDIFRSLREKRIVLLLDDIW 248 (467)
Q Consensus 219 ~~~~~--------~~~~~~~l~~~l~~k~~LlVlDdv~ 248 (467)
..+.. .-...++++. +++.+||++||+.
T Consensus 229 d~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dslt 264 (513)
T 3oaa_A 229 SESAALQYLAPYAGCAMGEYFRD--RGEDALIIYDDLS 264 (513)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEETHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHh--cCCCEEEEecChH
Confidence 01111 1122233332 5899999999984
No 273
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.68 E-value=0.034 Score=54.80 Aligned_cols=39 Identities=23% Similarity=0.384 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 141 QSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 141 ~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...++.+...+.+++ +.+.|.|++|+||||++..+...+
T Consensus 31 ~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 31 KNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 334444555555443 489999999999999999988877
No 274
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.66 E-value=0.02 Score=52.95 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=22.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+++|+|+.|+||||+++.++...
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998876
No 275
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.65 E-value=0.014 Score=50.96 Aligned_cols=25 Identities=36% Similarity=0.660 Sum_probs=22.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+++|.|+.|+|||||.+.++.-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999998765
No 276
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.65 E-value=0.016 Score=51.64 Aligned_cols=26 Identities=38% Similarity=0.538 Sum_probs=22.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|+|||||.+.++.-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998754
No 277
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.64 E-value=0.029 Score=50.66 Aligned_cols=110 Identities=16% Similarity=0.160 Sum_probs=56.5
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCC-CCCHHHHHHHHHH--HhcCCCCCCCCcCHHHHHHH
Q 037625 154 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK-DLRLEKIQEDIGK--KIGLVGDSWKSRSVEEKALD 230 (467)
Q Consensus 154 ~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~~~ 230 (467)
....+++|+|+.|+|||||++.+..... ..+...+++.-.. ..-.... ..+.. .++. ... .....
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~---~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl-----~~~---~l~~~ 90 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE-----DTK---SFADA 90 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH---HHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT-----TBS---CHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC---CCCCCEEEEcCCcceeecCCc-ceeeeHHHhCC-----CHH---HHHHH
Confidence 4457999999999999999999887651 1112223222111 0000000 00000 0000 011 12344
Q ss_pred HHHHhcCCcEEEEeCCCCChhhhhhhccCCCCCCCCCceEEEecCChhh
Q 037625 231 IFRSLREKRIVLLLDDIWERVDLTKVGVPLSGPKNTTSKVVFTTRFIGV 279 (467)
Q Consensus 231 l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iiiTtR~~~~ 279 (467)
+...|..++=+|++|+..+......+.... ..|..|++||.+...
T Consensus 91 la~aL~~~p~illlDEp~D~~~~~~~l~~~----~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 91 LRAALREDPDVIFVGEMRDLETVETALRAA----ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHHHHHCCSEEEESCCCSHHHHHHHHHHH----HTTCEEEEEECCSSH
T ss_pred HHHHHhhCCCEEEeCCCCCHHHHHHHHHHH----ccCCEEEEEeCcchH
Confidence 555555567789999997554433332211 235668888887654
No 278
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.63 E-value=0.016 Score=52.22 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+++|.|+.|+|||||.+.++.-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999997754
No 279
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.63 E-value=0.018 Score=51.65 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
..+++|.|+.|+|||||++.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 280
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.62 E-value=0.05 Score=47.41 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...|+|.|+.|+||||+++.+.+.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999887
No 281
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.61 E-value=0.018 Score=49.08 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=22.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+.|.|.|++|+||||||..+....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3578999999999999999998765
No 282
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.61 E-value=0.017 Score=52.42 Aligned_cols=26 Identities=31% Similarity=0.574 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|+|+.|+|||||++.++.-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34689999999999999999998754
No 283
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=94.59 E-value=0.04 Score=53.95 Aligned_cols=86 Identities=16% Similarity=0.210 Sum_probs=50.1
Q ss_pred CcEEEEEccCCCcHHHHH-HHHHhcccCCCCCCC-eEEEEEeCCC-CCHHHHHHHHHHHhcC--------CCCCCCC---
Q 037625 156 AGIIGLYGMGGVGKTTLL-THINNKFLESPTNFD-CVIWVVVSKD-LRLEKIQEDIGKKIGL--------VGDSWKS--- 221 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~~~~~-~~~~~~~~~i~~~l~~--------~~~~~~~--- 221 (467)
-..++|.|.+|+|||+|| ..+.+.. . .+ ..+++-+.+. ....++.+.+...-.. ..+....
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~---~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~ 237 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ---G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQY 237 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC---T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTT
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh---c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHH
Confidence 346789999999999995 5677654 2 33 3455555544 4566666666543111 0010000
Q ss_pred ---cCHHHHHHHHHHHhcCCcEEEEeCCCC
Q 037625 222 ---RSVEEKALDIFRSLREKRIVLLLDDIW 248 (467)
Q Consensus 222 ---~~~~~~~~~l~~~l~~k~~LlVlDdv~ 248 (467)
...-...++++. +++.+||++||+.
T Consensus 238 ~a~~~a~tiAEyfrd--~G~dVLli~Dslt 265 (507)
T 1fx0_A 238 LAPYTGAALAEYFMY--RERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHHHHH--TTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHH--cCCcEEEEEecHH
Confidence 112233344444 5899999999984
No 284
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.58 E-value=0.056 Score=53.12 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=35.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIG 209 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 209 (467)
...++.|.|.+|+|||||+..++...... .-..++|++... +..++...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCC--CHHHHHHHHH
Confidence 34589999999999999999998876211 123577776543 4456655554
No 285
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.58 E-value=0.02 Score=51.77 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|+|||||++.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 44689999999999999999988754
No 286
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.55 E-value=0.011 Score=54.49 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=20.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+..+|+|.|+.|+||||+|+.+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998865
No 287
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.55 E-value=0.019 Score=52.04 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=22.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
...+++|+|+.|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999875
No 288
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.53 E-value=0.021 Score=48.78 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++|+|++|+|||||.+.+....
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998764
No 289
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.53 E-value=0.018 Score=51.59 Aligned_cols=25 Identities=36% Similarity=0.634 Sum_probs=22.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+++|+|+.|+|||||++.++.-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999997764
No 290
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.52 E-value=0.06 Score=52.08 Aligned_cols=34 Identities=29% Similarity=0.348 Sum_probs=27.1
Q ss_pred HHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 146 QVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 146 ~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+.+.+ .....+++|+|+.|+|||||.+.+....
T Consensus 158 ~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 158 NFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp HHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 344443 3556799999999999999999998876
No 291
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.52 E-value=0.018 Score=51.44 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=22.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|+|+.|+|||||.+.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999987654
No 292
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.49 E-value=0.018 Score=51.76 Aligned_cols=26 Identities=42% Similarity=0.584 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|+|||||.+.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998754
No 293
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.46 E-value=0.024 Score=52.24 Aligned_cols=27 Identities=15% Similarity=0.242 Sum_probs=23.1
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 154 ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 154 ~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
....+++|+|+.|+|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345689999999999999999988654
No 294
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.46 E-value=0.021 Score=52.78 Aligned_cols=23 Identities=35% Similarity=0.341 Sum_probs=21.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHhc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999875
No 295
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.45 E-value=0.043 Score=47.18 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=21.3
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.|+|-|.-|+||||.++.+++.+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999988
No 296
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.43 E-value=0.019 Score=51.38 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=22.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+++|.|+.|+|||||.+.++.-.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4589999999999999999998765
No 297
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.42 E-value=0.025 Score=46.32 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+.|+|.|.+|+|||||+..+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998753
No 298
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.41 E-value=0.023 Score=51.34 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|+|+.|+|||||++.++.-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34689999999999999999998754
No 299
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.38 E-value=0.023 Score=51.60 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|+|+.|+|||||++.++.-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999998755
No 300
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.35 E-value=0.024 Score=55.08 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+|.|+|++|+||||+|+.++...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998765
No 301
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.32 E-value=0.026 Score=54.53 Aligned_cols=92 Identities=12% Similarity=0.225 Sum_probs=51.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCC--------CCCC-eEEEEEeC-CCCCHHHHHHHHHHHhcCC-----CCCCC
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESP--------TNFD-CVIWVVVS-KDLRLEKIQEDIGKKIGLV-----GDSWK 220 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~--------~~f~-~~~wv~~~-~~~~~~~~~~~i~~~l~~~-----~~~~~ 220 (467)
-..++|.|.+|+|||+|+.++++.. ... ++-+ .++++-+. +.....++...+...-... ....+
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~-~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d 225 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQA-TVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKAD 225 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHC-BCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETT
T ss_pred CCEEEEecCCCCCchHHHHHHHHHH-HhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCC
Confidence 3457899999999999999998876 221 1222 44455554 4445667777655421110 00001
Q ss_pred CcCHHH-----HHHHHHHHh---cCCcEEEEeCCCC
Q 037625 221 SRSVEE-----KALDIFRSL---REKRIVLLLDDIW 248 (467)
Q Consensus 221 ~~~~~~-----~~~~l~~~l---~~k~~LlVlDdv~ 248 (467)
...... ..-.+.+++ +++.+||++||+.
T Consensus 226 ~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 226 DPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp SCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 111111 112233443 3789999999984
No 302
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.32 E-value=0.021 Score=52.14 Aligned_cols=26 Identities=42% Similarity=0.539 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|+|+.|+|||||.+.++.-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999999998755
No 303
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.31 E-value=0.021 Score=51.29 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=22.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+++|.|+.|+|||||.+.++.-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998765
No 304
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.30 E-value=0.025 Score=51.30 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|+|+.|+|||||.+.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999999987754
No 305
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.30 E-value=0.023 Score=48.78 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..|+|+|++|+|||||.+.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 458999999999999999998763
No 306
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.27 E-value=0.025 Score=46.85 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHhc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
..|+|.|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 307
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.26 E-value=0.038 Score=54.73 Aligned_cols=44 Identities=11% Similarity=-0.006 Sum_probs=32.7
Q ss_pred cccchHHHHHHHHHHh--cCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 137 VVGLQSQLEQVWRCLA--EESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 137 ~vGr~~~~~~l~~~L~--~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+.|.+-.+.+.+... ..+..+|.+.|++|+||||+|+.++..+
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 3555555555555542 2345689999999999999999999998
No 308
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.25 E-value=0.021 Score=48.42 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHHHHHhc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
-|+|+|.+|+|||||+..+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998874
No 309
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.24 E-value=0.041 Score=48.04 Aligned_cols=23 Identities=26% Similarity=0.190 Sum_probs=20.8
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.|.+.|.||+||||++..++...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 48899999999999999988877
No 310
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.23 E-value=0.025 Score=51.68 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..++.|+|++|+|||||+..++...
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999988755
No 311
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.23 E-value=0.028 Score=53.55 Aligned_cols=27 Identities=22% Similarity=0.066 Sum_probs=23.6
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 154 ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 154 ~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
....+++|+|++|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345699999999999999999999765
No 312
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.20 E-value=0.029 Score=53.09 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=22.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+++|+|+.|+||||+++.++...
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4589999999999999999998876
No 313
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.18 E-value=0.029 Score=49.92 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=22.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...|+|.|..|+||||+++.+++.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999887
No 314
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.16 E-value=0.057 Score=47.78 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=23.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...|.|.|+.|+||||+++.+.+.+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999887
No 315
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.14 E-value=0.027 Score=51.13 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.7
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.++|+|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 316
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.13 E-value=0.035 Score=53.72 Aligned_cols=90 Identities=14% Similarity=0.183 Sum_probs=51.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCC-CCCC-eEEEEEeC-CCCCHHHHHHHHHHHhcCC-----CCCCCCcCHHH--
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKFLESP-TNFD-CVIWVVVS-KDLRLEKIQEDIGKKIGLV-----GDSWKSRSVEE-- 226 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~~~~~-~~f~-~~~wv~~~-~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~-- 226 (467)
..++|.|.+|+|||+|+.++++.. ... ++-+ .++++-+. +.....++...+...-... ... ...+...
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~-~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~at-sd~p~~~r~ 229 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQA-TVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNL-ANDPAIERI 229 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHC-BCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEE-TTSCHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHH-HhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEEC-CCCCHHHHH
Confidence 457899999999999999999876 221 1122 44455554 4456677777765531110 000 1111111
Q ss_pred ----HHHHHHHHh---cCCcEEEEeCCCC
Q 037625 227 ----KALDIFRSL---REKRIVLLLDDIW 248 (467)
Q Consensus 227 ----~~~~l~~~l---~~k~~LlVlDdv~ 248 (467)
..-.+.+++ .++.+||++||+.
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 111233443 3789999999984
No 317
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.12 E-value=0.053 Score=45.85 Aligned_cols=34 Identities=26% Similarity=0.538 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhc
Q 037625 145 EQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 145 ~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
..+.+ +...+...|+|+|.+|+|||||...+.+.
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34555 33445567899999999999999998854
No 318
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.09 E-value=0.031 Score=49.62 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+|+|.|+.|+||||+++.+...+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998865
No 319
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.08 E-value=0.033 Score=47.05 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.3
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+.+|+|+.|+|||||+..++.-+
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 488999999999999999987754
No 320
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=94.05 E-value=0.035 Score=54.45 Aligned_cols=101 Identities=12% Similarity=0.100 Sum_probs=54.2
Q ss_pred HHHHhc-CCCcEEEEEccCCCcHHHHH-HHHHhcccC---CCCCCC-eEEEEEeCCC-CCHHHHHHHHHHHhcCCC----
Q 037625 148 WRCLAE-ESAGIIGLYGMGGVGKTTLL-THINNKFLE---SPTNFD-CVIWVVVSKD-LRLEKIQEDIGKKIGLVG---- 216 (467)
Q Consensus 148 ~~~L~~-~~~~~i~I~G~~GiGKTtLa-~~v~~~~~~---~~~~f~-~~~wv~~~~~-~~~~~~~~~i~~~l~~~~---- 216 (467)
++.+.. .+-..++|.|.+|+|||+|| ..+.+.... ...+.+ .++++-+.+. ....++.+.+...-.+..
T Consensus 153 ID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV 232 (510)
T 2ck3_A 153 VDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVV 232 (510)
T ss_dssp HHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred eccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEE
Confidence 444432 33456899999999999995 566666510 012233 3556666644 456677777665321110
Q ss_pred -CCCCCcCHHH-H----HHHHHHHh--cCCcEEEEeCCCC
Q 037625 217 -DSWKSRSVEE-K----ALDIFRSL--REKRIVLLLDDIW 248 (467)
Q Consensus 217 -~~~~~~~~~~-~----~~~l~~~l--~~k~~LlVlDdv~ 248 (467)
...+...... . .-.+.+++ .++.+||++||+.
T Consensus 233 ~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 233 SATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp EECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 0001111111 1 11122333 5799999999984
No 321
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.04 E-value=0.053 Score=48.77 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...++.+.|.||+||||++..++...
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 35688999999999999999999876
No 322
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.03 E-value=0.12 Score=52.55 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=22.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
....++|+|+.|+|||||++.+..-.
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45689999999999999999887654
No 323
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.03 E-value=0.029 Score=53.55 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=22.3
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
++|+|.|+.|+||||||..++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 589999999999999999999876
No 324
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.01 E-value=0.028 Score=51.75 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=32.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDI 208 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 208 (467)
...+++|.|++|+|||||+..++...... .-..++|++... ...++...+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~--~~~~~~~r~ 83 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEE--SVEETAEDL 83 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSS--CHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcC--CHHHHHHHH
Confidence 34689999999999999999998876211 122466665432 334444443
No 325
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.99 E-value=0.07 Score=46.44 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=22.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..|.|.|+.|+||||+++.+.+.+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999887
No 326
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.98 E-value=0.03 Score=45.92 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.3
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.|++.|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999998654
No 327
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.97 E-value=0.11 Score=55.37 Aligned_cols=22 Identities=18% Similarity=0.099 Sum_probs=20.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHI 176 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v 176 (467)
...+++|+|+.|.||||+.+.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3578999999999999999988
No 328
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.97 E-value=0.027 Score=50.84 Aligned_cols=24 Identities=38% Similarity=0.476 Sum_probs=21.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
..+++|.|+.|+|||||.+.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998764
No 329
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.93 E-value=0.093 Score=59.26 Aligned_cols=85 Identities=19% Similarity=0.184 Sum_probs=60.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCC---CCcCHHHHHHHH
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSW---KSRSVEEKALDI 231 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 231 (467)
+.++|-|+|+.|+||||||.++.... ...-...+|+......+..- ++.++...+.. .+...++....+
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~---~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 35799999999999999999988766 34456788888777766553 66666544321 234446666666
Q ss_pred HHHhc-CCcEEEEeCCC
Q 037625 232 FRSLR-EKRIVLLLDDI 247 (467)
Q Consensus 232 ~~~l~-~k~~LlVlDdv 247 (467)
...++ +..-+||+|-|
T Consensus 1502 ~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHHTCCSEEEESCS
T ss_pred HHHHHcCCCCEEEEccH
Confidence 66664 46679999998
No 330
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.93 E-value=0.03 Score=52.84 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|+|||||.+.++.-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34689999999999999999998754
No 331
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.91 E-value=0.032 Score=46.01 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=20.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
--|+|+|.+|+|||||+..+.+..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 357899999999999999998754
No 332
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.88 E-value=0.027 Score=49.83 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=21.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
...+|+|.|+.|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999988764
No 333
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.84 E-value=0.039 Score=46.86 Aligned_cols=24 Identities=25% Similarity=0.163 Sum_probs=20.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.++.|+|+.|+||||++..++.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999997766654
No 334
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.84 E-value=0.033 Score=47.12 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHhc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
..|+|+|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 335
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.83 E-value=0.054 Score=46.87 Aligned_cols=110 Identities=20% Similarity=0.110 Sum_probs=52.0
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL 235 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 235 (467)
..+..++|+-|.||||.+.....+. . ..... ++.+....... .-...+.+.++...+.....+.. .+.+.+
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~-~-~~g~k-Vli~k~~~d~R--~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~ 98 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRT-Q-FAKQH-AIVFKPCIDNR--YSEEDVVSHNGLKVKAVPVSASK----DIFKHI 98 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH-H-HTTCC-EEEEECC-------------------CCEEECSSGG----GGGGGC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH-H-HCCCE-EEEEEeccCCc--chHHHHHhhcCCeeEEeecCCHH----HHHHHH
Confidence 4688999999999999998887776 2 12233 33333222111 11122333333322211111111 233333
Q ss_pred cCCcEEEEeCCCCC--hhhhhhhccCCCCCCCCCceEEEecCChh
Q 037625 236 REKRIVLLLDDIWE--RVDLTKVGVPLSGPKNTTSKVVFTTRFIG 278 (467)
Q Consensus 236 ~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iiiTtR~~~ 278 (467)
.++--+|++|++.- .+.++.+.... ..+..||+|.++.+
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l~~l~----~~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVVQVLA----NRGYRVIVAGLDQD 139 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHHHHHH----HTTCEEEEEECSBC
T ss_pred hcCCCEEEEECcccCCHHHHHHHHHHh----hCCCEEEEEecccc
Confidence 33334999999853 33343332211 23778999998654
No 336
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.82 E-value=0.059 Score=48.73 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=28.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCC
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK 197 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 197 (467)
++|+|.|-||+||||+|..++..+. ..-..++-++...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la---~~G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH---AMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH---TTTCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH---HCCCcEEEEcCCC
Confidence 5788899999999999999998872 2233566666643
No 337
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.78 E-value=0.035 Score=50.89 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|+|+.|+|||||.+.++.-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34689999999999999999998765
No 338
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.77 E-value=0.044 Score=53.33 Aligned_cols=92 Identities=15% Similarity=0.217 Sum_probs=52.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCC--CCCeEEEEEeC-CCCCHHHHHHHHHHHhcCCCC----CCCCcCHHH--
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPT--NFDCVIWVVVS-KDLRLEKIQEDIGKKIGLVGD----SWKSRSVEE-- 226 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~--~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~-- 226 (467)
-..++|.|.+|+|||+|+..++++. ...+ .-+.++++-+. +.....++..++...-..... .....+...
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~-~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~ 230 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQA-SVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERI 230 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHC-BCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH-hhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHH
Confidence 3457889999999999999999886 2211 12345555554 444667777777654211100 001111111
Q ss_pred ----HHHHHHHHh---cCCcEEEEeCCCC
Q 037625 227 ----KALDIFRSL---REKRIVLLLDDIW 248 (467)
Q Consensus 227 ----~~~~l~~~l---~~k~~LlVlDdv~ 248 (467)
..-.+.+++ +++.+||++||+.
T Consensus 231 ~~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 231 VTPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 111223333 4789999999973
No 339
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.74 E-value=0.033 Score=46.31 Aligned_cols=24 Identities=38% Similarity=0.380 Sum_probs=20.3
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.-|+|+|.+|+|||||+..+....
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEECCCCccHHHHHHHHhcCC
Confidence 358999999999999999987653
No 340
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.72 E-value=0.045 Score=46.49 Aligned_cols=26 Identities=31% Similarity=0.272 Sum_probs=22.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
....|+|+|.+|+|||||...+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998764
No 341
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.71 E-value=0.072 Score=47.41 Aligned_cols=42 Identities=29% Similarity=0.399 Sum_probs=30.7
Q ss_pred EEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHH
Q 037625 159 IGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEK 203 (467)
Q Consensus 159 i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 203 (467)
|+|.|-||+||||+|..++..+. ..-..++-++.....+...
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la---~~g~~VlliD~D~~~~l~~ 44 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMA---SDYDKIYAVDGDPDSCLGQ 44 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHT---TTCSCEEEEEECTTSCHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHH---HCCCeEEEEeCCCCcChHH
Confidence 66699999999999999999883 2235677777665444433
No 342
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=93.71 E-value=0.13 Score=50.82 Aligned_cols=57 Identities=18% Similarity=0.273 Sum_probs=39.9
Q ss_pred HHHHHhc-CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCC-CCHHHHHHHH
Q 037625 147 VWRCLAE-ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-LRLEKIQEDI 208 (467)
Q Consensus 147 l~~~L~~-~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i 208 (467)
.++.|.. .+-..++|.|..|+|||+|+.++++.. +-+.++++-+.+. ....+++..+
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4455542 344578999999999999999988764 2246777777654 4566666665
No 343
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.67 E-value=0.048 Score=45.51 Aligned_cols=26 Identities=31% Similarity=0.393 Sum_probs=22.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+...|+|+|.+|+|||||...+.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45678999999999999999987643
No 344
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.64 E-value=0.032 Score=46.89 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=21.3
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHh
Q 037625 154 ESAGIIGLYGMGGVGKTTLLTHINN 178 (467)
Q Consensus 154 ~~~~~i~I~G~~GiGKTtLa~~v~~ 178 (467)
.....|+|+|.+|+|||||...+..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4456789999999999999988874
No 345
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.64 E-value=0.037 Score=52.22 Aligned_cols=26 Identities=38% Similarity=0.563 Sum_probs=22.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|+|||||.+.++.-.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999998654
No 346
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.63 E-value=0.047 Score=47.51 Aligned_cols=26 Identities=31% Similarity=0.272 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
....|.|+|++|+|||||+..+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999998764
No 347
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.63 E-value=0.026 Score=51.03 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+...|+|.|..|+||||+++.+.+.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999998876
No 348
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.62 E-value=0.049 Score=47.89 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=20.0
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...|.|.|+.|+||||+++.+++.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999887
No 349
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.61 E-value=0.039 Score=45.38 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=20.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.-|+|.|.+|+|||||...+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 358899999999999999988654
No 350
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.61 E-value=0.03 Score=51.71 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|+|+.|+|||||++.+..-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 45689999999999999999987654
No 351
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.58 E-value=0.038 Score=52.57 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|+|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 34689999999999999999998754
No 352
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.58 E-value=0.039 Score=46.13 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHhc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999875
No 353
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.56 E-value=0.038 Score=52.19 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|+|||||.+.+..-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 34689999999999999999988754
No 354
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.56 E-value=0.039 Score=46.74 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.5
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.|+|+|.+|+|||||+..+....
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58899999999999999998754
No 355
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.56 E-value=0.04 Score=45.54 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=20.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
--|+|+|.+|+|||||...+....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999988653
No 356
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.55 E-value=0.042 Score=46.30 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=21.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
....|+|+|.+|+|||||...+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999998764
No 357
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.53 E-value=0.041 Score=45.20 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.2
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
-|+|+|.+|+|||||...+....
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999987653
No 358
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.52 E-value=0.041 Score=45.40 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.2
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
-|+|+|.+|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988654
No 359
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.51 E-value=0.061 Score=51.86 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|+|+.|+|||||.+.+....
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999998843
No 360
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.49 E-value=0.046 Score=51.65 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|+|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 34689999999999999999998754
No 361
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.49 E-value=0.042 Score=45.21 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.3
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
-|+|+|.+|+|||||...+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999988753
No 362
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.47 E-value=0.047 Score=51.68 Aligned_cols=26 Identities=35% Similarity=0.579 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|+|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34689999999999999999998754
No 363
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.47 E-value=0.042 Score=45.36 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.5
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
-|+|+|.+|+|||||...+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58899999999999999988764
No 364
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.46 E-value=0.052 Score=54.48 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+..+++|+|+.|+|||||++.++...
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 44689999999999999999999887
No 365
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.46 E-value=0.051 Score=46.21 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=21.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
+...|+|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998865
No 366
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.45 E-value=0.042 Score=46.39 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=20.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
--|+|+|.+|+|||||+..+.+..
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999988753
No 367
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.42 E-value=0.049 Score=46.96 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=23.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+|.|.|+.|+||||+++.+++.+
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999987
No 368
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.42 E-value=0.043 Score=45.37 Aligned_cols=23 Identities=30% Similarity=0.650 Sum_probs=20.2
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
-|+|+|.+|+|||||...+....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999998743
No 369
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.40 E-value=0.041 Score=48.01 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+|+|.|+.|+||||+++.+....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999998865
No 370
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.39 E-value=0.042 Score=45.40 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=19.3
Q ss_pred EEEEEccCCCcHHHHHHHHHhc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
-|+|+|.+|+|||||+..+...
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999998643
No 371
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.38 E-value=0.044 Score=45.85 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=21.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...|+|+|.+|+|||||+..+....
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3468999999999999999987654
No 372
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.38 E-value=0.092 Score=49.59 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+|+|+|++|+|||||...+....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998754
No 373
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.36 E-value=0.051 Score=47.60 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=24.2
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 154 ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 154 ~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.....|.|.|+.|+||||+++.+.+.+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999887
No 374
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.36 E-value=0.043 Score=52.20 Aligned_cols=25 Identities=36% Similarity=0.375 Sum_probs=22.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+++|.|+.|+|||||.+.++.-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC
Confidence 4589999999999999999998754
No 375
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.35 E-value=0.067 Score=49.01 Aligned_cols=39 Identities=26% Similarity=0.335 Sum_probs=28.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCC
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK 197 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 197 (467)
.++|+|.|-||+||||+|..++..+.+ .-..++-++...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~---~G~rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAE---MGKKVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHH---CCCeEEEEecCC
Confidence 367888999999999999999888722 223566666543
No 376
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.35 E-value=0.045 Score=45.63 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=20.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.-|+|+|.+|+|||||...+....
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999988653
No 377
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.35 E-value=0.043 Score=52.13 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|+|||||.+.++.-.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34689999999999999999998654
No 378
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.34 E-value=0.045 Score=46.31 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=20.3
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
--|+|+|.+|+|||||+..+.+..
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999998877653
No 379
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.34 E-value=0.045 Score=45.16 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.3
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
-|+|+|.+|+|||||...+....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999988653
No 380
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.34 E-value=0.035 Score=51.73 Aligned_cols=26 Identities=46% Similarity=0.549 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+.++++|+|+.|+|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 45789999999999999999998653
No 381
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.34 E-value=0.045 Score=44.97 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.5
Q ss_pred EEEEccCCCcHHHHHHHHHhcc
Q 037625 159 IGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 159 i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
|+|+|.+|+|||||...+....
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999987643
No 382
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.33 E-value=0.036 Score=45.71 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.4
Q ss_pred EEEEEccCCCcHHHHHHHHHhc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
-|+|+|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999988654
No 383
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.31 E-value=0.16 Score=56.73 Aligned_cols=26 Identities=23% Similarity=0.524 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
....++|+|+.|+|||||++.+..-.
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred CCcEEEEEecCCCcHHHHHHHhcccc
Confidence 45689999999999999999998765
No 384
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.30 E-value=0.05 Score=45.41 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=20.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
--|+|+|.+|+|||||+..+.+..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhCc
Confidence 358899999999999999987653
No 385
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.29 E-value=0.057 Score=45.80 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=21.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...|+|+|.+|+|||||...+....
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 4578999999999999999988763
No 386
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.28 E-value=0.25 Score=43.57 Aligned_cols=101 Identities=17% Similarity=0.257 Sum_probs=49.8
Q ss_pred HHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHH-hcccCCCCCC-CeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC----
Q 037625 145 EQVWRCLAEESAGIIGLYGMGGVGKTTLLTHIN-NKFLESPTNF-DCVIWVVVSKDLRLEKIQEDIGKKIGLVGDS---- 218 (467)
Q Consensus 145 ~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~-~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---- 218 (467)
+++...+..+ +.+.|.|+.|+||||+..... +.. ...... ...+.+.........++...+...++.....
T Consensus 67 ~~~i~~i~~g--~~~~i~g~TGsGKTt~~~~~~~~~~-~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~ 143 (235)
T 3llm_A 67 SEILEAISQN--SVVIIRGATGCGKTTQVPQFILDDF-IQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGY 143 (235)
T ss_dssp HHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHHH-HHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEE
T ss_pred HHHHHHHhcC--CEEEEEeCCCCCcHHhHHHHHhcch-hhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEE
Confidence 3344444333 588999999999998765543 222 111221 2223222232223334444554443321100
Q ss_pred --------------CCCcCHHHHHHHHHHHhcCCcEEEEeCCCCC
Q 037625 219 --------------WKSRSVEEKALDIFRSLREKRIVLLLDDIWE 249 (467)
Q Consensus 219 --------------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 249 (467)
....+...+...+...+.+ --+||+|+++.
T Consensus 144 ~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~-~~~lVlDEah~ 187 (235)
T 3llm_A 144 SVRFESILPRPHASIMFCTVGVLLRKLEAGIRG-ISHVIVDEIHE 187 (235)
T ss_dssp EETTEEECCCSSSEEEEEEHHHHHHHHHHCCTT-CCEEEECCTTS
T ss_pred eechhhccCCCCCeEEEECHHHHHHHHHhhhcC-CcEEEEECCcc
Confidence 0112345555555543333 35889999975
No 387
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.27 E-value=0.15 Score=44.07 Aligned_cols=24 Identities=29% Similarity=0.564 Sum_probs=22.3
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+.|+|-|..|+||||+++.+++.+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 478999999999999999999988
No 388
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.25 E-value=0.076 Score=46.43 Aligned_cols=108 Identities=12% Similarity=0.063 Sum_probs=51.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHh
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFRSL 235 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 235 (467)
..+..++|+-|.||||.+....++. . .......++-..-+...... +.+.++...+.....+..+ +.+..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~-~-~~g~kvli~kp~~D~Ryg~~----i~sr~G~~~~a~~i~~~~d----i~~~~ 88 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRF-Q-IAQYKCLVIKYAKDTRYSSS----FCTHDRNTMEALPACLLRD----VAQEA 88 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH-H-TTTCCEEEEEETTCCCC---------------CEEEEESSGGG----GHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHH-H-HCCCeEEEEeecCCccchHH----HHhhcCCeeEEEecCCHHH----HHHHh
Confidence 4588999999999998776666655 1 22333333332222211133 3333333221111111122 22222
Q ss_pred cCCcEEEEeCCCCChhhhhhhccCCCCCCCCCceEEEecCCh
Q 037625 236 REKRIVLLLDDIWERVDLTKVGVPLSGPKNTTSKVVFTTRFI 277 (467)
Q Consensus 236 ~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iiiTtR~~ 277 (467)
++--+|++|++.-.....++...+ ...|..||+|.++.
T Consensus 89 -~~~dvViIDEaQF~~~v~el~~~l---~~~gi~VI~~GL~~ 126 (234)
T 2orv_A 89 -LGVAVIGIDEGQFFPDIVEFCEAM---ANAGKTVIVAALDG 126 (234)
T ss_dssp -TTCSEEEESSGGGCTTHHHHHHHH---HHTTCEEEEECCSB
T ss_pred -ccCCEEEEEchhhhhhHHHHHHHH---HhCCCEEEEEeccc
Confidence 233499999985322244443333 12577999999974
No 389
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.25 E-value=0.061 Score=46.09 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=21.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
+...|+|+|.+|+|||||...+...
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999998753
No 390
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.24 E-value=0.2 Score=59.40 Aligned_cols=75 Identities=25% Similarity=0.274 Sum_probs=48.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC--C--CCCcCHHHHHHHHH
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGD--S--WKSRSVEEKALDIF 232 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~--~~~~~~~~~~~~l~ 232 (467)
+.+.++|++|+|||++|+.+.... ..+ ....++.+...+...+...+-..+..... + ..+.
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~----~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~---------- 1332 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS----SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPK---------- 1332 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC----SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEB----------
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC----CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCC----------
Confidence 578899999999999998777654 122 45567777777777776666554432100 0 0000
Q ss_pred HHhcCCcEEEEeCCCC
Q 037625 233 RSLREKRIVLLLDDIW 248 (467)
Q Consensus 233 ~~l~~k~~LlVlDdv~ 248 (467)
-.++++++.+||++
T Consensus 1333 --~~gk~~VlFiDEin 1346 (2695)
T 4akg_A 1333 --SDIKNLVLFCDEIN 1346 (2695)
T ss_dssp --SSSSCEEEEEETTT
T ss_pred --CCCceEEEEecccc
Confidence 03578899999974
No 391
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.23 E-value=0.042 Score=51.71 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|+|||||.+.++.-.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 34689999999999999999998754
No 392
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.23 E-value=0.048 Score=45.58 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=21.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..-|+|+|.+|+|||||...+.+..
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3468999999999999999988763
No 393
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.21 E-value=0.057 Score=51.47 Aligned_cols=113 Identities=16% Similarity=0.119 Sum_probs=57.9
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH
Q 037625 154 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLVGDSWKSRSVEEKALDIFR 233 (467)
Q Consensus 154 ~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 233 (467)
....+++|+|+.|+|||||++.+....... .-..++++.. .... ......+.........+.......+..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~--~~e~-----~~~~~~~~v~Q~~~g~~~~~~~~~l~~ 204 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIED--PIEY-----VFKHKKSIVNQREVGEDTKSFADALRA 204 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEES--SCCS-----CCCCSSSEEEEEEBTTTBSCSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecc--cHhh-----hhccCceEEEeeecCCCHHHHHHHHHH
Confidence 445689999999999999999988765111 0112223321 1110 000000000000000000112345666
Q ss_pred HhcCCcEEEEeCCCCChhhhhhhccCCCCCCCCCceEEEecCChhh
Q 037625 234 SLREKRIVLLLDDIWERVDLTKVGVPLSGPKNTTSKVVFTTRFIGV 279 (467)
Q Consensus 234 ~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iiiTtR~~~~ 279 (467)
.+...+-+|++|++.+........... ..|..++.|+.....
T Consensus 205 ~L~~~pd~illdE~~d~e~~~~~l~~~----~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 205 ALREDPDVIFVGEMRDLETVETALRAA----ETGHLVFGTLHTNTA 246 (372)
T ss_dssp HTTSCCSEEEESCCCSHHHHHHHHHHH----TTTCEEEECCCCCSH
T ss_pred HhhhCcCEEEECCCCCHHHHHHHHHHH----hcCCEEEEEECcchH
Confidence 676677899999997655444332221 235567778776543
No 394
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.20 E-value=0.049 Score=46.19 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=20.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
--|+|+|.+|+|||||+..+.+..
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCcHHHHHHHHHhCC
Confidence 358999999999999998887653
No 395
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.18 E-value=0.046 Score=46.18 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.3
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
-|+|.|.+|+|||||...+....
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999988754
No 396
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.16 E-value=0.051 Score=44.82 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.2
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
-|+|+|.+|+|||||...+....
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999988643
No 397
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.16 E-value=0.44 Score=42.05 Aligned_cols=39 Identities=21% Similarity=0.067 Sum_probs=27.3
Q ss_pred cchHHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 139 GLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 139 Gr~~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
-++.+.+.+..++... -+.|+|+.|.|||.+|..+....
T Consensus 94 l~~~Q~~ai~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 94 LRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCHHHHHHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHhCC---CEEEEeCCCCCHHHHHHHHHHHc
Confidence 3455555555554332 37899999999999998887764
No 398
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.16 E-value=0.087 Score=54.33 Aligned_cols=62 Identities=21% Similarity=0.295 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 037625 142 SQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIG 209 (467)
Q Consensus 142 ~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 209 (467)
.+.+.+...|... .+..|+||+|+|||+.+.++....... ...+.++...+..+..+...+.
T Consensus 193 ~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~~----~~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 193 SQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVKQ----GLKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp HHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHHT----TCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEcCchHHHHHHHHHHH
Confidence 4556666666533 477899999999996655544433121 1245566555555666666654
No 399
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.15 E-value=0.1 Score=49.06 Aligned_cols=27 Identities=41% Similarity=0.524 Sum_probs=24.1
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 154 ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 154 ~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
....+++|.|+.|+|||||.+.+....
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999999986
No 400
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.15 E-value=0.05 Score=46.29 Aligned_cols=24 Identities=38% Similarity=0.600 Sum_probs=20.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
...|+|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999998874
No 401
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=93.13 E-value=0.13 Score=48.68 Aligned_cols=50 Identities=22% Similarity=0.180 Sum_probs=32.9
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHH
Q 037625 154 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKI 204 (467)
Q Consensus 154 ~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 204 (467)
....++...|-||+||||+|..++..+.. ...-..++-++.....++..+
T Consensus 16 ~~~~i~v~sgKGGvGKTTvaanLA~~lA~-~~~G~rVLLvD~D~~~~l~~~ 65 (354)
T 2woj_A 16 TTHKWIFVGGKGGVGKTTSSCSIAIQMAL-SQPNKQFLLISTDPAHNLSDA 65 (354)
T ss_dssp SSCCEEEEEESTTSSHHHHHHHHHHHHHH-HCTTSCEEEEECCSSCCHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHH-hcCCCeEEEEECCCCCCHHHH
Confidence 34567788899999999999998887720 023335666665544444443
No 402
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.08 E-value=0.087 Score=49.99 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...++|+|+.|+|||||++.+....
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 4589999999999999999999876
No 403
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.07 E-value=0.054 Score=46.03 Aligned_cols=24 Identities=46% Similarity=0.397 Sum_probs=20.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
--|+|+|.+|+|||||++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 358999999999999998776654
No 404
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.06 E-value=0.054 Score=44.81 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=20.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..|+|+|.+|+|||||...+....
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999997653
No 405
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.06 E-value=0.049 Score=51.87 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=22.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...++|+|+.|+|||||++.++...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998775
No 406
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.05 E-value=0.053 Score=45.17 Aligned_cols=24 Identities=33% Similarity=0.303 Sum_probs=21.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.-|+|+|.+|+|||||...+....
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999988654
No 407
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.03 E-value=0.053 Score=45.64 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=20.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.-|+|+|.+|+|||||+..+.+..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 458999999999999999988654
No 408
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.02 E-value=0.058 Score=44.81 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=20.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHhc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
+-|.|.|++|+||||||..+..+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 46899999999999999998774
No 409
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.02 E-value=0.049 Score=47.82 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=21.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...++|.|++|+||||+|+.+.+..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999998876
No 410
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.01 E-value=0.054 Score=45.14 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.1
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
-|+|+|.+|+|||||...+....
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999988643
No 411
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.99 E-value=0.055 Score=45.45 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
--|+|+|.+|+|||||+..+.+..
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999988754
No 412
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.98 E-value=0.043 Score=45.88 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.3
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
-|+|+|.+|+|||||+..+.+..
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58899999999999999988753
No 413
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=92.97 E-value=0.12 Score=48.33 Aligned_cols=44 Identities=25% Similarity=0.230 Sum_probs=31.1
Q ss_pred cCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCC
Q 037625 153 EESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL 199 (467)
Q Consensus 153 ~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~ 199 (467)
++...++.+.|-||+||||+|..++..+. ..-..+.-++.....
T Consensus 16 ~~~~~i~v~sgkGGvGKTTva~~LA~~lA---~~G~rVllvD~D~~~ 59 (329)
T 2woo_A 16 QTSLKWIFVGGKGGVGKTTTSCSLAIQMS---KVRSSVLLISTDPAH 59 (329)
T ss_dssp CTTCCEEEEECSSSSSHHHHHHHHHHHHH---TSSSCEEEEECCTTC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHH---HCCCeEEEEECCCCc
Confidence 34456788889999999999999988872 223356666655433
No 414
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.96 E-value=0.055 Score=45.60 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.5
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
-|+|+|.+|+|||||...+.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48899999999999999998654
No 415
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.96 E-value=0.04 Score=52.02 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=22.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|+|||||.+.++.-.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999998654
No 416
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.94 E-value=0.054 Score=51.84 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=22.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|.|+.|+|||||.+.++.-.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 34689999999999999999998643
No 417
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.92 E-value=0.064 Score=50.39 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=23.5
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 154 ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 154 ~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
....+++|+|++|+|||||.+.+....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 456799999999999999999998654
No 418
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.91 E-value=0.057 Score=45.70 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=20.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.-|+|+|.+|+|||||+..+.+..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998753
No 419
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.89 E-value=0.057 Score=45.86 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=20.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.-|+|+|.+|+|||||...+....
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 458999999999999999988754
No 420
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.89 E-value=0.046 Score=45.68 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..-|+|+|.+|+|||||+..+....
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999987653
No 421
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.88 E-value=0.058 Score=45.32 Aligned_cols=23 Identities=35% Similarity=0.379 Sum_probs=20.1
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
-|+|+|.+|+|||||...+.+..
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999988653
No 422
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.83 E-value=0.06 Score=45.03 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=20.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.-|+|+|.+|+|||||...+....
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999988653
No 423
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.82 E-value=0.06 Score=45.24 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=20.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.-|+|+|.+|+|||||+..+....
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 468999999999999999988654
No 424
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.81 E-value=0.06 Score=45.06 Aligned_cols=24 Identities=33% Similarity=0.265 Sum_probs=20.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
--|+|+|.+|+|||||...+....
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999988653
No 425
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.79 E-value=0.058 Score=46.06 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=21.0
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..-|+|+|.+|+|||||++.+.+..
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcC
Confidence 3468999999999999999777654
No 426
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.79 E-value=0.061 Score=45.09 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=20.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..|+|+|.+|+|||||+..+.+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999988543
No 427
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.79 E-value=0.15 Score=44.31 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=23.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...|.|.|+.|+||||+++.+.+.+
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999988
No 428
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.76 E-value=0.079 Score=45.54 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=30.2
Q ss_pred cEEEEE-ccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHH
Q 037625 157 GIIGLY-GMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 202 (467)
Q Consensus 157 ~~i~I~-G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 202 (467)
++|+|+ +-||+||||++..++..+. ..-..++.++.....+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la---~~g~~vlliD~D~~~~~~ 45 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALS---RSGYNIAVVDTDPQMSLT 45 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHH---HTTCCEEEEECCTTCHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHH---HCCCeEEEEECCCCCCHH
Confidence 567777 6799999999999988872 223356777766444433
No 429
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.75 E-value=0.061 Score=45.84 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=19.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHh
Q 037625 157 GIIGLYGMGGVGKTTLLTHINN 178 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~ 178 (467)
.-|+|+|.+|+|||||...+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999875
No 430
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.72 E-value=0.062 Score=45.83 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=21.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.--|+|+|.+|+|||||+..+....
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4468999999999999999988753
No 431
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.70 E-value=0.071 Score=43.44 Aligned_cols=25 Identities=36% Similarity=0.491 Sum_probs=21.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.++.+|+|+.|.||||+..+++.-+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3588999999999999999887543
No 432
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.69 E-value=0.068 Score=45.04 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=22.2
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 154 ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 154 ~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+...|+|.|.+|+|||||...+.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 345578999999999999999988654
No 433
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.69 E-value=0.063 Score=46.05 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..-|+|+|.+|+|||||+..+....
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999999987653
No 434
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.67 E-value=0.063 Score=45.62 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=20.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
--|+|+|.+|+|||||...+....
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999988654
No 435
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.67 E-value=0.065 Score=44.77 Aligned_cols=24 Identities=38% Similarity=0.420 Sum_probs=20.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
--|+|+|.+|+|||||...+....
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 358999999999999999988654
No 436
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.66 E-value=0.058 Score=45.38 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=24.7
Q ss_pred EEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCC
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD 198 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~ 198 (467)
++.|+|.+|+||||+|.+++.. ...++|+.-...
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-------~~~~~yiaT~~~ 34 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-------APQVLYIATSQI 34 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-------CSSEEEEECCCC
T ss_pred CEEEECCCCCcHHHHHHHHHhc-------CCCeEEEecCCC
Confidence 3789999999999999998753 123566654443
No 437
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.66 E-value=0.063 Score=46.34 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=21.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.--|+|+|.+|+|||||+..+....
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998764
No 438
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.65 E-value=0.064 Score=46.17 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=20.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.-|+|+|.+|+|||||+..+....
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468999999999999999987654
No 439
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.61 E-value=0.065 Score=46.04 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=21.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...|+|+|.+|+|||||+..+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468999999999999999987754
No 440
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.61 E-value=0.055 Score=49.94 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=18.9
Q ss_pred EEEEEccCCCcHHHHHHHHHhc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
-|+|+|++|+|||||.+.++..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4699999999999999997753
No 441
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.59 E-value=0.12 Score=51.98 Aligned_cols=43 Identities=14% Similarity=0.105 Sum_probs=30.5
Q ss_pred ccchHHHHHHHHHH--hcCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 138 VGLQSQLEQVWRCL--AEESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 138 vGr~~~~~~l~~~L--~~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+.|.+-.+.+.+.. ......+|.+.|++|+||||+|+.+...+
T Consensus 352 ~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 352 FTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHh
Confidence 44444444455544 12345689999999999999999998876
No 442
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.58 E-value=0.047 Score=53.13 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=22.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+|+|+|++|+||||++..++...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999988876
No 443
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.58 E-value=0.067 Score=45.27 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.-|+|+|.+|+|||||...+....
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999988654
No 444
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.58 E-value=0.066 Score=45.68 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
--|+|+|.+|+|||||+..+....
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 458999999999999999998764
No 445
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.57 E-value=0.065 Score=45.49 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=21.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
--|+|+|.+|+|||||+..+....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 458999999999999999988754
No 446
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.57 E-value=0.099 Score=48.24 Aligned_cols=33 Identities=27% Similarity=0.402 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 144 LEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 144 ~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
+++|.+.+. ..+++|.|++|+|||||.+.+. ..
T Consensus 156 i~~L~~~l~---G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLE---GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTT---TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhcc---CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 455555553 3588999999999999999998 54
No 447
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.57 E-value=0.032 Score=48.20 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=21.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
....|+|+|++|+|||||.+.+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4457999999999999999887654
No 448
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.54 E-value=0.067 Score=45.85 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=20.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.-|+|+|.+|+|||||+..+....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999988754
No 449
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.54 E-value=0.069 Score=45.23 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=20.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.-|+|+|.+|+|||||...+.+..
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998653
No 450
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=92.53 E-value=0.18 Score=50.01 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=39.2
Q ss_pred HHHHHhc-CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCC-CCHHHHHHHH
Q 037625 147 VWRCLAE-ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-LRLEKIQEDI 208 (467)
Q Consensus 147 l~~~L~~-~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i 208 (467)
.++.|.. .+-..++|.|..|+|||+|+.++.+.. +-+.++++-+... ....++++++
T Consensus 222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4555543 344578999999999999999998874 2246677666644 4555665554
No 451
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.52 E-value=0.068 Score=46.30 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=21.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...|+|+|.+|+|||||...+....
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568999999999999999988654
No 452
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.52 E-value=0.053 Score=46.40 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=19.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHh
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINN 178 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~ 178 (467)
...|+|+|.+|+|||||+..+..
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999853
No 453
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.47 E-value=0.047 Score=46.55 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
+..-|+|+|.+|+|||||+..+...
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CccEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999998653
No 454
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.47 E-value=0.07 Score=45.26 Aligned_cols=23 Identities=35% Similarity=0.431 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHHHHHhcc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
-|+|+|.+|+|||||...+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58899999999999999988654
No 455
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=92.45 E-value=0.07 Score=46.56 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=19.4
Q ss_pred EEEEEccCCCcHHHHHHHHHhc
Q 037625 158 IIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 158 ~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
-|+|+|.+|+|||+|+..+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4789999999999999988764
No 456
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.44 E-value=0.07 Score=45.72 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=21.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..-|+|+|.+|+|||||+..+.+..
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 3468999999999999999988764
No 457
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.44 E-value=0.072 Score=45.32 Aligned_cols=24 Identities=38% Similarity=0.340 Sum_probs=21.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
--|+|+|.+|+|||||...+.+..
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999998764
No 458
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=92.43 E-value=0.073 Score=49.14 Aligned_cols=24 Identities=38% Similarity=0.639 Sum_probs=21.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
.+.|+|+|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999999865
No 459
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.42 E-value=0.073 Score=47.30 Aligned_cols=49 Identities=20% Similarity=0.246 Sum_probs=31.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHH
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDI 208 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 208 (467)
..++.|.|.+|+|||+||.+++.+.. ......++|++... +..++...+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~--~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGA--EEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHH--HHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH--HhcCCCceeecccC--CHHHHHHHH
Confidence 45899999999999999988765421 12223466665543 344554443
No 460
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.40 E-value=0.073 Score=53.18 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=22.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+|.++|++|+||||+|+.++..+
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998876
No 461
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.40 E-value=0.072 Score=45.56 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=21.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...-|+|+|.+|+|||||+..+....
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 34578999999999999999987653
No 462
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.38 E-value=0.073 Score=45.20 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=21.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.-|+|+|.+|+|||||+..+....
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998754
No 463
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.38 E-value=0.1 Score=48.15 Aligned_cols=34 Identities=35% Similarity=0.580 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 144 LEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 144 ~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
++++...+. ..+++|.|++|+|||||.+.+....
T Consensus 160 v~~lf~~l~---geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 160 IEELKEYLK---GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HHHHHHHHS---SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHHHHHHhc---CCeEEEECCCCCcHHHHHHHhcccc
Confidence 455555553 3588999999999999999998765
No 464
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.37 E-value=0.082 Score=46.42 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
...|+|+|.+|+|||||+..+...
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999998765
No 465
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=92.33 E-value=0.15 Score=52.31 Aligned_cols=62 Identities=21% Similarity=0.236 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 037625 142 SQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIG 209 (467)
Q Consensus 142 ~~~~~l~~~L~~~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 209 (467)
...+.+...+. .++..|+|++|+|||+++..+...+.. .....+.++.........+...+.
T Consensus 184 ~Q~~av~~~l~---~~~~li~GppGTGKT~~~~~~i~~l~~---~~~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 184 SQVYAVKTVLQ---RPLSLIQGPPGTGKTVTSATIVYHLAR---QGNGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp HHHHHHHHHHT---CSEEEEECCTTSCHHHHHHHHHHHHHT---SSSCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CCCeEEECCCCCCHHHHHHHHHHHHHH---cCCCeEEEEeCcHHHHHHHHHHHH
Confidence 34444444442 357889999999999988877766521 123455566555555556655554
No 466
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.33 E-value=0.075 Score=44.95 Aligned_cols=24 Identities=29% Similarity=0.126 Sum_probs=20.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.-|+|+|.+|+|||||...+....
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999987653
No 467
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.29 E-value=0.071 Score=45.71 Aligned_cols=24 Identities=25% Similarity=0.265 Sum_probs=19.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
--|+|+|.+|+|||||...+....
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC--
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 458999999999999999987643
No 468
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.28 E-value=0.071 Score=44.80 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHhc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
..|+|+|.+|+|||||...+...
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999865
No 469
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.25 E-value=0.073 Score=45.54 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=20.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
.--|+|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999998765
No 470
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.25 E-value=0.078 Score=44.94 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..|+|+|.+|+|||||+..+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998754
No 471
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.21 E-value=0.078 Score=45.58 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=20.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.-|+|+|.+|+|||||+..+....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999988654
No 472
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.17 E-value=0.068 Score=52.42 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+++|+|+.|+|||||++.++.-.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 44689999999999999999988754
No 473
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.16 E-value=0.17 Score=43.80 Aligned_cols=43 Identities=23% Similarity=0.179 Sum_probs=30.1
Q ss_pred EEEE-EccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHH
Q 037625 158 IIGL-YGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKI 204 (467)
Q Consensus 158 ~i~I-~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 204 (467)
+|+| .+-||+||||++..++..+. ... .++.++.....+....
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la---~~g-~VlliD~D~q~~~~~~ 45 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLA---LQG-ETLLIDGDPNRSATGW 45 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH---TTS-CEEEEEECTTCHHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHH---hcC-CEEEEECCCCCCHHHH
Confidence 4555 57899999999999998882 223 6777777655444433
No 474
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=92.15 E-value=0.15 Score=45.18 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=29.1
Q ss_pred CCcEEEEE-ccCCCcHHHHHHHHHhcccCCCCC-CCeEEEEEeCCC
Q 037625 155 SAGIIGLY-GMGGVGKTTLLTHINNKFLESPTN-FDCVIWVVVSKD 198 (467)
Q Consensus 155 ~~~~i~I~-G~~GiGKTtLa~~v~~~~~~~~~~-f~~~~wv~~~~~ 198 (467)
..++|+|+ +-||+||||+|..++..+ ... -..++.++....
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~l---a~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFAL---SQEPDIHVLAVDISLP 45 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHH---TTSTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHH---HhCcCCCEEEEECCCC
Confidence 34677777 568999999999999888 222 345677776533
No 475
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.15 E-value=0.08 Score=45.08 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=21.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..-|+|+|.+|+|||||...+....
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCC
Confidence 3468999999999999999988743
No 476
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.14 E-value=0.091 Score=47.61 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=21.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...|+|.|.+|+|||||...+....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568999999999999999987653
No 477
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.14 E-value=0.1 Score=52.64 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=22.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+|.|.|++|+||||+|+.+...+
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999886
No 478
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.11 E-value=0.091 Score=49.45 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=23.4
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 154 ESAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 154 ~~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+..+++|+|++|+|||||+..+....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999987654
No 479
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.11 E-value=0.43 Score=53.40 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=22.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
....|+|+|+.|+|||||++.+..-.
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCc
Confidence 44689999999999999999987654
No 480
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.10 E-value=0.082 Score=49.84 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=21.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.+++|+|++|+|||||++.+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 489999999999999999998765
No 481
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.07 E-value=0.08 Score=46.90 Aligned_cols=26 Identities=31% Similarity=0.218 Sum_probs=22.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
....|+|+|.+|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 34578999999999999999998754
No 482
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.06 E-value=0.082 Score=45.96 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=19.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHh
Q 037625 157 GIIGLYGMGGVGKTTLLTHINN 178 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~ 178 (467)
.-|+|+|.+|+|||||...+..
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999999874
No 483
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.05 E-value=0.078 Score=46.03 Aligned_cols=23 Identities=39% Similarity=0.510 Sum_probs=19.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHhc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
--|+|+|.+|+|||||+..+.+.
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999998764
No 484
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=91.99 E-value=0.15 Score=47.51 Aligned_cols=46 Identities=20% Similarity=0.170 Sum_probs=32.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHH
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKI 204 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 204 (467)
..++...|-||+||||+|..++.... ..-..++-++.....+....
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA---~~G~rVLlvD~D~~~~l~~~ 59 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMA---RSGKKTLVISTDPAHSLSDS 59 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEECCSSCCHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHH---HCCCcEEEEeCCCCcCHHHH
Confidence 35778889999999999999988772 22345666666554454443
No 485
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.98 E-value=0.087 Score=44.75 Aligned_cols=24 Identities=38% Similarity=0.333 Sum_probs=20.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.-|+|+|.+|+|||||+..+.+..
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998753
No 486
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.97 E-value=0.098 Score=45.42 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=20.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
--|+|+|.+|+|||||+..+....
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 458899999999999999987753
No 487
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.96 E-value=0.086 Score=45.42 Aligned_cols=24 Identities=29% Similarity=0.337 Sum_probs=21.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.-|+|+|.+|+|||||+..+....
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999988753
No 488
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.95 E-value=0.069 Score=45.40 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=19.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.-|+|+|.+|+|||||+..+....
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999987643
No 489
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.94 E-value=0.078 Score=45.15 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=21.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...|+|+|.+|+|||||...+....
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999987654
No 490
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.89 E-value=0.089 Score=45.13 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=21.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..-|+|+|.+|+|||||+..+.+..
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCC
Confidence 3468999999999999999987653
No 491
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.88 E-value=0.09 Score=45.35 Aligned_cols=25 Identities=36% Similarity=0.359 Sum_probs=21.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..-|+|+|.+|+|||||+..+....
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999999988653
No 492
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.88 E-value=0.077 Score=51.22 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=19.7
Q ss_pred EEEEccCCCcHHHHHHHHHhc
Q 037625 159 IGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 159 i~I~G~~GiGKTtLa~~v~~~ 179 (467)
++|+|+.|+|||||.+.++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 999999999999999999875
No 493
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=91.88 E-value=0.099 Score=45.81 Aligned_cols=45 Identities=13% Similarity=0.117 Sum_probs=31.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQEDIGKKIGLV 215 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 215 (467)
..+|+|.|+.|+||||+++.++..+ .-. ++ + .+++..++...+..
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~l---g~~-----~~------d-~~~~~~~a~~~g~~ 58 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEEL---GIH-----FY------D-DDILKLASEKSAVG 58 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH---TCE-----EE------C-HHHHHHHHHCC---
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHc---CCc-----EE------c-HHHHHHHHHHcCCC
Confidence 4689999999999999999999987 211 11 3 56666676666654
No 494
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.84 E-value=0.091 Score=45.40 Aligned_cols=24 Identities=29% Similarity=0.218 Sum_probs=20.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
--|+|+|.+|+|||||+..+.+..
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999988653
No 495
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=91.80 E-value=0.093 Score=44.96 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=20.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHhcc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
.-|+|+|.+|+|||||+..+....
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 358999999999999999988754
No 496
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=91.75 E-value=0.15 Score=51.98 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=29.9
Q ss_pred CCCcEEEEEccCCCcHHHHHHHHHhcccCCCCCCCeEEEEEeC
Q 037625 154 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVS 196 (467)
Q Consensus 154 ~~~~~i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 196 (467)
+..+++.+.|.||+||||+|..++....+ .-..++.++..
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~---~G~rVLlvd~D 45 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRLAE---QGKRVLLVSTD 45 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEECC
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHHHH---CCCcEEEEECC
Confidence 44678999999999999999998887732 23346666654
No 497
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=91.71 E-value=0.13 Score=44.00 Aligned_cols=26 Identities=12% Similarity=0.199 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 155 SAGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 155 ~~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...+|+|+|++|+||+|+|..+.+..
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 45689999999999999999887754
No 498
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.69 E-value=0.055 Score=45.44 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=9.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHhc
Q 037625 157 GIIGLYGMGGVGKTTLLTHINNK 179 (467)
Q Consensus 157 ~~i~I~G~~GiGKTtLa~~v~~~ 179 (467)
.-|+|+|.+|+|||||+..+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999988754
No 499
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.63 E-value=0.069 Score=45.23 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
...|+|+|.+|+|||||...+....
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999987654
No 500
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.60 E-value=0.09 Score=51.91 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=22.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHhcc
Q 037625 156 AGIIGLYGMGGVGKTTLLTHINNKF 180 (467)
Q Consensus 156 ~~~i~I~G~~GiGKTtLa~~v~~~~ 180 (467)
..+|.++|++|+||||+++.+....
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998876
Done!