BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037626
(99 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 43 AEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCR 95
A D VE C++CL E E + L RC H FHA+C++ WL + TCP+CR
Sbjct: 1 AMDDGVE--CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG-SHSTCPLCR 50
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 39 YQPEAEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRS 96
+ P S+ + +C +C+ +FE ++ R+ C H FHA C+++WL N+ TCP+CR+
Sbjct: 14 FNPNNHQSE-QTLCVVCMCDFESRQLL-RVLPCNHEFHAKCVDKWLKANR-TCPICRA 68
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 49 EEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98
E C IC E+ K DV + L C H FH C+ WL TCPVCR F
Sbjct: 40 EMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQ-KSGTCPVCRCMF 87
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 52 CSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCR 95
C+ICL E+ + V RL C HLFH C+++WL N+ CP+CR
Sbjct: 17 CTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNK-KCPICR 58
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 38 GYQPEAEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCR 95
G + ++ + E+C++CL +F+ D + + C H FH C+ +WL+ + CP+C
Sbjct: 4 GSSGKVKELNLHELCAVCLEDFKPRDELG-ICPCKHAFHRKCLIKWLEVRK-VCPLCN 59
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 52 CSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCR 95
C +C ++ + V +L C HLFH CI WL+ +CPVCR
Sbjct: 18 CPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLE-QHDSCPVCR 59
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 35 KAMGYQPEAEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDC--NQFTCP 92
+ G E+ +VE CS+CL E+ KE V+ C H F CI RW + F CP
Sbjct: 1 GSSGSSGALENLQVEASCSVCL-EYLKEPVI---IECGHNFCKACITRWWEDLERDFPCP 56
Query: 93 VC 94
VC
Sbjct: 57 VC 58
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From
Mus Musculus
Length = 55
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 45 DSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRS 96
S C ICL + VV+ + C HL H C E L + CP+C
Sbjct: 1 GSSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-EGYRCPLCSG 51
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 49 EEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVC 94
++ C ICL + VV+ + C HL H C E L + CP+C
Sbjct: 5 QQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-EGYRCPLC 49
>pdb|1V87|A Chain A, Solution Structure Of The Ring-H2 Finger Domain Of Mouse
Deltex Protein 2
Length = 114
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 64 VVSRLTRCCHLFHADC-IERWLDCNQ---FTCPVCRSFF 98
VV RLT+C H FH C + + + N+ CP C++ +
Sbjct: 54 VVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 46 SKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCR 95
+ V E C ICL E S C H F CI RW+ N TCP+C+
Sbjct: 2 ATVAERCPICL---EDPSNYSMALPCLHAFCYVCITRWIRQNP-TCPLCK 47
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 47 KVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFFL 99
+V + C C E ++ED V C H FH C+ W+ N CP+C+ ++
Sbjct: 24 QVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN-RCPLCQQDWV 75
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 52 CSICLMEFEKEDVVSRLTRCCHLFHADCIERWL--DCNQFTCPVC 94
C IC+ F +E + +L C H C+E+ L N CP C
Sbjct: 18 CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFC 62
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 49 EEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFFL 99
E +C ICL + K + ++ C H F ADCI L CP CR +
Sbjct: 53 ELMCPICL-DMLKNTMTTK--ECLHRFCADCIITALRSGNKECPTCRKKLV 100
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 50 EICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCR 95
++C IC + D ++ C HL C+ W + + CP CR
Sbjct: 339 QLCKICA----ENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCR 380
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 49 EEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCR 95
EE C IC+ + + C H F CI++W D CP+CR
Sbjct: 15 EEECCICM-----DGRADLILPCAHSFCQKCIDKWSD-RHRNCPICR 55
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 49 EEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFFL 99
E +C ICL + K + ++ C H F ADCI L CP CR +
Sbjct: 54 ELMCPICL-DMLKNTMTTK--ECLHRFCADCIITALRSGNKECPTCRKKLV 101
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 50 EICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCR 95
++C IC + D ++ C HL C+ W + CP CR
Sbjct: 335 QLCKICA----ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 50 EICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCR 95
++C IC + D ++ C HL C+ W + CP CR
Sbjct: 335 QLCKICA----ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 50 EICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCR 95
++C IC + D ++ C HL C+ W + CP CR
Sbjct: 333 QLCKIC----AENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 50 EICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCR 95
++C IC + D ++ C HL C+ W + CP CR
Sbjct: 333 QLCKICA----ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 49 EEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFFL 99
E +C ICL + K + ++ C H F ADCI L CP CR +
Sbjct: 34 ELMCPICL-DMLKNTMTTK--ECLHRFCADCIITALRSGNKECPTCRKKLV 81
>pdb|1Z6U|A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
pdb|1Z6U|B Chain B, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
Length = 150
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 69 TRCCHLFHADCIERWLDCNQFTCPVCR 95
T C H DC++R F+CP CR
Sbjct: 94 TECFHNVCKDCLQRSFKAQVFSCPACR 120
>pdb|3CMQ|A Chain A, Crystal Structure Of Human Mitochondrial Phenylalanine
Trna Synthetase
pdb|3HFV|A Chain A, Crystal Structure Of Human Mitochondrial Phenylalanyl-Trna
Synthetase Complexed With M-Tyrosine
pdb|3TEG|A Chain A, Bacterial And Eukaryotic Phenylalanyl-Trna Synthetases
Catalyze Misaminoacylation Of Trnaphe With
3,4-Dihydroxy-L-Phenylalanine (L- Dopa)
pdb|3TUP|A Chain A, Crystal Structure Of Human Mitochondrial Phers Complexed
With Trnaphe In The Active Open State
Length = 415
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 43 AEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCN-QFTCP 92
A + + ++ L+EF+ + ++RL HLF + RW+DC FT P
Sbjct: 189 AHKQETHTMEAVKLVEFDLKQTLTRLM--AHLFGDELEIRWVDCYFPFTHP 237
>pdb|3FL2|A Chain A, Crystal Structure Of The Ring Domain Of The E3
Ubiquitin- Protein Ligase Uhrf1
Length = 124
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 46 SKVEEICS-ICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCR 95
SKVEE IC E + T C H DC++R F+CP CR
Sbjct: 47 SKVEETFQCICCQELVFRPIT---TVCQHNVCKDCLDRSFRAQVFSCPACR 94
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 50 EICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCR 95
++C IC + D ++ C HL C+ W + + CP CR
Sbjct: 27 QLCKICA----ENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCR 68
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 71 CCHLFHADCIERWLDCNQFTCPV 93
C H FH CI RWL Q CP+
Sbjct: 84 CNHAFHFHCISRWLKTRQ-VCPL 105
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 50 EICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCR 95
++C IC + D ++ C HL C+ W + CP CR
Sbjct: 28 QLCKICA----ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 69
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 50 EICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCR 95
++C IC + D ++ C HL C+ W + CP CR
Sbjct: 25 QLCKICA----ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 66
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 71 CCHLFHADCIERWLDCNQFTCPV 93
C H FH CI RWL Q CP+
Sbjct: 75 CNHAFHFHCISRWLKTRQ-VCPL 96
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 71 CCHLFHADCIERWLDCNQFTCPV 93
C H FH CI RWL Q CP+
Sbjct: 73 CNHAFHFHCISRWLKTRQ-VCPL 94
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp
Abasic Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp
Abasic Site Containing Dna-Duplex
Length = 98
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 71 CCHLFHADCIERWLDCNQFTCPV 93
C H FH CI RWL Q CP+
Sbjct: 65 CNHAFHFHCISRWLKTRQ-VCPL 86
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 71 CCHLFHADCIERWLDCNQFTCPV 93
C H FH CI RWL Q CP+
Sbjct: 67 CNHAFHFHCISRWLKTRQ-VCPL 88
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 71 CCHLFHADCIERWLDCNQFTCPV 93
C H FH CI RWL Q CP+
Sbjct: 73 CNHAFHFHCISRWLKTRQ-VCPL 94
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 71 CCHLFHADCIERWLDCNQFTCPVCRS 96
C H F + CI W+ + CP+CR
Sbjct: 71 CAHSFCSYCINEWMK-RKIECPICRK 95
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 71 CCHLFHADCIERWLDCNQFTCPVCRS 96
C H F + CI W+ + CP+CR
Sbjct: 71 CAHSFCSYCINEWMK-RKIECPICRK 95
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 71 CCHLFHADCIERWLDCNQFTCPV 93
C H FH CI RWL Q CP+
Sbjct: 57 CNHAFHFHCISRWLKTRQ-VCPL 78
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 71 CCHLFHADCIERWLDCNQFTCPVCRS 96
C H F + CI W+ + CP+CR
Sbjct: 82 CAHSFCSYCINEWMK-RKIECPICRK 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.334 0.141 0.467
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,584,063
Number of Sequences: 62578
Number of extensions: 84315
Number of successful extensions: 357
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 320
Number of HSP's gapped (non-prelim): 51
length of query: 99
length of database: 14,973,337
effective HSP length: 65
effective length of query: 34
effective length of database: 10,905,767
effective search space: 370796078
effective search space used: 370796078
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 45 (21.9 bits)