Query 037626
Match_columns 99
No_of_seqs 232 out of 1543
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 04:01:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037626.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037626hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iym_A EL5; ring-H2 finger, ub 99.8 2.5E-20 8.6E-25 94.7 3.6 52 47-99 3-54 (55)
2 2ep4_A Ring finger protein 24; 99.8 2.3E-19 8E-24 96.2 5.7 55 42-98 8-62 (74)
3 2kiz_A E3 ubiquitin-protein li 99.8 3.2E-19 1.1E-23 94.5 5.8 54 43-98 8-61 (69)
4 1x4j_A Ring finger protein 38; 99.8 2.4E-19 8.1E-24 96.5 4.7 51 46-98 20-70 (75)
5 2ecl_A Ring-box protein 2; RNF 99.8 2.7E-19 9.1E-24 97.7 4.6 50 48-98 14-74 (81)
6 2ecm_A Ring finger and CHY zin 99.8 4.3E-19 1.5E-23 90.1 4.4 51 47-98 3-53 (55)
7 2ect_A Ring finger protein 126 99.8 4.6E-19 1.6E-23 95.9 4.4 55 42-98 8-62 (78)
8 2l0b_A E3 ubiquitin-protein li 99.8 8.8E-19 3E-23 97.5 5.5 52 45-98 36-87 (91)
9 2ea6_A Ring finger protein 4; 99.7 2E-18 6.9E-23 91.2 4.6 56 42-98 8-66 (69)
10 3ng2_A RNF4, snurf, ring finge 99.7 2.4E-18 8.2E-23 91.4 3.6 53 45-98 6-61 (71)
11 1v87_A Deltex protein 2; ring- 99.7 4.9E-18 1.7E-22 97.9 5.1 51 48-98 24-92 (114)
12 2ecy_A TNF receptor-associated 99.7 9.4E-18 3.2E-22 88.1 5.0 52 43-98 9-60 (66)
13 2djb_A Polycomb group ring fin 99.7 1.6E-17 5.6E-22 88.6 5.7 53 42-98 8-60 (72)
14 3dpl_R Ring-box protein 1; ubi 99.7 8.3E-18 2.8E-22 96.0 4.6 50 48-98 36-99 (106)
15 2d8t_A Dactylidin, ring finger 99.7 6.4E-18 2.2E-22 90.0 3.6 50 44-98 10-59 (71)
16 2yur_A Retinoblastoma-binding 99.7 2.4E-17 8.1E-22 88.4 5.5 53 42-98 8-62 (74)
17 2csy_A Zinc finger protein 183 99.7 2.3E-17 7.8E-22 89.9 5.4 52 42-98 8-59 (81)
18 2ct2_A Tripartite motif protei 99.7 3.1E-17 1.1E-21 90.3 6.0 56 43-98 9-66 (88)
19 1g25_A CDK-activating kinase a 99.7 1.8E-17 6.2E-22 86.8 4.4 50 49-98 3-53 (65)
20 2ysl_A Tripartite motif-contai 99.7 4.4E-17 1.5E-21 86.9 5.0 51 44-98 15-67 (73)
21 2xeu_A Ring finger protein 4; 99.7 2.6E-17 8.9E-22 85.7 3.8 50 48-98 2-54 (64)
22 2d8s_A Cellular modulator of i 99.7 4.4E-17 1.5E-21 88.6 4.8 58 39-98 5-68 (80)
23 1chc_A Equine herpes virus-1 r 99.7 3.8E-17 1.3E-21 86.1 3.8 48 47-98 3-50 (68)
24 1t1h_A Gspef-atpub14, armadill 99.7 5.6E-17 1.9E-21 87.6 4.0 49 46-98 5-53 (78)
25 3lrq_A E3 ubiquitin-protein li 99.7 4E-17 1.4E-21 92.2 3.3 48 47-98 20-68 (100)
26 4ayc_A E3 ubiquitin-protein li 99.7 2.9E-17 1E-21 97.6 2.7 46 48-98 52-97 (138)
27 2egp_A Tripartite motif-contai 99.7 3.3E-17 1.1E-21 88.6 2.4 52 43-98 6-63 (79)
28 3ztg_A E3 ubiquitin-protein li 99.6 2.6E-16 9.1E-21 87.4 5.6 53 42-98 6-60 (92)
29 2ysj_A Tripartite motif-contai 99.6 3.5E-16 1.2E-20 81.3 5.6 48 43-94 14-63 (63)
30 2ecn_A Ring finger protein 141 99.6 2.6E-17 8.9E-22 87.3 1.2 50 43-98 9-58 (70)
31 2ecw_A Tripartite motif-contai 99.6 4.3E-16 1.5E-20 85.1 5.9 51 44-98 14-69 (85)
32 4a0k_B E3 ubiquitin-protein li 99.6 2E-17 6.8E-22 95.7 0.4 50 48-98 47-110 (117)
33 2ecj_A Tripartite motif-contai 99.6 3.1E-16 1.1E-20 80.1 4.7 49 42-94 8-58 (58)
34 1e4u_A Transcriptional repress 99.6 3.5E-16 1.2E-20 84.7 4.4 54 45-98 7-60 (78)
35 3fl2_A E3 ubiquitin-protein li 99.6 2E-16 6.9E-21 92.4 3.5 48 47-98 50-97 (124)
36 3l11_A E3 ubiquitin-protein li 99.6 1.2E-16 4.2E-21 92.2 1.8 52 43-98 9-60 (115)
37 2ecv_A Tripartite motif-contai 99.6 8.2E-16 2.8E-20 83.9 4.9 51 44-98 14-69 (85)
38 4ap4_A E3 ubiquitin ligase RNF 99.6 2.9E-16 9.8E-21 92.1 3.2 51 47-98 5-58 (133)
39 2y43_A E3 ubiquitin-protein li 99.6 5.9E-16 2E-20 87.1 3.3 47 48-98 21-67 (99)
40 2ckl_A Polycomb group ring fin 99.6 1.3E-15 4.3E-20 87.0 3.9 48 47-98 13-60 (108)
41 3hct_A TNF receptor-associated 99.6 1.5E-15 5.2E-20 88.0 4.1 51 44-98 13-63 (118)
42 1z6u_A NP95-like ring finger p 99.6 1.4E-15 4.8E-20 91.5 3.5 47 48-98 77-123 (150)
43 2ct0_A Non-SMC element 1 homol 99.6 3.7E-15 1.3E-19 79.7 4.7 52 44-98 10-62 (74)
44 2ckl_B Ubiquitin ligase protei 99.6 1.5E-15 5.2E-20 92.5 3.4 48 48-98 53-100 (165)
45 1rmd_A RAG1; V(D)J recombinati 99.6 1.9E-15 6.6E-20 87.2 3.4 48 47-98 21-68 (116)
46 1jm7_A BRCA1, breast cancer ty 99.5 3.1E-15 1.1E-19 85.6 2.9 46 49-98 21-68 (112)
47 4ap4_A E3 ubiquitin ligase RNF 99.5 5.6E-15 1.9E-19 86.5 3.3 51 47-98 70-123 (133)
48 2vje_A E3 ubiquitin-protein li 99.5 7E-15 2.4E-19 76.7 3.1 47 47-98 6-55 (64)
49 2vje_B MDM4 protein; proto-onc 99.5 1E-14 3.4E-19 75.9 3.2 50 46-98 4-54 (63)
50 3knv_A TNF receptor-associated 99.5 3.3E-15 1.1E-19 89.1 1.2 50 45-98 27-76 (141)
51 1bor_A Transcription factor PM 99.5 5.6E-15 1.9E-19 75.2 1.2 45 46-98 3-47 (56)
52 2kr4_A Ubiquitin conjugation f 99.5 6E-14 2E-18 77.0 5.3 49 45-98 10-58 (85)
53 2y1n_A E3 ubiquitin-protein li 99.5 3E-14 1E-18 96.5 3.9 45 50-98 333-377 (389)
54 3hcs_A TNF receptor-associated 99.4 7.7E-14 2.6E-18 85.3 4.1 51 44-98 13-63 (170)
55 1wgm_A Ubiquitin conjugation f 99.4 1.5E-13 5.3E-18 77.2 5.0 48 46-98 19-67 (98)
56 2kre_A Ubiquitin conjugation f 99.4 1.2E-13 4E-18 78.0 4.4 48 46-98 26-73 (100)
57 4ic3_A E3 ubiquitin-protein li 99.4 3.1E-14 1.1E-18 76.2 1.2 42 48-98 23-65 (74)
58 2c2l_A CHIP, carboxy terminus 99.4 3.3E-13 1.1E-17 87.5 5.9 52 43-98 202-253 (281)
59 1jm7_B BARD1, BRCA1-associated 99.4 2.5E-14 8.5E-19 82.7 0.5 44 48-98 21-65 (117)
60 2yu4_A E3 SUMO-protein ligase 99.3 8E-13 2.7E-17 73.7 3.8 48 46-97 4-59 (94)
61 2ea5_A Cell growth regulator w 99.3 1.1E-12 3.7E-17 69.1 4.0 46 44-98 10-56 (68)
62 3k1l_B Fancl; UBC, ring, RWD, 99.3 2.5E-13 8.6E-18 90.5 1.0 53 46-98 305-371 (381)
63 2ecg_A Baculoviral IAP repeat- 99.3 5.4E-13 1.8E-17 71.5 1.8 41 49-98 25-66 (75)
64 2f42_A STIP1 homology and U-bo 99.3 2.8E-12 9.4E-17 79.0 4.8 51 44-98 101-151 (179)
65 1wim_A KIAA0161 protein; ring 99.3 2.1E-12 7.3E-17 71.9 3.7 49 48-97 4-61 (94)
66 1vyx_A ORF K3, K3RING; zinc-bi 99.3 6.2E-12 2.1E-16 64.6 4.1 50 46-98 3-57 (60)
67 2yho_A E3 ubiquitin-protein li 99.2 1.2E-12 4E-17 70.9 0.7 42 48-98 17-59 (79)
68 3htk_C E3 SUMO-protein ligase 99.1 3.9E-11 1.3E-15 77.5 3.5 49 47-98 179-230 (267)
69 3t6p_A Baculoviral IAP repeat- 99.1 1.8E-11 6.2E-16 82.1 0.4 41 49-98 295-336 (345)
70 2bay_A PRE-mRNA splicing facto 98.9 3.6E-10 1.2E-14 58.1 2.3 44 50-98 4-48 (61)
71 3vk6_A E3 ubiquitin-protein li 98.9 1.2E-09 3.9E-14 60.8 3.6 45 51-98 3-47 (101)
72 3nw0_A Non-structural maintena 98.6 3.7E-08 1.3E-12 63.1 4.1 47 49-98 180-227 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 97.0 0.00036 1.2E-08 38.6 2.2 35 48-84 2-38 (101)
74 2ko5_A Ring finger protein Z; 96.8 0.00025 8.4E-09 38.9 0.5 42 50-98 29-71 (99)
75 2lri_C Autoimmune regulator; Z 96.7 0.0016 5.5E-08 33.5 2.9 47 46-96 9-58 (66)
76 1we9_A PHD finger family prote 96.4 0.00038 1.3E-08 35.5 -0.6 51 46-96 3-57 (64)
77 1weo_A Cellulose synthase, cat 95.9 0.026 8.8E-07 30.6 5.0 51 48-98 15-68 (93)
78 1wep_A PHF8; structural genomi 95.5 0.02 6.9E-07 30.2 3.7 49 48-97 11-63 (79)
79 2vpb_A Hpygo1, pygopus homolog 95.3 0.015 5.2E-07 29.7 2.7 36 46-81 5-41 (65)
80 3lqh_A Histone-lysine N-methyl 95.2 0.0039 1.3E-07 38.3 0.4 48 50-97 3-63 (183)
81 2l5u_A Chromodomain-helicase-D 94.9 0.013 4.4E-07 29.5 1.8 49 45-97 7-58 (61)
82 2k16_A Transcription initiatio 94.8 0.013 4.3E-07 30.6 1.5 51 45-96 14-67 (75)
83 3v43_A Histone acetyltransfera 94.7 0.053 1.8E-06 30.5 4.2 48 48-95 4-62 (112)
84 1wil_A KIAA1045 protein; ring 94.5 0.057 1.9E-06 29.0 3.6 39 43-83 9-47 (89)
85 2cs3_A Protein C14ORF4, MY039 94.3 0.12 4.3E-06 27.4 4.7 40 46-86 12-52 (93)
86 3u5n_A E3 ubiquitin-protein li 94.3 0.0082 2.8E-07 37.4 0.2 48 45-96 3-53 (207)
87 2kgg_A Histone demethylase jar 94.3 0.011 3.8E-07 28.7 0.6 45 51-95 4-52 (52)
88 2ysm_A Myeloid/lymphoid or mix 94.1 0.013 4.5E-07 32.9 0.7 49 46-95 4-55 (111)
89 1mm2_A MI2-beta; PHD, zinc fin 94.0 0.0086 2.9E-07 30.2 -0.2 49 45-97 5-56 (61)
90 2ri7_A Nucleosome-remodeling f 93.8 0.012 4.2E-07 35.5 0.3 49 47-96 6-58 (174)
91 2lbm_A Transcriptional regulat 93.7 0.14 4.7E-06 30.2 4.6 49 45-97 59-117 (142)
92 3ql9_A Transcriptional regulat 93.2 0.19 6.4E-06 29.1 4.6 50 44-97 52-111 (129)
93 1f62_A Transcription factor WS 93.2 0.047 1.6E-06 26.2 1.8 46 51-97 2-50 (51)
94 3o36_A Transcription intermedi 93.1 0.015 5E-07 35.5 -0.2 45 48-96 3-50 (184)
95 2l43_A N-teminal domain from h 93.1 0.024 8.3E-07 30.7 0.7 52 45-96 21-74 (88)
96 1fp0_A KAP-1 corepressor; PHD 92.7 0.043 1.5E-06 29.8 1.3 51 42-96 18-71 (88)
97 2yql_A PHD finger protein 21A; 92.6 0.0065 2.2E-07 30.0 -1.9 48 45-96 5-55 (56)
98 2kwj_A Zinc finger protein DPF 92.5 0.03 1E-06 31.7 0.5 34 50-83 2-41 (114)
99 2lv9_A Histone-lysine N-methyl 92.5 0.059 2E-06 29.6 1.7 45 50-96 29-75 (98)
100 1z2q_A LM5-1; membrane protein 92.4 0.092 3.1E-06 28.0 2.4 36 48-83 20-55 (84)
101 2yw8_A RUN and FYVE domain-con 92.4 0.083 2.8E-06 28.0 2.1 34 49-82 19-52 (82)
102 2yt5_A Metal-response element- 92.3 0.063 2.2E-06 27.2 1.6 51 46-96 3-60 (66)
103 1wfk_A Zinc finger, FYVE domai 92.3 0.11 3.8E-06 28.0 2.6 36 47-82 7-42 (88)
104 3o70_A PHD finger protein 13; 92.2 0.015 5.2E-07 30.0 -0.9 51 44-96 14-66 (68)
105 3v43_A Histone acetyltransfera 92.2 0.03 1E-06 31.5 0.2 46 51-96 63-111 (112)
106 1joc_A EEA1, early endosomal a 92.0 0.1 3.5E-06 30.0 2.4 35 49-83 69-103 (125)
107 3t7l_A Zinc finger FYVE domain 91.9 0.19 6.4E-06 27.2 3.2 36 48-83 19-54 (90)
108 1vfy_A Phosphatidylinositol-3- 91.8 0.1 3.6E-06 27.0 2.1 33 50-82 12-44 (73)
109 2ku3_A Bromodomain-containing 91.7 0.23 8E-06 25.6 3.3 51 45-95 12-64 (71)
110 1z60_A TFIIH basal transcripti 91.6 0.12 4.1E-06 25.9 2.1 42 51-94 17-58 (59)
111 3m62_A Ubiquitin conjugation f 91.4 0.28 9.4E-06 37.2 4.6 49 45-98 887-936 (968)
112 1x4u_A Zinc finger, FYVE domai 91.3 0.12 4E-06 27.6 2.0 34 49-82 14-47 (84)
113 1wem_A Death associated transc 91.2 0.09 3.1E-06 27.4 1.4 45 50-96 17-69 (76)
114 1wen_A Inhibitor of growth fam 91.1 0.16 5.6E-06 26.2 2.4 48 45-97 12-65 (71)
115 1y02_A CARP2, FYVE-ring finger 90.9 0.093 3.2E-06 30.0 1.4 46 48-94 18-63 (120)
116 1zbd_B Rabphilin-3A; G protein 90.5 0.12 4.1E-06 30.1 1.7 35 47-81 53-88 (134)
117 2xb1_A Pygopus homolog 2, B-ce 90.2 0.15 5.3E-06 28.3 1.9 47 50-96 4-60 (105)
118 1weu_A Inhibitor of growth fam 89.6 0.2 6.9E-06 27.2 2.0 45 48-97 35-85 (91)
119 1x62_A C-terminal LIM domain p 89.3 0.38 1.3E-05 24.9 2.9 29 47-79 13-41 (79)
120 1wee_A PHD finger family prote 89.2 0.24 8.3E-06 25.5 2.1 51 45-96 12-65 (72)
121 1dvp_A HRS, hepatocyte growth 88.7 0.17 5.9E-06 31.6 1.5 34 49-82 161-194 (220)
122 2dj7_A Actin-binding LIM prote 88.5 0.52 1.8E-05 24.5 3.1 40 46-97 12-51 (80)
123 3asl_A E3 ubiquitin-protein li 87.9 0.1 3.5E-06 26.9 0.1 46 51-97 20-69 (70)
124 3zyq_A Hepatocyte growth facto 87.8 0.5 1.7E-05 29.7 3.2 35 49-83 164-198 (226)
125 2cor_A Pinch protein; LIM doma 87.6 0.78 2.7E-05 23.7 3.5 38 48-98 14-51 (79)
126 2e6s_A E3 ubiquitin-protein li 87.6 0.11 3.8E-06 27.3 0.1 45 51-96 28-76 (77)
127 2co8_A NEDD9 interacting prote 87.3 0.84 2.9E-05 23.8 3.5 31 46-79 12-42 (82)
128 3c6w_A P28ING5, inhibitor of g 86.8 0.12 4.2E-06 25.7 -0.0 45 47-96 7-57 (59)
129 2vnf_A ING 4, P29ING4, inhibit 86.5 0.12 4.1E-06 25.8 -0.2 45 47-96 8-58 (60)
130 2d8y_A Eplin protein; LIM doma 86.3 1.3 4.5E-05 23.4 4.0 29 48-79 14-42 (91)
131 2ro1_A Transcription intermedi 86.1 0.1 3.5E-06 32.0 -0.7 44 49-96 2-48 (189)
132 4gne_A Histone-lysine N-methyl 85.9 0.44 1.5E-05 26.6 2.0 46 44-95 10-60 (107)
133 3mpx_A FYVE, rhogef and PH dom 85.8 0.15 5.1E-06 34.7 0.0 48 49-96 375-428 (434)
134 2e6r_A Jumonji/ARID domain-con 85.8 0.34 1.2E-05 26.2 1.5 54 42-96 9-65 (92)
135 1xwh_A Autoimmune regulator; P 85.3 0.35 1.2E-05 24.4 1.3 47 46-96 5-54 (66)
136 1x64_A Alpha-actinin-2 associa 85.0 1.4 4.7E-05 23.2 3.6 38 47-97 23-60 (89)
137 1wev_A Riken cDNA 1110020M19; 84.9 0.23 7.8E-06 26.7 0.4 48 48-95 15-70 (88)
138 2zet_C Melanophilin; complex, 84.3 0.77 2.6E-05 27.3 2.6 33 48-80 67-100 (153)
139 2puy_A PHD finger protein 21A; 84.1 0.46 1.6E-05 23.5 1.4 46 47-96 3-51 (60)
140 2cu8_A Cysteine-rich protein 2 84.1 1 3.4E-05 22.9 2.8 28 49-79 9-36 (76)
141 2o35_A Hypothetical protein DU 84.0 0.5 1.7E-05 26.1 1.5 11 75-85 43-53 (105)
142 3kqi_A GRC5, PHD finger protei 83.8 1.2 4.2E-05 22.9 3.0 45 52-96 12-60 (75)
143 3i2d_A E3 SUMO-protein ligase 83.8 1.8 6.2E-05 29.4 4.5 47 49-98 249-298 (371)
144 3fyb_A Protein of unknown func 83.7 0.52 1.8E-05 26.0 1.5 11 75-85 42-52 (104)
145 2g6q_A Inhibitor of growth pro 83.6 0.23 7.7E-06 25.0 0.1 45 47-96 9-59 (62)
146 1iml_A CRIP, cysteine rich int 83.5 0.51 1.8E-05 24.1 1.5 40 51-96 29-69 (76)
147 2gmg_A Hypothetical protein PF 83.1 0.18 6.2E-06 28.1 -0.4 25 68-98 70-94 (105)
148 1g47_A Pinch protein; LIM doma 82.7 1.2 4.1E-05 22.6 2.7 29 49-79 11-39 (77)
149 2d8z_A Four and A half LIM dom 82.4 1.4 4.9E-05 21.9 2.9 10 51-60 7-16 (70)
150 4fo9_A E3 SUMO-protein ligase 82.2 2.3 7.8E-05 28.8 4.5 47 49-98 215-264 (360)
151 3a1b_A DNA (cytosine-5)-methyl 82.2 1.6 5.5E-05 26.1 3.4 36 46-85 76-113 (159)
152 1wyh_A SLIM 2, skeletal muscle 81.3 1.8 6E-05 21.6 3.0 27 51-79 7-33 (72)
153 1nyp_A Pinch protein; LIM doma 80.8 1.7 5.7E-05 21.4 2.8 26 50-79 6-31 (66)
154 3mjh_B Early endosome antigen 80.8 0.2 6.9E-06 22.2 -0.7 17 48-64 4-20 (34)
155 3shb_A E3 ubiquitin-protein li 80.8 0.21 7.2E-06 26.3 -0.7 45 51-96 28-76 (77)
156 2dar_A PDZ and LIM domain prot 80.5 1.2 4.1E-05 23.5 2.3 27 49-79 25-51 (90)
157 3o7a_A PHD finger protein 13 v 80.3 0.16 5.5E-06 24.5 -1.2 42 54-96 8-51 (52)
158 1zfo_A LAsp-1; LIM domain, zin 80.2 0.86 2.9E-05 19.4 1.3 27 50-79 4-30 (31)
159 2jne_A Hypothetical protein YF 79.9 0.7 2.4E-05 25.4 1.2 41 48-98 31-71 (101)
160 2d8v_A Zinc finger FYVE domain 79.7 1.1 3.8E-05 22.8 1.8 32 47-83 6-38 (67)
161 3ask_A E3 ubiquitin-protein li 79.0 0.38 1.3E-05 30.5 -0.1 46 51-97 176-225 (226)
162 1wd2_A Ariadne-1 protein homol 78.8 0.11 3.8E-06 26.0 -2.1 37 50-86 7-47 (60)
163 1x63_A Skeletal muscle LIM-pro 78.7 1.8 6.3E-05 22.2 2.6 28 50-79 16-43 (82)
164 2d8x_A Protein pinch; LIM doma 77.7 1.2 4.3E-05 22.1 1.7 10 51-60 7-16 (70)
165 1x4k_A Skeletal muscle LIM-pro 77.6 1.9 6.5E-05 21.5 2.4 27 51-79 7-33 (72)
166 1x61_A Thyroid receptor intera 77.6 2.4 8.3E-05 21.1 2.8 32 51-85 35-66 (72)
167 1wig_A KIAA1808 protein; LIM d 77.4 2.3 7.8E-05 21.5 2.7 10 73-82 53-62 (73)
168 1wew_A DNA-binding family prot 76.2 5.1 0.00017 20.7 3.9 47 48-96 15-71 (78)
169 1x4l_A Skeletal muscle LIM-pro 75.7 2.2 7.6E-05 21.3 2.4 28 50-79 6-35 (72)
170 2pv0_B DNA (cytosine-5)-methyl 75.2 2.5 8.5E-05 28.9 3.0 36 46-85 90-127 (386)
171 2cur_A Skeletal muscle LIM-pro 75.0 1.4 4.9E-05 21.8 1.5 12 72-83 51-62 (69)
172 1x68_A FHL5 protein; four-and- 74.9 1.7 5.9E-05 22.0 1.8 28 50-79 6-35 (76)
173 2jrp_A Putative cytoplasmic pr 73.9 1.6 5.3E-05 23.2 1.5 13 50-62 3-15 (81)
174 2jmo_A Parkin; IBR, E3 ligase, 73.9 0.18 6E-06 26.6 -2.3 35 49-83 25-68 (80)
175 3f6q_B LIM and senescent cell 73.3 4.2 0.00014 20.0 3.0 30 49-80 11-40 (72)
176 1x6a_A LIMK-2, LIM domain kina 73.2 2.2 7.5E-05 21.8 2.0 10 51-60 17-26 (81)
177 1a7i_A QCRP2 (LIM1); LIM domai 71.6 0.95 3.3E-05 23.3 0.3 14 50-63 8-21 (81)
178 2l4z_A DNA endonuclease RBBP8, 71.0 4 0.00014 23.0 2.9 37 49-97 61-97 (123)
179 2cuq_A Four and A half LIM dom 70.2 2.7 9.3E-05 21.4 1.9 26 50-79 16-41 (80)
180 2dlo_A Thyroid receptor-intera 69.1 2 6.7E-05 22.1 1.2 26 50-79 16-41 (81)
181 1v6g_A Actin binding LIM prote 68.4 2.2 7.5E-05 21.9 1.3 26 50-79 16-41 (81)
182 2a20_A Regulating synaptic mem 67.1 4.2 0.00015 20.2 2.1 39 44-83 4-43 (62)
183 2l3k_A Rhombotin-2, linker, LI 66.9 2.7 9.3E-05 23.5 1.6 33 51-85 38-70 (123)
184 2csz_A Synaptotagmin-like prot 65.7 3.7 0.00013 21.5 1.8 35 46-80 22-57 (76)
185 1x3h_A Leupaxin; paxillin fami 65.6 2.6 8.9E-05 21.4 1.2 26 50-79 16-41 (80)
186 2jvx_A NF-kappa-B essential mo 64.8 1.6 5.6E-05 18.3 0.3 8 90-97 5-12 (28)
187 2ct7_A Ring finger protein 31; 64.4 0.38 1.3E-05 25.6 -2.3 32 52-83 28-61 (86)
188 2kpi_A Uncharacterized protein 62.9 3.3 0.00011 20.2 1.2 27 49-75 10-38 (56)
189 2kdx_A HYPA, hydrogenase/ureas 62.9 4.7 0.00016 22.6 2.0 24 67-97 75-99 (119)
190 1m3v_A FLIN4, fusion of the LI 62.4 6.4 0.00022 21.9 2.6 45 51-98 34-79 (122)
191 2cup_A Skeletal muscle LIM-pro 61.1 8.4 0.00029 20.4 2.8 42 51-98 35-76 (101)
192 1j2o_A FLIN2, fusion of rhombo 60.7 8.1 0.00028 21.2 2.8 14 72-85 52-65 (114)
193 2jmi_A Protein YNG1, ING1 homo 60.2 2.7 9.2E-05 22.7 0.7 47 44-95 21-74 (90)
194 2egq_A FHL1 protein; LIM domai 58.5 4.5 0.00016 20.3 1.4 38 50-98 16-56 (77)
195 3kv5_D JMJC domain-containing 58.1 8.5 0.00029 27.1 3.0 46 50-96 38-87 (488)
196 1rut_X Flinc4, fusion protein 56.9 9.4 0.00032 22.9 2.8 27 51-79 71-97 (188)
197 2lcq_A Putative toxin VAPC6; P 56.8 3.3 0.00011 24.4 0.7 24 67-97 134-157 (165)
198 2fiy_A Protein FDHE homolog; F 56.7 2.8 9.6E-05 27.7 0.4 48 47-96 180-230 (309)
199 2ehe_A Four and A half LIM dom 56.0 8 0.00027 19.7 2.1 28 50-79 16-43 (82)
200 2xjy_A Rhombotin-2; oncoprotei 55.8 10 0.00035 21.1 2.7 9 52-60 69-77 (131)
201 3vhs_A ATPase wrnip1; zinc fin 54.3 4 0.00014 16.7 0.5 7 90-96 8-14 (29)
202 3kv4_A PHD finger protein 8; e 54.0 1.8 6.3E-05 30.1 -0.8 46 51-96 6-55 (447)
203 1b8t_A Protein (CRP1); LIM dom 53.2 8.7 0.0003 23.1 2.2 27 50-79 116-142 (192)
204 2iyb_E Testin, TESS, TES; LIM 52.4 6 0.0002 19.3 1.2 27 51-79 4-32 (65)
205 2rgt_A Fusion of LIM/homeobox 51.8 12 0.00041 22.0 2.6 41 51-98 35-75 (169)
206 1l8d_A DNA double-strand break 49.7 3.8 0.00013 22.5 0.2 7 50-56 48-54 (112)
207 1twf_L ABC10-alpha, DNA-direct 48.1 11 0.00037 19.3 1.7 10 49-58 28-37 (70)
208 2rsd_A E3 SUMO-protein ligase 47.9 9 0.00031 19.1 1.4 46 49-96 10-64 (68)
209 2xqn_T Testin, TESS; metal-bin 46.8 17 0.00058 20.0 2.7 42 51-98 32-73 (126)
210 2jtn_A LIM domain-binding prot 44.8 13 0.00045 22.1 2.1 14 49-62 60-73 (182)
211 3c5k_A HD6, histone deacetylas 42.9 29 0.00098 19.2 3.1 25 49-77 24-48 (109)
212 2pk7_A Uncharacterized protein 42.6 14 0.00046 18.8 1.6 26 50-75 9-36 (69)
213 4b6d_A RAC GTPase-activating p 41.1 25 0.00084 17.2 2.4 33 49-81 19-51 (61)
214 2lq6_A Bromodomain-containing 36.5 33 0.0011 18.0 2.6 33 49-83 17-51 (87)
215 4bbq_A Lysine-specific demethy 35.9 19 0.00066 19.7 1.7 46 51-96 61-113 (117)
216 2rdd_B UPF0092 membrane protei 35.5 32 0.0011 15.0 3.5 6 19-24 16-21 (37)
217 2jny_A Uncharacterized BCR; st 34.4 15 0.0005 18.6 0.9 26 50-75 11-38 (67)
218 6rxn_A Rubredoxin; electron tr 34.3 14 0.00049 17.2 0.8 7 90-96 32-38 (46)
219 1loi_A Cyclic 3',5'-AMP specif 34.0 1.4 4.8E-05 17.5 -2.3 10 75-84 7-16 (26)
220 1pft_A TFIIB, PFTFIIBN; N-term 33.8 39 0.0013 15.5 2.6 28 50-77 6-36 (50)
221 2vrw_B P95VAV, VAV1, proto-onc 33.6 36 0.0012 22.8 3.0 35 48-82 356-391 (406)
222 1yuz_A Nigerythrin; rubrythrin 33.0 32 0.0011 21.1 2.5 8 90-97 188-195 (202)
223 3vth_A Hydrogenase maturation 31.9 30 0.001 25.8 2.5 48 48-95 110-190 (761)
224 2jr6_A UPF0434 protein NMA0874 31.8 17 0.00057 18.4 0.9 12 49-60 8-19 (68)
225 2hf1_A Tetraacyldisaccharide-1 31.2 18 0.0006 18.3 0.9 11 50-60 9-19 (68)
226 2ku7_A MLL1 PHD3-CYP33 RRM chi 30.9 11 0.00037 20.9 0.1 27 70-96 7-43 (140)
227 1ard_A Yeast transcription fac 30.4 27 0.00092 12.6 1.3 8 90-97 4-11 (29)
228 2m0e_A Zinc finger and BTB dom 29.1 28 0.00096 12.4 1.4 8 90-97 4-11 (29)
229 4f4l_A ION transport protein; 28.8 62 0.0021 17.6 3.0 24 4-27 71-94 (112)
230 4rxn_A Rubredoxin; electron tr 28.0 21 0.00071 17.2 0.8 7 90-96 38-44 (54)
231 1e8j_A Rubredoxin; iron-sulfur 27.9 23 0.00077 16.9 0.9 7 90-96 38-44 (52)
232 3bbo_3 Ribosomal protein L33; 27.9 24 0.00082 17.8 1.1 9 90-98 51-59 (66)
233 2k0a_A PRE-mRNA-splicing facto 27.6 12 0.00042 20.7 -0.1 20 48-67 28-47 (109)
234 1r79_A Diacylglycerol kinase, 27.3 58 0.002 17.1 2.6 35 49-83 38-74 (84)
235 1wvk_A AT2G23090/F21P24.15; st 27.2 32 0.0011 18.3 1.5 18 43-60 39-56 (86)
236 2v3b_B Rubredoxin 2, rubredoxi 27.0 23 0.00078 17.1 0.9 7 90-96 38-44 (55)
237 1znf_A 31ST zinc finger from X 26.6 30 0.001 12.3 1.1 8 90-97 3-10 (27)
238 2zjr_1 50S ribosomal protein L 26.6 17 0.00058 17.6 0.3 9 90-98 40-48 (55)
239 2akl_A PHNA-like protein PA012 26.4 21 0.00071 20.7 0.7 26 50-75 28-54 (138)
240 1yk4_A Rubredoxin, RD; electro 26.3 23 0.00079 16.8 0.8 7 90-96 37-43 (52)
241 2js4_A UPF0434 protein BB2007; 25.9 24 0.00083 17.9 0.9 27 49-75 8-36 (70)
242 1p7a_A BF3, BKLF, kruppel-like 25.9 31 0.0011 13.6 1.2 9 89-97 12-20 (37)
243 2xzm_6 RPS27E; ribosome, trans 25.7 40 0.0014 17.7 1.7 39 38-76 21-62 (81)
244 2ftc_P Mitochondrial ribosomal 25.3 19 0.00066 17.1 0.4 9 90-98 38-46 (52)
245 1klr_A Zinc finger Y-chromosom 23.9 38 0.0013 12.2 1.4 8 90-97 4-11 (30)
246 2g45_A Ubiquitin carboxyl-term 23.3 1E+02 0.0035 17.5 3.3 24 49-76 34-57 (129)
247 2f9i_B Acetyl-coenzyme A carbo 23.2 48 0.0016 21.5 2.1 25 68-96 33-57 (285)
248 2i5o_A DNA polymerase ETA; zin 23.1 20 0.00067 16.1 0.2 8 90-97 11-18 (39)
249 2k21_A Potassium voltage-gated 22.9 1E+02 0.0035 17.7 3.2 13 20-32 68-80 (138)
250 2lvu_A Zinc finger and BTB dom 28.4 18 0.00061 13.0 0.0 7 90-96 4-10 (26)
251 1paa_A Yeast transcription fac 22.3 42 0.0014 12.1 1.4 8 90-97 4-11 (30)
252 2elr_A Zinc finger protein 406 22.3 42 0.0014 13.0 1.2 8 90-97 11-18 (36)
253 2eqe_A Tumor necrosis factor, 22.2 18 0.00063 16.8 -0.0 16 47-62 30-45 (48)
254 1dx8_A Rubredoxin; electron tr 22.1 30 0.001 17.5 0.8 7 90-96 42-48 (70)
255 1wii_A Hypothetical UPF0222 pr 21.4 41 0.0014 17.8 1.3 6 90-95 25-30 (85)
256 1x4i_A Inhibitor of growth pro 21.2 91 0.0031 15.5 2.7 45 49-96 6-54 (70)
257 3mkr_B Coatomer subunit alpha; 20.6 2E+02 0.0067 19.2 4.7 39 50-95 263-301 (320)
258 3arc_T Photosystem II reaction 20.3 67 0.0023 13.7 3.0 23 1-23 1-23 (32)
No 1
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.80 E-value=2.5e-20 Score=94.72 Aligned_cols=52 Identities=38% Similarity=0.876 Sum_probs=44.3
Q ss_pred cccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCCC
Q 037626 47 KVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFFL 99 (99)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~~ 99 (99)
+++.+|+||++++.+++....++.|||.||.+|+.+|++++ .+||+||++++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~-~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH-STCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC-CSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcC-CcCcCCCCEeE
Confidence 34567999999999887776776699999999999999854 49999999874
No 2
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.3e-19 Score=96.22 Aligned_cols=55 Identities=29% Similarity=0.870 Sum_probs=46.1
Q ss_pred CCCCCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 42 EAEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 42 ~~~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
...+...+..|+||++.+.+++.+..+ +|||.||..|+.+|++.+. +||+||+++
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~~~~-~CP~Cr~~~ 62 (74)
T 2ep4_A 8 KVKELNLHELCAVCLEDFKPRDELGIC-PCKHAFHRKCLIKWLEVRK-VCPLCNMPV 62 (74)
T ss_dssp CCCCCCCSCBCSSSCCBCCSSSCEEEE-TTTEEEEHHHHHHHHHHCS-BCTTTCCBC
T ss_pred ccccCCCCCCCcCCCcccCCCCcEEEc-CCCCEecHHHHHHHHHcCC-cCCCcCccc
Confidence 334455667899999999988877666 4999999999999999665 999999976
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=3.2e-19 Score=94.48 Aligned_cols=54 Identities=43% Similarity=0.966 Sum_probs=44.5
Q ss_pred CCCCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 43 AEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 43 ~~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
..+...+..|+||++.+..++.+..+ +|||.||..|+.+|++.+. +||+||+++
T Consensus 8 ~~~~~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~~~-~CP~Cr~~~ 61 (69)
T 2kiz_A 8 GTEEDTEEKCTICLSILEEGEDVRRL-PCMHLFHQVCVDQWLITNK-KCPICRVDI 61 (69)
T ss_dssp CCSTTCCCSBTTTTBCCCSSSCEEEC-TTSCEEEHHHHHHHHHHCS-BCTTTCSBS
T ss_pred cCcCCCCCCCeeCCccccCCCcEEEe-CCCCHHHHHHHHHHHHcCC-CCcCcCccc
Confidence 34455567899999999877776556 5999999999999999665 899999876
No 4
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.4e-19 Score=96.48 Aligned_cols=51 Identities=37% Similarity=1.032 Sum_probs=44.1
Q ss_pred CcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 46 SKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 46 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
..++..|+||++++.+++.++.++ |||.||..|+.+|++.+. +||+||+++
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~-~CP~Cr~~~ 70 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANR-TCPICRADS 70 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCS-SCTTTCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCC-cCcCcCCcC
Confidence 445668999999999988876775 999999999999998665 999999976
No 5
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.7e-19 Score=97.73 Aligned_cols=50 Identities=32% Similarity=0.793 Sum_probs=40.8
Q ss_pred cccccccccccccc-----------CCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 48 VEEICSICLMEFEK-----------EDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 48 ~~~~C~IC~~~~~~-----------~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
+++.|+||++++.+ ++.++.+++|||.||.+||++|+++++ +||+||+++
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~~ 74 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN-RCPLCQQDW 74 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC-BCTTTCCBC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC-CCCCcCCCc
Confidence 45678888888854 344566768999999999999999665 999999986
No 6
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.77 E-value=4.3e-19 Score=90.08 Aligned_cols=51 Identities=31% Similarity=0.705 Sum_probs=42.2
Q ss_pred cccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 47 KVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
..+..|+||++++.+++.....++|||.||.+|+.+|++.+ .+||+||+++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~ 53 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPS 53 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSS
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcC
Confidence 34567999999997755544566799999999999999966 4999999976
No 7
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.76 E-value=4.6e-19 Score=95.93 Aligned_cols=55 Identities=35% Similarity=0.797 Sum_probs=45.3
Q ss_pred CCCCCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 42 EAEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 42 ~~~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
.......+..|+||++.+.+++.+..+ +|||.||..|+.+|++.+ .+||+||+++
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~ 62 (78)
T 2ect_A 8 TEEHVGSGLECPVCKEDYALGESVRQL-PCNHLFHDSCIVPWLEQH-DSCPVCRKSL 62 (78)
T ss_dssp CCTTSSSSCCCTTTTSCCCTTSCEEEC-TTSCEEETTTTHHHHTTT-CSCTTTCCCC
T ss_pred CcccCCCCCCCeeCCccccCCCCEEEe-CCCCeecHHHHHHHHHcC-CcCcCcCCcc
Confidence 344455667899999999988777556 599999999999999855 4999999876
No 8
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.76 E-value=8.8e-19 Score=97.54 Aligned_cols=52 Identities=44% Similarity=0.968 Sum_probs=44.3
Q ss_pred CCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 45 DSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 45 ~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
....+..|+||++.+.+++.+..++ |||.||..|+..|++.+. +||+||+++
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~-~CP~Cr~~~ 87 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSG-TCPVCRCMF 87 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTC-BCTTTCCBS
T ss_pred ccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCC-cCcCcCccC
Confidence 3455678999999999888776775 999999999999998554 999999876
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2e-18 Score=91.16 Aligned_cols=56 Identities=25% Similarity=0.552 Sum_probs=43.4
Q ss_pred CCCCCcccccccccccccccC---CeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 42 EAEDSKVEEICSICLMEFEKE---DVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 42 ~~~~~~~~~~C~IC~~~~~~~---~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
......++..|+||++.+.++ ......++|||.||..|+.+|++.+. +||+||+++
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~ 66 (69)
T 2ea6_A 8 TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKI 66 (69)
T ss_dssp CCCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCS-SCTTTCCCC
T ss_pred cccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCC-CCCCCCCcc
Confidence 344455667899999999765 22224457999999999999998654 899999876
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.73 E-value=2.4e-18 Score=91.43 Aligned_cols=53 Identities=26% Similarity=0.598 Sum_probs=41.9
Q ss_pred CCcccccccccccccccC---CeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 45 DSKVEEICSICLMEFEKE---DVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 45 ~~~~~~~C~IC~~~~~~~---~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
..+++..|+||++.+.++ ......++|||.||..|+.+|++.+. +||+||+++
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~ 61 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKI 61 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCS-BCTTTCCBC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCC-CCCCCCCcc
Confidence 344567899999999764 23334557999999999999998665 999999875
No 11
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.72 E-value=4.9e-18 Score=97.85 Aligned_cols=51 Identities=35% Similarity=0.799 Sum_probs=40.0
Q ss_pred ccccccccccccccCC--------------eeeEecCCCCcccHHHHHHHHhc----CCCcCccCCCCC
Q 037626 48 VEEICSICLMEFEKED--------------VVSRLTRCCHLFHADCIERWLDC----NQFTCPVCRSFF 98 (99)
Q Consensus 48 ~~~~C~IC~~~~~~~~--------------~~~~l~~C~H~fh~~Ci~~w~~~----~~~~CP~CR~~~ 98 (99)
.+..|+||++++..+. .+..+++|||.||..||..|+.. .+.+||+||+.+
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCcc
Confidence 3458999999996643 33446689999999999999952 345899999875
No 12
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=9.4e-18 Score=88.12 Aligned_cols=52 Identities=19% Similarity=0.482 Sum_probs=42.2
Q ss_pred CCCCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 43 AEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 43 ~~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
.....++..|+||++.+.++ ..++|||.||..|+.+|++.++.+||+||+++
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCSP----KQTECGHRFCESCMAALLSSSSPKCTACQESI 60 (66)
T ss_dssp CCSCCCCEECTTTCCEESSC----CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCC
T ss_pred hhcCCcCCCCCCCChHhcCe----eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCC
Confidence 34445567899999999877 33579999999999999964555899999875
No 13
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.6e-17 Score=88.59 Aligned_cols=53 Identities=26% Similarity=0.540 Sum_probs=42.6
Q ss_pred CCCCCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 42 EAEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 42 ~~~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
+..+.+++..|+||++.+.++ ..+++|||.||..|+.+|++.+ .+||+||+++
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~ 60 (72)
T 2djb_A 8 NLSELTPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYS-NRCPKCNIVV 60 (72)
T ss_dssp CCCCCCGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHC-SSCTTTCCCC
T ss_pred hHhhcCCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcC-CcCCCcCccc
Confidence 444556677899999999876 2334799999999999999864 4899999875
No 14
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.71 E-value=8.3e-18 Score=95.95 Aligned_cols=50 Identities=30% Similarity=0.660 Sum_probs=39.9
Q ss_pred ccccccccccccccC--------------CeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 48 VEEICSICLMEFEKE--------------DVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 48 ~~~~C~IC~~~~~~~--------------~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
+++.|+||++.+..+ +....+++|||.||..||.+|+.++ .+||+||+++
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC-SBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC-CcCcCCCCcc
Confidence 456799999998754 1123455799999999999999954 4999999975
No 15
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=6.4e-18 Score=89.98 Aligned_cols=50 Identities=24% Similarity=0.393 Sum_probs=40.7
Q ss_pred CCCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 44 EDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 44 ~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
....++..|+||++.+.++ +.++|||.||..|+.+|+..+ .+||+||+.+
T Consensus 10 ~~~~~~~~C~IC~~~~~~~----~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~ 59 (71)
T 2d8t_A 10 APSLTVPECAICLQTCVHP----VSLPCKHVFCYLCVKGASWLG-KRCALCRQEI 59 (71)
T ss_dssp CSSSSCCBCSSSSSBCSSE----EEETTTEEEEHHHHHHCTTCS-SBCSSSCCBC
T ss_pred ccCCCCCCCccCCcccCCC----EEccCCCHHHHHHHHHHHHCC-CcCcCcCchh
Confidence 3445566899999998776 444699999999999999855 4999999875
No 16
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.70 E-value=2.4e-17 Score=88.45 Aligned_cols=53 Identities=25% Similarity=0.464 Sum_probs=43.1
Q ss_pred CCCCCcccccccccccccccCCeeeEecC-CCCcccHHHHHHHHhcC-CCcCccCCCCC
Q 037626 42 EAEDSKVEEICSICLMEFEKEDVVSRLTR-CCHLFHADCIERWLDCN-QFTCPVCRSFF 98 (99)
Q Consensus 42 ~~~~~~~~~~C~IC~~~~~~~~~~~~l~~-C~H~fh~~Ci~~w~~~~-~~~CP~CR~~~ 98 (99)
+.....++..|+||++.+.++ +.++ |||.||..||.+|++.+ ..+||+||+++
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 8 EDDPIPDELLCLICKDIMTDA----VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp CCCCSCGGGSCSSSCCCCTTC----EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred ccccCCCCCCCcCCChHHhCC----eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 344556677899999999887 5556 99999999999999854 24899999875
No 17
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2.3e-17 Score=89.85 Aligned_cols=52 Identities=23% Similarity=0.561 Sum_probs=42.0
Q ss_pred CCCCCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 42 EAEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 42 ~~~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
..++...+..|+||++.+.++ +.++|||.||..|+.+|++.+. +||+||+++
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~ 59 (81)
T 2csy_A 8 GSEEEEIPFRCFICRQAFQNP----VVTKCRHYFCESCALEHFRATP-RCYICDQPT 59 (81)
T ss_dssp CSSCCCCCSBCSSSCSBCCSE----EECTTSCEEEHHHHHHHHHHCS-BCSSSCCBC
T ss_pred CcccCCCCCCCcCCCchhcCe----eEccCCCHhHHHHHHHHHHCCC-cCCCcCccc
Confidence 334445566899999999776 4557999999999999998544 899999875
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=3.1e-17 Score=90.33 Aligned_cols=56 Identities=25% Similarity=0.636 Sum_probs=44.1
Q ss_pred CCCCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcC--CCcCccCCCCC
Q 037626 43 AEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCN--QFTCPVCRSFF 98 (99)
Q Consensus 43 ~~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~--~~~CP~CR~~~ 98 (99)
.+...++..|+||++.+.+.+...+.++|||.||..|+.+|++.+ ..+||+||+++
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKIT 66 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCB
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcc
Confidence 344555678999999998865433555799999999999999864 35899999864
No 19
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.69 E-value=1.8e-17 Score=86.76 Aligned_cols=50 Identities=16% Similarity=0.480 Sum_probs=41.2
Q ss_pred ccccccccc-ccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 49 EEICSICLM-EFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 49 ~~~C~IC~~-~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
+..|+||++ .+.++.....+++|||.||..|+.+|+.+++.+||+||+++
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 53 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcc
Confidence 467999999 78777654455579999999999999876666899999875
No 20
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=4.4e-17 Score=86.93 Aligned_cols=51 Identities=31% Similarity=0.665 Sum_probs=41.1
Q ss_pred CCCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhc--CCCcCccCCCCC
Q 037626 44 EDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDC--NQFTCPVCRSFF 98 (99)
Q Consensus 44 ~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~--~~~~CP~CR~~~ 98 (99)
....++..|+||++.+.++ +.++|||.||..|+..|++. ++.+||+||+++
T Consensus 15 ~~~~~~~~C~IC~~~~~~~----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKP----VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV 67 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSE----EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCC
T ss_pred HhCccCCEeccCCcccCCe----EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcC
Confidence 4445567899999999866 44479999999999999973 445899999875
No 21
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.68 E-value=2.6e-17 Score=85.65 Aligned_cols=50 Identities=28% Similarity=0.642 Sum_probs=39.5
Q ss_pred ccccccccccccccC---CeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 48 VEEICSICLMEFEKE---DVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 48 ~~~~C~IC~~~~~~~---~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
++.+|+||++.+.++ ......++|||.||.+|+.+|++++. +||+||+++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~ 54 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKI 54 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCS-BCTTTCCBC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCC-CCCCCCccC
Confidence 356799999999764 22224446999999999999998654 999999875
No 22
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=4.4e-17 Score=88.64 Aligned_cols=58 Identities=24% Similarity=0.646 Sum_probs=45.0
Q ss_pred CCCCCCCCcccccccccccccccCCeeeEecCCC-----CcccHHHHHHHHhcC-CCcCccCCCCC
Q 037626 39 YQPEAEDSKVEEICSICLMEFEKEDVVSRLTRCC-----HLFHADCIERWLDCN-QFTCPVCRSFF 98 (99)
Q Consensus 39 ~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~~C~-----H~fh~~Ci~~w~~~~-~~~CP~CR~~~ 98 (99)
+........++..|.||++++.+++.+ .+ +|+ |.||.+||++|+..+ +.+||+||+.+
T Consensus 5 ~s~~s~~~~~~~~C~IC~~~~~~~~~l-~~-pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~ 68 (80)
T 2d8s_A 5 SSGTSITPSSQDICRICHCEGDDESPL-IT-PCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 68 (80)
T ss_dssp CCCCCCCCTTSCCCSSSCCCCCSSSCE-EC-SSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBC
T ss_pred cCCCCCCCCCCCCCeEcCccccCCCee-Ee-ccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCee
Confidence 344455556667899999999876665 44 586 999999999999864 35899999876
No 23
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.67 E-value=3.8e-17 Score=86.15 Aligned_cols=48 Identities=38% Similarity=0.774 Sum_probs=39.2
Q ss_pred cccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 47 KVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
+.+..|+||++.+.++ . ..++|||.||..|+.+|++++. +||+||+++
T Consensus 3 ~~~~~C~IC~~~~~~~--~-~~~~C~H~fc~~Ci~~~~~~~~-~CP~Cr~~~ 50 (68)
T 1chc_A 3 TVAERCPICLEDPSNY--S-MALPCLHAFCYVCITRWIRQNP-TCPLCKVPV 50 (68)
T ss_dssp CCCCCCSSCCSCCCSC--E-EETTTTEEESTTHHHHHHHHSC-STTTTCCCC
T ss_pred CCCCCCeeCCccccCC--c-EecCCCCeeHHHHHHHHHhCcC-cCcCCChhh
Confidence 3456799999998754 2 4457999999999999998665 999999875
No 24
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.66 E-value=5.6e-17 Score=87.63 Aligned_cols=49 Identities=20% Similarity=0.401 Sum_probs=41.2
Q ss_pred CcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 46 SKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 46 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
..++..|+||++.+.++ +.++|||.||..||.+|+..++.+||+||+++
T Consensus 5 ~~~~~~C~IC~~~~~~P----v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~ 53 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDP----VIVSTGQTYERSSIQKWLDAGHKTCPKSQETL 53 (78)
T ss_dssp CSSSSSCTTTSCCCSSE----EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBC
T ss_pred CcccCCCCCccccccCC----EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCC
Confidence 45567899999999877 44479999999999999986566899999875
No 25
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.66 E-value=4e-17 Score=92.22 Aligned_cols=48 Identities=33% Similarity=0.754 Sum_probs=40.6
Q ss_pred cccccccccccccccCCeeeEe-cCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 47 KVEEICSICLMEFEKEDVVSRL-TRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~l-~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
.++..|+||++.+.++ +. ++|||.||..||.+|+..++.+||+||+++
T Consensus 20 ~~~~~C~IC~~~~~~p----~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 68 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDA----RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPL 68 (100)
T ss_dssp HHHTBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCCccCCccccCc----cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcC
Confidence 3456799999999876 44 689999999999999997645899999875
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.66 E-value=2.9e-17 Score=97.61 Aligned_cols=46 Identities=33% Similarity=0.761 Sum_probs=38.7
Q ss_pred ccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 48 VEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
++..|+||++.+.++ +.++|||.||..|+..|+..+ .+||+||+++
T Consensus 52 ~~~~C~iC~~~~~~~----~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~ 97 (138)
T 4ayc_A 52 NELQCIICSEYFIEA----VTLNCAHSFCSYCINEWMKRK-IECPICRKDI 97 (138)
T ss_dssp HHSBCTTTCSBCSSE----EEETTSCEEEHHHHHHHTTTC-SBCTTTCCBC
T ss_pred ccCCCcccCcccCCc----eECCCCCCccHHHHHHHHHcC-CcCCCCCCcC
Confidence 345799999999876 445799999999999999854 4899999875
No 27
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.65 E-value=3.3e-17 Score=88.63 Aligned_cols=52 Identities=25% Similarity=0.492 Sum_probs=42.1
Q ss_pred CCCCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcC------CCcCccCCCCC
Q 037626 43 AEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCN------QFTCPVCRSFF 98 (99)
Q Consensus 43 ~~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~------~~~CP~CR~~~ 98 (99)
.....++..|+||++.+.++ +.++|||.||..|+.+|++.+ ..+||+||+++
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEP----LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp SCCCCCCCEETTTTEECSSC----CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred HhhcccCCCCcCCCcccCCe----eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 34455667899999999877 445799999999999999852 45899999875
No 28
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.64 E-value=2.6e-16 Score=87.41 Aligned_cols=53 Identities=25% Similarity=0.464 Sum_probs=42.8
Q ss_pred CCCCCcccccccccccccccCCeeeEecC-CCCcccHHHHHHHHhcC-CCcCccCCCCC
Q 037626 42 EAEDSKVEEICSICLMEFEKEDVVSRLTR-CCHLFHADCIERWLDCN-QFTCPVCRSFF 98 (99)
Q Consensus 42 ~~~~~~~~~~C~IC~~~~~~~~~~~~l~~-C~H~fh~~Ci~~w~~~~-~~~CP~CR~~~ 98 (99)
+.....++..|+||++.+.++ +.++ |||.||..||..|+..+ ..+||+||+++
T Consensus 6 ~~~~~~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 6 EDDPIPDELLCLICKDIMTDA----VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp SCCCCCTTTEETTTTEECSSC----EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred ccccCCcCCCCCCCChhhcCc----eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 334455667899999999987 5557 99999999999999743 35899999875
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=3.5e-16 Score=81.32 Aligned_cols=48 Identities=33% Similarity=0.697 Sum_probs=38.8
Q ss_pred CCCCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhc--CCCcCccC
Q 037626 43 AEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDC--NQFTCPVC 94 (99)
Q Consensus 43 ~~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~--~~~~CP~C 94 (99)
.+...++..|+||++.+.++ +.++|||.||..|+.+|++. ++.+||+|
T Consensus 14 ~~~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 14 VNKLQEEVICPICLDILQKP----VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCBCTTTCSBCSSC----EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHhCccCCCCCcCCchhCCe----EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34455667899999999877 44579999999999999984 34489998
No 30
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.6e-17 Score=87.28 Aligned_cols=50 Identities=34% Similarity=0.767 Sum_probs=40.1
Q ss_pred CCCCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 43 AEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 43 ~~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
.....++..|+||++.+.+ ..+ +|||.||..|+.+|++. +.+||+||+++
T Consensus 9 ~~~~~~~~~C~IC~~~~~~----~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~ 58 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD----LIL-PCAHSFCQKCIDKWSDR-HRNCPICRLQM 58 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS----EEE-TTTEEECHHHHHHSSCC-CSSCHHHHHCT
T ss_pred hhcCCCCCCCeeCCcCccC----ccc-CCCCcccHHHHHHHHHC-cCcCCCcCCcc
Confidence 3444556789999999876 244 69999999999999984 45999999865
No 31
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=4.3e-16 Score=85.07 Aligned_cols=51 Identities=35% Similarity=0.643 Sum_probs=41.8
Q ss_pred CCCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcC-----CCcCccCCCCC
Q 037626 44 EDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCN-----QFTCPVCRSFF 98 (99)
Q Consensus 44 ~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~-----~~~CP~CR~~~ 98 (99)
....++..|+||++.+.++ ..++|||.||..|+..|+... ...||.||+++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEP----VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSC----EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC
T ss_pred HhCccCCCCcCCChhhCcc----eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcC
Confidence 3445567899999999887 455799999999999999862 55899999875
No 32
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.64 E-value=2e-17 Score=95.71 Aligned_cols=50 Identities=32% Similarity=0.656 Sum_probs=0.9
Q ss_pred ccccccccccccccCC--------------eeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 48 VEEICSICLMEFEKED--------------VVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 48 ~~~~C~IC~~~~~~~~--------------~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
.++.|+||++++.++. ..+..++|+|.||..||.+|++.+. +||+||+++
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~-~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNREW 110 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCC-cCCCCCCee
Confidence 3568999999997531 1223357999999999999999654 999999874
No 33
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3.1e-16 Score=80.12 Aligned_cols=49 Identities=39% Similarity=0.912 Sum_probs=38.9
Q ss_pred CCCCCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhc--CCCcCccC
Q 037626 42 EAEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDC--NQFTCPVC 94 (99)
Q Consensus 42 ~~~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~--~~~~CP~C 94 (99)
..+...++..|+||++.+.++ +.++|||.||..|+.+|++. ++.+||+|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 8 ALENLQVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSSCSCCCCBCSSSCCBCSSC----CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred HhhccccCCCCccCCcccCcc----EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 344455667899999999887 44579999999999999653 44589998
No 34
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.62 E-value=3.5e-16 Score=84.72 Aligned_cols=54 Identities=20% Similarity=0.384 Sum_probs=40.5
Q ss_pred CCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 45 DSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 45 ~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
..+++.+|+||++++..++......+|||.||..|+.++++.....||.||+++
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~ 60 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 60 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBC
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCcc
Confidence 345567899999998654332211249999999999999865566899999875
No 35
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.62 E-value=2e-16 Score=92.36 Aligned_cols=48 Identities=27% Similarity=0.534 Sum_probs=40.4
Q ss_pred cccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 47 KVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
.++..|+||++.+.++ +.++|||.||..|+..|+..+..+||+||+++
T Consensus 50 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 97 (124)
T 3fl2_A 50 EETFQCICCQELVFRP----ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDL 97 (124)
T ss_dssp HHHTBCTTTSSBCSSE----EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred ccCCCCCcCChHHcCc----EEeeCCCcccHHHHHHHHhHCcCCCCCCCccC
Confidence 3456799999999877 54579999999999999986555899999875
No 36
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.61 E-value=1.2e-16 Score=92.15 Aligned_cols=52 Identities=25% Similarity=0.496 Sum_probs=42.9
Q ss_pred CCCCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 43 AEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 43 ~~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
.....++..|+||++.+.++ +.++|||.||..|+.+|+..++.+||+||+.+
T Consensus 9 ~~~~~~~~~C~iC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 9 AIPSLSECQCGICMEILVEP----VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60 (115)
T ss_dssp CCCCHHHHBCTTTCSBCSSC----EECTTSCEECHHHHCCCCCTTTSBCTTTCCBC
T ss_pred ccCCCCCCCCccCCcccCce----eEcCCCCHHhHHHHHHHHhHCcCCCCCCCccc
Confidence 34445567899999999877 45579999999999999986566899999875
No 37
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=8.2e-16 Score=83.93 Aligned_cols=51 Identities=29% Similarity=0.587 Sum_probs=41.2
Q ss_pred CCCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhc-----CCCcCccCCCCC
Q 037626 44 EDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDC-----NQFTCPVCRSFF 98 (99)
Q Consensus 44 ~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~-----~~~~CP~CR~~~ 98 (99)
....++..|+||++.+.++ ..++|||.||..|+..|+.. +...||.||+.+
T Consensus 14 ~~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQP----LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISY 69 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSC----BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSS
T ss_pred HHccCCCCCCCCCcccCCc----eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCcc
Confidence 3445567899999999876 44479999999999999975 245899999875
No 38
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.61 E-value=2.9e-16 Score=92.11 Aligned_cols=51 Identities=27% Similarity=0.621 Sum_probs=40.6
Q ss_pred cccccccccccccccC---CeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 47 KVEEICSICLMEFEKE---DVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 47 ~~~~~C~IC~~~~~~~---~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
.++..|+||++.+.++ ....+.++|||.||.+||.+|++.+. +||+||+.+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~ 58 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKI 58 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCS-BCTTTCCBC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCC-CCCCCCCcC
Confidence 4556899999999765 23334446999999999999998555 999999875
No 39
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.59 E-value=5.9e-16 Score=87.13 Aligned_cols=47 Identities=26% Similarity=0.609 Sum_probs=38.7
Q ss_pred ccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 48 VEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
++..|+||++.+.++ ..+++|||.||..|+..|+..+ .+||+||+++
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~ 67 (99)
T 2y43_A 21 DLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYK-TQCPTCCVTV 67 (99)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTC-CBCTTTCCBC
T ss_pred CCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCC-CCCCCCCCcC
Confidence 346799999999875 2333799999999999999954 4999999875
No 40
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.58 E-value=1.3e-15 Score=87.02 Aligned_cols=48 Identities=27% Similarity=0.663 Sum_probs=39.6
Q ss_pred cccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 47 KVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
.++..|+||++.+.++ ..+++|||.||..|+..|+..+ .+||+||+.+
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~ 60 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETS-KYCPICDVQV 60 (108)
T ss_dssp GGGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSC-SBCTTTCCBS
T ss_pred CCcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhC-CcCcCCCccc
Confidence 4566899999999875 2343799999999999999855 5999999875
No 41
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.57 E-value=1.5e-15 Score=87.98 Aligned_cols=51 Identities=27% Similarity=0.532 Sum_probs=42.2
Q ss_pred CCCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 44 EDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 44 ~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
....++..|+||++.+.++ +.++|||.||..|+..|+..+..+||+||+++
T Consensus 13 ~~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 63 (118)
T 3hct_A 13 PPLESKYECPICLMALREA----VQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL 63 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBC
T ss_pred cCCCCCCCCCcCChhhcCe----EECCcCChhhHHHHHHHHhhCCCCCCCCCCCc
Confidence 3445567899999999877 44579999999999999986555899999875
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.56 E-value=1.4e-15 Score=91.55 Aligned_cols=47 Identities=28% Similarity=0.620 Sum_probs=40.1
Q ss_pred ccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 48 VEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
++..|+||++.+.++ +.++|||.||..|+..|+..+..+||+||+++
T Consensus 77 ~~~~C~IC~~~~~~p----v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 123 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP----VTTECFHNVCKDCLQRSFKAQVFSCPACRHDL 123 (150)
T ss_dssp HHTBCTTTSSBCSSE----EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred cCCEeecCChhhcCC----EEcCCCCchhHHHHHHHHHhCCCcCCCCCccC
Confidence 345799999999877 44579999999999999996655899999875
No 43
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=3.7e-15 Score=79.68 Aligned_cols=52 Identities=21% Similarity=0.616 Sum_probs=41.0
Q ss_pred CCCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcC-CCcCccCCCCC
Q 037626 44 EDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCN-QFTCPVCRSFF 98 (99)
Q Consensus 44 ~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~-~~~CP~CR~~~ 98 (99)
.-.+...+|+||.+.+..++. ...|+|.||..|+.+|++++ +.+||+||+++
T Consensus 10 ~y~~~i~~C~IC~~~i~~g~~---C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w 62 (74)
T 2ct0_A 10 TYPDAVKICNICHSLLIQGQS---CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62 (74)
T ss_dssp CCSSSSCBCSSSCCBCSSSEE---CSSSCCEECHHHHHHHSTTCSSCCCTTTCSCC
T ss_pred hccCCCCcCcchhhHcccCCc---cCCCCchhhHHHHHHHHHhcCCCCCCCCcCcC
Confidence 334445679999999986643 33799999999999999865 24899999876
No 44
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.56 E-value=1.5e-15 Score=92.48 Aligned_cols=48 Identities=35% Similarity=0.704 Sum_probs=39.9
Q ss_pred ccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 48 VEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
++..|+||++.+.++ ..+++|||.||..|+..|+..++..||+||.++
T Consensus 53 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 53 SELMCPICLDMLKNT---MTTKECLHRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp HHHBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCCCcccChHhhCc---CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 445899999999875 234479999999999999996566899999875
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.55 E-value=1.9e-15 Score=87.20 Aligned_cols=48 Identities=33% Similarity=0.508 Sum_probs=40.4
Q ss_pred cccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 47 KVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
.++..|+||++.+.++ +.++|||.||..|+.+|+..+..+||+||+++
T Consensus 21 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 68 (116)
T 1rmd_A 21 VKSISCQICEHILADP----VETSCKHLFCRICILRCLKVMGSYCPSCRYPC 68 (116)
T ss_dssp HHHTBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred cCCCCCCCCCcHhcCc----EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCC
Confidence 3456899999999876 44579999999999999987555899999875
No 46
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.53 E-value=3.1e-15 Score=85.65 Aligned_cols=46 Identities=28% Similarity=0.647 Sum_probs=38.2
Q ss_pred cccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCC--CcCccCCCCC
Q 037626 49 EEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQ--FTCPVCRSFF 98 (99)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~--~~CP~CR~~~ 98 (99)
+..|+||++.+.++ ..++|||.||..|+..|+..+. .+||+||+++
T Consensus 21 ~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 68 (112)
T 1jm7_A 21 ILECPICLELIKEP----VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68 (112)
T ss_dssp HTSCSSSCCCCSSC----CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCC
T ss_pred CCCCcccChhhcCe----EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcC
Confidence 45799999999877 4457999999999999998532 4799999875
No 47
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.52 E-value=5.6e-15 Score=86.55 Aligned_cols=51 Identities=27% Similarity=0.621 Sum_probs=40.5
Q ss_pred cccccccccccccccC---CeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 47 KVEEICSICLMEFEKE---DVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 47 ~~~~~C~IC~~~~~~~---~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
+++..|+||++.+.++ ......++|||.||..|+++|++.+. +||+||+++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~ 123 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKI 123 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCS-BCTTTCCBC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCC-CCCCCCCcC
Confidence 4456799999998764 22234457999999999999999665 999999875
No 48
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.51 E-value=7e-15 Score=76.74 Aligned_cols=47 Identities=28% Similarity=0.528 Sum_probs=38.0
Q ss_pred cccccccccccccccCCeeeEec--CCCCc-ccHHHHHHHHhcCCCcCccCCCCC
Q 037626 47 KVEEICSICLMEFEKEDVVSRLT--RCCHL-FHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~l~--~C~H~-fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
+++..|+||++...+. .+. +|||. ||.+|+.+|.+.+. .||+||+++
T Consensus 6 ~~~~~C~IC~~~~~~~----~~~~~pCgH~~~C~~C~~~~~~~~~-~CPiCR~~i 55 (64)
T 2vje_A 6 NAIEPCVICQGRPKNG----CIVHGKTGHLMACFTCAKKLKKRNK-PCPVCRQPI 55 (64)
T ss_dssp GGGSCCTTTSSSCSCE----EEEETTEEEEEECHHHHHHHHHTTC-CCTTTCCCC
T ss_pred CCcCCCCcCCCCCCCE----EEECCCCCChhhHHHHHHHHHHcCC-cCCCcCcch
Confidence 3556799999987655 333 79999 89999999998554 899999976
No 49
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.50 E-value=1e-14 Score=75.92 Aligned_cols=50 Identities=22% Similarity=0.426 Sum_probs=38.5
Q ss_pred CcccccccccccccccCCeeeEecCCCCc-ccHHHHHHHHhcCCCcCccCCCCC
Q 037626 46 SKVEEICSICLMEFEKEDVVSRLTRCCHL-FHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 46 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~-fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
.+.+..|+||++...+. +....+|||. ||.+|+.+|.+.+ ..||+||+++
T Consensus 4 ~~~~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i 54 (63)
T 2vje_B 4 QNLLKPCSLCEKRPRDG--NIIHGRTGHLVTCFHCARRLKKAG-ASCPICKKEI 54 (63)
T ss_dssp GGGGSBCTTTSSSBSCE--EEEETTEEEEEECHHHHHHHHHTT-CBCTTTCCBC
T ss_pred CCcCCCCcccCCcCCCe--EEEecCCCCHhHHHHHHHHHHHhC-CcCCCcCchh
Confidence 34456899999986654 2122379998 9999999998855 4899999976
No 50
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.50 E-value=3.3e-15 Score=89.09 Aligned_cols=50 Identities=18% Similarity=0.413 Sum_probs=41.5
Q ss_pred CCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 45 DSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 45 ~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
..+++..|+||++.+.++ +.++|||.||..||.+|+..+..+||+||.++
T Consensus 27 ~l~~~~~C~IC~~~~~~p----v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRP----FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GCCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCcCcCCCCCChhhcCc----EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 345567899999999887 44579999999999999986655899999853
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.48 E-value=5.6e-15 Score=75.16 Aligned_cols=45 Identities=24% Similarity=0.566 Sum_probs=36.7
Q ss_pred CcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 46 SKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 46 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
+.++..|+||++.+.++ +.++|||.||..|+..| ..+||+||+++
T Consensus 3 e~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~ 47 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCP----KLLPCLHTLCSGCLEAS----GMQCPICQAPW 47 (56)
T ss_dssp SCCCSSCSSSCSSCBCC----SCSTTSCCSBTTTCSSS----SSSCSSCCSSS
T ss_pred cccCCCceEeCCccCCe----EEcCCCCcccHHHHccC----CCCCCcCCcEe
Confidence 34556799999999887 45579999999999873 34899999875
No 52
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.48 E-value=6e-14 Score=77.00 Aligned_cols=49 Identities=16% Similarity=0.004 Sum_probs=41.5
Q ss_pred CCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 45 DSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 45 ~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
...++..|+||++.|.++ +..+|||+|+..||..|+.. +.+||+||+++
T Consensus 10 ~~p~~~~CpI~~~~m~dP----V~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l 58 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDP----VRLPSGTVMDRSIILRHLLN-SPTDPFNRQML 58 (85)
T ss_dssp TCCTTTBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHH-CSBCTTTCCBC
T ss_pred cCchheECcccCchhcCC----eECCCCCEECHHHHHHHHhc-CCCCCCCcCCC
Confidence 344567899999999988 66679999999999999985 45999999875
No 53
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.46 E-value=3e-14 Score=96.50 Aligned_cols=45 Identities=27% Similarity=0.801 Sum_probs=38.4
Q ss_pred ccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 50 EICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
..|+||++.+.++ +.++|||.||..|+..|+..+..+||+||+++
T Consensus 333 ~~C~ICle~~~~p----v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i 377 (389)
T 2y1n_A 333 QLCKICAENDKDV----KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377 (389)
T ss_dssp SBCTTTSSSBCCE----EEETTCCEECHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCccCcCCCCe----EEeCCCChhhHHHHHHHHhcCCCCCCCCCCcc
Confidence 5799999998765 55579999999999999985455899999875
No 54
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.44 E-value=7.7e-14 Score=85.26 Aligned_cols=51 Identities=27% Similarity=0.532 Sum_probs=42.1
Q ss_pred CCCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 44 EDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 44 ~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
....++..|+||++.+.++ +.++|||.||..|+.+|+..+..+||+||.++
T Consensus 13 ~~~~~~~~C~IC~~~~~~p----v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 63 (170)
T 3hcs_A 13 PPLESKYECPICLMALREA----VQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL 63 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBC
T ss_pred cCCCCCCCCCCCChhhcCc----EECCCCCHHHHHHHHHHHHhCCCCCCCCccCc
Confidence 3445667899999999877 44579999999999999986555899999875
No 55
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.43 E-value=1.5e-13 Score=77.21 Aligned_cols=48 Identities=19% Similarity=0.018 Sum_probs=41.0
Q ss_pred CcccccccccccccccCCeeeEecCCC-CcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 46 SKVEEICSICLMEFEKEDVVSRLTRCC-HLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 46 ~~~~~~C~IC~~~~~~~~~~~~l~~C~-H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
..++..|+||++.|.+| +.++|| |+|++.||..|+.. +.+||+||+++
T Consensus 19 ~p~~~~CpI~~~~m~dP----V~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l 67 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDP----VVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPL 67 (98)
T ss_dssp CCTTTBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBC
T ss_pred CcHhcCCcCccccccCC----eECCCCCeEECHHHHHHHHHh-CCCCCCCCCCC
Confidence 34566899999999988 666799 99999999999985 45899999875
No 56
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.43 E-value=1.2e-13 Score=77.97 Aligned_cols=48 Identities=15% Similarity=-0.048 Sum_probs=40.8
Q ss_pred CcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 46 SKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 46 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
..++..|+||++.|.+| +.++|||+|+..||..|+.. +.+||.||+++
T Consensus 26 ~p~~~~CpI~~~~m~dP----V~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l 73 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDP----VRLPSGTIMDRSIILRHLLN-SPTDPFNRQTL 73 (100)
T ss_dssp CSTTTBCTTTCSBCSSE----EEETTTEEEEHHHHHHHTTS-CSBCSSSCCBC
T ss_pred CcHhhCCcCccCcccCC----eECCCCCEEchHHHHHHHHc-CCCCCCCCCCC
Confidence 34456899999999988 55579999999999999984 55999999875
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.42 E-value=3.1e-14 Score=76.24 Aligned_cols=42 Identities=29% Similarity=0.630 Sum_probs=35.4
Q ss_pred ccccccccccccccCCeeeEecCCCCc-ccHHHHHHHHhcCCCcCccCCCCC
Q 037626 48 VEEICSICLMEFEKEDVVSRLTRCCHL-FHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~l~~C~H~-fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
++..|+||++.+.++ .+++|||. ||..|+..| ..||+||+++
T Consensus 23 ~~~~C~iC~~~~~~~----~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i 65 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI----VFVPCGHLVTCKQCAEAV-----DKCPMCYTVI 65 (74)
T ss_dssp HHTBCTTTSSSBCCE----EEETTCCBCCCHHHHTTC-----SBCTTTCCBC
T ss_pred cCCCCCCCCCCCCCE----EEcCCCChhHHHHhhhcC-----ccCCCcCcCc
Confidence 345799999998766 55579999 999999998 3899999875
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.41 E-value=3.3e-13 Score=87.53 Aligned_cols=52 Identities=19% Similarity=0.080 Sum_probs=43.2
Q ss_pred CCCCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 43 AEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 43 ~~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
..+...+..|+||++.+.+| +.++|||+||..||..|+..+..+||+||.++
T Consensus 202 ~~~~~~~~~c~i~~~~~~dP----v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~ 253 (281)
T 2c2l_A 202 KRDIPDYLCGKISFELMREP----CITPSGITYDRKDIEEHLQRVGHFNPVTRSPL 253 (281)
T ss_dssp CCCCCSTTBCTTTCSBCSSE----EECSSCCEEETTHHHHHHHHTCSSCTTTCCCC
T ss_pred CCCCCcccCCcCcCCHhcCC----eECCCCCEECHHHHHHHHHHCCCCCcCCCCCC
Confidence 34445567899999999988 66679999999999999986554699999875
No 59
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.41 E-value=2.5e-14 Score=82.72 Aligned_cols=44 Identities=25% Similarity=0.540 Sum_probs=37.7
Q ss_pred ccccccccccccccCCeeeEec-CCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 48 VEEICSICLMEFEKEDVVSRLT-RCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~l~-~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
++..|+||++.+.++ +.+ +|||.||..|+..|+. ..||+||+++
T Consensus 21 ~~~~C~IC~~~~~~p----v~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~ 65 (117)
T 1jm7_B 21 KLLRCSRCTNILREP----VCLGGCEHIFCSNCVSDCIG---TGCPVCYTPA 65 (117)
T ss_dssp HTTSCSSSCSCCSSC----BCCCSSSCCBCTTTGGGGTT---TBCSSSCCBC
T ss_pred hCCCCCCCChHhhCc----cEeCCCCCHHHHHHHHHHhc---CCCcCCCCcC
Confidence 345799999999887 544 7999999999999987 4899999875
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=8e-13 Score=73.71 Aligned_cols=48 Identities=25% Similarity=0.483 Sum_probs=39.1
Q ss_pred CcccccccccccccccCCeeeEec-CCCCcccHHHHHHHHhcC-----CCcCcc--CCCC
Q 037626 46 SKVEEICSICLMEFEKEDVVSRLT-RCCHLFHADCIERWLDCN-----QFTCPV--CRSF 97 (99)
Q Consensus 46 ~~~~~~C~IC~~~~~~~~~~~~l~-~C~H~fh~~Ci~~w~~~~-----~~~CP~--CR~~ 97 (99)
...+..|+||++.|.+| +.. .|||+|+..||..|+..+ ..+||+ |++.
T Consensus 4 ~~~~~~CPI~~~~~~dP----V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKP----VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSSCCBCTTTCSBCSSE----EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCcEeECcCcCchhcCC----EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 34566899999999987 554 599999999999999753 358999 9854
No 61
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.1e-12 Score=69.15 Aligned_cols=46 Identities=24% Similarity=0.555 Sum_probs=36.6
Q ss_pred CCCcccccccccccccccCCeeeEecCCCCc-ccHHHHHHHHhcCCCcCccCCCCC
Q 037626 44 EDSKVEEICSICLMEFEKEDVVSRLTRCCHL-FHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 44 ~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~-fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
....++..|.||++...+. ++++|||. ||..|+.. . ..||+||+++
T Consensus 10 ~~~~~~~~C~IC~~~~~~~----v~~pCgH~~~C~~C~~~----~-~~CP~CR~~i 56 (68)
T 2ea5_A 10 PSEENSKDCVVCQNGTVNW----VLLPCRHTCLCDGCVKY----F-QQCPMCRQFV 56 (68)
T ss_dssp CSCCCSSCCSSSSSSCCCC----EETTTTBCCSCTTHHHH----C-SSCTTTCCCC
T ss_pred ccCCCCCCCCCcCcCCCCE----EEECCCChhhhHHHHhc----C-CCCCCCCcch
Confidence 3344456899999997766 67789999 99999984 2 3899999976
No 62
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=99.32 E-value=2.5e-13 Score=90.49 Aligned_cols=53 Identities=26% Similarity=0.569 Sum_probs=39.3
Q ss_pred CcccccccccccccccCCee----eEecCCCCcccHHHHHHHHhcCC----------CcCccCCCCC
Q 037626 46 SKVEEICSICLMEFEKEDVV----SRLTRCCHLFHADCIERWLDCNQ----------FTCPVCRSFF 98 (99)
Q Consensus 46 ~~~~~~C~IC~~~~~~~~~~----~~l~~C~H~fh~~Ci~~w~~~~~----------~~CP~CR~~~ 98 (99)
++...+|+||++.+.++..+ -..+.|||.||..|+.+|++... .+||.||+++
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pI 371 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKL 371 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcC
Confidence 34456899999998773222 12347999999999999997421 3699999875
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=5.4e-13 Score=71.48 Aligned_cols=41 Identities=29% Similarity=0.664 Sum_probs=33.7
Q ss_pred cccccccccccccCCeeeEecCCCCc-ccHHHHHHHHhcCCCcCccCCCCC
Q 037626 49 EEICSICLMEFEKEDVVSRLTRCCHL-FHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~l~~C~H~-fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
+..|+||++.+.++ ++++|||. ||..|+.. . ..||+||+++
T Consensus 25 ~~~C~IC~~~~~~~----~~~pCgH~~~C~~C~~~----~-~~CP~Cr~~i 66 (75)
T 2ecg_A 25 EKLCKICMDRNIAI----VFVPCGHLVTCKQCAEA----V-DKCPMCYTVI 66 (75)
T ss_dssp HHSCSSSCSSCCCB----CCSSSCCCCBCHHHHHH----C-SBCTTTCCBC
T ss_pred CCCCCcCCCCCCCE----EEecCCCHHHHHHHhhC----C-CCCccCCcee
Confidence 45799999998776 55679999 99999964 2 3899999875
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.30 E-value=2.8e-12 Score=79.00 Aligned_cols=51 Identities=18% Similarity=0.062 Sum_probs=42.5
Q ss_pred CCCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 44 EDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 44 ~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
.....+..||||++.|.+| +.++|||+|+..||..|+..+..+||+||.++
T Consensus 101 ~~ip~~f~CPI~~elm~DP----V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l 151 (179)
T 2f42_A 101 REIPDYLCGKISFELMREP----CITPSGITYDRKDIEEHLQRVGHFDPVTRSPL 151 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred cCCcHhhcccCccccCCCC----eECCCCCEECHHHHHHHHHhCCCCCCCCcCCC
Confidence 3445667899999999988 66679999999999999986443799999875
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.29 E-value=2.1e-12 Score=71.86 Aligned_cols=49 Identities=22% Similarity=0.683 Sum_probs=38.7
Q ss_pred ccccccccccccccCCeeeEecCCCCcccHHHHHHHHhc----C---CCcCcc--CCCC
Q 037626 48 VEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDC----N---QFTCPV--CRSF 97 (99)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~----~---~~~CP~--CR~~ 97 (99)
+..+|+||++++..++.+ .+.+|||.||.+|+.++++. + ..+||. ||..
T Consensus 4 ~~~~C~IC~~~~~~~~~~-~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMT-TIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEE-EETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccce-EcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 456799999998877554 34469999999999999863 1 247999 9986
No 66
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.26 E-value=6.2e-12 Score=64.64 Aligned_cols=50 Identities=22% Similarity=0.578 Sum_probs=36.2
Q ss_pred CcccccccccccccccCCeeeEec-CCCC---cccHHHHHHHHhc-CCCcCccCCCCC
Q 037626 46 SKVEEICSICLMEFEKEDVVSRLT-RCCH---LFHADCIERWLDC-NQFTCPVCRSFF 98 (99)
Q Consensus 46 ~~~~~~C~IC~~~~~~~~~~~~l~-~C~H---~fh~~Ci~~w~~~-~~~~CP~CR~~~ 98 (99)
++++..|.||+++..+ .+ ..| .|.| .||.+|+.+|+.. ++.+||+||.++
T Consensus 3 ~~~~~~CrIC~~~~~~--~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 3 DEDVPVCWICNEELGN--ER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57 (60)
T ss_dssp TCSCCEETTTTEECSC--CC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCEeEEeecCCCC--ce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCee
Confidence 3455689999998432 23 343 2445 8999999999975 455899999876
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.24 E-value=1.2e-12 Score=70.89 Aligned_cols=42 Identities=29% Similarity=0.630 Sum_probs=34.4
Q ss_pred ccccccccccccccCCeeeEecCCCCc-ccHHHHHHHHhcCCCcCccCCCCC
Q 037626 48 VEEICSICLMEFEKEDVVSRLTRCCHL-FHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~l~~C~H~-fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
++..|+||++...+. .+.+|||. ||..|+..| ..||+||+++
T Consensus 17 ~~~~C~IC~~~~~~~----v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i 59 (79)
T 2yho_A 17 EAMLCMVCCEEEINS----TFCPCGHTVCCESCAAQL-----QSCPVCRSRV 59 (79)
T ss_dssp HHTBCTTTSSSBCCE----EEETTCBCCBCHHHHTTC-----SBCTTTCCBC
T ss_pred CCCEeEEeCcccCcE----EEECCCCHHHHHHHHHhc-----CcCCCCCchh
Confidence 345799999987765 55579999 999999876 2899999875
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.11 E-value=3.9e-11 Score=77.48 Aligned_cols=49 Identities=29% Similarity=0.618 Sum_probs=38.7
Q ss_pred cccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcC-CCcCcc--CCCCC
Q 037626 47 KVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCN-QFTCPV--CRSFF 98 (99)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~-~~~CP~--CR~~~ 98 (99)
..+..||||++.|.+| + +...|||.|++.||..|++.+ ..+||+ ||+.+
T Consensus 179 ~~el~CPIcl~~f~DP--V-ts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l 230 (267)
T 3htk_C 179 KIELTCPITCKPYEAP--L-ISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVV 230 (267)
T ss_dssp BCCSBCTTTSSBCSSE--E-EESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEE
T ss_pred ceeeECcCccCcccCC--e-eeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcC
Confidence 3445799999999887 2 234799999999999999753 347999 99854
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=99.06 E-value=1.8e-11 Score=82.13 Aligned_cols=41 Identities=27% Similarity=0.726 Sum_probs=35.0
Q ss_pred cccccccccccccCCeeeEecCCCCc-ccHHHHHHHHhcCCCcCccCCCCC
Q 037626 49 EEICSICLMEFEKEDVVSRLTRCCHL-FHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~l~~C~H~-fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
+..|+||++.+.++ +.++|||. ||..|+..| ..||+||+++
T Consensus 295 ~~~C~IC~~~~~~~----v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i 336 (345)
T 3t6p_A 295 ERTCKVCMDKEVSV----VFIPCGHLVVCQECAPSL-----RKCPICRGII 336 (345)
T ss_dssp TCBCTTTSSSBCCE----EEETTCCEEECTTTGGGC-----SBCTTTCCBC
T ss_pred CCCCCccCCcCCce----EEcCCCChhHhHHHHhcC-----CcCCCCCCCc
Confidence 45799999998776 55579999 999999988 3899999875
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.94 E-value=3.6e-10 Score=58.15 Aligned_cols=44 Identities=14% Similarity=0.289 Sum_probs=37.6
Q ss_pred ccccccccccccCCeeeEec-CCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 50 EICSICLMEFEKEDVVSRLT-RCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~l~-~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
..|+|+++.+.++ +.. ++||+|.++||.+|++.+. +||+.++++
T Consensus 4 ~~CpIs~~~m~dP----V~~~~sG~~yer~~I~~~l~~~~-~cP~t~~~L 48 (61)
T 2bay_A 4 MLCAISGKVPRRP----VLSPKSRTIFEKSLLEQYVKDTG-NDPITNEPL 48 (61)
T ss_dssp CCCTTTCSCCSSE----EEETTTTEEEEHHHHHHHHHHHS-BCTTTCCBC
T ss_pred EEecCCCCCCCCC----EEeCCCCcEEcHHHHHHHHHhCC-CCcCCcCCC
Confidence 4699999999977 444 7999999999999998654 799999865
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.90 E-value=1.2e-09 Score=60.82 Aligned_cols=45 Identities=22% Similarity=0.451 Sum_probs=35.3
Q ss_pred cccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 51 ICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 51 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
.|++|--++..- .+.. +|+|+||.+|+..|.+++..+||.||.++
T Consensus 3 fC~~C~~Pi~iy--gRmI-PCkHvFCydCa~~~~~~~~k~Cp~C~~~V 47 (101)
T 3vk6_A 3 FCDKCGLPIKVY--GRMI-PCKHVFCYDCAILHEKKGDKMCPGCSDPV 47 (101)
T ss_dssp BCTTTCSBCSEE--EEEE-TTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred ecCccCCCeEEE--eeec-cccccHHHHHHHHHHhccCCCCcCcCCee
Confidence 477887776533 3344 69999999999999876666899999876
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.60 E-value=3.7e-08 Score=63.12 Aligned_cols=47 Identities=23% Similarity=0.696 Sum_probs=38.2
Q ss_pred cccccccccccccCCeeeEecCCCCcccHHHHHHHHhcC-CCcCccCCCCC
Q 037626 49 EEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCN-QFTCPVCRSFF 98 (99)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~-~~~CP~CR~~~ 98 (99)
-..|.||.+....+ ...+.|+|.||..|+..|++.+ +.+||.|+.++
T Consensus 180 i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 180 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp CCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 45799999998866 3445699999999999999753 34899999875
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.01 E-value=0.00036 Score=38.59 Aligned_cols=35 Identities=14% Similarity=0.425 Sum_probs=25.3
Q ss_pred cccccccccccc-ccCCeeeEecCCCCcccHHHHHH-HH
Q 037626 48 VEEICSICLMEF-EKEDVVSRLTRCCHLFHADCIER-WL 84 (99)
Q Consensus 48 ~~~~C~IC~~~~-~~~~~~~~l~~C~H~fh~~Ci~~-w~ 84 (99)
++..|+||.+.+ .++ +...+.|+|.||..|++. |.
T Consensus 2 ee~~C~~C~~~~~~~a--v~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDA--VKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBC--CEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCc--eEECCcCChHHhHHHCHHHhc
Confidence 346799999864 333 223357999999999998 43
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.83 E-value=0.00025 Score=38.91 Aligned_cols=42 Identities=26% Similarity=0.758 Sum_probs=32.1
Q ss_pred ccccccccccccCCeeeEecCCC-CcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 50 EICSICLMEFEKEDVVSRLTRCC-HLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~l~~C~-H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
..|-.|+-..+ . +..|+ |..|..|+...+..+. .||+|..++
T Consensus 29 ~nCKsCWf~~k---~---LV~C~dHYLCl~CLtlmL~~Sd-rCpIC~~pL 71 (99)
T 2ko5_A 29 QFCKSCWFENK---G---LVECNNHYLCLNCLTLLLSVSN-RCPICKMPL 71 (99)
T ss_dssp CCCCSSCSCCS---S---EEECSSCEEEHHHHHHTCSSSS-EETTTTEEC
T ss_pred ccChhhccccC---C---eeeecchhhHHHHHHHHHhhcc-CCcccCCcC
Confidence 35889987743 1 22464 9999999999988655 899999875
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=96.65 E-value=0.0016 Score=33.52 Aligned_cols=47 Identities=23% Similarity=0.383 Sum_probs=32.5
Q ss_pred CcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhc---CCCcCccCCC
Q 037626 46 SKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDC---NQFTCPVCRS 96 (99)
Q Consensus 46 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~---~~~~CP~CR~ 96 (99)
...+..|.||.+. ..+...-.|...||..|++..+.. +.-.||.|+.
T Consensus 9 ~~~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 9 LAPGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp CCTTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCCCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 3445679999753 334345578899999999877653 2236999975
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.39 E-value=0.00038 Score=35.55 Aligned_cols=51 Identities=22% Similarity=0.521 Sum_probs=35.0
Q ss_pred CcccccccccccccccCCeeeEecCCCCcccHHHHHHHHh----cCCCcCccCCC
Q 037626 46 SKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLD----CNQFTCPVCRS 96 (99)
Q Consensus 46 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~----~~~~~CP~CR~ 96 (99)
++++..|++|..++.+....+..-.|..-||..|+.--.. .....||.|+.
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 3455679999998865554445557888999999864321 14457999954
No 77
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=95.89 E-value=0.026 Score=30.60 Aligned_cols=51 Identities=20% Similarity=0.398 Sum_probs=36.5
Q ss_pred cccccccccccccc---CCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 48 VEEICSICLMEFEK---EDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 48 ~~~~C~IC~~~~~~---~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
....|.||-+++.. ++..+..-.|+--.|+.|.+-=.+..+..||.|++++
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrY 68 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRY 68 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcc
Confidence 44689999999643 3333334467778899999876665555899998764
No 78
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=95.48 E-value=0.02 Score=30.23 Aligned_cols=49 Identities=20% Similarity=0.590 Sum_probs=32.3
Q ss_pred ccccccccccccccCCeeeEecCCCCcccHHHHHHHHh----cCCCcCccCCCC
Q 037626 48 VEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLD----CNQFTCPVCRSF 97 (99)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~----~~~~~CP~CR~~ 97 (99)
+...| ||..+.++....+..-.|..-||..|+.--.. .....||.|+..
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 33456 99988764444445557888899999853211 144579999753
No 79
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=95.31 E-value=0.015 Score=29.69 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=26.1
Q ss_pred CcccccccccccccccCCeeeEec-CCCCcccHHHHH
Q 037626 46 SKVEEICSICLMEFEKEDVVSRLT-RCCHLFHADCIE 81 (99)
Q Consensus 46 ~~~~~~C~IC~~~~~~~~~~~~l~-~C~H~fh~~Ci~ 81 (99)
+.....|++|..++.+++..+..- .|.--||..|..
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 344567999999988776666666 788889999973
No 80
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=95.24 E-value=0.0039 Score=38.33 Aligned_cols=48 Identities=21% Similarity=0.569 Sum_probs=34.0
Q ss_pred ccccccccccccCCe---eeEecCCCCcccHHHHHHH------Hh----cCCCcCccCCCC
Q 037626 50 EICSICLMEFEKEDV---VSRLTRCCHLFHADCIERW------LD----CNQFTCPVCRSF 97 (99)
Q Consensus 50 ~~C~IC~~~~~~~~~---~~~l~~C~H~fh~~Ci~~w------~~----~~~~~CP~CR~~ 97 (99)
..|+||...+.+++. .+..-.|..-||..|..-- +. .....||.|+..
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 469999999987762 4455678999999997321 11 014689999864
No 81
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=94.94 E-value=0.013 Score=29.52 Aligned_cols=49 Identities=16% Similarity=0.586 Sum_probs=32.7
Q ss_pred CCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhc---CCCcCccCCCC
Q 037626 45 DSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDC---NQFTCPVCRSF 97 (99)
Q Consensus 45 ~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~---~~~~CP~CR~~ 97 (99)
+...+..|.+|.+. ..+...-.|...||..|+..-+.. +.-.||.|++.
T Consensus 7 ~~~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 7 ETDHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SSCCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred cCCCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 34556679999873 233344478889999999874332 23369999653
No 82
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=94.76 E-value=0.013 Score=30.65 Aligned_cols=51 Identities=20% Similarity=0.330 Sum_probs=33.5
Q ss_pred CCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhc---CCCcCccCCC
Q 037626 45 DSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDC---NQFTCPVCRS 96 (99)
Q Consensus 45 ~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~---~~~~CP~CR~ 96 (99)
+..+...|.||..... ++..+..-.|.-.||..|+..-... ....||.|+.
T Consensus 14 ~~~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~ 67 (75)
T 2k16_A 14 WGNQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67 (75)
T ss_dssp SSCEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHH
T ss_pred cCCCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccC
Confidence 3344557999988754 3333345578889999999754332 2346999964
No 83
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=94.74 E-value=0.053 Score=30.50 Aligned_cols=48 Identities=23% Similarity=0.505 Sum_probs=30.7
Q ss_pred cccccccccccc-----ccCCeeeEecCCCCcccHHHHHH------HHhcCCCcCccCC
Q 037626 48 VEEICSICLMEF-----EKEDVVSRLTRCCHLFHADCIER------WLDCNQFTCPVCR 95 (99)
Q Consensus 48 ~~~~C~IC~~~~-----~~~~~~~~l~~C~H~fh~~Ci~~------w~~~~~~~CP~CR 95 (99)
....|.+|+..- ..++.+.....|+..||..|+.. ......-.||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 455799998753 22345556668999999999952 2233333566664
No 84
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=94.46 E-value=0.057 Score=29.00 Aligned_cols=39 Identities=26% Similarity=0.623 Sum_probs=25.1
Q ss_pred CCCCcccccccccccccccCCeeeEecCCCCcccHHHHHHH
Q 037626 43 AEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERW 83 (99)
Q Consensus 43 ~~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w 83 (99)
.+....|+.|.||-.- ...+.. ..--|+-+||..|+++.
T Consensus 9 ~e~~~~D~~C~VC~~~-t~~~l~-pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 9 REPVVNDEMCDVCEVW-TAESLF-PCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCCCSCCCTTTCCC-CSSCCS-SCSSSSSCCCHHHHHHH
T ss_pred ccCCCCCcccCccccc-ccccee-ccccccccccHhhcccc
Confidence 3445577889999633 222111 11148899999999996
No 85
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=94.33 E-value=0.12 Score=27.43 Aligned_cols=40 Identities=20% Similarity=0.342 Sum_probs=29.6
Q ss_pred CcccccccccccccccCCeeeEec-CCCCcccHHHHHHHHhc
Q 037626 46 SKVEEICSICLMEFEKEDVVSRLT-RCCHLFHADCIERWLDC 86 (99)
Q Consensus 46 ~~~~~~C~IC~~~~~~~~~~~~l~-~C~H~fh~~Ci~~w~~~ 86 (99)
......|.+|.+.+++..-+ ..| .=+|.||..|-+..++.
T Consensus 12 ~~a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHH
T ss_pred CCCeeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHh
Confidence 34456799999999887554 333 12699999999998874
No 86
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=94.32 E-value=0.0082 Score=37.40 Aligned_cols=48 Identities=25% Similarity=0.582 Sum_probs=32.5
Q ss_pred CCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhc---CCCcCccCCC
Q 037626 45 DSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDC---NQFTCPVCRS 96 (99)
Q Consensus 45 ~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~---~~~~CP~CR~ 96 (99)
+...++.|.+|.+. ..+...-.|...||..|+..-+.. +.-.||.|+.
T Consensus 3 ~d~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 53 (207)
T 3u5n_A 3 DDPNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRD 53 (207)
T ss_dssp CCSSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeC
Confidence 34556779999854 234344578899999999765442 2236999975
No 87
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=94.26 E-value=0.011 Score=28.75 Aligned_cols=45 Identities=16% Similarity=0.346 Sum_probs=30.4
Q ss_pred cccccccccccCCeeeEec-CCCCcccHHHHHHH---HhcCCCcCccCC
Q 037626 51 ICSICLMEFEKEDVVSRLT-RCCHLFHADCIERW---LDCNQFTCPVCR 95 (99)
Q Consensus 51 ~C~IC~~~~~~~~~~~~l~-~C~H~fh~~Ci~~w---~~~~~~~CP~CR 95 (99)
.|.+|..++.+++..+..- .|.--||..|+.-- .......||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4789988886555554555 58888999997532 122556899985
No 88
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=94.11 E-value=0.013 Score=32.86 Aligned_cols=49 Identities=18% Similarity=0.416 Sum_probs=31.6
Q ss_pred CcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhc---CCCcCccCC
Q 037626 46 SKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDC---NQFTCPVCR 95 (99)
Q Consensus 46 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~---~~~~CP~CR 95 (99)
..+++.|.||.+.-+.. .+.....|+..||..|+...... ..-.||.|+
T Consensus 4 ~~~~~~C~~C~~~g~~~-~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLL-DQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCSCBTTTCCCCCTT-TSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCcCCCCCCCCc-CCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 45667899998874322 22344579999999999876532 223466553
No 89
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=94.01 E-value=0.0086 Score=30.18 Aligned_cols=49 Identities=20% Similarity=0.482 Sum_probs=31.7
Q ss_pred CCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhc---CCCcCccCCCC
Q 037626 45 DSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDC---NQFTCPVCRSF 97 (99)
Q Consensus 45 ~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~---~~~~CP~CR~~ 97 (99)
+..++..|.+|.+. + .+...-.|...||..|+..-+.. ..-.||.|+..
T Consensus 5 ~d~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 5 SDHHMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred ccCCCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 34456679999863 2 23233468889999999853332 22359999764
No 90
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=93.85 E-value=0.012 Score=35.51 Aligned_cols=49 Identities=22% Similarity=0.635 Sum_probs=32.7
Q ss_pred cccccccccccccccCCeeeEecCCCCcccHHHHHHHHh----cCCCcCccCCC
Q 037626 47 KVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLD----CNQFTCPVCRS 96 (99)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~----~~~~~CP~CR~ 96 (99)
.+...| +|..+..+.......-.|...||..|+.--.. .....||.|+.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 445578 99988765544445557888999999853211 23457999964
No 91
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=93.68 E-value=0.14 Score=30.19 Aligned_cols=49 Identities=27% Similarity=0.506 Sum_probs=33.5
Q ss_pred CCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHh----------cCCCcCccCCCC
Q 037626 45 DSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLD----------CNQFTCPVCRSF 97 (99)
Q Consensus 45 ~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~----------~~~~~CP~CR~~ 97 (99)
+...++.|.+|.+- ..+.-.-.|-..||..|+..-+. ...-.||.|+..
T Consensus 59 ~Dg~~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 59 SDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TTSCBCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 45566789999875 33334446888999999996542 133369999753
No 92
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=93.25 E-value=0.19 Score=29.13 Aligned_cols=50 Identities=26% Similarity=0.513 Sum_probs=32.6
Q ss_pred CCCcccccccccccccccCCeeeEecCCCCcccHHHHHHHH------h----cCCCcCccCCCC
Q 037626 44 EDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWL------D----CNQFTCPVCRSF 97 (99)
Q Consensus 44 ~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~------~----~~~~~CP~CR~~ 97 (99)
+++..++.|.||.+. ..+.-.-.|-..||.+|+..-+ + ...=.|+.|+..
T Consensus 52 d~Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 52 DSDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp CTTSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 335556679999865 3333334688999999999642 1 123369999753
No 93
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=93.21 E-value=0.047 Score=26.19 Aligned_cols=46 Identities=26% Similarity=0.586 Sum_probs=29.6
Q ss_pred cccccccccccCCeeeEecCCCCcccHHHHHHHHhc---CCCcCccCCCC
Q 037626 51 ICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDC---NQFTCPVCRSF 97 (99)
Q Consensus 51 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~---~~~~CP~CR~~ 97 (99)
.|.||...-.. +.+...-.|...||..|+..=+.. +.-.||.|+..
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 48888876433 333344578889999999753332 22359999753
No 94
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=93.14 E-value=0.015 Score=35.54 Aligned_cols=45 Identities=24% Similarity=0.612 Sum_probs=30.9
Q ss_pred ccccccccccccccCCeeeEecCCCCcccHHHHHHHHhc---CCCcCccCCC
Q 037626 48 VEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDC---NQFTCPVCRS 96 (99)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~---~~~~CP~CR~ 96 (99)
+++.|.+|.+. + .+...-.|...||..|+..-+.. +.-.||.|+.
T Consensus 3 ~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~ 50 (184)
T 3o36_A 3 NEDWCAVCQNG---G-ELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRD 50 (184)
T ss_dssp SCSSCTTTCCC---S-SCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSC
T ss_pred CCCccccCCCC---C-eeeecCCCCcccCccccCCCCCCCCCCCEECccccC
Confidence 45679999854 3 23344478889999998765442 2236999975
No 95
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=93.11 E-value=0.024 Score=30.65 Aligned_cols=52 Identities=21% Similarity=0.390 Sum_probs=32.7
Q ss_pred CCccccccccccccc-ccCCeeeEecCCCCcccHHHHHHHHh-cCCCcCccCCC
Q 037626 45 DSKVEEICSICLMEF-EKEDVVSRLTRCCHLFHADCIERWLD-CNQFTCPVCRS 96 (99)
Q Consensus 45 ~~~~~~~C~IC~~~~-~~~~~~~~l~~C~H~fh~~Ci~~w~~-~~~~~CP~CR~ 96 (99)
..+++..|.||.+.- .+++.+...-.|.-.||..|+..-.. .+.-.||.|+.
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~ 74 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 74 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHH
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccC
Confidence 345567899998763 23334444557888999999974221 12335888743
No 96
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=92.74 E-value=0.043 Score=29.75 Aligned_cols=51 Identities=22% Similarity=0.486 Sum_probs=34.1
Q ss_pred CCCCCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhc---CCCcCccCCC
Q 037626 42 EAEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDC---NQFTCPVCRS 96 (99)
Q Consensus 42 ~~~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~---~~~~CP~CR~ 96 (99)
......++..|.+|.+. + .+.....|.-.||..|+..=+.. +.-.||.|+.
T Consensus 18 ~~~~d~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 18 FGTLDDSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp CCSSSSSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred ccccCCCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 44555666789999865 2 33344468889999999764432 2235999974
No 97
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.64 E-value=0.0065 Score=30.04 Aligned_cols=48 Identities=27% Similarity=0.718 Sum_probs=31.3
Q ss_pred CCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhc---CCCcCccCCC
Q 037626 45 DSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDC---NQFTCPVCRS 96 (99)
Q Consensus 45 ~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~---~~~~CP~CR~ 96 (99)
...++..|.+|.+. ..+...-.|...||..|+..-+.. ..-.||.|+.
T Consensus 5 ~~~~~~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 5 SSGHEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCSSCCSCSSSCCS----SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred cCCCCCCCccCCCC----CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 34556679999875 233344478889999999854332 2225888854
No 98
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=92.50 E-value=0.03 Score=31.66 Aligned_cols=34 Identities=18% Similarity=0.419 Sum_probs=23.6
Q ss_pred ccccccccccc------cCCeeeEecCCCCcccHHHHHHH
Q 037626 50 EICSICLMEFE------KEDVVSRLTRCCHLFHADCIERW 83 (99)
Q Consensus 50 ~~C~IC~~~~~------~~~~~~~l~~C~H~fh~~Ci~~w 83 (99)
+.|.+|+..-. +++.+.....|+..||..|+...
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 45899987541 23345555579999999998743
No 99
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=92.47 E-value=0.059 Score=29.65 Aligned_cols=45 Identities=20% Similarity=0.501 Sum_probs=29.6
Q ss_pred ccccccccccccCCeeeEecCCCCcccHHHHHHHHhc--CCCcCccCCC
Q 037626 50 EICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDC--NQFTCPVCRS 96 (99)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~--~~~~CP~CR~ 96 (99)
..| ||......+. .+..-.|.-.||..|+..-... ....||.|+.
T Consensus 29 vrC-iC~~~~~~~~-mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGY-MICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSC-EEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCc-EEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 8987755443 3355578889999998652221 2347999974
No 100
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=92.44 E-value=0.092 Score=28.00 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=26.7
Q ss_pred ccccccccccccccCCeeeEecCCCCcccHHHHHHH
Q 037626 48 VEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERW 83 (99)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w 83 (99)
+...|.+|...|..-..-...-.||++||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 345799999999765443345579999999997653
No 101
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=92.37 E-value=0.083 Score=28.05 Aligned_cols=34 Identities=24% Similarity=0.513 Sum_probs=25.6
Q ss_pred cccccccccccccCCeeeEecCCCCcccHHHHHH
Q 037626 49 EEICSICLMEFEKEDVVSRLTRCCHLFHADCIER 82 (99)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~ 82 (99)
...|.+|...|..-..-...-.||.+||..|...
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 3469999999976543334558999999999764
No 102
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=92.31 E-value=0.063 Score=27.15 Aligned_cols=51 Identities=20% Similarity=0.501 Sum_probs=33.0
Q ss_pred Ccccccccccccccc-cCCeeeEecCCCCcccHHHHHHHH------hcCCCcCccCCC
Q 037626 46 SKVEEICSICLMEFE-KEDVVSRLTRCCHLFHADCIERWL------DCNQFTCPVCRS 96 (99)
Q Consensus 46 ~~~~~~C~IC~~~~~-~~~~~~~l~~C~H~fh~~Ci~~w~------~~~~~~CP~CR~ 96 (99)
+.++..|.||..... +++.+.....|.-.||..|+..-+ ....-.||.|+.
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~ 60 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVF 60 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcC
Confidence 455678999998643 233444555788999999987532 123336888853
No 103
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=92.27 E-value=0.11 Score=27.99 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=26.0
Q ss_pred cccccccccccccccCCeeeEecCCCCcccHHHHHH
Q 037626 47 KVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIER 82 (99)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~ 82 (99)
.+...|.+|...|..-..-...-.||++||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 344579999999876544334557999999998654
No 104
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=92.24 E-value=0.015 Score=29.97 Aligned_cols=51 Identities=20% Similarity=0.423 Sum_probs=32.2
Q ss_pred CCCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHh--cCCCcCccCCC
Q 037626 44 EDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLD--CNQFTCPVCRS 96 (99)
Q Consensus 44 ~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~--~~~~~CP~CR~ 96 (99)
....+...| ||..+.. ++..+..-.|..-||..|+.--.. .....||.|+.
T Consensus 14 ~~~~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 14 LYFQGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CTTTTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCCCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 334445568 9988765 333335556888999999864221 13457998865
No 105
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=92.18 E-value=0.03 Score=31.54 Aligned_cols=46 Identities=26% Similarity=0.545 Sum_probs=30.8
Q ss_pred cccccccccccCCeeeEecCCCCcccHHHHHHHHhc---CCCcCccCCC
Q 037626 51 ICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDC---NQFTCPVCRS 96 (99)
Q Consensus 51 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~---~~~~CP~CR~ 96 (99)
.|.||.+.-.+++.+...-.|...||..|+..-+.. +.-.||.||.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 588888753344444445578999999999754432 2236999975
No 106
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=91.96 E-value=0.1 Score=29.96 Aligned_cols=35 Identities=20% Similarity=0.411 Sum_probs=26.2
Q ss_pred cccccccccccccCCeeeEecCCCCcccHHHHHHH
Q 037626 49 EEICSICLMEFEKEDVVSRLTRCCHLFHADCIERW 83 (99)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w 83 (99)
...|.+|...|..-..-...-.||++||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 35799999998755433345589999999997543
No 107
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=91.88 E-value=0.19 Score=27.16 Aligned_cols=36 Identities=19% Similarity=0.377 Sum_probs=26.7
Q ss_pred ccccccccccccccCCeeeEecCCCCcccHHHHHHH
Q 037626 48 VEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERW 83 (99)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w 83 (99)
+...|.+|...|..-..-.....||++||..|....
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 345799999998755433345589999999997654
No 108
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=91.81 E-value=0.1 Score=27.02 Aligned_cols=33 Identities=18% Similarity=0.405 Sum_probs=24.9
Q ss_pred ccccccccccccCCeeeEecCCCCcccHHHHHH
Q 037626 50 EICSICLMEFEKEDVVSRLTRCCHLFHADCIER 82 (99)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~ 82 (99)
..|.+|...|..-..-...-.||.+||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 479999999876543334457999999999753
No 109
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=91.70 E-value=0.23 Score=25.64 Aligned_cols=51 Identities=22% Similarity=0.417 Sum_probs=32.5
Q ss_pred CCccccccccccccc-ccCCeeeEecCCCCcccHHHHHHHH-hcCCCcCccCC
Q 037626 45 DSKVEEICSICLMEF-EKEDVVSRLTRCCHLFHADCIERWL-DCNQFTCPVCR 95 (99)
Q Consensus 45 ~~~~~~~C~IC~~~~-~~~~~~~~l~~C~H~fh~~Ci~~w~-~~~~~~CP~CR 95 (99)
...++..|.||.+.- .+++.+...-.|.-.||..|+..-. ..+.-.||.|+
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~ 64 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCL 64 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCc
Confidence 344566799998764 2344444555788999999987422 11233588775
No 110
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=91.64 E-value=0.12 Score=25.87 Aligned_cols=42 Identities=26% Similarity=0.562 Sum_probs=28.8
Q ss_pred cccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccC
Q 037626 51 ICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVC 94 (99)
Q Consensus 51 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~C 94 (99)
.|--|...+.+.. .-..+.|++.||.+|=.- +...-.+||-|
T Consensus 17 ~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~f-iHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQH-VYVCAVCQNVFCVDCDVF-VHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSE-EECCTTTTCCBCHHHHHT-TTTTSCSSSTT
T ss_pred cccccCcccCCCc-cEECCccCcCcccchhHH-HHhhccCCcCC
Confidence 4999999985432 234678999999999443 22222379988
No 111
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=91.41 E-value=0.28 Score=37.23 Aligned_cols=49 Identities=14% Similarity=0.050 Sum_probs=39.2
Q ss_pred CCcccccccccccccccCCeeeEecCCC-CcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 45 DSKVEEICSICLMEFEKEDVVSRLTRCC-HLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 45 ~~~~~~~C~IC~~~~~~~~~~~~l~~C~-H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
+..++-.|||=++.+.+| +.++-| +++-+..|.+|+..+ .+||.=|+++
T Consensus 887 ~iP~~F~cPIs~~lM~DP----VilpsG~~TydR~~I~~wl~~~-~tdP~Tr~~L 936 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDP----VILPASKMNIDRSTIKAHLLSD-STDPFNRMPL 936 (968)
T ss_dssp CSCGGGBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHHTTC-CBCTTTCCBC
T ss_pred CCcHHhCCcchhhHHhCC----eEcCCCCEEECHHHHHHHHhcC-CCCCCCCCCC
Confidence 344556799999999988 666677 689999999999854 4999877754
No 112
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.27 E-value=0.12 Score=27.55 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=25.0
Q ss_pred cccccccccccccCCeeeEecCCCCcccHHHHHH
Q 037626 49 EEICSICLMEFEKEDVVSRLTRCCHLFHADCIER 82 (99)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~ 82 (99)
...|.+|...|..-..-...-.||.+||..|...
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 3479999999865543334457999999999654
No 113
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=91.21 E-value=0.09 Score=27.41 Aligned_cols=45 Identities=27% Similarity=0.613 Sum_probs=29.2
Q ss_pred ccccccccccccCCeeeEecCCCCcccHHHHHHHH--------hcCCCcCccCCC
Q 037626 50 EICSICLMEFEKEDVVSRLTRCCHLFHADCIERWL--------DCNQFTCPVCRS 96 (99)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~--------~~~~~~CP~CR~ 96 (99)
..| ||......... +..-.|..-||..|+.--. ......||.|+.
T Consensus 17 ~~C-~C~~~~~~~~M-I~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 17 LYC-ICRQPHNNRFM-ICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp CCS-TTCCCCCSSCE-EECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CEE-ECCCccCCCCE-EEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 457 89888654333 3445688899999984211 124567999964
No 114
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=91.10 E-value=0.16 Score=26.21 Aligned_cols=48 Identities=23% Similarity=0.589 Sum_probs=28.9
Q ss_pred CCcccccccccccccccCCeeeEecC--CC-CcccHHHHHHHHhc---CCCcCccCCCC
Q 037626 45 DSKVEEICSICLMEFEKEDVVSRLTR--CC-HLFHADCIERWLDC---NQFTCPVCRSF 97 (99)
Q Consensus 45 ~~~~~~~C~IC~~~~~~~~~~~~l~~--C~-H~fh~~Ci~~w~~~---~~~~CP~CR~~ 97 (99)
+..+...| ||..... ++ .+..-. |. ..||..|+. +.. +.-.||.|+..
T Consensus 12 d~~~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 12 DPNEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp CTTSCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCCCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 33444567 8988643 32 222334 55 589999997 332 33469999753
No 115
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=90.93 E-value=0.093 Score=30.03 Aligned_cols=46 Identities=20% Similarity=0.392 Sum_probs=28.2
Q ss_pred ccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccC
Q 037626 48 VEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVC 94 (99)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~C 94 (99)
+...|..|...|..-..-...-.||..||..|....... ...|-.|
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~-vRVC~~C 63 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG-PRLCLLC 63 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC-ceECHHH
Confidence 345799999998754433345589999999997654432 2245444
No 116
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=90.52 E-value=0.12 Score=30.11 Aligned_cols=35 Identities=11% Similarity=0.168 Sum_probs=25.9
Q ss_pred cccccccccccccc-cCCeeeEecCCCCcccHHHHH
Q 037626 47 KVEEICSICLMEFE-KEDVVSRLTRCCHLFHADCIE 81 (99)
Q Consensus 47 ~~~~~C~IC~~~~~-~~~~~~~l~~C~H~fh~~Ci~ 81 (99)
..+..|.+|..++. ....-+....|+|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 45678999999994 333334666899999999854
No 117
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=90.23 E-value=0.15 Score=28.34 Aligned_cols=47 Identities=19% Similarity=0.459 Sum_probs=31.5
Q ss_pred ccccccccccccCCeeeEec-CCCCcccHHHHHHHH---h------cCCCcCccCCC
Q 037626 50 EICSICLMEFEKEDVVSRLT-RCCHLFHADCIERWL---D------CNQFTCPVCRS 96 (99)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~l~-~C~H~fh~~Ci~~w~---~------~~~~~CP~CR~ 96 (99)
..|+||..++.+.+.....- .|.--||..|+.--- + .....||.|+.
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~ 60 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLK 60 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHH
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccC
Confidence 46999999986665554554 688889999974211 0 13346999864
No 118
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=89.60 E-value=0.2 Score=27.22 Aligned_cols=45 Identities=22% Similarity=0.584 Sum_probs=27.4
Q ss_pred ccccccccccccccCCeeeEecC--CC-CcccHHHHHHHHhc---CCCcCccCCCC
Q 037626 48 VEEICSICLMEFEKEDVVSRLTR--CC-HLFHADCIERWLDC---NQFTCPVCRSF 97 (99)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~l~~--C~-H~fh~~Ci~~w~~~---~~~~CP~CR~~ 97 (99)
+...| ||..... ++. +..-. |. ..||..|+. +.. .+..||.|+..
T Consensus 35 e~~yC-iC~~~~~-g~M-I~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEM-IGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCBCS-TTCCBCC-SCC-CCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCcEE-ECCCCCC-CCE-eEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 34457 9988643 322 22224 55 579999997 332 33469999753
No 119
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=89.27 E-value=0.38 Score=24.86 Aligned_cols=29 Identities=14% Similarity=0.244 Sum_probs=19.7
Q ss_pred cccccccccccccccCCeeeEecCCCCcccHHH
Q 037626 47 KVEEICSICLMEFEKEDVVSRLTRCCHLFHADC 79 (99)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~C 79 (99)
.....|.-|-+.+... . +..-+..||.+|
T Consensus 13 ~~~~~C~~C~~~I~~~-~---~~a~~~~~H~~C 41 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGV-F---VKLRDRHRHPEC 41 (79)
T ss_dssp CCCCCCSSSCCCCCSS-C---EECSSCEECTTT
T ss_pred CCCCccccCCCCccCc-E---EEECcceeCcCc
Confidence 4456799999988753 2 223567888877
No 120
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=89.24 E-value=0.24 Score=25.47 Aligned_cols=51 Identities=18% Similarity=0.275 Sum_probs=32.7
Q ss_pred CCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHh---cCCCcCccCCC
Q 037626 45 DSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLD---CNQFTCPVCRS 96 (99)
Q Consensus 45 ~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~---~~~~~CP~CR~ 96 (99)
+......| ||..+..+++..+..-.|..-||..|+.--.. .....||.|+.
T Consensus 12 ~~~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 12 VDNWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp SCSSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred CCCcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 34445578 79887655544445557888899999864321 13457998854
No 121
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=88.69 E-value=0.17 Score=31.62 Aligned_cols=34 Identities=21% Similarity=0.592 Sum_probs=26.1
Q ss_pred cccccccccccccCCeeeEecCCCCcccHHHHHH
Q 037626 49 EEICSICLMEFEKEDVVSRLTRCCHLFHADCIER 82 (99)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~ 82 (99)
+..|.+|...|..-..-...-.||+.||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 4689999999875544345558999999999754
No 122
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=88.54 E-value=0.52 Score=24.54 Aligned_cols=40 Identities=20% Similarity=0.508 Sum_probs=25.8
Q ss_pred CcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCC
Q 037626 46 SKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSF 97 (99)
Q Consensus 46 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~ 97 (99)
......|+-|-+.+.+.+.+. .=+..||.+| ++|-.|+.+
T Consensus 12 ~~~~~~C~~C~~~I~~~~~v~---a~~~~wH~~C---------F~C~~C~~~ 51 (80)
T 2dj7_A 12 IRGPSHCAGCKEEIKHGQSLL---ALDKQWHVSC---------FKCQTCSVI 51 (80)
T ss_dssp CSSCSCCTTTCCCCSSSCCEE---ETTEEECTTT---------CBCSSSCCB
T ss_pred CCCCCCCcCcCCeeCCCeEEE---ECCccccccc---------CCcCcCCCC
Confidence 344567999999887665443 2456788777 356666554
No 123
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=87.94 E-value=0.1 Score=26.90 Aligned_cols=46 Identities=26% Similarity=0.569 Sum_probs=28.2
Q ss_pred cccccccccccCCeeeEecCCCCcccHHHHHHHHhc---C-CCcCccCCCC
Q 037626 51 ICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDC---N-QFTCPVCRSF 97 (99)
Q Consensus 51 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~---~-~~~CP~CR~~ 97 (99)
.|.||...-.. +.+...-.|...||..|+..=+.. + .=.||.|+..
T Consensus 20 ~C~~C~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCC-CCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 46677754222 333344478899999999853332 2 3369999753
No 124
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=87.80 E-value=0.5 Score=29.72 Aligned_cols=35 Identities=20% Similarity=0.536 Sum_probs=26.6
Q ss_pred cccccccccccccCCeeeEecCCCCcccHHHHHHH
Q 037626 49 EEICSICLMEFEKEDVVSRLTRCCHLFHADCIERW 83 (99)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w 83 (99)
+..|.+|...|..-..-.....||+.||..|....
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 45899999998765443455689999999997643
No 125
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=87.60 E-value=0.78 Score=23.70 Aligned_cols=38 Identities=24% Similarity=0.475 Sum_probs=22.4
Q ss_pred ccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 48 VEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
....|+-|.+.+... . +..-+..||.+| ++|-.|+.++
T Consensus 14 ~~~~C~~C~~~I~~~-~---v~a~~~~~H~~C---------F~C~~C~~~L 51 (79)
T 2cor_A 14 GKYICQKCHAIIDEQ-P---LIFKNDPYHPDH---------FNCANCGKEL 51 (79)
T ss_dssp CCCBCTTTCCBCCSC-C---CCCSSSCCCTTT---------SBCSSSCCBC
T ss_pred CCCCCccCCCEecce-E---EEECcceeCCCC---------CEeCCCCCcc
Confidence 345688888877732 2 223566777766 3566665543
No 126
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.56 E-value=0.11 Score=27.33 Aligned_cols=45 Identities=24% Similarity=0.601 Sum_probs=29.1
Q ss_pred cccccccccccCCeeeEecCCCCcccHHHHHHHHhc---C-CCcCccCCC
Q 037626 51 ICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDC---N-QFTCPVCRS 96 (99)
Q Consensus 51 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~---~-~~~CP~CR~ 96 (99)
.|.||...-.. +.+...-.|...||..|+..=+.. + .=.||.|+.
T Consensus 28 ~C~vC~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEP-NMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCS-TTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCC-CCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 68888865333 333344478899999999853332 2 236999975
No 127
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=87.30 E-value=0.84 Score=23.76 Aligned_cols=31 Identities=19% Similarity=0.535 Sum_probs=21.4
Q ss_pred CcccccccccccccccCCeeeEecCCCCcccHHH
Q 037626 46 SKVEEICSICLMEFEKEDVVSRLTRCCHLFHADC 79 (99)
Q Consensus 46 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~C 79 (99)
......|.-|.+.+...+.+. .=+..||.+|
T Consensus 12 ~~~~~~C~~C~~~I~~~e~v~---a~~~~wH~~C 42 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLERLC---VNGHFFHRSC 42 (82)
T ss_dssp CCSSCBCSSSCCBCCTTTBCC---BTTBCCBTTT
T ss_pred CCCCCCCcccCCCcccceEEE---ECCCeeCCCc
Confidence 344567999999986655443 2466788887
No 128
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=86.80 E-value=0.12 Score=25.70 Aligned_cols=45 Identities=22% Similarity=0.578 Sum_probs=27.3
Q ss_pred cccccccccccccccCCeeeEecC--CC-CcccHHHHHHHHhc---CCCcCccCCC
Q 037626 47 KVEEICSICLMEFEKEDVVSRLTR--CC-HLFHADCIERWLDC---NQFTCPVCRS 96 (99)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~l~~--C~-H~fh~~Ci~~w~~~---~~~~CP~CR~ 96 (99)
.+...| ||.+.. .+ ..+..-. |. ..||..|+. +.. ++-.||.|++
T Consensus 7 ~e~~yC-~C~~~~-~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVS-YG-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCC-CC-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 344557 898864 23 2333335 65 589999998 332 2346998864
No 129
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=86.53 E-value=0.12 Score=25.78 Aligned_cols=45 Identities=22% Similarity=0.585 Sum_probs=26.5
Q ss_pred cccccccccccccccCCeeeEecC--CC-CcccHHHHHHHHhc---CCCcCccCCC
Q 037626 47 KVEEICSICLMEFEKEDVVSRLTR--CC-HLFHADCIERWLDC---NQFTCPVCRS 96 (99)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~l~~--C~-H~fh~~Ci~~w~~~---~~~~CP~CR~ 96 (99)
.+...| ||..... + ..+..-. |. ..||..|+. +.. +.-.||.|++
T Consensus 8 ~e~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 334457 8988632 3 2323334 55 579999997 332 3346998864
No 130
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=86.29 E-value=1.3 Score=23.38 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=18.4
Q ss_pred ccccccccccccccCCeeeEecCCCCcccHHH
Q 037626 48 VEEICSICLMEFEKEDVVSRLTRCCHLFHADC 79 (99)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~C 79 (99)
....|.-|-+.+.+.+.+. .-+..||.+|
T Consensus 14 ~~~~C~~C~~~I~~~~~v~---a~~~~~H~~C 42 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLL---ANQQVFHISC 42 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEE---CSSSEEETTT
T ss_pred CCCcCccCCCccCCceeEE---ECCCEECCCC
Confidence 3456888888877655432 3456677666
No 131
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=86.09 E-value=0.1 Score=32.03 Aligned_cols=44 Identities=25% Similarity=0.620 Sum_probs=28.9
Q ss_pred cccccccccccccCCeeeEecCCCCcccHHHHHHHHhc---CCCcCccCCC
Q 037626 49 EEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDC---NQFTCPVCRS 96 (99)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~---~~~~CP~CR~ 96 (99)
++.|.+|.+. + .+.....|...||..|+..=+.. +.-.||.|+.
T Consensus 2 ~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~ 48 (189)
T 2ro1_A 2 ATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 48 (189)
T ss_dssp CCCBTTTCCC---S-SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSC
T ss_pred CCcCccCCCC---C-ceeECCCCCchhccccCCCCcccCCCCCCCCcCccC
Confidence 4569999855 2 23234467889999999754332 2336999975
No 132
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=85.88 E-value=0.44 Score=26.63 Aligned_cols=46 Identities=20% Similarity=0.440 Sum_probs=27.4
Q ss_pred CCCcccccccccccccccCCeeeEec--CCCCcccHHHHHHHHhc---CCCcCccCC
Q 037626 44 EDSKVEEICSICLMEFEKEDVVSRLT--RCCHLFHADCIERWLDC---NQFTCPVCR 95 (99)
Q Consensus 44 ~~~~~~~~C~IC~~~~~~~~~~~~l~--~C~H~fh~~Ci~~w~~~---~~~~CP~CR 95 (99)
.+..+++.|.+|.+. ..+...- .|-..||..|+. +.. +.-.||.|+
T Consensus 10 ~~~~~~~~C~~C~~~----G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 10 PKQMHEDYCFQCGDG----GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp CCCSSCSSCTTTCCC----SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred CcCCCCCCCCcCCCC----CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 334556679999842 2332332 477899999997 332 122477654
No 133
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=85.85 E-value=0.15 Score=34.70 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=0.0
Q ss_pred cccccccccccccCCeeeEecCCCCcccHHHHHHHHhc------CCCcCccCCC
Q 037626 49 EEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDC------NQFTCPVCRS 96 (99)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~------~~~~CP~CR~ 96 (99)
...|.+|..+|..-..-.....||+.||..|....... ....|-.|-.
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~ 428 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFG 428 (434)
T ss_dssp ------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHH
Confidence 45799999998754333344579999999999765421 1235777744
No 134
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.82 E-value=0.34 Score=26.23 Aligned_cols=54 Identities=22% Similarity=0.359 Sum_probs=33.4
Q ss_pred CCCCCcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhc---CCCcCccCCC
Q 037626 42 EAEDSKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDC---NQFTCPVCRS 96 (99)
Q Consensus 42 ~~~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~---~~~~CP~CR~ 96 (99)
......++..|.||...-.. +.+...-.|...||..|+..=+.. ..-.||.|+.
T Consensus 9 s~~~~~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 9 SSAQFIDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred chhhccCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 33444556679999987432 333344578889999998743221 2225888853
No 135
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=85.29 E-value=0.35 Score=24.43 Aligned_cols=47 Identities=23% Similarity=0.507 Sum_probs=30.2
Q ss_pred CcccccccccccccccCCeeeEecCCCCcccHHHHHHHHhc---CCCcCccCCC
Q 037626 46 SKVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDC---NQFTCPVCRS 96 (99)
Q Consensus 46 ~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~---~~~~CP~CR~ 96 (99)
..++..|.||.+. + .+...-.|...||..|+..-+.. +.-.||.|+.
T Consensus 5 ~~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 5 QKNEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CSCCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 3456779999864 2 33344468889999999853321 2225888843
No 136
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=84.96 E-value=1.4 Score=23.19 Aligned_cols=38 Identities=21% Similarity=0.460 Sum_probs=24.3
Q ss_pred cccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCC
Q 037626 47 KVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSF 97 (99)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~ 97 (99)
.....|.-|.+.+... . +..-+..||.+| ++|-.|+.+
T Consensus 23 ~~~~~C~~C~~~I~~~-~---~~a~~~~~H~~C---------F~C~~C~~~ 60 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGA-V---VKARDKYRHPEC---------FVCADCNLN 60 (89)
T ss_dssp CSCCBCTTTCCBCCSC-C---EESSSCEECTTT---------CCCSSSCCC
T ss_pred CcCCCcccCCCEeccc-E---EEECCceECccC---------CEecCCCCC
Confidence 3345799999988752 2 223567888887 346566554
No 137
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=84.92 E-value=0.23 Score=26.72 Aligned_cols=48 Identities=19% Similarity=0.476 Sum_probs=31.1
Q ss_pred cccccccccccccc-CCeeeEecCCCCcccHHHHHHHHh-------cCCCcCccCC
Q 037626 48 VEEICSICLMEFEK-EDVVSRLTRCCHLFHADCIERWLD-------CNQFTCPVCR 95 (99)
Q Consensus 48 ~~~~C~IC~~~~~~-~~~~~~l~~C~H~fh~~Ci~~w~~-------~~~~~CP~CR 95 (99)
.+..|.+|...-.. ++.+...-.|...||..|+..-+. ...-.||.|+
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~ 70 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCT 70 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCcccc
Confidence 44579999986432 234444557889999999875432 1223588774
No 138
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=84.27 E-value=0.77 Score=27.28 Aligned_cols=33 Identities=18% Similarity=0.428 Sum_probs=24.6
Q ss_pred ccccccccccccccC-CeeeEecCCCCcccHHHH
Q 037626 48 VEEICSICLMEFEKE-DVVSRLTRCCHLFHADCI 80 (99)
Q Consensus 48 ~~~~C~IC~~~~~~~-~~~~~l~~C~H~fh~~Ci 80 (99)
.+..|.+|..+|.-- +.-.....|+|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 567899999987532 223355689999999997
No 139
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=84.14 E-value=0.46 Score=23.45 Aligned_cols=46 Identities=26% Similarity=0.716 Sum_probs=29.9
Q ss_pred cccccccccccccccCCeeeEecCCCCcccHHHHHHHHhc---CCCcCccCCC
Q 037626 47 KVEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDC---NQFTCPVCRS 96 (99)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~---~~~~CP~CR~ 96 (99)
..+..|.+|.+. + .+...-.|...||..|+..-+.. +.-.||.|+.
T Consensus 3 ~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 3 IHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCCSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 346679999874 2 33344478889999999853331 2235888853
No 140
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=84.05 E-value=1 Score=22.92 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=18.3
Q ss_pred cccccccccccccCCeeeEecCCCCcccHHH
Q 037626 49 EEICSICLMEFEKEDVVSRLTRCCHLFHADC 79 (99)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~C 79 (99)
...|+.|-+.+.+.+.+. .-+..||.+|
T Consensus 9 ~~~C~~C~~~I~~~~~v~---a~~~~~H~~C 36 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS---SLGKDWHKFC 36 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE---ETTEEEETTT
T ss_pred CCCCcCCCCEeECCeEEE---ECCeEeeCCC
Confidence 346888888887655442 2456777776
No 141
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=83.97 E-value=0.5 Score=26.07 Aligned_cols=11 Identities=27% Similarity=1.090 Sum_probs=10.3
Q ss_pred ccHHHHHHHHh
Q 037626 75 FHADCIERWLD 85 (99)
Q Consensus 75 fh~~Ci~~w~~ 85 (99)
||+.|+..|..
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 142
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=83.84 E-value=1.2 Score=22.93 Aligned_cols=45 Identities=18% Similarity=0.600 Sum_probs=29.3
Q ss_pred ccccccccccCCeeeEecCCCCcccHHHHHHHHh----cCCCcCccCCC
Q 037626 52 CSICLMEFEKEDVVSRLTRCCHLFHADCIERWLD----CNQFTCPVCRS 96 (99)
Q Consensus 52 C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~----~~~~~CP~CR~ 96 (99)
--||..++..+...+..-.|.--||..|+.---. .....||.|+.
T Consensus 12 yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~ 60 (75)
T 3kqi_A 12 YCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEK 60 (75)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHH
T ss_pred EEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcc
Confidence 3489887654444445557888899999954321 13457998853
No 143
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=83.82 E-value=1.8 Score=29.41 Aligned_cols=47 Identities=23% Similarity=0.398 Sum_probs=29.7
Q ss_pred cccccccccccccCCeeeEecCCCCc--ccHHHHHHHHh-cCCCcCccCCCCC
Q 037626 49 EEICSICLMEFEKEDVVSRLTRCCHL--FHADCIERWLD-CNQFTCPVCRSFF 98 (99)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~l~~C~H~--fh~~Ci~~w~~-~~~~~CP~CR~~~ 98 (99)
...||+=...+..| + +-..|.|. |-..=+..... ...-.||+|.+.+
T Consensus 249 SL~CPlS~~ri~~P--v-Rg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 249 SLQCPISYTRMKYP--S-KSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp ESBCTTTSSBCSSE--E-EETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBC
T ss_pred eecCCCcccccccc--C-cCCcCCCcceECHHHHHHHhhcCCceeCCCCCccc
Confidence 34699888887765 3 33369998 54443333332 3445799998754
No 144
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=83.73 E-value=0.52 Score=25.96 Aligned_cols=11 Identities=36% Similarity=1.195 Sum_probs=10.3
Q ss_pred ccHHHHHHHHh
Q 037626 75 FHADCIERWLD 85 (99)
Q Consensus 75 fh~~Ci~~w~~ 85 (99)
||+.|+..|..
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 145
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=83.65 E-value=0.23 Score=24.97 Aligned_cols=45 Identities=24% Similarity=0.647 Sum_probs=26.9
Q ss_pred cccccccccccccccCCeeeEecC--CC-CcccHHHHHHHHhc---CCCcCccCCC
Q 037626 47 KVEEICSICLMEFEKEDVVSRLTR--CC-HLFHADCIERWLDC---NQFTCPVCRS 96 (99)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~l~~--C~-H~fh~~Ci~~w~~~---~~~~CP~CR~ 96 (99)
.+...| +|.... .++ .+..-. |. ..||..|+. +.. ++-.||.|+.
T Consensus 9 ~e~~yC-~C~~~~-~g~-MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 9 NEPTYC-LCNQVS-YGE-MIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp -CCEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCCcEE-ECCCCC-CCC-eeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 344557 898863 332 323334 54 789999987 222 3346999864
No 146
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=83.53 E-value=0.51 Score=24.08 Aligned_cols=40 Identities=8% Similarity=0.022 Sum_probs=21.7
Q ss_pred cccccccccccCCeeeEecCCCCcccH-HHHHHHHhcCCCcCccCCC
Q 037626 51 ICSICLMEFEKEDVVSRLTRCCHLFHA-DCIERWLDCNQFTCPVCRS 96 (99)
Q Consensus 51 ~C~IC~~~~~~~~~~~~l~~C~H~fh~-~Ci~~w~~~~~~~CP~CR~ 96 (99)
.|..|...+...... . .=|..||. .|..+.+. ..|-.|..
T Consensus 29 ~C~~C~~~L~~~~~~--~-~~g~~yC~~~cy~~~f~---~~C~~C~~ 69 (76)
T 1iml_A 29 KCEKCGKTLTSGGHA--E-HEGKPYCNHPCYSAMFG---PKGFGRGG 69 (76)
T ss_dssp BCTTTCCBCCTTTEE--E-ETTEEEETTTHHHHHSS---CCCSSCCC
T ss_pred CccccCccCCCCceE--C-cCCeEeeCHHHHHHHhC---ccCCCcCC
Confidence 577777776654321 1 23556777 57655332 25666654
No 147
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=83.12 E-value=0.18 Score=28.12 Aligned_cols=25 Identities=24% Similarity=0.703 Sum_probs=15.6
Q ss_pred ecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 68 LTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 68 l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
...||+.|. +. +. ....||.|+...
T Consensus 70 C~~CG~~F~----~~-~~-kPsrCP~CkSe~ 94 (105)
T 2gmg_A 70 CRKCGFVFK----AE-IN-IPSRCPKCKSEW 94 (105)
T ss_dssp BTTTCCBCC----CC-SS-CCSSCSSSCCCC
T ss_pred hhhCcCeec----cc-CC-CCCCCcCCCCCc
Confidence 347999991 11 11 334799998753
No 148
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=82.72 E-value=1.2 Score=22.60 Aligned_cols=29 Identities=21% Similarity=0.527 Sum_probs=17.5
Q ss_pred cccccccccccccCCeeeEecCCCCcccHHH
Q 037626 49 EEICSICLMEFEKEDVVSRLTRCCHLFHADC 79 (99)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~C 79 (99)
...|+-|.+.+...+.+... =|..||.+|
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C 39 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNS--NGELYHEQC 39 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEE--TTEEECTTT
T ss_pred CCCchhcCCccCCCceEEEe--CccEecccc
Confidence 45688888887654433222 355677666
No 149
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=82.45 E-value=1.4 Score=21.85 Aligned_cols=10 Identities=20% Similarity=0.418 Sum_probs=5.2
Q ss_pred cccccccccc
Q 037626 51 ICSICLMEFE 60 (99)
Q Consensus 51 ~C~IC~~~~~ 60 (99)
.|+-|.+.+.
T Consensus 7 ~C~~C~~~I~ 16 (70)
T 2d8z_A 7 GCVQCKKPIT 16 (70)
T ss_dssp BCSSSCCBCC
T ss_pred CCcccCCeec
Confidence 3555555554
No 150
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=82.24 E-value=2.3 Score=28.80 Aligned_cols=47 Identities=26% Similarity=0.504 Sum_probs=30.0
Q ss_pred cccccccccccccCCeeeEecCCCCc--ccHHHHHHHHh-cCCCcCccCCCCC
Q 037626 49 EEICSICLMEFEKEDVVSRLTRCCHL--FHADCIERWLD-CNQFTCPVCRSFF 98 (99)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~l~~C~H~--fh~~Ci~~w~~-~~~~~CP~CR~~~ 98 (99)
...||+=...+..| . +-..|.|. |-..=+-.... ...-.||+|.+.+
T Consensus 215 SL~CPlS~~ri~~P--~-Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~ 264 (360)
T 4fo9_A 215 SLMCPLGKMRLTIP--C-RAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKA 264 (360)
T ss_dssp ESBCTTTCSBCSSE--E-EETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBC
T ss_pred eeeCCCccceeccC--C-cCCCCCCCccCCHHHHHHHHhhCCCeECCCCCccc
Confidence 44699888887665 3 33369998 55444443333 3445799998764
No 151
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=82.15 E-value=1.6 Score=26.11 Aligned_cols=36 Identities=22% Similarity=0.595 Sum_probs=24.9
Q ss_pred CcccccccccccccccCCeeeEec--CCCCcccHHHHHHHHh
Q 037626 46 SKVEEICSICLMEFEKEDVVSRLT--RCCHLFHADCIERWLD 85 (99)
Q Consensus 46 ~~~~~~C~IC~~~~~~~~~~~~l~--~C~H~fh~~Ci~~w~~ 85 (99)
+..+..|.||-+. ..+.... .|...||.+||..++.
T Consensus 76 DG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 76 DGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp TSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTC
T ss_pred CCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcC
Confidence 3445579998764 3333333 5888999999999875
No 152
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=81.30 E-value=1.8 Score=21.60 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=13.0
Q ss_pred cccccccccccCCeeeEecCCCCcccHHH
Q 037626 51 ICSICLMEFEKEDVVSRLTRCCHLFHADC 79 (99)
Q Consensus 51 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~C 79 (99)
.|.-|.+.+.+.+.. +..=+..||.+|
T Consensus 7 ~C~~C~~~I~~~~~~--~~a~~~~~H~~C 33 (72)
T 1wyh_A 7 GCSACGETVMPGSRK--LEYGGQTWHEHC 33 (72)
T ss_dssp BCSSSCCBCCSSSCE--ECSTTCCEETTT
T ss_pred CCccCCCccccCccE--EEECccccCccc
Confidence 466666665543221 112345566555
No 153
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=80.83 E-value=1.7 Score=21.36 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=15.0
Q ss_pred ccccccccccccCCeeeEecCCCCcccHHH
Q 037626 50 EICSICLMEFEKEDVVSRLTRCCHLFHADC 79 (99)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~C 79 (99)
..|+-|.+.+. ++. +..=|..||.+|
T Consensus 6 ~~C~~C~~~I~-~~~---~~a~~~~~H~~C 31 (66)
T 1nyp_A 6 PICGACRRPIE-GRV---VNAMGKQWHVEH 31 (66)
T ss_dssp CEETTTTEECC-SCE---ECCTTSBEETTT
T ss_pred CCCcccCCEec-ceE---EEECccccccCc
Confidence 45777777766 322 223456677666
No 154
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=80.77 E-value=0.2 Score=22.17 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=12.1
Q ss_pred ccccccccccccccCCe
Q 037626 48 VEEICSICLMEFEKEDV 64 (99)
Q Consensus 48 ~~~~C~IC~~~~~~~~~ 64 (99)
+.-.||+|+..+.+++.
T Consensus 4 EGFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADE 20 (34)
T ss_dssp EEEECTTTCCEESSHHH
T ss_pred cccCCcHHHHHcCCHHH
Confidence 34579999988876543
No 155
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=80.76 E-value=0.21 Score=26.25 Aligned_cols=45 Identities=27% Similarity=0.609 Sum_probs=27.5
Q ss_pred cccccccccccCCeeeEecCCCCcccHHHHHHHHhc---CC-CcCccCCC
Q 037626 51 ICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDC---NQ-FTCPVCRS 96 (99)
Q Consensus 51 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~---~~-~~CP~CR~ 96 (99)
.|.+|...-.. +.+...-.|...||..|+..-+.. .. =.||.|++
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 46666655332 333344478899999999864432 22 36999976
No 156
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=80.49 E-value=1.2 Score=23.51 Aligned_cols=27 Identities=11% Similarity=0.290 Sum_probs=17.3
Q ss_pred cccccccccccccCCeeeEecCCCCcccHHH
Q 037626 49 EEICSICLMEFEKEDVVSRLTRCCHLFHADC 79 (99)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~C 79 (99)
...|+-|-+.+.. +.+ ..-+..||.+|
T Consensus 25 ~~~C~~C~~~I~~-~~v---~a~~~~~H~~C 51 (90)
T 2dar_A 25 TPMCAHCNQVIRG-PFL---VALGKSWHPEE 51 (90)
T ss_dssp CCBBSSSCCBCCS-CEE---EETTEEECTTT
T ss_pred CCCCccCCCEecc-eEE---EECCccccccC
Confidence 3469999888853 222 23467788777
No 157
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=80.29 E-value=0.16 Score=24.46 Aligned_cols=42 Identities=21% Similarity=0.544 Sum_probs=26.2
Q ss_pred ccccccccCCeeeEecCCCCcccHHHHHHHHh--cCCCcCccCCC
Q 037626 54 ICLMEFEKEDVVSRLTRCCHLFHADCIERWLD--CNQFTCPVCRS 96 (99)
Q Consensus 54 IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~--~~~~~CP~CR~ 96 (99)
||..+.. +...+..-.|+.-||..|+.--.. .....||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6766544 323334446888899999864322 14457999875
No 158
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=80.18 E-value=0.86 Score=19.38 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=19.5
Q ss_pred ccccccccccccCCeeeEecCCCCcccHHH
Q 037626 50 EICSICLMEFEKEDVVSRLTRCCHLFHADC 79 (99)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~C 79 (99)
+.|+.|....-..+.+. .=|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~---~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN---CLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCC---SSSSCCCGGG
T ss_pred CcCCccCCEEecceeEE---ECCeEecccC
Confidence 46999998876665443 3577899887
No 159
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=79.92 E-value=0.7 Score=25.41 Aligned_cols=41 Identities=22% Similarity=0.419 Sum_probs=23.6
Q ss_pred ccccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 48 VEEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
.+..||.|..++.... ++.+|..|-.... ....||-|.+++
T Consensus 31 M~~~CP~Cq~eL~~~g--------~~~hC~~C~~~f~--~~a~CPdC~q~L 71 (101)
T 2jne_A 31 MELHCPQCQHVLDQDN--------GHARCRSCGEFIE--MKALCPDCHQPL 71 (101)
T ss_dssp CCCBCSSSCSBEEEET--------TEEEETTTCCEEE--EEEECTTTCSBC
T ss_pred ccccCccCCCcceecC--------CEEECccccchhh--ccccCcchhhHH
Confidence 3468999998876432 2223444533321 223688887764
No 160
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=79.69 E-value=1.1 Score=22.82 Aligned_cols=32 Identities=25% Similarity=0.499 Sum_probs=23.1
Q ss_pred cccccccccccccccCCeeeEecCC-CCcccHHHHHHH
Q 037626 47 KVEEICSICLMEFEKEDVVSRLTRC-CHLFHADCIERW 83 (99)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~l~~C-~H~fh~~Ci~~w 83 (99)
++..-|.||.++-. + +...| |-.||..|.++.
T Consensus 6 ee~pWC~ICneDAt----l-rC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNEDAT----L-RCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSCCC----E-EETTTTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCCCe----E-EecCCCCceehHHHHHHH
Confidence 34446999988822 2 45578 789999998875
No 161
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=79.00 E-value=0.38 Score=30.49 Aligned_cols=46 Identities=26% Similarity=0.569 Sum_probs=25.9
Q ss_pred cccccccccccCCeeeEecCCCCcccHHHHHHHHhc---C-CCcCccCCCC
Q 037626 51 ICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDC---N-QFTCPVCRSF 97 (99)
Q Consensus 51 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~---~-~~~CP~CR~~ 97 (99)
.|.+|...-. ++.+...-.|...||..|+..=+.. + .=.||.|+..
T Consensus 176 ~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 5888876532 2333344478899999999853332 2 2359999753
No 162
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=78.78 E-value=0.11 Score=25.97 Aligned_cols=37 Identities=22% Similarity=0.520 Sum_probs=25.9
Q ss_pred ccccccccccccCCeeeEec--C--CCCcccHHHHHHHHhc
Q 037626 50 EICSICLMEFEKEDVVSRLT--R--CCHLFHADCIERWLDC 86 (99)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~l~--~--C~H~fh~~Ci~~w~~~ 86 (99)
..||-|...++..+.-..+. . |++.||..|...|...
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 46888888876554322222 3 8999999999998764
No 163
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=78.70 E-value=1.8 Score=22.17 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=17.9
Q ss_pred ccccccccccccCCeeeEecCCCCcccHHH
Q 037626 50 EICSICLMEFEKEDVVSRLTRCCHLFHADC 79 (99)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~C 79 (99)
..|+.|.+.+.+.+.... .=+..||.+|
T Consensus 16 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~C 43 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVE--YKGTVWHKDC 43 (82)
T ss_dssp CBCSSSCCBCCSSSCEEE--CSSCEEETTT
T ss_pred CcCccCCcccccCceEEE--ECcccccccc
Confidence 468888888776554322 2466777777
No 164
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=77.68 E-value=1.2 Score=22.13 Aligned_cols=10 Identities=20% Similarity=0.149 Sum_probs=5.3
Q ss_pred cccccccccc
Q 037626 51 ICSICLMEFE 60 (99)
Q Consensus 51 ~C~IC~~~~~ 60 (99)
.|.-|.+.+.
T Consensus 7 ~C~~C~~~I~ 16 (70)
T 2d8x_A 7 GCHQCGEFII 16 (70)
T ss_dssp BCSSSCCBCC
T ss_pred cCccCCCEec
Confidence 4555555554
No 165
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=77.64 E-value=1.9 Score=21.47 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=13.0
Q ss_pred cccccccccccCCeeeEecCCCCcccHHH
Q 037626 51 ICSICLMEFEKEDVVSRLTRCCHLFHADC 79 (99)
Q Consensus 51 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~C 79 (99)
.|+.|.+.+.+.+..... =+..||.+|
T Consensus 7 ~C~~C~~~I~~~~~~~~a--~~~~~H~~C 33 (72)
T 1x4k_A 7 GCQECKKTIMPGTRKMEY--KGSSWHETC 33 (72)
T ss_dssp CBSSSCCCCCSSSCEEEE--TTEEEETTT
T ss_pred CCccCCCcccCCceEEEE--CcCeecccC
Confidence 466666666544322111 344555555
No 166
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=77.60 E-value=2.4 Score=21.09 Aligned_cols=32 Identities=16% Similarity=0.362 Sum_probs=15.2
Q ss_pred cccccccccccCCeeeEecCCCCcccHHHHHHHHh
Q 037626 51 ICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLD 85 (99)
Q Consensus 51 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~ 85 (99)
.|..|...+..... .. .=+..||..|..+.+.
T Consensus 35 ~C~~C~~~L~~~~~--~~-~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 35 VCSTCRAQLRGQHF--YA-VERRAYCEGCYVATLE 66 (72)
T ss_dssp BCSSSCCBCTTSCE--EE-SSSCEEEHHHHHHHHH
T ss_pred cccccCCcCCcCcC--Ee-eCCeEECHHHHHHHHc
Confidence 35555555532211 11 2345566666665554
No 167
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=77.39 E-value=2.3 Score=21.49 Aligned_cols=10 Identities=20% Similarity=0.747 Sum_probs=4.9
Q ss_pred CcccHHHHHH
Q 037626 73 HLFHADCIER 82 (99)
Q Consensus 73 H~fh~~Ci~~ 82 (99)
..||..|...
T Consensus 53 ~~yC~~C~~~ 62 (73)
T 1wig_A 53 SIWHPACRQA 62 (73)
T ss_dssp EEECTTHHHH
T ss_pred EEEChHHChH
Confidence 3455555544
No 168
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=76.23 E-value=5.1 Score=20.69 Aligned_cols=47 Identities=23% Similarity=0.544 Sum_probs=29.4
Q ss_pred ccccccccccccccCCeeeEec--CCCCcccHHHHHHHHhc--------CCCcCccCCC
Q 037626 48 VEEICSICLMEFEKEDVVSRLT--RCCHLFHADCIERWLDC--------NQFTCPVCRS 96 (99)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~l~--~C~H~fh~~Ci~~w~~~--------~~~~CP~CR~ 96 (99)
....| ||......+. .+..- .|..-||..|+.---.. .+..||.|+.
T Consensus 15 ~~~~C-iC~~~~~~g~-MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~ 71 (78)
T 1wew_A 15 IKVRC-VCGNSLETDS-MIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRL 71 (78)
T ss_dssp CCCCC-SSCCCCCCSC-EEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHH
T ss_pred CCEEe-ECCCcCCCCC-EEEECCccCCccccCEEEccccccccccccCCCCEECCCCCc
Confidence 34468 8988744443 33444 68889999998532111 2457999964
No 169
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=75.71 E-value=2.2 Score=21.28 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=14.4
Q ss_pred cccccccccccc--CCeeeEecCCCCcccHHH
Q 037626 50 EICSICLMEFEK--EDVVSRLTRCCHLFHADC 79 (99)
Q Consensus 50 ~~C~IC~~~~~~--~~~~~~l~~C~H~fh~~C 79 (99)
..|+-|-+.+.. ++.. +..-+..||.+|
T Consensus 6 ~~C~~C~~~I~~~~~~~~--~~a~~~~wH~~C 35 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKY--ISFEERQWHNDC 35 (72)
T ss_dssp CSBTTTTBCCCCSSSCSC--EECSSCEECTTT
T ss_pred CCCcCCCccccCCCCcce--EEECCcccCccc
Confidence 347777776664 2222 112455666666
No 170
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=75.18 E-value=2.5 Score=28.90 Aligned_cols=36 Identities=17% Similarity=0.507 Sum_probs=24.9
Q ss_pred CcccccccccccccccCCeeeEec--CCCCcccHHHHHHHHh
Q 037626 46 SKVEEICSICLMEFEKEDVVSRLT--RCCHLFHADCIERWLD 85 (99)
Q Consensus 46 ~~~~~~C~IC~~~~~~~~~~~~l~--~C~H~fh~~Ci~~w~~ 85 (99)
+..+..|.+|-+. ..+...- .|...||.+||+..+.
T Consensus 90 DG~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g 127 (386)
T 2pv0_B 90 DGYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVG 127 (386)
T ss_dssp SSSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTC
T ss_pred CCCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcC
Confidence 3445568888764 2333333 7889999999999873
No 171
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=74.98 E-value=1.4 Score=21.83 Aligned_cols=12 Identities=17% Similarity=0.625 Sum_probs=5.4
Q ss_pred CCcccHHHHHHH
Q 037626 72 CHLFHADCIERW 83 (99)
Q Consensus 72 ~H~fh~~Ci~~w 83 (99)
+..||..|..+.
T Consensus 51 ~~~yC~~cy~~~ 62 (69)
T 2cur_A 51 DQYYCVDCYKNF 62 (69)
T ss_dssp SCEEEHHHHHHH
T ss_pred CEEECHHHhHHH
Confidence 334455554443
No 172
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=74.92 E-value=1.7 Score=22.03 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=16.4
Q ss_pred cccccccccccc--CCeeeEecCCCCcccHHH
Q 037626 50 EICSICLMEFEK--EDVVSRLTRCCHLFHADC 79 (99)
Q Consensus 50 ~~C~IC~~~~~~--~~~~~~l~~C~H~fh~~C 79 (99)
..|+-|-+++.+ +..... .-+..||.+|
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~--a~~~~wH~~C 35 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFIC--FQDSQWHSEC 35 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEE--ETTEEEEGGG
T ss_pred CCCccCCCcccCCCCceeEE--ECCcccCccc
Confidence 458888887774 222211 2456677777
No 173
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=73.93 E-value=1.6 Score=23.19 Aligned_cols=13 Identities=23% Similarity=0.749 Sum_probs=7.6
Q ss_pred ccccccccccccC
Q 037626 50 EICSICLMEFEKE 62 (99)
Q Consensus 50 ~~C~IC~~~~~~~ 62 (99)
..||.|..++...
T Consensus 3 ~~CP~C~~~l~~~ 15 (81)
T 2jrp_A 3 ITCPVCHHALERN 15 (81)
T ss_dssp CCCSSSCSCCEEC
T ss_pred CCCCCCCCccccC
Confidence 3567776665543
No 174
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=73.90 E-value=0.18 Score=26.64 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=22.2
Q ss_pred cccccc--cccccccC--CeeeEec-----CCCCcccHHHHHHH
Q 037626 49 EEICSI--CLMEFEKE--DVVSRLT-----RCCHLFHADCIERW 83 (99)
Q Consensus 49 ~~~C~I--C~~~~~~~--~~~~~l~-----~C~H~fh~~Ci~~w 83 (99)
..-||- |...+..+ ...+..+ .|||.||..|-..|
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAY 68 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEEC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccc
Confidence 345776 65554322 2223454 69999999998887
No 175
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=73.27 E-value=4.2 Score=19.98 Aligned_cols=30 Identities=20% Similarity=0.521 Sum_probs=19.9
Q ss_pred cccccccccccccCCeeeEecCCCCcccHHHH
Q 037626 49 EEICSICLMEFEKEDVVSRLTRCCHLFHADCI 80 (99)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci 80 (99)
...|.-|...+...+.+... =|..||.+|.
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF 40 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCF 40 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEE--TTEEEETTTS
T ss_pred CccchhcCccccCCceEEEe--CcCeeCcCCC
Confidence 34699999988876654322 4566887773
No 176
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=73.20 E-value=2.2 Score=21.84 Aligned_cols=10 Identities=20% Similarity=0.624 Sum_probs=5.3
Q ss_pred cccccccccc
Q 037626 51 ICSICLMEFE 60 (99)
Q Consensus 51 ~C~IC~~~~~ 60 (99)
.|+.|.+.+.
T Consensus 17 ~C~~C~~~I~ 26 (81)
T 1x6a_A 17 FCHGCSLLMT 26 (81)
T ss_dssp BCTTTCCBCC
T ss_pred cCccCCCCcC
Confidence 3555555554
No 177
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=71.60 E-value=0.95 Score=23.33 Aligned_cols=14 Identities=14% Similarity=0.380 Sum_probs=7.6
Q ss_pred ccccccccccccCC
Q 037626 50 EICSICLMEFEKED 63 (99)
Q Consensus 50 ~~C~IC~~~~~~~~ 63 (99)
..|+.|.+.+.+.+
T Consensus 8 ~~C~~C~~~I~~~~ 21 (81)
T 1a7i_A 8 NKCGACGRTVYHAE 21 (81)
T ss_dssp CBCSSSCCBCSSTT
T ss_pred CcCcCcCccccCce
Confidence 34666666654443
No 178
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=70.99 E-value=4 Score=22.98 Aligned_cols=37 Identities=16% Similarity=0.433 Sum_probs=24.2
Q ss_pred cccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCC
Q 037626 49 EEICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSF 97 (99)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~ 97 (99)
...|+-|-+.+.....+. .-+..||.+| ++|-.|+.+
T Consensus 61 ~~~C~~C~~~I~~~~~v~---a~~~~wH~~C---------F~C~~C~~~ 97 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLY---AMDSYWHSRC---------LKCSSCQAQ 97 (123)
T ss_dssp CSBBSSSSSBCCSSSEEE---ETTEEEETTT---------SBCTTTCCB
T ss_pred CCcCcCCCCCcCCcEEEE---eCCcEEcccc---------cCcCcCCCc
Confidence 347999999987553332 3567788877 356666554
No 179
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.23 E-value=2.7 Score=21.38 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=13.6
Q ss_pred ccccccccccccCCeeeEecCCCCcccHHH
Q 037626 50 EICSICLMEFEKEDVVSRLTRCCHLFHADC 79 (99)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~C 79 (99)
..|+-|.+.+.+. . +..=+..||.+|
T Consensus 16 ~~C~~C~~~I~~~-~---v~a~~~~~H~~C 41 (80)
T 2cuq_A 16 PRCARCSKTLTQG-G---VTYRDQPWHREC 41 (80)
T ss_dssp CCCTTTCCCCCSC-C---EESSSSEECTTT
T ss_pred CcCCCCCCEecCc-E---EEECCchhhhhh
Confidence 3577776666542 1 112455666655
No 180
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.14 E-value=2 Score=22.08 Aligned_cols=26 Identities=19% Similarity=0.566 Sum_probs=13.0
Q ss_pred ccccccccccccCCeeeEecCCCCcccHHH
Q 037626 50 EICSICLMEFEKEDVVSRLTRCCHLFHADC 79 (99)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~C 79 (99)
..|+-|.+.+.+. .+ ..-+..||.+|
T Consensus 16 ~~C~~C~~~I~~~-~~---~a~~~~~H~~C 41 (81)
T 2dlo_A 16 EKCATCSQPILDR-IL---RAMGKAYHPGC 41 (81)
T ss_dssp CBCTTTCCBCCSC-CE---EETTEEECTTT
T ss_pred CccccCCCeecce-eE---EECCccccHHh
Confidence 4566676666522 11 12345566555
No 181
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.43 E-value=2.2 Score=21.89 Aligned_cols=26 Identities=31% Similarity=0.568 Sum_probs=16.3
Q ss_pred ccccccccccccCCeeeEecCCCCcccHHH
Q 037626 50 EICSICLMEFEKEDVVSRLTRCCHLFHADC 79 (99)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~C 79 (99)
..|+-|.+.+.. +.+ ..-+..||.+|
T Consensus 16 ~~C~~C~~~I~~-~~v---~a~~~~wH~~C 41 (81)
T 1v6g_A 16 TRCFSCDQFIEG-EVV---SALGKTYHPDC 41 (81)
T ss_dssp CBCTTTCCBCCS-CCE---EETTEEECTTT
T ss_pred CcCccccCEecc-ceE---EECCceeCccC
Confidence 368888888763 222 12466788777
No 182
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=67.13 E-value=4.2 Score=20.19 Aligned_cols=39 Identities=26% Similarity=0.384 Sum_probs=21.9
Q ss_pred CCCcccccccccccc-cccCCeeeEecCCCCcccHHHHHHH
Q 037626 44 EDSKVEEICSICLME-FEKEDVVSRLTRCCHLFHADCIERW 83 (99)
Q Consensus 44 ~~~~~~~~C~IC~~~-~~~~~~~~~l~~C~H~fh~~Ci~~w 83 (99)
+...+...|.||+.. |.++- -....-|.-.||..|-..|
T Consensus 4 ~~~~d~~~C~iC~KTKFADG~-Gh~C~yCk~r~CaRCGg~v 43 (62)
T 2a20_A 4 EQKGDAPTCGICHKTKFADGC-GHNCSYCQTKFCARCGGRV 43 (62)
T ss_dssp CCSSCCCCCSSSSCSCCCSSC-CEEBTTTCCEECTTSEEEE
T ss_pred cccCCcchhhhhccceeccCC-CccccccCCeeecccCCEe
Confidence 344556689999985 43331 1122245556677775554
No 183
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=66.88 E-value=2.7 Score=23.51 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=16.4
Q ss_pred cccccccccccCCeeeEecCCCCcccHHHHHHHHh
Q 037626 51 ICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLD 85 (99)
Q Consensus 51 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~ 85 (99)
.|..|...+..++.. .. .=+..||..|..+.+.
T Consensus 38 ~C~~C~~~L~~g~~f-~~-~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 38 KCAACQKHFSVGDRY-LL-INSDIVCEQDIYEWTK 70 (123)
T ss_dssp BCTTTCCBCCTTCEE-EE-CSSSEEEGGGHHHHHH
T ss_pred ccccCCCCCCCCCcE-Ee-eCCEEEcHHHhHHHhc
Confidence 456666665433322 11 1355566666665543
No 184
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.74 E-value=3.7 Score=21.45 Aligned_cols=35 Identities=20% Similarity=0.438 Sum_probs=24.1
Q ss_pred CcccccccccccccccC-CeeeEecCCCCcccHHHH
Q 037626 46 SKVEEICSICLMEFEKE-DVVSRLTRCCHLFHADCI 80 (99)
Q Consensus 46 ~~~~~~C~IC~~~~~~~-~~~~~l~~C~H~fh~~Ci 80 (99)
...+..|+.|.+++.-- +.-.....|.|..|.+|-
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 44556899999998521 122355689999998883
No 185
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.59 E-value=2.6 Score=21.45 Aligned_cols=26 Identities=15% Similarity=0.432 Sum_probs=13.6
Q ss_pred ccccccccccccCCeeeEecCCCCcccHHH
Q 037626 50 EICSICLMEFEKEDVVSRLTRCCHLFHADC 79 (99)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~C 79 (99)
..|+-|.+.+.+. .+ ..=+..||.+|
T Consensus 16 ~~C~~C~~~I~~~-~v---~a~~~~~H~~C 41 (80)
T 1x3h_A 16 PKCGGCNRPVLEN-YL---SAMDTVWHPEC 41 (80)
T ss_dssp CBCTTTCCBCCSS-CE---EETTEEECTTT
T ss_pred CccccCCCeecce-eE---EECCCeEecCc
Confidence 3577777766542 22 12345566655
No 186
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=64.77 E-value=1.6 Score=18.29 Aligned_cols=8 Identities=38% Similarity=1.057 Sum_probs=5.5
Q ss_pred cCccCCCC
Q 037626 90 TCPVCRSF 97 (99)
Q Consensus 90 ~CP~CR~~ 97 (99)
.||+|+..
T Consensus 5 ~CpvCk~q 12 (28)
T 2jvx_A 5 CCPKCQYQ 12 (28)
T ss_dssp ECTTSSCE
T ss_pred cCcccccc
Confidence 67777754
No 187
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=64.39 E-value=0.38 Score=25.61 Aligned_cols=32 Identities=25% Similarity=0.725 Sum_probs=21.1
Q ss_pred ccccccccccC--CeeeEecCCCCcccHHHHHHH
Q 037626 52 CSICLMEFEKE--DVVSRLTRCCHLFHADCIERW 83 (99)
Q Consensus 52 C~IC~~~~~~~--~~~~~l~~C~H~fh~~Ci~~w 83 (99)
||=|-..+... ...+..+.|++.||..|-..|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 77665544321 222355579999999998887
No 188
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=62.92 E-value=3.3 Score=20.22 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=16.8
Q ss_pred cccccccccccccCCeeeEec--CCCCcc
Q 037626 49 EEICSICLMEFEKEDVVSRLT--RCCHLF 75 (99)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~l~--~C~H~f 75 (99)
-..|+.|..++...+..-+.. .||+.|
T Consensus 10 iL~CP~c~~~L~~~~~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 10 ILACPACHAPLEERDAELICTGQDCGLAY 38 (56)
T ss_dssp SCCCSSSCSCEEEETTEEEECSSSCCCEE
T ss_pred heeCCCCCCcceecCCEEEcCCcCCCcEE
Confidence 347999999865443333444 577765
No 189
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=62.87 E-value=4.7 Score=22.57 Aligned_cols=24 Identities=25% Similarity=0.722 Sum_probs=16.1
Q ss_pred EecCCCCcccHHHHHHHHhcCCC-cCccCCCC
Q 037626 67 RLTRCCHLFHADCIERWLDCNQF-TCPVCRSF 97 (99)
Q Consensus 67 ~l~~C~H~fh~~Ci~~w~~~~~~-~CP~CR~~ 97 (99)
...+|||.|-.+ .... .||.|..+
T Consensus 75 ~C~~CG~~~e~~-------~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 75 ECKDCSHVFKPN-------ALDYGVCEKCHSK 99 (119)
T ss_dssp ECSSSSCEECSC-------CSTTCCCSSSSSC
T ss_pred EcCCCCCEEeCC-------CCCCCcCccccCC
Confidence 455789888652 2445 79999765
No 190
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=62.41 E-value=6.4 Score=21.90 Aligned_cols=45 Identities=11% Similarity=0.044 Sum_probs=25.8
Q ss_pred cccccccccccC-CeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 51 ICSICLMEFEKE-DVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 51 ~C~IC~~~~~~~-~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
.|..|...+.+. ... . ..=|..||..|..+.+..+ ..|-.|.++|
T Consensus 34 ~C~~C~~~L~~~~~~~-~-~~~g~~yC~~cy~~~f~~~-~~C~~C~~~I 79 (122)
T 1m3v_A 34 KCSSCQAQLGDIGTSS-Y-TKSGMILCRNDYIRLFGNS-GAGGSGGHMG 79 (122)
T ss_dssp CCSSSCCCTTTSEECC-E-EETTEEECHHHHHHHHCCC-CSSSCSSCCS
T ss_pred CcCCCCCcccccCCeE-E-EECCeeecHHHHHHHcCCC-CccccCCCCc
Confidence 467776666421 111 1 1235567888877765522 2688887765
No 191
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=61.07 E-value=8.4 Score=20.38 Aligned_cols=42 Identities=21% Similarity=0.454 Sum_probs=21.8
Q ss_pred cccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 51 ICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 51 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
.|..|...+...... . .=|..||..|..+. -...|..|.++|
T Consensus 35 ~C~~C~~~L~~~~~~--~-~~g~~yC~~cy~~~---~~~~C~~C~~~I 76 (101)
T 2cup_A 35 RCAKCLHPLANETFV--A-KDNKILCNKCTTRE---DSPKCKGCFKAI 76 (101)
T ss_dssp CCSSSCCCTTSSCCE--E-ETTEEECHHHHTTC---CCCBCSSSCCBC
T ss_pred cccccCCCCCcCeeE--C-cCCEEEChhHhhhh---cCCccccCCCcc
Confidence 356666665432111 1 13455676665432 223688887765
No 192
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=60.68 E-value=8.1 Score=21.17 Aligned_cols=14 Identities=7% Similarity=-0.251 Sum_probs=7.8
Q ss_pred CCcccHHHHHHHHh
Q 037626 72 CHLFHADCIERWLD 85 (99)
Q Consensus 72 ~H~fh~~Ci~~w~~ 85 (99)
|..||..|..+-+.
T Consensus 52 g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 52 GRKLCRRDYLRLGG 65 (114)
T ss_dssp TBCCCHHHHHHHHT
T ss_pred CeeechHHHHHHhC
Confidence 44566666655443
No 193
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=60.19 E-value=2.7 Score=22.66 Aligned_cols=47 Identities=19% Similarity=0.469 Sum_probs=25.8
Q ss_pred CCCcccccccccccccccCCeeeEecCCC---CcccHHHHHHHHhc---CCCcCcc-CC
Q 037626 44 EDSKVEEICSICLMEFEKEDVVSRLTRCC---HLFHADCIERWLDC---NQFTCPV-CR 95 (99)
Q Consensus 44 ~~~~~~~~C~IC~~~~~~~~~~~~l~~C~---H~fh~~Ci~~w~~~---~~~~CP~-CR 95 (99)
.+..+...| ||..... ++ .+..-.|. ..||..|+. +.. +.-.||. |+
T Consensus 21 ~~~~~~~yC-iC~~~~~-g~-MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 21 NNNQEEVYC-FCRNVSY-GP-MVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCK 74 (90)
T ss_dssp ---CCSCCS-TTTCCCS-SS-EECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHH
T ss_pred CCCCCCcEE-EeCCCCC-CC-EEEecCCCCccccCcCccCC--CCcCCCCCccCChhhc
Confidence 333444567 9987533 33 22333444 579999986 221 2346888 75
No 194
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=58.49 E-value=4.5 Score=20.32 Aligned_cols=38 Identities=21% Similarity=0.436 Sum_probs=23.1
Q ss_pred cccccccccccc---CCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 50 EICSICLMEFEK---EDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 50 ~~C~IC~~~~~~---~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
..|+-|.+.+.+ +..... .=+..||.+| .+|-.|+.++
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~--a~~~~~H~~C---------F~C~~C~~~L 56 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVA--YEGQSWHDYC---------FHCKKCSVNL 56 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEE--ETTEEEETTT---------CBCSSSCCBC
T ss_pred ccCcccCCcccCCCCCceeEE--ECcceeCccc---------CEehhcCCCC
Confidence 469999988875 222222 2466788877 3566665543
No 195
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=58.05 E-value=8.5 Score=27.05 Aligned_cols=46 Identities=20% Similarity=0.590 Sum_probs=30.4
Q ss_pred ccccccccccccCCeeeEecCCCCcccHHHHHHHHhc----CCCcCccCCC
Q 037626 50 EICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDC----NQFTCPVCRS 96 (99)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~----~~~~CP~CR~ 96 (99)
..| ||..+.+++...+..-.|.--||..|+.---.. ....||.|+.
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp EET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred eEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 346 999887644444456678888999998532211 2357999963
No 196
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=56.88 E-value=9.4 Score=22.90 Aligned_cols=27 Identities=26% Similarity=0.615 Sum_probs=13.3
Q ss_pred cccccccccccCCeeeEecCCCCcccHHH
Q 037626 51 ICSICLMEFEKEDVVSRLTRCCHLFHADC 79 (99)
Q Consensus 51 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~C 79 (99)
.|..|...+...+.+.. .-++.||.+|
T Consensus 71 ~C~~C~~~I~~~e~~i~--a~~~~~H~~C 97 (188)
T 1rut_X 71 ACSACGQSIPASELVMR--AQGNVYHLKC 97 (188)
T ss_dssp ECTTTCCEECTTSEEEE--ETTEEECGGG
T ss_pred ccccCCCccccCcEEEE--cCCCEEeCCC
Confidence 36666666554333211 2355566665
No 197
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=56.85 E-value=3.3 Score=24.43 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=14.7
Q ss_pred EecCCCCcccHHHHHHHHhcCCCcCccCCCC
Q 037626 67 RLTRCCHLFHADCIERWLDCNQFTCPVCRSF 97 (99)
Q Consensus 67 ~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~ 97 (99)
....|||.|-.. . ....||.|..+
T Consensus 134 ~C~~Cg~~~~~~------~-~~~~Cp~CG~~ 157 (165)
T 2lcq_A 134 VCIGCGRKFSTL------P-PGGVCPDCGSK 157 (165)
T ss_dssp EESSSCCEESSC------C-GGGBCTTTCCB
T ss_pred ECCCCCCcccCC------C-CCCcCCCCCCc
Confidence 455788888533 1 12268888765
No 198
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=56.75 E-value=2.8 Score=27.71 Aligned_cols=48 Identities=15% Similarity=0.328 Sum_probs=28.5
Q ss_pred cccccccccccccccCCeeeE-ecCCC--CcccHHHHHHHHhcCCCcCccCCC
Q 037626 47 KVEEICSICLMEFEKEDVVSR-LTRCC--HLFHADCIERWLDCNQFTCPVCRS 96 (99)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~-l~~C~--H~fh~~Ci~~w~~~~~~~CP~CR~ 96 (99)
.....||+|-..-... .++. -..=| +..|.-|-.+|-- .+..||.|-.
T Consensus 180 ~~~~~CPvCGs~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W~~-~R~~C~~Cg~ 230 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAG-MIRQGGKETGLRYLSCSLCACEWHY-VRIKCSHCEE 230 (309)
T ss_dssp TTCSSCTTTCCCEEEE-EEEC----CCEEEEEETTTCCEEEC-CTTSCSSSCC
T ss_pred ccCCCCCCCCCcCcee-EEeecCCCCCcEEEEeCCCCCEEee-cCcCCcCCCC
Confidence 5567899998875433 1110 00122 4567778778855 3448999964
No 199
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.03 E-value=8 Score=19.65 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=16.6
Q ss_pred ccccccccccccCCeeeEecCCCCcccHHH
Q 037626 50 EICSICLMEFEKEDVVSRLTRCCHLFHADC 79 (99)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~C 79 (99)
..|+-|.+.+..++.+ +..=+..||.+|
T Consensus 16 ~~C~~C~~~I~~~~~~--~~a~~~~~H~~C 43 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRE--LFYEDRHFHEGC 43 (82)
T ss_dssp CBCTTTCCBCCSSCCB--CCCSSCCCBTTT
T ss_pred CcCccCCCccccCcEE--EEeCCccccccC
Confidence 3688888887743322 112356677776
No 200
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=55.83 E-value=10 Score=21.11 Aligned_cols=9 Identities=22% Similarity=0.693 Sum_probs=4.1
Q ss_pred ccccccccc
Q 037626 52 CSICLMEFE 60 (99)
Q Consensus 52 C~IC~~~~~ 60 (99)
|..|.+.+.
T Consensus 69 C~~C~~~I~ 77 (131)
T 2xjy_A 69 CASCDKRIR 77 (131)
T ss_dssp CTTTCCEEC
T ss_pred hhhcCCccC
Confidence 444444443
No 201
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=54.28 E-value=4 Score=16.66 Aligned_cols=7 Identities=57% Similarity=1.697 Sum_probs=4.9
Q ss_pred cCccCCC
Q 037626 90 TCPVCRS 96 (99)
Q Consensus 90 ~CP~CR~ 96 (99)
.||+|.+
T Consensus 8 qcpvcqq 14 (29)
T 3vhs_A 8 QCPVCQQ 14 (29)
T ss_dssp ECTTTCC
T ss_pred eChHHHH
Confidence 5788765
No 202
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=53.97 E-value=1.8 Score=30.06 Aligned_cols=46 Identities=17% Similarity=0.596 Sum_probs=29.8
Q ss_pred cccccccccccCCeeeEecCCCCcccHHHHHHHHh----cCCCcCccCCC
Q 037626 51 ICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLD----CNQFTCPVCRS 96 (99)
Q Consensus 51 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~----~~~~~CP~CR~ 96 (99)
...||..+..++...+..-.|.--||.+|+.---. .....||.|+.
T Consensus 6 ~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~ 55 (447)
T 3kv4_A 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEV 55 (447)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHH
T ss_pred eEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCcc
Confidence 34589887754444445557888899999842211 13457999964
No 203
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=53.24 E-value=8.7 Score=23.10 Aligned_cols=27 Identities=19% Similarity=0.379 Sum_probs=14.8
Q ss_pred ccccccccccccCCeeeEecCCCCcccHHH
Q 037626 50 EICSICLMEFEKEDVVSRLTRCCHLFHADC 79 (99)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~C 79 (99)
..|+.|.+.+.+.+.+. .=+..||.+|
T Consensus 116 ~~C~~C~~~I~~~~~v~---a~~~~~H~~C 142 (192)
T 1b8t_A 116 DGCPRCGQAVYAAEKVI---GAGKSWHKSC 142 (192)
T ss_dssp EECTTTSCEECSSSCEE---ETTEEECTTT
T ss_pred CcCCCCCCEecCcEEEe---cCCCccchhc
Confidence 35888888776544432 1244455544
No 204
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=52.36 E-value=6 Score=19.26 Aligned_cols=27 Identities=19% Similarity=0.416 Sum_probs=16.2
Q ss_pred cccccccccccCCeeeEecCCCCccc--HHH
Q 037626 51 ICSICLMEFEKEDVVSRLTRCCHLFH--ADC 79 (99)
Q Consensus 51 ~C~IC~~~~~~~~~~~~l~~C~H~fh--~~C 79 (99)
.|+-|.+.+..++.... .-|..|| .+|
T Consensus 4 ~C~~C~~~I~~~~~~v~--a~~~~wH~~~~C 32 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVT--YNNFSWHASTEC 32 (65)
T ss_dssp ECTTTSSEECTTSCEEE--ETTEEEETTTTT
T ss_pred CCcCCCCeeccCceEEE--ECCCccCCCCCC
Confidence 57788887775422212 2466777 776
No 205
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=51.78 E-value=12 Score=21.98 Aligned_cols=41 Identities=17% Similarity=0.326 Sum_probs=26.9
Q ss_pred cccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 51 ICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 51 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
.|..|...+..... . .=|..||..|..+-+. ..|..|..+|
T Consensus 35 ~C~~C~~~L~~~~f---~-~~g~~yC~~~y~~~f~---~~C~~C~~~I 75 (169)
T 2rgt_A 35 KCSDCHVPLAERCF---S-RGESVYCKDDFFKRFG---TKCAACQLGI 75 (169)
T ss_dssp BCTTTCCBCCSCCE---E-SSSCEECHHHHHHHHS---CBCTTTCCBC
T ss_pred ccCCCCCcCCCCCc---c-cCCeeeeccccccccc---cccccccccc
Confidence 57777777765421 1 2466788888776543 3788888765
No 206
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=49.67 E-value=3.8 Score=22.50 Aligned_cols=7 Identities=29% Similarity=0.914 Sum_probs=3.3
Q ss_pred ccccccc
Q 037626 50 EICSICL 56 (99)
Q Consensus 50 ~~C~IC~ 56 (99)
..||+|.
T Consensus 48 ~~CPvCg 54 (112)
T 1l8d_A 48 GKCPVCG 54 (112)
T ss_dssp EECTTTC
T ss_pred CCCCCCC
Confidence 3455553
No 207
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=48.07 E-value=11 Score=19.27 Aligned_cols=10 Identities=30% Similarity=0.720 Sum_probs=5.4
Q ss_pred cccccccccc
Q 037626 49 EEICSICLME 58 (99)
Q Consensus 49 ~~~C~IC~~~ 58 (99)
...|+-|-.+
T Consensus 28 ~Y~C~~CG~~ 37 (70)
T 1twf_L 28 KYICAECSSK 37 (70)
T ss_dssp CEECSSSCCE
T ss_pred EEECCCCCCc
Confidence 3456655555
No 208
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=47.93 E-value=9 Score=19.14 Aligned_cols=46 Identities=24% Similarity=0.558 Sum_probs=27.1
Q ss_pred cccccccccccccCCeeeEec--CCCCcccHHHHHHHH---hc----CCCcCccCCC
Q 037626 49 EEICSICLMEFEKEDVVSRLT--RCCHLFHADCIERWL---DC----NQFTCPVCRS 96 (99)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~l~--~C~H~fh~~Ci~~w~---~~----~~~~CP~CR~ 96 (99)
...| ||......+..+ ..- .|..-||..|+.--- .. .+..||.||.
T Consensus 10 ~v~C-~C~~~~~~g~mI-~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 10 KVRC-ICSSTMVNDSMI-QCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp EECC-TTCCCSCCSCEE-ECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CEEe-ECCCCcCCCCEE-EECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 3457 797765555433 332 377789999974211 00 1356999974
No 209
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=46.80 E-value=17 Score=20.02 Aligned_cols=42 Identities=17% Similarity=0.221 Sum_probs=23.7
Q ss_pred cccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCCCCC
Q 037626 51 ICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCRSFF 98 (99)
Q Consensus 51 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~~~ 98 (99)
.|..|...+...... . .=|..+|..|..+-.. ..|+.|.++|
T Consensus 32 ~C~~C~~~L~~~~f~--~-~~g~~yC~~cy~~~~~---~~C~~C~~~I 73 (126)
T 2xqn_T 32 CCFDCDSILAGEIYV--M-VNDKPVCKPCYVKNHA---VVCQGCHNAI 73 (126)
T ss_dssp BCTTTCCBCTTSEEE--E-ETTEEEEHHHHHHHSC---CBCTTTCSBC
T ss_pred CcCCCCCCCCcCEEE--e-ECCEEechHHhCcCcC---ccCcccCCcC
Confidence 466777666543111 1 2355677777765322 3687777765
No 210
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=44.77 E-value=13 Score=22.06 Aligned_cols=14 Identities=14% Similarity=0.320 Sum_probs=9.3
Q ss_pred cccccccccccccC
Q 037626 49 EEICSICLMEFEKE 62 (99)
Q Consensus 49 ~~~C~IC~~~~~~~ 62 (99)
...|.-|-+.+...
T Consensus 60 ~~~C~~C~~~I~~~ 73 (182)
T 2jtn_A 60 IPMCAGCDQHILDR 73 (182)
T ss_dssp CCBCBTSSSBCCCS
T ss_pred CCcCccCCCCccCc
Confidence 34688887777644
No 211
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=42.93 E-value=29 Score=19.17 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=17.3
Q ss_pred cccccccccccccCCeeeEecCCCCcccH
Q 037626 49 EEICSICLMEFEKEDVVSRLTRCCHLFHA 77 (99)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~ 77 (99)
+..|..|... +.+-..+.|||++|.
T Consensus 24 ~~~C~~C~~~----~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTI----QENWVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCC----SSEEEETTTCCEEEC
T ss_pred CCcCccccCC----CCeeeeeecCccccC
Confidence 4569999876 223356679999873
No 212
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=42.64 E-value=14 Score=18.81 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=13.9
Q ss_pred ccccccccccccC--CeeeEecCCCCcc
Q 037626 50 EICSICLMEFEKE--DVVSRLTRCCHLF 75 (99)
Q Consensus 50 ~~C~IC~~~~~~~--~~~~~l~~C~H~f 75 (99)
..||+|..++.-. +..-+.+.||..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 9 LACPICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp CCCTTTCCCCEECTTSSEEEETTTTEEE
T ss_pred eeCCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 4688888776532 1222344565554
No 213
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=41.13 E-value=25 Score=17.23 Aligned_cols=33 Identities=18% Similarity=0.409 Sum_probs=24.8
Q ss_pred cccccccccccccCCeeeEecCCCCcccHHHHH
Q 037626 49 EEICSICLMEFEKEDVVSRLTRCCHLFHADCIE 81 (99)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~ 81 (99)
...|..|-+.+.-+....+..+|+-.-|.+|-+
T Consensus 19 ~~~C~~Cg~~i~~gkq~~kC~dC~~~cH~~C~~ 51 (61)
T 4b6d_A 19 PESCVPCGKRIKFGKLSLKCRDCRVVSHPECRD 51 (61)
T ss_dssp CEECTTTCCEECTTCEEEEESSSSCEECGGGGG
T ss_pred CcccccccCEEEEeeEeeECCCCCCeEchhHhh
Confidence 457999988776555555667899889999954
No 214
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=36.47 E-value=33 Score=18.05 Aligned_cols=33 Identities=18% Similarity=0.449 Sum_probs=20.4
Q ss_pred cccccccccccccCCeeeEe--cCCCCcccHHHHHHH
Q 037626 49 EEICSICLMEFEKEDVVSRL--TRCCHLFHADCIERW 83 (99)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~l--~~C~H~fh~~Ci~~w 83 (99)
...|.||.+.- .+ ..+.. ..|.-.||..|..+-
T Consensus 17 ~l~C~iC~~~~-~G-AciqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 17 KLTCYLCKQKG-VG-ASIQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCCBTTTTBCC-SS-CEEECSCTTTCCEEEHHHHHHH
T ss_pred cCCCcCCCCCC-Cc-EeEecCCCCCCCcCcHHHHHHC
Confidence 45799996541 11 11111 257889999998874
No 215
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=35.90 E-value=19 Score=19.70 Aligned_cols=46 Identities=17% Similarity=0.305 Sum_probs=27.6
Q ss_pred cccccccccccCCeeeEecCCCCcccHHHHHHHHhc-------CCCcCccCCC
Q 037626 51 ICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDC-------NQFTCPVCRS 96 (99)
Q Consensus 51 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~-------~~~~CP~CR~ 96 (99)
.|..|....+.++.+.....|...+|..|.....+. +...||.|+.
T Consensus 61 ~c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 61 EVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp CBCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred cccccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 355555554444445455679999999997643211 1235999975
No 216
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=35.54 E-value=32 Score=14.98 Aligned_cols=6 Identities=17% Similarity=0.689 Sum_probs=2.3
Q ss_pred HHHHhh
Q 037626 19 FSCILI 24 (99)
Q Consensus 19 ~~~~~~ 24 (99)
++++.+
T Consensus 16 fYFl~i 21 (37)
T 2rdd_B 16 FYFMIL 21 (37)
T ss_dssp HHHHTH
T ss_pred HHHHHh
Confidence 333333
No 217
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=34.36 E-value=15 Score=18.60 Aligned_cols=26 Identities=8% Similarity=-0.079 Sum_probs=13.9
Q ss_pred ccccccccccccC--CeeeEecCCCCcc
Q 037626 50 EICSICLMEFEKE--DVVSRLTRCCHLF 75 (99)
Q Consensus 50 ~~C~IC~~~~~~~--~~~~~l~~C~H~f 75 (99)
..||+|..++... +..-+.+.||+.|
T Consensus 11 L~CP~ck~~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 11 LACPKDKGPLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred hCCCCCCCcCeEeCCCCEEEcCCCCccc
Confidence 4688888876432 1122344555544
No 218
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=34.30 E-value=14 Score=17.18 Aligned_cols=7 Identities=57% Similarity=1.497 Sum_probs=5.6
Q ss_pred cCccCCC
Q 037626 90 TCPVCRS 96 (99)
Q Consensus 90 ~CP~CR~ 96 (99)
.||.|..
T Consensus 32 ~CP~Cg~ 38 (46)
T 6rxn_A 32 CCPVCGV 38 (46)
T ss_dssp BCTTTCC
T ss_pred cCcCCCC
Confidence 7999975
No 219
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=34.02 E-value=1.4 Score=17.50 Aligned_cols=10 Identities=40% Similarity=1.129 Sum_probs=6.8
Q ss_pred ccHHHHHHHH
Q 037626 75 FHADCIERWL 84 (99)
Q Consensus 75 fh~~Ci~~w~ 84 (99)
||+.|-..|+
T Consensus 7 fcetcskpwl 16 (26)
T 1loi_A 7 FCETCSKPWL 16 (26)
T ss_dssp HHHTSSCTTG
T ss_pred HHHhcCCchh
Confidence 6777766665
No 220
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=33.84 E-value=39 Score=15.47 Aligned_cols=28 Identities=18% Similarity=0.442 Sum_probs=16.4
Q ss_pred cccccccc-cc--ccCCeeeEecCCCCcccH
Q 037626 50 EICSICLM-EF--EKEDVVSRLTRCCHLFHA 77 (99)
Q Consensus 50 ~~C~IC~~-~~--~~~~~~~~l~~C~H~fh~ 77 (99)
..|+.|-. ++ +......+...||..+-.
T Consensus 6 ~~CP~C~~~~l~~d~~~gelvC~~CG~v~~e 36 (50)
T 1pft_A 6 KVCPACESAELIYDPERGEIVCAKCGYVIEE 36 (50)
T ss_dssp CSCTTTSCCCEEEETTTTEEEESSSCCBCCC
T ss_pred EeCcCCCCcceEEcCCCCeEECcccCCcccc
Confidence 45999966 43 222233356678887643
No 221
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=33.57 E-value=36 Score=22.77 Aligned_cols=35 Identities=26% Similarity=0.418 Sum_probs=24.5
Q ss_pred ccccccccccccc-cCCeeeEecCCCCcccHHHHHH
Q 037626 48 VEEICSICLMEFE-KEDVVSRLTRCCHLFHADCIER 82 (99)
Q Consensus 48 ~~~~C~IC~~~~~-~~~~~~~l~~C~H~fh~~Ci~~ 82 (99)
....|..|.+.+. ....--....||..+|..|...
T Consensus 356 ~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 356 ETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred CCCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 3457999999874 2222234557999999999663
No 222
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=33.04 E-value=32 Score=21.10 Aligned_cols=8 Identities=38% Similarity=1.107 Sum_probs=5.8
Q ss_pred cCccCCCC
Q 037626 90 TCPVCRSF 97 (99)
Q Consensus 90 ~CP~CR~~ 97 (99)
.||+|..+
T Consensus 188 ~CP~C~~~ 195 (202)
T 1yuz_A 188 KCPICFRP 195 (202)
T ss_dssp BCTTTCCB
T ss_pred CCCCCCCC
Confidence 78888653
No 223
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=31.93 E-value=30 Score=25.78 Aligned_cols=48 Identities=21% Similarity=0.412 Sum_probs=32.0
Q ss_pred ccccccccccccccCCee------eEecCCCCc--------------------ccHHHHHHHHhc-------CCCcCccC
Q 037626 48 VEEICSICLMEFEKEDVV------SRLTRCCHL--------------------FHADCIERWLDC-------NQFTCPVC 94 (99)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~------~~l~~C~H~--------------------fh~~Ci~~w~~~-------~~~~CP~C 94 (99)
+-..|+=|+.++.++..- .-.+.||-. .|.+|-.++-.- +...||.|
T Consensus 110 D~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~C 189 (761)
T 3vth_A 110 DMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFDC 189 (761)
T ss_dssp CBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTTT
T ss_pred CccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCcc
Confidence 345799999998776432 234567633 489999998542 22369999
Q ss_pred C
Q 037626 95 R 95 (99)
Q Consensus 95 R 95 (99)
-
T Consensus 190 G 190 (761)
T 3vth_A 190 G 190 (761)
T ss_dssp S
T ss_pred C
Confidence 4
No 224
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=31.79 E-value=17 Score=18.39 Aligned_cols=12 Identities=17% Similarity=0.349 Sum_probs=8.6
Q ss_pred cccccccccccc
Q 037626 49 EEICSICLMEFE 60 (99)
Q Consensus 49 ~~~C~IC~~~~~ 60 (99)
-..||+|..++.
T Consensus 8 iL~CP~ck~~L~ 19 (68)
T 2jr6_A 8 ILVCPVTKGRLE 19 (68)
T ss_dssp CCBCSSSCCBCE
T ss_pred heECCCCCCcCe
Confidence 346888888764
No 225
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=31.25 E-value=18 Score=18.32 Aligned_cols=11 Identities=18% Similarity=0.621 Sum_probs=8.0
Q ss_pred ccccccccccc
Q 037626 50 EICSICLMEFE 60 (99)
Q Consensus 50 ~~C~IC~~~~~ 60 (99)
..||+|..++.
T Consensus 9 L~CP~ck~~L~ 19 (68)
T 2hf1_A 9 LVCPLCKGPLV 19 (68)
T ss_dssp CBCTTTCCBCE
T ss_pred eECCCCCCcCe
Confidence 46888887764
No 226
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=30.89 E-value=11 Score=20.93 Aligned_cols=27 Identities=26% Similarity=0.664 Sum_probs=17.6
Q ss_pred CCCCcccHHHHH------HHHhc----CCCcCccCCC
Q 037626 70 RCCHLFHADCIE------RWLDC----NQFTCPVCRS 96 (99)
Q Consensus 70 ~C~H~fh~~Ci~------~w~~~----~~~~CP~CR~ 96 (99)
.|+..||..|.. +-+.. ....||.|..
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~ 43 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTE 43 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTT
T ss_pred cCCCccCCcccccCHHHHHHHhhccccceeeCccccc
Confidence 589999999951 12221 2357999964
No 227
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=30.41 E-value=27 Score=12.61 Aligned_cols=8 Identities=38% Similarity=0.966 Sum_probs=4.7
Q ss_pred cCccCCCC
Q 037626 90 TCPVCRSF 97 (99)
Q Consensus 90 ~CP~CR~~ 97 (99)
.|+.|...
T Consensus 4 ~C~~C~~~ 11 (29)
T 1ard_A 4 VCEVCTRA 11 (29)
T ss_dssp BCTTTCCB
T ss_pred ECCCCCcc
Confidence 56666543
No 228
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=29.14 E-value=28 Score=12.44 Aligned_cols=8 Identities=38% Similarity=1.049 Sum_probs=4.8
Q ss_pred cCccCCCC
Q 037626 90 TCPVCRSF 97 (99)
Q Consensus 90 ~CP~CR~~ 97 (99)
.|+.|...
T Consensus 4 ~C~~C~~~ 11 (29)
T 2m0e_A 4 KCPHCDKK 11 (29)
T ss_dssp CCSSCCCC
T ss_pred cCCCCCcc
Confidence 56776544
No 229
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=28.82 E-value=62 Score=17.61 Aligned_cols=24 Identities=0% Similarity=0.063 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhh
Q 037626 4 LMYSQSRLFTAAIFFFSCILIPLL 27 (99)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~~~~~ 27 (99)
.+|+.+++++...++++.++.-+.
T Consensus 71 ~iyFi~fi~i~~fi~lNLfiaVi~ 94 (112)
T 4f4l_A 71 WVFFIPFIMLTTFTVLNLFIGIIV 94 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667776666666555554443
No 230
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=27.99 E-value=21 Score=17.22 Aligned_cols=7 Identities=43% Similarity=1.445 Sum_probs=5.6
Q ss_pred cCccCCC
Q 037626 90 TCPVCRS 96 (99)
Q Consensus 90 ~CP~CR~ 96 (99)
+||.|..
T Consensus 38 ~CP~Cg~ 44 (54)
T 4rxn_A 38 VCPLCGV 44 (54)
T ss_dssp BCTTTCC
T ss_pred cCcCCCC
Confidence 7999865
No 231
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=27.95 E-value=23 Score=16.86 Aligned_cols=7 Identities=57% Similarity=1.649 Sum_probs=5.3
Q ss_pred cCccCCC
Q 037626 90 TCPVCRS 96 (99)
Q Consensus 90 ~CP~CR~ 96 (99)
.||.|..
T Consensus 38 ~CP~Cg~ 44 (52)
T 1e8j_A 38 ACPVCGA 44 (52)
T ss_dssp CCSSSCC
T ss_pred cCCCCCC
Confidence 6888865
No 232
>3bbo_3 Ribosomal protein L33; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=27.94 E-value=24 Score=17.78 Aligned_cols=9 Identities=33% Similarity=0.862 Sum_probs=6.9
Q ss_pred cCccCCCCC
Q 037626 90 TCPVCRSFF 98 (99)
Q Consensus 90 ~CP~CR~~~ 98 (99)
-||.||+..
T Consensus 51 ycp~c~kHt 59 (66)
T 3bbo_3 51 FCPYCYKHT 59 (66)
T ss_dssp CCCSSSSCC
T ss_pred cCCCCCCee
Confidence 599998754
No 233
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=27.57 E-value=12 Score=20.71 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=13.1
Q ss_pred ccccccccccccccCCeeeE
Q 037626 48 VEEICSICLMEFEKEDVVSR 67 (99)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~ 67 (99)
-+..|+||-....+...+++
T Consensus 28 cdGkC~iCDs~Vrp~~~VrI 47 (109)
T 2k0a_A 28 CDGKCPICDSYVRPKRKVRV 47 (109)
T ss_dssp GTTCCTTTCCCCCCCEECEE
T ss_pred cCCcccccCCccCCcceEEE
Confidence 35679999887666544443
No 234
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=27.27 E-value=58 Score=17.08 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=24.0
Q ss_pred cccccccccccccCCee--eEecCCCCcccHHHHHHH
Q 037626 49 EEICSICLMEFEKEDVV--SRLTRCCHLFHADCIERW 83 (99)
Q Consensus 49 ~~~C~IC~~~~~~~~~~--~~l~~C~H~fh~~Ci~~w 83 (99)
...|.+|.+.......+ .+..=|+-..|.+|.+..
T Consensus 38 ~s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~~~ 74 (84)
T 1r79_A 38 SAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESL 74 (84)
T ss_dssp TCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHHC
T ss_pred CCEeCCCCCEeCCccCCCCCCCcccChhHHHHHHHhc
Confidence 45799999886543211 123348889999999875
No 235
>1wvk_A AT2G23090/F21P24.15; structural genomics, protein structure initiative, cell free, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: g.82.1.1
Probab=27.18 E-value=32 Score=18.31 Aligned_cols=18 Identities=22% Similarity=0.610 Sum_probs=12.2
Q ss_pred CCCCcccccccccccccc
Q 037626 43 AEDSKVEEICSICLMEFE 60 (99)
Q Consensus 43 ~~~~~~~~~C~IC~~~~~ 60 (99)
.........|.||+..|-
T Consensus 39 an~~A~~i~C~VCr~tFm 56 (86)
T 1wvk_A 39 ANKKAMSIQCKVCMQTFI 56 (86)
T ss_dssp CCCTTCCEEETTTTEEEC
T ss_pred HHHHhhCCCChHhHhhHH
Confidence 334445568999999663
No 236
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=27.01 E-value=23 Score=17.06 Aligned_cols=7 Identities=43% Similarity=1.222 Sum_probs=5.5
Q ss_pred cCccCCC
Q 037626 90 TCPVCRS 96 (99)
Q Consensus 90 ~CP~CR~ 96 (99)
.||.|..
T Consensus 38 ~CP~Cga 44 (55)
T 2v3b_B 38 VCPDCGV 44 (55)
T ss_dssp CCTTTCC
T ss_pred cCCCCCC
Confidence 6888865
No 237
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=26.62 E-value=30 Score=12.26 Aligned_cols=8 Identities=25% Similarity=0.862 Sum_probs=4.4
Q ss_pred cCccCCCC
Q 037626 90 TCPVCRSF 97 (99)
Q Consensus 90 ~CP~CR~~ 97 (99)
.|+.|.+.
T Consensus 3 ~C~~C~k~ 10 (27)
T 1znf_A 3 KCGLCERS 10 (27)
T ss_dssp BCSSSCCB
T ss_pred cCCCCCCc
Confidence 46666543
No 238
>2zjr_1 50S ribosomal protein L33; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.6 PDB: 1nwx_1* 1xbp_1* 2zjp_1* 2zjq_1 1nwy_1 3cf5_1* 3dll_1* 3pio_1* 3pip_1* 1pnu_1 1pny_1 1vor_3 1vou_3 1vow_3 1voy_3 1vp0_3
Probab=26.60 E-value=17 Score=17.60 Aligned_cols=9 Identities=22% Similarity=0.342 Sum_probs=6.6
Q ss_pred cCccCCCCC
Q 037626 90 TCPVCRSFF 98 (99)
Q Consensus 90 ~CP~CR~~~ 98 (99)
-||.||+..
T Consensus 40 ycp~~~kHt 48 (55)
T 2zjr_1 40 YDPVAKKHV 48 (55)
T ss_pred cCCCCCCEE
Confidence 588888754
No 239
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=26.39 E-value=21 Score=20.69 Aligned_cols=26 Identities=27% Similarity=0.570 Sum_probs=18.3
Q ss_pred ccccccccccccCC-eeeEecCCCCcc
Q 037626 50 EICSICLMEFEKED-VVSRLTRCCHLF 75 (99)
Q Consensus 50 ~~C~IC~~~~~~~~-~~~~l~~C~H~f 75 (99)
..||-|..++.-.+ ..-+.|.|+|-+
T Consensus 28 P~CP~C~seytYeDg~l~vCPeC~hEW 54 (138)
T 2akl_A 28 PPCPQCNSEYTYEDGALLVCPECAHEW 54 (138)
T ss_dssp CCCTTTCCCCCEECSSSEEETTTTEEE
T ss_pred CCCCCCCCcceEecCCeEECCcccccc
Confidence 56999999875332 334677888876
No 240
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=26.31 E-value=23 Score=16.82 Aligned_cols=7 Identities=43% Similarity=1.545 Sum_probs=5.4
Q ss_pred cCccCCC
Q 037626 90 TCPVCRS 96 (99)
Q Consensus 90 ~CP~CR~ 96 (99)
.||.|..
T Consensus 37 ~CP~Cg~ 43 (52)
T 1yk4_A 37 VCPLCGA 43 (52)
T ss_dssp BCTTTCC
T ss_pred cCCCCCC
Confidence 6888865
No 241
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=25.86 E-value=24 Score=17.88 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=14.1
Q ss_pred cccccccccccccCC--eeeEecCCCCcc
Q 037626 49 EEICSICLMEFEKED--VVSRLTRCCHLF 75 (99)
Q Consensus 49 ~~~C~IC~~~~~~~~--~~~~l~~C~H~f 75 (99)
-..||+|..++.... ..-+.+.||..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 8 ILVCPVCKGRLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CCBCTTTCCBEEEETTTTEEEETTTTEEE
T ss_pred heECCCCCCcCEEeCCCCEEEcCCCCcee
Confidence 346888888764321 112334455544
No 242
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=25.86 E-value=31 Score=13.58 Aligned_cols=9 Identities=44% Similarity=1.161 Sum_probs=5.1
Q ss_pred CcCccCCCC
Q 037626 89 FTCPVCRSF 97 (99)
Q Consensus 89 ~~CP~CR~~ 97 (99)
..|+.|...
T Consensus 12 ~~C~~C~k~ 20 (37)
T 1p7a_A 12 FQCPDCDRS 20 (37)
T ss_dssp BCCTTTCCC
T ss_pred ccCCCCCcc
Confidence 356666544
No 243
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=25.66 E-value=40 Score=17.73 Aligned_cols=39 Identities=10% Similarity=0.245 Sum_probs=22.1
Q ss_pred CCCCCCCCCcccccccccccc---cccCCeeeEecCCCCccc
Q 037626 38 GYQPEAEDSKVEEICSICLME---FEKEDVVSRLTRCCHLFH 76 (99)
Q Consensus 38 ~~~~~~~~~~~~~~C~IC~~~---~~~~~~~~~l~~C~H~fh 76 (99)
...+.....-.+..|+-|.+. |.....++....||...+
T Consensus 21 ~Lv~~PnS~Fm~VkCp~C~n~q~VFShA~t~V~C~~Cg~~L~ 62 (81)
T 2xzm_6 21 RLIQAPNSYFMDVKCAQCQNIQMIFSNAQSTIICEKCSAILC 62 (81)
T ss_dssp SSSCCCSCCEEEEECSSSCCEEEEETTCSSCEECSSSCCEEE
T ss_pred eeeeCCCCcEEEeECCCCCCeeEEEecCccEEEccCCCCEEe
Confidence 334444555566678888775 344444445556666543
No 244
>2ftc_P Mitochondrial ribosomal protein L33 isoform A, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_P
Probab=25.30 E-value=19 Score=17.15 Aligned_cols=9 Identities=22% Similarity=0.213 Sum_probs=6.6
Q ss_pred cCccCCCCC
Q 037626 90 TCPVCRSFF 98 (99)
Q Consensus 90 ~CP~CR~~~ 98 (99)
-||.||+..
T Consensus 38 ycp~~~kht 46 (52)
T 2ftc_P 38 YDPVVKQRV 46 (52)
T ss_pred cCCCCCceE
Confidence 588888754
No 245
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=23.86 E-value=38 Score=12.15 Aligned_cols=8 Identities=25% Similarity=0.671 Sum_probs=4.6
Q ss_pred cCccCCCC
Q 037626 90 TCPVCRSF 97 (99)
Q Consensus 90 ~CP~CR~~ 97 (99)
.|+.|...
T Consensus 4 ~C~~C~k~ 11 (30)
T 1klr_A 4 QCQYCEFR 11 (30)
T ss_dssp CCSSSSCC
T ss_pred cCCCCCCc
Confidence 56666543
No 246
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=23.26 E-value=1e+02 Score=17.50 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=17.2
Q ss_pred cccccccccccccCCeeeEecCCCCccc
Q 037626 49 EEICSICLMEFEKEDVVSRLTRCCHLFH 76 (99)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh 76 (99)
...|..|... +.+...+.|||+-|
T Consensus 34 ~~~C~~C~~~----~~LwlCL~CG~vgC 57 (129)
T 2g45_A 34 GWKCSKCDMR----ENLWLNLTDGSILC 57 (129)
T ss_dssp BCCCSSSSCC----SSEEEETTTCCEEE
T ss_pred CCcCccccCc----CceEEeccCCcccc
Confidence 3469999765 35667778999855
No 247
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=23.23 E-value=48 Score=21.52 Aligned_cols=25 Identities=16% Similarity=0.444 Sum_probs=11.1
Q ss_pred ecCCCCcccHHHHHHHHhcCCCcCccCCC
Q 037626 68 LTRCCHLFHADCIERWLDCNQFTCPVCRS 96 (99)
Q Consensus 68 l~~C~H~fh~~Ci~~w~~~~~~~CP~CR~ 96 (99)
.+.|+......-+.+|+. .||.|+.
T Consensus 33 c~~~~~~~y~~~l~~~~~----v~p~~~~ 57 (285)
T 2f9i_B 33 CPKCKKIMYTKELAENLN----VCFNCDH 57 (285)
T ss_dssp CTTTCCEEEHHHHHHTTT----BCTTTCC
T ss_pred hHhhCCccchhhhHHhcC----cCCCCCC
Confidence 334444444443444332 5555544
No 248
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=23.12 E-value=20 Score=16.07 Aligned_cols=8 Identities=38% Similarity=1.003 Sum_probs=5.0
Q ss_pred cCccCCCC
Q 037626 90 TCPVCRSF 97 (99)
Q Consensus 90 ~CP~CR~~ 97 (99)
.||.|+..
T Consensus 11 ~C~~C~~~ 18 (39)
T 2i5o_A 11 PCEKCGSL 18 (39)
T ss_dssp ECTTTCCE
T ss_pred ccccccCc
Confidence 57777654
No 249
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=22.93 E-value=1e+02 Score=17.71 Aligned_cols=13 Identities=15% Similarity=0.393 Sum_probs=5.2
Q ss_pred HHHhhhhhhhHHH
Q 037626 20 SCILIPLLETKRA 32 (99)
Q Consensus 20 ~~~~~~~~~~~~~ 32 (99)
..+.+...+.|+.
T Consensus 68 ~GImLsYiRSKk~ 80 (138)
T 2k21_A 68 LGIMLSYIRSKKL 80 (138)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhhc
Confidence 3333344444443
No 250
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=28.43 E-value=18 Score=12.96 Aligned_cols=7 Identities=29% Similarity=0.933 Sum_probs=3.7
Q ss_pred cCccCCC
Q 037626 90 TCPVCRS 96 (99)
Q Consensus 90 ~CP~CR~ 96 (99)
.|+.|..
T Consensus 4 ~C~~C~k 10 (26)
T 2lvu_A 4 VCERCGK 10 (26)
Confidence 4555543
No 251
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=22.31 E-value=42 Score=12.14 Aligned_cols=8 Identities=25% Similarity=0.899 Sum_probs=4.4
Q ss_pred cCccCCCC
Q 037626 90 TCPVCRSF 97 (99)
Q Consensus 90 ~CP~CR~~ 97 (99)
.|+.|...
T Consensus 4 ~C~~C~k~ 11 (30)
T 1paa_A 4 ACGLCNRA 11 (30)
T ss_dssp BCTTTCCB
T ss_pred CCcccCcc
Confidence 46666543
No 252
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.26 E-value=42 Score=12.98 Aligned_cols=8 Identities=25% Similarity=0.767 Sum_probs=4.2
Q ss_pred cCccCCCC
Q 037626 90 TCPVCRSF 97 (99)
Q Consensus 90 ~CP~CR~~ 97 (99)
.|+.|.+.
T Consensus 11 ~C~~C~k~ 18 (36)
T 2elr_A 11 LCDMCGKK 18 (36)
T ss_dssp BCTTTCCB
T ss_pred ecCcCCCC
Confidence 46666443
No 253
>2eqe_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=22.19 E-value=18 Score=16.81 Aligned_cols=16 Identities=19% Similarity=0.823 Sum_probs=9.6
Q ss_pred cccccccccccccccC
Q 037626 47 KVEEICSICLMEFEKE 62 (99)
Q Consensus 47 ~~~~~C~IC~~~~~~~ 62 (99)
+.+..|.+|+-++..+
T Consensus 30 en~GFCTlCf~eyre~ 45 (48)
T 2eqe_A 30 ENKGFCTLCFIEYSGP 45 (48)
T ss_dssp TTTTCCHHHHHHHHSC
T ss_pred ccCceeeeehhhhhcc
Confidence 4445677777666554
No 254
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=22.10 E-value=30 Score=17.53 Aligned_cols=7 Identities=71% Similarity=1.758 Sum_probs=5.6
Q ss_pred cCccCCC
Q 037626 90 TCPVCRS 96 (99)
Q Consensus 90 ~CP~CR~ 96 (99)
.||.|..
T Consensus 42 ~CP~Cga 48 (70)
T 1dx8_A 42 MCPACRS 48 (70)
T ss_dssp BCTTTCC
T ss_pred cCCCCCC
Confidence 7999965
No 255
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=21.41 E-value=41 Score=17.77 Aligned_cols=6 Identities=67% Similarity=1.857 Sum_probs=2.9
Q ss_pred cCccCC
Q 037626 90 TCPVCR 95 (99)
Q Consensus 90 ~CP~CR 95 (99)
+||.|.
T Consensus 25 ~CPfCn 30 (85)
T 1wii_A 25 TCPFCN 30 (85)
T ss_dssp CCTTTC
T ss_pred cCCCCC
Confidence 455553
No 256
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.20 E-value=91 Score=15.53 Aligned_cols=45 Identities=22% Similarity=0.448 Sum_probs=24.0
Q ss_pred cccccccccccccCCeeeEecCCC---CcccHHHHHHHHh-cCCCcCccCCC
Q 037626 49 EEICSICLMEFEKEDVVSRLTRCC---HLFHADCIERWLD-CNQFTCPVCRS 96 (99)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~l~~C~---H~fh~~Ci~~w~~-~~~~~CP~CR~ 96 (99)
...| ||.... .++.+ ..-.|. .-||..|+.--.. .....||.|+.
T Consensus 6 ~~yC-~C~~~~-~g~MI-~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 54 (70)
T 1x4i_A 6 SGYC-ICNQVS-YGEMV-GCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTA 54 (70)
T ss_dssp CCCS-TTSCCC-CSSEE-CCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CeEE-EcCCCC-CCCEe-EeCCCCCCccCCcccccccCcCCCCCEECCCCCc
Confidence 3446 587763 33322 233442 5799999873111 12345888853
No 257
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=20.63 E-value=2e+02 Score=19.16 Aligned_cols=39 Identities=13% Similarity=0.267 Sum_probs=26.9
Q ss_pred ccccccccccccCCeeeEecCCCCcccHHHHHHHHhcCCCcCccCC
Q 037626 50 EICSICLMEFEKEDVVSRLTRCCHLFHADCIERWLDCNQFTCPVCR 95 (99)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w~~~~~~~CP~CR 95 (99)
..|+.=+.++..+......+-||-.||.+- +...||+|.
T Consensus 263 ~iCa~s~tPIY~g~~~v~Cp~cgA~y~~~~-------kG~lC~vC~ 301 (320)
T 3mkr_B 263 DICAASYRPIYRGKPVEKCPLSGACYSPEF-------KGQICKVTT 301 (320)
T ss_dssp CBBTTTCCBCCTTSCCEECTTTCCEECGGG-------TTSBCTTTS
T ss_pred ceecCCCccccCCCCCccCCCCCCeechhh-------CCCCCCCCc
Confidence 356666666655666667888998888654 223799995
No 258
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=20.32 E-value=67 Score=13.69 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=11.5
Q ss_pred CchhhhHHHHHHHHHHHHHHHHh
Q 037626 1 MISLMYSQSRLFTAAIFFFSCIL 23 (99)
Q Consensus 1 ~~~~~~~~~~l~~~~~~~~~~~~ 23 (99)
|=++.|.+..+....++++.+..
T Consensus 1 MEa~vYt~ll~~tlgiiFFAI~F 23 (32)
T 3arc_T 1 METITYVFIFACIIALFFFAIFF 23 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHHhhhh
Confidence 33455555555554555554443
Done!