BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037626
(99 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SZL4|ATL18_ARATH RING-H2 finger protein ATL18 OS=Arabidopsis thaliana GN=ATL18 PE=2
SV=1
Length = 145
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 64/109 (58%), Gaps = 10/109 (9%)
Query: 1 MISLMYSQSRLFTAAIFFFSCILIPLLETKR----------AIYKAMGYQPEAEDSKVEE 50
MIS+++ +S L TAAI F++C+ IPL K+ Y +G ++ + E
Sbjct: 1 MISMLFPRSPLCTAAIVFYTCVCIPLGRLKKNGGDADAHDDDGYNLVGVMFGDKEKEEEI 60
Query: 51 ICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFFL 99
C ICL+EFE ED V+ L RC HLFH +CIE WL TCP+CRSF L
Sbjct: 61 CCPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLCRSFVL 109
>sp|Q9P7E1|YOF7_SCHPO Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP4H10.07 PE=1 SV=1
Length = 583
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 5 MYSQSRLFTAAIFFFSCILI--PLLETKRAIYKAMGYQPEAEDSKVEEICSICLMEFEKE 62
+++ S + + S I I P + +++ + KA G P S +E C +CL FE
Sbjct: 479 LFTDSPTYEDMLLLNSIIGIEKPPVASQKDLEKAGGVFPF---SGTDERCLVCLSNFELN 535
Query: 63 DVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRS 96
D RL +C H FH +CI++WL +Q +CP+CR+
Sbjct: 536 DECRRLKQCNHFFHRECIDQWLTSSQNSCPLCRT 569
>sp|Q9SUS5|RHA1B_ARATH E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B
PE=2 SV=1
Length = 157
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Query: 46 SKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWL-DCNQFTCPVCRSFFL 99
+ E+ C++CL +F +D + +L +C H+FH C++RW+ DCN+ TCP+CR+ FL
Sbjct: 79 TDPEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDRWIVDCNKITCPICRNRFL 133
>sp|P93823|ATL1_ARATH RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2
SV=1
Length = 381
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 42 EAEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRS 96
E + SK + CS+CL EF++++ + + CCH+FH DCI+ WL N CP+CR+
Sbjct: 124 EEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNA-NCPLCRT 177
>sp|O64763|ATL9_ARATH E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana GN=ATL9
PE=1 SV=1
Length = 378
Score = 60.1 bits (144), Expect = 5e-09, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 52 CSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRS 96
C++CL EFE ++ + + CCH+FHADC++ WL TCP+CR+
Sbjct: 135 CAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLS-EHSTCPLCRA 178
>sp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2
SV=2
Length = 404
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 52 CSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRS 96
CS+CL EFE ++ + + +CCH+FH CI+ WL + TCP+CR+
Sbjct: 144 CSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHT-TCPLCRA 187
>sp|Q9SUS4|RHA1A_ARATH RING-H2 zinc finger protein RHA1a OS=Arabidopsis thaliana GN=RHA1A
PE=2 SV=1
Length = 159
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 46 SKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWL-DCNQFTCPVCRSFFL 99
+ E+ C++CL +FE +D V +L +C H+FH C++RW+ D N+ CPVCR FL
Sbjct: 80 TDPEDCCTVCLSDFESDDKVRQLPKCGHVFHHYCLDRWIVDYNKMKCPVCRHRFL 134
>sp|Q9LY41|ATL4_ARATH E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana GN=ATL4
PE=1 SV=1
Length = 334
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 52 CSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRS 96
C++CL +FE ED + L CCH FHADCI+ WL NQ TCP+CRS
Sbjct: 117 CAVCLSKFEPEDQLRLLPLCCHAFHADCIDIWLVSNQ-TCPLCRS 160
>sp|Q9ZV53|ATL49_ARATH Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana
GN=ATL49 PE=3 SV=1
Length = 423
Score = 59.3 bits (142), Expect = 8e-09, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 52 CSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFFL 99
C +CL EFE ED + L +C H FH +CI+ WL + TCP+CRS L
Sbjct: 126 CPVCLCEFETEDKLRLLPKCSHAFHVECIDTWL-LSHSTCPLCRSNLL 172
>sp|Q9SK92|ATL15_ARATH E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana GN=ATL15
PE=1 SV=1
Length = 381
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 52 CSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRS 96
C +CL EFE ++ + + +CCH+FH CI+ WL +Q TCP+CR+
Sbjct: 118 CPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLR-SQTTCPLCRA 161
>sp|Q940Q4|ATL13_ARATH RING-H2 finger protein ATL13 OS=Arabidopsis thaliana GN=ATL13 PE=2
SV=2
Length = 472
Score = 58.9 bits (141), Expect = 9e-09, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 52 CSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCR 95
C++CL EFE ED + L +C H FH DCI+ WL + TCP+CR
Sbjct: 134 CAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWL-LSHSTCPLCR 176
>sp|Q9FIR0|ATL30_ARATH RING-H2 finger protein ATL30 OS=Arabidopsis thaliana GN=ATL30 PE=2
SV=1
Length = 289
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 37/45 (82%), Gaps = 2/45 (4%)
Query: 52 CSICLMEFEKEDVVSRL-TRCCHLFHADCIERWLDCNQFTCPVCR 95
C+ICL+EFE+E ++ RL T C H+FH +CI++WL+ N+ TCPVCR
Sbjct: 114 CAICLLEFEEEHILLRLLTTCYHVFHQECIDQWLESNK-TCPVCR 157
>sp|Q8H7N9|ATL31_ORYSJ E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp.
japonica GN=Os03g0188200 PE=2 SV=1
Length = 353
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 32 AIYKAMGYQPEAEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTC 91
A+Y + + A+ +E C++CL EF D + L CCH+FH DCI+ WL TC
Sbjct: 115 AVYGDVKARMAAKSGPLE--CAVCLAEFADSDELRVLPACCHVFHPDCIDPWL-AAAVTC 171
Query: 92 PVCRS 96
P+CR+
Sbjct: 172 PLCRA 176
>sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6
PE=1 SV=2
Length = 398
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 47 KVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRS 96
K E C+ICL EFE ++ + L +C H+FH CI+ WL+ + TCPVCR+
Sbjct: 123 KGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAH-VTCPVCRA 171
>sp|Q9C7I1|ATL34_ARATH RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2
SV=1
Length = 327
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/45 (51%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 52 CSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRS 96
C+ICL EFE E+ + + C H FHA CI+ WL ++ TCPVCR+
Sbjct: 128 CAICLNEFEDEETLRLMPPCSHAFHASCIDVWLS-SRSTCPVCRA 171
>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2
SV=3
Length = 323
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/45 (55%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 52 CSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRS 96
C+ICL E E + V L C HLFH DCI+ WL + TCPVCRS
Sbjct: 124 CAICLNELEDHETVRLLPICNHLFHIDCIDTWL-YSHATCPVCRS 167
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 30 KRAIYKAMGYQPEAEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQF 89
KR + G + E E+S +E C+ICL E + V RL C HLFH C+++WL ++
Sbjct: 273 KRRPQDSKGKKDEGEESDTDEKCTICLSMLEDGEDVRRLP-CMHLFHQLCVDQWLAMSK- 330
Query: 90 TCPVCR 95
CP+CR
Sbjct: 331 KCPICR 336
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 30 KRAIYKAMGYQPEAEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQF 89
KR G + E E+S +E C+ICL E + V RL C HLFH C+++WL ++
Sbjct: 272 KRRPQDGKGKKDEGEESDTDEKCTICLSMLEDGEDVRRLP-CMHLFHQLCVDQWLAMSK- 329
Query: 90 TCPVCR 95
CP+CR
Sbjct: 330 KCPICR 335
>sp|Q9M0R4|ATL37_ARATH Putative RING-H2 finger protein ATL37 OS=Arabidopsis thaliana
GN=ATL37 PE=3 SV=1
Length = 357
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 23/45 (51%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 52 CSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRS 96
C+ICL EFE E+ + + C H FHA+CI+ WL ++ TCPVCR+
Sbjct: 120 CAICLCEFEDEEPLRWMPPCSHTFHANCIDEWLS-SRSTCPVCRA 163
>sp|Q5EAE9|ATL43_ARATH RING-H2 finger protein ATL43 OS=Arabidopsis thaliana GN=ATL43 PE=2
SV=2
Length = 407
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 52 CSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCR 95
C++CL FE +V+ L +C H FH +C++ WLD + TCP+CR
Sbjct: 146 CAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHS-TCPLCR 188
>sp|Q8LGA5|ATL31_ARATH E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana GN=ATL31
PE=1 SV=2
Length = 368
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 52 CSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRS 96
C+ICL EFE ++ + L +C H+FH CI WL TCPVCR+
Sbjct: 124 CAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQ-GHVTCPVCRT 167
>sp|Q8GW38|ATL47_ARATH RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2
SV=1
Length = 369
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 52 CSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCR 95
C++CL EF ++D + L C H FH DCI+ WL N TCP+CR
Sbjct: 144 CAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNS-TCPLCR 186
>sp|Q9LF64|ATL52_ARATH RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2
SV=1
Length = 362
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 52 CSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSF 97
CS+CL EFE+ + + L +C H FH CI+ WL + CP+CR+F
Sbjct: 142 CSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHS-NCPLCRAF 186
>sp|Q9FL07|ATL46_ARATH RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2
SV=1
Length = 376
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 52 CSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCR 95
C++CL EF ++D + L C H FH +CI+ WL N TCP+CR
Sbjct: 143 CAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNS-TCPLCR 185
>sp|Q9SRQ8|ATL51_ARATH RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2
SV=2
Length = 356
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 52 CSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFFL 99
CS+CL EF++ + + L +C H FH CI+ WL + CP+CR+F +
Sbjct: 159 CSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHS-NCPLCRAFIV 205
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 39 YQPEAEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCR 95
Y+ + DS++ ++CS+C+ ++ + + +L C H FH CI+RWL N TCPVCR
Sbjct: 601 YEQDGVDSELGKVCSVCISDYVAGNKLRQLP-CLHEFHIHCIDRWLSEN-CTCPVCR 655
>sp|Q8RX29|ATL70_ARATH RING-H2 finger protein ATL70 OS=Arabidopsis thaliana GN=ATL70 PE=2
SV=1
Length = 217
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 42 EAEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFFL 99
EA+ C+ICL +++ + ++ +L C HLFH CI+ WL N TCPVCR+ L
Sbjct: 137 EAKGPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDTWLRLNP-TCPVCRTSPL 193
>sp|Q9LZJ6|ATL5_ARATH RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2
SV=1
Length = 257
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 39 YQPEAEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRS 96
Y + +S +EE CS+CL EFE++D L +C H+FH DCI+ W ++ +CP+CR+
Sbjct: 101 YSVKTHESPLEE-CSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFR-SRSSCPLCRA 156
>sp|Q08CG8|RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1
Length = 448
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 29 TKRAIYKAMGYQPEAEDSKVEE-ICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCN 87
TK I + Y+ E+ + E+ +C +C +FE ++ R+ C H FHA C+++WL N
Sbjct: 372 TKADIEQLPSYRFNLENHQSEQTLCVVCFSDFESRQLL-RVLPCNHEFHAKCVDKWLKTN 430
Query: 88 QFTCPVCRS 96
+ TCP+CR+
Sbjct: 431 R-TCPICRA 438
>sp|Q9FG21|ATL71_ARATH Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana
GN=ATL71 PE=3 SV=1
Length = 197
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 44 EDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFFL 99
++S CSICL +++K D++ L C HLFH +C++ WL + TCPVCR+ L
Sbjct: 121 KESSTTSCCSICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHP-TCPVCRTSPL 175
>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana
GN=ATL12 PE=3 SV=1
Length = 390
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 52 CSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRS 96
CS+CL +FE +++ L +C H FH CI++WL+ TCP+CR+
Sbjct: 124 CSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLE-QHATCPLCRN 167
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 39 YQPEAEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCR 95
Y+ + DS++ +ICS+C+ ++ + + +L C H FH CI+RWL N TCP+CR
Sbjct: 619 YEHNSIDSELGKICSVCISDYVTGNKLRQLP-CMHEFHIHCIDRWLSEN-CTCPICR 673
>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1
Length = 407
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 39 YQPEAEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRS 96
+ P++ S+ + +C +C +FE ++ R+ C H FHA C+++WL N+ TCP+CR+
Sbjct: 343 FNPDSHQSE-QTLCVVCFSDFEVRQLL-RVLPCNHEFHAKCVDKWLKANR-TCPICRA 397
>sp|Q9LSW9|ATL16_ARATH RING-H2 finger protein ATL16 OS=Arabidopsis thaliana GN=ATL16 PE=2
SV=1
Length = 375
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 47 KVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRS 96
K + CS+CL EF+ E+ + + C HLFH DCI+ WL N CP+CR+
Sbjct: 133 KRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQ-NNANCPLCRT 181
>sp|P0C041|ATL53_ARATH Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana
GN=ATL53 PE=3 SV=2
Length = 310
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 52 CSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRS 96
CSICL EF +++ + L +C H FH CI+RWL + CP+CR+
Sbjct: 155 CSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHS-NCPLCRA 198
>sp|O22255|ATL64_ARATH RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2
SV=1
Length = 227
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 52 CSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRS 96
CS+CL EFE+ED L +C H FH DCI+ W ++ TCP+CR+
Sbjct: 108 CSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWFR-SRSTCPLCRA 151
>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4
Length = 515
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 29 TKRAIYKAMGYQPEAEDSKVEE-ICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCN 87
TK I + Y+ + + E+ +C +C+ +FE ++ R+ C H FHA C+++WL N
Sbjct: 439 TKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLL-RVLPCNHEFHAKCVDKWLKAN 497
Query: 88 QFTCPVCRS 96
+ TCP+CR+
Sbjct: 498 R-TCPICRA 505
>sp|Q6NKR1|ATL28_ARATH RING-H2 finger protein ATL28 OS=Arabidopsis thaliana GN=ATL28 PE=2
SV=1
Length = 254
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 52 CSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCR 95
C+ICL EF ED V +T C H FH++CI+ W + ++ TCPVCR
Sbjct: 103 CAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFELHK-TCPVCR 145
>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1
Length = 432
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 39 YQPEAEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRS 96
+ P++ S+ + +C +C +FE ++ R+ C H FH C+++WL N+ TCP+CR+
Sbjct: 368 FNPDSHQSE-QTLCVVCFSDFEARQLL-RVLPCNHEFHTKCVDKWLKANR-TCPICRA 422
>sp|O80927|ATL33_ARATH RING-H2 finger protein ATL33 OS=Arabidopsis thaliana GN=ATL33 PE=2
SV=2
Length = 235
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 25 PLLETKRAIYKAMGYQPEAEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWL 84
P+ ET + + ++ CS+CLM F D + +L+ C H FH CIE WL
Sbjct: 115 PITETTVTSESGGKFHKDTHSKEIGNECSVCLMVFTDSDELRQLSECKHAFHVLCIETWL 174
Query: 85 DCNQFTCPVCRS 96
+ CP+CR+
Sbjct: 175 K-DHPNCPICRT 185
>sp|Q9LQM2|ATL81_ARATH RING-H2 finger protein ATL81 OS=Arabidopsis thaliana GN=ATL81 PE=2
SV=1
Length = 332
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 52 CSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCR 95
CSICL EF +D + ++ C H FH CI+ W + ++ TCPVCR
Sbjct: 154 CSICLTEFMDDDTIRLISTCNHSFHTICIDLWFEGHK-TCPVCR 196
>sp|O49691|ATL29_ARATH RING-H2 finger protein ATL29 OS=Arabidopsis thaliana GN=ATL29 PE=3
SV=1
Length = 289
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 52 CSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCR 95
C+ICL+EF+ + V+ LT C H+FH +CI+ W + ++ TCPVCR
Sbjct: 110 CAICLLEFDGDHVLRLLTTCYHVFHQECIDLWFESHR-TCPVCR 152
>sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1
Length = 518
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 29 TKRAIYKAMGYQPEAEDSKVEE-ICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCN 87
TK I + Y+ + + E+ +C +C+ +FE ++ R+ C H FHA C+++WL N
Sbjct: 442 TKADIEQLPSYRFNPSNHQSEQTLCVVCMCDFESRQLL-RVLPCNHEFHAKCVDKWLKGN 500
Query: 88 QFTCPVCRS 96
+ TCP+CR+
Sbjct: 501 R-TCPICRA 508
>sp|Q9LX93|ATL55_ARATH E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55
PE=1 SV=1
Length = 301
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 52 CSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRS 96
CS+CL EFE+++ + L +C H FH +CI+ WL ++ CP+CR+
Sbjct: 135 CSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHK-NCPLCRA 178
>sp|Q9FHG8|ATL50_ARATH Putative RING-H2 finger protein ATL50 OS=Arabidopsis thaliana
GN=ATL50 PE=3 SV=1
Length = 210
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 13/74 (17%)
Query: 24 IPLLETKRAIYKAM-GYQPEAEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIER 82
+PLL YK M G + + D C++CL EF ED + L +C H FH +CI+
Sbjct: 104 LPLLH-----YKTMIGLRHDLSD------CAVCLREFTAEDELRLLPKCSHAFHVECIDT 152
Query: 83 WLDCNQFTCPVCRS 96
WL N TCP+CR
Sbjct: 153 WLLTNS-TCPLCRD 165
>sp|P0C034|ATL10_ARATH RING-H2 finger protein ATL10 OS=Arabidopsis thaliana GN=ATL10 PE=2
SV=1
Length = 251
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 33 IYKAMGYQPEAEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCP 92
++ + Y PE ++E C ICL +F + + L +C H FH CI++WL TCP
Sbjct: 116 MFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQ-QHLTCP 174
Query: 93 VCRS 96
CR+
Sbjct: 175 KCRN 178
>sp|P87237|YC0C_SCHPO Uncharacterized RING finger protein C4G3.12c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC4G3.12c PE=4 SV=1
Length = 821
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 52 CSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRS 96
C ICL + D+ +L C H FH CI++WL +CP+CR+
Sbjct: 766 CLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLCRA 810
>sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1
Length = 350
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 39 YQPEAEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRS 96
+ P++ S+ + +C +C +FE ++ R+ C H FHA C+++WL N+ TCP+CR+
Sbjct: 286 FNPDSHQSE-QTLCVVCFSDFEVRQLL-RVLPCNHEFHAKCVDKWLKANR-TCPICRA 340
>sp|Q9FGJ6|ATL79_ARATH RING-H2 finger protein ATL79 OS=Arabidopsis thaliana GN=ATL79 PE=2
SV=1
Length = 166
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 14/89 (15%)
Query: 21 CILIPLLETK-------------RAIYKAMGYQPEAEDSKVEEICSICLMEFEKEDVVSR 67
C L P LET+ + Y + E + E C+ICL EFE+ + +
Sbjct: 63 CFLRPTLETEDDHKPDPEAAASSTPTTPTLVYSSDLELAGAEAECAICLSEFEQGESIQV 122
Query: 68 LTRCCHLFHADCIERWLDCNQFTCPVCRS 96
L +C H FH CI +WL + +CP CR+
Sbjct: 123 LEKCQHGFHVKCIHKWLS-TRSSCPTCRT 150
>sp|Q9XF63|ATL3_ARATH RING-H2 finger protein ATL3 OS=Arabidopsis thaliana GN=ATL3 PE=2
SV=1
Length = 324
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 52 CSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFFL 99
CSICL E K D L +C H FH +CI+ W + TCP+CR+ L
Sbjct: 127 CSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHS-TCPICRNTVL 173
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.334 0.141 0.467
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,103,242
Number of Sequences: 539616
Number of extensions: 1129249
Number of successful extensions: 5927
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 411
Number of HSP's that attempted gapping in prelim test: 5501
Number of HSP's gapped (non-prelim): 669
length of query: 99
length of database: 191,569,459
effective HSP length: 68
effective length of query: 31
effective length of database: 154,875,571
effective search space: 4801142701
effective search space used: 4801142701
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (25.8 bits)