Query 037627
Match_columns 858
No_of_seqs 684 out of 4075
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 02:52:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037627.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037627hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 8E-82 1.7E-86 727.6 45.4 803 2-842 1-866 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.1E-58 4.6E-63 565.0 47.1 622 170-845 178-891 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 5.8E-42 1.3E-46 361.0 16.9 279 181-460 1-284 (287)
4 KOG0444 Cytoskeletal regulator 99.9 3.3E-25 7.2E-30 231.3 -4.7 308 528-857 55-372 (1255)
5 PLN00113 leucine-rich repeat r 99.9 7.8E-23 1.7E-27 252.4 14.8 218 561-789 143-370 (968)
6 PLN00113 leucine-rich repeat r 99.9 1.5E-22 3.2E-27 250.0 15.0 283 561-856 167-484 (968)
7 KOG4194 Membrane glycoprotein 99.9 2.2E-23 4.7E-28 216.7 4.1 273 561-846 152-439 (873)
8 KOG4194 Membrane glycoprotein 99.9 9.8E-23 2.1E-27 211.9 3.2 283 561-857 128-426 (873)
9 KOG0444 Cytoskeletal regulator 99.9 1.4E-23 3.1E-28 219.1 -4.7 281 561-857 10-326 (1255)
10 PLN03210 Resistant to P. syrin 99.7 1.6E-17 3.5E-22 204.9 17.4 258 561-838 614-907 (1153)
11 PRK15387 E3 ubiquitin-protein 99.7 5.7E-16 1.2E-20 176.8 13.6 228 561-835 225-456 (788)
12 KOG0472 Leucine-rich repeat pr 99.6 2.7E-18 6E-23 171.4 -7.7 232 561-811 71-308 (565)
13 PRK04841 transcriptional regul 99.6 4.6E-14 9.9E-19 173.8 26.0 298 174-510 12-332 (903)
14 KOG0472 Leucine-rich repeat pr 99.6 2.7E-18 5.8E-23 171.5 -10.5 255 561-835 48-308 (565)
15 KOG0618 Serine/threonine phosp 99.6 4.1E-17 8.9E-22 179.8 -4.2 241 590-838 241-490 (1081)
16 PRK15387 E3 ubiquitin-protein 99.5 1.1E-14 2.4E-19 166.4 10.3 247 561-857 204-455 (788)
17 COG2909 MalT ATP-dependent tra 99.5 5.1E-13 1.1E-17 147.7 22.5 303 173-512 16-340 (894)
18 KOG0618 Serine/threonine phosp 99.5 2.2E-16 4.8E-21 174.1 -4.9 254 561-833 244-506 (1081)
19 PRK15370 E3 ubiquitin-protein 99.5 1.3E-14 2.9E-19 167.0 8.3 220 561-835 202-426 (754)
20 PRK00411 cdc6 cell division co 99.5 2.4E-11 5.2E-16 134.0 27.9 314 171-499 25-374 (394)
21 PRK15370 E3 ubiquitin-protein 99.4 1.9E-13 4E-18 157.6 7.7 239 526-829 197-438 (754)
22 TIGR02928 orc1/cdc6 family rep 99.4 1.4E-10 3.1E-15 126.5 27.3 300 173-487 12-351 (365)
23 KOG4237 Extracellular matrix p 99.4 1.1E-14 2.3E-19 146.0 -5.5 260 561-835 70-357 (498)
24 KOG0617 Ras suppressor protein 99.3 3.3E-14 7.2E-19 125.9 -3.4 151 586-764 29-186 (264)
25 PF01637 Arch_ATPase: Archaeal 99.3 1.9E-11 4.2E-16 124.6 13.5 196 178-382 1-234 (234)
26 TIGR03015 pepcterm_ATPase puta 99.3 4.1E-10 8.9E-15 117.3 22.7 183 199-386 43-242 (269)
27 TIGR00635 ruvB Holliday juncti 99.3 7.9E-11 1.7E-15 124.9 15.1 277 176-487 4-290 (305)
28 PRK00080 ruvB Holliday junctio 99.2 1.5E-10 3.2E-15 123.4 16.4 279 175-487 24-311 (328)
29 cd00116 LRR_RI Leucine-rich re 99.2 3.2E-13 6.9E-18 145.0 -4.6 250 563-835 3-289 (319)
30 KOG4237 Extracellular matrix p 99.2 8.4E-13 1.8E-17 132.6 -1.5 246 526-787 65-358 (498)
31 KOG0617 Ras suppressor protein 99.2 4.1E-13 8.9E-18 119.0 -4.5 165 675-848 30-197 (264)
32 COG3899 Predicted ATPase [Gene 99.1 2.4E-09 5.2E-14 126.5 19.7 315 177-510 1-386 (849)
33 cd00116 LRR_RI Leucine-rich re 99.1 1E-11 2.2E-16 133.2 -0.7 249 561-835 26-318 (319)
34 PF05729 NACHT: NACHT domain 99.1 1.3E-09 2.8E-14 104.4 12.1 143 200-351 1-163 (166)
35 PTZ00112 origin recognition co 99.0 8.5E-08 1.8E-12 107.8 23.5 299 173-487 752-1087(1164)
36 KOG3207 Beta-tubulin folding c 99.0 1.3E-10 2.8E-15 118.8 1.1 37 587-623 118-156 (505)
37 KOG1259 Nischarin, modulator o 98.9 2.7E-10 5.8E-15 110.5 2.0 128 676-811 282-410 (490)
38 KOG4658 Apoptotic ATPase [Sign 98.9 6.5E-10 1.4E-14 130.7 2.9 252 586-841 567-847 (889)
39 PRK06893 DNA replication initi 98.9 3E-08 6.5E-13 99.5 13.6 152 199-384 39-205 (229)
40 COG2256 MGS1 ATPase related to 98.9 7.9E-08 1.7E-12 98.4 16.3 172 172-379 26-209 (436)
41 PRK07003 DNA polymerase III su 98.8 2.2E-07 4.9E-12 104.2 19.3 197 176-382 16-221 (830)
42 KOG3207 Beta-tubulin folding c 98.8 7.7E-10 1.7E-14 113.3 -0.1 218 634-856 118-366 (505)
43 PTZ00202 tuzin; Provisional 98.8 1.5E-06 3.3E-11 90.8 23.2 169 172-351 258-434 (550)
44 COG3903 Predicted ATPase [Gene 98.8 2.1E-08 4.5E-13 103.5 9.4 290 198-511 13-315 (414)
45 COG1474 CDC6 Cdc6-related prot 98.8 8.2E-07 1.8E-11 94.5 21.8 293 173-487 14-335 (366)
46 PRK13342 recombination factor 98.8 9.2E-08 2E-12 105.2 14.1 176 176-384 12-198 (413)
47 PRK14961 DNA polymerase III su 98.8 3E-07 6.6E-12 99.1 17.8 194 176-379 16-217 (363)
48 PF13173 AAA_14: AAA domain 98.7 3.9E-08 8.5E-13 88.9 9.2 121 199-343 2-127 (128)
49 PRK12402 replication factor C 98.7 1.9E-07 4.1E-12 100.9 15.6 198 176-381 15-225 (337)
50 PF14580 LRR_9: Leucine-rich r 98.7 3.4E-09 7.4E-14 99.5 1.3 128 676-809 17-149 (175)
51 PRK04195 replication factor C 98.7 9.7E-07 2.1E-11 99.1 21.2 243 176-460 14-271 (482)
52 PRK14960 DNA polymerase III su 98.7 9.4E-07 2E-11 98.3 19.7 196 176-381 15-218 (702)
53 PRK14949 DNA polymerase III su 98.7 3.2E-07 6.9E-12 105.1 16.5 197 176-382 16-220 (944)
54 PF14580 LRR_9: Leucine-rich r 98.7 6.7E-09 1.5E-13 97.5 1.9 108 586-738 15-123 (175)
55 TIGR03420 DnaA_homol_Hda DnaA 98.7 2.8E-07 6.2E-12 93.1 13.9 167 182-384 23-203 (226)
56 PF13401 AAA_22: AAA domain; P 98.7 6.4E-08 1.4E-12 88.4 8.1 114 198-319 3-125 (131)
57 KOG1909 Ran GTPase-activating 98.6 6.3E-10 1.4E-14 110.9 -6.1 133 701-835 155-309 (382)
58 PRK05564 DNA polymerase III su 98.6 9.9E-07 2.1E-11 93.5 17.5 177 176-380 4-188 (313)
59 KOG0532 Leucine-rich repeat (L 98.6 1.3E-09 2.9E-14 115.0 -4.8 174 561-771 78-253 (722)
60 PF13191 AAA_16: AAA ATPase do 98.6 5.9E-08 1.3E-12 94.7 6.7 46 177-222 1-47 (185)
61 PF14516 AAA_35: AAA-like doma 98.6 9.1E-06 2E-10 86.4 23.6 205 174-389 9-246 (331)
62 PRK00440 rfc replication facto 98.6 1.7E-06 3.7E-11 92.7 18.4 180 176-380 17-201 (319)
63 PF05496 RuvB_N: Holliday junc 98.6 2.1E-07 4.5E-12 89.2 9.8 178 175-386 23-225 (233)
64 PRK12323 DNA polymerase III su 98.6 7.2E-07 1.6E-11 98.9 15.4 202 176-382 16-225 (700)
65 KOG1259 Nischarin, modulator o 98.6 5.9E-09 1.3E-13 101.3 -1.1 124 611-738 282-409 (490)
66 PRK08084 DNA replication initi 98.6 8.5E-07 1.8E-11 89.3 14.5 152 199-384 45-211 (235)
67 COG4886 Leucine-rich repeat (L 98.6 4.2E-08 9.2E-13 108.4 5.5 178 584-788 110-290 (394)
68 PRK14957 DNA polymerase III su 98.6 1.4E-06 2.9E-11 97.1 17.1 182 176-382 16-221 (546)
69 PRK06645 DNA polymerase III su 98.6 1.8E-06 3.9E-11 95.6 17.8 197 176-379 21-226 (507)
70 PRK14963 DNA polymerase III su 98.6 1.3E-06 2.9E-11 97.1 16.8 193 176-379 14-214 (504)
71 PRK14956 DNA polymerase III su 98.6 6.9E-07 1.5E-11 96.6 13.7 193 176-378 18-218 (484)
72 PRK09112 DNA polymerase III su 98.6 2.2E-06 4.7E-11 91.0 17.0 200 174-382 21-240 (351)
73 PRK14962 DNA polymerase III su 98.6 3.5E-06 7.6E-11 93.0 19.1 186 176-386 14-223 (472)
74 PLN03025 replication factor C 98.6 9.4E-07 2E-11 93.8 14.2 181 176-379 13-197 (319)
75 KOG1909 Ran GTPase-activating 98.6 6E-09 1.3E-13 104.0 -2.3 227 561-811 33-309 (382)
76 PRK08727 hypothetical protein; 98.5 1.6E-06 3.5E-11 87.2 14.6 147 199-379 41-201 (233)
77 PRK07940 DNA polymerase III su 98.5 2.5E-06 5.5E-11 91.8 16.9 192 176-382 5-213 (394)
78 TIGR02397 dnaX_nterm DNA polym 98.5 3.6E-06 7.8E-11 91.6 18.4 182 176-383 14-219 (355)
79 PRK07994 DNA polymerase III su 98.5 1.6E-06 3.4E-11 98.1 15.6 197 176-382 16-220 (647)
80 PRK08903 DnaA regulatory inact 98.5 1.3E-06 2.9E-11 88.1 13.7 170 179-386 22-203 (227)
81 TIGR00678 holB DNA polymerase 98.5 4.2E-06 9.1E-11 81.6 16.5 89 281-377 95-186 (188)
82 PRK14955 DNA polymerase III su 98.5 1.6E-06 3.4E-11 94.7 14.7 203 176-381 16-227 (397)
83 cd00009 AAA The AAA+ (ATPases 98.5 9.4E-07 2E-11 82.6 11.3 123 179-321 1-131 (151)
84 PRK08691 DNA polymerase III su 98.5 1.7E-06 3.8E-11 97.2 15.0 197 176-382 16-220 (709)
85 PRK05642 DNA replication initi 98.5 1.6E-06 3.4E-11 87.2 13.4 154 199-386 45-212 (234)
86 PRK14964 DNA polymerase III su 98.5 3.9E-06 8.5E-11 92.1 17.1 194 176-379 13-214 (491)
87 PRK07471 DNA polymerase III su 98.5 2.9E-06 6.3E-11 90.6 15.5 198 175-382 18-238 (365)
88 PRK14958 DNA polymerase III su 98.5 3E-06 6.5E-11 94.6 15.9 196 176-381 16-219 (509)
89 PRK05896 DNA polymerase III su 98.5 1.6E-06 3.5E-11 96.4 13.2 198 176-383 16-222 (605)
90 KOG2120 SCF ubiquitin ligase, 98.4 2.9E-09 6.4E-14 103.5 -7.4 112 699-810 256-373 (419)
91 PRK14951 DNA polymerase III su 98.4 5.5E-06 1.2E-10 93.6 17.0 200 176-382 16-225 (618)
92 PRK13341 recombination factor 98.4 4.2E-06 9.2E-11 96.8 15.9 171 176-379 28-214 (725)
93 KOG2028 ATPase related to the 98.4 3.3E-06 7.2E-11 84.8 12.5 176 173-377 141-331 (554)
94 PRK14970 DNA polymerase III su 98.4 8.3E-06 1.8E-10 88.8 16.8 180 176-379 17-206 (367)
95 PRK09087 hypothetical protein; 98.4 4.9E-06 1.1E-10 82.9 13.5 143 199-384 44-197 (226)
96 PRK14087 dnaA chromosomal repl 98.4 7.6E-06 1.6E-10 90.3 16.0 169 199-386 141-323 (450)
97 PRK14969 DNA polymerase III su 98.4 7.5E-06 1.6E-10 92.2 15.7 197 176-382 16-221 (527)
98 TIGR01242 26Sp45 26S proteasom 98.3 7E-06 1.5E-10 89.0 14.9 176 174-376 120-328 (364)
99 PRK14959 DNA polymerase III su 98.3 1.2E-05 2.5E-10 90.3 16.7 201 176-386 16-225 (624)
100 PRK14954 DNA polymerase III su 98.3 1.3E-05 2.7E-10 91.1 17.1 200 176-378 16-224 (620)
101 PRK09111 DNA polymerase III su 98.3 1.6E-05 3.5E-10 90.1 17.2 201 175-382 23-233 (598)
102 PF00308 Bac_DnaA: Bacterial d 98.3 9.2E-06 2E-10 80.7 13.6 182 178-384 11-210 (219)
103 PRK08451 DNA polymerase III su 98.3 2.2E-05 4.8E-10 87.1 17.8 197 176-382 14-218 (535)
104 KOG0531 Protein phosphatase 1, 98.3 8.7E-08 1.9E-12 105.9 -1.0 193 584-787 89-289 (414)
105 PRK07133 DNA polymerase III su 98.3 1.9E-05 4.2E-10 89.9 17.3 189 176-379 18-216 (725)
106 PF13855 LRR_8: Leucine rich r 98.3 3.2E-07 6.9E-12 70.5 2.1 59 729-787 2-61 (61)
107 TIGR02903 spore_lon_C ATP-depe 98.3 8.5E-06 1.8E-10 93.5 14.5 204 176-384 154-397 (615)
108 PRK14952 DNA polymerase III su 98.3 2.8E-05 6E-10 87.7 18.1 199 176-384 13-222 (584)
109 COG4886 Leucine-rich repeat (L 98.3 6.2E-07 1.3E-11 99.1 4.7 72 561-642 119-191 (394)
110 PRK14950 DNA polymerase III su 98.3 1.3E-05 2.9E-10 91.9 15.5 198 176-382 16-221 (585)
111 PRK07764 DNA polymerase III su 98.3 2.1E-05 4.5E-10 92.4 17.3 194 176-379 15-218 (824)
112 KOG2543 Origin recognition com 98.3 1.6E-05 3.5E-10 81.0 14.1 170 175-350 5-192 (438)
113 PRK14953 DNA polymerase III su 98.3 3.8E-05 8.3E-10 85.4 18.4 183 176-383 16-221 (486)
114 cd01128 rho_factor Transcripti 98.3 3.3E-06 7.2E-11 84.8 9.1 96 198-294 15-115 (249)
115 KOG0531 Protein phosphatase 1, 98.3 1.1E-07 2.4E-12 105.1 -1.9 239 587-836 69-317 (414)
116 KOG0532 Leucine-rich repeat (L 98.2 1.8E-07 4E-12 99.3 -0.7 132 581-717 112-248 (722)
117 PRK14971 DNA polymerase III su 98.2 3.5E-05 7.6E-10 88.2 17.6 175 176-379 17-219 (614)
118 PRK06305 DNA polymerase III su 98.2 2.6E-05 5.6E-10 86.2 15.9 194 176-378 17-218 (451)
119 PRK06620 hypothetical protein; 98.2 3.1E-05 6.8E-10 76.4 14.2 137 200-382 45-189 (214)
120 TIGR02881 spore_V_K stage V sp 98.2 1.4E-05 3.1E-10 82.2 12.0 158 177-354 7-194 (261)
121 PHA02544 44 clamp loader, smal 98.2 1.7E-05 3.7E-10 84.6 13.0 146 176-349 21-171 (316)
122 COG2255 RuvB Holliday junction 98.2 3.8E-05 8.3E-10 75.3 13.8 261 176-487 26-312 (332)
123 PRK03992 proteasome-activating 98.2 2.1E-05 4.6E-10 85.5 13.6 176 174-376 129-337 (389)
124 PF05621 TniB: Bacterial TniB 98.2 6.1E-05 1.3E-09 76.1 15.7 202 176-381 34-260 (302)
125 TIGR03345 VI_ClpV1 type VI sec 98.2 1.4E-05 2.9E-10 95.2 13.0 178 176-376 187-390 (852)
126 PRK06647 DNA polymerase III su 98.2 7.4E-05 1.6E-09 84.4 18.2 196 176-381 16-219 (563)
127 TIGR02880 cbbX_cfxQ probable R 98.2 5.6E-05 1.2E-09 78.4 15.9 134 200-353 59-210 (284)
128 PRK14965 DNA polymerase III su 98.1 7.7E-05 1.7E-09 85.2 17.9 197 176-382 16-221 (576)
129 PRK14948 DNA polymerase III su 98.1 8.2E-05 1.8E-09 85.1 18.0 199 176-382 16-222 (620)
130 PRK09376 rho transcription ter 98.1 5.5E-06 1.2E-10 86.5 7.7 96 198-294 168-268 (416)
131 PRK14088 dnaA chromosomal repl 98.1 6.2E-05 1.4E-09 83.1 16.2 160 199-382 130-305 (440)
132 PRK07399 DNA polymerase III su 98.1 0.00026 5.7E-09 74.2 19.5 197 176-382 4-221 (314)
133 CHL00181 cbbX CbbX; Provisiona 98.1 9.8E-05 2.1E-09 76.5 16.1 136 199-354 59-212 (287)
134 COG3267 ExeA Type II secretory 98.1 0.00024 5.3E-09 69.1 17.4 181 198-385 50-248 (269)
135 PRK05563 DNA polymerase III su 98.1 0.00012 2.7E-09 83.0 17.9 195 176-380 16-218 (559)
136 PRK05707 DNA polymerase III su 98.1 0.00012 2.6E-09 77.1 16.3 172 198-382 21-203 (328)
137 KOG2120 SCF ubiquitin ligase, 98.0 9.5E-08 2.1E-12 93.2 -6.6 58 561-625 188-246 (419)
138 TIGR00362 DnaA chromosomal rep 98.0 0.00011 2.4E-09 81.0 16.2 182 176-382 111-310 (405)
139 PRK00149 dnaA chromosomal repl 98.0 0.0001 2.3E-09 82.3 15.7 160 198-382 147-322 (450)
140 KOG0989 Replication factor C, 98.0 2E-05 4.3E-10 78.1 8.5 184 175-377 35-225 (346)
141 PF13855 LRR_8: Leucine rich r 98.0 5.2E-06 1.1E-10 63.7 3.6 55 561-624 4-60 (61)
142 TIGR02639 ClpA ATP-dependent C 98.0 5E-05 1.1E-09 89.8 13.5 156 176-351 182-358 (731)
143 PRK12422 chromosomal replicati 98.0 0.00016 3.5E-09 79.6 16.5 153 199-376 141-307 (445)
144 KOG2227 Pre-initiation complex 98.0 0.00013 2.7E-09 76.7 14.5 199 173-377 147-363 (529)
145 COG5238 RNA1 Ran GTPase-activa 98.0 1.3E-06 2.7E-11 84.4 -0.1 236 588-835 28-314 (388)
146 KOG2982 Uncharacterized conser 98.0 1.2E-06 2.6E-11 85.6 -0.6 80 588-667 69-157 (418)
147 KOG1859 Leucine-rich repeat pr 98.0 1.1E-07 2.4E-12 103.4 -8.5 125 657-787 165-291 (1096)
148 PF12799 LRR_4: Leucine Rich r 97.9 8.7E-06 1.9E-10 57.1 3.4 39 590-629 1-39 (44)
149 PLN03150 hypothetical protein; 97.9 8.5E-06 1.8E-10 94.4 5.3 104 680-786 420-526 (623)
150 TIGR00767 rho transcription te 97.9 4E-05 8.6E-10 80.7 9.6 96 198-294 167-267 (415)
151 PRK14086 dnaA chromosomal repl 97.9 0.00023 5E-09 79.7 15.3 159 199-382 314-488 (617)
152 PF05673 DUF815: Protein of un 97.9 0.00037 8E-09 68.2 14.7 120 173-322 24-153 (249)
153 TIGR03346 chaperone_ClpB ATP-d 97.8 9.7E-05 2.1E-09 88.8 12.3 155 176-352 173-350 (852)
154 CHL00095 clpC Clp protease ATP 97.8 6.2E-05 1.3E-09 90.2 10.4 156 176-350 179-353 (821)
155 PRK10865 protein disaggregatio 97.8 0.00018 3.9E-09 86.1 14.0 154 176-351 178-354 (857)
156 PTZ00454 26S protease regulato 97.8 0.00028 6.1E-09 76.3 14.2 175 175-376 144-351 (398)
157 TIGR00763 lon ATP-dependent pr 97.8 0.00066 1.4E-08 80.9 18.6 161 175-351 319-505 (775)
158 TIGR03689 pup_AAA proteasome A 97.8 0.00019 4.1E-09 79.3 12.8 161 176-352 182-379 (512)
159 KOG0991 Replication factor C, 97.8 0.00017 3.6E-09 68.4 10.5 45 176-222 27-71 (333)
160 PRK10536 hypothetical protein; 97.8 5.7E-05 1.2E-09 74.8 7.8 134 176-322 55-215 (262)
161 PF00004 AAA: ATPase family as 97.8 9.4E-05 2E-09 67.4 8.5 95 202-320 1-112 (132)
162 PRK06871 DNA polymerase III su 97.8 0.0011 2.4E-08 69.4 17.1 179 186-379 12-200 (325)
163 PRK15386 type III secretion pr 97.8 6.6E-05 1.4E-09 79.6 8.1 43 586-631 48-90 (426)
164 PTZ00361 26 proteosome regulat 97.8 0.00015 3.1E-09 79.1 10.9 174 176-376 183-389 (438)
165 CHL00176 ftsH cell division pr 97.8 0.00033 7.2E-09 80.3 14.3 172 176-374 183-386 (638)
166 PLN03150 hypothetical protein; 97.7 2.1E-05 4.6E-10 91.1 4.4 110 729-840 419-532 (623)
167 PRK08769 DNA polymerase III su 97.7 0.0011 2.4E-08 69.2 16.5 179 184-382 12-208 (319)
168 COG1373 Predicted ATPase (AAA+ 97.7 0.00057 1.2E-08 74.3 14.8 148 201-381 39-191 (398)
169 PRK11331 5-methylcytosine-spec 97.7 7.5E-05 1.6E-09 80.1 7.7 119 176-305 175-298 (459)
170 PRK15386 type III secretion pr 97.7 0.00011 2.3E-09 78.0 8.6 32 800-834 156-187 (426)
171 KOG4341 F-box protein containi 97.7 7.9E-07 1.7E-11 91.2 -6.9 235 587-838 187-440 (483)
172 PRK06090 DNA polymerase III su 97.7 0.004 8.7E-08 65.0 19.5 196 185-403 12-219 (319)
173 PRK11034 clpA ATP-dependent Cl 97.7 0.00013 2.8E-09 85.2 9.4 157 176-351 186-362 (758)
174 PRK08058 DNA polymerase III su 97.7 0.00077 1.7E-08 71.7 14.4 165 178-350 7-181 (329)
175 KOG1859 Leucine-rich repeat pr 97.7 1.1E-06 2.5E-11 95.8 -7.1 105 582-689 179-290 (1096)
176 smart00382 AAA ATPases associa 97.7 0.00019 4.1E-09 66.3 8.7 40 199-240 2-41 (148)
177 TIGR01241 FtsH_fam ATP-depende 97.6 0.00045 9.8E-09 78.2 13.0 175 175-376 54-260 (495)
178 PRK07993 DNA polymerase III su 97.6 0.002 4.3E-08 68.3 16.4 179 185-379 11-201 (334)
179 COG0593 DnaA ATPase involved i 97.6 0.0019 4.1E-08 68.9 15.9 173 176-374 88-278 (408)
180 KOG4341 F-box protein containi 97.6 1.3E-06 2.8E-11 89.6 -7.8 253 586-855 160-437 (483)
181 PF10443 RNA12: RNA12 protein; 97.5 0.0082 1.8E-07 63.8 19.6 210 181-399 1-297 (431)
182 KOG0733 Nuclear AAA ATPase (VC 97.5 0.0013 2.8E-08 71.4 13.6 174 176-376 190-396 (802)
183 TIGR00602 rad24 checkpoint pro 97.5 0.00075 1.6E-08 76.8 12.5 48 175-222 83-133 (637)
184 PTZ00494 tuzin-like protein; P 97.5 0.029 6.4E-07 59.2 22.6 168 173-351 368-544 (664)
185 COG2812 DnaX DNA polymerase II 97.5 0.00072 1.6E-08 74.3 11.4 192 176-377 16-215 (515)
186 PRK08116 hypothetical protein; 97.5 0.00054 1.2E-08 70.3 9.8 103 199-320 114-221 (268)
187 PF13177 DNA_pol3_delta2: DNA 97.4 0.00086 1.9E-08 63.1 9.8 136 180-339 1-162 (162)
188 COG1222 RPT1 ATP-dependent 26S 97.4 0.0035 7.6E-08 64.0 14.3 182 177-386 152-371 (406)
189 TIGR02640 gas_vesic_GvpN gas v 97.4 0.005 1.1E-07 63.3 15.9 54 185-247 11-64 (262)
190 KOG0735 AAA+-type ATPase [Post 97.4 0.0035 7.6E-08 69.4 14.9 185 176-382 408-616 (952)
191 TIGR01243 CDC48 AAA family ATP 97.4 0.0019 4.1E-08 76.9 14.2 174 176-376 453-657 (733)
192 TIGR02639 ClpA ATP-dependent C 97.4 0.0034 7.4E-08 74.5 16.2 117 175-305 453-578 (731)
193 COG1223 Predicted ATPase (AAA+ 97.4 0.0023 4.9E-08 62.1 11.8 176 174-376 119-319 (368)
194 KOG0730 AAA+-type ATPase [Post 97.4 0.0055 1.2E-07 67.7 16.1 173 177-376 435-637 (693)
195 KOG1644 U2-associated snRNP A' 97.4 0.00028 6E-09 65.8 5.4 104 703-809 42-149 (233)
196 PRK10865 protein disaggregatio 97.4 0.02 4.3E-07 69.0 22.4 47 175-221 567-620 (857)
197 COG0466 Lon ATP-dependent Lon 97.4 0.0012 2.5E-08 73.5 11.0 161 175-351 322-508 (782)
198 KOG0733 Nuclear AAA ATPase (VC 97.4 0.0017 3.7E-08 70.5 11.8 131 199-353 545-694 (802)
199 PRK10787 DNA-binding ATP-depen 97.4 0.0015 3.4E-08 77.0 12.7 161 175-351 321-506 (784)
200 PF12799 LRR_4: Leucine Rich r 97.3 0.00019 4.1E-09 50.3 3.1 37 561-606 4-40 (44)
201 PRK06964 DNA polymerase III su 97.3 0.003 6.4E-08 66.7 13.4 92 281-382 131-225 (342)
202 CHL00195 ycf46 Ycf46; Provisio 97.3 0.0026 5.5E-08 70.7 13.5 176 176-376 228-429 (489)
203 TIGR01243 CDC48 AAA family ATP 97.3 0.0018 4E-08 77.1 13.0 177 175-378 177-383 (733)
204 KOG2982 Uncharacterized conser 97.3 2.5E-05 5.5E-10 76.6 -2.1 62 750-811 198-260 (418)
205 COG0470 HolB ATPase involved i 97.3 0.0025 5.3E-08 68.4 12.7 145 177-341 2-171 (325)
206 KOG2035 Replication factor C, 97.3 0.015 3.2E-07 57.3 16.2 226 178-423 15-282 (351)
207 TIGR03345 VI_ClpV1 type VI sec 97.3 0.0047 1E-07 73.9 15.7 134 175-319 565-718 (852)
208 KOG2004 Mitochondrial ATP-depe 97.2 0.0024 5.3E-08 70.7 11.5 104 175-294 410-517 (906)
209 KOG0734 AAA+-type ATPase conta 97.2 0.0052 1.1E-07 65.8 13.5 121 176-320 304-449 (752)
210 PRK08181 transposase; Validate 97.2 0.00083 1.8E-08 68.4 7.4 99 200-320 107-209 (269)
211 TIGR03346 chaperone_ClpB ATP-d 97.2 0.015 3.3E-07 70.2 19.3 134 175-319 564-717 (852)
212 PF04665 Pox_A32: Poxvirus A32 97.2 0.0018 3.8E-08 64.1 9.2 36 200-237 14-49 (241)
213 PF02562 PhoH: PhoH-like prote 97.2 0.00063 1.4E-08 65.7 5.8 53 180-236 4-56 (205)
214 TIGR02902 spore_lonB ATP-depen 97.2 0.002 4.3E-08 73.1 10.7 44 176-221 65-108 (531)
215 PRK09361 radB DNA repair and r 97.2 0.0018 3.9E-08 65.2 9.3 55 188-245 12-66 (225)
216 COG0542 clpA ATP-binding subun 97.2 0.017 3.7E-07 66.4 17.9 120 175-306 490-619 (786)
217 KOG1514 Origin recognition com 97.2 0.016 3.4E-07 64.6 16.7 205 174-382 394-621 (767)
218 PRK12608 transcription termina 97.1 0.0021 4.6E-08 67.6 9.7 106 185-293 120-231 (380)
219 KOG0731 AAA+-type ATPase conta 97.1 0.0064 1.4E-07 69.3 14.1 177 176-378 311-520 (774)
220 PRK06526 transposase; Provisio 97.1 0.00056 1.2E-08 69.4 5.2 24 199-222 98-121 (254)
221 PRK08699 DNA polymerase III su 97.1 0.0024 5.2E-08 67.3 10.1 88 281-378 112-202 (325)
222 PRK04132 replication factor C 97.1 0.01 2.3E-07 69.7 16.1 155 204-380 569-729 (846)
223 TIGR02237 recomb_radB DNA repa 97.1 0.0017 3.7E-08 64.5 8.5 53 192-247 5-57 (209)
224 PLN00020 ribulose bisphosphate 97.1 0.0087 1.9E-07 62.3 13.3 25 197-221 146-170 (413)
225 cd01120 RecA-like_NTPases RecA 97.1 0.0024 5.1E-08 60.6 8.9 40 201-242 1-40 (165)
226 COG5238 RNA1 Ran GTPase-activa 97.1 6.1E-05 1.3E-09 73.1 -2.1 234 561-809 33-312 (388)
227 PF07693 KAP_NTPase: KAP famil 97.1 0.031 6.8E-07 59.8 18.4 41 182-222 2-43 (325)
228 PF14532 Sigma54_activ_2: Sigm 97.0 0.00057 1.2E-08 62.6 4.0 44 179-222 1-44 (138)
229 PRK04296 thymidine kinase; Pro 97.0 0.0011 2.4E-08 64.3 6.2 113 200-321 3-117 (190)
230 KOG2228 Origin recognition com 97.0 0.014 3E-07 59.2 13.7 175 175-351 23-219 (408)
231 KOG3665 ZYG-1-like serine/thre 97.0 0.00011 2.3E-09 85.1 -1.2 129 656-789 122-264 (699)
232 PRK12377 putative replication 97.0 0.0016 3.4E-08 65.5 7.3 38 199-238 101-138 (248)
233 PHA00729 NTP-binding motif con 97.0 0.0041 8.8E-08 60.9 9.8 32 188-221 8-39 (226)
234 KOG1644 U2-associated snRNP A' 97.0 0.00088 1.9E-08 62.6 4.5 81 656-737 42-122 (233)
235 PF00448 SRP54: SRP54-type pro 97.0 0.0021 4.5E-08 62.5 7.4 92 199-292 1-93 (196)
236 PRK09183 transposase/IS protei 97.0 0.0019 4.1E-08 66.0 7.3 23 199-221 102-124 (259)
237 PRK08118 topology modulation p 97.0 0.00035 7.5E-09 66.2 1.8 34 201-234 3-37 (167)
238 KOG0741 AAA+-type ATPase [Post 97.0 0.0093 2E-07 63.8 12.3 149 197-372 536-704 (744)
239 PRK11608 pspF phage shock prot 97.0 0.012 2.6E-07 62.5 13.6 46 176-221 6-51 (326)
240 KOG3665 ZYG-1-like serine/thre 96.9 0.00024 5.2E-09 82.2 0.6 132 676-809 120-259 (699)
241 TIGR01817 nifA Nif-specific re 96.9 0.022 4.7E-07 65.4 16.4 49 174-222 194-242 (534)
242 TIGR02974 phageshock_pspF psp 96.9 0.019 4.1E-07 60.9 14.5 44 178-221 1-44 (329)
243 cd01393 recA_like RecA is a b 96.9 0.0056 1.2E-07 61.6 10.1 55 190-246 10-70 (226)
244 cd01394 radB RadB. The archaea 96.8 0.0046 1E-07 61.8 8.9 53 188-242 8-60 (218)
245 KOG4579 Leucine-rich repeat (L 96.8 0.00016 3.5E-09 62.9 -1.4 56 586-642 49-105 (177)
246 cd01123 Rad51_DMC1_radA Rad51_ 96.8 0.0061 1.3E-07 61.8 9.9 61 192-253 12-76 (235)
247 PRK15429 formate hydrogenlyase 96.8 0.02 4.4E-07 67.7 15.7 62 176-239 376-437 (686)
248 PRK07952 DNA replication prote 96.8 0.004 8.6E-08 62.5 8.2 37 199-237 99-135 (244)
249 KOG0728 26S proteasome regulat 96.8 0.028 6.1E-07 54.2 13.3 153 177-353 147-333 (404)
250 KOG1969 DNA replication checkp 96.8 0.0024 5.2E-08 71.0 6.9 76 197-294 324-399 (877)
251 CHL00095 clpC Clp protease ATP 96.8 0.0062 1.3E-07 73.3 11.2 134 175-320 508-662 (821)
252 cd00983 recA RecA is a bacter 96.8 0.003 6.5E-08 65.8 7.3 97 189-292 44-143 (325)
253 cd00561 CobA_CobO_BtuR ATP:cor 96.8 0.0096 2.1E-07 55.0 9.5 119 200-321 3-139 (159)
254 KOG2739 Leucine-rich acidic nu 96.8 0.00055 1.2E-08 66.9 1.5 104 656-760 43-152 (260)
255 PRK09354 recA recombinase A; P 96.8 0.0038 8.3E-08 65.5 7.7 98 188-292 48-148 (349)
256 PRK11034 clpA ATP-dependent Cl 96.8 0.0075 1.6E-07 70.7 10.9 116 176-305 458-582 (758)
257 COG2884 FtsE Predicted ATPase 96.8 0.0076 1.7E-07 56.0 8.5 61 269-329 142-206 (223)
258 PF08423 Rad51: Rad51; InterP 96.8 0.0046 1E-07 63.0 8.1 67 188-255 27-97 (256)
259 PRK06921 hypothetical protein; 96.8 0.0053 1.2E-07 62.9 8.6 37 199-237 117-154 (266)
260 PRK08939 primosomal protein Dn 96.7 0.0034 7.3E-08 65.6 7.2 117 180-318 135-259 (306)
261 PRK05022 anaerobic nitric oxid 96.7 0.042 9.1E-07 62.5 16.6 65 174-240 185-249 (509)
262 smart00763 AAA_PrkA PrkA AAA d 96.7 0.0012 2.6E-08 69.1 3.6 46 177-222 52-101 (361)
263 PLN03187 meiotic recombination 96.7 0.0064 1.4E-07 64.2 9.0 66 190-256 117-186 (344)
264 cd01133 F1-ATPase_beta F1 ATP 96.7 0.0079 1.7E-07 60.9 9.0 95 198-294 68-175 (274)
265 TIGR02238 recomb_DMC1 meiotic 96.7 0.0077 1.7E-07 63.1 9.3 68 188-256 85-156 (313)
266 TIGR02012 tigrfam_recA protein 96.7 0.005 1.1E-07 64.1 7.7 97 189-292 44-143 (321)
267 KOG4579 Leucine-rich repeat (L 96.7 0.00029 6.3E-09 61.3 -1.1 72 561-642 56-128 (177)
268 cd03115 SRP The signal recogni 96.7 0.012 2.5E-07 56.5 9.7 90 201-293 2-93 (173)
269 COG0468 RecA RecA/RadA recombi 96.6 0.011 2.4E-07 60.1 9.8 99 191-292 52-151 (279)
270 COG4608 AppF ABC-type oligopep 96.6 0.0096 2.1E-07 59.2 9.1 133 198-335 38-185 (268)
271 cd03214 ABC_Iron-Siderophores_ 96.6 0.011 2.5E-07 56.9 9.6 123 199-324 25-162 (180)
272 PRK11889 flhF flagellar biosyn 96.6 0.02 4.3E-07 60.6 11.8 102 198-305 240-347 (436)
273 COG1484 DnaC DNA replication p 96.6 0.0062 1.3E-07 61.8 8.0 75 198-293 104-178 (254)
274 PRK07132 DNA polymerase III su 96.6 0.1 2.3E-06 54.2 16.9 152 198-381 17-184 (299)
275 PRK06067 flagellar accessory p 96.6 0.011 2.5E-07 59.7 9.7 99 189-292 15-130 (234)
276 PF13207 AAA_17: AAA domain; P 96.6 0.0015 3.2E-08 58.4 2.8 21 201-221 1-21 (121)
277 PF13671 AAA_33: AAA domain; P 96.6 0.0064 1.4E-07 56.1 7.1 21 201-221 1-21 (143)
278 cd01131 PilT Pilus retraction 96.5 0.0047 1E-07 60.5 6.3 111 200-323 2-112 (198)
279 PF01695 IstB_IS21: IstB-like 96.5 0.0011 2.3E-08 63.5 1.6 37 199-237 47-83 (178)
280 TIGR02239 recomb_RAD51 DNA rep 96.5 0.01 2.2E-07 62.5 8.9 68 187-255 84-155 (316)
281 KOG0743 AAA+-type ATPase [Post 96.5 0.36 7.8E-06 51.6 20.1 154 199-389 235-417 (457)
282 PRK14974 cell division protein 96.5 0.014 3.1E-07 61.4 10.0 94 198-294 139-234 (336)
283 COG1875 NYN ribonuclease and A 96.5 0.0041 8.9E-08 63.6 5.6 136 181-322 229-390 (436)
284 COG0542 clpA ATP-binding subun 96.5 0.0037 8.1E-08 71.7 6.0 154 176-351 170-346 (786)
285 KOG0735 AAA+-type ATPase [Post 96.5 0.051 1.1E-06 60.6 14.0 174 178-378 669-872 (952)
286 cd03247 ABCC_cytochrome_bd The 96.5 0.017 3.6E-07 55.7 9.5 120 199-324 28-161 (178)
287 PRK05541 adenylylsulfate kinas 96.5 0.0089 1.9E-07 57.4 7.6 37 198-236 6-42 (176)
288 PRK06696 uridine kinase; Valid 96.5 0.0052 1.1E-07 61.5 6.1 41 181-221 3-44 (223)
289 PRK06835 DNA replication prote 96.5 0.0079 1.7E-07 63.4 7.7 37 199-237 183-219 (329)
290 TIGR03881 KaiC_arch_4 KaiC dom 96.4 0.03 6.6E-07 56.4 11.7 122 190-318 11-164 (229)
291 PRK10733 hflB ATP-dependent me 96.4 0.021 4.6E-07 66.5 11.8 172 177-375 153-356 (644)
292 KOG0739 AAA+-type ATPase [Post 96.4 0.051 1.1E-06 54.1 12.4 174 176-376 133-335 (439)
293 COG1136 SalX ABC-type antimicr 96.4 0.027 5.8E-07 55.1 10.6 59 269-327 147-210 (226)
294 PRK07667 uridine kinase; Provi 96.4 0.0052 1.1E-07 59.9 5.8 37 185-221 3-39 (193)
295 TIGR02858 spore_III_AA stage I 96.4 0.05 1.1E-06 55.6 13.0 129 185-324 98-233 (270)
296 PRK11388 DNA-binding transcrip 96.4 0.053 1.1E-06 63.8 15.0 46 176-221 325-370 (638)
297 PTZ00035 Rad51 protein; Provis 96.3 0.02 4.4E-07 60.7 10.1 68 187-255 106-177 (337)
298 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.3 0.03 6.5E-07 51.6 10.0 104 199-325 26-132 (144)
299 TIGR02236 recomb_radA DNA repa 96.3 0.023 4.9E-07 60.3 10.5 66 189-255 85-154 (310)
300 PRK07261 topology modulation p 96.3 0.0058 1.3E-07 58.2 5.3 22 201-222 2-23 (171)
301 PRK04301 radA DNA repair and r 96.3 0.022 4.7E-07 60.5 10.2 67 188-255 91-161 (317)
302 cd03238 ABC_UvrA The excision 96.3 0.02 4.2E-07 54.6 8.9 116 199-324 21-153 (176)
303 PRK15455 PrkA family serine pr 96.3 0.0032 7E-08 69.4 3.8 45 177-221 77-125 (644)
304 TIGR03877 thermo_KaiC_1 KaiC d 96.3 0.02 4.2E-07 58.0 9.2 59 188-250 10-68 (237)
305 PRK00771 signal recognition pa 96.3 0.032 6.8E-07 61.1 11.3 58 198-257 94-152 (437)
306 TIGR00064 ftsY signal recognit 96.3 0.015 3.2E-07 59.8 8.2 91 198-292 71-164 (272)
307 KOG2739 Leucine-rich acidic nu 96.2 0.002 4.4E-08 63.0 1.7 37 750-786 90-127 (260)
308 COG2607 Predicted ATPase (AAA+ 96.2 0.02 4.4E-07 55.3 8.3 116 176-320 60-183 (287)
309 PRK14722 flhF flagellar biosyn 96.2 0.027 6E-07 60.0 10.2 89 199-293 137-226 (374)
310 cd03216 ABC_Carb_Monos_I This 96.2 0.019 4E-07 54.3 8.1 114 199-324 26-146 (163)
311 COG1066 Sms Predicted ATP-depe 96.2 0.024 5.2E-07 59.4 9.3 99 185-292 79-178 (456)
312 cd01121 Sms Sms (bacterial rad 96.2 0.015 3.2E-07 62.5 8.1 99 186-292 69-168 (372)
313 PLN03186 DNA repair protein RA 96.2 0.021 4.4E-07 60.5 8.9 68 188-256 112-183 (342)
314 PRK08533 flagellar accessory p 96.2 0.024 5.3E-07 56.8 9.1 50 197-250 22-71 (230)
315 PRK04040 adenylate kinase; Pro 96.2 0.015 3.2E-07 56.2 7.2 22 200-221 3-24 (188)
316 COG1102 Cmk Cytidylate kinase 96.1 0.0097 2.1E-07 53.7 5.2 44 201-257 2-45 (179)
317 cd01124 KaiC KaiC is a circadi 96.1 0.024 5.3E-07 55.0 8.6 45 201-249 1-45 (187)
318 KOG0736 Peroxisome assembly fa 96.1 0.062 1.3E-06 60.6 12.4 94 177-294 673-776 (953)
319 TIGR00708 cobA cob(I)alamin ad 96.1 0.049 1.1E-06 51.1 9.9 119 199-321 5-141 (173)
320 COG1618 Predicted nucleotide k 96.1 0.0049 1.1E-07 55.6 3.1 23 200-222 6-28 (179)
321 PF10236 DAP3: Mitochondrial r 96.1 0.19 4.1E-06 52.8 15.5 48 332-379 258-306 (309)
322 PRK10820 DNA-binding transcrip 96.0 0.065 1.4E-06 60.9 12.9 47 175-221 203-249 (520)
323 KOG0727 26S proteasome regulat 96.0 0.089 1.9E-06 51.0 11.5 47 176-222 155-212 (408)
324 PRK13531 regulatory ATPase Rav 96.0 0.0058 1.3E-07 66.5 4.1 42 176-221 20-61 (498)
325 cd00544 CobU Adenosylcobinamid 96.0 0.021 4.5E-07 53.9 7.4 44 202-251 2-45 (169)
326 PF13604 AAA_30: AAA domain; P 96.0 0.025 5.5E-07 55.2 8.2 110 199-324 18-135 (196)
327 PF00560 LRR_1: Leucine Rich R 96.0 0.003 6.5E-08 36.7 1.0 21 591-611 1-21 (22)
328 COG0464 SpoVK ATPases of the A 96.0 0.052 1.1E-06 61.8 11.9 153 197-374 274-445 (494)
329 PRK05986 cob(I)alamin adenolsy 96.0 0.054 1.2E-06 51.6 9.8 120 199-321 22-159 (191)
330 cd03230 ABC_DR_subfamily_A Thi 96.0 0.028 6.1E-07 53.8 8.2 121 199-325 26-160 (173)
331 cd03223 ABCD_peroxisomal_ALDP 96.0 0.058 1.3E-06 51.1 10.3 113 199-324 27-152 (166)
332 PRK12723 flagellar biosynthesi 96.0 0.064 1.4E-06 57.8 11.7 102 198-305 173-281 (388)
333 TIGR03499 FlhF flagellar biosy 96.0 0.021 4.7E-07 59.2 7.9 88 198-291 193-281 (282)
334 cd03228 ABCC_MRP_Like The MRP 96.0 0.034 7.3E-07 53.1 8.7 120 199-325 28-160 (171)
335 PF06745 KaiC: KaiC; InterPro 96.0 0.01 2.2E-07 59.8 5.3 96 191-291 11-124 (226)
336 PRK04328 hypothetical protein; 95.9 0.024 5.1E-07 57.8 7.9 63 189-256 13-75 (249)
337 PRK05973 replicative DNA helic 95.9 0.035 7.6E-07 55.3 8.8 56 192-251 57-112 (237)
338 PRK12726 flagellar biosynthesi 95.9 0.072 1.6E-06 56.3 11.3 101 198-304 205-311 (407)
339 cd03229 ABC_Class3 This class 95.9 0.021 4.6E-07 54.9 7.1 23 199-221 26-48 (178)
340 KOG0729 26S proteasome regulat 95.9 0.08 1.7E-06 51.7 10.7 52 176-229 177-239 (435)
341 PF00485 PRK: Phosphoribulokin 95.9 0.038 8.3E-07 54.0 8.9 83 201-286 1-87 (194)
342 cd03222 ABC_RNaseL_inhibitor T 95.9 0.032 6.9E-07 53.2 8.1 102 199-325 25-137 (177)
343 TIGR00382 clpX endopeptidase C 95.9 0.044 9.5E-07 59.4 10.0 47 175-221 76-138 (413)
344 KOG1970 Checkpoint RAD17-RFC c 95.9 0.16 3.5E-06 55.2 13.8 40 182-221 88-132 (634)
345 TIGR00959 ffh signal recogniti 95.8 0.048 1E-06 59.5 10.2 59 198-257 98-157 (428)
346 PF03308 ArgK: ArgK protein; 95.8 0.011 2.3E-07 58.5 4.6 64 184-247 14-77 (266)
347 TIGR00390 hslU ATP-dependent p 95.8 0.016 3.4E-07 61.9 6.2 76 176-253 12-103 (441)
348 PRK12724 flagellar biosynthesi 95.8 0.041 9E-07 59.1 9.3 23 199-221 223-245 (432)
349 TIGR03878 thermo_KaiC_2 KaiC d 95.8 0.039 8.5E-07 56.5 9.0 45 194-240 31-75 (259)
350 PRK09270 nucleoside triphospha 95.8 0.029 6.2E-07 56.5 7.9 26 196-221 30-55 (229)
351 PF07724 AAA_2: AAA domain (Cd 95.8 0.0096 2.1E-07 56.4 4.1 40 199-240 3-43 (171)
352 COG1126 GlnQ ABC-type polar am 95.8 0.065 1.4E-06 51.3 9.4 124 199-327 28-203 (240)
353 PRK05703 flhF flagellar biosyn 95.8 0.076 1.7E-06 58.3 11.6 88 199-292 221-309 (424)
354 KOG0744 AAA+-type ATPase [Post 95.8 0.026 5.6E-07 56.9 7.0 82 199-294 177-262 (423)
355 COG1121 ZnuC ABC-type Mn/Zn tr 95.7 0.026 5.6E-07 56.2 6.9 125 199-325 30-204 (254)
356 PF12061 DUF3542: Protein of u 95.7 0.032 6.9E-07 55.7 7.4 78 4-81 296-374 (402)
357 PF00154 RecA: recA bacterial 95.7 0.039 8.5E-07 57.4 8.5 90 197-293 51-142 (322)
358 PF03215 Rad17: Rad17 cell cyc 95.7 0.038 8.2E-07 62.0 9.1 56 177-236 20-78 (519)
359 cd01122 GP4d_helicase GP4d_hel 95.7 0.079 1.7E-06 55.0 11.0 53 198-253 29-81 (271)
360 cd01129 PulE-GspE PulE/GspE Th 95.7 0.034 7.3E-07 57.0 8.0 109 179-303 62-170 (264)
361 CHL00206 ycf2 Ycf2; Provisiona 95.7 0.096 2.1E-06 65.6 12.9 25 198-222 1629-1653(2281)
362 PF01583 APS_kinase: Adenylyls 95.7 0.0095 2.1E-07 54.8 3.5 36 199-236 2-37 (156)
363 PRK13539 cytochrome c biogenes 95.7 0.085 1.8E-06 52.1 10.6 25 198-222 27-51 (207)
364 KOG2123 Uncharacterized conser 95.7 0.00081 1.8E-08 65.8 -3.6 70 561-642 22-93 (388)
365 PRK05342 clpX ATP-dependent pr 95.7 0.02 4.3E-07 62.4 6.5 47 175-221 70-130 (412)
366 COG0465 HflB ATP-dependent Zn 95.7 0.1 2.2E-06 58.7 11.9 178 173-377 147-356 (596)
367 PF07728 AAA_5: AAA domain (dy 95.7 0.014 3.1E-07 53.4 4.7 42 202-248 2-43 (139)
368 TIGR00150 HI0065_YjeE ATPase, 95.7 0.012 2.6E-07 52.6 3.9 40 183-222 6-45 (133)
369 PRK06002 fliI flagellum-specif 95.7 0.05 1.1E-06 59.2 9.3 94 198-294 164-266 (450)
370 PF13481 AAA_25: AAA domain; P 95.7 0.028 6.1E-07 54.9 7.0 51 199-251 32-90 (193)
371 COG1703 ArgK Putative periplas 95.7 0.01 2.2E-07 59.4 3.8 64 186-249 38-101 (323)
372 KOG0738 AAA+-type ATPase [Post 95.7 0.091 2E-06 54.5 10.5 46 176-221 212-267 (491)
373 PF05659 RPW8: Arabidopsis bro 95.7 0.16 3.5E-06 46.4 11.2 78 2-79 7-85 (147)
374 PRK05800 cobU adenosylcobinami 95.7 0.0094 2E-07 56.4 3.4 21 201-221 3-23 (170)
375 PF07726 AAA_3: ATPase family 95.6 0.0073 1.6E-07 52.9 2.4 28 202-231 2-29 (131)
376 PF08433 KTI12: Chromatin asso 95.6 0.03 6.5E-07 57.3 7.1 83 200-297 2-85 (270)
377 cd03246 ABCC_Protease_Secretio 95.6 0.059 1.3E-06 51.5 8.8 122 199-324 28-160 (173)
378 PRK13695 putative NTPase; Prov 95.6 0.015 3.3E-07 55.6 4.7 22 201-222 2-23 (174)
379 TIGR00416 sms DNA repair prote 95.6 0.052 1.1E-06 60.2 9.4 53 185-239 80-132 (454)
380 PRK10867 signal recognition pa 95.6 0.076 1.7E-06 58.0 10.5 24 198-221 99-122 (433)
381 TIGR01359 UMP_CMP_kin_fam UMP- 95.6 0.039 8.5E-07 53.4 7.6 21 201-221 1-21 (183)
382 cd00267 ABC_ATPase ABC (ATP-bi 95.6 0.044 9.6E-07 51.4 7.7 118 199-326 25-146 (157)
383 COG4088 Predicted nucleotide k 95.6 0.024 5.3E-07 53.3 5.6 22 200-221 2-23 (261)
384 PF13238 AAA_18: AAA domain; P 95.6 0.008 1.7E-07 54.2 2.6 20 202-221 1-20 (129)
385 TIGR02329 propionate_PrpR prop 95.6 0.2 4.4E-06 56.6 14.1 46 176-221 212-257 (526)
386 TIGR01069 mutS2 MutS2 family p 95.5 0.014 3E-07 69.0 4.9 113 281-403 401-522 (771)
387 TIGR01425 SRP54_euk signal rec 95.5 0.083 1.8E-06 57.4 10.4 25 198-222 99-123 (429)
388 TIGR02655 circ_KaiC circadian 95.5 0.047 1E-06 61.5 9.0 67 185-256 249-315 (484)
389 PRK09519 recA DNA recombinatio 95.5 0.032 7E-07 64.8 7.7 99 187-292 47-148 (790)
390 PRK14721 flhF flagellar biosyn 95.5 0.11 2.4E-06 56.4 11.3 24 198-221 190-213 (420)
391 COG1419 FlhF Flagellar GTP-bin 95.5 0.17 3.6E-06 53.7 12.2 103 198-307 202-310 (407)
392 COG0572 Udk Uridine kinase [Nu 95.5 0.022 4.8E-07 55.1 5.3 79 198-283 7-85 (218)
393 PF00158 Sigma54_activat: Sigm 95.5 0.033 7.2E-07 52.6 6.5 45 178-222 1-45 (168)
394 PRK05201 hslU ATP-dependent pr 95.5 0.022 4.7E-07 60.9 5.7 78 175-254 14-107 (443)
395 cd03215 ABC_Carb_Monos_II This 95.5 0.059 1.3E-06 52.0 8.4 23 199-221 26-48 (182)
396 PRK10923 glnG nitrogen regulat 95.5 0.33 7.3E-06 54.9 15.9 47 176-222 138-184 (469)
397 COG1120 FepC ABC-type cobalami 95.5 0.075 1.6E-06 53.3 9.2 57 271-328 145-207 (258)
398 PRK11823 DNA repair protein Ra 95.5 0.027 5.9E-07 62.4 6.8 53 186-240 67-119 (446)
399 cd02027 APSK Adenosine 5'-phos 95.5 0.097 2.1E-06 48.5 9.4 21 201-221 1-21 (149)
400 PRK13540 cytochrome c biogenes 95.4 0.12 2.6E-06 50.8 10.5 24 199-222 27-50 (200)
401 cd01125 repA Hexameric Replica 95.4 0.083 1.8E-06 53.6 9.7 21 201-221 3-23 (239)
402 cd03263 ABC_subfamily_A The AB 95.4 0.1 2.2E-06 52.2 10.1 23 199-221 28-50 (220)
403 PRK05439 pantothenate kinase; 95.4 0.056 1.2E-06 56.2 8.2 93 185-283 70-166 (311)
404 COG0396 sufC Cysteine desulfur 95.4 0.13 2.8E-06 49.7 9.9 58 270-329 150-213 (251)
405 cd02019 NK Nucleoside/nucleoti 95.4 0.01 2.2E-07 46.6 2.1 22 201-222 1-22 (69)
406 KOG3347 Predicted nucleotide k 95.4 0.016 3.5E-07 51.4 3.5 35 199-240 7-41 (176)
407 COG0467 RAD55 RecA-superfamily 95.3 0.02 4.4E-07 58.9 4.9 53 194-250 18-70 (260)
408 PRK10416 signal recognition pa 95.3 0.059 1.3E-06 56.7 8.3 25 198-222 113-137 (318)
409 PRK05917 DNA polymerase III su 95.3 0.38 8.3E-06 49.4 13.8 135 186-338 7-154 (290)
410 PRK08927 fliI flagellum-specif 95.3 0.084 1.8E-06 57.4 9.6 93 198-294 157-260 (442)
411 PRK06547 hypothetical protein; 95.3 0.021 4.5E-07 54.2 4.4 26 197-222 13-38 (172)
412 TIGR03522 GldA_ABC_ATP gliding 95.3 0.15 3.3E-06 53.6 11.4 24 198-221 27-50 (301)
413 cd02021 GntK Gluconate kinase 95.3 0.18 3.9E-06 46.9 10.7 22 201-222 1-22 (150)
414 cd03235 ABC_Metallic_Cations A 95.3 0.17 3.7E-06 50.3 11.2 24 199-222 25-48 (213)
415 KOG2123 Uncharacterized conser 95.2 0.00096 2.1E-08 65.3 -4.8 59 654-712 39-97 (388)
416 cd03245 ABCC_bacteriocin_expor 95.2 0.17 3.7E-06 50.6 11.1 24 198-221 29-52 (220)
417 PRK08233 hypothetical protein; 95.2 0.014 3.1E-07 56.4 3.1 24 199-222 3-26 (182)
418 COG1643 HrpA HrpA-like helicas 95.2 0.07 1.5E-06 62.7 9.1 134 183-322 53-207 (845)
419 cd03244 ABCC_MRP_domain2 Domai 95.2 0.11 2.4E-06 52.0 9.5 23 199-221 30-52 (221)
420 cd01130 VirB11-like_ATPase Typ 95.2 0.018 4E-07 55.8 3.7 95 199-301 25-119 (186)
421 PF12775 AAA_7: P-loop contain 95.2 0.03 6.5E-07 57.5 5.5 33 187-222 24-56 (272)
422 PF06414 Zeta_toxin: Zeta toxi 95.2 0.048 1E-06 53.5 6.7 106 197-308 13-119 (199)
423 cd03282 ABC_MSH4_euk MutS4 hom 95.2 0.04 8.6E-07 54.0 6.0 120 199-327 29-158 (204)
424 TIGR01420 pilT_fam pilus retra 95.1 0.062 1.3E-06 57.6 7.9 108 199-319 122-229 (343)
425 PRK13538 cytochrome c biogenes 95.1 0.16 3.4E-06 50.1 10.3 24 199-222 27-50 (204)
426 COG1116 TauB ABC-type nitrate/ 95.1 0.14 2.9E-06 50.5 9.4 23 199-221 29-51 (248)
427 PRK00409 recombination and DNA 95.1 0.13 2.8E-06 61.3 11.2 179 198-403 326-527 (782)
428 KOG1947 Leucine rich repeat pr 95.1 0.0018 4E-08 73.8 -4.0 215 584-838 208-441 (482)
429 KOG1051 Chaperone HSP104 and r 95.1 0.094 2E-06 61.5 9.7 114 176-304 562-684 (898)
430 PRK09544 znuC high-affinity zi 95.1 0.18 3.9E-06 51.5 10.9 24 199-222 30-53 (251)
431 PRK06762 hypothetical protein; 95.1 0.015 3.3E-07 55.2 2.9 23 199-221 2-24 (166)
432 TIGR03740 galliderm_ABC gallid 95.1 0.24 5.3E-06 49.6 11.7 23 199-221 26-48 (223)
433 PRK09302 circadian clock prote 95.1 0.1 2.2E-06 59.5 10.1 126 185-317 17-174 (509)
434 cd03264 ABC_drug_resistance_li 95.1 0.17 3.6E-06 50.3 10.4 21 201-221 27-47 (211)
435 PRK11248 tauB taurine transpor 95.1 0.22 4.7E-06 51.0 11.5 24 199-222 27-50 (255)
436 cd03253 ABCC_ATM1_transporter 95.1 0.2 4.3E-06 50.7 11.2 23 199-221 27-49 (236)
437 cd01136 ATPase_flagellum-secre 95.1 0.14 3.1E-06 53.6 10.1 92 199-294 69-171 (326)
438 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.1 0.16 3.4E-06 51.0 10.2 24 199-222 48-71 (224)
439 COG2019 AdkA Archaeal adenylat 95.0 0.08 1.7E-06 48.3 6.9 49 199-259 4-52 (189)
440 cd03237 ABC_RNaseL_inhibitor_d 95.0 0.21 4.4E-06 50.8 11.0 24 199-222 25-48 (246)
441 cd02025 PanK Pantothenate kina 95.0 0.066 1.4E-06 53.2 7.3 41 201-243 1-43 (220)
442 cd03217 ABC_FeS_Assembly ABC-t 95.0 0.11 2.5E-06 50.9 8.9 24 199-222 26-49 (200)
443 PRK12727 flagellar biosynthesi 95.0 0.06 1.3E-06 59.4 7.4 89 198-292 349-438 (559)
444 PRK07276 DNA polymerase III su 95.0 0.76 1.7E-05 47.4 15.0 69 280-349 102-173 (290)
445 PRK13765 ATP-dependent proteas 95.0 0.031 6.8E-07 64.1 5.4 77 175-257 30-106 (637)
446 TIGR03574 selen_PSTK L-seryl-t 95.0 0.12 2.5E-06 52.9 9.2 21 201-221 1-21 (249)
447 cd03285 ABC_MSH2_euk MutS2 hom 95.0 0.011 2.3E-07 59.0 1.4 24 198-221 29-52 (222)
448 cd03278 ABC_SMC_barmotin Barmo 95.0 0.35 7.7E-06 47.2 12.1 20 201-220 24-43 (197)
449 TIGR00235 udk uridine kinase. 95.0 0.019 4.1E-07 56.8 3.3 25 197-221 4-28 (207)
450 cd03226 ABC_cobalt_CbiO_domain 95.0 0.22 4.7E-06 49.2 10.8 23 199-221 26-48 (205)
451 PRK06995 flhF flagellar biosyn 95.0 0.18 3.8E-06 55.8 10.9 58 199-256 256-314 (484)
452 COG0714 MoxR-like ATPases [Gen 95.0 0.043 9.3E-07 58.6 6.1 65 176-249 24-88 (329)
453 TIGR03575 selen_PSTK_euk L-ser 95.0 0.065 1.4E-06 56.5 7.2 21 202-222 2-22 (340)
454 TIGR03498 FliI_clade3 flagella 95.0 0.097 2.1E-06 56.9 8.8 94 198-294 139-242 (418)
455 PRK05480 uridine/cytidine kina 94.9 0.019 4.2E-07 56.9 3.2 25 198-222 5-29 (209)
456 cd03231 ABC_CcmA_heme_exporter 94.9 0.18 3.9E-06 49.5 10.1 24 198-221 25-48 (201)
457 COG2842 Uncharacterized ATPase 94.9 0.2 4.4E-06 50.5 10.2 119 175-306 71-191 (297)
458 PRK08972 fliI flagellum-specif 94.9 0.099 2.1E-06 56.6 8.7 93 198-294 161-264 (444)
459 KOG0652 26S proteasome regulat 94.9 0.5 1.1E-05 46.2 12.4 46 176-221 171-227 (424)
460 COG0541 Ffh Signal recognition 94.9 0.27 5.9E-06 52.3 11.5 60 198-259 99-159 (451)
461 PRK14723 flhF flagellar biosyn 94.9 0.15 3.2E-06 59.4 10.5 88 199-292 185-273 (767)
462 PF00910 RNA_helicase: RNA hel 94.9 0.014 3E-07 50.6 1.8 21 202-222 1-21 (107)
463 cd01135 V_A-ATPase_B V/A-type 94.9 0.16 3.4E-06 51.5 9.4 97 198-294 68-178 (276)
464 PTZ00301 uridine kinase; Provi 94.9 0.019 4.2E-07 56.3 3.0 23 199-221 3-25 (210)
465 KOG0726 26S proteasome regulat 94.9 0.3 6.5E-06 48.6 10.9 45 177-221 186-241 (440)
466 cd03281 ABC_MSH5_euk MutS5 hom 94.9 0.031 6.8E-07 55.3 4.4 23 199-221 29-51 (213)
467 PTZ00088 adenylate kinase 1; P 94.8 0.033 7.2E-07 55.5 4.6 21 201-221 8-28 (229)
468 PF13306 LRR_5: Leucine rich r 94.8 0.044 9.5E-07 49.4 5.1 85 697-784 6-90 (129)
469 cd03254 ABCC_Glucan_exporter_l 94.8 0.25 5.3E-06 49.8 11.0 24 199-222 29-52 (229)
470 PRK05922 type III secretion sy 94.8 0.15 3.3E-06 55.4 9.7 93 198-294 156-259 (434)
471 PRK11247 ssuB aliphatic sulfon 94.8 0.39 8.5E-06 49.1 12.3 23 199-221 38-60 (257)
472 PRK08149 ATP synthase SpaL; Va 94.8 0.14 3.1E-06 55.6 9.4 93 198-294 150-253 (428)
473 PRK06217 hypothetical protein; 94.7 0.042 9.2E-07 53.1 4.9 22 201-222 3-24 (183)
474 PRK06793 fliI flagellum-specif 94.7 0.34 7.3E-06 52.8 12.2 123 198-325 155-291 (432)
475 PRK09435 membrane ATPase/prote 94.7 0.11 2.4E-06 54.7 8.3 37 186-222 43-79 (332)
476 PRK10463 hydrogenase nickel in 94.7 0.12 2.6E-06 52.9 8.3 90 198-293 103-195 (290)
477 KOG0924 mRNA splicing factor A 94.7 0.09 2E-06 58.2 7.7 126 187-321 363-511 (1042)
478 COG2401 ABC-type ATPase fused 94.7 0.043 9.2E-07 57.3 4.9 152 178-329 373-577 (593)
479 PF08298 AAA_PrkA: PrkA AAA do 94.7 0.031 6.7E-07 58.1 4.0 46 176-221 61-110 (358)
480 PRK13543 cytochrome c biogenes 94.7 0.37 7.9E-06 47.9 11.6 25 198-222 36-60 (214)
481 PRK09099 type III secretion sy 94.7 0.15 3.2E-06 55.8 9.2 94 198-294 162-265 (441)
482 TIGR03771 anch_rpt_ABC anchore 94.7 0.3 6.5E-06 48.9 11.0 24 199-222 6-29 (223)
483 COG4133 CcmA ABC-type transpor 94.6 0.28 6.1E-06 45.9 9.6 23 199-221 28-50 (209)
484 cd02028 UMPK_like Uridine mono 94.6 0.042 9.2E-07 52.7 4.6 21 201-221 1-21 (179)
485 PRK12597 F0F1 ATP synthase sub 94.6 0.1 2.3E-06 57.2 8.0 95 198-293 142-248 (461)
486 COG4618 ArpD ABC-type protease 94.6 0.12 2.6E-06 55.8 8.1 23 199-221 362-384 (580)
487 PRK03839 putative kinase; Prov 94.6 0.022 4.8E-07 54.9 2.5 21 201-221 2-22 (180)
488 TIGR01818 ntrC nitrogen regula 94.6 0.47 1E-05 53.7 13.7 46 176-221 134-179 (463)
489 TIGR03411 urea_trans_UrtD urea 94.5 0.38 8.3E-06 48.9 11.6 23 199-221 28-50 (242)
490 cd03236 ABC_RNaseL_inhibitor_d 94.5 0.31 6.7E-06 49.8 10.8 24 198-221 25-48 (255)
491 COG0488 Uup ATPase components 94.5 0.19 4.2E-06 56.5 10.0 129 202-337 351-511 (530)
492 COG0563 Adk Adenylate kinase a 94.5 0.046 1E-06 52.1 4.4 22 201-222 2-23 (178)
493 TIGR00554 panK_bact pantothena 94.5 0.18 4E-06 52.0 9.0 80 197-282 60-141 (290)
494 COG1428 Deoxynucleoside kinase 94.5 0.026 5.7E-07 53.8 2.6 24 199-222 4-27 (216)
495 PRK00131 aroK shikimate kinase 94.5 0.026 5.6E-07 54.1 2.8 24 198-221 3-26 (175)
496 KOG1532 GTPase XAB1, interacts 94.5 0.17 3.6E-06 50.0 8.0 26 197-222 17-42 (366)
497 TIGR00764 lon_rel lon-related 94.5 0.075 1.6E-06 61.3 6.8 76 175-257 17-93 (608)
498 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.4 0.4 8.6E-06 48.6 11.5 24 199-222 29-52 (238)
499 PRK00279 adk adenylate kinase; 94.4 0.15 3.2E-06 50.8 8.2 21 201-221 2-22 (215)
500 TIGR01360 aden_kin_iso1 adenyl 94.4 0.029 6.4E-07 54.5 3.1 24 198-221 2-25 (188)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8e-82 Score=727.63 Aligned_cols=803 Identities=31% Similarity=0.470 Sum_probs=624.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHhhhhhHHHHhhhhc
Q 037627 2 VDAVVSFVVQRLGDYLIQEAAFLGEVRTEVRSLKKELEWMLCFIKDAEDKQVDDPMIRQWVSDIRDVAHDIEDVLYNFTL 81 (858)
Q Consensus 2 a~~~~~~~~~kl~~~l~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~~~~~~~~~~~~~~wl~~~~~~~~d~ed~ld~~~~ 81 (858)
|++.++..++|+.+++.+++..+.++++.+..|++.|..++++++|++.++.+...+..|.+.+++++|++||+++.|..
T Consensus 1 ~~~~~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v 80 (889)
T KOG4658|consen 1 MGACVSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLV 80 (889)
T ss_pred CCeEEEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccccccccccccCCCCccc-c--cceehccccCCcchhhHhHHHHHHHHHHHHHHHHHHhhhhcccccCCCcCccCCCcc
Q 037627 82 KVDDSAEIDDRKRKPSFLG-K--MKICLCVFNKGKEKIDLYNIGKEIEELRKRVSDISRRRESYHLESTDNYNLEAKGHD 158 (858)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (858)
+...... .+..+ . .....|+ . ..+++.+..+..+.+++.++.+....+.....-. ..+..
T Consensus 81 ~~~~~~~-------~~~l~~~~~~~~~~c~---~---~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~----~~~~~ 143 (889)
T KOG4658|consen 81 EEIERKA-------NDLLSTRSVERQRLCL---C---GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFE----VVGES 143 (889)
T ss_pred HHHHHHH-------hHHhhhhHHHHHHHhh---h---hhHhHhhhhhHhHHHHHHHHHHHHHHhcccccee----ccccc
Confidence 6654211 01110 0 0111111 1 5667888888889999999998888887654110 11100
Q ss_pred chhhhhhhccccCCCcCCceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCcc-ccCCcceEEEEEe
Q 037627 159 VSRRVRELRRATSFSIEGNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNND-VKNKFDRCAWVSV 237 (858)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~-~~~~f~~~~wv~~ 237 (858)
. .....++..+...... ||.+..++++.+.|...+. .+++|+||||+||||||++++++.. ++.+|+.++||.|
T Consensus 144 ~--~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~V 218 (889)
T KOG4658|consen 144 L--DPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVV 218 (889)
T ss_pred c--cchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEE
Confidence 0 0122234455555555 9999999999999988764 8999999999999999999999977 9999999999999
Q ss_pred CCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChhhHHHHHhhCCCCCCCcEEEEEe
Q 037627 238 SQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKETWESLKRAFPDNKNGSRVIITT 317 (858)
Q Consensus 238 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~l~~~l~~~~~gs~ilvTt 317 (858)
++.++...++.+|+..++.... .......+++...+.+.|+++||+||+||+|+..+|+.+..++|...+|++|++||
T Consensus 219 Sk~f~~~~iq~~Il~~l~~~~~--~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTT 296 (889)
T KOG4658|consen 219 SKEFTTRKIQQTILERLGLLDE--EWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTT 296 (889)
T ss_pred cccccHHhHHHHHHHHhccCCc--ccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEe
Confidence 9999999999999999887543 12222347888999999999999999999999999999999999988899999999
Q ss_pred CchhHHhhcCCCCceeecCCCChhHHHHHHHHHhcCCCCC-ChhHHHHHHHHHHHcCCChHHHHHHHhHhcCC-ChHHHH
Q 037627 318 RIKEVAERSDENAYAHKLRFLRSDESWELFCEKAFRKSNG-SEGLEKLGREMVEKCRGLPLAIVVLGGLLSMK-KPQEWR 395 (858)
Q Consensus 318 R~~~~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~-~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~-~~~~w~ 395 (858)
|+..|+.........++++.|+.+|||+||.+.++..... .+.++++|++|+++|+|+|||+.++|+.|+.+ ...+|+
T Consensus 297 Rs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~ 376 (889)
T KOG4658|consen 297 RSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWR 376 (889)
T ss_pred ccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHH
Confidence 9999999844445889999999999999999999887544 56689999999999999999999999999999 788999
Q ss_pred HHHHHHHhhhhcC----ccchhhHHHhhhccCcHHHHHHHhHhcCCCCCceeCHHHHHHHHHHcCcccc-CCCCCHHHHH
Q 037627 396 RVRDHLWQHLKND----CIHISSLLNLSFRNLSHELKLCFLYLGLFPEDFEINVQTLIRLLVAEGFIQQ-DTDRSTEEVA 470 (858)
Q Consensus 396 ~~~~~l~~~~~~~----~~~i~~~l~~s~~~L~~~~k~~f~~la~fp~~~~i~~~~l~~~w~aeg~i~~-~~~~~~~~~~ 470 (858)
++.+.+.+..... ...+..++.+||+.||++.|.||+|||+||+|+.|+.+.|+.+|+||||+.+ ..+...++++
T Consensus 377 ~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G 456 (889)
T KOG4658|consen 377 RALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVG 456 (889)
T ss_pred HHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcch
Confidence 9999987763322 2678999999999999999999999999999999999999999999999988 4467889999
Q ss_pred HHHHHHHHhcccccccccCCCcEeEEEEcHhHHHHHHHHhc-----ccCcEeeeCC-----CCCccCCCeeEEEEEeccc
Q 037627 471 GEILDELINRSLIQIDKRCWGRIATCRVHDLLRDLAIEQAK-----KIKFIHICKD-----APNLISSSCRRQAVHFRIM 540 (858)
Q Consensus 471 ~~~l~~L~~~~ll~~~~~~~~~~~~~~~H~lir~~~~~~~~-----~~~~~~~~~~-----~~~~~~~~~r~l~~~~~~~ 540 (858)
.+|+.+|++++|+...... ++...|.|||+|||+|..+++ +++.+...+. +........||++++++..
T Consensus 457 ~~~i~~LV~~~Ll~~~~~~-~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~ 535 (889)
T KOG4658|consen 457 YDYIEELVRASLLIEERDE-GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKI 535 (889)
T ss_pred HHHHHHHHHHHHHhhcccc-cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccch
Confidence 9999999999999877633 567889999999999999999 6765433321 1122345789999998777
Q ss_pred CCCCCCCCCCCCccccccCC------------------eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcc
Q 037627 541 GDWGLGHCNPRSSSLLLFNQ------------------RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHI 602 (858)
Q Consensus 541 ~~~~~~~~~~~lr~l~~~~~------------------r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i 602 (858)
...+.....+++++|.+... |||||++|.. +. ++|..+++|.+||||+|+++.+
T Consensus 536 ~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~------l~--~LP~~I~~Li~LryL~L~~t~I 607 (889)
T KOG4658|consen 536 EHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS------LS--KLPSSIGELVHLRYLDLSDTGI 607 (889)
T ss_pred hhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc------cC--cCChHHhhhhhhhcccccCCCc
Confidence 77766666778888877652 8999998763 55 8999999999999999999999
Q ss_pred cccCcccccCCCCcEEeccccccccccchhhhcccccccccccccc----cc---CCCCCccccccceeecccccccCcc
Q 037627 603 DVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGNFTG----TL---NIENLSNLQTLKYVERGSWAEINPE 675 (858)
Q Consensus 603 ~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~~~----~~---~~~~l~~L~~L~l~~~~~~~~~~~~ 675 (858)
+.+|.++.+|.+|.+||+..+.....+|.....|++|++|...... .. .+.++.+|+.+............+.
T Consensus 608 ~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~ 687 (889)
T KOG4658|consen 608 SHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLL 687 (889)
T ss_pred cccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhh
Confidence 9999999999999999999987666777777779999999432221 11 3344445555444332221123334
Q ss_pred cccCCC----eeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCC------CCCccEEEecc-cCCCCCh
Q 037627 676 KLVNLR----DLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSD------CSYLIDLRLSG-KIEKLPE 744 (858)
Q Consensus 676 ~l~~L~----~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~------l~~L~~L~l~~-~~~~~p~ 744 (858)
.+..|. .+.+..+ ...... .++..+.+|+.|.+..++..... ...... ++++..+.+.+ .....+.
T Consensus 688 ~~~~L~~~~~~l~~~~~-~~~~~~-~~~~~l~~L~~L~i~~~~~~e~~-~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~ 764 (889)
T KOG4658|consen 688 GMTRLRSLLQSLSIEGC-SKRTLI-SSLGSLGNLEELSILDCGISEIV-IEWEESLIVLLCFPNLSKVSILNCHMLRDLT 764 (889)
T ss_pred hhHHHHHHhHhhhhccc-ccceee-cccccccCcceEEEEcCCCchhh-cccccccchhhhHHHHHHHHhhccccccccc
Confidence 444444 2222222 222233 67788999999999988664321 111111 22333333333 2333455
Q ss_pred hhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECCCCccccceeeecCCCCCCeEEEcc----
Q 037627 745 DLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLNDLAQWQVED---- 820 (858)
Q Consensus 745 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~---- 820 (858)
|..- .++|+.|.+..|.....+++....+..+..+.+..+.+.+.......+.|+++..+.+.. ..+..+....
T Consensus 765 ~~~f-~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~-~~l~~~~ve~~p~l 842 (889)
T KOG4658|consen 765 WLLF-APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSF-LKLEELIVEECPKL 842 (889)
T ss_pred hhhc-cCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCc-cchhheehhcCccc
Confidence 5544 699999999999988888888888888888888888888765566777888888887776 3366666655
Q ss_pred Cccccccceeeccc-ccCC-CCcc
Q 037627 821 GAMPILRGLRVTNA-YKLK-IPER 842 (858)
Q Consensus 821 ~~l~~L~~L~l~~c-~~L~-lp~~ 842 (858)
+.+|.+..+.+.+| +.+. +|.+
T Consensus 843 ~~~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 843 GKLPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred ccCccccccceeccccceeecCCc
Confidence 67888888888886 6666 7775
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.1e-58 Score=565.00 Aligned_cols=622 Identities=20% Similarity=0.261 Sum_probs=393.5
Q ss_pred cCCCcCCceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEe---CCC------
Q 037627 170 TSFSIEGNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSV---SQD------ 240 (858)
Q Consensus 170 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~---~~~------ 240 (858)
++..+.+.+|||+.+++++..+|.-.....++|+|+||||+||||||+++|+ ++..+|++.+|+.. ...
T Consensus 178 ~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~ 255 (1153)
T PLN03210 178 TPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSS 255 (1153)
T ss_pred ccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhccc
Confidence 3444567899999999999998876666789999999999999999999998 77888988888742 111
Q ss_pred -----CC-HHHHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChhhHHHHHhhCCCCCCCcEEE
Q 037627 241 -----YD-TKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKETWESLKRAFPDNKNGSRVI 314 (858)
Q Consensus 241 -----~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~l~~~l~~~~~gs~il 314 (858)
+. ...+..+++..+..... ..... ...+++.++++|+||||||||+.++|+.+.....+.++|++||
T Consensus 256 ~~~~~~~~~~~l~~~~l~~il~~~~---~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrII 328 (1153)
T PLN03210 256 ANPDDYNMKLHLQRAFLSEILDKKD---IKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRII 328 (1153)
T ss_pred ccccccchhHHHHHHHHHHHhCCCC---cccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEE
Confidence 00 11233334433322211 00001 1346777899999999999999999999988777778899999
Q ss_pred EEeCchhHHhhcCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhHhcCCChHHH
Q 037627 315 ITTRIKEVAERSDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVLGGLLSMKKPQEW 394 (858)
Q Consensus 315 vTtR~~~~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~~~~~w 394 (858)
||||+..++...... .+++++.+++++|++||+.+||....+++.+.+++++|+++|+|+|||++++|++|++++..+|
T Consensus 329 iTTrd~~vl~~~~~~-~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W 407 (1153)
T PLN03210 329 VITKDKHFLRAHGID-HIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDW 407 (1153)
T ss_pred EEeCcHHHHHhcCCC-eEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHH
Confidence 999999998765544 7899999999999999999999876666778899999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcCccchhhHHHhhhccCcH-HHHHHHhHhcCCCCCceeCHHHHHHHHHHcCccccCCCCCHHHHHHHH
Q 037627 395 RRVRDHLWQHLKNDCIHISSLLNLSFRNLSH-ELKLCFLYLGLFPEDFEINVQTLIRLLVAEGFIQQDTDRSTEEVAGEI 473 (858)
Q Consensus 395 ~~~~~~l~~~~~~~~~~i~~~l~~s~~~L~~-~~k~~f~~la~fp~~~~i~~~~l~~~w~aeg~i~~~~~~~~~~~~~~~ 473 (858)
..+++.+.+... ..+..+|++||+.|++ ..|.||+++|+|+.+..++ .+..|.+.+.+. ++..
T Consensus 408 ~~~l~~L~~~~~---~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~----------~~~~ 471 (1153)
T PLN03210 408 MDMLPRLRNGLD---GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD----------VNIG 471 (1153)
T ss_pred HHHHHHHHhCcc---HHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC----------chhC
Confidence 999999876433 4699999999999986 5999999999999886543 355666655432 2334
Q ss_pred HHHHHhcccccccccCCCcEeEEEEcHhHHHHHHHHhcccC-------cEeeeCC-----CCCccCCCeeEEEEEecccC
Q 037627 474 LDELINRSLIQIDKRCWGRIATCRVHDLLRDLAIEQAKKIK-------FIHICKD-----APNLISSSCRRQAVHFRIMG 541 (858)
Q Consensus 474 l~~L~~~~ll~~~~~~~~~~~~~~~H~lir~~~~~~~~~~~-------~~~~~~~-----~~~~~~~~~r~l~~~~~~~~ 541 (858)
++.|++++||+... ..+.||+++|+++++++.++. +.....+ ........++.+++......
T Consensus 472 l~~L~~ksLi~~~~------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~ 545 (1153)
T PLN03210 472 LKNLVDKSLIHVRE------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEID 545 (1153)
T ss_pred hHHHHhcCCEEEcC------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccc
Confidence 89999999998654 358999999999999986542 1110000 00111234444444322221
Q ss_pred CCCC----CCCCCCCcccccc-----------------------CCeeeeccCCccccccccCCCCCccccccCCcccce
Q 037627 542 DWGL----GHCNPRSSSLLLF-----------------------NQRVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKY 594 (858)
Q Consensus 542 ~~~~----~~~~~~lr~l~~~-----------------------~~r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~ 594 (858)
.... ...+++++.|.+. ..|.|++.++. +. .+|..| .+.+|+.
T Consensus 546 ~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-------l~--~lP~~f-~~~~L~~ 615 (1153)
T PLN03210 546 ELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-------LR--CMPSNF-RPENLVK 615 (1153)
T ss_pred eeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-------CC--CCCCcC-CccCCcE
Confidence 1100 0122333333221 12666666665 44 566555 3456666
Q ss_pred EeccCCcccccCcccccCCCCcEEeccccccccccchhhhccccccccccc-----cccccCCCCCccccccceeecccc
Q 037627 595 LRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGN-----FTGTLNIENLSNLQTLKYVERGSW 669 (858)
Q Consensus 595 L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~-----~~~~~~~~~l~~L~~L~l~~~~~~ 669 (858)
|++++|.+..+|.++..+++|+.|+|++|..++.+|. ++.+++|+.|... ...+..++++++|+.|++++|+..
T Consensus 616 L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L 694 (1153)
T PLN03210 616 LQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL 694 (1153)
T ss_pred EECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc
Confidence 6666666666666666666666666666544555553 5556666666211 122334555666666666655422
Q ss_pred cc-cCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCC--------------------------
Q 037627 670 AE-INPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQ-------------------------- 722 (858)
Q Consensus 670 ~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-------------------------- 722 (858)
.. +....+++|+.|.+.+|.....++ . ..++|+.|++++|.+..++...
T Consensus 695 ~~Lp~~i~l~sL~~L~Lsgc~~L~~~p-~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~ 770 (1153)
T PLN03210 695 EILPTGINLKSLYRLNLSGCSRLKSFP-D---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLT 770 (1153)
T ss_pred CccCCcCCCCCCCEEeCCCCCCccccc-c---ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccc
Confidence 21 111245555666665554333332 1 1234455555544332221100
Q ss_pred --CCCCCCCccEEEeccc--CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECCCC
Q 037627 723 --PLSDCSYLIDLRLSGK--IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKG 798 (858)
Q Consensus 723 --~l~~l~~L~~L~l~~~--~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~ 798 (858)
....+++|+.|++++| +..+|.++.. +++|+.|+|++|.....+|..+ ++++|+.|+|++|..-.. .+..
T Consensus 771 ~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~-L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~----~p~~ 844 (1153)
T PLN03210 771 PLMTMLSPSLTRLFLSDIPSLVELPSSIQN-LHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRT----FPDI 844 (1153)
T ss_pred hhhhhccccchheeCCCCCCccccChhhhC-CCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccc----cccc
Confidence 0112345666666664 4456666555 5667777776664333444333 556666666665432110 1112
Q ss_pred ccccceeeecCCCCCCeEEEccCccccccceeecccccCC-CCcccCC
Q 037627 799 FHLLEILQLIDLNDLAQWQVEDGAMPILRGLRVTNAYKLK-IPERLKS 845 (858)
Q Consensus 799 ~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~L~-lp~~l~~ 845 (858)
.++|+.|++.+ +.++.+|.....+++|+.|++++|++++ +|..+..
T Consensus 845 ~~nL~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~ 891 (1153)
T PLN03210 845 STNISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISK 891 (1153)
T ss_pred ccccCEeECCC-CCCccChHHHhcCCCCCEEECCCCCCcCccCccccc
Confidence 33455555554 3344555555566667777777766666 6554333
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=5.8e-42 Score=361.02 Aligned_cols=279 Identities=37% Similarity=0.605 Sum_probs=228.9
Q ss_pred ccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccc
Q 037627 181 FDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLT 260 (858)
Q Consensus 181 r~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 260 (858)
||.++++|.+.|.....+.++|+|+|+||+||||||.+++++...+.+|+.++|++++...+...++..|+..++.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999998667899999999999999999999999656899999999999999999999999999999877431
Q ss_pred hhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChhhHHHHHhhCCCCCCCcEEEEEeCchhHHhhcCCCCceeecCCCCh
Q 037627 261 RELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKETWESLKRAFPDNKNGSRVIITTRIKEVAERSDENAYAHKLRFLRS 340 (858)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~~~~~~~~~~~~~~l~~L~~ 340 (858)
. ....+.+.....+.+.+.++++||||||+|+...|+.+...++....|++||||||+..++.........+++++|+.
T Consensus 81 ~-~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 I-SDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp S-SCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred c-ccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1 133456778899999999999999999999999999998888877789999999999988876654347899999999
Q ss_pred hHHHHHHHHHhcCCC-CCChhHHHHHHHHHHHcCCChHHHHHHHhHhcCC-ChHHHHHHHHHHHhhhhc---CccchhhH
Q 037627 341 DESWELFCEKAFRKS-NGSEGLEKLGREMVEKCRGLPLAIVVLGGLLSMK-KPQEWRRVRDHLWQHLKN---DCIHISSL 415 (858)
Q Consensus 341 ~e~~~l~~~~~~~~~-~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~-~~~~w~~~~~~l~~~~~~---~~~~i~~~ 415 (858)
+||++||.+.++... ...+..++.+++|+++|+|+||||.++|++++.+ +..+|..+++.+...... ....+..+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999998766 2345567889999999999999999999999766 788999999888776643 23789999
Q ss_pred HHhhhccCcHHHHHHHhHhcCCCCCceeCHHHHHHHHHHcCcccc
Q 037627 416 LNLSFRNLSHELKLCFLYLGLFPEDFEINVQTLIRLLVAEGFIQQ 460 (858)
Q Consensus 416 l~~s~~~L~~~~k~~f~~la~fp~~~~i~~~~l~~~w~aeg~i~~ 460 (858)
+.+||+.||+++|.||+|||+||+++.|+.+.++++|+++|+|..
T Consensus 240 l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 240 LELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 999999999999999999999999999999999999999999965
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=3.3e-25 Score=231.25 Aligned_cols=308 Identities=20% Similarity=0.190 Sum_probs=246.7
Q ss_pred CCeeEEEEEecccCCCCCC-CCCCCCccccccCCeeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccC
Q 037627 528 SSCRRQAVHFRIMGDWGLG-HCNPRSSSLLLFNQRVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIP 606 (858)
Q Consensus 528 ~~~r~l~~~~~~~~~~~~~-~~~~~lr~l~~~~~r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp 606 (858)
.+..|+++..+.+..+... ..++.| |.+++..|+ ++...+|..+.+|..|..||||+|+++..|
T Consensus 55 qkLEHLs~~HN~L~~vhGELs~Lp~L--------Rsv~~R~N~-------LKnsGiP~diF~l~dLt~lDLShNqL~EvP 119 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVHGELSDLPRL--------RSVIVRDNN-------LKNSGIPTDIFRLKDLTILDLSHNQLREVP 119 (1255)
T ss_pred hhhhhhhhhhhhhHhhhhhhccchhh--------HHHhhhccc-------cccCCCCchhcccccceeeecchhhhhhcc
Confidence 3556666654544433221 344445 444556666 655589999999999999999999999999
Q ss_pred cccccCCCCcEEeccccccccccchh-hhccccccccc---ccc-ccccCCCCCccccccceeeccc--ccccCcccccC
Q 037627 607 SCIAKLQRLQTLDISGNMAFMELPRE-ICELKELRHLI---GNF-TGTLNIENLSNLQTLKYVERGS--WAEINPEKLVN 679 (858)
Q Consensus 607 ~~l~~l~~L~~L~L~~n~~~~~lp~~-~~~l~~L~~L~---~~~-~~~~~~~~l~~L~~L~l~~~~~--~~~~~~~~l~~ 679 (858)
..+.+.+++-+|+||+| .+..+|.. |.+|+.|-+|+ |.+ ..|+.+..+.+|++|.+++|.. .....+..++.
T Consensus 120 ~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmts 198 (1255)
T KOG0444|consen 120 TNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTS 198 (1255)
T ss_pred hhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchh
Confidence 99999999999999999 77778865 55788888883 333 4566888999999999999984 33444556777
Q ss_pred CCeeEEeeccc-ccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEE
Q 037627 680 LRDLRIISKYQ-EEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLS 757 (858)
Q Consensus 680 L~~L~l~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~ 757 (858)
|..|.+++... ...+| .++..+.+|..++++.|+.... ++.+..+++|+.|+||+| ++.+......+ .+|++|+
T Consensus 199 L~vLhms~TqRTl~N~P-tsld~l~NL~dvDlS~N~Lp~v--Pecly~l~~LrrLNLS~N~iteL~~~~~~W-~~lEtLN 274 (1255)
T KOG0444|consen 199 LSVLHMSNTQRTLDNIP-TSLDDLHNLRDVDLSENNLPIV--PECLYKLRNLRRLNLSGNKITELNMTEGEW-ENLETLN 274 (1255)
T ss_pred hhhhhcccccchhhcCC-CchhhhhhhhhccccccCCCcc--hHHHhhhhhhheeccCcCceeeeeccHHHH-hhhhhhc
Confidence 77788877763 34456 8999999999999999877653 456778899999999997 77777777774 8999999
Q ss_pred EecccCCCCCccccCCCCCCCeeEeeccccCCceEEECCCCccccceeeecCCCCCCeEEEccCccccccceeecccccC
Q 037627 758 LKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLNDLAQWQVEDGAMPILRGLRVTNAYKL 837 (858)
Q Consensus 758 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~L 837 (858)
||.|+++ ..|..++.++.|+.|.+.+|.++-+.++...+.+.+|+.+...+ ++++-.|.....++.|+.|.+++|..+
T Consensus 275 lSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 275 LSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred cccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhccccccee
Confidence 9999986 77899999999999999999988777777778889999998886 678888888889999999999988655
Q ss_pred CCCcccCCCCCCceecCCCC
Q 037627 838 KIPERLKSIPLPTEWECDEN 857 (858)
Q Consensus 838 ~lp~~l~~L~~L~~~~c~~N 857 (858)
++|.++.-|+.|++++..+|
T Consensus 353 TLPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 353 TLPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred echhhhhhcCCcceeeccCC
Confidence 59999999999999988776
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=7.8e-23 Score=252.37 Aligned_cols=218 Identities=24% Similarity=0.299 Sum_probs=156.9
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCccc-ccCcccccCCCCcEEeccccccccccchhhhccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHID-VIPSCIAKLQRLQTLDISGNMAFMELPREICELKEL 639 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L 639 (858)
++|+|++|. +. +.+|..++++++|++|+|++|.+. .+|..++++++|++|++++|.+.+.+|..++++++|
T Consensus 143 ~~L~Ls~n~-------~~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 214 (968)
T PLN00113 143 ETLDLSNNM-------LS-GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214 (968)
T ss_pred CEEECcCCc-------cc-ccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence 677777776 43 157777888888888888888875 678888888888888888887777888888888888
Q ss_pred cccc---cccc--cccCCCCCccccccceeecccccc--cCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeec
Q 037627 640 RHLI---GNFT--GTLNIENLSNLQTLKYVERGSWAE--INPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRL 712 (858)
Q Consensus 640 ~~L~---~~~~--~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 712 (858)
++|+ +.+. .+..++++++|++|++++|..... ..+..+++|+.|++.+|......+ ..+..+++|+.|++++
T Consensus 215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~ 293 (968)
T PLN00113 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP-PSIFSLQKLISLDLSD 293 (968)
T ss_pred cEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc-hhHhhccCcCEEECcC
Confidence 8883 3332 344677888888888888775432 235577788888888877666666 6777888888888887
Q ss_pred cCCccccCCCCCCCCCCccEEEeccc-C-CCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCC
Q 037627 713 SDDTCFDSLQPLSDCSYLIDLRLSGK-I-EKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGG 789 (858)
Q Consensus 713 ~~~~~~~~~~~l~~l~~L~~L~l~~~-~-~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 789 (858)
|..... ....+..+++|+.|++++| + +.+|.++.. +++|+.|+|++|.+++..|..++.+++|+.|+|++|.+.+
T Consensus 294 n~l~~~-~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~ 370 (968)
T PLN00113 294 NSLSGE-IPELVIQLQNLEILHLFSNNFTGKIPVALTS-LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG 370 (968)
T ss_pred CeeccC-CChhHcCCCCCcEEECCCCccCCcCChhHhc-CCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe
Confidence 765432 2334566777788877775 2 345656655 5777777777777777777777777777777777776654
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=1.5e-22 Score=249.97 Aligned_cols=283 Identities=22% Similarity=0.260 Sum_probs=155.6
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCccc-ccCcccccCCCCcEEeccccccccccchhhhccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHID-VIPSCIAKLQRLQTLDISGNMAFMELPREICELKEL 639 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L 639 (858)
++|+|++|. +. +.+|..++++++|++|+|++|.+. .+|..+.++++|++|++++|.+.+.+|..++.+++|
T Consensus 167 ~~L~L~~n~-------l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 238 (968)
T PLN00113 167 KVLDLGGNV-------LV-GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238 (968)
T ss_pred CEEECccCc-------cc-ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCC
Confidence 777777776 32 156667777777777777777765 456677777777777777776666677777777777
Q ss_pred cccc---cccc--cccCCCCCccccccceeeccccccc--CcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeec
Q 037627 640 RHLI---GNFT--GTLNIENLSNLQTLKYVERGSWAEI--NPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRL 712 (858)
Q Consensus 640 ~~L~---~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 712 (858)
++|+ +.+. .+..++++++|+.|++++|...... .+..+++|+.|++++|.....++ ..+..+++|+.|++++
T Consensus 239 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~l~~ 317 (968)
T PLN00113 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFS 317 (968)
T ss_pred CEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCC-hhHcCCCCCcEEECCC
Confidence 7772 2222 2335666667777766666543221 23455666666666665554454 5555666666666665
Q ss_pred cCCccccCCCCCCCCCCccEEEeccc-C-CCCChhhhhccCCccEEEEecc------------------------cCCCC
Q 037627 713 SDDTCFDSLQPLSDCSYLIDLRLSGK-I-EKLPEDLHEVLPNLECLSLKKS------------------------HLKED 766 (858)
Q Consensus 713 ~~~~~~~~~~~l~~l~~L~~L~l~~~-~-~~~p~~~~~~l~~L~~L~L~~n------------------------~l~~~ 766 (858)
|..... ....+..+++|+.|++++| + +.+|.++.. +++|+.|+|++| .+.+.
T Consensus 318 n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~ 395 (968)
T PLN00113 318 NNFTGK-IPVALTSLPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE 395 (968)
T ss_pred CccCCc-CChhHhcCCCCCEEECcCCCCcCcCChHHhC-CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEeccc
Confidence 544322 2223444555555555543 2 234444443 344555555544 44444
Q ss_pred CccccCCCCCCCeeEeeccccCCceEEECCCCccccceeeecCCCCCCeEEEccCccccccceeecccccCC-CCcccCC
Q 037627 767 PMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLNDLAQWQVEDGAMPILRGLRVTNAYKLK-IPERLKS 845 (858)
Q Consensus 767 ~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~L~-lp~~l~~ 845 (858)
.|..++.+++|+.|+|++|.+++. .+.....+++|+.|+++++.-...++.....+++|+.|++++|.... +|..+.
T Consensus 396 ~p~~~~~~~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~- 473 (968)
T PLN00113 396 IPKSLGACRSLRRVRLQDNSFSGE-LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG- 473 (968)
T ss_pred CCHHHhCCCCCCEEECcCCEeeeE-CChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-
Confidence 445555555555555555555432 12222345566666666543222233333456677777777775444 555332
Q ss_pred CCCCceecCCC
Q 037627 846 IPLPTEWECDE 856 (858)
Q Consensus 846 L~~L~~~~c~~ 856 (858)
.+.|+.++++.
T Consensus 474 ~~~L~~L~ls~ 484 (968)
T PLN00113 474 SKRLENLDLSR 484 (968)
T ss_pred cccceEEECcC
Confidence 23444444443
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=2.2e-23 Score=216.69 Aligned_cols=273 Identities=22% Similarity=0.226 Sum_probs=222.1
Q ss_pred eeeeccCCccccccccCCCCCcc-ccccCCcccceEeccCCccccc-CcccccCCCCcEEeccccccccccc-hhhhccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLP-EEMVKLVNLKYLRLTNAHIDVI-PSCIAKLQRLQTLDISGNMAFMELP-REICELK 637 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~n~~~~~lp-~~~~~l~ 637 (858)
|+||||.|. +. ++| ++|..-.++++|+|++|.|+.+ ...|.++.+|.+|.|+.| .+..+| ..|.+|+
T Consensus 152 rslDLSrN~-------is--~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~ 221 (873)
T KOG4194|consen 152 RSLDLSRNL-------IS--EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLP 221 (873)
T ss_pred hhhhhhhch-------hh--cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcc
Confidence 899999998 76 776 3466668999999999999988 456889999999999999 555555 5677799
Q ss_pred ccccccccc---ccc--cCCCCCccccccceeeccccccc--CcccccCCCeeEEeecccccccchhhhhcCCCCCeEEe
Q 037627 638 ELRHLIGNF---TGT--LNIENLSNLQTLKYVERGSWAEI--NPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSI 710 (858)
Q Consensus 638 ~L~~L~~~~---~~~--~~~~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 710 (858)
+|+.|..+. ... ..|.++++|+.|.+..|++.... .+-.+.++++|++..|+....-. .++.+++.|+.|++
T Consensus 222 ~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~-g~lfgLt~L~~L~l 300 (873)
T KOG4194|consen 222 KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE-GWLFGLTSLEQLDL 300 (873)
T ss_pred hhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc-ccccccchhhhhcc
Confidence 999994332 222 26789999999999999855443 35578999999999998777766 88999999999999
Q ss_pred eccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCC
Q 037627 711 RLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGG 789 (858)
Q Consensus 711 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 789 (858)
+.|.+..+ .......+++|+.|+|+.| +..+++.-+..+..|+.|+|+.|.++...-..|.++++|+.|||++|.++.
T Consensus 301 S~NaI~ri-h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~ 379 (873)
T KOG4194|consen 301 SYNAIQRI-HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSW 379 (873)
T ss_pred chhhhhee-ecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEE
Confidence 99988887 6778888999999999996 888888877778999999999999987777889999999999999998763
Q ss_pred ce--EEECCCCccccceeeecCCCCCCeEEEc-cCccccccceeecccccCC-CCcccCCC
Q 037627 790 KK--MICTTKGFHLLEILQLIDLNDLAQWQVE-DGAMPILRGLRVTNAYKLK-IPERLKSI 846 (858)
Q Consensus 790 ~~--~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~L~-lp~~l~~L 846 (858)
.. -.....++++|+.|.+.+ ++++.++.. +..+++|+.|++.+|+... -|..|.++
T Consensus 380 ~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 380 CIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred EEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence 21 112235699999999998 678888654 5578999999999998655 56666554
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=9.8e-23 Score=211.86 Aligned_cols=283 Identities=19% Similarity=0.206 Sum_probs=199.9
Q ss_pred eeeeccCCccccccccCCCCCcc-ccccCCcccceEeccCCcccccCc-ccccCCCCcEEeccccccccccchhhhcccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLP-EEMVKLVNLKYLRLTNAHIDVIPS-CIAKLQRLQTLDISGNMAFMELPREICELKE 638 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~ 638 (858)
..|+|.+|. +. ++. ..+.-++.|+.|||+.|.|+.+|. ++..-.++++|+|++|.+...-...|..+.+
T Consensus 128 ~~L~L~~N~-------I~--sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lns 198 (873)
T KOG4194|consen 128 EKLDLRHNL-------IS--SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNS 198 (873)
T ss_pred eEEeeeccc-------cc--cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccch
Confidence 556666665 44 332 346667777777777777777753 3555567888888888444444455666766
Q ss_pred cccc---cccccc-c-cCCCCCccccccceeeccccc--ccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEee
Q 037627 639 LRHL---IGNFTG-T-LNIENLSNLQTLKYVERGSWA--EINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIR 711 (858)
Q Consensus 639 L~~L---~~~~~~-~-~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 711 (858)
|-.| .|.++. | ..|.+++.|+.|++..|.+.. ...+..+++|+.|.+..|.....-. ..|..+.+++.|+|.
T Consensus 199 L~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~D-G~Fy~l~kme~l~L~ 277 (873)
T KOG4194|consen 199 LLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDD-GAFYGLEKMEHLNLE 277 (873)
T ss_pred heeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccC-cceeeecccceeecc
Confidence 6666 233332 2 267778888888888877433 3346678888888888887666666 778888888999988
Q ss_pred ccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCc
Q 037627 712 LSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGK 790 (858)
Q Consensus 712 ~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~ 790 (858)
.|..... .-.++-++..|+.|++|.| +..+...-..++++|+.|+|++|.++...+.+|..|..|+.|+|++|.++..
T Consensus 278 ~N~l~~v-n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l 356 (873)
T KOG4194|consen 278 TNRLQAV-NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHL 356 (873)
T ss_pred cchhhhh-hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHH
Confidence 8876655 4456777889999999987 5443222222368999999999999988899999999999999999988642
Q ss_pred eEEECCCCccccceeeecCCCCCCeEEE----ccCccccccceeecccccCC-CCc-ccCCCCCCceecCCCC
Q 037627 791 KMICTTKGFHLLEILQLIDLNDLAQWQV----EDGAMPILRGLRVTNAYKLK-IPE-RLKSIPLPTEWECDEN 857 (858)
Q Consensus 791 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~l~~L~~L~l~~c~~L~-lp~-~l~~L~~L~~~~c~~N 857 (858)
. .....++.+|++|++.++ .+..... .+..+|+|+.|.+.|| +++ +|. .|..|..|+.++..+|
T Consensus 357 ~-e~af~~lssL~~LdLr~N-~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 357 A-EGAFVGLSSLHKLDLRSN-ELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred H-hhHHHHhhhhhhhcCcCC-eEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCC
Confidence 1 123346788999999863 3433322 2346899999999999 788 887 6777888888888777
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=1.4e-23 Score=219.13 Aligned_cols=281 Identities=23% Similarity=0.294 Sum_probs=214.2
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhcccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELR 640 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~ 640 (858)
|-.|++||. +..+.+|.....|++++.|.|..+++..+|+.++.+.+|++|.+++| .+..+..+++.|+.|+
T Consensus 10 rGvDfsgND-------Fsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 10 RGVDFSGND-------FSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLR 81 (1255)
T ss_pred ecccccCCc-------CCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhH
Confidence 677999998 77678999999999999999999999999999999999999999999 4555666788888888
Q ss_pred cc---cccc--c-cccCCCCCccccccceeecccccc-cCcccccCCCeeEEeecccccc--------------------
Q 037627 641 HL---IGNF--T-GTLNIENLSNLQTLKYVERGSWAE-INPEKLVNLRDLRIISKYQEEE-------------------- 693 (858)
Q Consensus 641 ~L---~~~~--~-~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~-------------------- 693 (858)
.+ .|++ . .|..+-.+..|..|++++|+.... ..++.-.++-.|++++|++..+
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 88 2332 2 244677788888888888774322 2344455555666665553332
Q ss_pred ---cchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc---CCCCChhhhhccCCccEEEEecccCCCCC
Q 037627 694 ---FSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK---IEKLPEDLHEVLPNLECLSLKKSHLKEDP 767 (858)
Q Consensus 694 ---~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~---~~~~p~~~~~~l~~L~~L~L~~n~l~~~~ 767 (858)
+| ..+..+..|++|.|++|..+.+ .+..+..+.+|+.|++++. +..+|..+.. +.||..++||.|.+. ..
T Consensus 162 Le~LP-PQ~RRL~~LqtL~Ls~NPL~hf-QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~-l~NL~dvDlS~N~Lp-~v 237 (1255)
T KOG0444|consen 162 LEMLP-PQIRRLSMLQTLKLSNNPLNHF-QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDD-LHNLRDVDLSENNLP-IV 237 (1255)
T ss_pred hhhcC-HHHHHHhhhhhhhcCCChhhHH-HHhcCccchhhhhhhcccccchhhcCCCchhh-hhhhhhccccccCCC-cc
Confidence 22 3444455556666665554444 3444566778888888883 5678999988 699999999999985 78
Q ss_pred ccccCCCCCCCeeEeeccccCCceEEECCCCccccceeeecCCCCCCeEEEccCccccccceeecccccCC---CCcccC
Q 037627 768 MPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLNDLAQWQVEDGAMPILRGLRVTNAYKLK---IPERLK 844 (858)
Q Consensus 768 ~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~L~---lp~~l~ 844 (858)
|..+.++++|+.|+||+|.++.. ....+...+|++|+++. +.++.+|.....++.|+.|.+.+| +|+ +|++++
T Consensus 238 Pecly~l~~LrrLNLS~N~iteL--~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~N-kL~FeGiPSGIG 313 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKITEL--NMTEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNN-KLTFEGIPSGIG 313 (1255)
T ss_pred hHHHhhhhhhheeccCcCceeee--eccHHHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccC-cccccCCccchh
Confidence 89999999999999999999763 44455678999999998 568888888888999999998887 565 999999
Q ss_pred CCCCCceecCCCC
Q 037627 845 SIPLPTEWECDEN 857 (858)
Q Consensus 845 ~L~~L~~~~c~~N 857 (858)
.|..|+++...+|
T Consensus 314 KL~~Levf~aanN 326 (1255)
T KOG0444|consen 314 KLIQLEVFHAANN 326 (1255)
T ss_pred hhhhhHHHHhhcc
Confidence 9998888776665
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.74 E-value=1.6e-17 Score=204.94 Aligned_cols=258 Identities=20% Similarity=0.193 Sum_probs=187.0
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCc-ccccCcccccCCCCcEEeccccccccccchhhhccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAH-IDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKEL 639 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~-i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L 639 (858)
+.|+++++. +. .+|..+..+++|++|+|+++. ++.+| .++.+++|++|+|++|.....+|..+..+++|
T Consensus 614 ~~L~L~~s~-------l~--~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L 683 (1153)
T PLN03210 614 VKLQMQGSK-------LE--KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKL 683 (1153)
T ss_pred cEEECcCcc-------cc--ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCC
Confidence 778888887 77 788888889999999998754 66777 47888999999999887788888888888888
Q ss_pred ccccc----ccccccCCCCCccccccceeecccccccCcccccCCCeeEEeecccccccch-------------------
Q 037627 640 RHLIG----NFTGTLNIENLSNLQTLKYVERGSWAEINPEKLVNLRDLRIISKYQEEEFSF------------------- 696 (858)
Q Consensus 640 ~~L~~----~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~------------------- 696 (858)
+.|+. .+.......++++|+.|++++|...... +...++|+.|++.++.... +|.
T Consensus 684 ~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~-p~~~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~ 761 (1153)
T PLN03210 684 EDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSF-PDISTNISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEK 761 (1153)
T ss_pred CEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccc-ccccCCcCeeecCCCcccc-ccccccccccccccccccchhh
Confidence 88832 1211112226778888888777532221 1233456666665554221 110
Q ss_pred ----------hhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc--CCCCChhhhhccCCccEEEEecccCC
Q 037627 697 ----------KSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK--IEKLPEDLHEVLPNLECLSLKKSHLK 764 (858)
Q Consensus 697 ----------~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~--~~~~p~~~~~~l~~L~~L~L~~n~l~ 764 (858)
......++|+.|++++|..... .+..+..+++|+.|+++++ +..+|..+ . +++|+.|+|++|...
T Consensus 762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~-lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~-L~sL~~L~Ls~c~~L 838 (1153)
T PLN03210 762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE-LPSSIQNLHKLEHLEIENCINLETLPTGI-N-LESLESLDLSGCSRL 838 (1153)
T ss_pred ccccccccchhhhhccccchheeCCCCCCccc-cChhhhCCCCCCEEECCCCCCcCeeCCCC-C-ccccCEEECCCCCcc
Confidence 0111235677777776643221 2345788999999999984 77788776 3 799999999998754
Q ss_pred CCCccccCCCCCCCeeEeeccccCCceEEECCCCccccceeeecCCCCCCeEEEccCccccccceeecccccCC
Q 037627 765 EDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLNDLAQWQVEDGAMPILRGLRVTNAYKLK 838 (858)
Q Consensus 765 ~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~L~ 838 (858)
...|.. .++|+.|+|++|.+.. ++.....+++|+.|++.+|+++..++.....+++|+.|++++|++|+
T Consensus 839 ~~~p~~---~~nL~~L~Ls~n~i~~--iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 839 RTFPDI---STNISDLNLSRTGIEE--VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred cccccc---ccccCEeECCCCCCcc--ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 444432 4789999999998875 34455779999999999999999998888889999999999999887
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.65 E-value=5.7e-16 Score=176.82 Aligned_cols=228 Identities=17% Similarity=0.063 Sum_probs=119.7
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhcccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELR 640 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~ 640 (858)
+.|++.+|. ++ .+|.. +++|++|+|++|+++.+|.. .++|+.|++++| .+..+|..+. +|+
T Consensus 225 ~~L~L~~N~-------Lt--~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N-~L~~Lp~lp~---~L~ 285 (788)
T PRK15387 225 TTLVIPDNN-------LT--SLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN-PLTHLPALPS---GLC 285 (788)
T ss_pred CEEEccCCc-------CC--CCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCC-chhhhhhchh---hcC
Confidence 555666665 55 55532 35666666666666666542 345666666666 3344444222 233
Q ss_pred cc---ccccccccCCCCCccccccceeecccccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCcc
Q 037627 641 HL---IGNFTGTLNIENLSNLQTLKYVERGSWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTC 717 (858)
Q Consensus 641 ~L---~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 717 (858)
.| .|.++.... .+++|+.|++++|+...... ...+|+.|++.+|.... +| . ...+|+.|+|++|.+..
T Consensus 286 ~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~--lp~~L~~L~Ls~N~L~~-LP-~---lp~~Lq~LdLS~N~Ls~ 356 (788)
T PRK15387 286 KLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQLTS-LP-T---LPSGLQELSVSDNQLAS 356 (788)
T ss_pred EEECcCCccccccc--cccccceeECCCCccccCCC--CcccccccccccCcccc-cc-c---cccccceEecCCCccCC
Confidence 33 222222111 23556666666665443321 22345566666554432 22 1 11356667776665554
Q ss_pred ccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECC
Q 037627 718 FDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTT 796 (858)
Q Consensus 718 ~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 796 (858)
++. + +++|+.|++++| +..+|.. +++|+.|+|++|.++. +|.. .++|+.|++++|.++.. +
T Consensus 357 LP~---l--p~~L~~L~Ls~N~L~~LP~l----~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~LssI--P--- 418 (788)
T PRK15387 357 LPT---L--PSELYKLWAYNNRLTSLPAL----PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTSL--P--- 418 (788)
T ss_pred CCC---C--CcccceehhhccccccCccc----ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCCC--C---
Confidence 321 1 245666666664 4445532 2466777777777654 2222 35667777777766542 1
Q ss_pred CCccccceeeecCCCCCCeEEEccCccccccceeecccc
Q 037627 797 KGFHLLEILQLIDLNDLAQWQVEDGAMPILRGLRVTNAY 835 (858)
Q Consensus 797 ~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 835 (858)
..+.+|+.|++++ +.++.+|.....+++|+.|++++|+
T Consensus 419 ~l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 419 MLPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred cchhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 1234566677765 3466666555666777777777774
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.63 E-value=2.7e-18 Score=171.44 Aligned_cols=232 Identities=27% Similarity=0.313 Sum_probs=185.0
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhcccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELR 640 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~ 640 (858)
-||++++|. +. .+|++++.+..++.|+.++|+++.+|+.+..+.+|..|++++| ....+|++++.+..|.
T Consensus 71 ~vl~~~~n~-------l~--~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~ 140 (565)
T KOG0472|consen 71 TVLNVHDNK-------LS--QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN-ELKELPDSIGRLLDLE 140 (565)
T ss_pred eEEEeccch-------hh--hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc-ceeecCchHHHHhhhh
Confidence 788888888 66 8999999999999999999999999999999999999999999 6777888899888888
Q ss_pred cc---cccc-ccccCCCCCccccccceeecccccccC-cccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCC
Q 037627 641 HL---IGNF-TGTLNIENLSNLQTLKYVERGSWAEIN-PEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDD 715 (858)
Q Consensus 641 ~L---~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 715 (858)
.| +|++ +.|.++.++.+|..|++.+|......+ .-.++.|++|+...|- .+.+| ..++.+.+|+.|++..|.+
T Consensus 141 dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP-~~lg~l~~L~~LyL~~Nki 218 (565)
T KOG0472|consen 141 DLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNL-LETLP-PELGGLESLELLYLRRNKI 218 (565)
T ss_pred hhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhh-hhcCC-hhhcchhhhHHHHhhhccc
Confidence 88 3333 556688889999999998888554432 2358888888877764 45566 7889999999999988877
Q ss_pred ccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEE
Q 037627 716 TCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMIC 794 (858)
Q Consensus 716 ~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~ 794 (858)
. .++.|..|+.|.+|+++.| +..+|..+...+++|..|||.+|++. ..|..+.-+.+|..||+|+|.+++. +.
T Consensus 219 ~---~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~L--p~ 292 (565)
T KOG0472|consen 219 R---FLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSL--PY 292 (565)
T ss_pred c---cCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccC--Cc
Confidence 6 4457788888888888876 67788888766888888888888885 6677788888888888888888763 45
Q ss_pred CCCCccccceeeecCCC
Q 037627 795 TTKGFHLLEILQLIDLN 811 (858)
Q Consensus 795 ~~~~~~~L~~L~l~~~~ 811 (858)
..+.+ +|+.|.+.+++
T Consensus 293 sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 293 SLGNL-HLKFLALEGNP 308 (565)
T ss_pred ccccc-eeeehhhcCCc
Confidence 55566 67777766543
No 13
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.62 E-value=4.6e-14 Score=173.75 Aligned_cols=298 Identities=15% Similarity=0.149 Sum_probs=184.7
Q ss_pred cCCceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeC-CCCCHHHHHHHHHH
Q 037627 174 IEGNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVS-QDYDTKDLLLRIIR 252 (858)
Q Consensus 174 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~ 252 (858)
.++.+|-|..-.+++. . ....+++.|+|++|.||||++.++.+. ++.++|+++. ...++..++..++.
T Consensus 12 ~~~~~~~R~rl~~~l~----~-~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~ 80 (903)
T PRK04841 12 RLHNTVVRERLLAKLS----G-ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIA 80 (903)
T ss_pred CccccCcchHHHHHHh----c-ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHH
Confidence 3456677775555443 2 235789999999999999999999862 2259999996 44566777788877
Q ss_pred hccccccc--hh-------hhhccHHHHHHHHHHHhc--CceEEEEEEcCCChh--hHH-HHHhhCCCCCCCcEEEEEeC
Q 037627 253 SFKINVLT--RE-------LEEMREEDLERYLHNCLQ--GKSYLVVVDDAWQKE--TWE-SLKRAFPDNKNGSRVIITTR 318 (858)
Q Consensus 253 ~l~~~~~~--~~-------~~~~~~~~~~~~l~~~l~--~~~~LlvlDd~~~~~--~~~-~l~~~l~~~~~gs~ilvTtR 318 (858)
.+....+. .. ....+...+...+...+. +.+++|||||++..+ ... .+...+....++.++|||||
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR 160 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSR 160 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 77532211 00 011122333433433332 679999999997542 223 33333444556778999999
Q ss_pred chhHHhh--cCCCCceeecC----CCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhHhcCCChH
Q 037627 319 IKEVAER--SDENAYAHKLR----FLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVLGGLLSMKKPQ 392 (858)
Q Consensus 319 ~~~~~~~--~~~~~~~~~l~----~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~~~~ 392 (858)
....... .........+. +|+.+|+.++|....+..- ..+.+.+|++.|+|+|+++..++..+......
T Consensus 161 ~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~-----~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~ 235 (903)
T PRK04841 161 NLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI-----EAAESSRLCDDVEGWATALQLIALSARQNNSS 235 (903)
T ss_pred CCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC-----CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc
Confidence 8421111 00111234555 9999999999987654322 14567899999999999999998877543210
Q ss_pred HHHHHHHHHHhhhhc-CccchhhHHH-hhhccCcHHHHHHHhHhcCCCCCceeCHHHHHHHHHHcCccccCCCCCHHHHH
Q 037627 393 EWRRVRDHLWQHLKN-DCIHISSLLN-LSFRNLSHELKLCFLYLGLFPEDFEINVQTLIRLLVAEGFIQQDTDRSTEEVA 470 (858)
Q Consensus 393 ~w~~~~~~l~~~~~~-~~~~i~~~l~-~s~~~L~~~~k~~f~~la~fp~~~~i~~~~l~~~w~aeg~i~~~~~~~~~~~~ 470 (858)
....... +.. ....+...+. -.++.||++.+..+..+|+++ .++.+.+-... | .+.+
T Consensus 236 -~~~~~~~----~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l~---~----------~~~~ 294 (903)
T PRK04841 236 -LHDSARR----LAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRVT---G----------EENG 294 (903)
T ss_pred -hhhhhHh----hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHHc---C----------CCcH
Confidence 0001111 111 1122444333 347899999999999999986 34433322211 1 1224
Q ss_pred HHHHHHHHhcccccccccCCCcEeEEEEcHhHHHHHHHHh
Q 037627 471 GEILDELINRSLIQIDKRCWGRIATCRVHDLLRDLAIEQA 510 (858)
Q Consensus 471 ~~~l~~L~~~~ll~~~~~~~~~~~~~~~H~lir~~~~~~~ 510 (858)
...+++|.+.+++....+..+ .+|+.|++++++++...
T Consensus 295 ~~~L~~l~~~~l~~~~~~~~~--~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 295 QMRLEELERQGLFIQRMDDSG--EWFRYHPLFASFLRHRC 332 (903)
T ss_pred HHHHHHHHHCCCeeEeecCCC--CEEehhHHHHHHHHHHH
Confidence 678999999998653321122 46888999999998875
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.61 E-value=2.7e-18 Score=171.52 Aligned_cols=255 Identities=22% Similarity=0.223 Sum_probs=194.0
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhcccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELR 640 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~ 640 (858)
..|.+++|. +. .+.+.+.++..|.+|++.+|++.++|++++.+..++.|+.++| ....+|+.++.+.+|+
T Consensus 48 ~~lils~N~-------l~--~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~ 117 (565)
T KOG0472|consen 48 QKLILSHND-------LE--VLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLV 117 (565)
T ss_pred hhhhhccCc-------hh--hccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhh
Confidence 456777887 66 6778888999999999999999999999999999999999999 7889999999999999
Q ss_pred ccc---ccc-ccccCCCCCccccccceeeccccccc-CcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCC
Q 037627 641 HLI---GNF-TGTLNIENLSNLQTLKYVERGSWAEI-NPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDD 715 (858)
Q Consensus 641 ~L~---~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 715 (858)
+|+ +.+ ..+.+++.+-.|..|+..+|+..+.. ....+.+|..|.+.+|......+ ..+. ++.|+.|+...|..
T Consensus 118 ~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~-~~i~-m~~L~~ld~~~N~L 195 (565)
T KOG0472|consen 118 KLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPE-NHIA-MKRLKHLDCNSNLL 195 (565)
T ss_pred hhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCH-HHHH-HHHHHhcccchhhh
Confidence 993 333 45668889999999998888865543 35566777788888776554444 4444 88888888877765
Q ss_pred ccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEE
Q 037627 716 TCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMIC 794 (858)
Q Consensus 716 ~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~ 794 (858)
+.+ ++.++.+.+|..|++..| +..+| .+.. +..|.+|+++.|++...+.....++++|..|||..|++... +.
T Consensus 196 ~tl--P~~lg~l~~L~~LyL~~Nki~~lP-ef~g-cs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~--Pd 269 (565)
T KOG0472|consen 196 ETL--PPELGGLESLELLYLRRNKIRFLP-EFPG-CSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEV--PD 269 (565)
T ss_pred hcC--ChhhcchhhhHHHHhhhcccccCC-CCCc-cHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccC--ch
Confidence 543 356777778888888876 55566 5555 67888888888887644444555888888888888887652 22
Q ss_pred CCCCccccceeeecCCCCCCeEEEccCccccccceeecccc
Q 037627 795 TTKGFHLLEILQLIDLNDLAQWQVEDGAMPILRGLRVTNAY 835 (858)
Q Consensus 795 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 835 (858)
..-.+.+|++|++++ +.++.+|...+++ .|+.|.+.|||
T Consensus 270 e~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 270 EICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred HHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCc
Confidence 333466788888886 5677888888888 78888888887
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.59 E-value=4.1e-17 Score=179.77 Aligned_cols=241 Identities=22% Similarity=0.228 Sum_probs=158.7
Q ss_pred cccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhcccccccc---ccccc-cccCCCCCccccccceee
Q 037627 590 VNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELRHL---IGNFT-GTLNIENLSNLQTLKYVE 665 (858)
Q Consensus 590 ~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L---~~~~~-~~~~~~~l~~L~~L~l~~ 665 (858)
.+|+++++++|+++.+|+.++.+.+|+.+++.+| .+..+|..+..+++|+.| +|... .+...+.+++|++|++..
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence 5788999999999888888888999999999888 557888888888888888 33333 233556688888888888
Q ss_pred cccccccCc--cccc-CCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCC
Q 037627 666 RGSWAEINP--EKLV-NLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEK 741 (858)
Q Consensus 666 ~~~~~~~~~--~~l~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~ 741 (858)
|+....... ..+. .|+.|..+.+....... ..=..++.|+.|++.+|.++.. .++.+..+.+|+.|+|++| +.+
T Consensus 320 N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~-~~e~~~~~Lq~LylanN~Ltd~-c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 320 NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPS-YEENNHAALQELYLANNHLTDS-CFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred ccccccchHHHhhhhHHHHHHhhhhcccccccc-ccchhhHHHHHHHHhcCccccc-chhhhccccceeeeeeccccccc
Confidence 875443321 1111 12233333322211111 1122345577777777766544 5566777777888888776 666
Q ss_pred CChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECCCCccccceeeecCCCCCCeEEEccC
Q 037627 742 LPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLNDLAQWQVEDG 821 (858)
Q Consensus 742 ~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 821 (858)
+|......++.|+.|+||+|+++ .+|..+.+++.|++|...+|.+.. ++ ....++.|+.++++ |++++.......
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~--fP-e~~~l~qL~~lDlS-~N~L~~~~l~~~ 472 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS--FP-ELAQLPQLKVLDLS-CNNLSEVTLPEA 472 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee--ch-hhhhcCcceEEecc-cchhhhhhhhhh
Confidence 77776666777778888888775 445777777777777777777643 12 44566777777777 566766655444
Q ss_pred cc-ccccceeecccccCC
Q 037627 822 AM-PILRGLRVTNAYKLK 838 (858)
Q Consensus 822 ~l-~~L~~L~l~~c~~L~ 838 (858)
.- |+|++|+++||+.+.
T Consensus 473 ~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 473 LPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred CCCcccceeeccCCcccc
Confidence 33 678888888777554
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.55 E-value=1.1e-14 Score=166.39 Aligned_cols=247 Identities=20% Similarity=0.115 Sum_probs=153.2
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhcccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELR 640 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~ 640 (858)
.+|+++++. ++ .+|..+. ++|+.|++++|+++.+|.. +++|++|++++| .+..+|..+ ++|+
T Consensus 204 ~~LdLs~~~-------Lt--sLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~lp---~sL~ 265 (788)
T PRK15387 204 AVLNVGESG-------LT--TLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVLP---PGLL 265 (788)
T ss_pred cEEEcCCCC-------CC--cCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCcc---cccc
Confidence 567777776 66 7777665 3778888888888877752 467888888887 444566433 3455
Q ss_pred cc---ccccccccCCCCCccccccceeecccccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCcc
Q 037627 641 HL---IGNFTGTLNIENLSNLQTLKYVERGSWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTC 717 (858)
Q Consensus 641 ~L---~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 717 (858)
.| .|.+..... .+++|+.|++++|...... ..+++|+.|++++|.... ++ .. ..+|+.|++++|.+..
T Consensus 266 ~L~Ls~N~L~~Lp~--lp~~L~~L~Ls~N~Lt~LP--~~p~~L~~LdLS~N~L~~-Lp-~l---p~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 266 ELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTSLP--VLPPGLQELSVSDNQLAS-LP-AL---PSELCKLWAYNNQLTS 336 (788)
T ss_pred eeeccCCchhhhhh--chhhcCEEECcCCcccccc--ccccccceeECCCCcccc-CC-CC---cccccccccccCcccc
Confidence 55 222222111 2356777777777655432 234677788887775443 22 11 2356677777776654
Q ss_pred ccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECC
Q 037627 718 FDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTT 796 (858)
Q Consensus 718 ~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 796 (858)
++. .+.+|+.|+|++| +..+|.. .++|+.|++++|.++. +|.. .++|+.|+|++|.+++..
T Consensus 337 LP~-----lp~~Lq~LdLS~N~Ls~LP~l----p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~LP----- 398 (788)
T PRK15387 337 LPT-----LPSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSLP----- 398 (788)
T ss_pred ccc-----cccccceEecCCCccCCCCCC----Ccccceehhhcccccc-Cccc---ccccceEEecCCcccCCC-----
Confidence 332 1246788888775 5666642 3677777888887764 3332 356778888877776421
Q ss_pred CCccccceeeecCCCCCCeEEEccCccccccceeecccccCC-CCcccCCCCCCceecCCCC
Q 037627 797 KGFHLLEILQLIDLNDLAQWQVEDGAMPILRGLRVTNAYKLK-IPERLKSIPLPTEWECDEN 857 (858)
Q Consensus 797 ~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~L~-lp~~l~~L~~L~~~~c~~N 857 (858)
...++|+.|+++++ .+..+|. .+.+|+.|++++| +++ +|..+..++.|..++.++|
T Consensus 399 ~l~s~L~~LdLS~N-~LssIP~---l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 399 VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred CcccCCCEEEccCC-cCCCCCc---chhhhhhhhhccC-cccccChHHhhccCCCeEECCCC
Confidence 12457778888764 4555543 2346777788777 466 8877777777777777665
No 17
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.54 E-value=5.1e-13 Score=147.66 Aligned_cols=303 Identities=18% Similarity=0.173 Sum_probs=197.0
Q ss_pred CcCCceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCC-CCCHHHHHHHHH
Q 037627 173 SIEGNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQ-DYDTKDLLLRII 251 (858)
Q Consensus 173 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~ 251 (858)
..+...|-|..-+++ |... ...|.+.|..|+|.|||||+.+++. +... -..+.|++++. ..++..++..++
T Consensus 16 ~~~~~~v~R~rL~~~----L~~~-~~~RL~li~APAGfGKttl~aq~~~--~~~~-~~~v~Wlslde~dndp~rF~~yLi 87 (894)
T COG2909 16 VRPDNYVVRPRLLDR----LRRA-NDYRLILISAPAGFGKTTLLAQWRE--LAAD-GAAVAWLSLDESDNDPARFLSYLI 87 (894)
T ss_pred CCcccccccHHHHHH----HhcC-CCceEEEEeCCCCCcHHHHHHHHHH--hcCc-ccceeEeecCCccCCHHHHHHHHH
Confidence 335556666654444 4333 4689999999999999999999985 2222 24599999865 457888999999
Q ss_pred Hhcccccc--chhh-------hhccHHHHHHHHHHHhc--CceEEEEEEcCCCh---hhHHHHHhhCCCCCCCcEEEEEe
Q 037627 252 RSFKINVL--TREL-------EEMREEDLERYLHNCLQ--GKSYLVVVDDAWQK---ETWESLKRAFPDNKNGSRVIITT 317 (858)
Q Consensus 252 ~~l~~~~~--~~~~-------~~~~~~~~~~~l~~~l~--~~~~LlvlDd~~~~---~~~~~l~~~l~~~~~gs~ilvTt 317 (858)
..++...+ .++. ...+...+...+...+. .++..+||||.+-. .--..+...+...+++-.+||||
T Consensus 88 ~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~S 167 (894)
T COG2909 88 AALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTS 167 (894)
T ss_pred HHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEe
Confidence 88885443 1111 12233445555554443 46899999998743 22334444555667788999999
Q ss_pred CchhHHhhcCC--CCceeec----CCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhHhcCC-C
Q 037627 318 RIKEVAERSDE--NAYAHKL----RFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVLGGLLSMK-K 390 (858)
Q Consensus 318 R~~~~~~~~~~--~~~~~~l----~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~-~ 390 (858)
|+..-...... ....+++ =.|+.+|+.++|.......-+ +...+.+.+..+|.+-|+..++-.++.. +
T Consensus 168 R~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld-----~~~~~~L~~~teGW~~al~L~aLa~~~~~~ 242 (894)
T COG2909 168 RSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD-----AADLKALYDRTEGWAAALQLIALALRNNTS 242 (894)
T ss_pred ccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC-----hHHHHHHHhhcccHHHHHHHHHHHccCCCc
Confidence 98743221111 1122222 248999999999876533222 5667899999999999999999999844 4
Q ss_pred hHHHHHHHHHHHhhhhcCccchhhHHHhhhccCcHHHHHHHhHhcCCCCCceeCHHHHHHHHHHcCccccCCCCCHHHHH
Q 037627 391 PQEWRRVRDHLWQHLKNDCIHISSLLNLSFRNLSHELKLCFLYLGLFPEDFEINVQTLIRLLVAEGFIQQDTDRSTEEVA 470 (858)
Q Consensus 391 ~~~w~~~~~~l~~~~~~~~~~i~~~l~~s~~~L~~~~k~~f~~la~fp~~~~i~~~~l~~~w~aeg~i~~~~~~~~~~~~ 470 (858)
.+.-...+....+.+.++ ...--++.||+++|..++.+|+++.- . +.|+... +.++.+
T Consensus 243 ~~q~~~~LsG~~~~l~dY------L~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~L------------tg~~ng 300 (894)
T COG2909 243 AEQSLRGLSGAASHLSDY------LVEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNAL------------TGEENG 300 (894)
T ss_pred HHHHhhhccchHHHHHHH------HHHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHHH------------hcCCcH
Confidence 433333332222222211 12334789999999999999998542 1 2333222 123447
Q ss_pred HHHHHHHHhcccccccccCCCcEeEEEEcHhHHHHHHHHhcc
Q 037627 471 GEILDELINRSLIQIDKRCWGRIATCRVHDLLRDLAIEQAKK 512 (858)
Q Consensus 471 ~~~l~~L~~~~ll~~~~~~~~~~~~~~~H~lir~~~~~~~~~ 512 (858)
...+++|.+++|+-..-+.. ..+|+.|.++.||.+.....
T Consensus 301 ~amLe~L~~~gLFl~~Ldd~--~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 301 QAMLEELERRGLFLQRLDDE--GQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HHHHHHHHhCCCceeeecCC--CceeehhHHHHHHHHhhhcc
Confidence 77899999999865433222 35799999999999887654
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.53 E-value=2.2e-16 Score=174.13 Aligned_cols=254 Identities=21% Similarity=0.257 Sum_probs=193.6
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhcccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELR 640 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~ 640 (858)
.+++++.+. +. .+|++++.+.+|+.|++.+|++..+|..+....+|+.|.+.+| .+..+|+....+++|+
T Consensus 244 ~~~dis~n~-------l~--~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~ 313 (1081)
T KOG0618|consen 244 QYLDISHNN-------LS--NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLR 313 (1081)
T ss_pred eeeecchhh-------hh--cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceee
Confidence 788999998 77 8999999999999999999999999999999999999999999 7888888888899999
Q ss_pred cccc---cc-cccc-CCCCCc-cccccceeecccccccC--cccccCCCeeEEeecccccccchhhhhcCCCCCeEEeec
Q 037627 641 HLIG---NF-TGTL-NIENLS-NLQTLKYVERGSWAEIN--PEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRL 712 (858)
Q Consensus 641 ~L~~---~~-~~~~-~~~~l~-~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 712 (858)
+|+. .+ ..|. .+..+. .|..|+.+.|....... -..++.|+.|++.+|....... ..+.++++|+.|+|++
T Consensus 314 tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~-p~l~~~~hLKVLhLsy 392 (1081)
T KOG0618|consen 314 TLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCF-PVLVNFKHLKVLHLSY 392 (1081)
T ss_pred eeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccch-hhhccccceeeeeecc
Confidence 9942 22 1222 122222 25555555554333222 2356778899999998776665 7889999999999999
Q ss_pred cCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCce
Q 037627 713 SDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKK 791 (858)
Q Consensus 713 ~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~ 791 (858)
|.++.++ -..+.+++.|+.|+|||| +..+|..+.. ++.|+.|...+|++.. .| .+..++.|+.+|+|.|.++...
T Consensus 393 NrL~~fp-as~~~kle~LeeL~LSGNkL~~Lp~tva~-~~~L~tL~ahsN~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~ 468 (1081)
T KOG0618|consen 393 NRLNSFP-ASKLRKLEELEELNLSGNKLTTLPDTVAN-LGRLHTLRAHSNQLLS-FP-ELAQLPQLKVLDLSCNNLSEVT 468 (1081)
T ss_pred cccccCC-HHHHhchHHhHHHhcccchhhhhhHHHHh-hhhhHHHhhcCCceee-ch-hhhhcCcceEEecccchhhhhh
Confidence 9888663 345778899999999997 7889988887 6999999999999863 44 8899999999999999987643
Q ss_pred EEECCCCccccceeeecCCCCCCeEEEccCccccccceeecc
Q 037627 792 MICTTKGFHLLEILQLIDLNDLAQWQVEDGAMPILRGLRVTN 833 (858)
Q Consensus 792 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 833 (858)
++.... -|+|++|+++++.. ..++...|+.++.+....
T Consensus 469 l~~~~p-~p~LkyLdlSGN~~---l~~d~~~l~~l~~l~~~~ 506 (1081)
T KOG0618|consen 469 LPEALP-SPNLKYLDLSGNTR---LVFDHKTLKVLKSLSQMD 506 (1081)
T ss_pred hhhhCC-CcccceeeccCCcc---cccchhhhHHhhhhhhee
Confidence 332221 27999999998654 334444566655554443
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.52 E-value=1.3e-14 Score=167.05 Aligned_cols=220 Identities=21% Similarity=0.248 Sum_probs=135.8
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhcccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELR 640 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~ 640 (858)
+.|+|++|. ++ .+|..+. .+|++|++++|.++.+|..+. .+|+.|+|++| .+..+|..+
T Consensus 202 ~~L~Ls~N~-------Lt--sLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l------- 260 (754)
T PRK15370 202 TTLILDNNE-------LK--SLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN-RITELPERL------- 260 (754)
T ss_pred cEEEecCCC-------CC--cCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC-ccCcCChhH-------
Confidence 555666665 55 5555443 356666666666666655443 35666666666 333444432
Q ss_pred ccccccccccCCCCCccccccceeecccccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccC
Q 037627 641 HLIGNFTGTLNIENLSNLQTLKYVERGSWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDS 720 (858)
Q Consensus 641 ~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 720 (858)
..+|+.|++++|+....+ ..-.++|+.|++++|.... ++ ..+ .++|+.|++++|.+..++.
T Consensus 261 --------------~s~L~~L~Ls~N~L~~LP-~~l~~sL~~L~Ls~N~Lt~-LP-~~l--p~sL~~L~Ls~N~Lt~LP~ 321 (754)
T PRK15370 261 --------------PSALQSLDLFHNKISCLP-ENLPEELRYLSVYDNSIRT-LP-AHL--PSGITHLNVQSNSLTALPE 321 (754)
T ss_pred --------------hCCCCEEECcCCccCccc-cccCCCCcEEECCCCcccc-Cc-ccc--hhhHHHHHhcCCccccCCc
Confidence 235777777777654332 1223578888888886543 33 222 1467888888887664421
Q ss_pred CCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECCCCc
Q 037627 721 LQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGF 799 (858)
Q Consensus 721 ~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~ 799 (858)
..+++|+.|++++| +..+|..+ +++|+.|+|++|+++. +|..+ .++|+.|+|++|.++.. +....
T Consensus 322 ----~l~~sL~~L~Ls~N~Lt~LP~~l---~~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~L----P~~l~ 387 (754)
T PRK15370 322 ----TLPPGLKTLEAGENALTSLPASL---PPELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTNL----PENLP 387 (754)
T ss_pred ----cccccceeccccCCccccCChhh---cCcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCCC----CHhHH
Confidence 12357888888885 66677655 4788999999988863 44444 36888999998888642 11223
Q ss_pred cccceeeecCCCCCCeEEEcc----Cccccccceeecccc
Q 037627 800 HLLEILQLIDLNDLAQWQVED----GAMPILRGLRVTNAY 835 (858)
Q Consensus 800 ~~L~~L~l~~~~~l~~~~~~~----~~l~~L~~L~l~~c~ 835 (858)
+.|+.|++++ +.+..+|... +.+|++..|++.+|+
T Consensus 388 ~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 388 AALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 4788888887 4566665432 234778888888886
No 20
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.46 E-value=2.4e-11 Score=134.02 Aligned_cols=314 Identities=15% Similarity=0.074 Sum_probs=183.8
Q ss_pred CCCcCCceeeccccHHHHHHHHhcC--CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHH
Q 037627 171 SFSIEGNVVGFDDDVSKLLAKLLNK--EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLL 248 (858)
Q Consensus 171 ~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 248 (858)
+...|+.++||++|++++...+... +.....+.|+|++|+|||++++.++++.......-.++++++....+...++.
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHH
Confidence 3346678999999999999998543 23445688999999999999999998432222123466777777777888999
Q ss_pred HHHHhccccccchhhhhccHHHHHHHHHHHhc--CceEEEEEEcCCChh------hHHHHHhhCCCCC-CCcEEEEEeCc
Q 037627 249 RIIRSFKINVLTRELEEMREEDLERYLHNCLQ--GKSYLVVVDDAWQKE------TWESLKRAFPDNK-NGSRVIITTRI 319 (858)
Q Consensus 249 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDd~~~~~------~~~~l~~~l~~~~-~gs~ilvTtR~ 319 (858)
.++.++.....+ ....+.+.+...+.+.+. +++.+||||+++... .+..+...+.... .+..+|.++..
T Consensus 105 ~i~~~l~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~ 182 (394)
T PRK00411 105 EIARQLFGHPPP--SSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSD 182 (394)
T ss_pred HHHHHhcCCCCC--CCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECC
Confidence 999988752211 112234556666666664 457899999998642 2334433322221 12335666655
Q ss_pred hhHHhhcC------CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHH----cCCChHHHHHHHhHh--c
Q 037627 320 KEVAERSD------ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEK----CRGLPLAIVVLGGLL--S 387 (858)
Q Consensus 320 ~~~~~~~~------~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~----~~G~Plai~~~~~~l--~ 387 (858)
..+..... .....+.+.+++.++..+++..++..........++.++.|++. .|..+.|+.++-.+. +
T Consensus 183 ~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a 262 (394)
T PRK00411 183 LTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIA 262 (394)
T ss_pred cchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 43332211 11146899999999999999987643211101112333444444 455667776664322 1
Q ss_pred ---CC---ChHHHHHHHHHHHhhhhcCccchhhHHHhhhccCcHHHHHHHhHhcCCCC--CceeCHHHHHHHH--HHcCc
Q 037627 388 ---MK---KPQEWRRVRDHLWQHLKNDCIHISSLLNLSFRNLSHELKLCFLYLGLFPE--DFEINVQTLIRLL--VAEGF 457 (858)
Q Consensus 388 ---~~---~~~~w~~~~~~l~~~~~~~~~~i~~~l~~s~~~L~~~~k~~f~~la~fp~--~~~i~~~~l~~~w--~aeg~ 457 (858)
+. +.+....+.+... .....-.+..||.+.|..+..++..-. ...+....+.... +++.+
T Consensus 263 ~~~~~~~I~~~~v~~a~~~~~----------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~ 332 (394)
T PRK00411 263 EREGSRKVTEEDVRKAYEKSE----------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEEL 332 (394)
T ss_pred HHcCCCCcCHHHHHHHHHHHH----------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHc
Confidence 11 3445554444331 123445688999999888777663321 1235555554322 11111
Q ss_pred cccCCCCCHHHHHHHHHHHHHhcccccccc---cCCCcEeEEEEc
Q 037627 458 IQQDTDRSTEEVAGEILDELINRSLIQIDK---RCWGRIATCRVH 499 (858)
Q Consensus 458 i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~---~~~~~~~~~~~H 499 (858)
- .. ........+++..|...|+|.... ...|+...++++
T Consensus 333 ~--~~-~~~~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~ 374 (394)
T PRK00411 333 G--YE-PRTHTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLS 374 (394)
T ss_pred C--CC-cCcHHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEec
Confidence 0 00 112234567999999999998643 234555556554
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.42 E-value=1.9e-13 Score=157.63 Aligned_cols=239 Identities=15% Similarity=0.133 Sum_probs=153.9
Q ss_pred cCCCeeEEEEEecccCCCCCCCCCCCCccccccCCeeeeccCCccccccccCCCCCccccccCCcccceEeccCCccccc
Q 037627 526 ISSSCRRQAVHFRIMGDWGLGHCNPRSSSLLLFNQRVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVI 605 (858)
Q Consensus 526 ~~~~~r~l~~~~~~~~~~~~~~~~~~lr~l~~~~~r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~l 605 (858)
.+...+.+.+..+.+..++... . .+.+.|++++|. ++ .+|..+. .+|+.|+|++|.+..+
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l-~--------~nL~~L~Ls~N~-------Lt--sLP~~l~--~~L~~L~Ls~N~L~~L 256 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENL-Q--------GNIKTLYANSNQ-------LT--SIPATLP--DTIQEMELSINRITEL 256 (754)
T ss_pred cccCCcEEEecCCCCCcCChhh-c--------cCCCEEECCCCc-------cc--cCChhhh--ccccEEECcCCccCcC
Confidence 3455677777655555444321 1 133788888888 77 7877654 4789999999999888
Q ss_pred CcccccCCCCcEEeccccccccccchhhhccccccccccccccccCCCCCccccccceeecccccccCcccccCCCeeEE
Q 037627 606 PSCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGNFTGTLNIENLSNLQTLKYVERGSWAEINPEKLVNLRDLRI 685 (858)
Q Consensus 606 p~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l 685 (858)
|..+. .+|+.|++++| .+..+|..+ .++|+.|++++|+...... .-.++|+.|++
T Consensus 257 P~~l~--s~L~~L~Ls~N-~L~~LP~~l---------------------~~sL~~L~Ls~N~Lt~LP~-~lp~sL~~L~L 311 (754)
T PRK15370 257 PERLP--SALQSLDLFHN-KISCLPENL---------------------PEELRYLSVYDNSIRTLPA-HLPSGITHLNV 311 (754)
T ss_pred ChhHh--CCCCEEECcCC-ccCcccccc---------------------CCCCcEEECCCCccccCcc-cchhhHHHHHh
Confidence 87764 57899999888 444566532 1356667777776443321 12246788888
Q ss_pred eecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCC
Q 037627 686 ISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLK 764 (858)
Q Consensus 686 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~ 764 (858)
++|.... ++ ..+ .++|+.|++++|.+..++. .+ +++|+.|++++| +..+|..+ .++|+.|+|++|.++
T Consensus 312 s~N~Lt~-LP-~~l--~~sL~~L~Ls~N~Lt~LP~--~l--~~sL~~L~Ls~N~L~~LP~~l---p~~L~~LdLs~N~Lt 380 (754)
T PRK15370 312 QSNSLTA-LP-ETL--PPGLKTLEAGENALTSLPA--SL--PPELQVLDVSKNQITVLPETL---PPTITTLDVSRNALT 380 (754)
T ss_pred cCCcccc-CC-ccc--cccceeccccCCccccCCh--hh--cCcccEEECCCCCCCcCChhh---cCCcCEEECCCCcCC
Confidence 8876543 33 222 2578888888887665421 12 368899999885 66677655 478999999999887
Q ss_pred CCCccccCCCCCCCeeEeeccccCCceE--EECCCCccccceeeecCCCCCCeEEEccCccccccce
Q 037627 765 EDPMPKLEKLPNLTILDLGLKSYGGKKM--ICTTKGFHLLEILQLIDLNDLAQWQVEDGAMPILRGL 829 (858)
Q Consensus 765 ~~~~~~l~~l~~L~~L~L~~n~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L 829 (858)
.. |..+. ++|+.|++++|.+..... +.....++++..|++.+++ +. ...+++|+.|
T Consensus 381 ~L-P~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np-ls-----~~tl~~L~~L 438 (754)
T PRK15370 381 NL-PENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP-FS-----ERTIQNMQRL 438 (754)
T ss_pred CC-CHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC-cc-----HHHHHHHHHh
Confidence 44 44443 368888999888864321 1112234677888887744 22 3456666666
No 22
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.39 E-value=1.4e-10 Score=126.52 Aligned_cols=300 Identities=16% Similarity=0.160 Sum_probs=175.5
Q ss_pred CcCCceeeccccHHHHHHHHhcC--CCCcEEEEEEecCcchHHHHHHHHhcCcccc-CCc---ceEEEEEeCCCCCHHHH
Q 037627 173 SIEGNVVGFDDDVSKLLAKLLNK--EPRRFVISVYGMGGLGKTTLARKLYHNNDVK-NKF---DRCAWVSVSQDYDTKDL 246 (858)
Q Consensus 173 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~-~~f---~~~~wv~~~~~~~~~~~ 246 (858)
..|+.++||+.|+++|...+... +.....+.|+|++|+|||++++.+++..... ... -..+|+++....+...+
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 44568999999999999998642 2345679999999999999999999742111 110 24677887777778889
Q ss_pred HHHHHHhcc---ccccchhhhhccHHHHHHHHHHHh--cCceEEEEEEcCCChh-----hHHHHHhhC--CCCC-CCcEE
Q 037627 247 LLRIIRSFK---INVLTRELEEMREEDLERYLHNCL--QGKSYLVVVDDAWQKE-----TWESLKRAF--PDNK-NGSRV 313 (858)
Q Consensus 247 ~~~i~~~l~---~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDd~~~~~-----~~~~l~~~l--~~~~-~gs~i 313 (858)
+..++.++. ...+. ...+.++....+.+.+ .+++++||||+++... .+..+.... .... ....+
T Consensus 92 ~~~i~~~l~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~l 168 (365)
T TIGR02928 92 LVELANQLRGSGEEVPT---TGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGV 168 (365)
T ss_pred HHHHHHHHhhcCCCCCC---CCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEE
Confidence 999999884 22111 1122334444555554 3568899999998661 122332221 1111 23345
Q ss_pred EEEeCchhHHhhcC----CC--CceeecCCCChhHHHHHHHHHhcC---CCCCChhHHHHHHHHHHHcCCChHHHHHHHh
Q 037627 314 IITTRIKEVAERSD----EN--AYAHKLRFLRSDESWELFCEKAFR---KSNGSEGLEKLGREMVEKCRGLPLAIVVLGG 384 (858)
Q Consensus 314 lvTtR~~~~~~~~~----~~--~~~~~l~~L~~~e~~~l~~~~~~~---~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~ 384 (858)
|+++.......... .. ...+.+.+.+.+|..+++..++.. .....++..+...+++..+.|.|..+..+..
T Consensus 169 I~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~ 248 (365)
T TIGR02928 169 IGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLR 248 (365)
T ss_pred EEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 55554443221111 11 146899999999999999988742 1111333334556677777899854433221
Q ss_pred H-h----c-C--C-ChHHHHHHHHHHHhhhhcCccchhhHHHhhhccCcHHHHHHHhHhcCCC--CCceeCHHHHHHHHH
Q 037627 385 L-L----S-M--K-KPQEWRRVRDHLWQHLKNDCIHISSLLNLSFRNLSHELKLCFLYLGLFP--EDFEINVQTLIRLLV 453 (858)
Q Consensus 385 ~-l----~-~--~-~~~~w~~~~~~l~~~~~~~~~~i~~~l~~s~~~L~~~~k~~f~~la~fp--~~~~i~~~~l~~~w~ 453 (858)
. . . + . +.+....+.+... .....-++..||.+.+..+..++..- ++..+....+...+-
T Consensus 249 ~a~~~a~~~~~~~it~~~v~~a~~~~~----------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~ 318 (365)
T TIGR02928 249 VAGEIAEREGAERVTEDHVEKAQEKIE----------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYK 318 (365)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 1 1 1 1 1 3444444333331 12334567889999887777655221 333456666655331
Q ss_pred -HcCccccCCCCCHHHHHHHHHHHHHhcccccccc
Q 037627 454 -AEGFIQQDTDRSTEEVAGEILDELINRSLIQIDK 487 (858)
Q Consensus 454 -aeg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~ 487 (858)
....+. ..........+++..|...|+|+...
T Consensus 319 ~~~~~~~--~~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 319 EVCEDIG--VDPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHHhcC--CCCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 111111 11223456778899999999998754
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.38 E-value=1.1e-14 Score=146.03 Aligned_cols=260 Identities=18% Similarity=0.159 Sum_probs=138.8
Q ss_pred eeeeccCCccccccccCCCCCcc-ccccCCcccceEeccCCccccc-CcccccCCCCcEEeccccccccccch-hhhccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLP-EEMVKLVNLKYLRLTNAHIDVI-PSCIAKLQRLQTLDISGNMAFMELPR-EICELK 637 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~n~~~~~lp~-~~~~l~ 637 (858)
-.++|+.|. ++ .+| ..|+.+++||.|||++|.|+.| |..|..+.+|..|-+.+|+.+..+|. .|+.|.
T Consensus 70 veirLdqN~-------I~--~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~ 140 (498)
T KOG4237|consen 70 VEIRLDQNQ-------IS--SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS 140 (498)
T ss_pred eEEEeccCC-------cc--cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence 456777887 77 777 4588899999999999999887 77888888888887777557777874 577888
Q ss_pred ccccccc-----ccccccCCCCCccccccceeeccccccc--CcccccCCCeeEEeecccc------------cccchhh
Q 037627 638 ELRHLIG-----NFTGTLNIENLSNLQTLKYVERGSWAEI--NPEKLVNLRDLRIISKYQE------------EEFSFKS 698 (858)
Q Consensus 638 ~L~~L~~-----~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~------------~~~~~~~ 698 (858)
.|+-|.. .......+..+++|..|.+.+|....+. .+..+..++.+.+..|... ...+ ..
T Consensus 141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~-ie 219 (498)
T KOG4237|consen 141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNP-IE 219 (498)
T ss_pred HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhch-hh
Confidence 8887732 1223335777888888888777643322 2445555555555444310 0011 11
Q ss_pred hhcCCCCCeEEeeccCCccccCCCCCCCCCCccEE--Eecc--c-CCCCChhhhhccCCccEEEEecccCCCCCccccCC
Q 037627 699 IAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDL--RLSG--K-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEK 773 (858)
Q Consensus 699 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L--~l~~--~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 773 (858)
++.........+........ ..-....+++.+ .+++ + ....|...+..+++|+.|+|++|+++..-..+|.+
T Consensus 220 tsgarc~~p~rl~~~Ri~q~---~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~ 296 (498)
T KOG4237|consen 220 TSGARCVSPYRLYYKRINQE---DARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG 296 (498)
T ss_pred cccceecchHHHHHHHhccc---chhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc
Confidence 11111111111111111111 000000011111 1111 1 22344444444666666666666666666666666
Q ss_pred CCCCCeeEeeccccCCceEEECCCCccccceeeecCCCCCCeE-EEccCccccccceeecccc
Q 037627 774 LPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLNDLAQW-QVEDGAMPILRGLRVTNAY 835 (858)
Q Consensus 774 l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~c~ 835 (858)
+..++.|.|..|++.... .....++..|+.|++.+ ++++.+ +..+..+.+|.+|++-.||
T Consensus 297 ~a~l~eL~L~~N~l~~v~-~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 297 AAELQELYLTRNKLEFVS-SGMFQGLSGLKTLSLYD-NQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhhhhhhhcCcchHHHHH-HHhhhccccceeeeecC-CeeEEEecccccccceeeeeehccCc
Confidence 666666666666654211 11123455566666665 233333 2233344555555555444
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.35 E-value=3.3e-14 Score=125.88 Aligned_cols=151 Identities=27% Similarity=0.397 Sum_probs=90.2
Q ss_pred ccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhccccccccccc----cccccCCCCCcccccc
Q 037627 586 MVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGN----FTGTLNIENLSNLQTL 661 (858)
Q Consensus 586 ~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~----~~~~~~~~~l~~L~~L 661 (858)
+.++.+...|.|++|+++.+|+.|..+.+|+.|++++| .+..+|..++.+++|++|+.. ...|.+|+.++.|+.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVL 107 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhh
Confidence 33556667777777777777777777777777777777 666777777777777777321 2345577788888888
Q ss_pred ceeecccccccCcc---cccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc
Q 037627 662 KYVERGSWAEINPE---KLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK 738 (858)
Q Consensus 662 ~l~~~~~~~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 738 (858)
++.+|+......++ .++.|+.|++.+|.. +.+| ..++++++|+.|.+..|.
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp-~dvg~lt~lqil~lrdnd------------------------ 161 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILP-PDVGKLTNLQILSLRDND------------------------ 161 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCc-ccCC-hhhhhhcceeEEeeccCc------------------------
Confidence 88877643332222 234444444444432 2233 344444444444444332
Q ss_pred CCCCChhhhhccCCccEEEEecccCC
Q 037627 739 IEKLPEDLHEVLPNLECLSLKKSHLK 764 (858)
Q Consensus 739 ~~~~p~~~~~~l~~L~~L~L~~n~l~ 764 (858)
+-++|..+.. +..|++|.+.+|.++
T Consensus 162 ll~lpkeig~-lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 162 LLSLPKEIGD-LTRLRELHIQGNRLT 186 (264)
T ss_pred hhhCcHHHHH-HHHHHHHhcccceee
Confidence 3445666666 466667777776664
No 25
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.31 E-value=1.9e-11 Score=124.64 Aligned_cols=196 Identities=20% Similarity=0.204 Sum_probs=102.5
Q ss_pred eeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHH-------
Q 037627 178 VVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRI------- 250 (858)
Q Consensus 178 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i------- 250 (858)
|+||+.|+++|.+.+..+. .+.+.|+|+.|+|||+|++++.+ ..+..-..++|+....... ......+
T Consensus 1 F~gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~~~ 75 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFIN--ELKEKGYKVVYIDFLEESN-ESSLRSFIEETSLA 75 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHH--HCT--EECCCHHCCTTBSH-HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHH--HhhhcCCcEEEEecccchh-hhHHHHHHHHHHHH
Confidence 7999999999999887653 56899999999999999999998 3332222455555444332 2222222
Q ss_pred ---HHhccccccc----------hhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh-----------hHHHHHhhCCC
Q 037627 251 ---IRSFKINVLT----------RELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE-----------TWESLKRAFPD 306 (858)
Q Consensus 251 ---~~~l~~~~~~----------~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-----------~~~~l~~~l~~ 306 (858)
...+....+. ..........+.+.+.+ .+++++||+||++... .+..+......
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~--~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~ 153 (234)
T PF01637_consen 76 DELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKK--KGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS 153 (234)
T ss_dssp CHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHH--CHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH---
T ss_pred HHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHh--cCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc
Confidence 1111111110 00011112222232222 2345999999987544 12222223223
Q ss_pred CCCCcEEEEEeCchhHHhh-------cCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHH
Q 037627 307 NKNGSRVIITTRIKEVAER-------SDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAI 379 (858)
Q Consensus 307 ~~~gs~ilvTtR~~~~~~~-------~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 379 (858)
..+.+ +|+++....+... .......+.+++|+.+++++++....... ..-+.-++..++|+..+||+|..|
T Consensus 154 ~~~~~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l 231 (234)
T PF01637_consen 154 QQNVS-IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYL 231 (234)
T ss_dssp -TTEE-EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHH
T ss_pred cCCce-EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHH
Confidence 33334 4555544444433 11112459999999999999999876544 211123566799999999999988
Q ss_pred HHH
Q 037627 380 VVL 382 (858)
Q Consensus 380 ~~~ 382 (858)
..+
T Consensus 232 ~~~ 234 (234)
T PF01637_consen 232 QEL 234 (234)
T ss_dssp HHH
T ss_pred hcC
Confidence 753
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.29 E-value=4.1e-10 Score=117.26 Aligned_cols=183 Identities=25% Similarity=0.246 Sum_probs=114.5
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNC 278 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 278 (858)
..+++|+|++|+||||+++.++..... ..+ ...|+ +....+..+++..++..++.+..... .......+...+...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~-~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRD-KAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCC-HHHHHHHHHHHHHHH
Confidence 458999999999999999999984321 111 12233 33345777888899888876532110 001112333333333
Q ss_pred -hcCceEEEEEEcCCChh--hHHHHHhhCCC---CCCCcEEEEEeCchhHHhhcC---------CCCceeecCCCChhHH
Q 037627 279 -LQGKSYLVVVDDAWQKE--TWESLKRAFPD---NKNGSRVIITTRIKEVAERSD---------ENAYAHKLRFLRSDES 343 (858)
Q Consensus 279 -l~~~~~LlvlDd~~~~~--~~~~l~~~l~~---~~~gs~ilvTtR~~~~~~~~~---------~~~~~~~l~~L~~~e~ 343 (858)
..+++.+||+||++... .++.+...... ......|++|.... ...... .....+.+++++.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 36788999999998753 45554432221 12233456666543 221111 1114678999999999
Q ss_pred HHHHHHHhcCCCC--CChhHHHHHHHHHHHcCCChHHHHHHHhHh
Q 037627 344 WELFCEKAFRKSN--GSEGLEKLGREMVEKCRGLPLAIVVLGGLL 386 (858)
Q Consensus 344 ~~l~~~~~~~~~~--~~~~~~~~~~~I~~~~~G~Plai~~~~~~l 386 (858)
.+++...+..... ...-.++..+.|++.++|+|..|..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999887654332 122335788999999999999999998876
No 27
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.25 E-value=7.9e-11 Score=124.90 Aligned_cols=277 Identities=16% Similarity=0.123 Sum_probs=148.3
Q ss_pred CceeeccccHHHHHHHHhcC---CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHH
Q 037627 176 GNVVGFDDDVSKLLAKLLNK---EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIR 252 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 252 (858)
.+|||++..++++..++... ......+.|+|++|+|||+||+.+++. ....+ ..+......... .+...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~~~-~l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEKPG-DLAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcCch-hHHHHHH
Confidence 46999999999998888632 233557889999999999999999983 33222 112211111111 1222222
Q ss_pred hcccccc--chhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChhhHHHHHhhCCCCCCCcEEEEEeCchhHHhhcCC-C
Q 037627 253 SFKINVL--TRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKETWESLKRAFPDNKNGSRVIITTRIKEVAERSDE-N 329 (858)
Q Consensus 253 ~l~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~~~~~~~~-~ 329 (858)
.+..... -++.+..+. ...+.+...+.+.+..+|+|+..+...+.. ...+.+-|..||+...+...... .
T Consensus 78 ~~~~~~vl~iDEi~~l~~-~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~------~~~~~~li~~t~~~~~l~~~l~sR~ 150 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLSP-AVEELLYPAMEDFRLDIVIGKGPSARSVRL------DLPPFTLVGATTRAGMLTSPLRDRF 150 (305)
T ss_pred hcccCCEEEEehHhhhCH-HHHHHhhHHHhhhheeeeeccCccccceee------cCCCeEEEEecCCccccCHHHHhhc
Confidence 2221110 011111111 112223333334444444444433322111 11224445566776433332111 1
Q ss_pred CceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhHhcCCChHHHHHHHHHHHhh-hh-c
Q 037627 330 AYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVLGGLLSMKKPQEWRRVRDHLWQH-LK-N 407 (858)
Q Consensus 330 ~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~~~~~w~~~~~~l~~~-~~-~ 407 (858)
...+.+++++.+|..+++.+.+...... ..++....|++.|+|.|..+..++..+. ... ...... .. .
T Consensus 151 ~~~~~l~~l~~~e~~~il~~~~~~~~~~--~~~~al~~ia~~~~G~pR~~~~ll~~~~-------~~a-~~~~~~~it~~ 220 (305)
T TIGR00635 151 GIILRLEFYTVEELAEIVSRSAGLLNVE--IEPEAALEIARRSRGTPRIANRLLRRVR-------DFA-QVRGQKIINRD 220 (305)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHhCCCcchHHHHHHHHH-------HHH-HHcCCCCcCHH
Confidence 1467999999999999999887644332 2256778999999999977665554331 000 000000 00 0
Q ss_pred CccchhhHHHhhhccCcHHHHHHHh-HhcCCCCCceeCHHHHHHHHHHcCccccCCCCCHHHHHHHHHH-HHHhcccccc
Q 037627 408 DCIHISSLLNLSFRNLSHELKLCFL-YLGLFPEDFEINVQTLIRLLVAEGFIQQDTDRSTEEVAGEILD-ELINRSLIQI 485 (858)
Q Consensus 408 ~~~~i~~~l~~s~~~L~~~~k~~f~-~la~fp~~~~i~~~~l~~~w~aeg~i~~~~~~~~~~~~~~~l~-~L~~~~ll~~ 485 (858)
........+...|..+++..+..+. .++.+..+ ++..+.+.... ......++..++ .|++++||+.
T Consensus 221 ~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l-----------g~~~~~~~~~~e~~Li~~~li~~ 288 (305)
T TIGR00635 221 IALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL-----------GEDADTIEDVYEPYLLQIGFLQR 288 (305)
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh-----------CCCcchHHHhhhHHHHHcCCccc
Confidence 0011122256678899998888777 44666544 45555555443 122344667788 6999999974
Q ss_pred cc
Q 037627 486 DK 487 (858)
Q Consensus 486 ~~ 487 (858)
..
T Consensus 289 ~~ 290 (305)
T TIGR00635 289 TP 290 (305)
T ss_pred CC
Confidence 33
No 28
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.24 E-value=1.5e-10 Score=123.43 Aligned_cols=279 Identities=15% Similarity=0.136 Sum_probs=148.7
Q ss_pred CCceeeccccHHHHHHHHhc---CCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHH
Q 037627 175 EGNVVGFDDDVSKLLAKLLN---KEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRII 251 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 251 (858)
-.+|+|++..++.+...+.. .....+.+.|+|++|+|||+||+.+++. ....+ .++... .......+..++
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cccChHHHHHHH
Confidence 35799999999998887753 2334568899999999999999999983 33222 122211 111111222222
Q ss_pred Hhcccccc--chhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChhhHHHHHhhCCCCCCCcEEEEEeCchhHHhhcCC-
Q 037627 252 RSFKINVL--TRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKETWESLKRAFPDNKNGSRVIITTRIKEVAERSDE- 328 (858)
Q Consensus 252 ~~l~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~~~~~~~~- 328 (858)
..+..... -++.+..+ ....+.+...+.+.+..+++|+..+...+. ..+ .+.+-|..|++...+......
T Consensus 98 ~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~---~~l---~~~~li~at~~~~~l~~~L~sR 170 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIR---LDL---PPFTLIGATTRAGLLTSPLRDR 170 (328)
T ss_pred HhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCcccccee---ecC---CCceEEeecCCcccCCHHHHHh
Confidence 22211100 00000000 001111222222333333333322211100 001 123445556665433322111
Q ss_pred CCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhHhcCCChHHHHHHHHHHHhhhhc-
Q 037627 329 NAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVLGGLLSMKKPQEWRRVRDHLWQHLKN- 407 (858)
Q Consensus 329 ~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~~~~~w~~~~~~l~~~~~~- 407 (858)
....+.+++++.++..+++.+.+....... .++.+..|++.|+|.|..+..+...+. .|..... ......
T Consensus 171 f~~~~~l~~~~~~e~~~il~~~~~~~~~~~--~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~~--~~~I~~~ 241 (328)
T PRK00080 171 FGIVQRLEFYTVEELEKIVKRSARILGVEI--DEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVKG--DGVITKE 241 (328)
T ss_pred cCeeeecCCCCHHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHcC--CCCCCHH
Confidence 115689999999999999998876544332 256789999999999976655554331 1110000 000000
Q ss_pred CccchhhHHHhhhccCcHHHHHHHh-HhcCCCCCceeCHHHHHHHHHHcCccccCCCCCHHHHHHHHHH-HHHhcccccc
Q 037627 408 DCIHISSLLNLSFRNLSHELKLCFL-YLGLFPEDFEINVQTLIRLLVAEGFIQQDTDRSTEEVAGEILD-ELINRSLIQI 485 (858)
Q Consensus 408 ~~~~i~~~l~~s~~~L~~~~k~~f~-~la~fp~~~~i~~~~l~~~w~aeg~i~~~~~~~~~~~~~~~l~-~L~~~~ll~~ 485 (858)
........+...+..|++..+..+. ....|+.+ ++..+.+...+ ....+.+++.++ .|++.+||+.
T Consensus 242 ~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l-----------g~~~~~~~~~~e~~Li~~~li~~ 309 (328)
T PRK00080 242 IADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL-----------GEERDTIEDVYEPYLIQQGFIQR 309 (328)
T ss_pred HHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH-----------CCCcchHHHHhhHHHHHcCCccc
Confidence 0012233456678889988888886 66677766 56666665444 122334566677 8999999975
Q ss_pred cc
Q 037627 486 DK 487 (858)
Q Consensus 486 ~~ 487 (858)
..
T Consensus 310 ~~ 311 (328)
T PRK00080 310 TP 311 (328)
T ss_pred CC
Confidence 43
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.23 E-value=3.2e-13 Score=144.99 Aligned_cols=250 Identities=21% Similarity=0.196 Sum_probs=133.8
Q ss_pred eeccCCccccccccCCCCCccccccCCcccceEeccCCccc-----ccCcccccCCCCcEEeccccccccccchhhhccc
Q 037627 563 LNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHID-----VIPSCIAKLQRLQTLDISGNMAFMELPREICELK 637 (858)
Q Consensus 563 L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~-----~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~ 637 (858)
|+|.++. ++....+..+..+.+|++|+++++.++ .++..+...++|++|+++++.. +..+..+..+
T Consensus 3 l~L~~~~-------l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~-~~~~~~~~~~- 73 (319)
T cd00116 3 LSLKGEL-------LKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET-GRIPRGLQSL- 73 (319)
T ss_pred cccccCc-------ccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccccc-CCcchHHHHH-
Confidence 4555555 443355556667777888888888873 4566677777888888888733 3212211100
Q ss_pred cccccccccccccCCCCCccccccceeeccccc--ccCcccc---cCCCeeEEeeccccc----ccchhhhhcC-CCCCe
Q 037627 638 ELRHLIGNFTGTLNIENLSNLQTLKYVERGSWA--EINPEKL---VNLRDLRIISKYQEE----EFSFKSIAYL-KNLQL 707 (858)
Q Consensus 638 ~L~~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~l---~~L~~L~l~~~~~~~----~~~~~~l~~l-~~L~~ 707 (858)
+..+..+++|+.|++++|.... ...+..+ ++|++|++++|.... .+. ..+..+ ++|+.
T Consensus 74 -----------~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~-~~l~~~~~~L~~ 141 (319)
T cd00116 74 -----------LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA-KGLKDLPPALEK 141 (319)
T ss_pred -----------HHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHH-HHHHhCCCCceE
Confidence 0112334455555555554321 1111222 336666666665331 111 344455 67777
Q ss_pred EEeeccCCcccc---CCCCCCCCCCccEEEeccc-CCC-----CChhhhhccCCccEEEEecccCCCCC----ccccCCC
Q 037627 708 LSIRLSDDTCFD---SLQPLSDCSYLIDLRLSGK-IEK-----LPEDLHEVLPNLECLSLKKSHLKEDP----MPKLEKL 774 (858)
Q Consensus 708 L~l~~~~~~~~~---~~~~l~~l~~L~~L~l~~~-~~~-----~p~~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~l 774 (858)
|++++|.+.... ....+..+++|++|+++++ +.. ++..+.. +++|+.|+|++|.+++.. ...+..+
T Consensus 142 L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~~~~~ 220 (319)
T cd00116 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKA-NCNLEVLDLNNNGLTDEGASALAETLASL 220 (319)
T ss_pred EEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHh-CCCCCEEeccCCccChHHHHHHHHHhccc
Confidence 777776544210 1112344556777777764 321 2222223 357888888887765332 2345567
Q ss_pred CCCCeeEeeccccCCceEEECCC----CccccceeeecCCCCCCeE-----EEccCccccccceeecccc
Q 037627 775 PNLTILDLGLKSYGGKKMICTTK----GFHLLEILQLIDLNDLAQW-----QVEDGAMPILRGLRVTNAY 835 (858)
Q Consensus 775 ~~L~~L~L~~n~~~~~~~~~~~~----~~~~L~~L~l~~~~~l~~~-----~~~~~~l~~L~~L~l~~c~ 835 (858)
++|+.|++++|.+++..+..... ..+.|+.|++.+|. ++.. ......+++|+.+++++|.
T Consensus 221 ~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 77888888877766422111011 23677888877653 3211 1112244678888888774
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.23 E-value=8.4e-13 Score=132.60 Aligned_cols=246 Identities=17% Similarity=0.161 Sum_probs=177.3
Q ss_pred cCCCeeEEEEEecccCCCCCCCCCCCCccccccCCeeeeccCCccccccccCCCCCc-cccccCCcccceEeccC-Cccc
Q 037627 526 ISSSCRRQAVHFRIMGDWGLGHCNPRSSSLLLFNQRVLNFEGVVSNVLCSVGGCYNL-PEEMVKLVNLKYLRLTN-AHID 603 (858)
Q Consensus 526 ~~~~~r~l~~~~~~~~~~~~~~~~~~lr~l~~~~~r~L~L~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~L~~-n~i~ 603 (858)
.|...-.+.+..+.+..+|. ..+..++.| |.|||++|. +. .| |..|..+++|..|-+-+ |+|+
T Consensus 65 LP~~tveirLdqN~I~~iP~-~aF~~l~~L-----RrLdLS~N~-------Is--~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPP-GAFKTLHRL-----RRLDLSKNN-------IS--FIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred CCCcceEEEeccCCcccCCh-hhccchhhh-----ceecccccc-------hh--hcChHhhhhhHhhhHHHhhcCCchh
Confidence 45566666776666666654 346666666 999999999 65 33 78899999988887665 9999
Q ss_pred ccCcc-cccCCCCcEEeccccccccccchhhhcccccccc---ccccccc--cCCCCCccccccceeeccccccc-----
Q 037627 604 VIPSC-IAKLQRLQTLDISGNMAFMELPREICELKELRHL---IGNFTGT--LNIENLSNLQTLKYVERGSWAEI----- 672 (858)
Q Consensus 604 ~lp~~-l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L---~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~----- 672 (858)
.+|.. |.+|..|+.|.+.-|++.-.....|..|++|..| ++.+... ..+..+.+++.+++..|.....-
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl 209 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWL 209 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchh
Confidence 99865 7889999999999996666667788899998887 3333221 25677778888877766511100
Q ss_pred ---------Ccccc-------------------------cCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccc
Q 037627 673 ---------NPEKL-------------------------VNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCF 718 (858)
Q Consensus 673 ---------~~~~l-------------------------~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 718 (858)
..+.+ ..+..-..+.+......|-..|..+++|+.|++++|.++.+
T Consensus 210 a~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i 289 (498)
T KOG4237|consen 210 ADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRI 289 (498)
T ss_pred hhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchh
Confidence 01110 01110011111122222335678899999999999988877
Q ss_pred cCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeecccc
Q 037627 719 DSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSY 787 (858)
Q Consensus 719 ~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~ 787 (858)
.-.+|.....++.|.|..| +..+...++..+.+|+.|+|.+|+|+...|.+|..+.+|..|+|-.|.+
T Consensus 290 -~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 290 -EDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred -hhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 4567888899999999986 6777777787789999999999999998999999999999999988765
No 31
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.20 E-value=4.1e-13 Score=119.03 Aligned_cols=165 Identities=25% Similarity=0.317 Sum_probs=133.7
Q ss_pred ccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCc
Q 037627 675 EKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNL 753 (858)
Q Consensus 675 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L 753 (858)
-.+++.+.|.+++|..... + ..+..+.+|+.|++++|.++.. +..+++++.|+.|+++-| +..+|..+++ +|-|
T Consensus 30 f~~s~ITrLtLSHNKl~~v-p-pnia~l~nlevln~~nnqie~l--p~~issl~klr~lnvgmnrl~~lprgfgs-~p~l 104 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVV-P-PNIAELKNLEVLNLSNNQIEEL--PTSISSLPKLRILNVGMNRLNILPRGFGS-FPAL 104 (264)
T ss_pred cchhhhhhhhcccCceeec-C-CcHHHhhhhhhhhcccchhhhc--ChhhhhchhhhheecchhhhhcCccccCC-Cchh
Confidence 3567778888888875544 4 5788999999999998887754 356788899999999876 6678999888 6999
Q ss_pred cEEEEecccCCC-CCccccCCCCCCCeeEeeccccCCceEEECCCCccccceeeecCCCCCCeEEEccCccccccceeec
Q 037627 754 ECLSLKKSHLKE-DPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLNDLAQWQVEDGAMPILRGLRVT 832 (858)
Q Consensus 754 ~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~ 832 (858)
+.|+|++|++.. ..|..|..+..|+.|+|++|.+.- ++...+.+.+|+.|.+.+ +++-++|.+.+.+..|+.|+|.
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~--lp~dvg~lt~lqil~lrd-ndll~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI--LPPDVGKLTNLQILSLRD-NDLLSLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCccc--CChhhhhhcceeEEeecc-CchhhCcHHHHHHHHHHHHhcc
Confidence 999999998864 467778889999999999998753 345567788888888887 5677788888999999999999
Q ss_pred ccccCC-CCcccCCCCC
Q 037627 833 NAYKLK-IPERLKSIPL 848 (858)
Q Consensus 833 ~c~~L~-lp~~l~~L~~ 848 (858)
+| .++ +|+.+.+|.-
T Consensus 182 gn-rl~vlppel~~l~l 197 (264)
T KOG0617|consen 182 GN-RLTVLPPELANLDL 197 (264)
T ss_pred cc-eeeecChhhhhhhh
Confidence 98 688 9988776654
No 32
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.11 E-value=2.4e-09 Score=126.49 Aligned_cols=315 Identities=16% Similarity=0.151 Sum_probs=180.8
Q ss_pred ceeeccccHHHHHHHHhcC-CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEE---EeCCCC---CHHHHHHH
Q 037627 177 NVVGFDDDVSKLLAKLLNK-EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWV---SVSQDY---DTKDLLLR 249 (858)
Q Consensus 177 ~~vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv---~~~~~~---~~~~~~~~ 249 (858)
.++||+.|++.|...+... .+...++.|.|.+|||||+|+++|.. .+.+.+...+-- ...... .....+++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 3789999999999998765 45677999999999999999999987 333332111111 111211 12233444
Q ss_pred HHHhcccccc-------------------------------------chhhhhccHH-----HHHHHHHHHh-cCceEEE
Q 037627 250 IIRSFKINVL-------------------------------------TRELEEMREE-----DLERYLHNCL-QGKSYLV 286 (858)
Q Consensus 250 i~~~l~~~~~-------------------------------------~~~~~~~~~~-----~~~~~l~~~l-~~~~~Ll 286 (858)
++.++..... ..+....... .....+.... +.++.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 4444311110 0000000001 1112222222 4569999
Q ss_pred EEEcCC-Chh-h---HHHHHhhCC--CC-CCCcEEEEEeCch-hHHhhcCCCCceeecCCCChhHHHHHHHHHhcCCCCC
Q 037627 287 VVDDAW-QKE-T---WESLKRAFP--DN-KNGSRVIITTRIK-EVAERSDENAYAHKLRFLRSDESWELFCEKAFRKSNG 357 (858)
Q Consensus 287 vlDd~~-~~~-~---~~~l~~~l~--~~-~~gs~ilvTtR~~-~~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~ 357 (858)
|+||++ .+. . ++.+..... .. ....-.+.|.+.. ............+.|.||+..+...+..........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~- 237 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL- 237 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc-
Confidence 999994 332 2 222222222 00 0011122333333 222222333378999999999999999887755332
Q ss_pred ChhHHHHHHHHHHHcCCChHHHHHHHhHhcCC-------ChHHHHHHHHHHHhhhhcCccchhhHHHhhhccCcHHHHHH
Q 037627 358 SEGLEKLGREMVEKCRGLPLAIVVLGGLLSMK-------KPQEWRRVRDHLWQHLKNDCIHISSLLNLSFRNLSHELKLC 430 (858)
Q Consensus 358 ~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~-------~~~~w~~~~~~l~~~~~~~~~~i~~~l~~s~~~L~~~~k~~ 430 (858)
...+....|+++..|+|+.+..+-..+... +...|..-...+... ...+.+.+.+..-.+.||...|..
T Consensus 238 --~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~--~~~~~vv~~l~~rl~kL~~~t~~V 313 (849)
T COG3899 238 --LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGIL--ATTDAVVEFLAARLQKLPGTTREV 313 (849)
T ss_pred --ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCc--hhhHHHHHHHHHHHhcCCHHHHHH
Confidence 224567889999999999999999888653 233443322211110 111235556888999999999999
Q ss_pred HhHhcCCCCCceeCHHHHHHHHHHcCccccCCCCCHHHHHHHHHHHHHhcccccccc----cCCCcEeEE-EEcHhHHHH
Q 037627 431 FLYLGLFPEDFEINVQTLIRLLVAEGFIQQDTDRSTEEVAGEILDELINRSLIQIDK----RCWGRIATC-RVHDLLRDL 505 (858)
Q Consensus 431 f~~la~fp~~~~i~~~~l~~~w~aeg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~----~~~~~~~~~-~~H~lir~~ 505 (858)
+...|++-.. |+.+.|...+- ......+...++.|....++...+ ........| -.|+.+++.
T Consensus 314 l~~AA~iG~~--F~l~~La~l~~----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqa 381 (849)
T COG3899 314 LKAAACIGNR--FDLDTLAALAE----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQA 381 (849)
T ss_pred HHHHHHhCcc--CCHHHHHHHHh----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHH
Confidence 9999999655 55666665551 134556666666666665554221 111111111 359999999
Q ss_pred HHHHh
Q 037627 506 AIEQA 510 (858)
Q Consensus 506 ~~~~~ 510 (858)
+....
T Consensus 382 aY~~i 386 (849)
T COG3899 382 AYNLI 386 (849)
T ss_pred HhccC
Confidence 86543
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.10 E-value=1e-11 Score=133.25 Aligned_cols=249 Identities=22% Similarity=0.136 Sum_probs=129.2
Q ss_pred eeeeccCCccccccccCCC---CCccccccCCcccceEeccCCcccc-------cCcccccCCCCcEEeccccccccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGC---YNLPEEMVKLVNLKYLRLTNAHIDV-------IPSCIAKLQRLQTLDISGNMAFMELP 630 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~---~~lp~~~~~l~~L~~L~L~~n~i~~-------lp~~l~~l~~L~~L~L~~n~~~~~lp 630 (858)
++|+++++. ++. ..++..+...++|++|+++++.+.. ++..+.++++|+.|++++|.+....+
T Consensus 26 ~~l~l~~~~-------l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 26 QVLRLEGNT-------LGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred cEEeecCCC-------CcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 788888887 521 1456667788889999999887663 34556778899999999996655555
Q ss_pred hhhhccccccccccccccccCCCCCccccccceeeccccc------ccCcccc-cCCCeeEEeeccccc----ccchhhh
Q 037627 631 REICELKELRHLIGNFTGTLNIENLSNLQTLKYVERGSWA------EINPEKL-VNLRDLRIISKYQEE----EFSFKSI 699 (858)
Q Consensus 631 ~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~------~~~~~~l-~~L~~L~l~~~~~~~----~~~~~~l 699 (858)
..+..+.+ . ++|+.|++++|.... ...+..+ ++|+.|++.+|.... ... ..+
T Consensus 99 ~~~~~l~~---------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~ 161 (319)
T cd00116 99 GVLESLLR---------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA-KAL 161 (319)
T ss_pred HHHHHHhc---------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH-HHH
Confidence 55554443 1 334444444444221 0012233 455566665555331 111 344
Q ss_pred hcCCCCCeEEeeccCCcccc---CCCCCCCCCCccEEEeccc-CCC-----CChhhhhccCCccEEEEecccCCCCCccc
Q 037627 700 AYLKNLQLLSIRLSDDTCFD---SLQPLSDCSYLIDLRLSGK-IEK-----LPEDLHEVLPNLECLSLKKSHLKEDPMPK 770 (858)
Q Consensus 700 ~~l~~L~~L~l~~~~~~~~~---~~~~l~~l~~L~~L~l~~~-~~~-----~p~~~~~~l~~L~~L~L~~n~l~~~~~~~ 770 (858)
..+++|+.|++++|...... ....+..+++|+.|+++++ +.. ++..+.. +++|+.|++++|.+++..+..
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~-~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLAS-LKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcc-cCCCCEEecCCCcCchHHHHH
Confidence 45556666666655443210 0011233456666666654 221 1222222 466677777766665422222
Q ss_pred cC-----CCCCCCeeEeeccccCCceE---EECCCCccccceeeecCCCCCCeEEE-----ccCcc-ccccceeecccc
Q 037627 771 LE-----KLPNLTILDLGLKSYGGKKM---ICTTKGFHLLEILQLIDLNDLAQWQV-----EDGAM-PILRGLRVTNAY 835 (858)
Q Consensus 771 l~-----~l~~L~~L~L~~n~~~~~~~---~~~~~~~~~L~~L~l~~~~~l~~~~~-----~~~~l-~~L~~L~l~~c~ 835 (858)
+. ..+.|+.|++++|.++.... ......+++|++|+++++. +..... ....+ +.|+.|++.+++
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK-FGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC-CcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 21 13566777776666642211 0111234566666666532 332210 11123 567777766654
No 34
>PF05729 NACHT: NACHT domain
Probab=99.06 E-value=1.3e-09 Score=104.44 Aligned_cols=143 Identities=22% Similarity=0.235 Sum_probs=87.1
Q ss_pred EEEEEEecCcchHHHHHHHHhcCccccCC----cceEEEEEeCCCCCHH---HHHHHHHHhccccccchhhhhccHHHHH
Q 037627 200 FVISVYGMGGLGKTTLARKLYHNNDVKNK----FDRCAWVSVSQDYDTK---DLLLRIIRSFKINVLTRELEEMREEDLE 272 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 272 (858)
|++.|+|.+|+||||+++.++.+...... +..++|+......... .+...+......... ......
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-------~~~~~~ 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA-------PIEELL 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh-------hhHHHH
Confidence 58999999999999999999874322222 3456677665543322 233333333322111 011111
Q ss_pred HHHHHHhcCceEEEEEEcCCChhh---------HHHHH-hhCCC-CCCCcEEEEEeCchhHHh--hcCCCCceeecCCCC
Q 037627 273 RYLHNCLQGKSYLVVVDDAWQKET---------WESLK-RAFPD-NKNGSRVIITTRIKEVAE--RSDENAYAHKLRFLR 339 (858)
Q Consensus 273 ~~l~~~l~~~~~LlvlDd~~~~~~---------~~~l~-~~l~~-~~~gs~ilvTtR~~~~~~--~~~~~~~~~~l~~L~ 339 (858)
..+ ....++++||+|++++... +..+. ..+.. ..++.+++||+|...... ........+.+.+|+
T Consensus 74 ~~~--~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 74 QEL--LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred HHH--HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 111 1257899999999986532 22233 23332 356899999999886622 222222579999999
Q ss_pred hhHHHHHHHHHh
Q 037627 340 SDESWELFCEKA 351 (858)
Q Consensus 340 ~~e~~~l~~~~~ 351 (858)
+++..+++.+..
T Consensus 152 ~~~~~~~~~~~f 163 (166)
T PF05729_consen 152 EEDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHHh
Confidence 999999997764
No 35
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.98 E-value=8.5e-08 Score=107.81 Aligned_cols=299 Identities=14% Similarity=0.139 Sum_probs=162.4
Q ss_pred CcCCceeeccccHHHHHHHHhcC---CCCcEEEEEEecCcchHHHHHHHHhcCccc---cCCc--ceEEEEEeCCCCCHH
Q 037627 173 SIEGNVVGFDDDVSKLLAKLLNK---EPRRFVISVYGMGGLGKTTLARKLYHNNDV---KNKF--DRCAWVSVSQDYDTK 244 (858)
Q Consensus 173 ~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~---~~~f--~~~~wv~~~~~~~~~ 244 (858)
..|+.+.||++|+++|...|... .....++.|+|++|+|||+.++.+...... +... -.+++|++....++.
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 44678999999999999888643 333467889999999999999999874211 1111 136778877777888
Q ss_pred HHHHHHHHhccccccchhhhhccHHHHHHHHHHHh-c--CceEEEEEEcCCChh--hHHHHHhhCCC-CCCCcEEEE--E
Q 037627 245 DLLLRIIRSFKINVLTRELEEMREEDLERYLHNCL-Q--GKSYLVVVDDAWQKE--TWESLKRAFPD-NKNGSRVII--T 316 (858)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~--~~~~LlvlDd~~~~~--~~~~l~~~l~~-~~~gs~ilv--T 316 (858)
.++..|+.++....++. ..........+...+ . ....+||||+++... .-+.|...+.+ ...+++|+| +
T Consensus 832 sIYqvI~qqL~g~~P~~---GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGI 908 (1164)
T PTZ00112 832 AAYQVLYKQLFNKKPPN---ALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAI 908 (1164)
T ss_pred HHHHHHHHHHcCCCCCc---cccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEe
Confidence 88999998885443311 122233444444443 1 234699999998542 11122222221 123455544 3
Q ss_pred eCchhHH----hhcCC--CCceeecCCCChhHHHHHHHHHhcCCCCC--ChhHHHHHHHHHHHcCCChHHHHHHHhHhcC
Q 037627 317 TRIKEVA----ERSDE--NAYAHKLRFLRSDESWELFCEKAFRKSNG--SEGLEKLGREMVEKCRGLPLAIVVLGGLLSM 388 (858)
Q Consensus 317 tR~~~~~----~~~~~--~~~~~~l~~L~~~e~~~l~~~~~~~~~~~--~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~ 388 (858)
|..-... ..... ....+...|.+.++..+++..++...... +..++-+|+.++...|-.=.||.++-.+...
T Consensus 909 SNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEi 988 (1164)
T PTZ00112 909 SNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFEN 988 (1164)
T ss_pred cCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhh
Confidence 3321111 11111 11347789999999999999988643211 2223333333333334444555555444322
Q ss_pred C-----ChHHHHHHHHHHHhhhhcCccchhhHHHhhhccCcHHHHHHHhHhcCCC---CCceeCHHHHHHHH--HHc--C
Q 037627 389 K-----KPQEWRRVRDHLWQHLKNDCIHISSLLNLSFRNLSHELKLCFLYLGLFP---EDFEINVQTLIRLL--VAE--G 456 (858)
Q Consensus 389 ~-----~~~~w~~~~~~l~~~~~~~~~~i~~~l~~s~~~L~~~~k~~f~~la~fp---~~~~i~~~~l~~~w--~ae--g 456 (858)
. ..+....+.+.+. ...+.-....||.+.|..+..+...- ....++...+.... +++ |
T Consensus 989 kegskVT~eHVrkAleeiE----------~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~G 1058 (1164)
T PTZ00112 989 KRGQKIVPRDITEATNQLF----------DSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSG 1058 (1164)
T ss_pred cCCCccCHHHHHHHHHHHH----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhh
Confidence 1 1222222222211 12234456789998887766544321 12245555554432 111 1
Q ss_pred -ccccCCCCCHHHHHHHHHHHHHhcccccccc
Q 037627 457 -FIQQDTDRSTEEVAGEILDELINRSLIQIDK 487 (858)
Q Consensus 457 -~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~ 487 (858)
.+. .....+...+++.+|...|+|-..+
T Consensus 1059 k~iG---v~plTqRV~d~L~eL~~LGIIl~ep 1087 (1164)
T PTZ00112 1059 KYIG---MCSNNELFKIMLDKLVKMGILLIRP 1087 (1164)
T ss_pred hhcC---CCCcHHHHHHHHHHHHhcCeEEecC
Confidence 111 1111125677888888888876544
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.3e-10 Score=118.82 Aligned_cols=37 Identities=24% Similarity=0.303 Sum_probs=20.1
Q ss_pred cCCcccceEeccCCcccccCc--ccccCCCCcEEecccc
Q 037627 587 VKLVNLKYLRLTNAHIDVIPS--CIAKLQRLQTLDISGN 623 (858)
Q Consensus 587 ~~l~~L~~L~L~~n~i~~lp~--~l~~l~~L~~L~L~~n 623 (858)
.++..|+...|.++.+...+. ....|++++.|||+.|
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N 156 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN 156 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh
Confidence 345555555565555554442 3445556666666655
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.94 E-value=2.7e-10 Score=110.49 Aligned_cols=128 Identities=21% Similarity=0.234 Sum_probs=90.2
Q ss_pred cccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCcc
Q 037627 676 KLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLE 754 (858)
Q Consensus 676 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~ 754 (858)
....|+.|++++|.+.. +. .+..-.|.++.|+++.|++..+ ..+..+++|+.|+|++| +..+..|-.. +.|++
T Consensus 282 TWq~LtelDLS~N~I~~-iD-ESvKL~Pkir~L~lS~N~i~~v---~nLa~L~~L~~LDLS~N~Ls~~~Gwh~K-LGNIK 355 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQ-ID-ESVKLAPKLRRLILSQNRIRTV---QNLAELPQLQLLDLSGNLLAECVGWHLK-LGNIK 355 (490)
T ss_pred hHhhhhhccccccchhh-hh-hhhhhccceeEEeccccceeee---hhhhhcccceEeecccchhHhhhhhHhh-hcCEe
Confidence 34556677777765433 23 5666778888888888876644 44677788888888887 5556666555 68888
Q ss_pred EEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECCCCccccceeeecCCC
Q 037627 755 CLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLN 811 (858)
Q Consensus 755 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~ 811 (858)
.|.|++|.+. ..+.++.+-+|..||+++|++....-.-..+.+|+|+.|.+.+++
T Consensus 356 tL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 356 TLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred eeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 8888888873 345677788888888888888655444556677777777777654
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.88 E-value=6.5e-10 Score=130.66 Aligned_cols=252 Identities=25% Similarity=0.234 Sum_probs=149.1
Q ss_pred ccCCcccceEeccCCc-ccccCcccccCCCCcEEeccccccccccchhhhccccccccccccccc-----cCCCCCcccc
Q 037627 586 MVKLVNLKYLRLTNAH-IDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGNFTGT-----LNIENLSNLQ 659 (858)
Q Consensus 586 ~~~l~~L~~L~L~~n~-i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~~~~-----~~~~~l~~L~ 659 (858)
|..++.|++|||++|. +..+|.+|++|-+|++|+++++ .+..+|.++.+|.+|.+|+...+.. .....|++|+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 6778899999998654 6788988988999999999888 6778888888888888885443221 2334488888
Q ss_pred ccceeecc-cccccCcccccCCCeeEEeecccccccchhhhhcCCCCCe----EEeeccCCccccCCCCCCCCCCccEEE
Q 037627 660 TLKYVERG-SWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQL----LSIRLSDDTCFDSLQPLSDCSYLIDLR 734 (858)
Q Consensus 660 ~L~l~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~----L~l~~~~~~~~~~~~~l~~l~~L~~L~ 734 (858)
+|.+.... ......+..+.+|++|....+..........+..+++|.+ +.+..+. .......+..+.+|+.|.
T Consensus 646 ~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~--~~~~~~~~~~l~~L~~L~ 723 (889)
T KOG4658|consen 646 VLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCS--KRTLISSLGSLGNLEELS 723 (889)
T ss_pred EEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccc--cceeecccccccCcceEE
Confidence 88876654 2222223333333333333322111110022333333332 2222111 111344566777888888
Q ss_pred eccc-CCCCC-hh----hhh-ccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEEC---------CCC
Q 037627 735 LSGK-IEKLP-ED----LHE-VLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICT---------TKG 798 (858)
Q Consensus 735 l~~~-~~~~p-~~----~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~---------~~~ 798 (858)
+.+. +.+.. .+ ... .++++..+...+|... ..+.+....|+|+.|.+..+......++.. ...
T Consensus 724 i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~ 802 (889)
T KOG4658|consen 724 ILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILP 802 (889)
T ss_pred EEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEec
Confidence 8774 22111 11 111 1345666666666532 234444567999999999876543321100 123
Q ss_pred cccccee-eecCCCCCCeEEEccCccccccceeecccccCC-CCc
Q 037627 799 FHLLEIL-QLIDLNDLAQWQVEDGAMPILRGLRVTNAYKLK-IPE 841 (858)
Q Consensus 799 ~~~L~~L-~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~L~-lp~ 841 (858)
|.++..+ .+.+...+..+....-.++.|+.+.+..||++. +|.
T Consensus 803 f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 803 FNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPL 847 (889)
T ss_pred ccccccceeeecCCCCceeEecccCccchhheehhcCcccccCcc
Confidence 5566666 466667777776666677889999999999998 775
No 39
>PRK06893 DNA replication initiation factor; Validated
Probab=98.86 E-value=3e-08 Score=99.49 Aligned_cols=152 Identities=14% Similarity=0.197 Sum_probs=94.3
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNC 278 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 278 (858)
.+.+.|+|++|+|||+|++.+++. .......+.|+++.... ... .. +.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~~---~~~---------------------~~----~~~~ 88 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKSQ---YFS---------------------PA----VLEN 88 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHhh---hhh---------------------HH----HHhh
Confidence 467899999999999999999984 32223356777663110 000 00 1111
Q ss_pred hcCceEEEEEEcCCCh---hhHH-HHHhhCCCC-CCCcEEE-EEeCc---------hhHHhhcCCCCceeecCCCChhHH
Q 037627 279 LQGKSYLVVVDDAWQK---ETWE-SLKRAFPDN-KNGSRVI-ITTRI---------KEVAERSDENAYAHKLRFLRSDES 343 (858)
Q Consensus 279 l~~~~~LlvlDd~~~~---~~~~-~l~~~l~~~-~~gs~il-vTtR~---------~~~~~~~~~~~~~~~l~~L~~~e~ 343 (858)
+. +.-+|++||+|.. ..|+ .+...+... ..|..+| +|+.. +.+...+..+ ..++++++++++.
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g-~~~~l~~pd~e~~ 166 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWG-EIYQLNDLTDEQK 166 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcC-CeeeCCCCCHHHH
Confidence 21 2348999999863 3454 333333322 2344554 45543 2333433333 6789999999999
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHHHh
Q 037627 344 WELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVLGG 384 (858)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~ 384 (858)
++++.+.+.......+ +++..-|++++.|..-.+..+-.
T Consensus 167 ~~iL~~~a~~~~l~l~--~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 167 IIVLQRNAYQRGIELS--DEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHHHHHHHcCCCCC--HHHHHHHHHhccCCHHHHHHHHH
Confidence 9999998875543333 56778899999988876665544
No 40
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.86 E-value=7.9e-08 Score=98.45 Aligned_cols=172 Identities=20% Similarity=0.198 Sum_probs=106.3
Q ss_pred CCcCCceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHH
Q 037627 172 FSIEGNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRII 251 (858)
Q Consensus 172 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 251 (858)
+....+++|-...+.++++ .+......+||++|+||||||+.++. .....|. .++...+...-++.++
T Consensus 26 ~vGQ~HLlg~~~~lrr~v~-----~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~-----~~sAv~~gvkdlr~i~ 93 (436)
T COG2256 26 VVGQEHLLGEGKPLRRAVE-----AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAFE-----ALSAVTSGVKDLREII 93 (436)
T ss_pred hcChHhhhCCCchHHHHHh-----cCCCceeEEECCCCCCHHHHHHHHHH--hhCCceE-----EeccccccHHHHHHHH
Confidence 3445667777766666554 23467788999999999999999998 4555542 2332222222222222
Q ss_pred HhccccccchhhhhccHHHHHHHH-HHHhcCceEEEEEEcCCChh--hHHHHHhhCCCCCCCcEEEE--EeCchhH--Hh
Q 037627 252 RSFKINVLTRELEEMREEDLERYL-HNCLQGKSYLVVVDDAWQKE--TWESLKRAFPDNKNGSRVII--TTRIKEV--AE 324 (858)
Q Consensus 252 ~~l~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~LlvlDd~~~~~--~~~~l~~~l~~~~~gs~ilv--TtR~~~~--~~ 324 (858)
+.- .....+++.+|++|+|+.-. +-+.|+.. -..|.-|+| ||-++.. -.
T Consensus 94 ---------------------e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~---vE~G~iilIGATTENPsF~ln~ 149 (436)
T COG2256 94 ---------------------EEARKNRLLGRRTILFLDEIHRFNKAQQDALLPH---VENGTIILIGATTENPSFELNP 149 (436)
T ss_pred ---------------------HHHHHHHhcCCceEEEEehhhhcChhhhhhhhhh---hcCCeEEEEeccCCCCCeeecH
Confidence 222 22235889999999998553 33444433 345776666 6666632 22
Q ss_pred hcCCCCceeecCCCChhHHHHHHHHHhcCCCCCC----h-hHHHHHHHHHHHcCCChHHH
Q 037627 325 RSDENAYAHKLRFLRSDESWELFCEKAFRKSNGS----E-GLEKLGREMVEKCRGLPLAI 379 (858)
Q Consensus 325 ~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~----~-~~~~~~~~I~~~~~G~Plai 379 (858)
.......++.+++|+.+|...++.+.+......- . ..++....|++.++|--.++
T Consensus 150 ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 150 ALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred HHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 2223337899999999999999988443322211 1 12456677899999887543
No 41
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.81 E-value=2.2e-07 Score=104.19 Aligned_cols=197 Identities=12% Similarity=0.118 Sum_probs=117.5
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
+++||.+..++.|..++..+. -.+.+.++|..|+||||+|+.+++...-...++ +..+......+.|...-.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREIDEGRF 87 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHhcCCC
Confidence 568999999999999887553 345667999999999999998887321111110 011111122222211000
Q ss_pred cccc-chhhhhccHHHHHHHHHHH----hcCceEEEEEEcCCChh--hHHHHHhhCCCCCCCcEEEEEeCchh-HHhhcC
Q 037627 256 INVL-TRELEEMREEDLERYLHNC----LQGKSYLVVVDDAWQKE--TWESLKRAFPDNKNGSRVIITTRIKE-VAERSD 327 (858)
Q Consensus 256 ~~~~-~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~~--~~~~l~~~l~~~~~gs~ilvTtR~~~-~~~~~~ 327 (858)
.... .........+++.+.+... ..++.-++|||+++... .+..++..+.......++|+||.+.. +..-+.
T Consensus 88 ~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIr 167 (830)
T PRK07003 88 VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVL 167 (830)
T ss_pred ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhh
Confidence 0000 0000011222333322221 13455689999999764 57778777766566778888777653 332223
Q ss_pred CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChH-HHHHH
Q 037627 328 ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPL-AIVVL 382 (858)
Q Consensus 328 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~ 382 (858)
.....+.+++++.++..+.+.+.+....... .++....|++.++|... ++.++
T Consensus 168 SRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i--d~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 168 SRCLQFNLKQMPAGHIVSHLERILGEERIAF--EPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred hheEEEecCCcCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 3337899999999999999988775544322 25677889999998764 55543
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=7.7e-10 Score=113.28 Aligned_cols=218 Identities=22% Similarity=0.225 Sum_probs=143.9
Q ss_pred hcccccccc--ccccc---cc-cCCCCCccccccceeeccccccc----CcccccCCCeeEEeecccccccchhhhhcCC
Q 037627 634 CELKELRHL--IGNFT---GT-LNIENLSNLQTLKYVERGSWAEI----NPEKLVNLRDLRIISKYQEEEFSFKSIAYLK 703 (858)
Q Consensus 634 ~~l~~L~~L--~~~~~---~~-~~~~~l~~L~~L~l~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~ 703 (858)
.++.+|+.. ++.-. +. .....|++++.|+++.|-..... ..+.|++|+.|+++.|..........-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 355666655 23221 11 13457999999999998743332 3457899999999988743332212223678
Q ss_pred CCCeEEeeccCCccccCCCCCCCCCCccEEEeccc----CCCCChhhhhccCCccEEEEecccCCCCC-ccccCCCCCCC
Q 037627 704 NLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK----IEKLPEDLHEVLPNLECLSLKKSHLKEDP-MPKLEKLPNLT 778 (858)
Q Consensus 704 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~----~~~~p~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~ 778 (858)
+|+.|.|+.|+++.-.....+..+|+|+.|+|.+| +...+..+ +..|+.|+|++|++.... ....+.+|.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i---~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKI---LQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhh---hhHHhhccccCCcccccccccccccccchh
Confidence 89999999998764433333567889999999987 22334333 578999999999875432 35678899999
Q ss_pred eeEeeccccCCceEEEC-----CCCccccceeeecCCCCCCeEEE--ccCccccccceeecccccCC---------CCcc
Q 037627 779 ILDLGLKSYGGKKMICT-----TKGFHLLEILQLIDLNDLAQWQV--EDGAMPILRGLRVTNAYKLK---------IPER 842 (858)
Q Consensus 779 ~L~L~~n~~~~~~~~~~-----~~~~~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~c~~L~---------lp~~ 842 (858)
.|+++.+.+.+...+.. ...||+|++|++..+ ++.+|+. ....+++|+.|.+..++ +. +-..
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~n~-ln~e~~~a~~~VIAr 352 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITLNY-LNKETDTAKLLVIAR 352 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchhhhhhccccc-ccccccceeEEeeee
Confidence 99999888876433221 357999999999974 4666643 23457888888887765 22 2224
Q ss_pred cCCCCCCceecCCC
Q 037627 843 LKSIPLPTEWECDE 856 (858)
Q Consensus 843 l~~L~~L~~~~c~~ 856 (858)
+..|..|.-.+|+.
T Consensus 353 ~~~l~~LN~~di~p 366 (505)
T KOG3207|consen 353 ISQLVKLNDVDISP 366 (505)
T ss_pred hhhhhhhcccccCh
Confidence 56666666666654
No 43
>PTZ00202 tuzin; Provisional
Probab=98.79 E-value=1.5e-06 Score=90.85 Aligned_cols=169 Identities=11% Similarity=0.087 Sum_probs=103.4
Q ss_pred CCcCCceeeccccHHHHHHHHhcCC-CCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHH
Q 037627 172 FSIEGNVVGFDDDVSKLLAKLLNKE-PRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRI 250 (858)
Q Consensus 172 ~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 250 (858)
+.+.+.|+||+.|++++...|.+.+ ...++++|+|++|+|||||++.+... .. + ..++.... +..++++.+
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~--l~--~--~qL~vNpr--g~eElLr~L 329 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRK--EG--M--PAVFVDVR--GTEDTLRSV 329 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhc--CC--c--eEEEECCC--CHHHHHHHH
Confidence 3456789999999999999997543 23569999999999999999999963 22 1 23333333 679999999
Q ss_pred HHhccccccchhhhhccHHHHHHHHHHHh-c-CceEEEEEEcC--CChh-hHHHHHhhCCCCCCCcEEEEEeCchhHHh-
Q 037627 251 IRSFKINVLTRELEEMREEDLERYLHNCL-Q-GKSYLVVVDDA--WQKE-TWESLKRAFPDNKNGSRVIITTRIKEVAE- 324 (858)
Q Consensus 251 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~-~~~~LlvlDd~--~~~~-~~~~l~~~l~~~~~gs~ilvTtR~~~~~~- 324 (858)
+.+|+.+... ....-.+.+.+.+.+.- . +++.+||+-== .+.. .+.+... +.....-++|++----+....
T Consensus 330 L~ALGV~p~~--~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~-la~drr~ch~v~evpleslt~~ 406 (550)
T PTZ00202 330 VKALGVPNVE--ACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVA-LACDRRLCHVVIEVPLESLTIA 406 (550)
T ss_pred HHHcCCCCcc--cHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHH-HHccchhheeeeeehHhhcchh
Confidence 9999974321 11112244444444432 2 56666666432 2221 2222221 222233456776443332221
Q ss_pred -hcCCCCceeecCCCChhHHHHHHHHHh
Q 037627 325 -RSDENAYAHKLRFLRSDESWELFCEKA 351 (858)
Q Consensus 325 -~~~~~~~~~~l~~L~~~e~~~l~~~~~ 351 (858)
..-+...-|-+.+|+.++|.++..+..
T Consensus 407 ~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 407 NTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cccCccceeEecCCCCHHHHHHHHhhcc
Confidence 111222568899999999999887654
No 44
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.78 E-value=2.1e-08 Score=103.46 Aligned_cols=290 Identities=20% Similarity=0.219 Sum_probs=186.9
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCc-ceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKF-DRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLH 276 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 276 (858)
..+.+.++|.|||||||++-.+.. .+..| +.+.++.....-++..+.-.+...++....+ -+.....+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~-------g~~~~~~~~ 82 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP-------GDSAVDTLV 82 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc-------chHHHHHHH
Confidence 367999999999999999999986 55667 4566666766667777777777777766432 123344556
Q ss_pred HHhcCceEEEEEEcCCChh-hHHHHHhhCCCCCCCcEEEEEeCchhHHhhcCCCCceeecCCCChh-HHHHHHHHHhcCC
Q 037627 277 NCLQGKSYLVVVDDAWQKE-TWESLKRAFPDNKNGSRVIITTRIKEVAERSDENAYAHKLRFLRSD-ESWELFCEKAFRK 354 (858)
Q Consensus 277 ~~l~~~~~LlvlDd~~~~~-~~~~l~~~l~~~~~gs~ilvTtR~~~~~~~~~~~~~~~~l~~L~~~-e~~~l~~~~~~~~ 354 (858)
....++|.++|+||-.... .-..+...+....+.-.++.|+|...... ...+..+.+|+.. ++.++|...+...
T Consensus 83 ~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~----ge~~~~~~~L~~~d~a~~lf~~ra~~~ 158 (414)
T COG3903 83 RRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVA----GEVHRRVPSLSLFDEAIELFVCRAVLV 158 (414)
T ss_pred HHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhccc----ccccccCCccccCCchhHHHHHHHHHh
Confidence 6677899999999986553 22233334444444566888888653322 2256777787765 7888887766544
Q ss_pred CCC---ChhHHHHHHHHHHHcCCChHHHHHHHhHhcCCChHHHHHHHHHHHhhhhcCc-------cchhhHHHhhhccCc
Q 037627 355 SNG---SEGLEKLGREMVEKCRGLPLAIVVLGGLLSMKKPQEWRRVRDHLWQHLKNDC-------IHISSLLNLSFRNLS 424 (858)
Q Consensus 355 ~~~---~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~~~~~w~~~~~~l~~~~~~~~-------~~i~~~l~~s~~~L~ 424 (858)
... .........+|.++.+|.|++|..++...+.-.......-+..-...+.+.. ......+.+||.-|+
T Consensus 159 ~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLt 238 (414)
T COG3903 159 ALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLT 238 (414)
T ss_pred ccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhh
Confidence 332 3334677899999999999999999998876643332222221111111111 456788999999999
Q ss_pred HHHHHHHhHhcCCCCCceeCHHHHHHHHHHcCccccCCCCCHHHHHHHHHHHHHhcccccccccCCCcEeEEEEcHhHHH
Q 037627 425 HELKLCFLYLGLFPEDFEINVQTLIRLLVAEGFIQQDTDRSTEEVAGEILDELINRSLIQIDKRCWGRIATCRVHDLLRD 504 (858)
Q Consensus 425 ~~~k~~f~~la~fp~~~~i~~~~l~~~w~aeg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~H~lir~ 504 (858)
..++..|..++.|...|... ...|.+-|-.. ..+.......+..+++++++...+.. ....|+.-+=++.
T Consensus 239 gwe~~~~~rLa~~~g~f~~~----l~~~~a~g~~~----~~~~y~~~~a~~ll~~kslv~a~~~~--~~a~~Rl~eT~r~ 308 (414)
T COG3903 239 GWERALFGRLAVFVGGFDLG----LALAVAAGADV----DVPRYLVLLALTLLVDKSLVVALDLL--GRARYRLLETGRR 308 (414)
T ss_pred hHHHHHhcchhhhhhhhccc----HHHHHhcCCcc----ccchHHHHHHHHHHhhccchhhhhhh--hHHHHHHHHHHHH
Confidence 99999999999998876544 22343333211 01223344557778888887654411 1123555555666
Q ss_pred HHHHHhc
Q 037627 505 LAIEQAK 511 (858)
Q Consensus 505 ~~~~~~~ 511 (858)
|+..+..
T Consensus 309 YalaeL~ 315 (414)
T COG3903 309 YALAELH 315 (414)
T ss_pred HHHHHHH
Confidence 6655543
No 45
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=8.2e-07 Score=94.50 Aligned_cols=293 Identities=15% Similarity=0.188 Sum_probs=167.7
Q ss_pred CcCCceeeccccHHHHHHHHhcC--CCCcEEEEEEecCcchHHHHHHHHhcCccccCCc--ceEEEEEeCCCCCHHHHHH
Q 037627 173 SIEGNVVGFDDDVSKLLAKLLNK--EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKF--DRCAWVSVSQDYDTKDLLL 248 (858)
Q Consensus 173 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~ 248 (858)
..|+.+.+|+.+++++...|... +..+.-+.|+|.+|+|||+.++.+++. ++... ..+++|++....++..++.
T Consensus 14 ~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~ 91 (366)
T COG1474 14 YIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLS 91 (366)
T ss_pred CCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHH
Confidence 34455999999999999887643 223334999999999999999999983 33332 1278999999999999999
Q ss_pred HHHHhccccccchhhhhccHHHHHHHHHHHh--cCceEEEEEEcCCChhhH--HHHHhhCCCCCC-CcEEE--EEeCchh
Q 037627 249 RIIRSFKINVLTRELEEMREEDLERYLHNCL--QGKSYLVVVDDAWQKETW--ESLKRAFPDNKN-GSRVI--ITTRIKE 321 (858)
Q Consensus 249 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDd~~~~~~~--~~l~~~l~~~~~-gs~il--vTtR~~~ 321 (858)
.|+.+++... .......+....+.+.+ .++.+++|||+++....- +.+-..+..... .++|+ ..+-+-.
T Consensus 92 ~i~~~~~~~p----~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~ 167 (366)
T COG1474 92 KILNKLGKVP----LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDK 167 (366)
T ss_pred HHHHHcCCCC----CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHH
Confidence 9999987221 12334455566666665 357899999999855321 222222222111 34443 3333333
Q ss_pred HHhhcCC------CCceeecCCCChhHHHHHHHHHhcCCCCC---ChhHHHHHHHHHHHcCCC-hHHHHHHHhH--hcCC
Q 037627 322 VAERSDE------NAYAHKLRFLRSDESWELFCEKAFRKSNG---SEGLEKLGREMVEKCRGL-PLAIVVLGGL--LSMK 389 (858)
Q Consensus 322 ~~~~~~~------~~~~~~l~~L~~~e~~~l~~~~~~~~~~~---~~~~~~~~~~I~~~~~G~-Plai~~~~~~--l~~~ 389 (858)
....... ....+...|-+.+|-.+++..++...-.+ .+..-+.+..++..-+|- =.|+..+-.+ ++.+
T Consensus 168 ~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~ 247 (366)
T COG1474 168 FLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAER 247 (366)
T ss_pred HHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHh
Confidence 2222211 11457899999999999999887543222 344444455555555543 3344433222 2211
Q ss_pred ------ChHHHHHHHHHHHhhhhcCccchhhHHHhhhccCcHHHHHHHhHhcCCCCCceeCHHHHHHHHHHcCccccCCC
Q 037627 390 ------KPQEWRRVRDHLWQHLKNDCIHISSLLNLSFRNLSHELKLCFLYLGLFPEDFEINVQTLIRLLVAEGFIQQDTD 463 (858)
Q Consensus 390 ------~~~~w~~~~~~l~~~~~~~~~~i~~~l~~s~~~L~~~~k~~f~~la~fp~~~~i~~~~l~~~w~aeg~i~~~~~ 463 (858)
+.+.-....+.. -.....-....||.+.|..+....... ..+....+-.... .+.....
T Consensus 248 ~~~~~v~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~ki~L~~i~~~~--~~~~~~~~y~~y~--~~~~~~~- 312 (366)
T COG1474 248 EGSRKVSEDHVREAQEEI----------ERDVLEEVLKTLPLHQKIVLLAIVELT--VEISTGELYDVYE--SLCERLR- 312 (366)
T ss_pred hCCCCcCHHHHHHHHHHh----------hHHHHHHHHHcCCHhHHHHHHHHHHhc--CCCChHHHHHHHH--HHHhhhC-
Confidence 112222111111 112334457888888887766655432 2333333332221 0011111
Q ss_pred CCHHHHHHHHHHHHHhcccccccc
Q 037627 464 RSTEEVAGEILDELINRSLIQIDK 487 (858)
Q Consensus 464 ~~~~~~~~~~l~~L~~~~ll~~~~ 487 (858)
. ......+++.+|...+++....
T Consensus 313 ~-~~~~~~~ii~~L~~lgiv~~~~ 335 (366)
T COG1474 313 T-SQRRFSDIISELEGLGIVSASL 335 (366)
T ss_pred c-hHHHHHHHHHHHHhcCeEEeee
Confidence 1 3344667888888888887544
No 46
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.75 E-value=9.2e-08 Score=105.20 Aligned_cols=176 Identities=19% Similarity=0.159 Sum_probs=104.3
Q ss_pred CceeeccccHHH---HHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHH
Q 037627 176 GNVVGFDDDVSK---LLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIR 252 (858)
Q Consensus 176 ~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 252 (858)
++|||++..+.. +..++.... ...+.|+|++|+||||||+.+++ .....| +.++........++.+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~--~~~ilL~GppGtGKTtLA~~ia~--~~~~~~-----~~l~a~~~~~~~ir~i-- 80 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGR--LSSMILWGPPGTGKTTLARIIAG--ATDAPF-----EALSAVTSGVKDLREV-- 80 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCC--CceEEEECCCCCCHHHHHHHHHH--HhCCCE-----EEEecccccHHHHHHH--
Confidence 457888776555 666665443 55788899999999999999997 333332 2222211111111111
Q ss_pred hccccccchhhhhccHHHHHHHHHHH-hcCceEEEEEEcCCChh--hHHHHHhhCCCCCCCcEEEE--EeCchh--HHhh
Q 037627 253 SFKINVLTRELEEMREEDLERYLHNC-LQGKSYLVVVDDAWQKE--TWESLKRAFPDNKNGSRVII--TTRIKE--VAER 325 (858)
Q Consensus 253 ~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDd~~~~~--~~~~l~~~l~~~~~gs~ilv--TtR~~~--~~~~ 325 (858)
.+..... ..+++.+|++|+++... ..+.+...+.. |..+++ ||.+.. +...
T Consensus 81 -------------------i~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 81 -------------------IEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPA 138 (413)
T ss_pred -------------------HHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHH
Confidence 1111111 24578899999998653 44555555543 444444 344432 1111
Q ss_pred cCCCCceeecCCCChhHHHHHHHHHhcCCCCCC-hhHHHHHHHHHHHcCCChHHHHHHHh
Q 037627 326 SDENAYAHKLRFLRSDESWELFCEKAFRKSNGS-EGLEKLGREMVEKCRGLPLAIVVLGG 384 (858)
Q Consensus 326 ~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~~I~~~~~G~Plai~~~~~ 384 (858)
.......+.+.+++.++..+++.+.+....... ...++....|++.|+|.+..+..+..
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 222226789999999999999988654311111 22356678899999999976654433
No 47
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=3e-07 Score=99.11 Aligned_cols=194 Identities=14% Similarity=0.196 Sum_probs=112.6
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
++++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.+++...-...+. ..+........++.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhcCCC
Confidence 468999999999988887643 345679999999999999999987321111000 000100111111111100
Q ss_pred cccc-chhhhhccHHHHHHHHHH---H-hcCceEEEEEEcCCChh--hHHHHHhhCCCCCCCcEEEEEeCch-hHHhhcC
Q 037627 256 INVL-TRELEEMREEDLERYLHN---C-LQGKSYLVVVDDAWQKE--TWESLKRAFPDNKNGSRVIITTRIK-EVAERSD 327 (858)
Q Consensus 256 ~~~~-~~~~~~~~~~~~~~~l~~---~-l~~~~~LlvlDd~~~~~--~~~~l~~~l~~~~~gs~ilvTtR~~-~~~~~~~ 327 (858)
.... .........+++.+.+.. . ..+++-++|+|+++... .++.+...+.......++|++|.+. .+.....
T Consensus 88 ~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~ 167 (363)
T PRK14961 88 LDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIL 167 (363)
T ss_pred CceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHH
Confidence 0000 000000111222211111 1 12455699999998764 4677777776656667777766543 3333323
Q ss_pred CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHH
Q 037627 328 ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAI 379 (858)
Q Consensus 328 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 379 (858)
.....+++.+++.++..+.+.+.+...+... .++.+..|++.++|.|..+
T Consensus 168 SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i--~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 168 SRCLQFKLKIISEEKIFNFLKYILIKESIDT--DEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 2336899999999999999888765543222 2456788999999988643
No 48
>PF13173 AAA_14: AAA domain
Probab=98.75 E-value=3.9e-08 Score=88.94 Aligned_cols=121 Identities=19% Similarity=0.253 Sum_probs=82.1
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNC 278 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 278 (858)
.+++.|+|+.|+|||||+++++++.. ....++++++......... ..+ +.+.+.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~--------------------~~~-~~~~~~~~ 57 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA--------------------DPD-LLEYFLEL 57 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh--------------------hhh-hHHHHHHh
Confidence 46899999999999999999997422 2345777777654221100 000 23334444
Q ss_pred hcCceEEEEEEcCCChhhHHHHHhhCCCCCCCcEEEEEeCchhHHhh-----cCCCCceeecCCCChhHH
Q 037627 279 LQGKSYLVVVDDAWQKETWESLKRAFPDNKNGSRVIITTRIKEVAER-----SDENAYAHKLRFLRSDES 343 (858)
Q Consensus 279 l~~~~~LlvlDd~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~~~~~-----~~~~~~~~~l~~L~~~e~ 343 (858)
...++.+|+||++.....|......+.+..++.+|++|+........ .......+++.||+-.|.
T Consensus 58 ~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 58 IKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred hccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 44478899999999988888887777665567889999998765532 112225689999998763
No 49
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.73 E-value=1.9e-07 Score=100.86 Aligned_cols=198 Identities=16% Similarity=0.146 Sum_probs=111.4
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCc-ceEEEEEeCCCCCH-HHHHH---HH
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKF-DRCAWVSVSQDYDT-KDLLL---RI 250 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~-~~~~~---~i 250 (858)
+.++|++..++.+..++..+. .+.+.++|++|+||||+|+.+++... ...+ ...+.++++..... ...+. ..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVEDPRF 91 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhcCcch
Confidence 568999999999988886543 44688999999999999999987321 1222 12344444321100 00000 00
Q ss_pred HHhccccccchhhhhccHHHHHH---HHHHHh--cCceEEEEEEcCCChh--hHHHHHhhCCCCCCCcEEEEEeCchh-H
Q 037627 251 IRSFKINVLTRELEEMREEDLER---YLHNCL--QGKSYLVVVDDAWQKE--TWESLKRAFPDNKNGSRVIITTRIKE-V 322 (858)
Q Consensus 251 ~~~l~~~~~~~~~~~~~~~~~~~---~l~~~l--~~~~~LlvlDd~~~~~--~~~~l~~~l~~~~~gs~ilvTtR~~~-~ 322 (858)
...++.. . .......+.+.. ...... .+.+-+||+||++... ....+...+......+++|+|+.... +
T Consensus 92 ~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~ 168 (337)
T PRK12402 92 AHFLGTD-K--RIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKL 168 (337)
T ss_pred hhhhhhh-h--hhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhC
Confidence 0000000 0 000001111111 221211 2345589999997653 34445554444444567887775432 2
Q ss_pred HhhcCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHH
Q 037627 323 AERSDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVV 381 (858)
Q Consensus 323 ~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~ 381 (858)
..........+.+.+++.++...++.+.+...... -.++.+..|++.++|.+-.+..
T Consensus 169 ~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 169 IPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred chhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 22222233678999999999999998876554432 2256788899999998765544
No 50
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.72 E-value=3.4e-09 Score=99.51 Aligned_cols=128 Identities=26% Similarity=0.355 Sum_probs=48.0
Q ss_pred cccCCCeeEEeecccccccchhhhh-cCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCc
Q 037627 676 KLVNLRDLRIISKYQEEEFSFKSIA-YLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNL 753 (858)
Q Consensus 676 ~l~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L 753 (858)
...++++|++.+|.+... ..++ .+.+|+.|++++|.+..+ +.+..+++|+.|++++| +..++..+...+|+|
T Consensus 17 n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred cccccccccccccccccc---cchhhhhcCCCEEECCCCCCccc---cCccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 334456666666654433 2343 467788888888777644 45666788888888886 666766555447899
Q ss_pred cEEEEecccCCC-CCccccCCCCCCCeeEeeccccCCceE--EECCCCccccceeeecC
Q 037627 754 ECLSLKKSHLKE-DPMPKLEKLPNLTILDLGLKSYGGKKM--ICTTKGFHLLEILQLID 809 (858)
Q Consensus 754 ~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~--~~~~~~~~~L~~L~l~~ 809 (858)
+.|+|++|+|.. .....+..+|+|+.|+|.+|+++...- .+....+|+|+.||-..
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 999999998864 234567788999999999888764210 00112366777776554
No 51
>PRK04195 replication factor C large subunit; Provisional
Probab=98.72 E-value=9.7e-07 Score=99.15 Aligned_cols=243 Identities=12% Similarity=0.129 Sum_probs=138.4
Q ss_pred CceeeccccHHHHHHHHhcC--CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHh
Q 037627 176 GNVVGFDDDVSKLLAKLLNK--EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRS 253 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 253 (858)
++++|.+..++++..++..- +...+.+.|+|++|+||||+|+.++++ .. |+ ++-++.+.... ...+..++..
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e--l~--~~-~ielnasd~r~-~~~i~~~i~~ 87 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND--YG--WE-VIELNASDQRT-ADVIERVAGE 87 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--cC--CC-EEEEccccccc-HHHHHHHHHH
Confidence 46899999999999988642 223678999999999999999999984 22 22 33334443222 2233333322
Q ss_pred ccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh------hHHHHHhhCCCCCCCcEEEEEeCch-hHHh-h
Q 037627 254 FKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE------TWESLKRAFPDNKNGSRVIITTRIK-EVAE-R 325 (858)
Q Consensus 254 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~------~~~~l~~~l~~~~~gs~ilvTtR~~-~~~~-~ 325 (858)
..... .....++-+||+|+++... .+..+...+... +..||+|+.+. .... .
T Consensus 88 ~~~~~------------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 88 AATSG------------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA--KQPIILTANDPYDPSLRE 147 (482)
T ss_pred hhccC------------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC--CCCEEEeccCccccchhh
Confidence 11110 0011367799999998642 255555555422 23466665433 1111 1
Q ss_pred cCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhHhcCC-C---hHHHHHHHHHH
Q 037627 326 SDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVLGGLLSMK-K---PQEWRRVRDHL 401 (858)
Q Consensus 326 ~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~-~---~~~w~~~~~~l 401 (858)
.......+.+.+++.++....+.+.+.......+ ++....|++.++|....+......+... . .+....+.
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~--~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~--- 222 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD--DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLG--- 222 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhh---
Confidence 2222367999999999999999887755443322 5678899999999876655443333322 2 22221111
Q ss_pred HhhhhcCccchhhHHHhhhc-cCcHHHHHHHhHhcCCCCCceeCHHHHHHHHHHcCcccc
Q 037627 402 WQHLKNDCIHISSLLNLSFR-NLSHELKLCFLYLGLFPEDFEINVQTLIRLLVAEGFIQQ 460 (858)
Q Consensus 402 ~~~~~~~~~~i~~~l~~s~~-~L~~~~k~~f~~la~fp~~~~i~~~~l~~~w~aeg~i~~ 460 (858)
. .+....++.++..-+. .-.......+..+ .++.+ .+-.|+.+.+...
T Consensus 223 -~--~d~~~~if~~l~~i~~~k~~~~a~~~~~~~-------~~~~~-~i~~~l~en~~~~ 271 (482)
T PRK04195 223 -R--RDREESIFDALDAVFKARNADQALEASYDV-------DEDPD-DLIEWIDENIPKE 271 (482)
T ss_pred -c--CCCCCCHHHHHHHHHCCCCHHHHHHHHHcc-------cCCHH-HHHHHHHhccccc
Confidence 0 1122455666665554 2233333322221 23333 4568999988754
No 52
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.70 E-value=9.4e-07 Score=98.28 Aligned_cols=196 Identities=16% Similarity=0.177 Sum_probs=116.3
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
+++||.+...+.|..++..+. -...+.++|+.|+||||+|+.+++...-.. ++. ..++......+.+...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~-~~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCET------GVT-STPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCC-CCCCccCHHHHHHhcCCC
Confidence 568999999999999887653 346789999999999999999987311110 110 011111112222211000
Q ss_pred cccc-chhhhhccHHHHHHHHHHH----hcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCchh-HHhhcC
Q 037627 256 INVL-TRELEEMREEDLERYLHNC----LQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRIKE-VAERSD 327 (858)
Q Consensus 256 ~~~~-~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~-~~~~~~ 327 (858)
.... .........+++.+.+... ..++.-++|+|+++.. ..+..+...+.....+.++|++|.+.. +.....
T Consensus 87 pDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIl 166 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVI 166 (702)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHH
Confidence 0000 0000011222222222211 2356679999999865 456777777766556677887776542 222222
Q ss_pred CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHH
Q 037627 328 ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVV 381 (858)
Q Consensus 328 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~ 381 (858)
.....+++++++.++..+.+.+.+.......+ ++....|++.++|.+..+..
T Consensus 167 SRCq~feFkpLs~eEI~k~L~~Il~kEgI~id--~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 167 SRCLQFTLRPLAVDEITKHLGAILEKEQIAAD--QDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred HhhheeeccCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHH
Confidence 23378999999999999999887755443222 56678899999998855443
No 53
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.70 E-value=3.2e-07 Score=105.12 Aligned_cols=197 Identities=13% Similarity=0.116 Sum_probs=114.8
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++...-...... .++........+.....
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~-------~pCg~C~sC~~i~~g~~ 87 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTA-------TPCGVCSSCVEIAQGRF 87 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCC-------CCCCCchHHHHHhcCCC
Confidence 568999999999998887653 2345689999999999999999974211111000 00000001111111000
Q ss_pred cc---ccch-hhhhccHHHHHHHHHH-HhcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCch-hHHhhcC
Q 037627 256 IN---VLTR-ELEEMREEDLERYLHN-CLQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRIK-EVAERSD 327 (858)
Q Consensus 256 ~~---~~~~-~~~~~~~~~~~~~l~~-~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~-~~~~~~~ 327 (858)
.. .... .........+.+.+.. ...++.-++|||+++.. +.+..|+..+-......++|++|.+. .+...+.
T Consensus 88 ~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIl 167 (944)
T PRK14949 88 VDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVL 167 (944)
T ss_pred ceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHH
Confidence 00 0000 0000011122222211 12467789999999865 46778888777656667776665544 3333322
Q ss_pred CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 037627 328 ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVL 382 (858)
Q Consensus 328 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 382 (858)
.....+.+++++.++..+++.+.+..... ...++.+..|++.++|.|.-+..+
T Consensus 168 SRCq~f~fkpLs~eEI~~~L~~il~~EgI--~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 168 SRCLQFNLKSLTQDEIGTQLNHILTQEQL--PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred HhheEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 23378999999999999999887654322 222567788999999999644433
No 54
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.68 E-value=6.7e-09 Score=97.54 Aligned_cols=108 Identities=27% Similarity=0.304 Sum_probs=27.3
Q ss_pred ccCCcccceEeccCCcccccCcccc-cCCCCcEEeccccccccccchhhhccccccccccccccccCCCCCcccccccee
Q 037627 586 MVKLVNLKYLRLTNAHIDVIPSCIA-KLQRLQTLDISGNMAFMELPREICELKELRHLIGNFTGTLNIENLSNLQTLKYV 664 (858)
Q Consensus 586 ~~~l~~L~~L~L~~n~i~~lp~~l~-~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~ 664 (858)
+.+..+++.|+|++|.|+.+. .++ .+.+|+.|++++| .+..++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l~---------------------------------- 58 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNN-QITKLE---------------------------------- 58 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS---S--T----------------------------------
T ss_pred ccccccccccccccccccccc-chhhhhcCCCEEECCCC-CCcccc----------------------------------
Confidence 445556777788877777663 454 4677777777777 333222
Q ss_pred ecccccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc
Q 037627 665 ERGSWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK 738 (858)
Q Consensus 665 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 738 (858)
.+..+++|+.|++++|....... .....+++|+.|++++|.+..+..+..+..+++|+.|++.+|
T Consensus 59 --------~l~~L~~L~~L~L~~N~I~~i~~-~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 59 --------GLPGLPRLKTLDLSNNRISSISE-GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp --------T----TT--EEE--SS---S-CH-HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred --------CccChhhhhhcccCCCCCCcccc-chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCC
Confidence 12223344444444444333211 112356777777777776655544444444444444444443
No 55
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.67 E-value=2.8e-07 Score=93.09 Aligned_cols=167 Identities=15% Similarity=0.185 Sum_probs=99.2
Q ss_pred cccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccch
Q 037627 182 DDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTR 261 (858)
Q Consensus 182 ~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 261 (858)
+..++.+.+++.. ...+.+.|+|++|+|||+||+.+++. ........++++++.... ..
T Consensus 23 ~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~------~~----------- 81 (226)
T TIGR03420 23 AELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQ------AD----------- 81 (226)
T ss_pred HHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHH------hH-----------
Confidence 3455666665443 34668999999999999999999973 322233456665542210 00
Q ss_pred hhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh---hH-HHHHhhCCC-CCCCcEEEEEeCchhH---------HhhcC
Q 037627 262 ELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE---TW-ESLKRAFPD-NKNGSRVIITTRIKEV---------AERSD 327 (858)
Q Consensus 262 ~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~---~~-~~l~~~l~~-~~~gs~ilvTtR~~~~---------~~~~~ 327 (858)
.. +...+.+ .-+||+||++... .| +.+...+.. ...+..+|+||+.... .....
T Consensus 82 -------~~----~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~ 149 (226)
T TIGR03420 82 -------PE----VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLA 149 (226)
T ss_pred -------HH----HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHh
Confidence 00 1111222 2389999998543 23 334433322 1223478888875421 11111
Q ss_pred CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHHHh
Q 037627 328 ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVLGG 384 (858)
Q Consensus 328 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~ 384 (858)
. ...+++.+++.++...++...+...... --++..+.|++.+.|+|..+..+..
T Consensus 150 ~-~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 150 W-GLVFQLPPLSDEEKIAALQSRAARRGLQ--LPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred c-CeeEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHHH
Confidence 1 2578999999999999998765433222 2246678888889999987766644
No 56
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.67 E-value=6.4e-08 Score=88.40 Aligned_cols=114 Identities=18% Similarity=0.334 Sum_probs=78.2
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCC-----cceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNK-----FDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLE 272 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 272 (858)
+.+++.|+|++|+|||+++++++.+ .... -..++|+.+....+...+...++..++..... ..+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~l~ 76 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS----RQTSDELR 76 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----TS-HHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----cCCHHHHH
Confidence 3568999999999999999999983 2211 34577999988889999999999999877653 23445666
Q ss_pred HHHHHHhcCc-eEEEEEEcCCCh-h--hHHHHHhhCCCCCCCcEEEEEeCc
Q 037627 273 RYLHNCLQGK-SYLVVVDDAWQK-E--TWESLKRAFPDNKNGSRVIITTRI 319 (858)
Q Consensus 273 ~~l~~~l~~~-~~LlvlDd~~~~-~--~~~~l~~~l~~~~~gs~ilvTtR~ 319 (858)
+.+.+.+... ..+||+|+++.. . .++.+..... ..+.++|+..+.
T Consensus 77 ~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 77 SLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 6677766544 469999999765 2 3444544444 557788888764
No 57
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.65 E-value=6.3e-10 Score=110.90 Aligned_cols=133 Identities=21% Similarity=0.229 Sum_probs=69.0
Q ss_pred cCCCCCeEEeeccCCccccC---CCCCCCCCCccEEEeccc-CCC-----CChhhhhccCCccEEEEecccCCCC----C
Q 037627 701 YLKNLQLLSIRLSDDTCFDS---LQPLSDCSYLIDLRLSGK-IEK-----LPEDLHEVLPNLECLSLKKSHLKED----P 767 (858)
Q Consensus 701 ~l~~L~~L~l~~~~~~~~~~---~~~l~~l~~L~~L~l~~~-~~~-----~p~~~~~~l~~L~~L~L~~n~l~~~----~ 767 (858)
+-++|+++....|.....+. -..+..++.|+.+.+..| +.. +...+.. +++|+.|+|.+|.++.. .
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~-~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEH-CPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHh-CCcceeeecccchhhhHHHHHH
Confidence 34566666666554433211 112444566666666654 210 1112222 57777777777766532 2
Q ss_pred ccccCCCCCCCeeEeeccccCCceEE----ECCCCccccceeeecCCCCCCeE-----EEccCccccccceeecccc
Q 037627 768 MPKLEKLPNLTILDLGLKSYGGKKMI----CTTKGFHLLEILQLIDLNDLAQW-----QVEDGAMPILRGLRVTNAY 835 (858)
Q Consensus 768 ~~~l~~l~~L~~L~L~~n~~~~~~~~----~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~l~~L~~L~l~~c~ 835 (858)
-..++.+|+|+.|++++|.+...... .....+|+|+.|.+.+|. ++.- .......|.|+.|++++|.
T Consensus 234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 23455666777777777766543211 112346777777776643 2210 1112246777777777774
No 58
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=9.9e-07 Score=93.47 Aligned_cols=177 Identities=13% Similarity=0.227 Sum_probs=114.1
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCc----cccCCcceEEEEEe-CCCCCHHHHHHHH
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNN----DVKNKFDRCAWVSV-SQDYDTKDLLLRI 250 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~----~~~~~f~~~~wv~~-~~~~~~~~~~~~i 250 (858)
.+++|-+.-.+.+...+..+. -.+...++|+.|+||||+|+.+++.. ....|+|...|... +.....++ ++++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~ 81 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNI 81 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHH
Confidence 357888888888888886543 34577899999999999999998731 12345554445432 22222211 2222
Q ss_pred HHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCC--hhhHHHHHhhCCCCCCCcEEEEEeCchhHH-hhcC
Q 037627 251 IRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQ--KETWESLKRAFPDNKNGSRVIITTRIKEVA-ERSD 327 (858)
Q Consensus 251 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~--~~~~~~l~~~l~~~~~gs~ilvTtR~~~~~-~~~~ 327 (858)
...+... -..+++-++|+|+++. .+.+..++..+...+.++.+|++|.+.+.. ....
T Consensus 82 ~~~~~~~--------------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 82 IEEVNKK--------------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHhcC--------------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 2222110 1124556777777764 457888999998888889888888665422 2222
Q ss_pred CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHH
Q 037627 328 ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIV 380 (858)
Q Consensus 328 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~ 380 (858)
.....+.+.+++.++....+.+..... . ++.+..++..++|.|.-+.
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~~---~---~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYNDI---K---EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcCC---C---HHHHHHHHHHcCCCHHHHH
Confidence 233789999999999988887654211 1 3446788999999986554
No 59
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.62 E-value=1.3e-09 Score=115.01 Aligned_cols=174 Identities=26% Similarity=0.380 Sum_probs=120.1
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhcccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELR 640 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~ 640 (858)
-..||+.|. +. ++|..++.+..|..+.|..|.+..+|..++++..|.+|||+.| .+..+|..+..|+
T Consensus 78 ~~aDlsrNR-------~~--elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp--- 144 (722)
T KOG0532|consen 78 VFADLSRNR-------FS--ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP--- 144 (722)
T ss_pred hhhhccccc-------cc--cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc---
Confidence 456888888 66 8888888888899999999999889988999999999999988 6667777666554
Q ss_pred ccccccccccCCCCCccccccceeecccccc-cCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCcccc
Q 037627 641 HLIGNFTGTLNIENLSNLQTLKYVERGSWAE-INPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFD 719 (858)
Q Consensus 641 ~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 719 (858)
|+.|-+++|+.... .+++.+..|..|+.+.|.... ++ ..++.+.+|+.|++..|+...++
T Consensus 145 -----------------Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~s-lp-sql~~l~slr~l~vrRn~l~~lp 205 (722)
T KOG0532|consen 145 -----------------LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQS-LP-SQLGYLTSLRDLNVRRNHLEDLP 205 (722)
T ss_pred -----------------ceeEEEecCccccCCcccccchhHHHhhhhhhhhhh-ch-HHhhhHHHHHHHHHhhhhhhhCC
Confidence 44555555553332 234455666677776665433 33 57778888888888777655432
Q ss_pred CCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCcccc
Q 037627 720 SLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKL 771 (858)
Q Consensus 720 ~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l 771 (858)
+.+..+ .|..|+++.| +..+|..+.. +..|++|.|.+|.+. .+|..+
T Consensus 206 --~El~~L-pLi~lDfScNkis~iPv~fr~-m~~Lq~l~LenNPLq-SPPAqI 253 (722)
T KOG0532|consen 206 --EELCSL-PLIRLDFSCNKISYLPVDFRK-MRHLQVLQLENNPLQ-SPPAQI 253 (722)
T ss_pred --HHHhCC-ceeeeecccCceeecchhhhh-hhhheeeeeccCCCC-CChHHH
Confidence 223322 4667777775 6667777766 577777777777775 444443
No 60
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.61 E-value=5.9e-08 Score=94.75 Aligned_cols=46 Identities=26% Similarity=0.364 Sum_probs=32.0
Q ss_pred ceeeccccHHHHHHHHh-cCCCCcEEEEEEecCcchHHHHHHHHhcC
Q 037627 177 NVVGFDDDVSKLLAKLL-NKEPRRFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 177 ~~vGr~~~~~~l~~~L~-~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
.||||+++++++...+. ......+.+.|+|++|+|||+|+++++..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999994 22345789999999999999999999884
No 61
>PF14516 AAA_35: AAA-like domain
Probab=98.61 E-value=9.1e-06 Score=86.36 Aligned_cols=205 Identities=14% Similarity=0.141 Sum_probs=122.4
Q ss_pred cCCceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCC-----CCHHHHHH
Q 037627 174 IEGNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQD-----YDTKDLLL 248 (858)
Q Consensus 174 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~ 248 (858)
+.+.+|.|...-+++.+.+..+ ...+.|.|+-.+|||+|...+.+..+. ..+ .++++++... .+...+++
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~~~f~~ 83 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDLEQFLR 83 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCHHHHHH
Confidence 4456789997777777777653 358999999999999999999874222 233 4667877542 24555555
Q ss_pred HHHHhc----cccccchh-h--hhccHHHHHHHHHHHh---cCceEEEEEEcCCChh----hHHHHHhhCCC----C---
Q 037627 249 RIIRSF----KINVLTRE-L--EEMREEDLERYLHNCL---QGKSYLVVVDDAWQKE----TWESLKRAFPD----N--- 307 (858)
Q Consensus 249 ~i~~~l----~~~~~~~~-~--~~~~~~~~~~~l~~~l---~~~~~LlvlDd~~~~~----~~~~l~~~l~~----~--- 307 (858)
.++..+ .......+ . ...........+.+.+ .+++.+|+||+++..- ...++...+.. .
T Consensus 84 ~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~ 163 (331)
T PF14516_consen 84 WFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNN 163 (331)
T ss_pred HHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccC
Confidence 555444 33321000 0 0112223344444432 2689999999998541 12233332221 1
Q ss_pred --CCCcEEEEEeCch-hHHhhcCCC----CceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHH
Q 037627 308 --KNGSRVIITTRIK-EVAERSDEN----AYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIV 380 (858)
Q Consensus 308 --~~gs~ilvTtR~~-~~~~~~~~~----~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~ 380 (858)
...-+++++...+ ......... ...+.|++|+.+|...|..+....-. ....++|...+||+|..+.
T Consensus 164 ~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~------~~~~~~l~~~tgGhP~Lv~ 237 (331)
T PF14516_consen 164 PIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS------QEQLEQLMDWTGGHPYLVQ 237 (331)
T ss_pred cccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC------HHHHHHHHHHHCCCHHHHH
Confidence 1112233332222 111111111 15789999999999999987643311 2338999999999999999
Q ss_pred HHHhHhcCC
Q 037627 381 VLGGLLSMK 389 (858)
Q Consensus 381 ~~~~~l~~~ 389 (858)
.++..+...
T Consensus 238 ~~~~~l~~~ 246 (331)
T PF14516_consen 238 KACYLLVEE 246 (331)
T ss_pred HHHHHHHHc
Confidence 999999665
No 62
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.61 E-value=1.7e-06 Score=92.66 Aligned_cols=180 Identities=15% Similarity=0.159 Sum_probs=108.2
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEe--CCCCCHHHHHHHHHHh
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSV--SQDYDTKDLLLRIIRS 253 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~ 253 (858)
++++|++..++.+..++..+. .+.+.|+|++|+||||+|+.+++.. ....+. ..++.+ +..... ....+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~-~~~i~~~~~~~~~~-~~~~~~i~~ 91 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALAREL-YGEDWR-ENFLELNASDERGI-DVIRNKIKE 91 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHH-cCCccc-cceEEeccccccch-HHHHHHHHH
Confidence 458899999999999886543 4457999999999999999998731 111221 122222 211111 111111111
Q ss_pred ccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCch-hHHhhcCCCC
Q 037627 254 FKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRIK-EVAERSDENA 330 (858)
Q Consensus 254 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~-~~~~~~~~~~ 330 (858)
+....+ .....+-++++|+++.. +....+...+......+.+|+++... .+........
T Consensus 92 ~~~~~~------------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 92 FARTAP------------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHhcCC------------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 100000 00134568999999755 33455666665545566777776433 1211111122
Q ss_pred ceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHH
Q 037627 331 YAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIV 380 (858)
Q Consensus 331 ~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~ 380 (858)
..+++.+++.++...++...+...+... .++.+..+++.++|.+.-+.
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~i--~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIEI--TDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 5789999999999999988876544322 25678889999999986643
No 63
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.61 E-value=2.1e-07 Score=89.17 Aligned_cols=178 Identities=22% Similarity=0.202 Sum_probs=98.0
Q ss_pred CCceeeccccHHHHHHHHhc---CCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHH
Q 037627 175 EGNVVGFDDDVSKLLAKLLN---KEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRII 251 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 251 (858)
=++|||.+.-++.+.-.+.. .+.....+.+||++|+||||||.-+++ .....|. +++...-...
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~~i~k~-------- 89 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGPAIEKA-------- 89 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECCC--SC--------
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccchhhhhH--------
Confidence 36799999888876555442 234567899999999999999999998 5555542 2332111011
Q ss_pred HhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh--hHHHHHhhCCC--------CCCC-----------
Q 037627 252 RSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE--TWESLKRAFPD--------NKNG----------- 310 (858)
Q Consensus 252 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~--~~~~l~~~l~~--------~~~g----------- 310 (858)
.++...+.. + +++.+|.+|+++... +-+.+...+.+ .+++
T Consensus 90 -----------------~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 90 -----------------GDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp -----------------HHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----
T ss_pred -----------------HHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCc
Confidence 111111111 2 245578889998653 22333333221 1111
Q ss_pred cEEEEEeCchhHHhhcCCCC-ceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhHh
Q 037627 311 SRVIITTRIKEVAERSDENA-YAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVLGGLL 386 (858)
Q Consensus 311 s~ilvTtR~~~~~~~~~~~~-~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l 386 (858)
+-|=.|||...+........ ...+++..+.+|-..++.+.+..-.. +-.++.+.+|++++.|.|--..-+-+.+
T Consensus 151 TligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i--~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI--EIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred eEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 22335888765554444433 34589999999999999887655443 3336789999999999997655544443
No 64
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=7.2e-07 Score=98.88 Aligned_cols=202 Identities=13% Similarity=0.139 Sum_probs=115.6
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
+++||-+..++.|..++..+. -...+.++|+.|+||||+|+.+++...-... +...-+ .+..+......+.|...-.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p-~~~~g~-~~~PCG~C~sC~~I~aG~h 92 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGA-DGEGGI-TAQPCGQCRACTEIDAGRF 92 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCc-cccccC-CCCCCcccHHHHHHHcCCC
Confidence 468999999999999887653 3456789999999999999999873211000 000000 0001111111222211000
Q ss_pred cccc-chhhhhccHHHHHHHHHHH----hcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeC-chhHHhhcC
Q 037627 256 INVL-TRELEEMREEDLERYLHNC----LQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTR-IKEVAERSD 327 (858)
Q Consensus 256 ~~~~-~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR-~~~~~~~~~ 327 (858)
.... .........+++.+.+... ..++.-++|||+++.. ..+..|+..+..-..+.++|++|. ...+..-+.
T Consensus 93 pDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIr 172 (700)
T PRK12323 93 VDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVL 172 (700)
T ss_pred CcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHH
Confidence 0000 0000111233333333322 2456679999999865 467778877766555666655554 444443333
Q ss_pred CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 037627 328 ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVL 382 (858)
Q Consensus 328 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 382 (858)
.....+.+..++.++..+.+.+.+....... .++....|++.++|.|.....+
T Consensus 173 SRCq~f~f~~ls~eei~~~L~~Il~~Egi~~--d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 173 SRCLQFNLKQMPPGHIVSHLDAILGEEGIAH--EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHhcccCCCChHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 3336899999999999999887765433222 2455688999999999654433
No 65
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.59 E-value=5.9e-09 Score=101.33 Aligned_cols=124 Identities=24% Similarity=0.292 Sum_probs=80.1
Q ss_pred cCCCCcEEeccccccccccchhhhccccccccc---cccccccCCCCCccccccceeecccccccCc-ccccCCCeeEEe
Q 037627 611 KLQRLQTLDISGNMAFMELPREICELKELRHLI---GNFTGTLNIENLSNLQTLKYVERGSWAEINP-EKLVNLRDLRII 686 (858)
Q Consensus 611 ~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~---~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~L~~L~l~ 686 (858)
.+..|++||||+| .+..+..++.-+++++.|+ |.+....++..+++|+.|++++|........ ..+.|.+.|.+.
T Consensus 282 TWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 282 TWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hHhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 3456777777777 6666666666666666662 3333334566677788888888775544433 266777777777
Q ss_pred ecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc
Q 037627 687 SKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK 738 (858)
Q Consensus 687 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 738 (858)
.|..... +.++++-+|..|++++|++..+.....++++|.|+.+.|.+|
T Consensus 361 ~N~iE~L---SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 361 QNKIETL---SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred hhhHhhh---hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence 7653322 456666777777777777766666666777777777777765
No 66
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.59 E-value=8.5e-07 Score=89.35 Aligned_cols=152 Identities=17% Similarity=0.165 Sum_probs=92.4
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNC 278 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 278 (858)
.+.+.|+|++|+|||+|++.+++. ....-..+.++++..... ...+..+.+.+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~------------------------~~~~~~~~~~~- 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW------------------------FVPEVLEGMEQ- 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh------------------------hhHHHHHHhhh-
Confidence 468999999999999999999973 222233466766642100 00111111111
Q ss_pred hcCceEEEEEEcCCCh---hhHHHH-HhhCCCC-CCC-cEEEEEeCchhH---------HhhcCCCCceeecCCCChhHH
Q 037627 279 LQGKSYLVVVDDAWQK---ETWESL-KRAFPDN-KNG-SRVIITTRIKEV---------AERSDENAYAHKLRFLRSDES 343 (858)
Q Consensus 279 l~~~~~LlvlDd~~~~---~~~~~l-~~~l~~~-~~g-s~ilvTtR~~~~---------~~~~~~~~~~~~l~~L~~~e~ 343 (858)
--+|++||++.. ..|+.. ...+... ..| .++|+||+.+.. ...+..+ .++++.++++++-
T Consensus 98 ----~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g-~~~~l~~~~~~~~ 172 (235)
T PRK08084 98 ----LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWG-QIYKLQPLSDEEK 172 (235)
T ss_pred ----CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCC-ceeeecCCCHHHH
Confidence 237899999754 344432 2222211 123 469999986532 2222222 6889999999999
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHHHh
Q 037627 344 WELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVLGG 384 (858)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~ 384 (858)
.+++.+++.......+ +++..-|++++.|..-.+..+-.
T Consensus 173 ~~~l~~~a~~~~~~l~--~~v~~~L~~~~~~d~r~l~~~l~ 211 (235)
T PRK08084 173 LQALQLRARLRGFELP--EDVGRFLLKRLDREMRTLFMTLD 211 (235)
T ss_pred HHHHHHHHHHcCCCCC--HHHHHHHHHhhcCCHHHHHHHHH
Confidence 9999886655433222 57778888888888766655443
No 67
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.59 E-value=4.2e-08 Score=108.37 Aligned_cols=178 Identities=31% Similarity=0.375 Sum_probs=88.5
Q ss_pred ccccCCcccceEeccCCcccccCcccccCC-CCcEEeccccccccccchhhhccccccccccccccccCCCCCccccccc
Q 037627 584 EEMVKLVNLKYLRLTNAHIDVIPSCIAKLQ-RLQTLDISGNMAFMELPREICELKELRHLIGNFTGTLNIENLSNLQTLK 662 (858)
Q Consensus 584 ~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~-~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~ 662 (858)
..+..++.+..|++.+|.++.+|.....+. +|+.|++++| .+..+|..+..+++|+ .|+
T Consensus 110 ~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~-------------------~L~ 169 (394)
T COG4886 110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLK-------------------NLD 169 (394)
T ss_pred hhhhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhcccccc-------------------ccc
Confidence 445555678888888888888877777664 7888888887 5555554444444444 444
Q ss_pred eeecccccccCcc-cccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CC
Q 037627 663 YVERGSWAEINPE-KLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IE 740 (858)
Q Consensus 663 l~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~ 740 (858)
+++|+........ ..++|+.|.+++|...... ..+.....|++|.++.|.... .+..+..+.++..|.+.++ +.
T Consensus 170 l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~--~~~~~~~~L~~l~~~~N~~~~--~~~~~~~~~~l~~l~l~~n~~~ 245 (394)
T COG4886 170 LSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLP--PEIELLSALEELDLSNNSIIE--LLSSLSNLKNLSGLELSNNKLE 245 (394)
T ss_pred cCCchhhhhhhhhhhhhhhhheeccCCccccCc--hhhhhhhhhhhhhhcCCccee--cchhhhhcccccccccCCceee
Confidence 4444433333222 3444444444444322221 111223334444444442111 2223333444444444443 22
Q ss_pred CCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccC
Q 037627 741 KLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYG 788 (858)
Q Consensus 741 ~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 788 (858)
.++..+.. +++|+.|++++|.++.... ++.+.+|+.|++++|.+.
T Consensus 246 ~~~~~~~~-l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 246 DLPESIGN-LSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred eccchhcc-ccccceecccccccccccc--ccccCccCEEeccCcccc
Confidence 22333333 4556666666665543222 555566666666655443
No 68
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=1.4e-06 Score=97.11 Aligned_cols=182 Identities=14% Similarity=0.189 Sum_probs=112.5
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccC-------------------CcceEEEEE
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKN-------------------KFDRCAWVS 236 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~f~~~~wv~ 236 (858)
.++||.+..++.+...+..+. -...+.++|+.|+||||+|+.+++...-.. .|..+++++
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieid 94 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEID 94 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEee
Confidence 468999999999998886543 345678999999999999999986311000 111122222
Q ss_pred eCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHH-hcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEE
Q 037627 237 VSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNC-LQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRV 313 (858)
Q Consensus 237 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~i 313 (858)
.......+ +...+.+.+... ..+++-++|+|+++.. ..++.++..+......+.+
T Consensus 95 aas~~gvd----------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 95 AASRTGVE----------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred cccccCHH----------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 11111100 112222222211 2456779999999855 4577788777766556666
Q ss_pred EEEe-CchhHHhhcCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChH-HHHHH
Q 037627 314 IITT-RIKEVAERSDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPL-AIVVL 382 (858)
Q Consensus 314 lvTt-R~~~~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~ 382 (858)
|++| ....+..........+++.+++.++....+.+.+...+.. ..++....|++.++|.+. |+..+
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~--~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENIN--SDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6544 4333443333333789999999999998888766443322 225567889999999774 44444
No 69
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.58 E-value=1.8e-06 Score=95.60 Aligned_cols=197 Identities=16% Similarity=0.180 Sum_probs=114.4
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcce-EEEEEeCCCCCHHHHHHHHHHhc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDR-CAWVSVSQDYDTKDLLLRIIRSF 254 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l 254 (858)
.++||-+..++.+...+..+. -.+.+.++|+.|+||||+|+.+++...-...... ..+. +.........+....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~----~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIK----TCEQCTNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcC----CCCCChHHHHHhcCC
Confidence 467899999988888776542 3467899999999999999999873211111000 0000 000111111111100
Q ss_pred ccccc-chhhhhccHHHHHHHHHHH----hcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEE-EeCchhHHhhc
Q 037627 255 KINVL-TRELEEMREEDLERYLHNC----LQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVII-TTRIKEVAERS 326 (858)
Q Consensus 255 ~~~~~-~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilv-TtR~~~~~~~~ 326 (858)
..... .........+++.+.+... +.+++-++|+|+++.. ..+..+...+....+.+.+|+ ||+...+....
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI 175 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATI 175 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHH
Confidence 00000 0000011222222222221 2456779999999865 457788877776666666665 44544554433
Q ss_pred CCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHH
Q 037627 327 DENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAI 379 (858)
Q Consensus 327 ~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 379 (858)
......+++.+++.++....+.+.+...+...+ ++....|++.++|.+.-+
T Consensus 176 ~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie--~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 176 ISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD--IEALRIIAYKSEGSARDA 226 (507)
T ss_pred HhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 333467999999999999999988865443222 456778999999988544
No 70
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=1.3e-06 Score=97.14 Aligned_cols=193 Identities=18% Similarity=0.129 Sum_probs=113.1
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
++++|.+...+.|..++..+. -...+.++|++|+||||+|+.+++...-...+....|.+.+. ..+.....
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc--------~~i~~~~h 84 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC--------LAVRRGAH 84 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh--------HHHhcCCC
Confidence 468999988888888877653 345679999999999999999987422111121122221110 00100000
Q ss_pred ccccc-hhhhhccHHH---HHHHHHH-HhcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCc-hhHHhhcC
Q 037627 256 INVLT-RELEEMREED---LERYLHN-CLQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRI-KEVAERSD 327 (858)
Q Consensus 256 ~~~~~-~~~~~~~~~~---~~~~l~~-~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~-~~~~~~~~ 327 (858)
..... ........+. +.+.+.. -..+++-++|+|+++.. ..+..+...+......+.+|+++.. ..+.....
T Consensus 85 ~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~ 164 (504)
T PRK14963 85 PDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTIL 164 (504)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHh
Confidence 00000 0000111122 2222211 12356679999999855 4577777777665555666655543 33333333
Q ss_pred CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHH
Q 037627 328 ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAI 379 (858)
Q Consensus 328 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 379 (858)
.....+++.+++.++..+.+.+.+...+... .++.+..|++.++|.+--+
T Consensus 165 SRc~~~~f~~ls~~el~~~L~~i~~~egi~i--~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 165 SRTQHFRFRRLTEEEIAGKLRRLLEAEGREA--EPEALQLVARLADGAMRDA 214 (504)
T ss_pred cceEEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 3346899999999999999998876544322 2567788999999999644
No 71
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=6.9e-07 Score=96.61 Aligned_cols=193 Identities=15% Similarity=0.110 Sum_probs=113.3
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
+++||.+..++.|..++..+. -...+.++|+.|+||||+|+.++....- ..... ...+... .....+.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnc-e~~~~--~~pCg~C----~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNC-ENPIG--NEPCNEC----TSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCc-ccccC--ccccCCC----cHHHHHHccCC
Confidence 568999999999888887654 2346899999999999999999873211 11100 0001110 11122221111
Q ss_pred ccccc-hhhhhccHH---HHHHHHHHH-hcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeC-chhHHhhcC
Q 037627 256 INVLT-RELEEMREE---DLERYLHNC-LQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTR-IKEVAERSD 327 (858)
Q Consensus 256 ~~~~~-~~~~~~~~~---~~~~~l~~~-l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR-~~~~~~~~~ 327 (858)
..... ........+ ++.+.+... ..++.-++|+|+++.. +.+..++..+........+|++|. ...+.....
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 10000 000011122 222222211 2456679999999865 467788777765445555555554 344443333
Q ss_pred CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHH
Q 037627 328 ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLA 378 (858)
Q Consensus 328 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pla 378 (858)
.....+.+.+++.++..+.+.+.+...+... .++....|++.++|.+.-
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~--e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIENVQY--DQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCChHHH
Confidence 3336799999999999999988775543322 256778899999999854
No 72
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=2.2e-06 Score=90.98 Aligned_cols=200 Identities=12% Similarity=0.145 Sum_probs=117.1
Q ss_pred cCCceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccC--CcceEEEEEeCCCCCHHHHHHHHH
Q 037627 174 IEGNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKN--KFDRCAWVSVSQDYDTKDLLLRII 251 (858)
Q Consensus 174 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~--~f~~~~wv~~~~~~~~~~~~~~i~ 251 (858)
....++|.+...+.+...+..+. -...+.|+|+.|+||||+|+.+++...-.. .+... ....+.......+.+.
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~ 96 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIA 96 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHH
Confidence 44678999999999999887653 345789999999999999999887311100 01111 1111111222333333
Q ss_pred Hhcc-------ccccchh---hhhccHHHHHHHHHHHh-----cCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEE
Q 037627 252 RSFK-------INVLTRE---LEEMREEDLERYLHNCL-----QGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVI 314 (858)
Q Consensus 252 ~~l~-------~~~~~~~---~~~~~~~~~~~~l~~~l-----~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~il 314 (858)
..-. .+..... ......+++.. +.+.+ .++.-++|+|+++.. .....++..+.....+..+|
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~-l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fi 175 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAITVDEIRR-VGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFI 175 (351)
T ss_pred cCCCCCEEEeecccccccccccccCCHHHHHH-HHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEE
Confidence 2211 0000000 01223444432 33333 356679999999865 34566776665544455555
Q ss_pred EEe-CchhHHhhcCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 037627 315 ITT-RIKEVAERSDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVL 382 (858)
Q Consensus 315 vTt-R~~~~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 382 (858)
++| +...+..........+.+.+++.++..+++.+...... ..++.+..|++.++|.|.....+
T Consensus 176 Lit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~----~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 176 LISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG----SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred EEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 444 44333333333347899999999999999987432211 11345678999999999865544
No 73
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=3.5e-06 Score=92.98 Aligned_cols=186 Identities=16% Similarity=0.178 Sum_probs=110.2
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCC-------------------cceEEEEE
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNK-------------------FDRCAWVS 236 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-------------------f~~~~wv~ 236 (858)
+++||.+...+.+...+..+. -.+.+.++|++|+||||+|+.+++...-... +..++.++
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~ 92 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELD 92 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEe
Confidence 468999888887777776543 3356899999999999999999873211100 00111222
Q ss_pred eCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHH-HhcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEE
Q 037627 237 VSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHN-CLQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRV 313 (858)
Q Consensus 237 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~i 313 (858)
.+....... ...+.+.+.. ...+++-++|+|+++.. +..+.+...+........+
T Consensus 93 aa~~~gid~----------------------iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 93 AASNRGIDE----------------------IRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred CcccCCHHH----------------------HHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 111111110 1111111111 12356679999999865 3456666666554444555
Q ss_pred EEEeCc-hhHHhhcCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCC-hHHHHHHHhHh
Q 037627 314 IITTRI-KEVAERSDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGL-PLAIVVLGGLL 386 (858)
Q Consensus 314 lvTtR~-~~~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~-Plai~~~~~~l 386 (858)
|++|.+ ..+..........+.+.+++.++....+.+.+.......+ ++....|++.++|. +.++..+-.+.
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~--~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID--REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 544443 3444444444478999999999999999887754432222 46678889888655 56666665533
No 74
>PLN03025 replication factor C subunit; Provisional
Probab=98.55 E-value=9.4e-07 Score=93.85 Aligned_cols=181 Identities=17% Similarity=0.170 Sum_probs=105.7
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcc-eEEEEEeCCCCCHHHHHHHHHHhc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFD-RCAWVSVSQDYDTKDLLLRIIRSF 254 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l 254 (858)
.+++|.+..++.+..++..+. .+.+.++|++|+||||+|+.+++.. ....|. .++-++.+..... +.++.+++.+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~-~~vr~~i~~~ 88 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGI-DVVRNKIKMF 88 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccH-HHHHHHHHHH
Confidence 457898888888887766543 4557899999999999999998731 122222 1221222221111 1122222111
Q ss_pred cccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh--hHHHHHhhCCCCCCCcEEEEEeCch-hHHhhcCCCCc
Q 037627 255 KINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE--TWESLKRAFPDNKNGSRVIITTRIK-EVAERSDENAY 331 (858)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~--~~~~l~~~l~~~~~gs~ilvTtR~~-~~~~~~~~~~~ 331 (858)
..... ....++.-++|+|+++... ....+...+......+++|+++... .+.........
T Consensus 89 ~~~~~-----------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 89 AQKKV-----------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred Hhccc-----------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 00000 0002456799999998663 3344555444434456777766443 22221222226
Q ss_pred eeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHH
Q 037627 332 AHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAI 379 (858)
Q Consensus 332 ~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 379 (858)
.+++.++++++....+...+...+...+ ++....|++.++|....+
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~i~--~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVPYV--PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 7899999999999999888765443322 456788999999887443
No 75
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.55 E-value=6e-09 Score=104.04 Aligned_cols=227 Identities=20% Similarity=0.199 Sum_probs=128.3
Q ss_pred eeeeccCCccccccccCCCC---CccccccCCcccceEeccCCcc----cccCc-------ccccCCCCcEEeccccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCY---NLPEEMVKLVNLKYLRLTNAHI----DVIPS-------CIAKLQRLQTLDISGNMAF 626 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~---~lp~~~~~l~~L~~L~L~~n~i----~~lp~-------~l~~l~~L~~L~L~~n~~~ 626 (858)
..++|+||. ++.. .+.+.+.+.++|+..++++--. ..+|+ .+...++|++||||.|-+.
T Consensus 33 ~~l~lsgnt-------~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 33 TKLDLSGNT-------FGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred EEEeccCCc-------hhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 678888887 4411 2334566777888888876322 24453 3445678999999998555
Q ss_pred cccchhhhccccccccccccccccCCCCCccccccceeeccccc---------------ccCcccccCCCeeEEeecccc
Q 037627 627 MELPREICELKELRHLIGNFTGTLNIENLSNLQTLKYVERGSWA---------------EINPEKLVNLRDLRIISKYQE 691 (858)
Q Consensus 627 ~~lp~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~---------------~~~~~~l~~L~~L~l~~~~~~ 691 (858)
..-+..|..+ ++++++|++|.+.+|.... ......-++|+.+....|...
T Consensus 106 ~~g~~~l~~l---------------l~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 106 PKGIRGLEEL---------------LSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred ccchHHHHHH---------------HHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 4444443321 2233444444444443110 001223345666665555422
Q ss_pred c----ccchhhhhcCCCCCeEEeeccCCccccC---CCCCCCCCCccEEEecccCCC------CChhhhhccCCccEEEE
Q 037627 692 E----EFSFKSIAYLKNLQLLSIRLSDDTCFDS---LQPLSDCSYLIDLRLSGKIEK------LPEDLHEVLPNLECLSL 758 (858)
Q Consensus 692 ~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~------~p~~~~~~l~~L~~L~L 758 (858)
. ... ..+...+.|+.+.+..|.+..-+. ...+..+++|+.|+|..|.-. +...+.. +++|+.|++
T Consensus 171 n~ga~~~A-~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s-~~~L~El~l 248 (382)
T KOG1909|consen 171 NGGATALA-EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSS-WPHLRELNL 248 (382)
T ss_pred cccHHHHH-HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcc-cchheeecc
Confidence 1 122 455666778888887776543321 123567788888888876311 1222223 478888888
Q ss_pred ecccCCCCCcccc-----CCCCCCCeeEeeccccCCceE---EECCCCccccceeeecCCC
Q 037627 759 KKSHLKEDPMPKL-----EKLPNLTILDLGLKSYGGKKM---ICTTKGFHLLEILQLIDLN 811 (858)
Q Consensus 759 ~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~~~~~~~---~~~~~~~~~L~~L~l~~~~ 811 (858)
++|.+.......+ ...|+|+.|.|.+|.++.... .......|.|+.|++++|.
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 8888765433332 247888888888887764321 1122347788888888754
No 76
>PRK08727 hypothetical protein; Validated
Probab=98.53 E-value=1.6e-06 Score=87.25 Aligned_cols=147 Identities=18% Similarity=0.104 Sum_probs=89.2
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNC 278 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 278 (858)
...+.|+|.+|+|||+|++.+++. .......+.|+++.+. ...+. +.+..
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~~------~~~~~---------------------~~~~~- 90 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQAA------AGRLR---------------------DALEA- 90 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHHh------hhhHH---------------------HHHHH-
Confidence 356999999999999999999873 3333335667764321 11100 11111
Q ss_pred hcCceEEEEEEcCCChh---hHH-HHHhhCCC-CCCCcEEEEEeCchhH---------HhhcCCCCceeecCCCChhHHH
Q 037627 279 LQGKSYLVVVDDAWQKE---TWE-SLKRAFPD-NKNGSRVIITTRIKEV---------AERSDENAYAHKLRFLRSDESW 344 (858)
Q Consensus 279 l~~~~~LlvlDd~~~~~---~~~-~l~~~l~~-~~~gs~ilvTtR~~~~---------~~~~~~~~~~~~l~~L~~~e~~ 344 (858)
+ .+.-+||+||++... .|. .+...+.. ...|..||+|++...- ....... ..+++.+++.++-.
T Consensus 91 l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~-~~~~l~~~~~e~~~ 168 (233)
T PRK08727 91 L-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQC-IRIGLPVLDDVARA 168 (233)
T ss_pred H-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcC-ceEEecCCCHHHHH
Confidence 1 233489999997442 233 23322221 1235569999985421 1111112 57899999999999
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHH
Q 037627 345 ELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAI 379 (858)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 379 (858)
+++.+++.......+ ++...-|++.++|..-.+
T Consensus 169 ~iL~~~a~~~~l~l~--~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 169 AVLRERAQRRGLALD--EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHHHHcCCCCC--HHHHHHHHHhCCCCHHHH
Confidence 999987765433222 567788888888776554
No 77
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=2.5e-06 Score=91.76 Aligned_cols=192 Identities=14% Similarity=0.100 Sum_probs=109.7
Q ss_pred CceeeccccHHHHHHHHhcCCC--------CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHH
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEP--------RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLL 247 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 247 (858)
++++|-+.-++.+..++..+.. -.+.+.++|++|+|||++|+.++.. .-..... ..+.......
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~--l~c~~~~------~~~Cg~C~~C 76 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAA--LQCTDPD------EPGCGECRAC 76 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCCCC------CCCCCCCHHH
Confidence 4588999999999998876531 3567889999999999999998762 1110000 0011111111
Q ss_pred HHHHHhcccccc--chhhhhccHHHHHHHHHHH----hcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCc
Q 037627 248 LRIIRSFKINVL--TRELEEMREEDLERYLHNC----LQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRI 319 (858)
Q Consensus 248 ~~i~~~l~~~~~--~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~ 319 (858)
+.+...-..... ..+......+++.+.+... ..+++-++|+|+++.. .....+...+.....+..+|++|.+
T Consensus 77 ~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 77 RTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECC
Confidence 111111000000 0000111223332222211 1345568889999865 3456677777655556666666655
Q ss_pred h-hHHhhcCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 037627 320 K-EVAERSDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVL 382 (858)
Q Consensus 320 ~-~~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 382 (858)
. .+...+......+.+.+++.++..+.+.+... . . ++.+..++..++|.|.....+
T Consensus 157 ~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~--~--~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 157 PEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG--V--D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred hHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC--C--C---HHHHHHHHHHcCCCHHHHHHH
Confidence 4 44433333347899999999999988875321 1 1 355788999999999654433
No 78
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.53 E-value=3.6e-06 Score=91.55 Aligned_cols=182 Identities=13% Similarity=0.145 Sum_probs=113.1
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCcccc--------------------CCcceEEEE
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVK--------------------NKFDRCAWV 235 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~--------------------~~f~~~~wv 235 (858)
..++|.+..++.+..++..+. -.+.+.++|++|+||||+|+.++....-. .+++ ++++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~~~~ 91 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-VIEI 91 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEe
Confidence 468999999999999886543 34578899999999999999887631100 0111 1222
Q ss_pred EeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHH-hcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcE
Q 037627 236 SVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNC-LQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSR 312 (858)
Q Consensus 236 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ 312 (858)
+....... +.+++ +.+.+... ..+++-++|+|+++.. .....+...+......+.
T Consensus 92 ~~~~~~~~-~~~~~---------------------l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 92 DAASNNGV-DDIRE---------------------ILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred eccccCCH-HHHHH---------------------HHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 22111110 11111 22221111 2245568999999765 456677777765555677
Q ss_pred EEEEeCchh-HHhhcCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHHH
Q 037627 313 VIITTRIKE-VAERSDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVLG 383 (858)
Q Consensus 313 ilvTtR~~~-~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 383 (858)
+|++|.+.. +..........+++.+++.++..+++...+...+...+ ++.+..|++.++|.|..+....
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~--~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE--DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCChHHHHHHH
Confidence 777765543 23222222367889999999999999887754443222 4677889999999996655443
No 79
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.52 E-value=1.6e-06 Score=98.11 Aligned_cols=197 Identities=14% Similarity=0.149 Sum_probs=115.7
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
.++||-+.-++.|...+..+. -...+.++|+.|+||||+|+.+++...-...+ ...++......+.|...-.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~-------~~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI-------TATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC-------CCCCCCCCHHHHHHHcCCC
Confidence 568999999999988887653 23457899999999999999998731111000 0011111222222221100
Q ss_pred cccc-chhhhhccHHHHHHHHHH----HhcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCch-hHHhhcC
Q 037627 256 INVL-TRELEEMREEDLERYLHN----CLQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRIK-EVAERSD 327 (858)
Q Consensus 256 ~~~~-~~~~~~~~~~~~~~~l~~----~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~-~~~~~~~ 327 (858)
.... .........+++.+.+.. -..++.-++|||+++.. .....++..+.......++|++|.+. .+...+.
T Consensus 88 ~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~ 167 (647)
T PRK07994 88 VDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 (647)
T ss_pred CCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHH
Confidence 0000 000001122232222221 12466779999999865 46777777776655566666655544 3332222
Q ss_pred CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 037627 328 ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVL 382 (858)
Q Consensus 328 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 382 (858)
.....+.+.+++.++..+.+.+.+....... .++....|++.++|.+.-+..+
T Consensus 168 SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~--e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 168 SRCLQFHLKALDVEQIRQQLEHILQAEQIPF--EPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hhheEeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 3347899999999999999988764333222 2456688999999988744443
No 80
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.52 E-value=1.3e-06 Score=88.07 Aligned_cols=170 Identities=14% Similarity=0.137 Sum_probs=97.5
Q ss_pred eeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccc
Q 037627 179 VGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINV 258 (858)
Q Consensus 179 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 258 (858)
.|...+.......+.......+.+.|+|++|+|||+||+.+++... ... ..+.+++...... .+
T Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~~------~~-------- 85 (227)
T PRK08903 22 AGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPLL------AF-------- 85 (227)
T ss_pred cCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhHH------HH--------
Confidence 4655555444444433333456889999999999999999997321 122 2345555432110 00
Q ss_pred cchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh--hHHHHHhhCCCC-CCCc-EEEEEeCchhHHh--------hc
Q 037627 259 LTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE--TWESLKRAFPDN-KNGS-RVIITTRIKEVAE--------RS 326 (858)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~--~~~~l~~~l~~~-~~gs-~ilvTtR~~~~~~--------~~ 326 (858)
... ...-+||+||++... .-..+...+... ..+. .+|+|++...... ..
T Consensus 86 ------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~ 146 (227)
T PRK08903 86 ------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRL 146 (227)
T ss_pred ------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHH
Confidence 011 223478999997543 222333333221 1233 4667766543221 11
Q ss_pred CCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhHh
Q 037627 327 DENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVLGGLL 386 (858)
Q Consensus 327 ~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l 386 (858)
.. ...+.+.++++++-.+++.+.+....... -++..+.|++.+.|++..+..+...+
T Consensus 147 ~~-~~~i~l~pl~~~~~~~~l~~~~~~~~v~l--~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 147 GW-GLVYELKPLSDADKIAALKAAAAERGLQL--ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred hc-CeEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 11 15789999999988887776543333222 25677888899999998877665544
No 81
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.51 E-value=4.2e-06 Score=81.59 Aligned_cols=89 Identities=12% Similarity=0.141 Sum_probs=63.9
Q ss_pred CceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCch-hHHhhcCCCCceeecCCCChhHHHHHHHHHhcCCCCC
Q 037627 281 GKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRIK-EVAERSDENAYAHKLRFLRSDESWELFCEKAFRKSNG 357 (858)
Q Consensus 281 ~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~-~~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~ 357 (858)
+.+-++|+||++.. +..+.+...+......+.+|++|++. .+..........+.+.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g-i-- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G-I-- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C-C--
Confidence 55678999999865 35677887777655667777777654 222222223368999999999999999876 1 1
Q ss_pred ChhHHHHHHHHHHHcCCChH
Q 037627 358 SEGLEKLGREMVEKCRGLPL 377 (858)
Q Consensus 358 ~~~~~~~~~~I~~~~~G~Pl 377 (858)
. ++.+..|++.++|.|.
T Consensus 170 ~---~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 S---EEAAELLLALAGGSPG 186 (188)
T ss_pred C---HHHHHHHHHHcCCCcc
Confidence 1 4668899999999985
No 82
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=1.6e-06 Score=94.73 Aligned_cols=203 Identities=10% Similarity=0.111 Sum_probs=115.5
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEE-eCCCCCHHHHHHHHHHhc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVS-VSQDYDTKDLLLRIIRSF 254 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l 254 (858)
++++|.+.-++.+..++..+. -...+.++|+.|+||||+|+.+++...-...++...|.. ...+.......+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 568999988888888886553 234588999999999999999987321111111111110 011111222222222211
Q ss_pred ccccc-chhhhhccHHHHHHHHHHH----hcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEe-CchhHHhhc
Q 037627 255 KINVL-TRELEEMREEDLERYLHNC----LQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITT-RIKEVAERS 326 (858)
Q Consensus 255 ~~~~~-~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTt-R~~~~~~~~ 326 (858)
..... .........+++.+..... ..+.+-++|+|+++.. +.++.+...+....+.+.+|++| +...+....
T Consensus 95 ~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl 174 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI 174 (397)
T ss_pred CCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHH
Confidence 11000 0000111123333322221 2345668999999865 46778888877666667666655 433333322
Q ss_pred CCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHH
Q 037627 327 DENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVV 381 (858)
Q Consensus 327 ~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~ 381 (858)
......+++.+++.++..+.+...+...... -.++.+..|++.++|.+--+..
T Consensus 175 ~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~--i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 175 ASRCQRFNFKRIPLEEIQQQLQGICEAEGIS--VDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 2222578999999999999888876443322 2256788999999998864433
No 83
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.50 E-value=9.4e-07 Score=82.61 Aligned_cols=123 Identities=18% Similarity=0.123 Sum_probs=71.7
Q ss_pred eeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccc
Q 037627 179 VGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINV 258 (858)
Q Consensus 179 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 258 (858)
+|++..++.+...+... ..+.+.|+|++|+|||++++.+++. ....-..+++++.............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----- 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLVVAELFGHF----- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhhhHHHHHhhhh-----
Confidence 47888888888888654 3568999999999999999999984 22222346666655433221111110000
Q ss_pred cchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh--h---hHHHHHhhCCCC---CCCcEEEEEeCchh
Q 037627 259 LTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK--E---TWESLKRAFPDN---KNGSRVIITTRIKE 321 (858)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~---~~~~l~~~l~~~---~~gs~ilvTtR~~~ 321 (858)
............++.+||+||++.. . .+..+...+... ..+..+|+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011111223456789999999854 2 223333333221 35778888887553
No 84
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.50 E-value=1.7e-06 Score=97.18 Aligned_cols=197 Identities=14% Similarity=0.133 Sum_probs=112.5
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
+++||.+..++.|..++..+. -.+.+.++|+.|+||||+|+.++....-.... -+ ..+......+.+...-.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~---~~----~pCg~C~sCr~i~~g~~ 87 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQ---HG----EPCGVCQSCTQIDAGRY 87 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCC---CC----CCCcccHHHHHHhccCc
Confidence 568999999999999887653 34578999999999999999998731111100 00 00000111111111000
Q ss_pred ccc-cchhhhhccHHHHHHHHHHH----hcCceEEEEEEcCCChh--hHHHHHhhCCCCCCCcEEEEEeCch-hHHhhcC
Q 037627 256 INV-LTRELEEMREEDLERYLHNC----LQGKSYLVVVDDAWQKE--TWESLKRAFPDNKNGSRVIITTRIK-EVAERSD 327 (858)
Q Consensus 256 ~~~-~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~~--~~~~l~~~l~~~~~gs~ilvTtR~~-~~~~~~~ 327 (858)
... ..........+.+.+.+... ..+++-++|+|+++... ....++..+.......++|++|.+. .+.....
T Consensus 88 ~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIr 167 (709)
T PRK08691 88 VDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVL 167 (709)
T ss_pred cceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHH
Confidence 000 00000011122222222211 23566799999998653 4566676665544566677766544 2222211
Q ss_pred CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 037627 328 ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVL 382 (858)
Q Consensus 328 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 382 (858)
.....+.+.+++.++....+.+.+...+... .++....|++.++|.+.-+..+
T Consensus 168 SRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i--d~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 168 SRCLQFVLRNMTAQQVADHLAHVLDSEKIAY--EPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred HHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHhCCCHHHHHHH
Confidence 2225688899999999999988776544322 2467789999999998544433
No 85
>PRK05642 DNA replication initiation factor; Validated
Probab=98.50 E-value=1.6e-06 Score=87.25 Aligned_cols=154 Identities=19% Similarity=0.278 Sum_probs=92.6
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNC 278 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 278 (858)
...+.|+|..|+|||.|++.+++. ....-..++|++..+ +... ... +.+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~------------------~~~----~~~~ 94 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR------------------GPE----LLDN 94 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh------------------hHH----HHHh
Confidence 367899999999999999999873 222223567776532 1110 011 1222
Q ss_pred hcCceEEEEEEcCCCh---hhHHH-HHhhCCC-CCCCcEEEEEeCchhHHh---------hcCCCCceeecCCCChhHHH
Q 037627 279 LQGKSYLVVVDDAWQK---ETWES-LKRAFPD-NKNGSRVIITTRIKEVAE---------RSDENAYAHKLRFLRSDESW 344 (858)
Q Consensus 279 l~~~~~LlvlDd~~~~---~~~~~-l~~~l~~-~~~gs~ilvTtR~~~~~~---------~~~~~~~~~~l~~L~~~e~~ 344 (858)
+.+-. +||+||++.. ..|+. +...+.. ...|..+|+|++.....- ....+ ..+++.++++++-.
T Consensus 95 ~~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~g-l~~~l~~~~~e~~~ 172 (234)
T PRK05642 95 LEQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLA-LVFQMRGLSDEDKL 172 (234)
T ss_pred hhhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcC-eeeecCCCCHHHHH
Confidence 22222 6889999733 34443 4444332 123567888887543211 11111 56889999999999
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhHh
Q 037627 345 ELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVLGGLL 386 (858)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l 386 (858)
+++..++.......+ +++..-|++++.|..-.+..+-..|
T Consensus 173 ~il~~ka~~~~~~l~--~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 173 RALQLRASRRGLHLT--DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHHHHHcCCCCC--HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999866654432222 5677888888888876665554433
No 86
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=3.9e-06 Score=92.07 Aligned_cols=194 Identities=18% Similarity=0.181 Sum_probs=113.4
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
.++||.+..++.+...+..+. -.+.+.++|+.|+||||+|+.++.. +...... -..++........|.....
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~--LnC~~~~-----~~~pCg~C~~C~~i~~~~~ 84 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLC--LNCSNGP-----TSDPCGTCHNCISIKNSNH 84 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHH--HcCcCCC-----CCCCccccHHHHHHhccCC
Confidence 568999988888888776553 3457899999999999999998752 1000000 0001111112222211111
Q ss_pred cccc-chhhhhccHHHHHHHHHHH----hcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCc-hhHHhhcC
Q 037627 256 INVL-TRELEEMREEDLERYLHNC----LQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRI-KEVAERSD 327 (858)
Q Consensus 256 ~~~~-~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~-~~~~~~~~ 327 (858)
.... ....+....+++.+.+... ..++.-++|+|+++.. +.+..+...+....+.+++|++|.. ..+.....
T Consensus 85 ~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~ 164 (491)
T PRK14964 85 PDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTII 164 (491)
T ss_pred CCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHH
Confidence 0000 0000011122222211111 2355668999999855 4577787777766667777766643 34443333
Q ss_pred CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHH
Q 037627 328 ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAI 379 (858)
Q Consensus 328 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 379 (858)
.....+.+.+++.++..+.+.+.+...+...+ ++....|++.++|.+..+
T Consensus 165 SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~--~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 165 SRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD--EESLKLIAENSSGSMRNA 214 (491)
T ss_pred HhheeeecccccHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 33478999999999999999988765543322 566788999999988643
No 87
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=2.9e-06 Score=90.56 Aligned_cols=198 Identities=13% Similarity=0.098 Sum_probs=115.0
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEE----EEEeCCCCCHHHHHHHH
Q 037627 175 EGNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCA----WVSVSQDYDTKDLLLRI 250 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~----wv~~~~~~~~~~~~~~i 250 (858)
-.+++|.+...+.+.+.+..+. -...+.++|+.|+||+|+|..+++..--........ -.++. ........+.+
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~~c~~c~~i 95 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDPDHPVARRI 95 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCCCChHHHHH
Confidence 3578999999999999887653 345688999999999999998876311111000000 00000 00001122222
Q ss_pred HHhcccccc----c---hhh----hhccHHHHHHHHHHHh-----cCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcE
Q 037627 251 IRSFKINVL----T---REL----EEMREEDLERYLHNCL-----QGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSR 312 (858)
Q Consensus 251 ~~~l~~~~~----~---~~~----~~~~~~~~~~~l~~~l-----~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ 312 (858)
... ..+.. + +.. .....+++.+. .+.+ .+.+.++|+|+++.. .....+...+.....++.
T Consensus 96 ~~~-~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l-~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~ 173 (365)
T PRK07471 96 AAG-AHGGLLTLERSWNEKGKRLRTVITVDEVREL-ISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSL 173 (365)
T ss_pred Hcc-CCCCeEEEecccccccccccccccHHHHHHH-HHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeE
Confidence 211 11100 0 000 11234443332 2332 256779999999855 456677777766555666
Q ss_pred EEEEeCch-hHHhhcCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 037627 313 VIITTRIK-EVAERSDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVL 382 (858)
Q Consensus 313 ilvTtR~~-~~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 382 (858)
+|++|.+. .+..........+.+.+++.++..+++.+..... . .+....+++.++|.|.....+
T Consensus 174 ~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~---~---~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 174 FLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL---P---DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC---C---HHHHHHHHHHcCCCHHHHHHH
Confidence 77777655 3333333444789999999999999998764221 1 222367899999999865544
No 88
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=3e-06 Score=94.59 Aligned_cols=196 Identities=14% Similarity=0.111 Sum_probs=112.6
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
+++||-+..++.|..++..+. -.....++|+.|+||||+|+.++....-...+. ..++........|...-.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-------~~pCg~C~~C~~i~~g~~ 87 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVS-------ANPCNDCENCREIDEGRF 87 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------cccCCCCHHHHHHhcCCC
Confidence 468999999999999987653 244678999999999999999987321111110 001111111111111000
Q ss_pred cccc-chhhhhccHHHHHHHHHHH----hcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCch-hHHhhcC
Q 037627 256 INVL-TRELEEMREEDLERYLHNC----LQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRIK-EVAERSD 327 (858)
Q Consensus 256 ~~~~-~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~-~~~~~~~ 327 (858)
.... .........+++.+.+... ..++.-++|+|+++.. +.+..++..+......+++|++|.+. .+.....
T Consensus 88 ~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~ 167 (509)
T PRK14958 88 PDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVL 167 (509)
T ss_pred ceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHH
Confidence 0000 0000111222222222211 1355668999999865 45677777777666667777665443 3332222
Q ss_pred CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHH
Q 037627 328 ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVV 381 (858)
Q Consensus 328 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~ 381 (858)
.....+++++++.++....+.+.+...+...+ ++....|++.++|.+.-+..
T Consensus 168 SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~--~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 168 SRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE--NAALDLLARAANGSVRDALS 219 (509)
T ss_pred HHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHHHH
Confidence 22367899999999998888777654433222 45677899999998854433
No 89
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.45 E-value=1.6e-06 Score=96.43 Aligned_cols=198 Identities=13% Similarity=0.154 Sum_probs=113.6
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
..++|++..++.+..++..+. -.+.+.++|+.|+||||+|+.+++... ... |... .++......+.+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~-C~~-----~~~~-~~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAIN-CLN-----PKDG-DCCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhc-CCC-----CCCC-CCCcccHHHHHHHcCCC
Confidence 568999999999999886653 346788999999999999999987311 111 2111 11222222222222111
Q ss_pred cccc-chhhhhccHHHHHH---HHHHH-hcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeC-chhHHhhcC
Q 037627 256 INVL-TRELEEMREEDLER---YLHNC-LQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTR-IKEVAERSD 327 (858)
Q Consensus 256 ~~~~-~~~~~~~~~~~~~~---~l~~~-l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR-~~~~~~~~~ 327 (858)
.... .........+++.. .+... ..+++-++|+|+++.. +.+..+...+...+..+.+|++|. ...+.....
T Consensus 88 ~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~ 167 (605)
T PRK05896 88 VDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTII 167 (605)
T ss_pred CceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHH
Confidence 0000 00000111222222 11111 1234457999999864 456777777665555666665553 333333222
Q ss_pred CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChH-HHHHHH
Q 037627 328 ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPL-AIVVLG 383 (858)
Q Consensus 328 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~~ 383 (858)
.....+++.+++.++....+...+...+...+ ++.+..|++.++|.+. |+..+-
T Consensus 168 SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is--~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 168 SRCQRYNFKKLNNSELQELLKSIAKKEKIKIE--DNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred hhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHHHHHHH
Confidence 23368999999999999999887654432222 4567889999999775 444443
No 90
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=2.9e-09 Score=103.47 Aligned_cols=112 Identities=21% Similarity=0.118 Sum_probs=58.6
Q ss_pred hhcCCCCCeEEeeccCCccccCCCCC-CCCCCccEEEeccc---CCC-CChhhhhccCCccEEEEeccc-CCCCCccccC
Q 037627 699 IAYLKNLQLLSIRLSDDTCFDSLQPL-SDCSYLIDLRLSGK---IEK-LPEDLHEVLPNLECLSLKKSH-LKEDPMPKLE 772 (858)
Q Consensus 699 l~~l~~L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~---~~~-~p~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~ 772 (858)
+.+++.|..|+|++|.......-... .--++|..|+|+|+ +.. --..+...+|+|..|||++|. ++......|.
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~ 335 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 335 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH
Confidence 34455555555555543221100001 11235666667663 211 111223336888888888774 3333344566
Q ss_pred CCCCCCeeEeeccccCCceEEECCCCccccceeeecCC
Q 037627 773 KLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDL 810 (858)
Q Consensus 773 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~ 810 (858)
+++.|++|.|+.|...........+..|+|.+|++.+|
T Consensus 336 kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 77777777777665433333344556777777777765
No 91
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=5.5e-06 Score=93.60 Aligned_cols=200 Identities=14% Similarity=0.170 Sum_probs=115.7
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCc--ceEEEEEeCCCCCHHHHHHHHHHh
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKF--DRCAWVSVSQDYDTKDLLLRIIRS 253 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~ 253 (858)
+++||-+..++.|..++..+. -...+.++|+.|+||||+|+.+++...-.... .+.. ..++......+.|...
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~----~~pCg~C~~C~~i~~g 90 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT----ATPCGVCQACRDIDSG 90 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC----CCCCCccHHHHHHHcC
Confidence 568998888888888887653 34567899999999999999997631110000 0000 0111222222222110
Q ss_pred cccccc-chhhhhccHHHHHHHHHHH----hcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCc-hhHHhh
Q 037627 254 FKINVL-TRELEEMREEDLERYLHNC----LQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRI-KEVAER 325 (858)
Q Consensus 254 l~~~~~-~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~-~~~~~~ 325 (858)
-..... .........+++.+.+... ..++.-++|||+++.. +.+..++..+.......++|++|.+ ..+...
T Consensus 91 ~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~T 170 (618)
T PRK14951 91 RFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVT 170 (618)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHH
Confidence 000000 0000111233333333221 1244568999999865 4677788777765556666665543 333332
Q ss_pred cCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 037627 326 SDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVL 382 (858)
Q Consensus 326 ~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 382 (858)
.......+.+++++.++..+.+.+.+...+...+ ++....|++.++|.+.-+..+
T Consensus 171 IlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie--~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 171 VLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE--PQALRLLARAARGSMRDALSL 225 (618)
T ss_pred HHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHH
Confidence 2233378999999999999999887755443222 466788999999988555443
No 92
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.41 E-value=4.2e-06 Score=96.80 Aligned_cols=171 Identities=19% Similarity=0.208 Sum_probs=98.0
Q ss_pred CceeeccccHH---HHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHH
Q 037627 176 GNVVGFDDDVS---KLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIR 252 (858)
Q Consensus 176 ~~~vGr~~~~~---~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 252 (858)
++|+|.+..+. .+.+.+... ....+.|+|++|+||||||+.+++ ....+|. .++.. .... ..
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f~---~lna~--~~~i---~d--- 92 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIAN--HTRAHFS---SLNAV--LAGV---KD--- 92 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHH--HhcCcce---eehhh--hhhh---HH---
Confidence 46889888774 455555443 355788999999999999999997 3444441 11111 0000 00
Q ss_pred hccccccchhhhhccHHHHHHHHHHHh--cCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEE--eCchh--HHh
Q 037627 253 SFKINVLTRELEEMREEDLERYLHNCL--QGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIIT--TRIKE--VAE 324 (858)
Q Consensus 253 ~l~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvT--tR~~~--~~~ 324 (858)
.........+.+ .+++.+|+|||++.. ...+.+...+. .|..++++ |.+.. +..
T Consensus 93 ---------------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 93 ---------------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred ---------------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 011111111111 246779999999854 34555655443 24445543 34331 222
Q ss_pred hcCCCCceeecCCCChhHHHHHHHHHhcCC-----CCCChhHHHHHHHHHHHcCCChHHH
Q 037627 325 RSDENAYAHKLRFLRSDESWELFCEKAFRK-----SNGSEGLEKLGREMVEKCRGLPLAI 379 (858)
Q Consensus 325 ~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~-----~~~~~~~~~~~~~I~~~~~G~Plai 379 (858)
........+.+++++.++...++.+.+... .....-.++....|++.+.|..-.+
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence 222223578999999999999998876410 1111222566788888998876433
No 93
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.40 E-value=3.3e-06 Score=84.84 Aligned_cols=176 Identities=17% Similarity=0.166 Sum_probs=104.0
Q ss_pred CcCCceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHH
Q 037627 173 SIEGNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIR 252 (858)
Q Consensus 173 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 252 (858)
+..++++|-+.-+..+++ ++....+.+||++|+||||||+.++.. .+.+ ...||..+.......-++.|++
T Consensus 141 vGQ~hlv~q~gllrs~ie-----q~~ipSmIlWGppG~GKTtlArlia~t--sk~~--SyrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 141 VGQSHLVGQDGLLRSLIE-----QNRIPSMILWGPPGTGKTTLARLIAST--SKKH--SYRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred cchhhhcCcchHHHHHHH-----cCCCCceEEecCCCCchHHHHHHHHhh--cCCC--ceEEEEEeccccchHHHHHHHH
Confidence 334455555444433333 245778899999999999999999984 3333 2456766655444444444444
Q ss_pred hccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChhhHHHHHhhCCCCCCCcEEEE--EeCchhHHh--hcCC
Q 037627 253 SFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKETWESLKRAFPDNKNGSRVII--TTRIKEVAE--RSDE 328 (858)
Q Consensus 253 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~~~~--~~~~ 328 (858)
+... ...+.+++.+|.+|+++.-...++ -.++|....|.-++| ||-++.... ..-.
T Consensus 212 ~aq~-------------------~~~l~krkTilFiDEiHRFNksQQ-D~fLP~VE~G~I~lIGATTENPSFqln~aLlS 271 (554)
T KOG2028|consen 212 QAQN-------------------EKSLTKRKTILFIDEIHRFNKSQQ-DTFLPHVENGDITLIGATTENPSFQLNAALLS 271 (554)
T ss_pred HHHH-------------------HHhhhcceeEEEeHHhhhhhhhhh-hcccceeccCceEEEecccCCCccchhHHHHh
Confidence 3211 112457899999999975432111 123455556776665 777664321 1122
Q ss_pred CCceeecCCCChhHHHHHHHHHhc--CCC----CCCh-----hHHHHHHHHHHHcCCChH
Q 037627 329 NAYAHKLRFLRSDESWELFCEKAF--RKS----NGSE-----GLEKLGREMVEKCRGLPL 377 (858)
Q Consensus 329 ~~~~~~l~~L~~~e~~~l~~~~~~--~~~----~~~~-----~~~~~~~~I~~~~~G~Pl 377 (858)
...++.|++|+.++...++.+... .+. .+-+ ....+.+-++..|.|-..
T Consensus 272 RC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 272 RCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred ccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 236899999999999999887432 111 1111 223456667778888764
No 94
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=8.3e-06 Score=88.80 Aligned_cols=180 Identities=16% Similarity=0.184 Sum_probs=106.8
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCcccc------CCcce-EEEEEeCCCCCHHHHHH
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVK------NKFDR-CAWVSVSQDYDTKDLLL 248 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~------~~f~~-~~wv~~~~~~~~~~~~~ 248 (858)
.+++|.+...+.+...+..+. -.+.+.++|++|+||||+|+.+++...-. ..|.. ++-++...... .+.++
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~i~ 94 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNS-VDDIR 94 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCC-HHHHH
Confidence 468999999999999887643 34688999999999999999998731110 11111 11111100000 01111
Q ss_pred HHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeC-chhHHhh
Q 037627 249 RIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTR-IKEVAER 325 (858)
Q Consensus 249 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR-~~~~~~~ 325 (858)
+++..+.. .-..+++-++++|+++.. ..+..+...+......+.+|+++. ...+...
T Consensus 95 ~l~~~~~~--------------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 95 NLIDQVRI--------------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred HHHHHHhh--------------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 11111100 011245568999999754 346677666655444555665553 3333222
Q ss_pred cCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHH
Q 037627 326 SDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAI 379 (858)
Q Consensus 326 ~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 379 (858)
.......++..+++.++....+...+...+...+ ++.+..|++.++|.+-.+
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~--~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE--DDALHIIAQKADGALRDA 206 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhCCCCHHHH
Confidence 2222357899999999999999887755443222 467788999999977543
No 95
>PRK09087 hypothetical protein; Validated
Probab=98.38 E-value=4.9e-06 Score=82.92 Aligned_cols=143 Identities=12% Similarity=0.061 Sum_probs=87.6
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNC 278 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 278 (858)
.+.+.|+|++|+|||+|++.++.. . ...+++.. .+...++. .
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~--~-----~~~~i~~~------~~~~~~~~-------------------------~ 85 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK--S-----DALLIHPN------EIGSDAAN-------------------------A 85 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh--c-----CCEEecHH------HcchHHHH-------------------------h
Confidence 467999999999999999999873 1 12233321 11111110 1
Q ss_pred hcCceEEEEEEcCCChh-hHHHHHhhCCC-CCCCcEEEEEeCch---------hHHhhcCCCCceeecCCCChhHHHHHH
Q 037627 279 LQGKSYLVVVDDAWQKE-TWESLKRAFPD-NKNGSRVIITTRIK---------EVAERSDENAYAHKLRFLRSDESWELF 347 (858)
Q Consensus 279 l~~~~~LlvlDd~~~~~-~~~~l~~~l~~-~~~gs~ilvTtR~~---------~~~~~~~~~~~~~~l~~L~~~e~~~l~ 347 (858)
+.+ -+|++||++... .-+.+...+.. ...|..+|+|++.+ ......... ..++++++++++-.+++
T Consensus 86 ~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~g-l~~~l~~pd~e~~~~iL 162 (226)
T PRK09087 86 AAE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAA-TVVEIGEPDDALLSQVI 162 (226)
T ss_pred hhc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCC-ceeecCCCCHHHHHHHH
Confidence 111 278889996431 11223333321 12256688888743 222222333 68999999999999999
Q ss_pred HHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHHHh
Q 037627 348 CEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVLGG 384 (858)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~ 384 (858)
.+.+.......+ +++..-|++++.|..-++..+..
T Consensus 163 ~~~~~~~~~~l~--~ev~~~La~~~~r~~~~l~~~l~ 197 (226)
T PRK09087 163 FKLFADRQLYVD--PHVVYYLVSRMERSLFAAQTIVD 197 (226)
T ss_pred HHHHHHcCCCCC--HHHHHHHHHHhhhhHHHHHHHHH
Confidence 998866443322 57788899988888877665433
No 96
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.37 E-value=7.6e-06 Score=90.28 Aligned_cols=169 Identities=12% Similarity=0.082 Sum_probs=102.1
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNC 278 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 278 (858)
..-+.|+|..|+|||+|++.+++.......-..+++++. .++...+...+.... ...+.+.+.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~-----------~~~~~~~~~ 203 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKTH-----------KEIEQFKNE 203 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHhh-----------hHHHHHHHH
Confidence 456899999999999999999883211111123455543 456666665543210 112233333
Q ss_pred hcCceEEEEEEcCCChh---h-HHHHHhhCCC-CCCCcEEEEEeCchh---------HHhhcCCCCceeecCCCChhHHH
Q 037627 279 LQGKSYLVVVDDAWQKE---T-WESLKRAFPD-NKNGSRVIITTRIKE---------VAERSDENAYAHKLRFLRSDESW 344 (858)
Q Consensus 279 l~~~~~LlvlDd~~~~~---~-~~~l~~~l~~-~~~gs~ilvTtR~~~---------~~~~~~~~~~~~~l~~L~~~e~~ 344 (858)
+. ..-+||+||+.... . .+.+...+.. ...|..||+|+.... +......+ ..+.+.+++.++-.
T Consensus 204 ~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~G-l~~~L~~pd~e~r~ 281 (450)
T PRK14087 204 IC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMG-LSIAIQKLDNKTAT 281 (450)
T ss_pred hc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCC-ceeccCCcCHHHHH
Confidence 33 34488899997432 2 2334333332 123446888876432 11222222 57789999999999
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhHh
Q 037627 345 ELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVLGGLL 386 (858)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l 386 (858)
+++.+.+........-.+++..-|++.++|.|..+..+...+
T Consensus 282 ~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 282 AIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 999998865432112336788899999999998877665433
No 97
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=7.5e-06 Score=92.15 Aligned_cols=197 Identities=14% Similarity=0.160 Sum_probs=111.0
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
+++||-+..++.+..++..+. -...+.++|+.|+||||+|+.++....-.... . ..+.........+...-.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~------~-~~pcg~C~~C~~i~~~~~ 87 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGV------T-ATPCGVCSACLEIDSGRF 87 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCC------C-CCCCCCCHHHHHHhcCCC
Confidence 468999999999988887643 23567899999999999999998632111000 0 001111111111110000
Q ss_pred cccc-chhhhhccHHHHHHHHHHH----hcCceEEEEEEcCCChh--hHHHHHhhCCCCCCCcEEEEEeCch-hHHhhcC
Q 037627 256 INVL-TRELEEMREEDLERYLHNC----LQGKSYLVVVDDAWQKE--TWESLKRAFPDNKNGSRVIITTRIK-EVAERSD 327 (858)
Q Consensus 256 ~~~~-~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~~--~~~~l~~~l~~~~~gs~ilvTtR~~-~~~~~~~ 327 (858)
.... .........+++.+.+... ..+++-++|+|+++... ....+...+......+.+|++|.+. .+.....
T Consensus 88 ~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~ 167 (527)
T PRK14969 88 VDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVL 167 (527)
T ss_pred CceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHH
Confidence 0000 0000011122222222111 23566799999998663 4677777777655566676666443 2221111
Q ss_pred CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChH-HHHHH
Q 037627 328 ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPL-AIVVL 382 (858)
Q Consensus 328 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~ 382 (858)
.....+++++++.++..+.+.+.+...+... .++....|++.++|.+. |+..+
T Consensus 168 SRc~~~~f~~l~~~~i~~~L~~il~~egi~~--~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 168 SRCLQFNLKQMPPPLIVSHLQHILEQENIPF--DATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 1126789999999999998887764433222 24567889999999885 34433
No 98
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.35 E-value=7e-06 Score=88.96 Aligned_cols=176 Identities=13% Similarity=0.154 Sum_probs=101.8
Q ss_pred cCCceeeccccHHHHHHHHhcC-----------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCC
Q 037627 174 IEGNVVGFDDDVSKLLAKLLNK-----------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYD 242 (858)
Q Consensus 174 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 242 (858)
..+++.|++..++++.+.+..+ -...+-+.|+|++|+|||++|+.+++ .....| +.+.
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~-----~~v~---- 188 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF-----IRVV---- 188 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE-----Eecc----
Confidence 3457899999999998877432 12345699999999999999999998 444443 2221
Q ss_pred HHHHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh-------------h---hHHHHHhhCCC
Q 037627 243 TKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK-------------E---TWESLKRAFPD 306 (858)
Q Consensus 243 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-------------~---~~~~l~~~l~~ 306 (858)
...+.... .+ . ....+...+...-...+.+|++||++.. + .+..+...+..
T Consensus 189 ~~~l~~~~---~g-~---------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~ 255 (364)
T TIGR01242 189 GSELVRKY---IG-E---------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDG 255 (364)
T ss_pred hHHHHHHh---hh-H---------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhC
Confidence 11111110 00 0 0111122222222346789999998743 1 12233333322
Q ss_pred --CCCCcEEEEEeCchhHHh-hcC---CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCCh
Q 037627 307 --NKNGSRVIITTRIKEVAE-RSD---ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLP 376 (858)
Q Consensus 307 --~~~gs~ilvTtR~~~~~~-~~~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 376 (858)
...+.+||.||....... ... .....+.+...+.++..++|..++........ -....+++.+.|..
T Consensus 256 ~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~s 328 (364)
T TIGR01242 256 FDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGAS 328 (364)
T ss_pred CCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCC
Confidence 234677888887543221 111 11256889999999999999987755432211 12466777777764
No 99
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=1.2e-05 Score=90.30 Aligned_cols=201 Identities=13% Similarity=0.150 Sum_probs=115.5
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
+++||-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++...-....+ ...+......+.+.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHHHHHhcCCC
Confidence 467898888888888776542 346788999999999999999987421111000 011222222222222111
Q ss_pred cccc-chhhhhccHHHHH---HHHHH-HhcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCc-hhHHhhcC
Q 037627 256 INVL-TRELEEMREEDLE---RYLHN-CLQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRI-KEVAERSD 327 (858)
Q Consensus 256 ~~~~-~~~~~~~~~~~~~---~~l~~-~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~-~~~~~~~~ 327 (858)
.... .........+++. +.+.. -..+++-+||+|+++.. +.+..|...+........+|++|.+ ..+.....
T Consensus 88 pDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~ 167 (624)
T PRK14959 88 VDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIV 167 (624)
T ss_pred CceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHH
Confidence 0000 0000001122221 11111 12356679999999865 4567777777654445556665544 34433322
Q ss_pred CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCCh-HHHHHHHhHh
Q 037627 328 ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLP-LAIVVLGGLL 386 (858)
Q Consensus 328 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P-lai~~~~~~l 386 (858)
.....+++.+++.++....+.+.+....... .++.+..|++.++|.+ .|+..+...+
T Consensus 168 SRcq~i~F~pLs~~eL~~~L~~il~~egi~i--d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 168 SRCQHFTFTRLSEAGLEAHLTKVLGREGVDY--DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhhhccccCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2236789999999999999988765443222 2467788999999976 5666665443
No 100
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.3e-05 Score=91.11 Aligned_cols=200 Identities=11% Similarity=0.127 Sum_probs=114.7
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEE-eCCCCCHHHHHHHHHHhc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVS-VSQDYDTKDLLLRIIRSF 254 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l 254 (858)
.++||.+..++.+..++..+. -...+.++|+.|+||||+|+.+++...-....+...|.. ...+.......+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 568999999999888886542 345688999999999999999987321111111111211 111222222233322211
Q ss_pred ccccc-chhhhhccHHHHHHHHHHH----hcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEe-CchhHHhhc
Q 037627 255 KINVL-TRELEEMREEDLERYLHNC----LQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITT-RIKEVAERS 326 (858)
Q Consensus 255 ~~~~~-~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTt-R~~~~~~~~ 326 (858)
..... .+.......+++.+.+... ..+.+-++|+|+++.. ...+.|...+......+.+|++| +...+....
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI 174 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI 174 (620)
T ss_pred CCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHH
Confidence 11000 0000111233443332222 2355668999999865 35677888777655566665555 433443333
Q ss_pred CCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHH
Q 037627 327 DENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLA 378 (858)
Q Consensus 327 ~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pla 378 (858)
......+++.+++.++....+.+.+...+... .++.+..|++.++|..--
T Consensus 175 ~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I--~~eal~~La~~s~Gdlr~ 224 (620)
T PRK14954 175 ASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI--DADALQLIARKAQGSMRD 224 (620)
T ss_pred HhhceEEecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCHHH
Confidence 33337899999999999988887665433222 256778899999997653
No 101
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=1.6e-05 Score=90.13 Aligned_cols=201 Identities=14% Similarity=0.161 Sum_probs=117.9
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcc--eEEEEEeCCCCCHHHHHHHHHH
Q 037627 175 EGNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFD--RCAWVSVSQDYDTKDLLLRIIR 252 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~ 252 (858)
-.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++...-..... ...+ .........+.|..
T Consensus 23 f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~i~~ 97 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQAIME 97 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHHHhc
Confidence 3578999999999999887653 345788999999999999999987421111100 0000 01111122223322
Q ss_pred hcccccc-chhhhhccHHHHHHHHHHH----hcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEe-CchhHHh
Q 037627 253 SFKINVL-TRELEEMREEDLERYLHNC----LQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITT-RIKEVAE 324 (858)
Q Consensus 253 ~l~~~~~-~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTt-R~~~~~~ 324 (858)
....... .........+++.+.+... ..+++-++|+|+++.. ...+.|...+......+.+|++| ....+..
T Consensus 98 g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 98 GRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhH
Confidence 1111000 0000112233333222111 2345568999999865 35677777776666667776655 3334333
Q ss_pred hcCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 037627 325 RSDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVL 382 (858)
Q Consensus 325 ~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 382 (858)
........+.+.+++.++....+.+.+.......+ ++.+..|++.++|.+.-+...
T Consensus 178 tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~--~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 178 TVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE--DEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHH
Confidence 33333368999999999999999887754443222 467788999999998655443
No 102
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.31 E-value=9.2e-06 Score=80.67 Aligned_cols=182 Identities=16% Similarity=0.203 Sum_probs=101.0
Q ss_pred eeecccc-HHHHHHHHhcC-CCCcEEEEEEecCcchHHHHHHHHhcCccccCC--cceEEEEEeCCCCCHHHHHHHHHHh
Q 037627 178 VVGFDDD-VSKLLAKLLNK-EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNK--FDRCAWVSVSQDYDTKDLLLRIIRS 253 (858)
Q Consensus 178 ~vGr~~~-~~~l~~~L~~~-~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~i~~~ 253 (858)
++|-..+ .-.....+... +.....+.|+|..|+|||.|.+++++. .... -..+++++. .++...+...
T Consensus 11 v~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~~------~~f~~~~~~~ 82 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLSA------EEFIREFADA 82 (219)
T ss_dssp --TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEEH------HHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeecH------HHHHHHHHHH
Confidence 3564333 23344444443 333456899999999999999999983 3322 124666654 4455555544
Q ss_pred ccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh---hHHH-HHhhCCC-CCCCcEEEEEeCchh-------
Q 037627 254 FKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE---TWES-LKRAFPD-NKNGSRVIITTRIKE------- 321 (858)
Q Consensus 254 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~---~~~~-l~~~l~~-~~~gs~ilvTtR~~~------- 321 (858)
+... .. ..++..++ .-=+|++||++... .|++ +...+.. ...|-+||+|++...
T Consensus 83 ~~~~---------~~----~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~ 148 (219)
T PF00308_consen 83 LRDG---------EI----EEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLL 148 (219)
T ss_dssp HHTT---------SH----HHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-
T ss_pred HHcc---------cc----hhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccC
Confidence 3321 11 12233333 33488999997542 2332 2222221 123567999996542
Q ss_pred --HHhhcCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHHHh
Q 037627 322 --VAERSDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVLGG 384 (858)
Q Consensus 322 --~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~ 384 (858)
.......+ ..+++.+.++++..+++.+.+......-+ ++++.-|++.+.+..-.+..+-.
T Consensus 149 ~~L~SRl~~G-l~~~l~~pd~~~r~~il~~~a~~~~~~l~--~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 149 PDLRSRLSWG-LVVELQPPDDEDRRRILQKKAKERGIELP--EEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp HHHHHHHHCS-EEEEE----HHHHHHHHHHHHHHTT--S---HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred hhhhhhHhhc-chhhcCCCCHHHHHHHHHHHHHHhCCCCc--HHHHHHHHHhhcCCHHHHHHHHH
Confidence 11222222 67999999999999999998876655433 56777888888877766555443
No 103
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=2.2e-05 Score=87.06 Aligned_cols=197 Identities=12% Similarity=0.118 Sum_probs=113.7
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
+++||-+...+.+...+..+. -.+...++|+.|+||||+|+.++...--....+. .+.........+.....
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~-------~pC~~C~~C~~~~~~~h 85 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS-------TPCDTCIQCQSALENRH 85 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCC-------CCCcccHHHHHHhhcCC
Confidence 468998888888888886553 3456789999999999999988763110000000 00000011111111000
Q ss_pred cccc-chhhhhccHHHHHHHHHHH----hcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCch-hHHhhcC
Q 037627 256 INVL-TRELEEMREEDLERYLHNC----LQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRIK-EVAERSD 327 (858)
Q Consensus 256 ~~~~-~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~-~~~~~~~ 327 (858)
.... .........+++.+.+... ..+++-++|+|+++.. +....++..+......+++|++|.+. .+.....
T Consensus 86 ~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~ 165 (535)
T PRK08451 86 IDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATIL 165 (535)
T ss_pred CeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHH
Confidence 0000 0000001123333333221 1245668999999865 45667777776656667777777654 2222222
Q ss_pred CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 037627 328 ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVL 382 (858)
Q Consensus 328 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 382 (858)
.....+++.+++.++..+.+.+.+...+...+ ++.+..|++.++|.+.-+...
T Consensus 166 SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~--~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 166 SRTQHFRFKQIPQNSIISHLKTILEKEGVSYE--PEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred hhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHHHHH
Confidence 22378999999999999999887765443222 567889999999999555444
No 104
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.31 E-value=8.7e-08 Score=105.94 Aligned_cols=193 Identities=28% Similarity=0.354 Sum_probs=98.2
Q ss_pred ccccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhcccccccc---ccccccccCCCCCccccc
Q 037627 584 EEMVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELRHL---IGNFTGTLNIENLSNLQT 660 (858)
Q Consensus 584 ~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L---~~~~~~~~~~~~l~~L~~ 660 (858)
..++.+.+|.+|++.+|.|..+...+..+++|++|++++| .++.+.. +..++.|+.| .|.+.....+..+++|+.
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~ 166 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELNLSGNLISDISGLESLKSLKL 166 (414)
T ss_pred cccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccc-hhhccchhhheeccCcchhccCCccchhhhc
Confidence 3466677777777777777777554667777777777777 4444322 3444444444 233333444555666666
Q ss_pred cceeecccccccC--cccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCC--ccEEEec
Q 037627 661 LKYVERGSWAEIN--PEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSY--LIDLRLS 736 (858)
Q Consensus 661 L~l~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~--L~~L~l~ 736 (858)
+++++|....... ...+.+++.+.+.+|...... .+..+..+..+++..|.+..+ ..+..+.. |+.++++
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~---~~~~~~~l~~~~l~~n~i~~~---~~l~~~~~~~L~~l~l~ 240 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGNSIREIE---GLDLLKKLVLLSLLDNKISKL---EGLNELVMLHLRELYLS 240 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCCchhccc---chHHHHHHHHhhcccccceec---cCcccchhHHHHHHhcc
Confidence 6666666555554 355666666666666543332 222233333334444433322 22222222 5566666
Q ss_pred cc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeecccc
Q 037627 737 GK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSY 787 (858)
Q Consensus 737 ~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~ 787 (858)
++ +...+..+.. +.++..|++.+|.+.. ...+...+.+..+.++.|.+
T Consensus 241 ~n~i~~~~~~~~~-~~~l~~l~~~~n~~~~--~~~~~~~~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 241 GNRISRSPEGLEN-LKNLPVLDLSSNRISN--LEGLERLPKLSELWLNDNKL 289 (414)
T ss_pred cCccccccccccc-cccccccchhhccccc--cccccccchHHHhccCcchh
Confidence 54 3333223333 4556666666655432 12233344444444444443
No 105
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=1.9e-05 Score=89.91 Aligned_cols=189 Identities=13% Similarity=0.108 Sum_probs=109.4
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
..++|.+..++.+..++..+. -.+...++|+.|+||||+|+.++...- ..+.. ....+....... .+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~Ln-C~~~~--------~~~~pC~~C~~~---~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALN-CSHKT--------DLLEPCQECIEN---VN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhc-ccccC--------CCCCchhHHHHh---hc
Confidence 468899999999999887653 345678999999999999999986311 10100 000000001000 00
Q ss_pred cccc---chhhhhccHH---HHHHHHHHH-hcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEe-CchhHHhh
Q 037627 256 INVL---TRELEEMREE---DLERYLHNC-LQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITT-RIKEVAER 325 (858)
Q Consensus 256 ~~~~---~~~~~~~~~~---~~~~~l~~~-l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTt-R~~~~~~~ 325 (858)
.... .........+ ++.+.+... ..+++-++|+|+++.. +.+..++..+...+....+|++| +...+...
T Consensus 85 ~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred CCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 0000 0000001122 222222211 2356679999999855 46777777776655555555444 44444433
Q ss_pred cCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHH
Q 037627 326 SDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAI 379 (858)
Q Consensus 326 ~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 379 (858)
.......+++.+++.++..+.+...+...+...+ .+.+..|++.++|.+.-+
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id--~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENISYE--KNALKLIAKLSSGSLRDA 216 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 3333368999999999999998876544332222 456788999999977533
No 106
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.30 E-value=3.2e-07 Score=70.54 Aligned_cols=59 Identities=37% Similarity=0.553 Sum_probs=36.6
Q ss_pred CccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeecccc
Q 037627 729 YLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSY 787 (858)
Q Consensus 729 ~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~ 787 (858)
+|++|++++| +..+|...+..+++|+.|+|++|.++...+..|.++++|++|++++|.+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5566666664 5555554444456677777776666655666666666777776666653
No 107
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.29 E-value=8.5e-06 Score=93.52 Aligned_cols=204 Identities=18% Similarity=0.180 Sum_probs=109.1
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCc---ceEEEEEeCCC---CCHHHHHHH
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKF---DRCAWVSVSQD---YDTKDLLLR 249 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f---~~~~wv~~~~~---~~~~~~~~~ 249 (858)
+.++|++..++.+.+.+... ....+.|+|++|+||||+|+.+++.......+ ...-|+.+... .+...+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ 231 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNP 231 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHH
Confidence 46899999999988877543 35579999999999999999998643222222 12334444321 122222111
Q ss_pred HH---------------Hhccccc--------------cchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh--hhHH
Q 037627 250 II---------------RSFKINV--------------LTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK--ETWE 298 (858)
Q Consensus 250 i~---------------~~l~~~~--------------~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~ 298 (858)
++ ...+... ..++.+..+ ......+.+.+..+++.++-|+.|.. ..|+
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~ 310 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPK 310 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCcccch
Confidence 11 1111000 001111111 22345566666667777766555533 3456
Q ss_pred HHHhhCCCCCCCcEEEE--EeCchh-HHhhcCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCC
Q 037627 299 SLKRAFPDNKNGSRVII--TTRIKE-VAERSDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGL 375 (858)
Q Consensus 299 ~l~~~l~~~~~gs~ilv--TtR~~~-~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 375 (858)
.+...+....+...+++ ||++.. +..........+.+.+++.+|.++++.+.+....... .++..+.|.+.+..-
T Consensus 311 ~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l--s~eal~~L~~ys~~g 388 (615)
T TIGR02903 311 YIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL--AAGVEELIARYTIEG 388 (615)
T ss_pred hhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHCCCcH
Confidence 66555554444444444 556442 1111112225678999999999999998765432111 134445555555444
Q ss_pred hHHHHHHHh
Q 037627 376 PLAIVVLGG 384 (858)
Q Consensus 376 Plai~~~~~ 384 (858)
+-++..++.
T Consensus 389 Rraln~L~~ 397 (615)
T TIGR02903 389 RKAVNILAD 397 (615)
T ss_pred HHHHHHHHH
Confidence 555554443
No 108
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=2.8e-05 Score=87.70 Aligned_cols=199 Identities=15% Similarity=0.114 Sum_probs=114.7
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
+++||.+..++.|..++..+. -...+.++|+.|+||||+|+.++....-....+ ..++......+.+...-.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-------~~pCg~C~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPT-------ATPCGVCESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-------CCcccccHHHHHhhcccC
Confidence 468999999999999887653 344678999999999999999987311101000 001111112222211100
Q ss_pred cccc---chhhhhccHHH---HHHHHHHH-hcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeC-chhHHhh
Q 037627 256 INVL---TRELEEMREED---LERYLHNC-LQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTR-IKEVAER 325 (858)
Q Consensus 256 ~~~~---~~~~~~~~~~~---~~~~l~~~-l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR-~~~~~~~ 325 (858)
.... .........++ +.+.+... ..++.-++|+|+++.. +....|+..+........+|++|. ...+...
T Consensus 85 ~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~T 164 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPT 164 (584)
T ss_pred CCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHH
Confidence 0000 00000011222 22222111 2355669999999855 467778877776666666665554 3444433
Q ss_pred cCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChH-HHHHHHh
Q 037627 326 SDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPL-AIVVLGG 384 (858)
Q Consensus 326 ~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~~~ 384 (858)
.......+.+.+++.++..+.+.+.+...+...+ ++....|++.++|.+. ++..+-.
T Consensus 165 I~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~--~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 165 IRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD--DAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred HHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3333378999999999999998887655443222 4566789999999885 4444433
No 109
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.27 E-value=6.2e-07 Score=99.13 Aligned_cols=72 Identities=31% Similarity=0.474 Sum_probs=59.6
Q ss_pred eeeeccCCccccccccCCCCCccccccCCc-ccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLV-NLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKEL 639 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~-~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L 639 (858)
..|++.++. +. .+|.....+. +|+.|++++|.+..+|..+..+++|+.|++++| .+..+|...+.+++|
T Consensus 119 ~~L~l~~n~-------i~--~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L 188 (394)
T COG4886 119 TSLDLDNNN-------IT--DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNL 188 (394)
T ss_pred eEEecCCcc-------cc--cCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhh
Confidence 778888888 77 8888888885 999999999999999888999999999999999 667777655555555
Q ss_pred ccc
Q 037627 640 RHL 642 (858)
Q Consensus 640 ~~L 642 (858)
+.|
T Consensus 189 ~~L 191 (394)
T COG4886 189 NNL 191 (394)
T ss_pred hhe
Confidence 555
No 110
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=1.3e-05 Score=91.86 Aligned_cols=198 Identities=13% Similarity=0.099 Sum_probs=116.5
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
+++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++. +.... +-.....+......+.+.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~--l~c~~----~~~~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKA--VNCTT----NDPKGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHH--hcCCC----CCCCCCCCccCHHHHHHhcCCC
Confidence 478999999999988887553 3456789999999999999999873 21100 0000111222333444433221
Q ss_pred cccc-chhhhhccHHHHHHHH---HHH-hcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCc-hhHHhhcC
Q 037627 256 INVL-TRELEEMREEDLERYL---HNC-LQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRI-KEVAERSD 327 (858)
Q Consensus 256 ~~~~-~~~~~~~~~~~~~~~l---~~~-l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~-~~~~~~~~ 327 (858)
.... .........+++.+.+ ... ..+++-++|+|+++.. +..+.|...+......+.+|+++.+ ..+.....
T Consensus 89 ~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~ 168 (585)
T PRK14950 89 VDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATIL 168 (585)
T ss_pred CeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHH
Confidence 1100 0000111222222222 111 1245679999999855 4567777777665556666666543 33333222
Q ss_pred CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 037627 328 ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVL 382 (858)
Q Consensus 328 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 382 (858)
.....+.+.+++.++....+...+...+...+ ++.+..|++.++|.+..+...
T Consensus 169 SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~--~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 169 SRCQRFDFHRHSVADMAAHLRKIAAAEGINLE--PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred hccceeeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHH
Confidence 23367889999999999998887755443222 467789999999999655443
No 111
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=2.1e-05 Score=92.35 Aligned_cols=194 Identities=12% Similarity=0.057 Sum_probs=113.4
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++...-..... ...+......+.|...-.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~-------~~pCg~C~sC~~~~~g~~ 86 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPT-------STPCGECDSCVALAPGGP 86 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCC-------CCCCcccHHHHHHHcCCC
Confidence 468999999999999887653 235678999999999999999987421111100 001111111222211100
Q ss_pred cccc---chhhhhccHHHHHHHHHH----HhcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCc-hhHHhh
Q 037627 256 INVL---TRELEEMREEDLERYLHN----CLQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRI-KEVAER 325 (858)
Q Consensus 256 ~~~~---~~~~~~~~~~~~~~~l~~----~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~-~~~~~~ 325 (858)
.... .........+++.+.... -..++.-++|||+++.. +.++.|+..+..-...+.+|++|.+ ..+...
T Consensus 87 ~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~T 166 (824)
T PRK07764 87 GSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGT 166 (824)
T ss_pred CCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 0000 000001122333221111 12355668999999865 4677788888776667767665543 344433
Q ss_pred cCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHH
Q 037627 326 SDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAI 379 (858)
Q Consensus 326 ~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 379 (858)
+......+++..++.++..+++.+.+....... ..+....|++.++|.+..+
T Consensus 167 IrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i--d~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 167 IRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV--EPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred HHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 333347899999999999998888664433221 2455678999999988433
No 112
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.27 E-value=1.6e-05 Score=81.05 Aligned_cols=170 Identities=18% Similarity=0.204 Sum_probs=108.8
Q ss_pred CCceeeccccHHHHHHHHhcCCC-CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHh
Q 037627 175 EGNVVGFDDDVSKLLAKLLNKEP-RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRS 253 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~~~~-~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 253 (858)
++.|.+|+.+++.+...+...+. -+..|.|+|.+|.|||.+.+++.+.. .. ..+|+++-+.++....+.+|+.+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--CC---cceeeehHHhccHHHHHHHHHHH
Confidence 46788999999999998876654 34566999999999999999999843 22 36899999999999999999999
Q ss_pred cc-ccccchhhhh--ccHHHHHHHHHH--Hhc--CceEEEEEEcCCChhhHHH-----HHhhCC-CCCCCcEEEEEeCch
Q 037627 254 FK-INVLTRELEE--MREEDLERYLHN--CLQ--GKSYLVVVDDAWQKETWES-----LKRAFP-DNKNGSRVIITTRIK 320 (858)
Q Consensus 254 l~-~~~~~~~~~~--~~~~~~~~~l~~--~l~--~~~~LlvlDd~~~~~~~~~-----l~~~l~-~~~~gs~ilvTtR~~ 320 (858)
.+ .+.++...+. .........+.+ ... ++.++||+|+++...+.+. +...-. ...+.. +|+++-..
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i-~iils~~~ 158 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTI-VIILSAPS 158 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCce-EEEEeccc
Confidence 85 3333222222 222333444444 222 4589999999987654332 211100 011222 34444332
Q ss_pred hHHhhc---CCC-CceeecCCCChhHHHHHHHHH
Q 037627 321 EVAERS---DEN-AYAHKLRFLRSDESWELFCEK 350 (858)
Q Consensus 321 ~~~~~~---~~~-~~~~~l~~L~~~e~~~l~~~~ 350 (858)
...... +.. ..++....-+.+|...++.+.
T Consensus 159 ~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 159 CEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 222211 211 146777888999998888653
No 113
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=3.8e-05 Score=85.35 Aligned_cols=183 Identities=15% Similarity=0.107 Sum_probs=110.3
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccc--cC-----------------CcceEEEEE
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDV--KN-----------------KFDRCAWVS 236 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~--~~-----------------~f~~~~wv~ 236 (858)
..++|.+.-.+.+..++..+. -.+...++|+.|+||||+|+.++....- .. .+..+++++
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eid 94 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEID 94 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEe
Confidence 468899999999999887653 3456778999999999999998863110 00 011111121
Q ss_pred eCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHH-hcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEE
Q 037627 237 VSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNC-LQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRV 313 (858)
Q Consensus 237 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~i 313 (858)
.+..... .+...+.+.+... ..+++-++|+|+++.. +..+.+...+....+...+
T Consensus 95 aas~~gv----------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 95 AASNRGI----------------------DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred CccCCCH----------------------HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 1110000 0011222222111 2356679999999855 3566777777665555556
Q ss_pred EEEe-CchhHHhhcCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHHH
Q 037627 314 IITT-RIKEVAERSDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVLG 383 (858)
Q Consensus 314 lvTt-R~~~~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 383 (858)
|++| +...+..........+.+.+++.++....+...+...+... .++.+..|++.++|.+..+....
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i--d~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY--EEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 5555 43333332222236789999999999999988765544322 24667889999999876544443
No 114
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.26 E-value=3.3e-06 Score=84.81 Aligned_cols=96 Identities=13% Similarity=0.055 Sum_probs=62.3
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCC--CCHHHHHHHHHHhcccccc--chhhhhccHHHHHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQD--YDTKDLLLRIIRSFKINVL--TRELEEMREEDLER 273 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~~~ 273 (858)
....++|+|++|+|||||++.++++.... +|+..+|+.+... .+..++++.+...+-.... +......-......
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999964433 8999999987665 7888999988333222211 01111111112222
Q ss_pred HHHHH-hcCceEEEEEEcCCCh
Q 037627 274 YLHNC-LQGKSYLVVVDDAWQK 294 (858)
Q Consensus 274 ~l~~~-l~~~~~LlvlDd~~~~ 294 (858)
..... -.++++++++|++...
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 22222 2588999999999643
No 115
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.25 E-value=1.1e-07 Score=105.08 Aligned_cols=239 Identities=24% Similarity=0.194 Sum_probs=153.7
Q ss_pred cCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhcccccccc---ccccccccCCCCCccccccce
Q 037627 587 VKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELRHL---IGNFTGTLNIENLSNLQTLKY 663 (858)
Q Consensus 587 ~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L---~~~~~~~~~~~~l~~L~~L~l 663 (858)
..+..++.++++.|.+..+-..+..+.+|+.|++.+| .+..+...+..+++|++| +|.+....++..++.|+.|++
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNL 147 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeecccc-chhhcccchhhhhcchheeccccccccccchhhccchhhhee
Confidence 4567788888999999886566888999999999999 555554446778888888 345555667777888888888
Q ss_pred eecccccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCC
Q 037627 664 VERGSWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKL 742 (858)
Q Consensus 664 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~ 742 (858)
++|.+.....+..+.+|+.+++.+|......... +..+.+++.+.+..|....+ ..+..+..+..+++..| +..+
T Consensus 148 ~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i---~~~~~~~~l~~~~l~~n~i~~~ 223 (414)
T KOG0531|consen 148 SGNLISDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI---EGLDLLKKLVLLSLLDNKISKL 223 (414)
T ss_pred ccCcchhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc---cchHHHHHHHHhhcccccceec
Confidence 8888877777777888888888887754442201 46777888888877765543 23333334444455554 2211
Q ss_pred ChhhhhccCC--ccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECCCCccccceeeecCCCCCCeE---E
Q 037627 743 PEDLHEVLPN--LECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLNDLAQW---Q 817 (858)
Q Consensus 743 p~~~~~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~---~ 817 (858)
..+.. +.. |+.+++++|.+.. .+..+..++++..|++.+|.+.... ....++.+..+........... .
T Consensus 224 -~~l~~-~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (414)
T KOG0531|consen 224 -EGLNE-LVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLE---GLERLPKLSELWLNDNKLALSEAISQ 297 (414)
T ss_pred -cCccc-chhHHHHHHhcccCcccc-ccccccccccccccchhhccccccc---cccccchHHHhccCcchhcchhhhhc
Confidence 11111 233 8889999998753 2256777888889999888776532 2223444444444432211111 1
Q ss_pred Ec-cCccccccceeeccccc
Q 037627 818 VE-DGAMPILRGLRVTNAYK 836 (858)
Q Consensus 818 ~~-~~~l~~L~~L~l~~c~~ 836 (858)
.. ....+++..+.+.+++.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 298 EYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred cccccccccccccccccCcc
Confidence 11 34567777777777764
No 116
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.23 E-value=1.8e-07 Score=99.25 Aligned_cols=132 Identities=21% Similarity=0.278 Sum_probs=96.6
Q ss_pred CccccccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhccccccccc---ccc-ccccCCCCCc
Q 037627 581 NLPEEMVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELRHLI---GNF-TGTLNIENLS 656 (858)
Q Consensus 581 ~lp~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~---~~~-~~~~~~~~l~ 656 (858)
.+|..++++..|.||||+.|+++.+|..++.|+ |+.|.+++| .++.+|..++.+..|.+|+ |.+ +.+..++.+.
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~ 189 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLT 189 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHH
Confidence 788888889999999999999988888888877 888888888 7788888888778888873 222 4455677788
Q ss_pred cccccceeeccccccc-CcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCcc
Q 037627 657 NLQTLKYVERGSWAEI-NPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTC 717 (858)
Q Consensus 657 ~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 717 (858)
+|+.|++..|+..... ++. --.|.+|++++|... .+| -.|.+|++|++|-|.+|.+..
T Consensus 190 slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis-~iP-v~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 190 SLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKIS-YLP-VDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred HHHHHHHhhhhhhhCCHHHh-CCceeeeecccCcee-ecc-hhhhhhhhheeeeeccCCCCC
Confidence 8888887777744332 222 234667777777543 344 577788888888887776543
No 117
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=3.5e-05 Score=88.15 Aligned_cols=175 Identities=13% Similarity=0.161 Sum_probs=111.9
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccc---------------------cCCcceEEE
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDV---------------------KNKFDRCAW 234 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~---------------------~~~f~~~~w 234 (858)
++++|.+...+.+..++..+. -.+.+.++|+.|+||||+|+.++....- ..+|+ +..
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n-~~~ 94 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN-IHE 94 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-eEE
Confidence 468999999999999887653 3456889999999999999988763110 01122 111
Q ss_pred EEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHH----hcCceEEEEEEcCCCh--hhHHHHHhhCCCCC
Q 037627 235 VSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNC----LQGKSYLVVVDDAWQK--ETWESLKRAFPDNK 308 (858)
Q Consensus 235 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~ 308 (858)
++..... ..+++...+.+. ..+++-++|+|+++.. +.+..|...+....
T Consensus 95 ld~~~~~-------------------------~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp 149 (614)
T PRK14971 95 LDAASNN-------------------------SVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP 149 (614)
T ss_pred ecccccC-------------------------CHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCC
Confidence 2111111 122222222111 1245568899999865 45777888877666
Q ss_pred CCcEEEEEe-CchhHHhhcCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHH
Q 037627 309 NGSRVIITT-RIKEVAERSDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAI 379 (858)
Q Consensus 309 ~gs~ilvTt-R~~~~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 379 (858)
.++.+|++| ....+..........+++.+++.++....+.+.+...+...+ ++.+..|++.++|...-+
T Consensus 150 ~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~--~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 150 SYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE--PEALNVIAQKADGGMRDA 219 (614)
T ss_pred CCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 667666555 444444433333478999999999999999887655443222 456788999999977544
No 118
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=2.6e-05 Score=86.15 Aligned_cols=194 Identities=14% Similarity=0.136 Sum_probs=107.1
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
.+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+++...-...-. ...........+.+...-.
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~------~~~~c~~c~~C~~i~~~~~ 89 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTE------DQEPCNQCASCKEISSGTS 89 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCccc------CCCCCcccHHHHHHhcCCC
Confidence 578999999999998886543 245688999999999999999976311100000 0000000000000000000
Q ss_pred cccc-chhhhhccHHHHH---HHHHH-HhcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCch-hHHhhcC
Q 037627 256 INVL-TRELEEMREEDLE---RYLHN-CLQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRIK-EVAERSD 327 (858)
Q Consensus 256 ~~~~-~~~~~~~~~~~~~---~~l~~-~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~-~~~~~~~ 327 (858)
.... .........+++. +.+.. ...+.+-++|+|+++.. +..+.+...+........+|++|... .+.....
T Consensus 90 ~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~ 169 (451)
T PRK06305 90 LDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTIL 169 (451)
T ss_pred CceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHH
Confidence 0000 0000000111111 11111 11356678999999755 34566777776655566676666432 3322222
Q ss_pred CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHH
Q 037627 328 ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLA 378 (858)
Q Consensus 328 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pla 378 (858)
.....+++.++++++....+...+...+... .++.+..|++.++|.+.-
T Consensus 170 sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i--~~~al~~L~~~s~gdlr~ 218 (451)
T PRK06305 170 SRCQKMHLKRIPEETIIDKLALIAKQEGIET--SREALLPIARAAQGSLRD 218 (451)
T ss_pred HhceEEeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 2236799999999999998887765433222 246778899999998753
No 119
>PRK06620 hypothetical protein; Validated
Probab=98.19 E-value=3.1e-05 Score=76.43 Aligned_cols=137 Identities=15% Similarity=0.070 Sum_probs=81.1
Q ss_pred EEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHHh
Q 037627 200 FVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCL 279 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 279 (858)
+.+.|+|++|+|||+|++.+++.. .. .++.. ... . + +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~--~~-----~~~~~--~~~------------------------~-~-------~~~ 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS--NA-----YIIKD--IFF------------------------N-E-------EIL 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc--CC-----EEcch--hhh------------------------c-h-------hHH
Confidence 679999999999999999988732 11 12110 000 0 0 001
Q ss_pred cCceEEEEEEcCCChhhHHHHHhhCCC-CCCCcEEEEEeCchhHH-------hhcCCCCceeecCCCChhHHHHHHHHHh
Q 037627 280 QGKSYLVVVDDAWQKETWESLKRAFPD-NKNGSRVIITTRIKEVA-------ERSDENAYAHKLRFLRSDESWELFCEKA 351 (858)
Q Consensus 280 ~~~~~LlvlDd~~~~~~~~~l~~~l~~-~~~gs~ilvTtR~~~~~-------~~~~~~~~~~~l~~L~~~e~~~l~~~~~ 351 (858)
...-++++||++..++ ..+...+.. ...|..||+|++.+... .....+ .+++++++++++..+++.+.+
T Consensus 84 -~~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~g-l~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 84 -EKYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSV-LSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred -hcCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCC-ceEeeCCCCHHHHHHHHHHHH
Confidence 1234788999975432 122222211 12356789988755321 122222 479999999999998888877
Q ss_pred cCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 037627 352 FRKSNGSEGLEKLGREMVEKCRGLPLAIVVL 382 (858)
Q Consensus 352 ~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 382 (858)
.......+ +++..-|++++.|.--.+.-+
T Consensus 161 ~~~~l~l~--~ev~~~L~~~~~~d~r~l~~~ 189 (214)
T PRK06620 161 SISSVTIS--RQIIDFLLVNLPREYSKIIEI 189 (214)
T ss_pred HHcCCCCC--HHHHHHHHHHccCCHHHHHHH
Confidence 54332222 567777888887776554443
No 120
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.18 E-value=1.4e-05 Score=82.20 Aligned_cols=158 Identities=17% Similarity=0.193 Sum_probs=83.4
Q ss_pred ceeeccccHHHHHHHHhc-------------CCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCH
Q 037627 177 NVVGFDDDVSKLLAKLLN-------------KEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDT 243 (858)
Q Consensus 177 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 243 (858)
.++|.+...+++.+.... ..+....+.++|++|+||||+|+.+++.......-....++.+..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 478877777666543211 123456788999999999999999986311001001112233321
Q ss_pred HHHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh----------hhHHHHHhhCCCCCCCcEE
Q 037627 244 KDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK----------ETWESLKRAFPDNKNGSRV 313 (858)
Q Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~----------~~~~~l~~~l~~~~~gs~i 313 (858)
.++ ....... ....+...+.+. ..-+|++|+++.. +..+.+...+........+
T Consensus 83 ~~l----~~~~~g~---------~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~v 146 (261)
T TIGR02881 83 ADL----VGEYIGH---------TAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVL 146 (261)
T ss_pred HHh----hhhhccc---------hHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEE
Confidence 111 1111000 011222222222 2348999999752 2344555555544444456
Q ss_pred EEEeCchhHHh------hcC-CCCceeecCCCChhHHHHHHHHHhcCC
Q 037627 314 IITTRIKEVAE------RSD-ENAYAHKLRFLRSDESWELFCEKAFRK 354 (858)
Q Consensus 314 lvTtR~~~~~~------~~~-~~~~~~~l~~L~~~e~~~l~~~~~~~~ 354 (858)
|+++....... ... .....+.+++++.+|..+++.+.+...
T Consensus 147 ila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 147 ILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred EecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHc
Confidence 66665433211 111 111568999999999999998877543
No 121
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.17 E-value=1.7e-05 Score=84.61 Aligned_cols=146 Identities=16% Similarity=0.193 Sum_probs=85.6
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
++++|.+...+.+..++..+. -..++.++|++|+||||+|+.+++. .... ...++.+. .. .+.++..+...
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~-~~~i~~~l~~~- 91 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CR-IDFVRNRLTRF- 91 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-cc-HHHHHHHHHHH-
Confidence 568999999999998887543 3567788999999999999999873 2222 33444433 11 11111111110
Q ss_pred ccccchhhhhccHHHHHHHHHHH-hcCceEEEEEEcCCCh---hhHHHHHhhCCCCCCCcEEEEEeCchh-HHhhcCCCC
Q 037627 256 INVLTRELEEMREEDLERYLHNC-LQGKSYLVVVDDAWQK---ETWESLKRAFPDNKNGSRVIITTRIKE-VAERSDENA 330 (858)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDd~~~~---~~~~~l~~~l~~~~~gs~ilvTtR~~~-~~~~~~~~~ 330 (858)
.... +.+.+-++|+||++.. +....+...+.....+.++|+||.... +........
T Consensus 92 -------------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 92 -------------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred -------------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 0000 1234568999999855 223334444444455778888886542 111111222
Q ss_pred ceeecCCCChhHHHHHHHH
Q 037627 331 YAHKLRFLRSDESWELFCE 349 (858)
Q Consensus 331 ~~~~l~~L~~~e~~~l~~~ 349 (858)
..+.+...+.++..+++..
T Consensus 153 ~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEeCCCCHHHHHHHHHH
Confidence 4677777788877766543
No 122
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.17 E-value=3.8e-05 Score=75.31 Aligned_cols=261 Identities=18% Similarity=0.197 Sum_probs=137.2
Q ss_pred CceeeccccHHHHHHHHhcC---CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHH
Q 037627 176 GNVVGFDDDVSKLLAKLLNK---EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIR 252 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 252 (858)
.+|||.+.-++.+.-.+... +...-.+.++|++|.||||||.-+++ .....+. ++-+....-
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~k----~tsGp~leK--------- 90 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVNLK----ITSGPALEK--------- 90 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCeE----ecccccccC---------
Confidence 57999999888887766543 34567899999999999999999998 4444331 111110000
Q ss_pred hccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh-hHHHHHhh-CC--------CCCCCcEE---------
Q 037627 253 SFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE-TWESLKRA-FP--------DNKNGSRV--------- 313 (858)
Q Consensus 253 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-~~~~l~~~-l~--------~~~~gs~i--------- 313 (858)
..++...+-. |+ ..=++.+|+++... ..++++-+ +. ..++++|.
T Consensus 91 ---------------~gDlaaiLt~-Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 91 ---------------PGDLAAILTN-LE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred ---------------hhhHHHHHhc-CC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 1112222211 22 23356778887542 22222211 11 12233332
Q ss_pred --EEEeCchhHHhhcCCC-CceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhHhcCCC
Q 037627 314 --IITTRIKEVAERSDEN-AYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVLGGLLSMKK 390 (858)
Q Consensus 314 --lvTtR~~~~~~~~~~~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~~ 390 (858)
=-|||...+....... ..+.+++-.+.+|-.+++.+.+..-... -.++.+.+|+++..|-|.-..-+-+.++
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~--i~~~~a~eIA~rSRGTPRIAnRLLrRVR--- 228 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIE--IDEEAALEIARRSRGTPRIANRLLRRVR--- 228 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCC--CChHHHHHHHHhccCCcHHHHHHHHHHH---
Confidence 2488865443322221 1567889999999999998887544332 2357789999999999965444433332
Q ss_pred hHHHHHHHHHHHhhhhcC-ccchhhHHHhhhccCcHHHHHHHhHhcCCCCCceeCHHHHHHHHHHcCccccCCCCCHHHH
Q 037627 391 PQEWRRVRDHLWQHLKND-CIHISSLLNLSFRNLSHELKLCFLYLGLFPEDFEINVQTLIRLLVAEGFIQQDTDRSTEEV 469 (858)
Q Consensus 391 ~~~w~~~~~~l~~~~~~~-~~~i~~~l~~s~~~L~~~~k~~f~~la~fp~~~~i~~~~l~~~w~aeg~i~~~~~~~~~~~ 469 (858)
++..+... ..+... .......+.+-=..|+.-.+..+..+.-...+-++-.+.+.... | .+..+.|++
T Consensus 229 --Dfa~V~~~--~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~l---g----e~~~TiEdv 297 (332)
T COG2255 229 --DFAQVKGD--GDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAAL---G----EDRDTIEDV 297 (332)
T ss_pred --HHHHHhcC--CcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHh---c----CchhHHHHH
Confidence 11110000 000000 01122333333445555555555555422222244444443211 1 122334554
Q ss_pred HHHHHHHHHhcccccccc
Q 037627 470 AGEILDELINRSLIQIDK 487 (858)
Q Consensus 470 ~~~~l~~L~~~~ll~~~~ 487 (858)
.+- -|++.||++...
T Consensus 298 ~EP---yLiq~gfi~RTp 312 (332)
T COG2255 298 IEP---YLIQQGFIQRTP 312 (332)
T ss_pred HhH---HHHHhchhhhCC
Confidence 444 378889998765
No 123
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.17 E-value=2.1e-05 Score=85.50 Aligned_cols=176 Identities=13% Similarity=0.173 Sum_probs=99.2
Q ss_pred cCCceeeccccHHHHHHHHhcC-----------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCC
Q 037627 174 IEGNVVGFDDDVSKLLAKLLNK-----------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYD 242 (858)
Q Consensus 174 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 242 (858)
..+++.|++..++++.+.+..+ -...+-|.++|++|+|||++|+.+++ ..... |+.+..
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~--~~~~~-----~i~v~~--- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNAT-----FIRVVG--- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH--HhCCC-----EEEeeh---
Confidence 3457899999999998876421 12356799999999999999999998 33333 222211
Q ss_pred HHHHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh-------------hhHHHHHhh---CCC
Q 037627 243 TKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK-------------ETWESLKRA---FPD 306 (858)
Q Consensus 243 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-------------~~~~~l~~~---l~~ 306 (858)
..+ ....... ....+...+...-...+.+|+|||++.. +....+... +..
T Consensus 199 -~~l----~~~~~g~---------~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~ 264 (389)
T PRK03992 199 -SEL----VQKFIGE---------GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDG 264 (389)
T ss_pred -HHH----hHhhccc---------hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccc
Confidence 111 1111100 0111222222222356789999999753 111222222 221
Q ss_pred --CCCCcEEEEEeCchhHHh-hcC---CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCCh
Q 037627 307 --NKNGSRVIITTRIKEVAE-RSD---ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLP 376 (858)
Q Consensus 307 --~~~gs~ilvTtR~~~~~~-~~~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 376 (858)
...+..||.||....... ... .....+.+++.+.++-.++|..+......... .....+++.+.|.-
T Consensus 265 ~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~---~~~~~la~~t~g~s 337 (389)
T PRK03992 265 FDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD---VDLEELAELTEGAS 337 (389)
T ss_pred cCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc---CCHHHHHHHcCCCC
Confidence 123566777776543222 111 11257899999999999999887654432211 12355666666653
No 124
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.17 E-value=6.1e-05 Score=76.14 Aligned_cols=202 Identities=16% Similarity=0.161 Sum_probs=114.4
Q ss_pred Cceeec---cccHHHHHHHHhcC-CCCcEEEEEEecCcchHHHHHHHHhcCcccc----CCcceEEEEEeCCCCCHHHHH
Q 037627 176 GNVVGF---DDDVSKLLAKLLNK-EPRRFVISVYGMGGLGKTTLARKLYHNNDVK----NKFDRCAWVSVSQDYDTKDLL 247 (858)
Q Consensus 176 ~~~vGr---~~~~~~l~~~L~~~-~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~ 247 (858)
+..||- ...++++.+.+..+ ....+.+.|+|.+|+|||+++++++...-.. ..--.++.+......+...+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y 113 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFY 113 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHH
Confidence 345553 23445555555555 3345789999999999999999998631111 111246777888888999999
Q ss_pred HHHHHhccccccchhhhhccHHHHHHHHHHHhcC-ceEEEEEEcCCCh-----hhHHHH---HhhCCCCCCCcEEEEEeC
Q 037627 248 LRIIRSFKINVLTRELEEMREEDLERYLHNCLQG-KSYLVVVDDAWQK-----ETWESL---KRAFPDNKNGSRVIITTR 318 (858)
Q Consensus 248 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlvlDd~~~~-----~~~~~l---~~~l~~~~~gs~ilvTtR 318 (858)
..|+.+++.+..+.. ....+...+.+.++. +.-+||+|++++. ..-.++ ...+.+.-.=+-|.|-|+
T Consensus 114 ~~IL~~lgaP~~~~~----~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 114 SAILEALGAPYRPRD----RVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHhCcccCCCC----CHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 999999998864221 223333333344432 3458999999864 122222 333333333444556555
Q ss_pred chhHHhhcC----CCCceeecCCCChhH-HHHHHHHHhcCCC--CC-ChhHHHHHHHHHHHcCCChHHHHH
Q 037627 319 IKEVAERSD----ENAYAHKLRFLRSDE-SWELFCEKAFRKS--NG-SEGLEKLGREMVEKCRGLPLAIVV 381 (858)
Q Consensus 319 ~~~~~~~~~----~~~~~~~l~~L~~~e-~~~l~~~~~~~~~--~~-~~~~~~~~~~I~~~~~G~Plai~~ 381 (858)
...-+-..+ ....++.+.....++ ...|+......-. .. .-..++.+..|...++|+.--+..
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 432221111 111455666655444 4444433221111 11 112367889999999998754443
No 125
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.17 E-value=1.4e-05 Score=95.18 Aligned_cols=178 Identities=16% Similarity=0.126 Sum_probs=98.7
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCC------cceEE-EEEeCCCCCHHHHHH
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNK------FDRCA-WVSVSQDYDTKDLLL 248 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~------f~~~~-wv~~~~~~~~~~~~~ 248 (858)
+.+|||+.++++++..|.... ..-+.++|++|+||||+|+.+++. +... ....+ .++++.-..
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~l~a------ 256 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGLLQA------ 256 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhhhhc------
Confidence 579999999999999887654 345679999999999999999973 3211 11222 233321100
Q ss_pred HHHHhccccccchhhhhccHHHHHHHHHHHh-cCceEEEEEEcCCChh---------hHHH-HHhhCCCCCCCcEEEEEe
Q 037627 249 RIIRSFKINVLTRELEEMREEDLERYLHNCL-QGKSYLVVVDDAWQKE---------TWES-LKRAFPDNKNGSRVIITT 317 (858)
Q Consensus 249 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDd~~~~~---------~~~~-l~~~l~~~~~gs~ilvTt 317 (858)
.... ...-.+.+...+...- .+++.+|++|+++... +... +...+.. ...++|-||
T Consensus 257 -------g~~~----~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~IgaT 323 (852)
T TIGR03345 257 -------GASV----KGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAAT 323 (852)
T ss_pred -------cccc----chHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEec
Confidence 0000 0000112222222221 2568999999987541 1112 3333322 235666666
Q ss_pred CchhHHhh------cCCCCceeecCCCChhHHHHHHHHHhcCCCC--CChhHHHHHHHHHHHcCCCh
Q 037627 318 RIKEVAER------SDENAYAHKLRFLRSDESWELFCEKAFRKSN--GSEGLEKLGREMVEKCRGLP 376 (858)
Q Consensus 318 R~~~~~~~------~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~--~~~~~~~~~~~I~~~~~G~P 376 (858)
..++.... .......+.+++++.+++.+++......-.. .....++....+++.+.++.
T Consensus 324 T~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred CHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 65432211 1112268999999999999997654422111 11122455666777776554
No 126
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=7.4e-05 Score=84.44 Aligned_cols=196 Identities=12% Similarity=0.088 Sum_probs=114.1
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
.+++|-+..++.+..++..+. -.+...++|+.|+||||+|+.+++...-...... .+.......+.+...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~-------~pC~~C~~C~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP-------MPCGECSSCKSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC-------CCCccchHHHHHHcCCC
Confidence 468999999999999887653 3457889999999999999999874211110000 00000111111111100
Q ss_pred cccc-chhhhhccHHHHHHHH---HH-HhcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCc-hhHHhhcC
Q 037627 256 INVL-TRELEEMREEDLERYL---HN-CLQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRI-KEVAERSD 327 (858)
Q Consensus 256 ~~~~-~~~~~~~~~~~~~~~l---~~-~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~-~~~~~~~~ 327 (858)
.... .........+++.+.. .. -..+++-++|+|+++.. ..++.+...+......+.+|++|.. ..+.....
T Consensus 88 ~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~ 167 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIK 167 (563)
T ss_pred CCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHH
Confidence 0000 0000011222332222 11 12356668999999865 4577788777766666767666644 33333222
Q ss_pred CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHH
Q 037627 328 ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVV 381 (858)
Q Consensus 328 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~ 381 (858)
.....+++.+++.++..+.+.+.+...+... .++.+..|++.++|.+..+..
T Consensus 168 SRc~~~~f~~l~~~el~~~L~~i~~~egi~i--d~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 168 SRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY--EDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HhceEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHH
Confidence 2336789999999999999988775444322 256778899999998854433
No 127
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.16 E-value=5.6e-05 Score=78.38 Aligned_cols=134 Identities=16% Similarity=0.146 Sum_probs=74.4
Q ss_pred EEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHHh
Q 037627 200 FVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCL 279 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 279 (858)
..+.++|++|+|||++|+.++............-|+.++. .+ +...+.... .......+.+.
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~---------~~~~~~~~~~a- 120 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT---------APKTKEILKRA- 120 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc---------hHHHHHHHHHc-
Confidence 3688999999999999987765211111111112444431 12 222221111 11122223322
Q ss_pred cCceEEEEEEcCCCh-----------hhHHHHHhhCCCCCCCcEEEEEeCchhHHhhcCC-------CCceeecCCCChh
Q 037627 280 QGKSYLVVVDDAWQK-----------ETWESLKRAFPDNKNGSRVIITTRIKEVAERSDE-------NAYAHKLRFLRSD 341 (858)
Q Consensus 280 ~~~~~LlvlDd~~~~-----------~~~~~l~~~l~~~~~gs~ilvTtR~~~~~~~~~~-------~~~~~~l~~L~~~ 341 (858)
..-+|+||+++.. +.++.+...+.....+.+||+++........... ....+.+++++.+
T Consensus 121 --~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~e 198 (284)
T TIGR02880 121 --MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEA 198 (284)
T ss_pred --cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHH
Confidence 2358999999732 2345566666555556777777764433222111 1257899999999
Q ss_pred HHHHHHHHHhcC
Q 037627 342 ESWELFCEKAFR 353 (858)
Q Consensus 342 e~~~l~~~~~~~ 353 (858)
|..+++...+..
T Consensus 199 dl~~I~~~~l~~ 210 (284)
T TIGR02880 199 ELLVIAGLMLKE 210 (284)
T ss_pred HHHHHHHHHHHH
Confidence 999998887644
No 128
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=7.7e-05 Score=85.15 Aligned_cols=197 Identities=12% Similarity=0.129 Sum_probs=111.1
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
+++||.+...+.+..++..+. -.+.+.++|+.|+||||+|+.++....-....+ ..++........|...-.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHhcCCC
Confidence 578999988899988887653 345678999999999999999987311111000 001111111111111000
Q ss_pred cccc-chhhhhccHHH---HHHHHHHH-hcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEe-CchhHHhhcC
Q 037627 256 INVL-TRELEEMREED---LERYLHNC-LQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITT-RIKEVAERSD 327 (858)
Q Consensus 256 ~~~~-~~~~~~~~~~~---~~~~l~~~-l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTt-R~~~~~~~~~ 327 (858)
.... .........++ +.+.+... ..++.-++|+|+++.. .....|...+......+.+|++| ....+.....
T Consensus 88 ~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~ 167 (576)
T PRK14965 88 VDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITIL 167 (576)
T ss_pred CCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHH
Confidence 0000 00000011122 22222111 1345568999999865 35677777776655566666555 4444443333
Q ss_pred CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCCh-HHHHHH
Q 037627 328 ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLP-LAIVVL 382 (858)
Q Consensus 328 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P-lai~~~ 382 (858)
.....+++.+++.++....+...+...+...+ ++.+..|++.++|.. .|+..+
T Consensus 168 SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~--~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 168 SRCQRFDFRRIPLQKIVDRLRYIADQEGISIS--DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCCHHHHHHHH
Confidence 33367899999999999888876654433222 466788999999976 444444
No 129
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=8.2e-05 Score=85.14 Aligned_cols=199 Identities=15% Similarity=0.143 Sum_probs=116.1
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
..++|.+...+.|..++..+. -.+.+.++|+.|+||||+|+.++....- ...+.. ...........+.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c-~~~~~~----~~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNC-LNSDKP----TPEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcC-CCcCCC----CCCCCcccHHHHHHhcCCC
Confidence 468899999999988887653 2356889999999999999999874211 111100 0111222233333332221
Q ss_pred cccc-chhhhhccHHHHHHHHHHH----hcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCch-hHHhhcC
Q 037627 256 INVL-TRELEEMREEDLERYLHNC----LQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRIK-EVAERSD 327 (858)
Q Consensus 256 ~~~~-~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~-~~~~~~~ 327 (858)
.... .........+.+.+.+... ..+++-++|+|+++.. +.+..|+..+........+|++|.+. .+.....
T Consensus 90 ~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIr 169 (620)
T PRK14948 90 LDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTII 169 (620)
T ss_pred ccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHH
Confidence 1100 0000112233333333221 1245668999999865 45777877777655556566555433 3333333
Q ss_pred CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 037627 328 ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVL 382 (858)
Q Consensus 328 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 382 (858)
.....+.+..++.++....+...+.......+ ++.+..|++.++|.+..+..+
T Consensus 170 SRc~~~~f~~l~~~ei~~~L~~ia~kegi~is--~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 170 SRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE--PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred hheeEEEecCCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCCHHHHHHH
Confidence 33367889999999998888776654332221 356788999999988655443
No 130
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.13 E-value=5.5e-06 Score=86.54 Aligned_cols=96 Identities=11% Similarity=0.062 Sum_probs=61.2
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCC--CHHHHHHHHHHhcccccc--chhhhhccHHHHHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDY--DTKDLLLRIIRSFKINVL--TRELEEMREEDLER 273 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~~~ 273 (858)
......|+|++|+||||||+++++..... +|+..+|+.+.+.. ...++++.+...+-.... +............+
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999853333 89999999988776 666777777532222211 11111111111222
Q ss_pred HHHHH-hcCceEEEEEEcCCCh
Q 037627 274 YLHNC-LQGKSYLVVVDDAWQK 294 (858)
Q Consensus 274 ~l~~~-l~~~~~LlvlDd~~~~ 294 (858)
..... -.+++++|++|++...
T Consensus 247 ~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHcCCCEEEEEEChHHH
Confidence 21221 2689999999999654
No 131
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.12 E-value=6.2e-05 Score=83.06 Aligned_cols=160 Identities=16% Similarity=0.161 Sum_probs=95.8
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCC-c-ceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNK-F-DRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLH 276 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 276 (858)
..-+.|+|++|+|||+|++.+++. .... . ..++|++. .++..++...+... ..+. +.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~---------~~~~----f~ 188 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG---------KLNE----FR 188 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc---------cHHH----HH
Confidence 446999999999999999999983 3332 2 24666654 34555555444321 1112 22
Q ss_pred HHhcCceEEEEEEcCCCh---hhH-HHHHhhCCC-CCCCcEEEEEeC-chhHH----h----hcCCCCceeecCCCChhH
Q 037627 277 NCLQGKSYLVVVDDAWQK---ETW-ESLKRAFPD-NKNGSRVIITTR-IKEVA----E----RSDENAYAHKLRFLRSDE 342 (858)
Q Consensus 277 ~~l~~~~~LlvlDd~~~~---~~~-~~l~~~l~~-~~~gs~ilvTtR-~~~~~----~----~~~~~~~~~~l~~L~~~e 342 (858)
+....+.-+|++||++.. ..+ +.+...+.. ...|..||+||. .+.-. . ....+ ..+.+++.+.+.
T Consensus 189 ~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~g-l~v~i~~pd~e~ 267 (440)
T PRK14088 189 EKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMG-LVAKLEPPDEET 267 (440)
T ss_pred HHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcC-ceEeeCCCCHHH
Confidence 223334568999999743 111 233333221 112346888874 33211 1 11122 578899999999
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 037627 343 SWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVL 382 (858)
Q Consensus 343 ~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 382 (858)
-.+++.+.+.......+ +++..-|++.+.|..-.+.-+
T Consensus 268 r~~IL~~~~~~~~~~l~--~ev~~~Ia~~~~~~~R~L~g~ 305 (440)
T PRK14088 268 RKKIARKMLEIEHGELP--EEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_pred HHHHHHHHHHhcCCCCC--HHHHHHHHhccccCHHHHHHH
Confidence 99999988765433322 567888999988876555544
No 132
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=0.00026 Score=74.18 Aligned_cols=197 Identities=13% Similarity=0.103 Sum_probs=111.9
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccc-------------cCCcceEEEEEeCCCCC
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDV-------------KNKFDRCAWVSVSQDYD 242 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~-------------~~~f~~~~wv~~~~~~~ 242 (858)
+.++|.+...+.+...+..+. -.+...++|+.|+||+++|..+++..-- ...+....|+.-.....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 357899999999999887653 3468999999999999999888663110 11122334442110000
Q ss_pred HHHHHHHHHHhccccccchhhhhccHHHHHHHHHHHh-----cCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEE
Q 037627 243 TKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCL-----QGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVII 315 (858)
Q Consensus 243 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilv 315 (858)
...+-..-+...+.... .......+++.+ +.+.+ .+.+-++|+|+++.. .....++..+...+ .+.+|+
T Consensus 83 g~~~~~~~~~~~~~~~~--~~~~I~id~ir~-i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fIL 158 (314)
T PRK07399 83 GKLITASEAEEAGLKRK--APPQIRLEQIRE-IKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLIL 158 (314)
T ss_pred ccccchhhhhhcccccc--ccccCcHHHHHH-HHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEE
Confidence 00000000111110000 001112233222 22222 356779999999866 35667777776544 444555
Q ss_pred Ee-CchhHHhhcCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 037627 316 TT-RIKEVAERSDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVL 382 (858)
Q Consensus 316 Tt-R~~~~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 382 (858)
+| ....+..........+.+.+++.++..+.+.+....... ......++..++|.|..+..+
T Consensus 159 i~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~-----~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 159 IAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL-----NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc-----hhHHHHHHHHcCCCHHHHHHH
Confidence 44 444444444444478999999999999999886432111 112367899999999765443
No 133
>CHL00181 cbbX CbbX; Provisional
Probab=98.09 E-value=9.8e-05 Score=76.46 Aligned_cols=136 Identities=16% Similarity=0.146 Sum_probs=75.7
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNC 278 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 278 (858)
...+.++|++|+||||+|+.+++.....+.-...-|+.++ ..++ ...+.... .......+.+.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~----~~~l----~~~~~g~~---------~~~~~~~l~~a 121 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT----RDDL----VGQYIGHT---------APKTKEVLKKA 121 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec----HHHH----HHHHhccc---------hHHHHHHHHHc
Confidence 3468899999999999999998631111111111244443 1122 22111110 11112222221
Q ss_pred hcCceEEEEEEcCCCh-----------hhHHHHHhhCCCCCCCcEEEEEeCchhHHhhc-------CCCCceeecCCCCh
Q 037627 279 LQGKSYLVVVDDAWQK-----------ETWESLKRAFPDNKNGSRVIITTRIKEVAERS-------DENAYAHKLRFLRS 340 (858)
Q Consensus 279 l~~~~~LlvlDd~~~~-----------~~~~~l~~~l~~~~~gs~ilvTtR~~~~~~~~-------~~~~~~~~l~~L~~ 340 (858)
..-+|++|+++.. +....+...+.....+.+||+++....+.... ......+.+++++.
T Consensus 122 ---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~ 198 (287)
T CHL00181 122 ---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTP 198 (287)
T ss_pred ---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCH
Confidence 2349999999742 23344555555555567777777654432211 11125799999999
Q ss_pred hHHHHHHHHHhcCC
Q 037627 341 DESWELFCEKAFRK 354 (858)
Q Consensus 341 ~e~~~l~~~~~~~~ 354 (858)
+|..+++...+...
T Consensus 199 ~el~~I~~~~l~~~ 212 (287)
T CHL00181 199 EELLQIAKIMLEEQ 212 (287)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999988877543
No 134
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.09 E-value=0.00024 Score=69.05 Aligned_cols=181 Identities=19% Similarity=0.180 Sum_probs=108.3
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEe-CCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSV-SQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLH 276 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 276 (858)
+.+++.|+|.-|.|||++.+..... ..+. +..+ +.+ ....+...+...++..+..+.. -.-....+++.+.+.
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s--~~~d-~~~~-v~i~~~~~s~~~~~~ai~~~l~~~p~--~~~~~~~e~~~~~L~ 123 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLAS--LNED-QVAV-VVIDKPTLSDATLLEAIVADLESQPK--VNVNAVLEQIDRELA 123 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHh--cCCC-ceEE-EEecCcchhHHHHHHHHHHHhccCcc--chhHHHHHHHHHHHH
Confidence 4569999999999999999955542 1111 1122 333 3445667788888888776321 111111233333444
Q ss_pred HHh-cCce-EEEEEEcCCCh--hhHHHHHhhCC---CCCCCcEEEEEeCch--------hHHhhcCCCCce-eecCCCCh
Q 037627 277 NCL-QGKS-YLVVVDDAWQK--ETWESLKRAFP---DNKNGSRVIITTRIK--------EVAERSDENAYA-HKLRFLRS 340 (858)
Q Consensus 277 ~~l-~~~~-~LlvlDd~~~~--~~~~~l~~~l~---~~~~gs~ilvTtR~~--------~~~~~~~~~~~~-~~l~~L~~ 340 (858)
+.. +++| ..+++|++++. +..+.++-... ....--+|+.....+ ......... .. |.+.|++.
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~-~ir~~l~P~~~ 202 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRI-DIRIELPPLTE 202 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheE-EEEEecCCcCh
Confidence 433 4666 99999999865 34444443322 111112344433221 111111111 33 89999999
Q ss_pred hHHHHHHHHHhcCCCCCChh-HHHHHHHHHHHcCCChHHHHHHHhH
Q 037627 341 DESWELFCEKAFRKSNGSEG-LEKLGREMVEKCRGLPLAIVVLGGL 385 (858)
Q Consensus 341 ~e~~~l~~~~~~~~~~~~~~-~~~~~~~I~~~~~G~Plai~~~~~~ 385 (858)
++...++..+..+...+.+- ..+....|.....|+|.+|..++..
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 99999999888776554332 2456678999999999999988653
No 135
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=0.00012 Score=83.04 Aligned_cols=195 Identities=11% Similarity=0.108 Sum_probs=112.2
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
++++|.+...+.+..++..+. -.+...++|+.|+||||+|+.++....-...- ...+.......+.+.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~-------~~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP-------DGEPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC-------CCCCCCccHHHHHHhcCCC
Confidence 578999999999999887653 34567789999999999999997631100000 0111122222222221111
Q ss_pred cccc-chhhhhccHHHH---HHHHHHH-hcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEe-CchhHHhhcC
Q 037627 256 INVL-TRELEEMREEDL---ERYLHNC-LQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITT-RIKEVAERSD 327 (858)
Q Consensus 256 ~~~~-~~~~~~~~~~~~---~~~l~~~-l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTt-R~~~~~~~~~ 327 (858)
.... .........+++ .+.+... ..++.-++|+|+++.. ..+..+...+........+|++| ....+.....
T Consensus 88 ~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~ 167 (559)
T PRK05563 88 MDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATIL 167 (559)
T ss_pred CCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHH
Confidence 1000 000000112222 2222211 2356678999999865 45777877776655555556555 3333333222
Q ss_pred CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHH
Q 037627 328 ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIV 380 (858)
Q Consensus 328 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~ 380 (858)
.....+.+.+++.++....+...+...+...+ ++.+..|++.++|.+..+.
T Consensus 168 SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~--~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 168 SRCQRFDFKRISVEDIVERLKYILDKEGIEYE--DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred hHheEEecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHH
Confidence 23367889999999999998887754432222 4667888999999886443
No 136
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=0.00012 Score=77.11 Aligned_cols=172 Identities=12% Similarity=0.124 Sum_probs=96.9
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcccccc---chh-hhhccHHHHHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVL---TRE-LEEMREEDLER 273 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~-~~~~~~~~~~~ 273 (858)
-...+.++|+.|+||||+|+.++...--..... ..+.......+.+...-..+.. +.. ......+++.+
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~ 93 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQG-------GGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRE 93 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHH
Confidence 456788999999999999999887311111000 0011111122222111000000 000 01123344444
Q ss_pred HHHHH----hcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCchh-HHhhcCCCCceeecCCCChhHHHHH
Q 037627 274 YLHNC----LQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRIKE-VAERSDENAYAHKLRFLRSDESWEL 346 (858)
Q Consensus 274 ~l~~~----l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~-~~~~~~~~~~~~~l~~L~~~e~~~l 346 (858)
.+... ..+++-++|+|+++.. +....++..+.....++.+|+||.+.. +...+......+.+.+++.+++.+.
T Consensus 94 l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~ 173 (328)
T PRK05707 94 LVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQW 173 (328)
T ss_pred HHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHH
Confidence 32221 1244556678999865 467778877776666777777777653 3333333347799999999999999
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 037627 347 FCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVL 382 (858)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 382 (858)
+....... .++.+..++..++|.|.....+
T Consensus 174 L~~~~~~~------~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 174 LQQALPES------DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHhcccC------ChHHHHHHHHHcCCCHHHHHHH
Confidence 87653111 1344567889999999755444
No 137
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=9.5e-08 Score=93.21 Aligned_cols=58 Identities=26% Similarity=0.236 Sum_probs=41.7
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCccc-ccCcccccCCCCcEEecccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHID-VIPSCIAKLQRLQTLDISGNMA 625 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~n~~ 625 (858)
.+|||+... ++...+-.-+..|..|+.|.|.++.+. .+-..|.+-.+|+.|||+.|.-
T Consensus 188 q~lDLS~s~-------it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG 246 (419)
T KOG2120|consen 188 QHLDLSNSV-------ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSG 246 (419)
T ss_pred HHhhcchhh-------eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccc
Confidence 567777766 543344455677888888888888876 4556677778888888888843
No 138
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.03 E-value=0.00011 Score=80.96 Aligned_cols=182 Identities=15% Similarity=0.171 Sum_probs=101.8
Q ss_pred CceeeccccHH-HHHHHHhc-CCCCcEEEEEEecCcchHHHHHHHHhcCccccCCc--ceEEEEEeCCCCCHHHHHHHHH
Q 037627 176 GNVVGFDDDVS-KLLAKLLN-KEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKF--DRCAWVSVSQDYDTKDLLLRII 251 (858)
Q Consensus 176 ~~~vGr~~~~~-~l~~~L~~-~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~ 251 (858)
+.++|...... .....+.. +......+.|+|++|+|||+|++.+++. ..... ..+++++. .++...+.
T Consensus 111 ~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~ 182 (405)
T TIGR00362 111 NFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFV 182 (405)
T ss_pred ccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHH
Confidence 33557554432 22222222 2223457899999999999999999984 33222 24566653 33344444
Q ss_pred HhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh---hH-HHHHhhCCCC-CCCcEEEEEeCch-hHHh-
Q 037627 252 RSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE---TW-ESLKRAFPDN-KNGSRVIITTRIK-EVAE- 324 (858)
Q Consensus 252 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~---~~-~~l~~~l~~~-~~gs~ilvTtR~~-~~~~- 324 (858)
..+... ..+.. .+.+.+ .-+|+|||++... .+ +.+...+... ..+..+|+|+... ....
T Consensus 183 ~~~~~~---------~~~~~----~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~ 248 (405)
T TIGR00362 183 NALRNN---------KMEEF----KEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPG 248 (405)
T ss_pred HHHHcC---------CHHHH----HHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhh
Confidence 443211 11222 222222 3488999997532 11 2233333211 1244577777643 2111
Q ss_pred -------hcCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 037627 325 -------RSDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVL 382 (858)
Q Consensus 325 -------~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 382 (858)
....+ ..+.+.+.+.++-.+++.+.+.......+ +++...|++.+.|.+-.+.-+
T Consensus 249 l~~~l~SRl~~g-~~v~i~~pd~~~r~~il~~~~~~~~~~l~--~e~l~~ia~~~~~~~r~l~~~ 310 (405)
T TIGR00362 249 LEERLRSRFEWG-LVVDIEPPDLETRLAILQKKAEEEGLELP--DEVLEFIAKNIRSNVRELEGA 310 (405)
T ss_pred hhhhhhhhccCC-eEEEeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhcCCCHHHHHHH
Confidence 11111 46899999999999999998865443322 567788888888887655443
No 139
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.01 E-value=0.0001 Score=82.27 Aligned_cols=160 Identities=14% Similarity=0.168 Sum_probs=94.8
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCc--ceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKF--DRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYL 275 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 275 (858)
....+.|+|++|+|||+|++.+++. ....+ ..+++++.. ++...+...+... ..+. +
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~---------~~~~----~ 205 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSE------KFTNDFVNALRNN---------TMEE----F 205 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHHHHHcC---------cHHH----H
Confidence 3457899999999999999999983 43332 335566543 3333343333211 1122 2
Q ss_pred HHHhcCceEEEEEEcCCChh----hHHHHHhhCCC-CCCCcEEEEEeCchh--H-------HhhcCCCCceeecCCCChh
Q 037627 276 HNCLQGKSYLVVVDDAWQKE----TWESLKRAFPD-NKNGSRVIITTRIKE--V-------AERSDENAYAHKLRFLRSD 341 (858)
Q Consensus 276 ~~~l~~~~~LlvlDd~~~~~----~~~~l~~~l~~-~~~gs~ilvTtR~~~--~-------~~~~~~~~~~~~l~~L~~~ 341 (858)
.+.++ +.-+|+|||++... ..+.+...+.. ...|..||+|+.... + ......+ ..+++.+.+.+
T Consensus 206 ~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g-l~v~i~~pd~~ 283 (450)
T PRK00149 206 KEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWG-LTVDIEPPDLE 283 (450)
T ss_pred HHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCC-eeEEecCCCHH
Confidence 22333 34489999997431 12233332221 112345777776542 1 1122222 57899999999
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 037627 342 ESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVL 382 (858)
Q Consensus 342 e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 382 (858)
+-.+++.+.+.......+ +++..-|++.++|..-.+.-+
T Consensus 284 ~r~~il~~~~~~~~~~l~--~e~l~~ia~~~~~~~R~l~~~ 322 (450)
T PRK00149 284 TRIAILKKKAEEEGIDLP--DEVLEFIAKNITSNVRELEGA 322 (450)
T ss_pred HHHHHHHHHHHHcCCCCC--HHHHHHHHcCcCCCHHHHHHH
Confidence 999999998865432222 567888999999887755443
No 140
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.01 E-value=2e-05 Score=78.13 Aligned_cols=184 Identities=14% Similarity=0.134 Sum_probs=114.3
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEE-EEEeCCCCCHHHHHHHHHHh
Q 037627 175 EGNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCA-WVSVSQDYDTKDLLLRIIRS 253 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~i~~~ 253 (858)
-.+++|-+..+..+...+.. ...++...||++|.|||+-|+.++...--...|.+.+ -.+++...... +.+.=
T Consensus 35 ~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~K--- 108 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREK--- 108 (346)
T ss_pred HHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhh---
Confidence 35688999999999998877 3477999999999999999999987432234453332 23333221111 11000
Q ss_pred ccccccchhhhhccHHHHHHHHHHHh--cCce-EEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEE-EEeCchhHHhhcC
Q 037627 254 FKINVLTRELEEMREEDLERYLHNCL--QGKS-YLVVVDDAWQK--ETWESLKRAFPDNKNGSRVI-ITTRIKEVAERSD 327 (858)
Q Consensus 254 l~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~-~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~il-vTtR~~~~~~~~~ 327 (858)
..+...+.....+.. ..++ -.||||+++.. +.|..+...+......++.| ||+--..+.....
T Consensus 109 -----------ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 109 -----------IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred -----------hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 001111111110000 0123 48899999876 57999988887766566654 4544333333332
Q ss_pred CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChH
Q 037627 328 ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPL 377 (858)
Q Consensus 328 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl 377 (858)
.....+..++|.+++...-+...+...+.+.+ .+..+.|++.++|--.
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d--~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIASKEGVDID--DDALKLIAKISDGDLR 225 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCcHH
Confidence 33356889999999999998888866665433 5677889999988653
No 141
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.01 E-value=5.2e-06 Score=63.74 Aligned_cols=55 Identities=29% Similarity=0.476 Sum_probs=42.5
Q ss_pred eeeeccCCccccccccCCCCCcc-ccccCCcccceEeccCCcccccC-cccccCCCCcEEeccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLP-EEMVKLVNLKYLRLTNAHIDVIP-SCIAKLQRLQTLDISGNM 624 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~n~ 624 (858)
++|++++|. +. .+| ..|..+++|++|++++|.++.+| ..|.++++|++|++++|+
T Consensus 4 ~~L~l~~n~-------l~--~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 4 ESLDLSNNK-------LT--EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp SEEEETSST-------ES--EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cEEECCCCC-------CC--ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 677888887 66 676 46778888888888888888775 457888888888888874
No 142
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.00 E-value=5e-05 Score=89.85 Aligned_cols=156 Identities=15% Similarity=0.166 Sum_probs=86.3
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCcc---ccCCc-ceEEEEEeCCCCCHHHHHHHHH
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNND---VKNKF-DRCAWVSVSQDYDTKDLLLRII 251 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~---~~~~f-~~~~wv~~~~~~~~~~~~~~i~ 251 (858)
+.++||+.+++++++.|.... ..-+.++|++|+|||++|+.+++... +...+ +..+|. ++ .. .+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~~----~~----~l~ 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-LD----MG----SLL 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-ec----HH----HHh
Confidence 469999999999999887653 34567999999999999999987321 11111 223332 11 11 111
Q ss_pred HhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh----------h-HHHHHhhCCCCCCCcEEEEEeCch
Q 037627 252 RSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE----------T-WESLKRAFPDNKNGSRVIITTRIK 320 (858)
Q Consensus 252 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~----------~-~~~l~~~l~~~~~gs~ilvTtR~~ 320 (858)
...... ..-.+.+...+...-..++.+|++|+++..- + .+-+...+.. + ..++|-+|...
T Consensus 251 a~~~~~-------g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~-g-~i~~IgaTt~~ 321 (731)
T TIGR02639 251 AGTKYR-------GDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS-G-KLRCIGSTTYE 321 (731)
T ss_pred hhcccc-------chHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC-C-CeEEEEecCHH
Confidence 100000 0001122222322223468899999997331 1 2223333332 1 24555555543
Q ss_pred hHHh------hcCCCCceeecCCCChhHHHHHHHHHh
Q 037627 321 EVAE------RSDENAYAHKLRFLRSDESWELFCEKA 351 (858)
Q Consensus 321 ~~~~------~~~~~~~~~~l~~L~~~e~~~l~~~~~ 351 (858)
+... ........+.+.+++.++..+++....
T Consensus 322 e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 322 EYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 2211 111122678999999999999998654
No 143
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.00 E-value=0.00016 Score=79.56 Aligned_cols=153 Identities=16% Similarity=0.151 Sum_probs=87.8
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNC 278 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 278 (858)
..-+.|+|+.|+|||+|++.+++. .......+++++. ..+...+...+... . .+.+++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~~------~~f~~~~~~~l~~~---------~----~~~f~~~ 199 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVRS------ELFTEHLVSAIRSG---------E----MQRFRQF 199 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEeeH------HHHHHHHHHHHhcc---------h----HHHHHHH
Confidence 356899999999999999999983 3222234556553 33344444433211 0 1123333
Q ss_pred hcCceEEEEEEcCCChh----hHHHHHhhCCCC-CCCcEEEEEeCch-h--------HHhhcCCCCceeecCCCChhHHH
Q 037627 279 LQGKSYLVVVDDAWQKE----TWESLKRAFPDN-KNGSRVIITTRIK-E--------VAERSDENAYAHKLRFLRSDESW 344 (858)
Q Consensus 279 l~~~~~LlvlDd~~~~~----~~~~l~~~l~~~-~~gs~ilvTtR~~-~--------~~~~~~~~~~~~~l~~L~~~e~~ 344 (858)
.. ..-+|++||++... ..+.+...+... ..|..||+||... . +......+ ..+.+.+++.++..
T Consensus 200 ~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~G-l~~~l~~pd~e~r~ 277 (445)
T PRK12422 200 YR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWG-IAIPLHPLTKEGLR 277 (445)
T ss_pred cc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCC-eEEecCCCCHHHHH
Confidence 33 34488889987542 122333332211 1245688888542 1 11222222 57899999999999
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHHHcCCCh
Q 037627 345 ELFCEKAFRKSNGSEGLEKLGREMVEKCRGLP 376 (858)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 376 (858)
+++.+.+......-+ +++..-|+..+.|.-
T Consensus 278 ~iL~~k~~~~~~~l~--~evl~~la~~~~~di 307 (445)
T PRK12422 278 SFLERKAEALSIRIE--ETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHHHHcCCCCC--HHHHHHHHHhcCCCH
Confidence 999988765443222 456666777776554
No 144
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.00 E-value=0.00013 Score=76.74 Aligned_cols=199 Identities=13% Similarity=0.077 Sum_probs=118.9
Q ss_pred CcCCceeeccccHHHHHHHHhcC--CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHH
Q 037627 173 SIEGNVVGFDDDVSKLLAKLLNK--EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRI 250 (858)
Q Consensus 173 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 250 (858)
..++.++||+.|+..+..++... ....+.+-|.|.+|.|||.+...++.+..-...=..++++++..-..+.+++..|
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 45678999999999999998765 3456789999999999999999998742222111246778777666788888888
Q ss_pred HHhccccccchhhhhccHHHHHHHHHHHhcC--ceEEEEEEcCCChh--hHHHHHh--hCCCCCCCcEEEEEeCchh---
Q 037627 251 IRSFKINVLTRELEEMREEDLERYLHNCLQG--KSYLVVVDDAWQKE--TWESLKR--AFPDNKNGSRVIITTRIKE--- 321 (858)
Q Consensus 251 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~LlvlDd~~~~~--~~~~l~~--~l~~~~~gs~ilvTtR~~~--- 321 (858)
+..+.......... .+..+.+.....+ ..+|+|+|+.+... .-..+.. .++. -+++++|+..--..
T Consensus 227 ~~~~~q~~~s~~~~----~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~-lp~sr~iLiGiANslDl 301 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTG----MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPK-LPNSRIILIGIANSLDL 301 (529)
T ss_pred HHHHHHHhcCCchh----HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhccc-CCcceeeeeeehhhhhH
Confidence 88773222111111 2333444444432 37899999987542 1111111 1222 23566654332111
Q ss_pred ---HH---hh-cCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChH
Q 037627 322 ---VA---ER-SDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPL 377 (858)
Q Consensus 322 ---~~---~~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl 377 (858)
.. .. .......+..+|.+.++..++|..+...... .......++-+++++.|.--
T Consensus 302 TdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t-~~~~~~Aie~~ArKvaa~SG 363 (529)
T KOG2227|consen 302 TDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEEST-SIFLNAAIELCARKVAAPSG 363 (529)
T ss_pred HHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccc-cccchHHHHHHHHHhccCch
Confidence 11 11 1222267888999999999999988754433 22222334444444444433
No 145
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.99 E-value=1.3e-06 Score=84.38 Aligned_cols=236 Identities=17% Similarity=0.095 Sum_probs=132.8
Q ss_pred CCcccceEeccCCccc-----ccCcccccCCCCcEEeccccccccccchhhhccccccccccccccccCCCCCccccccc
Q 037627 588 KLVNLKYLRLTNAHID-----VIPSCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGNFTGTLNIENLSNLQTLK 662 (858)
Q Consensus 588 ~l~~L~~L~L~~n~i~-----~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~ 662 (858)
.+..+..++||+|.|+ .+...|.+-.+|+..+++.- +++..-..+. .+|+.| ...+.+|+.|+..+
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~--~~L~~L------l~aLlkcp~l~~v~ 98 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELY--SNLVML------LKALLKCPRLQKVD 98 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHH--HHHHHH------HHHHhcCCcceeee
Confidence 3555666666666664 23344555566666666554 3332221110 011111 11244566666666
Q ss_pred eeeccccccc--C----cccccCCCeeEEeecccccccc------------hhhhhcCCCCCeEEeeccCCccccC---C
Q 037627 663 YVERGSWAEI--N----PEKLVNLRDLRIISKYQEEEFS------------FKSIAYLKNLQLLSIRLSDDTCFDS---L 721 (858)
Q Consensus 663 l~~~~~~~~~--~----~~~l~~L~~L~l~~~~~~~~~~------------~~~l~~l~~L~~L~l~~~~~~~~~~---~ 721 (858)
++.|.+.... + +.+-+.|.+|.+.+|....... .....+-|.|++.....|.....+. -
T Consensus 99 LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a 178 (388)
T COG5238 99 LSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSA 178 (388)
T ss_pred ccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHH
Confidence 6666532211 1 2344566677776665322111 0123345778888777765543321 1
Q ss_pred CCCCCCCCccEEEeccc-CCCCCh--------hhhhccCCccEEEEecccCCCCC----ccccCCCCCCCeeEeeccccC
Q 037627 722 QPLSDCSYLIDLRLSGK-IEKLPE--------DLHEVLPNLECLSLKKSHLKEDP----MPKLEKLPNLTILDLGLKSYG 788 (858)
Q Consensus 722 ~~l~~l~~L~~L~l~~~-~~~~p~--------~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~~~ 788 (858)
..+.+..+|+.+.+..| +. |. .++. +.+|+.|+|.+|.++... ...+...+.|+.|.+..|-++
T Consensus 179 ~~l~sh~~lk~vki~qNgIr--pegv~~L~~~gl~y-~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 179 ALLESHENLKEVKIQQNGIR--PEGVTMLAFLGLFY-SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HHHHhhcCceeEEeeecCcC--cchhHHHHHHHHHH-hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 12444568888888776 32 22 2333 689999999999886432 234567788999999988776
Q ss_pred CceE-----EECCCCccccceeeecCCCCCCeEE-------EccCccccccceeecccc
Q 037627 789 GKKM-----ICTTKGFHLLEILQLIDLNDLAQWQ-------VEDGAMPILRGLRVTNAY 835 (858)
Q Consensus 789 ~~~~-----~~~~~~~~~L~~L~l~~~~~l~~~~-------~~~~~l~~L~~L~l~~c~ 835 (858)
.... .+....+|+|..|...++..-..+. +..+++|-|..|.+.+|.
T Consensus 256 ~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 256 NEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred cccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 5432 1233457888888887754322221 234678999999999885
No 146
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=1.2e-06 Score=85.64 Aligned_cols=80 Identities=26% Similarity=0.345 Sum_probs=46.8
Q ss_pred CCcccceEeccCCcccc---cCcccccCCCCcEEeccccccccccchhhhccccccccc-ccc----c-cccCCCCCccc
Q 037627 588 KLVNLKYLRLTNAHIDV---IPSCIAKLQRLQTLDISGNMAFMELPREICELKELRHLI-GNF----T-GTLNIENLSNL 658 (858)
Q Consensus 588 ~l~~L~~L~L~~n~i~~---lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~-~~~----~-~~~~~~~l~~L 658 (858)
.+++++.|||.+|.|+. +-.-+.++|.|++|+|+.|++...+-..-..+.+|+.|. |+. + ....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 46788899999998873 333456789999999998854322211102344555552 111 1 11134556666
Q ss_pred cccceeecc
Q 037627 659 QTLKYVERG 667 (858)
Q Consensus 659 ~~L~l~~~~ 667 (858)
++|+++.|+
T Consensus 149 telHmS~N~ 157 (418)
T KOG2982|consen 149 TELHMSDNS 157 (418)
T ss_pred hhhhhccch
Confidence 666666653
No 147
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.97 E-value=1.1e-07 Score=103.39 Aligned_cols=125 Identities=19% Similarity=0.151 Sum_probs=65.7
Q ss_pred cccccceeeccccccc-CcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEe
Q 037627 657 NLQTLKYVERGSWAEI-NPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRL 735 (858)
Q Consensus 657 ~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 735 (858)
.|...+.++|.....+ .+.-++.|+.|+++.|..... ..+..+++|+.|+|++|....++.+... .+ .|..|.|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~l~~~-gc-~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRHVPQLSMV-GC-KLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhccccccchh-hh-hheeeee
Confidence 4555555666533332 244556666666666654433 4566666777777766655543222111 12 2666666
Q ss_pred cccCCCCChhhhhccCCccEEEEecccCCCC-CccccCCCCCCCeeEeecccc
Q 037627 736 SGKIEKLPEDLHEVLPNLECLSLKKSHLKED-PMPKLEKLPNLTILDLGLKSY 787 (858)
Q Consensus 736 ~~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~~ 787 (858)
++|--+--..+.+ +.+|+.||+++|-+.+. -...+..|..|+.|+|.+|.+
T Consensus 240 rnN~l~tL~gie~-LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALTTLRGIEN-LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccHHHhhhhHHh-hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 6652221224444 46666666666655432 223344555666666666654
No 148
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=8.7e-06 Score=57.07 Aligned_cols=39 Identities=33% Similarity=0.558 Sum_probs=30.1
Q ss_pred cccceEeccCCcccccCcccccCCCCcEEecccccccccc
Q 037627 590 VNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMEL 629 (858)
Q Consensus 590 ~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~l 629 (858)
++|++|++++|+|+.+|..+++|++|++|++++| .+..+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 4788899999999988877889999999999988 34443
No 149
>PLN03150 hypothetical protein; Provisional
Probab=97.93 E-value=8.5e-06 Score=94.44 Aligned_cols=104 Identities=18% Similarity=0.156 Sum_probs=55.9
Q ss_pred CCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-C-CCCChhhhhccCCccEEE
Q 037627 680 LRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-I-EKLPEDLHEVLPNLECLS 757 (858)
Q Consensus 680 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~-~~~p~~~~~~l~~L~~L~ 757 (858)
++.|++.+|.....++ ..+..+++|+.|+|++|.+... ....+..+++|+.|+|++| + +.+|..+.. +++|+.|+
T Consensus 420 v~~L~L~~n~L~g~ip-~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~-L~~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQGLRGFIP-NDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRILN 496 (623)
T ss_pred EEEEECCCCCccccCC-HHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhc-CCCCCEEE
Confidence 4556666665555555 5666666666666666544321 2223455555666666554 2 234555544 45666666
Q ss_pred EecccCCCCCccccCCC-CCCCeeEeeccc
Q 037627 758 LKKSHLKEDPMPKLEKL-PNLTILDLGLKS 786 (858)
Q Consensus 758 L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~ 786 (858)
|++|.+++..|..+..+ .++..+++.+|.
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCc
Confidence 66666555555555432 344455555543
No 150
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.93 E-value=4e-05 Score=80.75 Aligned_cols=96 Identities=11% Similarity=0.070 Sum_probs=63.2
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCC--CCHHHHHHHHHHhccccccch-hhhhcc-HHHHHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQD--YDTKDLLLRIIRSFKINVLTR-ELEEMR-EEDLER 273 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~-~~~~~~-~~~~~~ 273 (858)
....++|+|++|+|||||++.+++... ..+|+..+|+.+.+. .+..++++.+...+-...... ...... ...+.+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 456899999999999999999998532 337988899988755 788889998854433322110 011111 112222
Q ss_pred HHHHH-hcCceEEEEEEcCCCh
Q 037627 274 YLHNC-LQGKSYLVVVDDAWQK 294 (858)
Q Consensus 274 ~l~~~-l~~~~~LlvlDd~~~~ 294 (858)
..... -.+++++|++|++...
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHH
Confidence 22222 2589999999999754
No 151
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.90 E-value=0.00023 Score=79.72 Aligned_cols=159 Identities=14% Similarity=0.189 Sum_probs=94.1
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCc--ceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKF--DRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLH 276 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 276 (858)
...+.|+|..|+|||.|++.+++. ....+ ..+++++. .++...+...+... . .+.++
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~~---------~----~~~f~ 372 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRDG---------K----GDSFR 372 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHhc---------c----HHHHH
Confidence 345899999999999999999983 33222 24566654 33444443332211 1 11222
Q ss_pred HHhcCceEEEEEEcCCCh---hhH-HHHHhhCCCC-CCCcEEEEEeCchh---------HHhhcCCCCceeecCCCChhH
Q 037627 277 NCLQGKSYLVVVDDAWQK---ETW-ESLKRAFPDN-KNGSRVIITTRIKE---------VAERSDENAYAHKLRFLRSDE 342 (858)
Q Consensus 277 ~~l~~~~~LlvlDd~~~~---~~~-~~l~~~l~~~-~~gs~ilvTtR~~~---------~~~~~~~~~~~~~l~~L~~~e 342 (858)
+.+.. .=+|||||++.. +.| +.|...+... ..|..|||||+... +......+ ..+.+.+.+.+.
T Consensus 373 ~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~G-Lvv~I~~PD~Et 450 (617)
T PRK14086 373 RRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWG-LITDVQPPELET 450 (617)
T ss_pred HHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcC-ceEEcCCCCHHH
Confidence 33332 347889999744 222 2233333221 22455888887531 22222223 678999999999
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 037627 343 SWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVL 382 (858)
Q Consensus 343 ~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 382 (858)
-.+++.+.+.......+ ++++.-|++++.+..-.+.-+
T Consensus 451 R~aIL~kka~~r~l~l~--~eVi~yLa~r~~rnvR~Lega 488 (617)
T PRK14086 451 RIAILRKKAVQEQLNAP--PEVLEFIASRISRNIRELEGA 488 (617)
T ss_pred HHHHHHHHHHhcCCCCC--HHHHHHHHHhccCCHHHHHHH
Confidence 99999988866554333 567777888877775554443
No 152
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.88 E-value=0.00037 Score=68.23 Aligned_cols=120 Identities=14% Similarity=0.265 Sum_probs=71.8
Q ss_pred CcCCceeeccccHHHHHHHHh---cCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHH
Q 037627 173 SIEGNVVGFDDDVSKLLAKLL---NKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLR 249 (858)
Q Consensus 173 ~~~~~~vGr~~~~~~l~~~L~---~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 249 (858)
..-+.++|.+.+.+.+++-.. .+ ....-+.++|..|+|||++++.+.+. .... +.--|.+.+.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G-~pannvLL~G~rGtGKSSlVkall~~--y~~~--GLRlIev~k~--------- 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQG-LPANNVLLWGARGTGKSSLVKALLNE--YADQ--GLRLIEVSKE--------- 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcC-CCCcceEEecCCCCCHHHHHHHHHHH--Hhhc--CceEEEECHH---------
Confidence 344679999999998876543 22 23567888999999999999999873 2221 1222223211
Q ss_pred HHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCC---ChhhHHHHHhhCCC----CCCCcEEEEEeCchhH
Q 037627 250 IIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAW---QKETWESLKRAFPD----NKNGSRVIITTRIKEV 322 (858)
Q Consensus 250 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~---~~~~~~~l~~~l~~----~~~gs~ilvTtR~~~~ 322 (858)
+-.+...+.+.++. ...+|+|.+||+. ..+.+..++..+.. .+.+..|..||-.++.
T Consensus 90 --------------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 90 --------------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred --------------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 11123334444442 3579999999984 33456777766652 2334444455544443
No 153
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.85 E-value=9.7e-05 Score=88.78 Aligned_cols=155 Identities=13% Similarity=0.143 Sum_probs=86.0
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCc------ce-EEEEEeCCCCCHHHHHH
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKF------DR-CAWVSVSQDYDTKDLLL 248 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f------~~-~~wv~~~~~~~~~~~~~ 248 (858)
+.+|||+.++++++..|.... ...+.++|++|+|||++|+.+++. +...+ .. ++.++++
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l~~~---------- 238 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLALDMG---------- 238 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEeeHH----------
Confidence 469999999999999997654 345668999999999999999873 22111 12 2222221
Q ss_pred HHHHhccccccchhhhhccHHHHHHHHHHHhc-CceEEEEEEcCCChh---------hHHHHHhhCCCCCCCcEEEEEeC
Q 037627 249 RIIRSFKINVLTRELEEMREEDLERYLHNCLQ-GKSYLVVVDDAWQKE---------TWESLKRAFPDNKNGSRVIITTR 318 (858)
Q Consensus 249 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDd~~~~~---------~~~~l~~~l~~~~~gs~ilvTtR 318 (858)
.+... ... ...-...+...+...-+ +++.+|++|+++... +...+..+....+ ..++|-+|.
T Consensus 239 ~l~a~--~~~-----~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt 310 (852)
T TIGR03346 239 ALIAG--AKY-----RGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATT 310 (852)
T ss_pred HHhhc--chh-----hhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCc
Confidence 11100 000 00001122222322222 468999999997431 1222222222222 345565555
Q ss_pred chhHHhh------cCCCCceeecCCCChhHHHHHHHHHhc
Q 037627 319 IKEVAER------SDENAYAHKLRFLRSDESWELFCEKAF 352 (858)
Q Consensus 319 ~~~~~~~------~~~~~~~~~l~~L~~~e~~~l~~~~~~ 352 (858)
.+..... .......+.+...+.++..+++.....
T Consensus 311 ~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~ 350 (852)
T TIGR03346 311 LDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKE 350 (852)
T ss_pred HHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHH
Confidence 4433211 111225688999999999999876543
No 154
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.83 E-value=6.2e-05 Score=90.20 Aligned_cols=156 Identities=16% Similarity=0.188 Sum_probs=87.1
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCcc---ccCCc-ceEEEEEeCCCCCHHHHHHHHH
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNND---VKNKF-DRCAWVSVSQDYDTKDLLLRII 251 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~---~~~~f-~~~~wv~~~~~~~~~~~~~~i~ 251 (858)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.++.... +.... ...+|. + +... ++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~----l~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGL----LL 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHH----Hh
Confidence 458999999999999997653 33567999999999999999987321 11111 233442 2 1111 11
Q ss_pred HhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh---------hHHHHHhhCCCCCCCcEEEEEeCchhH
Q 037627 252 RSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE---------TWESLKRAFPDNKNGSRVIITTRIKEV 322 (858)
Q Consensus 252 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~---------~~~~l~~~l~~~~~gs~ilvTtR~~~~ 322 (858)
. ......+ -.+.+...+.+.-..++.+|++|+++..- +...+..+....+ ..++|.+|..+..
T Consensus 248 a---g~~~~ge----~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ey 319 (821)
T CHL00095 248 A---GTKYRGE----FEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDEY 319 (821)
T ss_pred c---cCCCccH----HHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHHH
Confidence 1 0000000 01222333333323568999999996321 1223332222222 3456666665543
Q ss_pred Hh------hcCCCCceeecCCCChhHHHHHHHHH
Q 037627 323 AE------RSDENAYAHKLRFLRSDESWELFCEK 350 (858)
Q Consensus 323 ~~------~~~~~~~~~~l~~L~~~e~~~l~~~~ 350 (858)
.. ........+.+...+.++..++++..
T Consensus 320 ~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 320 RKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 22 11222267888999999998888654
No 155
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.83 E-value=0.00018 Score=86.10 Aligned_cols=154 Identities=14% Similarity=0.140 Sum_probs=85.6
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCc------c-eEEEEEeCCCCCHHHHHH
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKF------D-RCAWVSVSQDYDTKDLLL 248 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f------~-~~~wv~~~~~~~~~~~~~ 248 (858)
+.+|||+.+++++++.|.... ...+.++|++|+|||++|+.++.. ..... . .+++++++....
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~--i~~~~vp~~l~~~~~~~l~l~~l~a------ 247 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR--IINGEVPEGLKGRRVLALDMGALVA------ 247 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHH--hhcCCCchhhCCCEEEEEehhhhhh------
Confidence 469999999999999997654 345679999999999999999873 21110 1 233333322100
Q ss_pred HHHHhccccccchhhhhccHHHHHHHHHHHh-cCceEEEEEEcCCChh---------hHHHHHhhCCCCCCCcEEEEEeC
Q 037627 249 RIIRSFKINVLTRELEEMREEDLERYLHNCL-QGKSYLVVVDDAWQKE---------TWESLKRAFPDNKNGSRVIITTR 318 (858)
Q Consensus 249 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDd~~~~~---------~~~~l~~~l~~~~~gs~ilvTtR 318 (858)
... ....-.+.+...+.+.. .+.+.+|++|+++... +...+..+....+ ..++|-||.
T Consensus 248 ----g~~-------~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g-~l~~IgaTt 315 (857)
T PRK10865 248 ----GAK-------YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG-ELHCVGATT 315 (857)
T ss_pred ----ccc-------hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC-CCeEEEcCC
Confidence 000 00000112222222221 2568999999997542 1223322222222 345666555
Q ss_pred chhHHh------hcCCCCceeecCCCChhHHHHHHHHHh
Q 037627 319 IKEVAE------RSDENAYAHKLRFLRSDESWELFCEKA 351 (858)
Q Consensus 319 ~~~~~~------~~~~~~~~~~l~~L~~~e~~~l~~~~~ 351 (858)
.++... ........+.+..-+.++..++++...
T Consensus 316 ~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 316 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 544321 111122456677778899999887654
No 156
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.82 E-value=0.00028 Score=76.35 Aligned_cols=175 Identities=13% Similarity=0.152 Sum_probs=98.4
Q ss_pred CCceeeccccHHHHHHHHhcC-----------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCH
Q 037627 175 EGNVVGFDDDVSKLLAKLLNK-----------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDT 243 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 243 (858)
-.++.|.+..++++.+.+..+ -...+-+.++|++|+|||+||+.+++ .....| +.+..
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~--~l~~~f-----i~i~~---- 212 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAH--HTTATF-----IRVVG---- 212 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hcCCCE-----EEEeh----
Confidence 356789988888887766321 12457799999999999999999998 333333 22211
Q ss_pred HHHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh-------------h---hHHHHHhhCCC-
Q 037627 244 KDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK-------------E---TWESLKRAFPD- 306 (858)
Q Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-------------~---~~~~l~~~l~~- 306 (858)
..+ ....... ....+.+.+.......+.+|++|+++.. + .+..+...+..
T Consensus 213 s~l----~~k~~ge---------~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~ 279 (398)
T PTZ00454 213 SEF----VQKYLGE---------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF 279 (398)
T ss_pred HHH----HHHhcch---------hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence 111 1111100 1112223333333567899999998642 0 12233333332
Q ss_pred -CCCCcEEEEEeCchhHHh-hcC---CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCCh
Q 037627 307 -NKNGSRVIITTRIKEVAE-RSD---ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLP 376 (858)
Q Consensus 307 -~~~gs~ilvTtR~~~~~~-~~~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 376 (858)
...+..||+||....... ... .....+.+...+.++..++|.......... + .-...++++.+.|+-
T Consensus 280 ~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~--dvd~~~la~~t~g~s 351 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-E--EVDLEDFVSRPEKIS 351 (398)
T ss_pred CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-c--ccCHHHHHHHcCCCC
Confidence 224567888887554322 111 112568888888888888888765443321 1 112356667776654
No 157
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.82 E-value=0.00066 Score=80.93 Aligned_cols=161 Identities=14% Similarity=0.122 Sum_probs=85.9
Q ss_pred CCceeeccccHHHHHHHHhc----CCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHH
Q 037627 175 EGNVVGFDDDVSKLLAKLLN----KEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRI 250 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 250 (858)
+..++|.+.-.+++.+++.. +....+++.++|++|+|||++|+.++. .....|- -++++...+..++..
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~--~l~~~~~---~i~~~~~~~~~~i~g-- 391 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK--ALNRKFV---RFSLGGVRDEAEIRG-- 391 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH--HhcCCeE---EEeCCCcccHHHHcC--
Confidence 34588999999998886642 223456899999999999999999998 4444432 223332222222111
Q ss_pred HHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh------hHHHHHhhCCC--------C-------CC
Q 037627 251 IRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE------TWESLKRAFPD--------N-------KN 309 (858)
Q Consensus 251 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~------~~~~l~~~l~~--------~-------~~ 309 (858)
.... ........+.+.+...- ..+-+|+||+++... ....+...+.. . ..
T Consensus 392 -----~~~~---~~g~~~g~i~~~l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s 462 (775)
T TIGR00763 392 -----HRRT---YVGAMPGRIIQGLKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLS 462 (775)
T ss_pred -----CCCc---eeCCCCchHHHHHHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccC
Confidence 0000 00001122333444332 233478999997542 12233332221 0 02
Q ss_pred CcEEEEEeCchh-HHhhcCCCCceeecCCCChhHHHHHHHHHh
Q 037627 310 GSRVIITTRIKE-VAERSDENAYAHKLRFLRSDESWELFCEKA 351 (858)
Q Consensus 310 gs~ilvTtR~~~-~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~ 351 (858)
+..+|.||.... +..........+.+.+++.++-.+++....
T Consensus 463 ~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 463 KVIFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred CEEEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 333444554332 222222222578999999988888876543
No 158
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.81 E-value=0.00019 Score=79.35 Aligned_cols=161 Identities=11% Similarity=0.152 Sum_probs=91.7
Q ss_pred CceeeccccHHHHHHHHhcC-----------CCCcEEEEEEecCcchHHHHHHHHhcCccccCC-----cceEEEEEeCC
Q 037627 176 GNVVGFDDDVSKLLAKLLNK-----------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNK-----FDRCAWVSVSQ 239 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-----f~~~~wv~~~~ 239 (858)
..+.|.+..++++.+.+..+ -...+-+.++|++|+|||++|+.+++. .... .....|+++..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEeccc
Confidence 45778999999988876421 123456999999999999999999984 3222 12344554432
Q ss_pred CCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHHh-cCceEEEEEEcCCCh---------hh-----HHHHHhhC
Q 037627 240 DYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCL-QGKSYLVVVDDAWQK---------ET-----WESLKRAF 304 (858)
Q Consensus 240 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDd~~~~---------~~-----~~~l~~~l 304 (858)
. .++...... .......+.+..+... .+++++|+||+++.. .+ ..++...+
T Consensus 260 ~--------eLl~kyvGe------te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 260 P--------ELLNKYVGE------TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred h--------hhcccccch------HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 1 111111000 0001122333333222 357899999999743 11 23444444
Q ss_pred CCC--CCCcEEEEEeCchhHHh-hcC---CCCceeecCCCChhHHHHHHHHHhc
Q 037627 305 PDN--KNGSRVIITTRIKEVAE-RSD---ENAYAHKLRFLRSDESWELFCEKAF 352 (858)
Q Consensus 305 ~~~--~~gs~ilvTtR~~~~~~-~~~---~~~~~~~l~~L~~~e~~~l~~~~~~ 352 (858)
... ..+..||.||....... ... .....+.++..+.++..++|..+..
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 422 23445566665443222 111 1125689999999999999988764
No 159
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.81 E-value=0.00017 Score=68.42 Aligned_cols=45 Identities=27% Similarity=0.255 Sum_probs=37.1
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcC
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
.++||-++.++++.-...++ +.+.+.|.||+|+||||-+..+++.
T Consensus 27 ~dIVGNe~tv~rl~via~~g--nmP~liisGpPG~GKTTsi~~LAr~ 71 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEG--NMPNLIISGPPGTGKTTSILCLARE 71 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcC--CCCceEeeCCCCCchhhHHHHHHHH
Confidence 46899999999887665544 4778999999999999988888873
No 160
>PRK10536 hypothetical protein; Provisional
Probab=97.81 E-value=5.7e-05 Score=74.78 Aligned_cols=134 Identities=15% Similarity=0.235 Sum_probs=76.9
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEE--e--CC-----CCCHHH-
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVS--V--SQ-----DYDTKD- 245 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~--~--~~-----~~~~~~- 245 (858)
..+.+|......+..++... ..+.++|++|+|||+||..++.+.-....|+.++-.. + ++ +-+..+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHH
Confidence 44667888888888888653 3999999999999999999887422234455443321 1 11 001111
Q ss_pred ---HHHHHHHhccccccchhhhhccHHHHHHHH-----------HHHhcCceE---EEEEEcCCChhhHHHHHhhCCCCC
Q 037627 246 ---LLLRIIRSFKINVLTRELEEMREEDLERYL-----------HNCLQGKSY---LVVVDDAWQKETWESLKRAFPDNK 308 (858)
Q Consensus 246 ---~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l-----------~~~l~~~~~---LlvlDd~~~~~~~~~l~~~l~~~~ 308 (858)
.+..+...+..-. ..+.+...+ ..+++++.+ +||+|++.+... .++...+...+
T Consensus 131 ~~p~~~pi~D~L~~~~--------~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~-~~~k~~ltR~g 201 (262)
T PRK10536 131 FAPYFRPVYDVLVRRL--------GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA-AQMKMFLTRLG 201 (262)
T ss_pred HHHHHHHHHHHHHHHh--------ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH-HHHHHHHhhcC
Confidence 1122222211100 001111111 124567655 999999987653 44444445566
Q ss_pred CCcEEEEEeCchhH
Q 037627 309 NGSRVIITTRIKEV 322 (858)
Q Consensus 309 ~gs~ilvTtR~~~~ 322 (858)
.+|++|+|.-..++
T Consensus 202 ~~sk~v~~GD~~Qi 215 (262)
T PRK10536 202 ENVTVIVNGDITQC 215 (262)
T ss_pred CCCEEEEeCChhhc
Confidence 79999999875543
No 161
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.78 E-value=9.4e-05 Score=67.38 Aligned_cols=95 Identities=20% Similarity=0.194 Sum_probs=52.5
Q ss_pred EEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcC
Q 037627 202 ISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQG 281 (858)
Q Consensus 202 v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 281 (858)
|.|+|++|+|||++|+.++++ ...+ .+.++.+...+. ........+...+.+.-..
T Consensus 1 ill~G~~G~GKT~l~~~la~~--l~~~---~~~i~~~~~~~~-------------------~~~~~~~~i~~~~~~~~~~ 56 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY--LGFP---FIEIDGSELISS-------------------YAGDSEQKIRDFFKKAKKS 56 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH--TTSE---EEEEETTHHHTS-------------------STTHHHHHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhh--cccc---cccccccccccc-------------------ccccccccccccccccccc
Confidence 579999999999999999983 3322 344443221100 0111223334444443334
Q ss_pred c-eEEEEEEcCCChh-------------hHHHHHhhCCCC---CCCcEEEEEeCch
Q 037627 282 K-SYLVVVDDAWQKE-------------TWESLKRAFPDN---KNGSRVIITTRIK 320 (858)
Q Consensus 282 ~-~~LlvlDd~~~~~-------------~~~~l~~~l~~~---~~gs~ilvTtR~~ 320 (858)
. +.+|++||++... ....+...+... ..+..+|.||...
T Consensus 57 ~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~ 112 (132)
T PF00004_consen 57 AKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSP 112 (132)
T ss_dssp STSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSG
T ss_pred ccceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCCh
Confidence 3 8999999997431 134444444332 2345667777653
No 162
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.0011 Score=69.36 Aligned_cols=179 Identities=8% Similarity=0.047 Sum_probs=102.7
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccc---cchh
Q 037627 186 SKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINV---LTRE 262 (858)
Q Consensus 186 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---~~~~ 262 (858)
+.+...+..+. -.....++|+.|+||+++|+.++...--..... ..+.......+.+...-..+. .+.+
T Consensus 12 ~~l~~~~~~~r-l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~p~~ 83 (325)
T PRK06871 12 QQITQAFQQGL-GHHALLFKADSGLGTEQLIRALAQWLMCQTPQG-------DQPCGQCHSCHLFQAGNHPDFHILEPID 83 (325)
T ss_pred HHHHHHHHcCC-cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHhcCCCCCEEEEcccc
Confidence 44555554432 345778999999999999999976311001000 011111122222221110000 0101
Q ss_pred hhhccHHHHHHHHHHH----hcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCch-hHHhhcCCCCceeec
Q 037627 263 LEEMREEDLERYLHNC----LQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRIK-EVAERSDENAYAHKL 335 (858)
Q Consensus 263 ~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~-~~~~~~~~~~~~~~l 335 (858)
......+++.+..... ..+++-++|+|+++.. +....++..+...++++.+|++|.+. .+..-.......+.+
T Consensus 84 ~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~ 163 (325)
T PRK06871 84 NKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLI 163 (325)
T ss_pred CCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeC
Confidence 1123344444332221 1356678899999866 46778888888777778787777665 344333333478999
Q ss_pred CCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHH
Q 037627 336 RFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAI 379 (858)
Q Consensus 336 ~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 379 (858)
.+++.++..+.+...... . ...+...+..++|.|..+
T Consensus 164 ~~~~~~~~~~~L~~~~~~----~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 164 HPPEEQQALDWLQAQSSA----E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred CCCCHHHHHHHHHHHhcc----C---hHHHHHHHHHcCCCHHHH
Confidence 999999999998876421 1 223567788999999633
No 163
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.77 E-value=6.6e-05 Score=79.55 Aligned_cols=43 Identities=16% Similarity=0.289 Sum_probs=27.7
Q ss_pred ccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccch
Q 037627 586 MVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPR 631 (858)
Q Consensus 586 ~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~ 631 (858)
+..+.+++.|++++|.++.+|. + ..+|+.|.+++|.....+|.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~ 90 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPG 90 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCc
Confidence 3346677777777777777762 2 23577777777655555554
No 164
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.77 E-value=0.00015 Score=79.08 Aligned_cols=174 Identities=14% Similarity=0.149 Sum_probs=96.9
Q ss_pred CceeeccccHHHHHHHHhcC-----------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHH
Q 037627 176 GNVVGFDDDVSKLLAKLLNK-----------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTK 244 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 244 (858)
.++.|.+..++++.+.+.-+ -...+-+.++|++|+|||++|+.+++ .....| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE---EEEecch-----
Confidence 45678999999888876421 12345788999999999999999998 444443 1121111
Q ss_pred HHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh-------------h---hHHHHHhhCCC--
Q 037627 245 DLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK-------------E---TWESLKRAFPD-- 306 (858)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-------------~---~~~~l~~~l~~-- 306 (858)
+. ...... ....+...+.....+.+.+|+||+++.. + .+..+...+..
T Consensus 253 -L~----~k~~Ge---------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~ 318 (438)
T PTZ00361 253 -LI----QKYLGD---------GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD 318 (438)
T ss_pred -hh----hhhcch---------HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc
Confidence 11 111100 0111222233333467889999997532 0 11222322221
Q ss_pred CCCCcEEEEEeCchhHHhh-cC---CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCCh
Q 037627 307 NKNGSRVIITTRIKEVAER-SD---ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLP 376 (858)
Q Consensus 307 ~~~gs~ilvTtR~~~~~~~-~~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 376 (858)
...+.+||+||........ .. .....+.+...+.++..++|..+......... -....++..+.|+-
T Consensus 319 ~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~d---vdl~~la~~t~g~s 389 (438)
T PTZ00361 319 SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAED---VDLEEFIMAKDELS 389 (438)
T ss_pred ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcC---cCHHHHHHhcCCCC
Confidence 2335678888875543322 11 11257899999999999999877654332111 12245555665543
No 165
>CHL00176 ftsH cell division protein; Validated
Probab=97.76 E-value=0.00033 Score=80.29 Aligned_cols=172 Identities=14% Similarity=0.175 Sum_probs=97.3
Q ss_pred CceeeccccHHHHHHH---HhcCC-------CCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHH
Q 037627 176 GNVVGFDDDVSKLLAK---LLNKE-------PRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKD 245 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~---L~~~~-------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 245 (858)
.+++|.++..+++.+. +..+. ...+-+.++|++|+|||+||+.++.. .... |+.++. .+
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~~p-----~i~is~----s~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AEVP-----FFSISG----SE 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----eeeccH----HH
Confidence 5678877766655444 33221 22456999999999999999999973 2222 333321 11
Q ss_pred HHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh------------hh----HHHHHhhCCC--C
Q 037627 246 LLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK------------ET----WESLKRAFPD--N 307 (858)
Q Consensus 246 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~------------~~----~~~l~~~l~~--~ 307 (858)
+.. ... ......+...+.......+.+|++||++.. .. +..+...+.. .
T Consensus 252 f~~----~~~---------g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 252 FVE----MFV---------GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred HHH----Hhh---------hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 110 000 001223344455555678899999999643 11 2233333322 2
Q ss_pred CCCcEEEEEeCchhHHh-hcC---CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCC
Q 037627 308 KNGSRVIITTRIKEVAE-RSD---ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRG 374 (858)
Q Consensus 308 ~~gs~ilvTtR~~~~~~-~~~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G 374 (858)
..+..||.||....... ... .....+.++..+.++-.++++.++..... .+ ......+++.+.|
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~--d~~l~~lA~~t~G 386 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SP--DVSLELIARRTPG 386 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-ch--hHHHHHHHhcCCC
Confidence 33556666776543222 111 11257888888999999999887755322 11 2345678888877
No 166
>PLN03150 hypothetical protein; Provisional
Probab=97.75 E-value=2.1e-05 Score=91.15 Aligned_cols=110 Identities=22% Similarity=0.356 Sum_probs=87.2
Q ss_pred CccEEEeccc-C-CCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECCCCccccceee
Q 037627 729 YLIDLRLSGK-I-EKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQ 806 (858)
Q Consensus 729 ~L~~L~l~~~-~-~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~ 806 (858)
.++.|+|+++ + +.+|..+.. +++|+.|+|++|.+++.+|..++.+++|+.|+|++|.+++. ++.....+++|+.|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~-L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCccccCCHHHhC-CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEE
Confidence 4788899885 3 467888877 79999999999999999999999999999999999999874 344456789999999
Q ss_pred ecCCCCCCeEEEccCc-cccccceeecccccCC-CC
Q 037627 807 LIDLNDLAQWQVEDGA-MPILRGLRVTNAYKLK-IP 840 (858)
Q Consensus 807 l~~~~~l~~~~~~~~~-l~~L~~L~l~~c~~L~-lp 840 (858)
+++|.-...+|...+. +.++..+++.+|+.+- .|
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9986544455544433 3567788999887666 54
No 167
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.74 E-value=0.0011 Score=69.18 Aligned_cols=179 Identities=15% Similarity=0.148 Sum_probs=100.3
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcccccc----
Q 037627 184 DVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVL---- 259 (858)
Q Consensus 184 ~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---- 259 (858)
..+.+...+..+. -...+.++|+.|+||+++|..+++..--.....+ ..... ..++..-..+..
T Consensus 12 ~~~~l~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~----------~~c~~-c~~~~~g~HPD~~~i~ 79 (319)
T PRK08769 12 AYDQTVAALDAGR-LGHGLLICGPEGLGKRAVALALAEHVLASGPDPA----------AAQRT-RQLIAAGTHPDLQLVS 79 (319)
T ss_pred HHHHHHHHHHcCC-cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCC----------CcchH-HHHHhcCCCCCEEEEe
Confidence 3445555554432 3457889999999999999988763111100000 00000 011111110000
Q ss_pred --chh-----hhhccHHHHHHHHHHH----hcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCch-hHHhh
Q 037627 260 --TRE-----LEEMREEDLERYLHNC----LQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRIK-EVAER 325 (858)
Q Consensus 260 --~~~-----~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~-~~~~~ 325 (858)
++. ......+++.+..... ..+++-++|+|+++.. ..-..++..+..-..++.+|++|.+. .+..-
T Consensus 80 ~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpT 159 (319)
T PRK08769 80 FIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPAT 159 (319)
T ss_pred cCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchH
Confidence 000 0112234433332221 1345679999999866 35667777777666677777777654 44433
Q ss_pred cCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 037627 326 SDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVL 382 (858)
Q Consensus 326 ~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 382 (858)
+......+.+.+++.+++.+.+.... . + +..+..++..++|.|+....+
T Consensus 160 IrSRCq~i~~~~~~~~~~~~~L~~~~----~-~---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 160 IRSRCQRLEFKLPPAHEALAWLLAQG----V-S---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred HHhhheEeeCCCcCHHHHHHHHHHcC----C-C---hHHHHHHHHHcCCCHHHHHHH
Confidence 33344788999999999998886531 1 1 234667899999999865543
No 168
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.73 E-value=0.00057 Score=74.35 Aligned_cols=148 Identities=22% Similarity=0.196 Sum_probs=89.9
Q ss_pred EEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHHhc
Q 037627 201 VISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQ 280 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 280 (858)
++.|+|+-++||||+++.+... .... .+++...+......-+.+ ....+...-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d---------------------~~~~~~~~~~ 92 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLD---------------------LLRAYIELKE 92 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHH---------------------HHHHHHHhhc
Confidence 9999999999999999777762 2222 555554332211111111 1111111111
Q ss_pred CceEEEEEEcCCChhhHHHHHhhCCCCCCCcEEEEEeCchhHH-----hhcCCCCceeecCCCChhHHHHHHHHHhcCCC
Q 037627 281 GKSYLVVVDDAWQKETWESLKRAFPDNKNGSRVIITTRIKEVA-----ERSDENAYAHKLRFLRSDESWELFCEKAFRKS 355 (858)
Q Consensus 281 ~~~~LlvlDd~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~~~-----~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~ 355 (858)
.++..|+||.|.....|......+.+.++. +|++|+-+.... .........+.+-||+-.|-..+-.. .
T Consensus 93 ~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~-----~ 166 (398)
T COG1373 93 REKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGE-----E 166 (398)
T ss_pred cCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccc-----c
Confidence 277899999999999999988888876666 888888876433 22233337799999999988765420 0
Q ss_pred CCChhHHHHHHHHHHHcCCChHHHHH
Q 037627 356 NGSEGLEKLGREMVEKCRGLPLAIVV 381 (858)
Q Consensus 356 ~~~~~~~~~~~~I~~~~~G~Plai~~ 381 (858)
....... ..-+-.-.+||.|.++..
T Consensus 167 ~~~~~~~-~~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 167 IEPSKLE-LLFEKYLETGGFPESVKA 191 (398)
T ss_pred cchhHHH-HHHHHHHHhCCCcHHHhC
Confidence 0011111 122333457899977654
No 169
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.72 E-value=7.5e-05 Score=80.13 Aligned_cols=119 Identities=18% Similarity=0.235 Sum_probs=75.6
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
..+++.+..++.+...|... +.+.++|++|+|||++|+.+++.......|+.+.|+.+.+.++..+++....
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r---- 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR---- 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC----
Confidence 45788889999999988754 4788899999999999999998544445678889999998887666554221
Q ss_pred ccccchhhhhccHHHHHHHHHHHh--cCceEEEEEEcCCChh---hHHHHHhhCC
Q 037627 256 INVLTRELEEMREEDLERYLHNCL--QGKSYLVVVDDAWQKE---TWESLKRAFP 305 (858)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDd~~~~~---~~~~l~~~l~ 305 (858)
.... ... .......+.+.... .+++++||+|++.... .+.++...+.
T Consensus 247 P~~v--gy~-~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 247 PNGV--GFR-RKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred CCCC--CeE-ecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 0000 000 00011122222222 2468999999997543 2444444443
No 170
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.72 E-value=0.00011 Score=78.05 Aligned_cols=32 Identities=13% Similarity=0.155 Sum_probs=16.6
Q ss_pred cccceeeecCCCCCCeEEEccCccccccceeeccc
Q 037627 800 HLLEILQLIDLNDLAQWQVEDGAMPILRGLRVTNA 834 (858)
Q Consensus 800 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c 834 (858)
++|++|.+.+|..+. +| .+-.++|+.|.++.|
T Consensus 156 sSLk~L~Is~c~~i~-LP--~~LP~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LP--EKLPESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCccc-Cc--ccccccCcEEEeccc
Confidence 466677776665432 11 112246666666554
No 171
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.72 E-value=7.9e-07 Score=91.20 Aligned_cols=235 Identities=17% Similarity=0.123 Sum_probs=132.9
Q ss_pred cCCcccceEeccC-Cccccc--CcccccCCCCcEEeccccccccccchhhhccccccccccccccccCCCCCccccccce
Q 037627 587 VKLVNLKYLRLTN-AHIDVI--PSCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGNFTGTLNIENLSNLQTLKY 663 (858)
Q Consensus 587 ~~l~~L~~L~L~~-n~i~~l--p~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l 663 (858)
..++.|++|+|.. ..++.. -.-...+++|++|++++|..+.. .+++.+ ..++.+++.+.+
T Consensus 187 ~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~--------~gv~~~---------~rG~~~l~~~~~ 249 (483)
T KOG4341|consen 187 RYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG--------NGVQAL---------QRGCKELEKLSL 249 (483)
T ss_pred HhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhc--------CcchHH---------hccchhhhhhhh
Confidence 3566677777766 334321 11123466777777777743322 122222 334555555555
Q ss_pred eecccccccCc----ccccCCCeeEEeecccccccc-hhhhhcCCCCCeEEeeccCCccccCCCC-CCCCCCccEEEecc
Q 037627 664 VERGSWAEINP----EKLVNLRDLRIISKYQEEEFS-FKSIAYLKNLQLLSIRLSDDTCFDSLQP-LSDCSYLIDLRLSG 737 (858)
Q Consensus 664 ~~~~~~~~~~~----~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~-l~~l~~L~~L~l~~ 737 (858)
.+|.......+ .....+.++++..|....... ...-..+..|+.|..+++.......+.. ...+++|+.|-+++
T Consensus 250 kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~ 329 (483)
T KOG4341|consen 250 KGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSG 329 (483)
T ss_pred cccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccc
Confidence 55442222211 133445566655654333222 1233456788888888764432212222 24568999999887
Q ss_pred c--CCC-CChhhhhccCCccEEEEecccCCCC--CccccCCCCCCCeeEeeccccCCce-E---EECCCCccccceeeec
Q 037627 738 K--IEK-LPEDLHEVLPNLECLSLKKSHLKED--PMPKLEKLPNLTILDLGLKSYGGKK-M---ICTTKGFHLLEILQLI 808 (858)
Q Consensus 738 ~--~~~-~p~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~~~~~~-~---~~~~~~~~~L~~L~l~ 808 (858)
. ++. --..+...++.|+.+++..|..... ....-.+++.|+.|.|+++...... + .....+...|+.|.+.
T Consensus 330 c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~ 409 (483)
T KOG4341|consen 330 CQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELD 409 (483)
T ss_pred cchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeec
Confidence 3 322 1223444578999999998874321 2222347899999999987643222 1 1222456788889999
Q ss_pred CCCCCCeEEEc-cCccccccceeecccccCC
Q 037627 809 DLNDLAQWQVE-DGAMPILRGLRVTNAYKLK 838 (858)
Q Consensus 809 ~~~~l~~~~~~-~~~l~~L~~L~l~~c~~L~ 838 (858)
+|+.+++-... ....++|+.+++.+|...+
T Consensus 410 n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 410 NCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred CCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 98877665432 3457899999999998766
No 172
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.68 E-value=0.004 Score=65.02 Aligned_cols=196 Identities=9% Similarity=0.037 Sum_probs=108.9
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccc---cch
Q 037627 185 VSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINV---LTR 261 (858)
Q Consensus 185 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---~~~ 261 (858)
-+++...+..+ .-...+.++|+.|+||+++|+.+++..- ...-. ..+.......+.+...-..+. .+.
T Consensus 12 ~~~l~~~~~~~-rl~hA~L~~G~~G~Gk~~lA~~~a~~ll-C~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (319)
T PRK06090 12 WQNWKAGLDAG-RIPGALLLQSDEGLGVESLVELFSRALL-CQNYQ-------SEACGFCHSCELMQSGNHPDLHVIKPE 82 (319)
T ss_pred HHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHc-CCCCC-------CCCCCCCHHHHHHHcCCCCCEEEEecC
Confidence 34555555433 2356789999999999999999876311 00000 000111111111111100000 000
Q ss_pred -hhhhccHHHHHHHHHHHh-----cCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCch-hHHhhcCCCCce
Q 037627 262 -ELEEMREEDLERYLHNCL-----QGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRIK-EVAERSDENAYA 332 (858)
Q Consensus 262 -~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~-~~~~~~~~~~~~ 332 (858)
.......+++.+. .+.+ .+..-++|+|+++.. .....++..+...++++.+|++|.+. .+..-+......
T Consensus 83 ~~~~~I~vdqiR~l-~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~ 161 (319)
T PRK06090 83 KEGKSITVEQIRQC-NRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQ 161 (319)
T ss_pred cCCCcCCHHHHHHH-HHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccee
Confidence 0112334444332 2222 245568999999866 46778888887777777777766654 444444444478
Q ss_pred eecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhHhcCCChHHHHHHHHHHHh
Q 037627 333 HKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVLGGLLSMKKPQEWRRVRDHLWQ 403 (858)
Q Consensus 333 ~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~~~~~w~~~~~~l~~ 403 (858)
+.+.+++.+++.+.+.... . + .+..++..++|.|+....+. .......+......+..
T Consensus 162 ~~~~~~~~~~~~~~L~~~~----~--~----~~~~~l~l~~G~p~~A~~~~---~~~~~~~~~~~~~~l~~ 219 (319)
T PRK06090 162 WVVTPPSTAQAMQWLKGQG----I--T----VPAYALKLNMGSPLKTLAMM---KEGGLEKYHKLERQLVD 219 (319)
T ss_pred EeCCCCCHHHHHHHHHHcC----C--c----hHHHHHHHcCCCHHHHHHHh---CCCcHHHHHHHHHHHHH
Confidence 9999999999999886531 1 1 23567899999998765442 22333444444444443
No 173
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.68 E-value=0.00013 Score=85.20 Aligned_cols=157 Identities=14% Similarity=0.142 Sum_probs=86.4
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCcccc---CCc-ceEEEEEeCCCCCHHHHHHHHH
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVK---NKF-DRCAWVSVSQDYDTKDLLLRII 251 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~---~~f-~~~~wv~~~~~~~~~~~~~~i~ 251 (858)
+.++||+.+++++++.|.... ..-+.++|++|+|||++|+.+++..... ..+ +..+|.. +.. .++
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~----~ll 254 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIG----SLL 254 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHH----HHh
Confidence 469999999999999987753 3355789999999999999998731111 111 3333321 111 111
Q ss_pred HhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh----------hhHHHHHhhCCCCCCCcEEEEEeCchh
Q 037627 252 RSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK----------ETWESLKRAFPDNKNGSRVIITTRIKE 321 (858)
Q Consensus 252 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~----------~~~~~l~~~l~~~~~gs~ilvTtR~~~ 321 (858)
. .... ...-.+.+...+...-+..+.+|++|+++.. .+...+..++...+ ..++|-+|..++
T Consensus 255 a---G~~~----~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~E 326 (758)
T PRK11034 255 A---GTKY----RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQE 326 (758)
T ss_pred c---ccch----hhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChHH
Confidence 0 0000 0000111112222222356789999999742 12222333322222 345565555444
Q ss_pred HHhh------cCCCCceeecCCCChhHHHHHHHHHh
Q 037627 322 VAER------SDENAYAHKLRFLRSDESWELFCEKA 351 (858)
Q Consensus 322 ~~~~------~~~~~~~~~l~~L~~~e~~~l~~~~~ 351 (858)
.... .......+.+++.+.+++.+++....
T Consensus 327 ~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 327 FSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 3211 11122679999999999999998654
No 174
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.67 E-value=0.00077 Score=71.67 Aligned_cols=165 Identities=13% Similarity=0.088 Sum_probs=91.2
Q ss_pred eee-ccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccc
Q 037627 178 VVG-FDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKI 256 (858)
Q Consensus 178 ~vG-r~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 256 (858)
++| -+.-.+.+...+..+. -.....++|+.|+||||+|+.+++..--....... +.......+.+...-..
T Consensus 7 i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~~~~hp 78 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRIDSGNHP 78 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHhcCCCC
Confidence 456 5556666666665442 35677999999999999999987631101100000 01111111111110000
Q ss_pred ccc--chhhhhccHHHHHHHHHHH----hcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCch-hHHhhcC
Q 037627 257 NVL--TRELEEMREEDLERYLHNC----LQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRIK-EVAERSD 327 (858)
Q Consensus 257 ~~~--~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~-~~~~~~~ 327 (858)
... ..+......+++.+.+... ..+.+-++|+|+++.. +....++..+...+.++.+|++|.+. .+.....
T Consensus 79 D~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIr 158 (329)
T PRK08058 79 DVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTIL 158 (329)
T ss_pred CEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHH
Confidence 000 0001112233443333222 2345668999999865 35667888887767778787777654 3333333
Q ss_pred CCCceeecCCCChhHHHHHHHHH
Q 037627 328 ENAYAHKLRFLRSDESWELFCEK 350 (858)
Q Consensus 328 ~~~~~~~l~~L~~~e~~~l~~~~ 350 (858)
.....+++.+++.++..+.+...
T Consensus 159 SRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 159 SRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred hhceeeeCCCCCHHHHHHHHHHc
Confidence 33478999999999998888653
No 175
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.66 E-value=1.1e-06 Score=95.81 Aligned_cols=105 Identities=24% Similarity=0.229 Sum_probs=57.2
Q ss_pred ccccccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccch-hhhcccccccc---ccccccccCCCCCcc
Q 037627 582 LPEEMVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPR-EICELKELRHL---IGNFTGTLNIENLSN 657 (858)
Q Consensus 582 lp~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~-~~~~l~~L~~L---~~~~~~~~~~~~l~~ 657 (858)
+..++.-++.|+.|||++|+++... .+..+++|++|||++| .+..+|. ....+. |+.| +|..+...++.+|.+
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~gie~Lks 255 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNNALTTLRGIENLKS 255 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeeeecccHHHhhhhHHhhhh
Confidence 3345556677777777777777664 5667777777777777 4444443 111111 3333 222333335556666
Q ss_pred ccccceeeccccc---ccCcccccCCCeeEEeecc
Q 037627 658 LQTLKYVERGSWA---EINPEKLVNLRDLRIISKY 689 (858)
Q Consensus 658 L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~ 689 (858)
|+.||+++|-+.. ..++..+..|+.|++.+|.
T Consensus 256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 6666666665322 2233345555566665554
No 176
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.66 E-value=0.00019 Score=66.29 Aligned_cols=40 Identities=30% Similarity=0.271 Sum_probs=28.7
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCC
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQD 240 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 240 (858)
...+.|+|++|+||||+|+.++.. .......+++++.+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~ 41 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDI 41 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEc
Confidence 357899999999999999999983 3332234566655443
No 177
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.64 E-value=0.00045 Score=78.16 Aligned_cols=175 Identities=15% Similarity=0.142 Sum_probs=95.8
Q ss_pred CCceeeccccHHHHHHHHh---cC-------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHH
Q 037627 175 EGNVVGFDDDVSKLLAKLL---NK-------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTK 244 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~---~~-------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 244 (858)
-++++|.+...+++.+.+. .+ ....+-+.++|++|+|||+||+.++.. .... ++.++. .
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~~~-----~~~i~~----~ 122 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGVP-----FFSISG----S 122 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCC-----eeeccH----H
Confidence 3567888777666554432 21 223456899999999999999999973 2222 222221 1
Q ss_pred HHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh------------hhH----HHHHhhCCC--
Q 037627 245 DLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK------------ETW----ESLKRAFPD-- 306 (858)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~------------~~~----~~l~~~l~~-- 306 (858)
++.. .... .....+...+.......+.+|+|||++.. +.+ ..+...+..
T Consensus 123 ~~~~----~~~g---------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~ 189 (495)
T TIGR01241 123 DFVE----MFVG---------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG 189 (495)
T ss_pred HHHH----HHhc---------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc
Confidence 1111 1000 01223334444444567889999999642 111 223333321
Q ss_pred CCCCcEEEEEeCchh-HHhhcC---CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCCh
Q 037627 307 NKNGSRVIITTRIKE-VAERSD---ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLP 376 (858)
Q Consensus 307 ~~~gs~ilvTtR~~~-~~~~~~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 376 (858)
...+..||.||.... +..... .....+.++..+.++-.+++.......... + ......|++.+.|.-
T Consensus 190 ~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~--~~~l~~la~~t~G~s 260 (495)
T TIGR01241 190 TNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-P--DVDLKAVARRTPGFS 260 (495)
T ss_pred CCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-c--chhHHHHHHhCCCCC
Confidence 223455666665543 111111 122578899889988889888776543221 1 123457888887743
No 178
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.61 E-value=0.002 Score=68.26 Aligned_cols=179 Identities=9% Similarity=0.038 Sum_probs=102.3
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcccccc----c
Q 037627 185 VSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVL----T 260 (858)
Q Consensus 185 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~ 260 (858)
-+++...+..+. -.....++|+.|+||+++|..++...-=...-+ ..+.......+.+... ..+.. +
T Consensus 11 ~~~l~~~~~~~r-l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~-------~~~Cg~C~sC~~~~~g-~HPD~~~i~p 81 (334)
T PRK07993 11 YEQLVGSYQAGR-GHHALLIQALPGMGDDALIYALSRWLMCQQPQG-------HKSCGHCRGCQLMQAG-THPDYYTLTP 81 (334)
T ss_pred HHHHHHHHHcCC-cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHHcC-CCCCEEEEec
Confidence 345566555442 356788999999999999999876310000000 0011111111222111 11100 0
Q ss_pred hhh-hhccHHHHHHHHHHH----hcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCch-hHHhhcCCCCce
Q 037627 261 REL-EEMREEDLERYLHNC----LQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRIK-EVAERSDENAYA 332 (858)
Q Consensus 261 ~~~-~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~-~~~~~~~~~~~~ 332 (858)
+.. .....+++.+..... ..+++-++|+|+++.. +....++..+...+.++.+|++|.+. .+..-+......
T Consensus 82 ~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~ 161 (334)
T PRK07993 82 EKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRL 161 (334)
T ss_pred ccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcccc
Confidence 100 123344444433322 1356779999999866 45677888887777777777777664 344333333367
Q ss_pred eecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHH
Q 037627 333 HKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAI 379 (858)
Q Consensus 333 ~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 379 (858)
+.+.+++.+++.+.+..... . + .+.+..++..++|.|...
T Consensus 162 ~~~~~~~~~~~~~~L~~~~~--~--~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 162 HYLAPPPEQYALTWLSREVT--M--S---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred ccCCCCCHHHHHHHHHHccC--C--C---HHHHHHHHHHcCCCHHHH
Confidence 89999999999988865321 1 1 234678899999999644
No 179
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.60 E-value=0.0019 Score=68.87 Aligned_cols=173 Identities=14% Similarity=0.176 Sum_probs=97.9
Q ss_pred CceeeccccHHH-HHHHHhc-CCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcc--eEEEEEeCCCCCHHHHHHHHH
Q 037627 176 GNVVGFDDDVSK-LLAKLLN-KEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFD--RCAWVSVSQDYDTKDLLLRII 251 (858)
Q Consensus 176 ~~~vGr~~~~~~-l~~~L~~-~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~ 251 (858)
..++|-...... +...+.. ++.....+.|+|..|.|||.|++++++ ....... .+++++ .+.....++
T Consensus 88 nFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~------se~f~~~~v 159 (408)
T COG0593 88 NFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT------SEDFTNDFV 159 (408)
T ss_pred heeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc------HHHHHHHHH
Confidence 344565443332 2333332 233477999999999999999999998 4444443 344432 334444444
Q ss_pred HhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh---hH-HHHHhhCCCC-CCCcEEEEEeCchh-----
Q 037627 252 RSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE---TW-ESLKRAFPDN-KNGSRVIITTRIKE----- 321 (858)
Q Consensus 252 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~---~~-~~l~~~l~~~-~~gs~ilvTtR~~~----- 321 (858)
..+.. .-.+.+++.. .-=++++||++-.. .| +.+.+.+... ..|-.||+|++...
T Consensus 160 ~a~~~-------------~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~ 224 (408)
T COG0593 160 KALRD-------------NEMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNG 224 (408)
T ss_pred HHHHh-------------hhHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhcc
Confidence 43321 1123344444 33488999997432 22 3343333321 12337999986542
Q ss_pred ----HHhhcCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCC
Q 037627 322 ----VAERSDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRG 374 (858)
Q Consensus 322 ----~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G 374 (858)
+......+ -.+.+.+.+.+....++.+.+.......+ ++++.-|++....
T Consensus 225 ~~~rL~SR~~~G-l~~~I~~Pd~e~r~aiL~kka~~~~~~i~--~ev~~~la~~~~~ 278 (408)
T COG0593 225 LEDRLRSRLEWG-LVVEIEPPDDETRLAILRKKAEDRGIEIP--DEVLEFLAKRLDR 278 (408)
T ss_pred ccHHHHHHHhce-eEEeeCCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHhhc
Confidence 22233333 68999999999999999997765554423 3444444444443
No 180
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.57 E-value=1.3e-06 Score=89.62 Aligned_cols=253 Identities=17% Similarity=0.152 Sum_probs=117.9
Q ss_pred ccCCcccceEeccCCc-cc--ccCcccccCCCCcEEeccccccccccchhhhccccccccccccccccCCCCCccccccc
Q 037627 586 MVKLVNLKYLRLTNAH-ID--VIPSCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGNFTGTLNIENLSNLQTLK 662 (858)
Q Consensus 586 ~~~l~~L~~L~L~~n~-i~--~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~ 662 (858)
-.++++++.|++.++. ++ .+-+--..+++|++|++..|..++.. .|++| ...+++|++|+
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~--------~Lk~l---------a~gC~kL~~lN 222 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDV--------SLKYL---------AEGCRKLKYLN 222 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHH--------HHHHH---------HHhhhhHHHhh
Confidence 4456666666666654 22 11111134667777777766332221 11111 22355555555
Q ss_pred eeeccccccc----CcccccCCCeeEEeecccccccch-hhhhcCCCCCeEEeeccCCccccC-CCCCCCCCCccEEEec
Q 037627 663 YVERGSWAEI----NPEKLVNLRDLRIISKYQEEEFSF-KSIAYLKNLQLLSIRLSDDTCFDS-LQPLSDCSYLIDLRLS 736 (858)
Q Consensus 663 l~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~ 736 (858)
++-+...... ......+++++...+|...+...+ ..-+.+..+..+++..|....... ...-..+..|+.|+.+
T Consensus 223 lSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s 302 (483)
T KOG4341|consen 223 LSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYS 302 (483)
T ss_pred hccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhccc
Confidence 5555422221 123444455555554432221110 111222334444444442111111 1112235566777766
Q ss_pred cc--CCCCCh-hhhhccCCccEEEEeccc-CCCCCcccc-CCCCCCCeeEeeccccCCce-EEECCCCccccceeeecCC
Q 037627 737 GK--IEKLPE-DLHEVLPNLECLSLKKSH-LKEDPMPKL-EKLPNLTILDLGLKSYGGKK-MICTTKGFHLLEILQLIDL 810 (858)
Q Consensus 737 ~~--~~~~p~-~~~~~l~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~L~~n~~~~~~-~~~~~~~~~~L~~L~l~~~ 810 (858)
+. ++..+- .+....++|+.|-++.|+ ++..-...+ .+++.|+.|++..+...... +......+|.|+.|.+++|
T Consensus 303 ~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshc 382 (483)
T KOG4341|consen 303 SCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHC 382 (483)
T ss_pred CCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhh
Confidence 62 322222 233345777777777775 332222222 25677777777665433221 2223345677777777777
Q ss_pred CCCCeE-----EEccCccccccceeecccccCC--CCc---ccCCCCCCceecCC
Q 037627 811 NDLAQW-----QVEDGAMPILRGLRVTNAYKLK--IPE---RLKSIPLPTEWECD 855 (858)
Q Consensus 811 ~~l~~~-----~~~~~~l~~L~~L~l~~c~~L~--lp~---~l~~L~~L~~~~c~ 855 (858)
..+++. .....++..|+.+.+++||.++ .-. ..++|+.++..+|.
T Consensus 383 e~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 383 ELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 655554 2223456667777777777655 222 23345555555553
No 181
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.55 E-value=0.0082 Score=63.82 Aligned_cols=210 Identities=14% Similarity=0.116 Sum_probs=127.2
Q ss_pred ccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHH-HHHhcCccccCCcceEEEEEeCCC---CCHHHHHHHHHHhccc
Q 037627 181 FDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLA-RKLYHNNDVKNKFDRCAWVSVSQD---YDTKDLLLRIIRSFKI 256 (858)
Q Consensus 181 r~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa-~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~ 256 (858)
|.+.+++|..||.+.. -..|+|.||-|+||+.|+ .++.++ .+.++.+++.+- .+-...+..++.++|.
T Consensus 1 R~e~~~~L~~wL~e~~--~TFIvV~GPrGSGK~elV~d~~L~~------r~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY 72 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP--NTFIVVQGPRGSGKRELVMDHVLKD------RKNVLVIDCDQIVKARGDAAFIKNLASQVGY 72 (431)
T ss_pred CchHHHHHHHHHhcCC--CeEEEEECCCCCCccHHHHHHHHhC------CCCEEEEEChHhhhccChHHHHHHHHHhcCC
Confidence 5677899999998765 459999999999999999 777763 122677766432 3445667777777664
Q ss_pred ccc-------------------c--hhhhhccHHHHHH-------HHHH-------------------Hhc---CceEEE
Q 037627 257 NVL-------------------T--RELEEMREEDLER-------YLHN-------------------CLQ---GKSYLV 286 (858)
Q Consensus 257 ~~~-------------------~--~~~~~~~~~~~~~-------~l~~-------------------~l~---~~~~Ll 286 (858)
-.. + ....+....++.+ .+++ ++. ..+-+|
T Consensus 73 ~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVV 152 (431)
T PF10443_consen 73 FPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVV 152 (431)
T ss_pred CcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEE
Confidence 321 0 0001111112211 1111 010 225699
Q ss_pred EEEcCCChh-----hHHHH---HhhCCCCCCCcEEEEEeCchhHHh----hcCC-CCceeecCCCChhHHHHHHHHHhcC
Q 037627 287 VVDDAWQKE-----TWESL---KRAFPDNKNGSRVIITTRIKEVAE----RSDE-NAYAHKLRFLRSDESWELFCEKAFR 353 (858)
Q Consensus 287 vlDd~~~~~-----~~~~l---~~~l~~~~~gs~ilvTtR~~~~~~----~~~~-~~~~~~l~~L~~~e~~~l~~~~~~~ 353 (858)
|+||+.... .|+.+ ...+-. .+-.+||++|-+..... .... ....+.|...+.+.|..++..+...
T Consensus 153 VIdnF~~k~~~~~~iy~~laeWAa~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~ 231 (431)
T PF10443_consen 153 VIDNFLHKAEENDFIYDKLAEWAASLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDE 231 (431)
T ss_pred EEcchhccCcccchHHHHHHHHHHHHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcc
Confidence 999985321 12222 222222 23456888887664433 2211 1267899999999999999998765
Q ss_pred CCCC-------------C-----hhHHHHHHHHHHHcCCChHHHHHHHhHhcCC-C-hHHHHHHHH
Q 037627 354 KSNG-------------S-----EGLEKLGREMVEKCRGLPLAIVVLGGLLSMK-K-PQEWRRVRD 399 (858)
Q Consensus 354 ~~~~-------------~-----~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~-~-~~~w~~~~~ 399 (858)
.... . ..........++.+||=-.-+..+++.++.. + ....+.+.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 232 DTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred cccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4211 0 1234556778899999999999999999766 3 344444443
No 182
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0013 Score=71.42 Aligned_cols=174 Identities=14% Similarity=0.164 Sum_probs=102.1
Q ss_pred CceeeccccHHHHHHHHhcC----------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHH
Q 037627 176 GNVVGFDDDVSKLLAKLLNK----------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKD 245 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 245 (858)
.++=|.++.+.++.+.+..- -...+=|.++|++|+|||.||++++. ...-. ++.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAg--el~vP-----f~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAG--ELGVP-----FLSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhh--hcCCc-----eEeecch-----
Confidence 45668899888887776431 12457789999999999999999998 34333 3444432
Q ss_pred HHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh-------------hHHHHHhhCCC---C-C
Q 037627 246 LLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE-------------TWESLKRAFPD---N-K 308 (858)
Q Consensus 246 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-------------~~~~l~~~l~~---~-~ 308 (858)
+|.....+ .+.+.+.+.+.+.-...++++++|+++... -..+++..+.. . .
T Consensus 258 ---eivSGvSG---------ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~ 325 (802)
T KOG0733|consen 258 ---EIVSGVSG---------ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKT 325 (802)
T ss_pred ---hhhcccCc---------ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccccc
Confidence 22222222 234566666777777889999999998531 12334433321 1 1
Q ss_pred CCcEEEE---EeCchhHHhh---cCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCCh
Q 037627 309 NGSRVII---TTRIKEVAER---SDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLP 376 (858)
Q Consensus 309 ~gs~ilv---TtR~~~~~~~---~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 376 (858)
.|-.||| |+|...+... .+.....|.+.-=++.+-.++++..+.+-..... =..++|++.+-|+-
T Consensus 326 ~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~---~d~~qlA~lTPGfV 396 (802)
T KOG0733|consen 326 KGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGD---FDFKQLAKLTPGFV 396 (802)
T ss_pred CCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCC---cCHHHHHhcCCCcc
Confidence 1222333 5555433322 2222256777777777767777666654333211 12466777777764
No 183
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.53 E-value=0.00075 Score=76.81 Aligned_cols=48 Identities=15% Similarity=0.227 Sum_probs=39.9
Q ss_pred CCceeeccccHHHHHHHHhcCC---CCcEEEEEEecCcchHHHHHHHHhcC
Q 037627 175 EGNVVGFDDDVSKLLAKLLNKE---PRRFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~~~---~~~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
-++++|-+..++++..++.... ...++++|+|++|+||||+++.++..
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999998886542 23468999999999999999999973
No 184
>PTZ00494 tuzin-like protein; Provisional
Probab=97.52 E-value=0.029 Score=59.24 Aligned_cols=168 Identities=10% Similarity=0.099 Sum_probs=100.1
Q ss_pred CcCCceeeccccHHHHHHHHhcCC-CCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHH
Q 037627 173 SIEGNVVGFDDDVSKLLAKLLNKE-PRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRII 251 (858)
Q Consensus 173 ~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 251 (858)
..+..+|.|++|-..+...|...+ ..+++++++|.-|.||++|.+.....+. -..++|++... ++-++.+.
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~---EDtLrsVV 439 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGT---EDTLRSVV 439 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCC---cchHHHHH
Confidence 345678999999998888887653 4688999999999999999999886211 23677888654 45578888
Q ss_pred HhccccccchhhhhccHHHHHHHHHH---HhcCceEEEEEE--cCCChh-hHHHHHhhCCCCCCCcEEEEEeCchhHHh-
Q 037627 252 RSFKINVLTRELEEMREEDLERYLHN---CLQGKSYLVVVD--DAWQKE-TWESLKRAFPDNKNGSRVIITTRIKEVAE- 324 (858)
Q Consensus 252 ~~l~~~~~~~~~~~~~~~~~~~~l~~---~l~~~~~LlvlD--d~~~~~-~~~~l~~~l~~~~~gs~ilvTtR~~~~~~- 324 (858)
+.++.+.... -..-.+-+.+.... ...++.-+||+- +-.+.. .+.+... |.....-++|++----+.+..
T Consensus 440 KALgV~nve~--CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~va-LacDrRlCHvv~EVplESLT~~ 516 (664)
T PTZ00494 440 RALGVSNVEV--CGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVS-LVSDCQACHIVLAVPMKALTPL 516 (664)
T ss_pred HHhCCCChhh--hccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHH-HHccchhheeeeechHhhhchh
Confidence 8888764311 11112222222222 234555555543 332322 2222221 222223456666443332221
Q ss_pred -hcCCCCceeecCCCChhHHHHHHHHHh
Q 037627 325 -RSDENAYAHKLRFLRSDESWELFCEKA 351 (858)
Q Consensus 325 -~~~~~~~~~~l~~L~~~e~~~l~~~~~ 351 (858)
..-+...-|-+.+|+.++|.++..+..
T Consensus 517 n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 517 NVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hccCccceeEecCCcCHHHHHHHHhccc
Confidence 111222568899999999999987754
No 185
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.50 E-value=0.00072 Score=74.28 Aligned_cols=192 Identities=17% Similarity=0.182 Sum_probs=117.5
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
+++||-+--...|...+..+. -..--...|+-|+||||+|+.++.-..-.. | ....++......+.|...-.
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhhcCCc
Confidence 467999999999999887663 233456789999999999999886211110 0 11222222333333332200
Q ss_pred cccc-chhhhhccHHHHHHHHHHHh----cCceEEEEEEcCCC--hhhHHHHHhhCCCCCCCcEEEEEeCch-hHHhhcC
Q 037627 256 INVL-TRELEEMREEDLERYLHNCL----QGKSYLVVVDDAWQ--KETWESLKRAFPDNKNGSRVIITTRIK-EVAERSD 327 (858)
Q Consensus 256 ~~~~-~~~~~~~~~~~~~~~l~~~l----~~~~~LlvlDd~~~--~~~~~~l~~~l~~~~~gs~ilvTtR~~-~~~~~~~ 327 (858)
.+.- .+.......+++.+.+.+.. .++-=+.|+|+|+- ...|..++..+-..+...+.|++|.+. .+..-.-
T Consensus 88 ~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIl 167 (515)
T COG2812 88 IDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTIL 167 (515)
T ss_pred ccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhh
Confidence 0000 01111122344433333322 35556999999984 467888888887767677777766665 3333333
Q ss_pred CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChH
Q 037627 328 ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPL 377 (858)
Q Consensus 328 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl 377 (858)
.....+.++.++.++....+...+.......+ ++...-|++..+|...
T Consensus 168 SRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e--~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 168 SRCQRFDFKRLDLEEIAKHLAAILDKEGINIE--EDALSLIARAAEGSLR 215 (515)
T ss_pred hccccccccCCCHHHHHHHHHHHHHhcCCccC--HHHHHHHHHHcCCChh
Confidence 33478999999999999999888866554333 5666778888888654
No 186
>PRK08116 hypothetical protein; Validated
Probab=97.49 E-value=0.00054 Score=70.29 Aligned_cols=103 Identities=23% Similarity=0.351 Sum_probs=57.0
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNC 278 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 278 (858)
...+.|+|.+|+|||.||..+++. .......++++++ .+++..+........ ...... +.+.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~~------~~ll~~i~~~~~~~~------~~~~~~----~~~~ 175 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVNF------PQLLNRIKSTYKSSG------KEDENE----IIRS 175 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHhccc------cccHHH----HHHH
Confidence 346899999999999999999984 3322334666653 344555544332211 011112 2233
Q ss_pred hcCceEEEEEEcCC--ChhhHHH--HHhhCCC-CCCCcEEEEEeCch
Q 037627 279 LQGKSYLVVVDDAW--QKETWES--LKRAFPD-NKNGSRVIITTRIK 320 (858)
Q Consensus 279 l~~~~~LlvlDd~~--~~~~~~~--l~~~l~~-~~~gs~ilvTtR~~ 320 (858)
+.+-. ||||||+. ...+|.. +...+.. ...+..+|+||...
T Consensus 176 l~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 176 LVNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred hcCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 33334 89999994 3334432 3332222 12345588888643
No 187
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.44 E-value=0.00086 Score=63.13 Aligned_cols=136 Identities=15% Similarity=0.204 Sum_probs=73.6
Q ss_pred eccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccC------------------CcceEEEEEeCCCC
Q 037627 180 GFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKN------------------KFDRCAWVSVSQDY 241 (858)
Q Consensus 180 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~------------------~f~~~~wv~~~~~~ 241 (858)
|-+...+.+...+..+. -...+.++|+.|+||+++|..+++..--.. ......|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~- 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK- 78 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS-
T ss_pred CcHHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc-
Confidence 33455566666665442 345689999999999999999876311111 1122333322211
Q ss_pred CHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHHh-----cCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEE
Q 037627 242 DTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCL-----QGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVI 314 (858)
Q Consensus 242 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~il 314 (858)
......+++. .+...+ .++.=++|+||++.. +....++..+.....++++|
T Consensus 79 ---------------------~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 79 ---------------------KKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp ---------------------SSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred ---------------------cchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 0012233333 222222 245669999999865 46777888877777788898
Q ss_pred EEeCchh-HHhhcCCCCceeecCCCC
Q 037627 315 ITTRIKE-VAERSDENAYAHKLRFLR 339 (858)
Q Consensus 315 vTtR~~~-~~~~~~~~~~~~~l~~L~ 339 (858)
++|.+.. +..-.......+.+.+++
T Consensus 137 L~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEECChHHChHHHHhhceEEecCCCC
Confidence 8888764 333333333556665553
No 188
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0035 Score=64.05 Aligned_cols=182 Identities=15% Similarity=0.204 Sum_probs=102.3
Q ss_pred ceeeccccHHHHHHHHhcC-----------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHH
Q 037627 177 NVVGFDDDVSKLLAKLLNK-----------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKD 245 (858)
Q Consensus 177 ~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 245 (858)
.+=|-++.+++|.+...-+ =..++=|.+||++|.|||-||+++++ +....| +.+... +
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----IrvvgS----E 220 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVGS----E 220 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEeccH----H
Confidence 3446888898888876432 13467789999999999999999998 444443 443321 2
Q ss_pred HHHHHHHhccccccchhhhhccHHHHHHHHHHHhc-CceEEEEEEcCCCh-------------h---hHHHHHhhCCCC-
Q 037627 246 LLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQ-GKSYLVVVDDAWQK-------------E---TWESLKRAFPDN- 307 (858)
Q Consensus 246 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDd~~~~-------------~---~~~~l~~~l~~~- 307 (858)
+.+..-+.+ ..+...+.+..+ ..+..|.+|.++.. + .+-+++..+..+
T Consensus 221 ----lVqKYiGEG----------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD 286 (406)
T COG1222 221 ----LVQKYIGEG----------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD 286 (406)
T ss_pred ----HHHHHhccc----------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC
Confidence 222211111 123333333333 56899999998742 1 133445555433
Q ss_pred -CCCcEEEEEeCchhHHhhc----CCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCCh----HH
Q 037627 308 -KNGSRVIITTRIKEVAERS----DENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLP----LA 378 (858)
Q Consensus 308 -~~gs~ilvTtR~~~~~~~~----~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P----la 378 (858)
..+.|||.+|...++.... +.....++++.=+.+.-.++|.-++..-..... --.+.|++.|.|.- -|
T Consensus 287 ~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~d---vd~e~la~~~~g~sGAdlka 363 (406)
T COG1222 287 PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADD---VDLELLARLTEGFSGADLKA 363 (406)
T ss_pred CCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccC---cCHHHHHHhcCCCchHHHHH
Confidence 3467899888666543221 111145677644445555666666655443211 11355677777664 33
Q ss_pred HHHHHhHh
Q 037627 379 IVVLGGLL 386 (858)
Q Consensus 379 i~~~~~~l 386 (858)
+.+=|+++
T Consensus 364 ictEAGm~ 371 (406)
T COG1222 364 ICTEAGMF 371 (406)
T ss_pred HHHHHhHH
Confidence 44445544
No 189
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.41 E-value=0.005 Score=63.26 Aligned_cols=54 Identities=26% Similarity=0.353 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHH
Q 037627 185 VSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLL 247 (858)
Q Consensus 185 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 247 (858)
++++..++..+ +.+.|.|++|+|||++|+.++. .... ..+.+++....+..+++
T Consensus 11 ~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 11 TSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHh
Confidence 34444444433 3677999999999999999996 3332 24455655555544443
No 190
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0035 Score=69.41 Aligned_cols=185 Identities=17% Similarity=0.056 Sum_probs=99.6
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
.+|+--....++.......+.....-|.|.|+.|+|||+||++++.... +...-.+.+++++.-.... +..|
T Consensus 408 ~d~i~~~s~kke~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~--~e~i----- 479 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSS--LEKI----- 479 (952)
T ss_pred CceeecchhhhhhhhhhcccccccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchh--HHHH-----
Confidence 3444444444444444444434566899999999999999999998533 4444556666665432111 1111
Q ss_pred ccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh--------hhHH----HHHhhCC-----CCCCCcE--EEEE
Q 037627 256 INVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK--------ETWE----SLKRAFP-----DNKNGSR--VIIT 316 (858)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--------~~~~----~l~~~l~-----~~~~gs~--ilvT 316 (858)
...+...+.+.+...+-+|||||++.. .+|. .+..++. ....+.+ +|.|
T Consensus 480 ------------Qk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat 547 (952)
T KOG0735|consen 480 ------------QKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIAT 547 (952)
T ss_pred ------------HHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEe
Confidence 123344555667788999999999732 1121 1111111 1223333 3444
Q ss_pred eCchhHH-hhc---CCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCC-hHHHHHH
Q 037627 317 TRIKEVA-ERS---DENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGL-PLAIVVL 382 (858)
Q Consensus 317 tR~~~~~-~~~---~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~-Plai~~~ 382 (858)
.....-. ... .....++.+.++...+-.++++........+ ...+...-+..+|+|+ |.-+.++
T Consensus 548 ~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~--~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 548 GQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSD--ITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred chhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhh--hhhHHHHHHHHhcCCccchhHHHH
Confidence 4332211 111 1111567899999888888887765433321 1123334488888876 3334433
No 191
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.38 E-value=0.0019 Score=76.89 Aligned_cols=174 Identities=14% Similarity=0.129 Sum_probs=97.0
Q ss_pred CceeeccccHHHHHHHHhcC-----------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHH
Q 037627 176 GNVVGFDDDVSKLLAKLLNK-----------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTK 244 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 244 (858)
.++.|.+..++++.+.+.-+ -...+-+.++|++|+|||++|+.+++ .....| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~--e~~~~f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVAT--ESGANF-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hcCCCE-----EEEehH----
Confidence 45678888777777665421 12345688999999999999999998 333333 222211
Q ss_pred HHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh--------------hhHHHHHhhCCC--CC
Q 037627 245 DLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK--------------ETWESLKRAFPD--NK 308 (858)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--------------~~~~~l~~~l~~--~~ 308 (858)
.++....+. ....+...+...-...+.+|+||+++.. ....++...+.. ..
T Consensus 522 ----~l~~~~vGe---------se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 522 ----EILSKWVGE---------SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred ----HHhhcccCc---------HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 111111110 1122333333333567899999998642 112334444442 22
Q ss_pred CCcEEEEEeCchhHHh-hcC---CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCCh
Q 037627 309 NGSRVIITTRIKEVAE-RSD---ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLP 376 (858)
Q Consensus 309 ~gs~ilvTtR~~~~~~-~~~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 376 (858)
.+..||.||..+.... ... .....+.++..+.++-.++|..+......... .....+++.+.|.-
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~---~~l~~la~~t~g~s 657 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAED---VDLEELAEMTEGYT 657 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCcc---CCHHHHHHHcCCCC
Confidence 3445666775554322 111 12267888888888888888766543322111 12456777787765
No 192
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.38 E-value=0.0034 Score=74.50 Aligned_cols=117 Identities=14% Similarity=0.172 Sum_probs=65.2
Q ss_pred CCceeeccccHHHHHHHHhcC-------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHH
Q 037627 175 EGNVVGFDDDVSKLLAKLLNK-------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLL 247 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 247 (858)
...++|.+..++.+...+... .....++.++|++|+|||+||+.+++. . +...+.++.+..... ...
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~-~~~ 526 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEK-HTV 526 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhc-ccH
Confidence 356889999999888887632 112346899999999999999999973 3 223455555432111 111
Q ss_pred HHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh--hhHHHHHhhCC
Q 037627 248 LRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK--ETWESLKRAFP 305 (858)
Q Consensus 248 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~ 305 (858)
..+ ++.+.. -........+.+.++. ...-+++||+++.. +.+..|...+.
T Consensus 527 ~~l---ig~~~g--yvg~~~~~~l~~~~~~---~p~~VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 527 SRL---IGAPPG--YVGFEQGGLLTEAVRK---HPHCVLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred HHH---hcCCCC--CcccchhhHHHHHHHh---CCCeEEEEechhhcCHHHHHHHHHhhc
Confidence 111 121110 0000011223333322 33459999999854 45566666554
No 193
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.38 E-value=0.0023 Score=62.07 Aligned_cols=176 Identities=17% Similarity=0.194 Sum_probs=100.6
Q ss_pred cCCceeeccccHHH---HHHHHhcC----CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHH
Q 037627 174 IEGNVVGFDDDVSK---LLAKLLNK----EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDL 246 (858)
Q Consensus 174 ~~~~~vGr~~~~~~---l~~~L~~~----~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 246 (858)
.-+++||.++...+ |++.|.++ +-.++-|..+|++|.|||-+|+++++ ..+..| +.+. ..
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalan--e~kvp~-----l~vk----at-- 185 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALAN--EAKVPL-----LLVK----AT-- 185 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhc--ccCCce-----EEec----hH--
Confidence 34678998877654 56666654 34678999999999999999999998 333332 2221 11
Q ss_pred HHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh--------------hhHHHHHhhCCC--CCCC
Q 037627 247 LLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK--------------ETWESLKRAFPD--NKNG 310 (858)
Q Consensus 247 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--------------~~~~~l~~~l~~--~~~g 310 (858)
+++..--+ .....+.+...+.-+..++++.+|.++.. +....++..+.. ...|
T Consensus 186 --~liGehVG---------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneG 254 (368)
T COG1223 186 --ELIGEHVG---------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEG 254 (368)
T ss_pred --HHHHHHhh---------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCc
Confidence 11111100 01223333333444567999999998743 123334444432 3456
Q ss_pred cEEEEEeCchhHHhhcC-C-CCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCCh
Q 037627 311 SRVIITTRIKEVAERSD-E-NAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLP 376 (858)
Q Consensus 311 s~ilvTtR~~~~~~~~~-~-~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 376 (858)
...|-+|.+.......- . ....++..--+++|-.+++...+..-..+. +...+.++++++|.-
T Consensus 255 VvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv---~~~~~~~~~~t~g~S 319 (368)
T COG1223 255 VVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV---DADLRYLAAKTKGMS 319 (368)
T ss_pred eEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc---ccCHHHHHHHhCCCC
Confidence 65666666665443221 1 115567777778888888877764433221 122456667766653
No 194
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0055 Score=67.68 Aligned_cols=173 Identities=15% Similarity=0.137 Sum_probs=93.0
Q ss_pred ceeeccccHHHHHHHHhcC-----------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHH
Q 037627 177 NVVGFDDDVSKLLAKLLNK-----------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKD 245 (858)
Q Consensus 177 ~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 245 (858)
++=|-++-..+|.+.+..+ -...+-|..||++|+|||++|+.+++ .-+..| +++..+
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF-----lsvkgp----- 502 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF-----LSVKGP----- 502 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe-----eeccCH-----
Confidence 3334666666665554322 14567899999999999999999998 444444 344322
Q ss_pred HHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh-------------hHHHHHhhCCCCCCCcE
Q 037627 246 LLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE-------------TWESLKRAFPDNKNGSR 312 (858)
Q Consensus 246 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-------------~~~~l~~~l~~~~~gs~ 312 (858)
+++....+. +...+.+.+.+.=+..+.+|.||.++... .+.+++..+........
T Consensus 503 ---EL~sk~vGe---------SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~ 570 (693)
T KOG0730|consen 503 ---ELFSKYVGE---------SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKN 570 (693)
T ss_pred ---HHHHHhcCc---------hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCc
Confidence 122211111 22334444444434567999999987431 23445555553332222
Q ss_pred E--EE-EeCchhHHhhcCC---CCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCCh
Q 037627 313 V--II-TTRIKEVAERSDE---NAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLP 376 (858)
Q Consensus 313 i--lv-TtR~~~~~~~~~~---~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 376 (858)
| |- |-|...+....-. ....+.++.=+.+.-.++|+.++........ -...+|++++.|.-
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~---vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSED---VDLEELAQATEGYS 637 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHhccCC
Confidence 3 32 3343333332222 2245666666666667888877755443221 12355666666654
No 195
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.37 E-value=0.00028 Score=65.84 Aligned_cols=104 Identities=24% Similarity=0.300 Sum_probs=70.9
Q ss_pred CCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCC-CccccCCCCCCCee
Q 037627 703 KNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKED-PMPKLEKLPNLTIL 780 (858)
Q Consensus 703 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L 780 (858)
.+...++|++|.+. .++.|..++.|..|.+++| +..+.+.+..++++|..|.|.+|.|... ....+..+|.|++|
T Consensus 42 d~~d~iDLtdNdl~---~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR---KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchh---hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 34566777766554 3455666778888888875 6777777777788888888888887532 24456778888888
Q ss_pred EeeccccCCceE--EECCCCccccceeeecC
Q 037627 781 DLGLKSYGGKKM--ICTTKGFHLLEILQLID 809 (858)
Q Consensus 781 ~L~~n~~~~~~~--~~~~~~~~~L~~L~l~~ 809 (858)
.+-+|..+...- ......+|+|+.|++..
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 888887654321 11223578888888775
No 196
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.37 E-value=0.02 Score=68.97 Aligned_cols=47 Identities=21% Similarity=0.290 Sum_probs=37.7
Q ss_pred CCceeeccccHHHHHHHHhcC-------CCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 175 EGNVVGFDDDVSKLLAKLLNK-------EPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...++|.+..++.+...+... +....++.++|+.|+|||++|+.+++
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 456899999999988887632 11224788999999999999999986
No 197
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0012 Score=73.53 Aligned_cols=161 Identities=16% Similarity=0.174 Sum_probs=95.0
Q ss_pred CCceeeccccHHHHHHHHhc----CCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHH
Q 037627 175 EGNVVGFDDDVSKLLAKLLN----KEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRI 250 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 250 (858)
+.+-+|-++-.++|+++|.- ..-..++++++|++|+|||+|++.+++ .....| +-++++.-.+-.++--.=
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHhcccc
Confidence 45678999999999999853 234568999999999999999999998 566555 234455444433221110
Q ss_pred HHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh------hHHHHHhhCCCC-------------CCCc
Q 037627 251 IRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE------TWESLKRAFPDN-------------KNGS 311 (858)
Q Consensus 251 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~------~~~~l~~~l~~~-------------~~gs 311 (858)
-..+| .-+..+++.+++. +.++-|++||.++... -...++.-|... -.=|
T Consensus 397 RTYIG----------amPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 397 RTYIG----------AMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred ccccc----------cCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchh
Confidence 00111 0123445555443 4567799999997531 122233222210 0113
Q ss_pred EE-EEEeCch-h-HHhhcCCCCceeecCCCChhHHHHHHHHHh
Q 037627 312 RV-IITTRIK-E-VAERSDENAYAHKLRFLRSDESWELFCEKA 351 (858)
Q Consensus 312 ~i-lvTtR~~-~-~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~ 351 (858)
.| .|||-|. + +....-..-.++++.+.+++|-.++-+++.
T Consensus 466 ~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred heEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 33 4455433 2 222222222789999999999988877665
No 198
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0017 Score=70.53 Aligned_cols=131 Identities=14% Similarity=0.173 Sum_probs=80.8
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNC 278 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 278 (858)
..=|.++|++|+|||-||+++++ ..+-+| +++-.+ +++...-+. +...+.+.+.+.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP--------ELlNkYVGE---------SErAVR~vFqRA 600 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP--------ELLNKYVGE---------SERAVRQVFQRA 600 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH--------HHHHHHhhh---------HHHHHHHHHHHh
Confidence 45688999999999999999999 555554 555433 222221111 123444445554
Q ss_pred hcCceEEEEEEcCCCh-------------hhHHHHHhhCCC--CCCCcEEEEEeCchhHHhh-cC-C--CCceeecCCCC
Q 037627 279 LQGKSYLVVVDDAWQK-------------ETWESLKRAFPD--NKNGSRVIITTRIKEVAER-SD-E--NAYAHKLRFLR 339 (858)
Q Consensus 279 l~~~~~LlvlDd~~~~-------------~~~~~l~~~l~~--~~~gs~ilvTtR~~~~~~~-~~-~--~~~~~~l~~L~ 339 (858)
-...+++|.||.++.. ....+++..+.. ...|.-||-+|..+++... +- . -...+-++.=+
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn 680 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPN 680 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCC
Confidence 4578999999999743 124455555553 3456667766655543322 11 1 11556677777
Q ss_pred hhHHHHHHHHHhcC
Q 037627 340 SDESWELFCEKAFR 353 (858)
Q Consensus 340 ~~e~~~l~~~~~~~ 353 (858)
.+|-.++++.....
T Consensus 681 ~~eR~~ILK~~tkn 694 (802)
T KOG0733|consen 681 AEERVAILKTITKN 694 (802)
T ss_pred HHHHHHHHHHHhcc
Confidence 88888888888764
No 199
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.35 E-value=0.0015 Score=77.00 Aligned_cols=161 Identities=12% Similarity=0.128 Sum_probs=91.2
Q ss_pred CCceeeccccHHHHHHHHhcC----CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHH
Q 037627 175 EGNVVGFDDDVSKLLAKLLNK----EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRI 250 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 250 (858)
+...+|.++-.++|++++... .....++.++|++|+||||+|+.++. .....|- -++++...+...+...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~~---~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKYV---RMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCEE---EEEcCCCCCHHHhccch
Confidence 456899999999999888631 23456899999999999999999997 3333332 23344333332221111
Q ss_pred HHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChhh------HHHHHhhCCCC---------------CC
Q 037627 251 IRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKET------WESLKRAFPDN---------------KN 309 (858)
Q Consensus 251 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~------~~~l~~~l~~~---------------~~ 309 (858)
....+ . ....+.+.+...- ...-+|+||+++.... ...+...+... -.
T Consensus 396 ~~~~g-~---------~~G~~~~~l~~~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls 464 (784)
T PRK10787 396 RTYIG-S---------MPGKLIQKMAKVG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLS 464 (784)
T ss_pred hccCC-C---------CCcHHHHHHHhcC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCC
Confidence 01111 0 1122333333322 2344789999974421 34444444321 12
Q ss_pred CcEEEEEeCchhHHhhcCCCCceeecCCCChhHHHHHHHHHh
Q 037627 310 GSRVIITTRIKEVAERSDENAYAHKLRFLRSDESWELFCEKA 351 (858)
Q Consensus 310 gs~ilvTtR~~~~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~ 351 (858)
+..+|.|+..-.+....-.....+.+.+++.+|-.++..++.
T Consensus 465 ~v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 465 DVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred ceEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 344455554433333222333678999999999988887765
No 200
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.34 E-value=0.00019 Score=50.34 Aligned_cols=37 Identities=32% Similarity=0.407 Sum_probs=33.6
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccC
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIP 606 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp 606 (858)
++|++++|. ++ .+|+.+++|++|++|++++|.|+.+|
T Consensus 4 ~~L~l~~N~-------i~--~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 4 EELDLSNNQ-------IT--DLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp SEEEETSSS--------S--SHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred eEEEccCCC-------Cc--ccCchHhCCCCCCEEEecCCCCCCCc
Confidence 789999999 88 89988999999999999999999875
No 201
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.34 E-value=0.003 Score=66.69 Aligned_cols=92 Identities=12% Similarity=0.194 Sum_probs=63.6
Q ss_pred CceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCc-hhHHhhcCCCCceeecCCCChhHHHHHHHHHhcCCCCC
Q 037627 281 GKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRI-KEVAERSDENAYAHKLRFLRSDESWELFCEKAFRKSNG 357 (858)
Q Consensus 281 ~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~-~~~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~ 357 (858)
++.-++|+|+++.. +....++..+....+++.+|++|.+ ..+..-+......+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 45668999999865 4678888888877777777666655 44443333344789999999999999887641 1
Q ss_pred ChhHHHHHHHHHHHcCCChHHHHHH
Q 037627 358 SEGLEKLGREMVEKCRGLPLAIVVL 382 (858)
Q Consensus 358 ~~~~~~~~~~I~~~~~G~Plai~~~ 382 (858)
.+ ...++..++|.|.....+
T Consensus 206 ~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred Ch-----HHHHHHHcCCCHHHHHHH
Confidence 11 233577889999754433
No 202
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.34 E-value=0.0026 Score=70.68 Aligned_cols=176 Identities=12% Similarity=0.089 Sum_probs=92.4
Q ss_pred CceeeccccHHHHHHHH---hc-----CCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHH
Q 037627 176 GNVVGFDDDVSKLLAKL---LN-----KEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLL 247 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L---~~-----~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 247 (858)
+++.|.+...+.+.+.. .. +-...+-|.++|++|+|||.+|+.+++ .....| +-++.+.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~--e~~~~~---~~l~~~~-------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAN--DWQLPL---LRLDVGK-------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEEhHH--------
Confidence 45667766665554421 11 113456799999999999999999998 333222 1222211
Q ss_pred HHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh----h----------hHHHHHhhCCCCCCCcEE
Q 037627 248 LRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK----E----------TWESLKRAFPDNKNGSRV 313 (858)
Q Consensus 248 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~----~----------~~~~l~~~l~~~~~gs~i 313 (858)
+.....+. +...+.+.+...-...+++|++|+++.. . ....+...+.....+.-|
T Consensus 295 --l~~~~vGe---------se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~v 363 (489)
T CHL00195 295 --LFGGIVGE---------SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFV 363 (489)
T ss_pred --hcccccCh---------HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEE
Confidence 11111000 1122233333223357899999999732 0 112233333333334445
Q ss_pred EEEeCchhH-Hhhc---CCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCCh
Q 037627 314 IITTRIKEV-AERS---DENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLP 376 (858)
Q Consensus 314 lvTtR~~~~-~~~~---~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 376 (858)
|.||..... .... +.....+.++.-+.++-.++|..+......... .......+++.+.|+-
T Consensus 364 IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~-~~~dl~~La~~T~GfS 429 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSW-KKYDIKKLSKLSNKFS 429 (489)
T ss_pred EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcc-cccCHHHHHhhcCCCC
Confidence 667755532 2111 122256788888889999999877654322100 0122456777776665
No 203
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.32 E-value=0.0018 Score=77.06 Aligned_cols=177 Identities=14% Similarity=0.136 Sum_probs=96.6
Q ss_pred CCceeeccccHHHHHHHHhcC-----------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCH
Q 037627 175 EGNVVGFDDDVSKLLAKLLNK-----------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDT 243 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 243 (858)
-+++.|.+..++++.+.+... -...+.+.++|++|+|||+||+.+++ .....| +.++..
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~--~~~~~~---i~i~~~----- 246 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN--EAGAYF---ISINGP----- 246 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH--HhCCeE---EEEecH-----
Confidence 345889999999988776421 12346789999999999999999997 333222 222221
Q ss_pred HHHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh-------------hhHHHHHhhCCCC-CC
Q 037627 244 KDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK-------------ETWESLKRAFPDN-KN 309 (858)
Q Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-------------~~~~~l~~~l~~~-~~ 309 (858)
++ ...... .....+...+.......+.+|++|+++.. .....+...+... ..
T Consensus 247 -~i----~~~~~g---------~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~ 312 (733)
T TIGR01243 247 -EI----MSKYYG---------ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGR 312 (733)
T ss_pred -HH----hccccc---------HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccC
Confidence 11 111000 01122333344444566789999998642 1123344444322 22
Q ss_pred CcEEEE-EeCchh-HHhhcC---CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHH
Q 037627 310 GSRVII-TTRIKE-VAERSD---ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLA 378 (858)
Q Consensus 310 gs~ilv-TtR~~~-~~~~~~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pla 378 (858)
+..++| ||.... +..... .....+.+...+.++-.+++.......... + ......+++.+.|.--+
T Consensus 313 ~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~-~--d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 313 GRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLA-E--DVDLDKLAEVTHGFVGA 383 (733)
T ss_pred CCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCc-c--ccCHHHHHHhCCCCCHH
Confidence 333444 444332 211111 112467788888888888887654332211 1 12356788888887543
No 204
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=2.5e-05 Score=76.65 Aligned_cols=62 Identities=23% Similarity=0.336 Sum_probs=25.7
Q ss_pred cCCccEEEEecccCCCC-CccccCCCCCCCeeEeeccccCCceEEECCCCccccceeeecCCC
Q 037627 750 LPNLECLSLKKSHLKED-PMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLN 811 (858)
Q Consensus 750 l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~ 811 (858)
+||+..+-+..|.+... .-.....+|.+-.|+|+.|++.+....-....||.|..|.+.+.+
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCc
Confidence 34555555555443211 112233344444555554444432222223344555555444433
No 205
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.29 E-value=0.0025 Score=68.44 Aligned_cols=145 Identities=17% Similarity=0.197 Sum_probs=85.0
Q ss_pred ceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccC-------------------CcceEEEEEe
Q 037627 177 NVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKN-------------------KFDRCAWVSV 237 (858)
Q Consensus 177 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~ 237 (858)
.++|-+....++..+..........+.++|++|+||||+|..+++...-.. ..+.+..++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 356777778888888775443344699999999999999999987411111 1123444444
Q ss_pred CCCCC---HHHHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh--hHHHHHhhCCCCCCCcE
Q 037627 238 SQDYD---TKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE--TWESLKRAFPDNKNGSR 312 (858)
Q Consensus 238 ~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~--~~~~l~~~l~~~~~gs~ 312 (858)
+.... ..+.++++.+...... ..++.-++++|+++... .-..+...+......+.
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~--------------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESP--------------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCC--------------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 33332 2222333332222111 02567799999998764 35566666666666778
Q ss_pred EEEEeCch-hHHhhcCCCCceeecCCCChh
Q 037627 313 VIITTRIK-EVAERSDENAYAHKLRFLRSD 341 (858)
Q Consensus 313 ilvTtR~~-~~~~~~~~~~~~~~l~~L~~~ 341 (858)
+|++|... .+..........+++.+.+..
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~~~~~ 171 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKPPSRL 171 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCCchHH
Confidence 88877644 343333333356777763333
No 206
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.29 E-value=0.015 Score=57.30 Aligned_cols=226 Identities=12% Similarity=0.152 Sum_probs=124.3
Q ss_pred eeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCcc----ccCCcceEEEEEeCCC----------C--
Q 037627 178 VVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNND----VKNKFDRCAWVSVSQD----------Y-- 241 (858)
Q Consensus 178 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~----~~~~f~~~~wv~~~~~----------~-- 241 (858)
+.++++.-+.+..... .+..+...++|+.|.||-|.+..+.++.- .+-+-+...|.+-+.. +
T Consensus 15 l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHl 92 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHL 92 (351)
T ss_pred cccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceE
Confidence 5666666666665544 23478999999999999998877765310 1111123334432221 1
Q ss_pred ---------CHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceE-EEEEEcCCCh--hhHHHHHhhCCCCCC
Q 037627 242 ---------DTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSY-LVVVDDAWQK--ETWESLKRAFPDNKN 309 (858)
Q Consensus 242 ---------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlvlDd~~~~--~~~~~l~~~l~~~~~ 309 (858)
..+.+..+++++.....+ .+ .-..+.| ++|+-.+++. +.-..+......-..
T Consensus 93 EitPSDaG~~DRvViQellKevAQt~q---ie-------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 93 EITPSDAGNYDRVVIQELLKEVAQTQQ---IE-------------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred EeChhhcCcccHHHHHHHHHHHHhhcc---hh-------------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 112233333333222111 00 0012344 6777777654 233344444333334
Q ss_pred CcEEEEEeCc-hhHHhhcCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhHhc-
Q 037627 310 GSRVIITTRI-KEVAERSDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVLGGLLS- 387 (858)
Q Consensus 310 gs~ilvTtR~-~~~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l~- 387 (858)
.+|+|+.-.+ ..+........-.+++...+++|....+++.+-..+..-| ++.+.+|+++++|+-.-.-.+....+
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~ 234 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRV 234 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 5677653221 1222222333357899999999999999998877665555 78899999999998643333322221
Q ss_pred ---------CC-ChHHHHHHHHHHHhhhhcC--ccchhhHHHhhhccC
Q 037627 388 ---------MK-KPQEWRRVRDHLWQHLKND--CIHISSLLNLSFRNL 423 (858)
Q Consensus 388 ---------~~-~~~~w~~~~~~l~~~~~~~--~~~i~~~l~~s~~~L 423 (858)
.. +..+|+-+..+.....-.. +..+.++-..-|+-|
T Consensus 235 ~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 235 NNEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred ccccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 11 3668998888877655332 244444444445444
No 207
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.27 E-value=0.0047 Score=73.93 Aligned_cols=134 Identities=14% Similarity=0.128 Sum_probs=73.4
Q ss_pred CCceeeccccHHHHHHHHhcC-------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHH
Q 037627 175 EGNVVGFDDDVSKLLAKLLNK-------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLL 247 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 247 (858)
...++|.+..++.+.+.+... .....++.++|++|+|||.||+.++.. .-......+-++.+..... .
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~-~-- 639 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA-H-- 639 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh-h--
Confidence 467999999999998888532 223457899999999999999998863 2111122233333221111 0
Q ss_pred HHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh--hhHHHHHhhCCCCC-----------CCcEEE
Q 037627 248 LRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK--ETWESLKRAFPDNK-----------NGSRVI 314 (858)
Q Consensus 248 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~-----------~gs~il 314 (858)
.+..-++.+.. -........+...+++ ...-+|+||+++.. +.++.|...+..+. .++-||
T Consensus 640 -~~~~l~g~~~g--yvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI 713 (852)
T TIGR03345 640 -TVSRLKGSPPG--YVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVIL 713 (852)
T ss_pred -hhccccCCCCC--cccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEE
Confidence 11111121111 0000011223333333 45569999999743 45556665554332 456677
Q ss_pred EEeCc
Q 037627 315 ITTRI 319 (858)
Q Consensus 315 vTtR~ 319 (858)
+||.-
T Consensus 714 ~TSNl 718 (852)
T TIGR03345 714 LTSNA 718 (852)
T ss_pred EeCCC
Confidence 78754
No 208
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0024 Score=70.72 Aligned_cols=104 Identities=16% Similarity=0.228 Sum_probs=66.2
Q ss_pred CCceeeccccHHHHHHHHhc----CCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHH
Q 037627 175 EGNVVGFDDDVSKLLAKLLN----KEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRI 250 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 250 (858)
+++-+|.++-.++|++++.- +..+.++++.+|++|+|||++|+.++. .....|- -++++.-.+..++--.=
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFf---RfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFF---RFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceE---EEeccccccHHhhcccc
Confidence 45678999999999999853 345678999999999999999999998 4544442 24555444433221110
Q ss_pred HHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh
Q 037627 251 IRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK 294 (858)
Q Consensus 251 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~ 294 (858)
-..++ .-...+++.+++. +..+-|+.+|.++..
T Consensus 485 RTYVG----------AMPGkiIq~LK~v-~t~NPliLiDEvDKl 517 (906)
T KOG2004|consen 485 RTYVG----------AMPGKIIQCLKKV-KTENPLILIDEVDKL 517 (906)
T ss_pred eeeec----------cCChHHHHHHHhh-CCCCceEEeehhhhh
Confidence 00000 1123455555543 345668899999743
No 209
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0052 Score=65.75 Aligned_cols=121 Identities=18% Similarity=0.256 Sum_probs=70.2
Q ss_pred Cceeeccc---cHHHHHHHHhcCC------C-CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHH
Q 037627 176 GNVVGFDD---DVSKLLAKLLNKE------P-RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKD 245 (858)
Q Consensus 176 ~~~vGr~~---~~~~l~~~L~~~~------~-~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 245 (858)
+++-|-|+ |+++|+++|.++. + =++=|.++|++|.|||-||++++-+ ..-.| |...+..|+
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE--A~VPF----F~~sGSEFd--- 374 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE--AGVPF----FYASGSEFD--- 374 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc--cCCCe----Eeccccchh---
Confidence 45667654 6778888887652 2 2457899999999999999999973 22222 222333322
Q ss_pred HHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh-------------hhHHHHHhhCCCCCC--C
Q 037627 246 LLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK-------------ETWESLKRAFPDNKN--G 310 (858)
Q Consensus 246 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-------------~~~~~l~~~l~~~~~--g 310 (858)
+++-- .....+.+.+...-+.-+++|.+|+++.. +.+.+++..+..+.+ |
T Consensus 375 ---Em~VG------------vGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeG 439 (752)
T KOG0734|consen 375 ---EMFVG------------VGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEG 439 (752)
T ss_pred ---hhhhc------------ccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCc
Confidence 11111 11233344444444567999999999753 234556666654443 4
Q ss_pred cEEEEEeCch
Q 037627 311 SRVIITTRIK 320 (858)
Q Consensus 311 s~ilvTtR~~ 320 (858)
.-||-+|..+
T Consensus 440 iIvigATNfp 449 (752)
T KOG0734|consen 440 IIVIGATNFP 449 (752)
T ss_pred eEEEeccCCh
Confidence 4333344434
No 210
>PRK08181 transposase; Validated
Probab=97.21 E-value=0.00083 Score=68.44 Aligned_cols=99 Identities=19% Similarity=0.180 Sum_probs=53.5
Q ss_pred EEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHHh
Q 037627 200 FVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCL 279 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 279 (858)
..+.|+|++|+|||.||..+++. .......++|+++ .+++..+..... ....+..... +
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~------~~L~~~l~~a~~---------~~~~~~~l~~----l 165 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT------TDLVQKLQVARR---------ELQLESAIAK----L 165 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH------HHHHHHHHHHHh---------CCcHHHHHHH----H
Confidence 46999999999999999999873 2222234566653 344444432211 0112222222 2
Q ss_pred cCceEEEEEEcCCCh---hhH-HHHHhhCCCCCCCcEEEEEeCch
Q 037627 280 QGKSYLVVVDDAWQK---ETW-ESLKRAFPDNKNGSRVIITTRIK 320 (858)
Q Consensus 280 ~~~~~LlvlDd~~~~---~~~-~~l~~~l~~~~~gs~ilvTtR~~ 320 (858)
.+.=||||||+... +.+ ..+...+.....+..+||||..+
T Consensus 166 -~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 166 -DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred -hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 23459999999643 122 22333333211123488888754
No 211
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.20 E-value=0.015 Score=70.17 Aligned_cols=134 Identities=17% Similarity=0.206 Sum_probs=74.3
Q ss_pred CCceeeccccHHHHHHHHhcC-------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHH
Q 037627 175 EGNVVGFDDDVSKLLAKLLNK-------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLL 247 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 247 (858)
...++|.+..++.+...+... .....++.++|++|+|||++|+.++.. ....-...+.++.+..... ...
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~-~~~ 640 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEK-HSV 640 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhccc-chH
Confidence 356899999999999988642 112457889999999999999999973 2222223444454432221 111
Q ss_pred HHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh--hhHHHHHhhCCCC-----------CCCcEEE
Q 037627 248 LRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK--ETWESLKRAFPDN-----------KNGSRVI 314 (858)
Q Consensus 248 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~-----------~~gs~il 314 (858)
..+ ++.+.. -........+...++. ....+|+||+++.. +.+..|...+..+ ..++-||
T Consensus 641 ~~l---~g~~~g--~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI 712 (852)
T TIGR03346 641 ARL---IGAPPG--YVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVII 712 (852)
T ss_pred HHh---cCCCCC--ccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEE
Confidence 111 121110 0000011122233322 23349999999854 4566666665432 1344477
Q ss_pred EEeCc
Q 037627 315 ITTRI 319 (858)
Q Consensus 315 vTtR~ 319 (858)
+||.-
T Consensus 713 ~TSn~ 717 (852)
T TIGR03346 713 MTSNL 717 (852)
T ss_pred EeCCc
Confidence 77765
No 212
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.20 E-value=0.0018 Score=64.13 Aligned_cols=36 Identities=33% Similarity=0.544 Sum_probs=29.8
Q ss_pred EEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEe
Q 037627 200 FVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSV 237 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 237 (858)
-.++|.|..|+|||||+..+.. .....|+.+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 4688999999999999999997 57778877776644
No 213
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.18 E-value=0.00063 Score=65.70 Aligned_cols=53 Identities=25% Similarity=0.229 Sum_probs=36.6
Q ss_pred eccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEE
Q 037627 180 GFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVS 236 (858)
Q Consensus 180 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~ 236 (858)
.+..+-+..++.|.. ..++.+.|++|.|||.||.+.+-+.-..+.|+.++++.
T Consensus 4 p~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 4 PKNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp --SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 345566667777763 34999999999999999999987655557888887774
No 214
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.17 E-value=0.002 Score=73.09 Aligned_cols=44 Identities=27% Similarity=0.480 Sum_probs=36.6
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
++++|.+..++.+...+.... ...+.|+|++|+|||++|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~--~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPN--PQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 468999999999988775543 45678999999999999999975
No 215
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.17 E-value=0.0018 Score=65.15 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=39.1
Q ss_pred HHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHH
Q 037627 188 LLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKD 245 (858)
Q Consensus 188 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 245 (858)
+-+.|.++=+...++.|+|.+|+|||++|.+++.. ....-..++|++.. .++.+.
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPER 66 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHH
Confidence 33344344355789999999999999999999873 32334578999887 555443
No 216
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.017 Score=66.45 Aligned_cols=120 Identities=18% Similarity=0.214 Sum_probs=68.2
Q ss_pred CCceeeccccHHHHHHHHhcC-------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHH
Q 037627 175 EGNVVGFDDDVSKLLAKLLNK-------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLL 247 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 247 (858)
...++|-+..+..+.+.+... .....+....|+.|+|||-||++++.. .-+.=+..+-++.|.. --+..
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~DMSEy-~EkHs- 565 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRIDMSEY-MEKHS- 565 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceeechHHH-HHHHH-
Confidence 356899999999998888532 234568888999999999999999872 1111123333333321 11111
Q ss_pred HHHHHhccccccchhhhhccHHHHHHHHHHHhcCceE-EEEEEcCCC--hhhHHHHHhhCCC
Q 037627 248 LRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSY-LVVVDDAWQ--KETWESLKRAFPD 306 (858)
Q Consensus 248 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlvlDd~~~--~~~~~~l~~~l~~ 306 (858)
+-+-+|.+..- .....-..+. +..+.++| +|.||+++. ++.++-|.+-+.+
T Consensus 566 --VSrLIGaPPGY--VGyeeGG~LT----EaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 566 --VSRLIGAPPGY--VGYEEGGQLT----EAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred --HHHHhCCCCCC--ceeccccchh----HhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 11222222110 0000112222 33456777 888999984 4566677776654
No 217
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.15 E-value=0.016 Score=64.61 Aligned_cols=205 Identities=12% Similarity=0.079 Sum_probs=118.6
Q ss_pred cCCceeeccccHHHHHHHHhcC---CCCcEEEEEEecCcchHHHHHHHHhcCcc------ccCCcceEEEEEeCCCCCHH
Q 037627 174 IEGNVVGFDDDVSKLLAKLLNK---EPRRFVISVYGMGGLGKTTLARKLYHNND------VKNKFDRCAWVSVSQDYDTK 244 (858)
Q Consensus 174 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~~GiGKTtLa~~~~~~~~------~~~~f~~~~wv~~~~~~~~~ 244 (858)
.+..+-+|+.|..+|-..+... ++..+.+-|.|.+|.|||..+..|..... .-..|+ .+.|+.-.-..+.
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~ 472 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPR 472 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHH
Confidence 4566789999999998887543 34556999999999999999999987321 112332 3445555556789
Q ss_pred HHHHHHHHhccccccchhhhhccHHHHHHHHHHH-hcCceEEEEEEcCCChhh--HHHHHhhCCC-CCCCcEEEEEeCch
Q 037627 245 DLLLRIIRSFKINVLTRELEEMREEDLERYLHNC-LQGKSYLVVVDDAWQKET--WESLKRAFPD-NKNGSRVIITTRIK 320 (858)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDd~~~~~~--~~~l~~~l~~-~~~gs~ilvTtR~~ 320 (858)
++...|...+.+..... ....+.+...+... -..+..++++|+++..-. -+-+-..+.| ..++|+++|-+=..
T Consensus 473 ~~Y~~I~~~lsg~~~~~---~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 473 EIYEKIWEALSGERVTW---DAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHHHhcccCcccH---HHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 99999999998765421 11222332222210 124578999999875421 1223333443 34677776644211
Q ss_pred --hHH-hhcC------CCCceeecCCCChhHHHHHHHHHhcCCCCC-ChhHHHHHHHHHHHcCCChHHHHHH
Q 037627 321 --EVA-ERSD------ENAYAHKLRFLRSDESWELFCEKAFRKSNG-SEGLEKLGREMVEKCRGLPLAIVVL 382 (858)
Q Consensus 321 --~~~-~~~~------~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~-~~~~~~~~~~I~~~~~G~Plai~~~ 382 (858)
+.. ..+. .+...+...|.+.++-.+++..+..+...- ....+=+++.|+.-.|-.-.|+.+.
T Consensus 550 TmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred cccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHH
Confidence 111 1110 111467788888888888877766544221 2222333444444444444444444
No 218
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.15 E-value=0.0021 Score=67.57 Aligned_cols=106 Identities=13% Similarity=0.098 Sum_probs=64.0
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccC-Ccce-EEEEEeCC-CCCHHHHHHHHHHhcccccc-c
Q 037627 185 VSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKN-KFDR-CAWVSVSQ-DYDTKDLLLRIIRSFKINVL-T 260 (858)
Q Consensus 185 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~-~f~~-~~wv~~~~-~~~~~~~~~~i~~~l~~~~~-~ 260 (858)
..++++.+.-- +....+.|+|.+|+|||||++.+++. +.. +-+. ++|+.+.+ .....++++.+...+..... .
T Consensus 120 ~~RvID~l~Pi-GkGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 120 SMRVVDLVAPI-GKGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred hHhhhhheeec-CCCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCC
Confidence 34566666532 23456799999999999999998873 322 2233 46766654 45778888888877665432 1
Q ss_pred hhhhhccHHHHHHHHHHHh--cCceEEEEEEcCCC
Q 037627 261 RELEEMREEDLERYLHNCL--QGKSYLVVVDDAWQ 293 (858)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDd~~~ 293 (858)
........-.....+.+++ .+++++||+|++..
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 1111111111222222222 58899999999854
No 219
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0064 Score=69.30 Aligned_cols=177 Identities=15% Similarity=0.161 Sum_probs=102.6
Q ss_pred Cceeeccc---cHHHHHHHHhcCC-------CCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHH
Q 037627 176 GNVVGFDD---DVSKLLAKLLNKE-------PRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKD 245 (858)
Q Consensus 176 ~~~vGr~~---~~~~l~~~L~~~~-------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 245 (858)
.++.|-++ |++++++.|.++. .-++=+.++|++|+|||-||++++-. . .+-|++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGE--A-----gVPF~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGE--A-----GVPFFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcc--c-----CCceeeechH-----
Confidence 46778665 4555566665541 23567899999999999999999973 2 2445565532
Q ss_pred HHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh-----------------hhHHHHHhhCCCCC
Q 037627 246 LLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK-----------------ETWESLKRAFPDNK 308 (858)
Q Consensus 246 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-----------------~~~~~l~~~l~~~~ 308 (858)
+..+.+.... ...+.+.+...-...+..|.+|+++.. ..+.+++..+....
T Consensus 379 ---EFvE~~~g~~---------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 379 ---EFVEMFVGVG---------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred ---HHHHHhcccc---------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 1222222111 112222333333466889999988632 13455555555433
Q ss_pred CCcEE--EEEeCchhHHhhc----CCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHH
Q 037627 309 NGSRV--IITTRIKEVAERS----DENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLA 378 (858)
Q Consensus 309 ~gs~i--lvTtR~~~~~~~~----~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pla 378 (858)
.+..| +-+|...++.... +.....+.++.=+...-.++|.-++...... .+..+..+ |+..+.|.+=|
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHH
Confidence 33323 3355544433221 1112567777778888888998888665543 23345555 99999988854
No 220
>PRK06526 transposase; Provisional
Probab=97.14 E-value=0.00056 Score=69.35 Aligned_cols=24 Identities=33% Similarity=0.275 Sum_probs=21.1
Q ss_pred cEEEEEEecCcchHHHHHHHHhcC
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
...+.|+|++|+|||+||..++..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHH
Confidence 456899999999999999999873
No 221
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.13 E-value=0.0024 Score=67.31 Aligned_cols=88 Identities=14% Similarity=0.163 Sum_probs=52.7
Q ss_pred CceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCchh-HHhhcCCCCceeecCCCChhHHHHHHHHHhcCCCCC
Q 037627 281 GKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRIKE-VAERSDENAYAHKLRFLRSDESWELFCEKAFRKSNG 357 (858)
Q Consensus 281 ~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~-~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~ 357 (858)
+++-++|+|+++.. +....+...+.....+..+|++|.+.. +..........+.+.+++.+++.+.+.+.. .
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~- 186 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----V- 186 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----C-
Confidence 44456667888754 344555555544344566777776653 443333334788999999999998886541 1
Q ss_pred ChhHHHHHHHHHHHcCCChHH
Q 037627 358 SEGLEKLGREMVEKCRGLPLA 378 (858)
Q Consensus 358 ~~~~~~~~~~I~~~~~G~Pla 378 (858)
.. .. . .+..++|.|+.
T Consensus 187 ~~--~~--~-~l~~~~g~p~~ 202 (325)
T PRK08699 187 AE--PE--E-RLAFHSGAPLF 202 (325)
T ss_pred Cc--HH--H-HHHHhCCChhh
Confidence 11 11 1 23568899954
No 222
>PRK04132 replication factor C small subunit; Provisional
Probab=97.13 E-value=0.01 Score=69.65 Aligned_cols=155 Identities=14% Similarity=0.098 Sum_probs=96.6
Q ss_pred EEe--cCcchHHHHHHHHhcCccccCCc-ceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHHhc
Q 037627 204 VYG--MGGLGKTTLARKLYHNNDVKNKF-DRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQ 280 (858)
Q Consensus 204 I~G--~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 280 (858)
+.| |.++||||+|..++++. ....+ ..++-++++..... +.+++++.......+ .-.
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgi-d~IR~iIk~~a~~~~------------------~~~ 628 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALAREL-FGENWRHNFLELNASDERGI-NVIREKVKEFARTKP------------------IGG 628 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccH-HHHHHHHHHHHhcCC------------------cCC
Confidence 346 78899999999999841 12222 23566666654333 234444333221100 001
Q ss_pred CceEEEEEEcCCChh--hHHHHHhhCCCCCCCcEEEEEeCch-hHHhhcCCCCceeecCCCChhHHHHHHHHHhcCCCCC
Q 037627 281 GKSYLVVVDDAWQKE--TWESLKRAFPDNKNGSRVIITTRIK-EVAERSDENAYAHKLRFLRSDESWELFCEKAFRKSNG 357 (858)
Q Consensus 281 ~~~~LlvlDd~~~~~--~~~~l~~~l~~~~~gs~ilvTtR~~-~~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~ 357 (858)
.+.-++|+|+++... ....+...+......+++|+++.+. .+..........+.+.+++.++....+...+...+..
T Consensus 629 ~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~ 708 (846)
T PRK04132 629 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE 708 (846)
T ss_pred CCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC
Confidence 245799999999764 5667777776555566776666554 3433334444789999999999998888776543322
Q ss_pred ChhHHHHHHHHHHHcCCChHHHH
Q 037627 358 SEGLEKLGREMVEKCRGLPLAIV 380 (858)
Q Consensus 358 ~~~~~~~~~~I~~~~~G~Plai~ 380 (858)
.+ ++....|++.++|.+..+-
T Consensus 709 i~--~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 709 LT--EEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred CC--HHHHHHHHHHcCCCHHHHH
Confidence 12 4577899999999985443
No 223
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.11 E-value=0.0017 Score=64.48 Aligned_cols=53 Identities=19% Similarity=0.269 Sum_probs=38.7
Q ss_pred HhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHH
Q 037627 192 LLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLL 247 (858)
Q Consensus 192 L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 247 (858)
|.++=+...++.|+|++|+|||+++.+++.. ....-..++|++... +++..+.
T Consensus 5 l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~ 57 (209)
T TIGR02237 5 LGGGVERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFK 57 (209)
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHH
Confidence 3333356789999999999999999999873 333346799999876 5554443
No 224
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.09 E-value=0.0087 Score=62.33 Aligned_cols=25 Identities=16% Similarity=0.438 Sum_probs=23.0
Q ss_pred CCcEEEEEEecCcchHHHHHHHHhc
Q 037627 197 PRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 197 ~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..++.++|+|++|+|||.+|+.++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~ 170 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFK 170 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 3568999999999999999999998
No 225
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.09 E-value=0.0024 Score=60.57 Aligned_cols=40 Identities=35% Similarity=0.549 Sum_probs=29.8
Q ss_pred EEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCC
Q 037627 201 VISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYD 242 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 242 (858)
++.|+|++|+||||++..++.. ....-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 4689999999999999999873 333335678888765543
No 226
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.08 E-value=6.1e-05 Score=73.07 Aligned_cols=234 Identities=21% Similarity=0.174 Sum_probs=110.6
Q ss_pred eeeeccCCccccccccCCCC---CccccccCCcccceEeccCCccc----ccC-------cccccCCCCcEEeccccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCY---NLPEEMVKLVNLKYLRLTNAHID----VIP-------SCIAKLQRLQTLDISGNMAF 626 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~---~lp~~~~~l~~L~~L~L~~n~i~----~lp-------~~l~~l~~L~~L~L~~n~~~ 626 (858)
..++||||. ++.. .+...+.+-.+|+..+++.-..+ .+| +.+-++++|+..+||.|.+.
T Consensus 33 ~evdLSGNt-------igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 33 VEVDLSGNT-------IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred eEEeccCCc-------ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 567788877 4311 23344555667777777653221 223 33556778888888888665
Q ss_pred cccchhhh----ccccccccc--cccccccCCCCC-ccccccceeecccccccCcccccCCCeeEEeecccccc---cch
Q 037627 627 MELPREIC----ELKELRHLI--GNFTGTLNIENL-SNLQTLKYVERGSWAEINPEKLVNLRDLRIISKYQEEE---FSF 696 (858)
Q Consensus 627 ~~lp~~~~----~l~~L~~L~--~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~ 696 (858)
...|+.++ +-+.|.||. |+-.+|..=+.+ +.|++| ..|.. ...-+.|+......|..... ..-
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~l--a~nKK-----aa~kp~Le~vicgrNRlengs~~~~a 178 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHL--AYNKK-----AADKPKLEVVICGRNRLENGSKELSA 178 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHH--HHHhh-----hccCCCceEEEeccchhccCcHHHHH
Confidence 55555433 334455542 111122110000 011111 01100 11223333333333331110 110
Q ss_pred hhhhcCCCCCeEEeeccCCcccc----CCCCCCCCCCccEEEecccCCC------CChhhhhccCCccEEEEecccCCCC
Q 037627 697 KSIAYLKNLQLLSIRLSDDTCFD----SLQPLSDCSYLIDLRLSGKIEK------LPEDLHEVLPNLECLSLKKSHLKED 766 (858)
Q Consensus 697 ~~l~~l~~L~~L~l~~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~------~p~~~~~~l~~L~~L~L~~n~l~~~ 766 (858)
..+....+|+.+.+..|++..-+ .+..+..+.+|+.|+|..|.-+ +...+.. .+.|+.|.+.+|-++..
T Consensus 179 ~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~-W~~lrEL~lnDClls~~ 257 (388)
T COG5238 179 ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCE-WNLLRELRLNDCLLSNE 257 (388)
T ss_pred HHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcc-cchhhhccccchhhccc
Confidence 22333456666666666543211 1112334566777777665211 1111222 35678888888877654
Q ss_pred Ccccc----C--CCCCCCeeEeeccccCCceEEE------CCCCccccceeeecC
Q 037627 767 PMPKL----E--KLPNLTILDLGLKSYGGKKMIC------TTKGFHLLEILQLID 809 (858)
Q Consensus 767 ~~~~l----~--~l~~L~~L~L~~n~~~~~~~~~------~~~~~~~L~~L~l~~ 809 (858)
...++ . ..|+|..|...+|...+..+.. ..+.+|-|..|.+.+
T Consensus 258 G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng 312 (388)
T COG5238 258 GVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG 312 (388)
T ss_pred cHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc
Confidence 33222 1 3677888888777765543322 224566677666665
No 227
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.07 E-value=0.031 Score=59.82 Aligned_cols=41 Identities=27% Similarity=0.387 Sum_probs=32.7
Q ss_pred cccHHHHHHHHhcCC-CCcEEEEEEecCcchHHHHHHHHhcC
Q 037627 182 DDDVSKLLAKLLNKE-PRRFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 182 ~~~~~~l~~~L~~~~-~~~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
+.-.+.+.+.+...+ ....+|+|.|.=|+||||+.+.+.+.
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344566777777653 56889999999999999999999874
No 228
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.05 E-value=0.00057 Score=62.63 Aligned_cols=44 Identities=27% Similarity=0.297 Sum_probs=33.0
Q ss_pred eeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcC
Q 037627 179 VGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 179 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
||+...++++.+.+..-......|.|+|..|+||+++|+.++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 57777788887777654444567899999999999999998873
No 229
>PRK04296 thymidine kinase; Provisional
Probab=97.05 E-value=0.0011 Score=64.32 Aligned_cols=113 Identities=14% Similarity=0.069 Sum_probs=63.2
Q ss_pred EEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHHh
Q 037627 200 FVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCL 279 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 279 (858)
.++.|+|+.|.||||+|..++. +...+...++.+. ..++.......++..++..... ......+++...+.+ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~--~~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREA--IPVSSDTDIFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe--ccccccccCCcEecCCCCcccc--eEeCChHHHHHHHHh-h
Confidence 5788999999999999999987 3333333344442 1112222233455555432211 011223444445444 3
Q ss_pred cCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCchh
Q 037627 280 QGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRIKE 321 (858)
Q Consensus 280 ~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~ 321 (858)
.++.-+||+|.+.-. ++..++...+. ..|..||+|.++..
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 345569999999643 33444444332 34678999998744
No 230
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.04 E-value=0.014 Score=59.23 Aligned_cols=175 Identities=17% Similarity=0.123 Sum_probs=99.1
Q ss_pred CCceeeccccHHHHHHHHhcC--CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCH-HHHHHHHH
Q 037627 175 EGNVVGFDDDVSKLLAKLLNK--EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDT-KDLLLRII 251 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i~ 251 (858)
...++|-.++..++-+++... .+...-|.|+|+.|.|||+|......+ .+..-+..+-|.+...... +-+++.|.
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~--~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD--IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh--HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 346889999999888888643 344567899999999999999888874 2222234455566554433 33455666
Q ss_pred HhccccccchhhhhccHHHHHHHHHHHhc------CceEEEEEEcCCChh-hHH-HHH-hhC----CCCCCCcEEEEEeC
Q 037627 252 RSFKINVLTRELEEMREEDLERYLHNCLQ------GKSYLVVVDDAWQKE-TWE-SLK-RAF----PDNKNGSRVIITTR 318 (858)
Q Consensus 252 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~------~~~~LlvlDd~~~~~-~~~-~l~-~~l----~~~~~gs~ilvTtR 318 (858)
+++............+..+....+...|+ +.++++|+|+++--. .-. .+. ..+ ....+-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 65554322111112222233333444443 236889999886431 111 111 111 12345566778999
Q ss_pred chhHHh---hcC--CCC-ceeecCCCChhHHHHHHHHHh
Q 037627 319 IKEVAE---RSD--ENA-YAHKLRFLRSDESWELFCEKA 351 (858)
Q Consensus 319 ~~~~~~---~~~--~~~-~~~~l~~L~~~e~~~l~~~~~ 351 (858)
-..... ... -.. .++-++.++-++...++++..
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 763221 111 111 345567777888888887765
No 231
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.03 E-value=0.00011 Score=85.08 Aligned_cols=129 Identities=25% Similarity=0.286 Sum_probs=74.4
Q ss_pred ccccccceeecccc----cccCcccccCCCeeEEeecccc-cccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCc
Q 037627 656 SNLQTLKYVERGSW----AEINPEKLVNLRDLRIISKYQE-EEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYL 730 (858)
Q Consensus 656 ~~L~~L~l~~~~~~----~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L 730 (858)
.+|+.|++.+.... ....-..||.|++|.+.+-... ..+. ....++++|..||+++++.. .+..++.+++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~-~lc~sFpNL~sLDIS~TnI~---nl~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFS-QLCASFPNLRSLDISGTNIS---NLSGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHH-HHhhccCccceeecCCCCcc---CcHHHhccccH
Confidence 45666666665422 1122235677777777765532 2233 45567778888888776554 33556677777
Q ss_pred cEEEecc-cCCCC--ChhhhhccCCccEEEEecccCCCCC------ccccCCCCCCCeeEeeccccCC
Q 037627 731 IDLRLSG-KIEKL--PEDLHEVLPNLECLSLKKSHLKEDP------MPKLEKLPNLTILDLGLKSYGG 789 (858)
Q Consensus 731 ~~L~l~~-~~~~~--p~~~~~~l~~L~~L~L~~n~l~~~~------~~~l~~l~~L~~L~L~~n~~~~ 789 (858)
+.|.+.+ .+... -..++. +++|+.||+|........ ...-..||+|+.||.|++.+..
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHHhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 7777766 33321 224455 577777777776543221 1122347777888777665543
No 232
>PRK12377 putative replication protein; Provisional
Probab=97.03 E-value=0.0016 Score=65.53 Aligned_cols=38 Identities=24% Similarity=0.163 Sum_probs=28.6
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeC
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVS 238 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 238 (858)
...+.|+|.+|+|||+||..+++. .......++++++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~ 138 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP 138 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH
Confidence 457999999999999999999984 33333346676653
No 233
>PHA00729 NTP-binding motif containing protein
Probab=97.03 E-value=0.0041 Score=60.88 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=25.0
Q ss_pred HHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 188 LLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 188 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
+++.+... ....++|+|.+|+||||||..+++
T Consensus 8 ~~~~l~~~--~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 8 IVSAYNNN--GFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHHHhcC--CeEEEEEECCCCCCHHHHHHHHHH
Confidence 44444433 345799999999999999999987
No 234
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.98 E-value=0.00088 Score=62.60 Aligned_cols=81 Identities=20% Similarity=0.215 Sum_probs=48.2
Q ss_pred ccccccceeecccccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEe
Q 037627 656 SNLQTLKYVERGSWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRL 735 (858)
Q Consensus 656 ~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 735 (858)
.+...+++.+|.......+..++.|..|.+.+|.+...-+ .--..+++|..|.+.+|++..++.+..+..||.|++|.+
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeecc-chhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 3455566666666666556666667777776666555554 444455667777777666655555555555555555544
Q ss_pred cc
Q 037627 736 SG 737 (858)
Q Consensus 736 ~~ 737 (858)
-+
T Consensus 121 l~ 122 (233)
T KOG1644|consen 121 LG 122 (233)
T ss_pred cC
Confidence 44
No 235
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.98 E-value=0.0021 Score=62.48 Aligned_cols=92 Identities=23% Similarity=0.174 Sum_probs=52.9
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCC-CCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQD-YDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHN 277 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 277 (858)
++++.++|+.|+||||.+.+++.....+ -..+..++.... ....+.++..++.++.+...........+...+.+..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 4689999999999999988888743333 345777776543 3456677778888876632111111112223333333
Q ss_pred HhcCceEEEEEEcCC
Q 037627 278 CLQGKSYLVVVDDAW 292 (858)
Q Consensus 278 ~l~~~~~LlvlDd~~ 292 (858)
.-..+-=+|++|=.-
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 322233477788763
No 236
>PRK09183 transposase/IS protein; Provisional
Probab=96.96 E-value=0.0019 Score=65.95 Aligned_cols=23 Identities=39% Similarity=0.369 Sum_probs=20.5
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+.|+|++|+|||+||..++.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 34788999999999999999976
No 237
>PRK08118 topology modulation protein; Reviewed
Probab=96.96 E-value=0.00035 Score=66.19 Aligned_cols=34 Identities=38% Similarity=0.642 Sum_probs=26.6
Q ss_pred EEEEEecCcchHHHHHHHHhcCcccc-CCcceEEE
Q 037627 201 VISVYGMGGLGKTTLARKLYHNNDVK-NKFDRCAW 234 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~w 234 (858)
.|.|+|++|+||||||+.+++..... .+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999853333 34566665
No 238
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0093 Score=63.85 Aligned_cols=149 Identities=17% Similarity=0.245 Sum_probs=84.9
Q ss_pred CCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHH
Q 037627 197 PRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLH 276 (858)
Q Consensus 197 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 276 (858)
.....+.+.|++|+|||+||.+++. ...|..+--++-..- ++.. +......+...+.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~m-------------iG~s------EsaKc~~i~k~F~ 592 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDM-------------IGLS------ESAKCAHIKKIFE 592 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHc-------------cCcc------HHHHHHHHHHHHH
Confidence 3466788999999999999999986 355654433322110 1111 1111223334444
Q ss_pred HHhcCceEEEEEEcCCChhhH------------HHHHhhCCCC-CCCcEE--EEEeCchhHHhhcCCC---CceeecCCC
Q 037627 277 NCLQGKSYLVVVDDAWQKETW------------ESLKRAFPDN-KNGSRV--IITTRIKEVAERSDEN---AYAHKLRFL 338 (858)
Q Consensus 277 ~~l~~~~~LlvlDd~~~~~~~------------~~l~~~l~~~-~~gs~i--lvTtR~~~~~~~~~~~---~~~~~l~~L 338 (858)
..-+..--.||+||++..-+| +.+.-.+... +.|-|+ +-||....+...++.. ...+.++.+
T Consensus 593 DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 593 DAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNL 672 (744)
T ss_pred HhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCcc
Confidence 444566779999999765333 3444444432 234444 4466666777665532 267888888
Q ss_pred Ch-hHHHHHHHHHh-cCCCCCChhHHHHHHHHHHHc
Q 037627 339 RS-DESWELFCEKA-FRKSNGSEGLEKLGREMVEKC 372 (858)
Q Consensus 339 ~~-~e~~~l~~~~~-~~~~~~~~~~~~~~~~I~~~~ 372 (858)
+. ++..+.+...- +. +...+.++.+...+|
T Consensus 673 ~~~~~~~~vl~~~n~fs----d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 673 TTGEQLLEVLEELNIFS----DDEVRAIAEQLLSKK 704 (744)
T ss_pred CchHHHHHHHHHccCCC----cchhHHHHHHHhccc
Confidence 87 67777766542 11 223344445555544
No 239
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.95 E-value=0.012 Score=62.48 Aligned_cols=46 Identities=22% Similarity=0.327 Sum_probs=38.9
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..++|+...++++.+.+........-|.|+|..|+||+++|+.+..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999888876544456799999999999999999975
No 240
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.94 E-value=0.00024 Score=82.19 Aligned_cols=132 Identities=23% Similarity=0.206 Sum_probs=85.9
Q ss_pred cccCCCeeEEeecccccccchhhh-hcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEecc-cCCCCChhhhhccCCc
Q 037627 676 KLVNLRDLRIISKYQEEEFSFKSI-AYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSG-KIEKLPEDLHEVLPNL 753 (858)
Q Consensus 676 ~l~~L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~p~~~~~~l~~L 753 (858)
.-.+|++|++.+......-.+..+ ..+|.|++|.+++-............++|+|..||+|+ |+..+ .++.. +++|
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~-LknL 197 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISR-LKNL 197 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhc-cccH
Confidence 446788888887653222111333 35789999998764333221123356788999999999 66666 56666 7999
Q ss_pred cEEEEecccCCC-CCccccCCCCCCCeeEeeccccCCce-E----EECCCCccccceeeecC
Q 037627 754 ECLSLKKSHLKE-DPMPKLEKLPNLTILDLGLKSYGGKK-M----ICTTKGFHLLEILQLID 809 (858)
Q Consensus 754 ~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~-~----~~~~~~~~~L~~L~l~~ 809 (858)
+.|.+.+=.+.. .....+.+|++|+.||+|........ + .-....+|+|+.|+.++
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 999998877653 44556778999999999976544321 0 01123477888887775
No 241
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.92 E-value=0.022 Score=65.40 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=40.9
Q ss_pred cCCceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcC
Q 037627 174 IEGNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 174 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
....++|....++++.+.+.........|.|+|..|+|||++|+.+.+.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 3467999999999999888655444567889999999999999999873
No 242
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.91 E-value=0.019 Score=60.95 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=35.5
Q ss_pred eeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 178 VVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 178 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
+||+...++++.+.+..-.....-|.|+|..|+||+++|+.+..
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~ 44 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHY 44 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHH
Confidence 46777778888777765544456789999999999999999976
No 243
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.90 E-value=0.0056 Score=61.64 Aligned_cols=55 Identities=18% Similarity=0.250 Sum_probs=38.9
Q ss_pred HHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCc------ceEEEEEeCCCCCHHHH
Q 037627 190 AKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKF------DRCAWVSVSQDYDTKDL 246 (858)
Q Consensus 190 ~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f------~~~~wv~~~~~~~~~~~ 246 (858)
+.|.++=+...++.|+|++|+|||+||.+++.. ..... ..++|++....++...+
T Consensus 10 ~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl 70 (226)
T cd01393 10 ELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERL 70 (226)
T ss_pred HHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHH
Confidence 334344345679999999999999999999863 22222 56889998777665443
No 244
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.85 E-value=0.0046 Score=61.83 Aligned_cols=53 Identities=26% Similarity=0.248 Sum_probs=36.8
Q ss_pred HHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCC
Q 037627 188 LLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYD 242 (858)
Q Consensus 188 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 242 (858)
+-+.|..+=+...++.|+|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 33444334355789999999999999999999873 322334678887655543
No 245
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.84 E-value=0.00016 Score=62.86 Aligned_cols=56 Identities=23% Similarity=0.432 Sum_probs=31.4
Q ss_pred ccCCcccceEeccCCcccccCcccc-cCCCCcEEeccccccccccchhhhcccccccc
Q 037627 586 MVKLVNLKYLRLTNAHIDVIPSCIA-KLQRLQTLDISGNMAFMELPREICELKELRHL 642 (858)
Q Consensus 586 ~~~l~~L~~L~L~~n~i~~lp~~l~-~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L 642 (858)
+....+|...+|++|.++.+|+.|. +++.+++|++++| .+..+|.++..++.|+.|
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSL 105 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhc
Confidence 3344555556666666666665553 3345666666666 555556555555555554
No 246
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.84 E-value=0.0061 Score=61.81 Aligned_cols=61 Identities=16% Similarity=0.258 Sum_probs=41.2
Q ss_pred HhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCC----cceEEEEEeCCCCCHHHHHHHHHHh
Q 037627 192 LLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNK----FDRCAWVSVSQDYDTKDLLLRIIRS 253 (858)
Q Consensus 192 L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~ 253 (858)
|.++=+...++.|+|++|+|||+||.+++........ -..++|++....++...+ .++++.
T Consensus 12 l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~ 76 (235)
T cd01123 12 LGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAER 76 (235)
T ss_pred ccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHH
Confidence 3333345689999999999999999999753222221 357999998877665443 334443
No 247
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.84 E-value=0.02 Score=67.72 Aligned_cols=62 Identities=16% Similarity=0.273 Sum_probs=44.8
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCC
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQ 239 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 239 (858)
..++|+...++++.+.+..-.....-|.|+|..|+|||++|+.+.+... ..-...+.+++..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~--r~~~~~v~i~c~~ 437 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG--RNNRRMVKMNCAA 437 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC--CCCCCeEEEeccc
Confidence 4699999999998877765444456899999999999999999987321 1112345555554
No 248
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.84 E-value=0.004 Score=62.51 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=27.4
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEe
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSV 237 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 237 (858)
...+.++|.+|+|||+||..+++. ....-..++++++
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it~ 135 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIITV 135 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEH
Confidence 457899999999999999999984 3222335666643
No 249
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.028 Score=54.24 Aligned_cols=153 Identities=16% Similarity=0.238 Sum_probs=85.6
Q ss_pred ceee-ccccHHHHHHHHhcC-----------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHH
Q 037627 177 NVVG-FDDDVSKLLAKLLNK-----------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTK 244 (858)
Q Consensus 177 ~~vG-r~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 244 (858)
.+|| -+..+++|.+.+.-+ -.+++-+.++|++|.|||-||+.+++ ...+.|+.++..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVah-------ht~c~firvsgs---- 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAH-------HTDCTFIRVSGS---- 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHh-------hcceEEEEechH----
Confidence 3565 466677666655322 13567889999999999999999997 344667777643
Q ss_pred HHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh-------------h---hHHHHHhhCCC--
Q 037627 245 DLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK-------------E---TWESLKRAFPD-- 306 (858)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-------------~---~~~~l~~~l~~-- 306 (858)
++....+. ... . -..++.-.-+ ...+-.|..|++++. + ..-+++..+..
T Consensus 216 elvqk~ig----egs-----r-mvrelfvmar---ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfe 282 (404)
T KOG0728|consen 216 ELVQKYIG----EGS-----R-MVRELFVMAR---EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFE 282 (404)
T ss_pred HHHHHHhh----hhH-----H-HHHHHHHHHH---hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccc
Confidence 22222211 100 0 0111111111 345788999998753 1 12234444443
Q ss_pred CCCCcEEEEEeCchhHHhhc--CC--CCceeecCCCChhHHHHHHHHHhcC
Q 037627 307 NKNGSRVIITTRIKEVAERS--DE--NAYAHKLRFLRSDESWELFCEKAFR 353 (858)
Q Consensus 307 ~~~gs~ilvTtR~~~~~~~~--~~--~~~~~~l~~L~~~e~~~l~~~~~~~ 353 (858)
..++.+||.+|..-++.... .+ -...++..+-+++.-.++++-+...
T Consensus 283 atknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrk 333 (404)
T KOG0728|consen 283 ATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRK 333 (404)
T ss_pred cccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhh
Confidence 34567888877655443221 11 1145677777777666777655443
No 250
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.81 E-value=0.0024 Score=71.00 Aligned_cols=76 Identities=18% Similarity=0.283 Sum_probs=53.8
Q ss_pred CCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHH
Q 037627 197 PRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLH 276 (858)
Q Consensus 197 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 276 (858)
+..++..++|++|.||||||.-+++. . .| .++=|+++...++..+-..|...+...... +
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkq---a-GY-sVvEINASDeRt~~~v~~kI~~avq~~s~l----~----------- 383 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQ---A-GY-SVVEINASDERTAPMVKEKIENAVQNHSVL----D----------- 383 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHh---c-Cc-eEEEecccccccHHHHHHHHHHHHhhcccc----c-----------
Confidence 45789999999999999999999962 2 22 377788888877766655555544332210 0
Q ss_pred HHhcCceEEEEEEcCCCh
Q 037627 277 NCLQGKSYLVVVDDAWQK 294 (858)
Q Consensus 277 ~~l~~~~~LlvlDd~~~~ 294 (858)
..+++..||+|+++-.
T Consensus 384 --adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 384 --ADSRPVCLVIDEIDGA 399 (877)
T ss_pred --cCCCcceEEEecccCC
Confidence 1267889999999854
No 251
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.81 E-value=0.0062 Score=73.27 Aligned_cols=134 Identities=15% Similarity=0.182 Sum_probs=72.8
Q ss_pred CCceeeccccHHHHHHHHhcC-------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHH
Q 037627 175 EGNVVGFDDDVSKLLAKLLNK-------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLL 247 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 247 (858)
...++|-+..++.+...+... ......+.++|+.|+|||+||+.+++. .-..-...+-++.+.-..... .
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~-~ 584 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHT-V 584 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhcccccc-H
Confidence 367899999999998887532 112346778999999999999999872 211112334444433221111 1
Q ss_pred HHHHHhccccccchhhhhccHHHHHHHHHHHhcCce-EEEEEEcCCCh--hhHHHHHhhCCCC-----------CCCcEE
Q 037627 248 LRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKS-YLVVVDDAWQK--ETWESLKRAFPDN-----------KNGSRV 313 (858)
Q Consensus 248 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~LlvlDd~~~~--~~~~~l~~~l~~~-----------~~gs~i 313 (858)
.. -++.+.. -........+. +.++.++ -+++||+++.. +.+..+...+..+ ..++.+
T Consensus 585 ~~---l~g~~~g--yvg~~~~~~l~----~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~ 655 (821)
T CHL00095 585 SK---LIGSPPG--YVGYNEGGQLT----EAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLI 655 (821)
T ss_pred HH---hcCCCCc--ccCcCccchHH----HHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEE
Confidence 11 1121110 00000111222 3333344 58999999854 4566666665532 235556
Q ss_pred EEEeCch
Q 037627 314 IITTRIK 320 (858)
Q Consensus 314 lvTtR~~ 320 (858)
|+||...
T Consensus 656 I~Tsn~g 662 (821)
T CHL00095 656 IMTSNLG 662 (821)
T ss_pred EEeCCcc
Confidence 7777643
No 252
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.81 E-value=0.003 Score=65.76 Aligned_cols=97 Identities=20% Similarity=0.207 Sum_probs=57.7
Q ss_pred HHHHh-cCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccch-hhhhc
Q 037627 189 LAKLL-NKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTR-ELEEM 266 (858)
Q Consensus 189 ~~~L~-~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~ 266 (858)
-..|. .+=+..+++-|+|++|+||||||.+++.. ....-..++|++....+++. .+..++.....- -....
T Consensus 44 D~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~ 116 (325)
T cd00983 44 DIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPD 116 (325)
T ss_pred HHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCC
Confidence 33443 34356789999999999999999998863 33334568899987776653 334444321100 00011
Q ss_pred cHHHHHHHHHHHhc-CceEEEEEEcCC
Q 037627 267 REEDLERYLHNCLQ-GKSYLVVVDDAW 292 (858)
Q Consensus 267 ~~~~~~~~l~~~l~-~~~~LlvlDd~~ 292 (858)
+.++....+....+ +..-+||+|-+-
T Consensus 117 ~~eq~l~i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 117 TGEQALEIADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred CHHHHHHHHHHHHhccCCCEEEEcchH
Confidence 23344444444443 456689999864
No 253
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.77 E-value=0.0096 Score=55.04 Aligned_cols=119 Identities=19% Similarity=0.163 Sum_probs=64.3
Q ss_pred EEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCC---CCCHHHHHHHHHHhccccc---------cchhhhhcc
Q 037627 200 FVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQ---DYDTKDLLLRIIRSFKINV---------LTRELEEMR 267 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l~~~~---------~~~~~~~~~ 267 (858)
..|-|++..|.||||+|...+- +...+=..+.++-.-. ......++..+ ..+.... .........
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4788898899999999988876 3333322455544322 22333333332 1010000 000000011
Q ss_pred HHHHHHHHHHHhcC-ceEEEEEEcCCCh-----hhHHHHHhhCCCCCCCcEEEEEeCchh
Q 037627 268 EEDLERYLHNCLQG-KSYLVVVDDAWQK-----ETWESLKRAFPDNKNGSRVIITTRIKE 321 (858)
Q Consensus 268 ~~~~~~~l~~~l~~-~~~LlvlDd~~~~-----~~~~~l~~~l~~~~~gs~ilvTtR~~~ 321 (858)
.....+..++.+.. .-=|+|||++-.. -..+.+...+...+.+..+|+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 12233334444444 4459999998532 345666666666677788999999864
No 254
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.77 E-value=0.00055 Score=66.88 Aligned_cols=104 Identities=21% Similarity=0.245 Sum_probs=52.6
Q ss_pred ccccccceeecccccccCcccccCCCeeEEeec--ccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEE
Q 037627 656 SNLQTLKYVERGSWAEINPEKLVNLRDLRIISK--YQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDL 733 (858)
Q Consensus 656 ~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 733 (858)
.+|+.|++.+...++...+..+++|++|.++.| .....+. .....+++|+.|+++.|.+..+..+..+..+.+|..|
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~-vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLE-VLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccce-ehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 344444444444444444555666666666666 3333333 3334446777777776665544444555555555555
Q ss_pred Eeccc----CCCCChhhhhccCCccEEEEec
Q 037627 734 RLSGK----IEKLPEDLHEVLPNLECLSLKK 760 (858)
Q Consensus 734 ~l~~~----~~~~p~~~~~~l~~L~~L~L~~ 760 (858)
++.++ +..--..++..+++|++|+=..
T Consensus 122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 122 DLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hcccCCccccccHHHHHHHHhhhhccccccc
Confidence 55543 1111223344456666555433
No 255
>PRK09354 recA recombinase A; Provisional
Probab=96.76 E-value=0.0038 Score=65.49 Aligned_cols=98 Identities=20% Similarity=0.235 Sum_probs=59.1
Q ss_pred HHHHHh-cCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccc-hhhhh
Q 037627 188 LLAKLL-NKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLT-RELEE 265 (858)
Q Consensus 188 l~~~L~-~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~ 265 (858)
|-.+|. ++=+..+++-|+|++|+||||||.+++.. ....-..++|++....+++. .++.++..... --...
T Consensus 48 LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp 120 (349)
T PRK09354 48 LDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQP 120 (349)
T ss_pred HHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecC
Confidence 334444 34456789999999999999999998863 33334568999988777653 34444433110 00001
Q ss_pred ccHHHHHHHHHHHhc-CceEEEEEEcCC
Q 037627 266 MREEDLERYLHNCLQ-GKSYLVVVDDAW 292 (858)
Q Consensus 266 ~~~~~~~~~l~~~l~-~~~~LlvlDd~~ 292 (858)
...++....+...++ +..-+||+|-+-
T Consensus 121 ~~~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 121 DTGEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred CCHHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 123334444444443 456689999875
No 256
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.76 E-value=0.0075 Score=70.74 Aligned_cols=116 Identities=13% Similarity=0.083 Sum_probs=64.7
Q ss_pred CceeeccccHHHHHHHHhcC-------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHH
Q 037627 176 GNVVGFDDDVSKLLAKLLNK-------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLL 248 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 248 (858)
..++|-+..++.+...+... ......+.++|++|+|||++|+.++.. ... ..+.++.+...... ...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~~---~~i~id~se~~~~~-~~~ 531 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LGI---ELLRFDMSEYMERH-TVS 531 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hCC---CcEEeechhhcccc-cHH
Confidence 46899999999998887632 122457899999999999999999873 322 23444444322111 111
Q ss_pred HHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh--hhHHHHHhhCC
Q 037627 249 RIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK--ETWESLKRAFP 305 (858)
Q Consensus 249 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~ 305 (858)
.+ ++.+.. -........+.+.+++ ...-+|+||+++.. +.+..+...+.
T Consensus 532 ~L---iG~~~g--yvg~~~~g~L~~~v~~---~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 532 RL---IGAPPG--YVGFDQGGLLTDAVIK---HPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred HH---cCCCCC--cccccccchHHHHHHh---CCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 22 222110 0000001122222222 33469999999855 45566665554
No 257
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.75 E-value=0.0076 Score=55.99 Aligned_cols=61 Identities=16% Similarity=0.259 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCceEEEEEEcC----CChhhHHHHHhhCCCCCCCcEEEEEeCchhHHhhcCCC
Q 037627 269 EDLERYLHNCLQGKSYLVVVDDA----WQKETWESLKRAFPDNKNGSRVIITTRIKEVAERSDEN 329 (858)
Q Consensus 269 ~~~~~~l~~~l~~~~~LlvlDd~----~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~~~~~~~~~ 329 (858)
++-.-.|.+.+-+++-+|+-|+- +....|+-+.-+-.-...|..||++|.+.++...+...
T Consensus 142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~r 206 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHR 206 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCc
Confidence 34445566777789999999975 33334443322211234588999999999887766543
No 258
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.75 E-value=0.0046 Score=62.97 Aligned_cols=67 Identities=21% Similarity=0.271 Sum_probs=44.4
Q ss_pred HHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCcccc----CCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 188 LLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVK----NKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 188 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
|-+.|.++=....+.=|+|++|+|||.|+.+++-..... +.-..++|++-...++++++. +|++...
T Consensus 27 lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 27 LDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred HHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 334443332345699999999999999998887532222 122469999999888887764 5665543
No 259
>PRK06921 hypothetical protein; Provisional
Probab=96.75 E-value=0.0053 Score=62.88 Aligned_cols=37 Identities=22% Similarity=0.230 Sum_probs=28.2
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCC-cceEEEEEe
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNK-FDRCAWVSV 237 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~wv~~ 237 (858)
...+.++|.+|+|||+||..+++. .... ...++|++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH
Confidence 567999999999999999999984 3322 345667764
No 260
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.74 E-value=0.0034 Score=65.60 Aligned_cols=117 Identities=13% Similarity=0.164 Sum_probs=64.2
Q ss_pred eccccHHHHHHHHhcCC--CCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcccc
Q 037627 180 GFDDDVSKLLAKLLNKE--PRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKIN 257 (858)
Q Consensus 180 Gr~~~~~~l~~~L~~~~--~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 257 (858)
+|....+...+++.... ...+-+.|+|..|+|||.||..+++. ....-..+.+++++ .++..+.......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~~------~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHFP------EFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEHH------HHHHHHHHHHhcC
Confidence 34444444455554321 23567999999999999999999984 32222235666553 4445554433211
Q ss_pred ccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh--hhHH--HHHhhC-CCC-CCCcEEEEEeC
Q 037627 258 VLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK--ETWE--SLKRAF-PDN-KNGSRVIITTR 318 (858)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~--~l~~~l-~~~-~~gs~ilvTtR 318 (858)
+... .+.. + .+-=||||||+... ..|. ++...+ ... ..+-.+|+||-
T Consensus 207 ---------~~~~---~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 207 ---------SVKE---KIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred ---------cHHH---HHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 1112 2222 2 34558999999633 4554 344433 211 13445888886
No 261
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.74 E-value=0.042 Score=62.47 Aligned_cols=65 Identities=15% Similarity=0.243 Sum_probs=48.3
Q ss_pred cCCceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCC
Q 037627 174 IEGNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQD 240 (858)
Q Consensus 174 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 240 (858)
....++|+...++++.+.+..-.....-|.|+|..|+|||++|+.+.+. ....-...+.+++...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~--s~r~~~p~v~v~c~~~ 249 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAA--SPRADKPLVYLNCAAL 249 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh--CCcCCCCeEEEEcccC
Confidence 3467999999999999988766555678999999999999999999873 1111123455665543
No 262
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.72 E-value=0.0012 Score=69.08 Aligned_cols=46 Identities=20% Similarity=0.419 Sum_probs=39.9
Q ss_pred ceeeccccHHHHHHHHhcC----CCCcEEEEEEecCcchHHHHHHHHhcC
Q 037627 177 NVVGFDDDVSKLLAKLLNK----EPRRFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 177 ~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
.++|.++.++++++++... +...+++.++|++|+||||||+.+++.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999998653 335689999999999999999999874
No 263
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.71 E-value=0.0064 Score=64.16 Aligned_cols=66 Identities=18% Similarity=0.269 Sum_probs=45.9
Q ss_pred HHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCcccc----CCcceEEEEEeCCCCCHHHHHHHHHHhccc
Q 037627 190 AKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVK----NKFDRCAWVSVSQDYDTKDLLLRIIRSFKI 256 (858)
Q Consensus 190 ~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 256 (858)
+.|.++=+...+.-|+|++|+|||+|+.+++-..... ..-..++|++....++++++.. +++.++.
T Consensus 117 ~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 117 ELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred hhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 3444443556899999999999999999987422221 1124689999999888877544 5565554
No 264
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.68 E-value=0.0079 Score=60.86 Aligned_cols=95 Identities=17% Similarity=0.248 Sum_probs=55.2
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCc-ceEEEEEeCCCC-CHHHHHHHHHHhccccc--------cchhhhhcc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKF-DRCAWVSVSQDY-DTKDLLLRIIRSFKINV--------LTRELEEMR 267 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~--------~~~~~~~~~ 267 (858)
+.+.++|.|.+|+|||||++.+++ ..+.+| +.++++-+++.. ...++...+...-.... .........
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 456899999999999999999998 555555 445555665543 34455555543211110 000011111
Q ss_pred HHHHHHHHHHHh--c-CceEEEEEEcCCCh
Q 037627 268 EEDLERYLHNCL--Q-GKSYLVVVDDAWQK 294 (858)
Q Consensus 268 ~~~~~~~l~~~l--~-~~~~LlvlDd~~~~ 294 (858)
.-...-.+.+++ + ++.+|+++||+-..
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 112223344444 3 88999999998543
No 265
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.68 E-value=0.0077 Score=63.12 Aligned_cols=68 Identities=18% Similarity=0.223 Sum_probs=46.7
Q ss_pred HHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCcccc----CCcceEEEEEeCCCCCHHHHHHHHHHhccc
Q 037627 188 LLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVK----NKFDRCAWVSVSQDYDTKDLLLRIIRSFKI 256 (858)
Q Consensus 188 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 256 (858)
+-+.|.++=+..+++-|+|++|+|||+|+.+++-..... ..=..++|++....++++.+. ++++.++.
T Consensus 85 LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~ 156 (313)
T TIGR02238 85 LDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGV 156 (313)
T ss_pred HHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 334454444567899999999999999999877422221 112468999999888887764 45665543
No 266
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.67 E-value=0.005 Score=64.13 Aligned_cols=97 Identities=21% Similarity=0.229 Sum_probs=57.4
Q ss_pred HHHHh-cCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccc-hhhhhc
Q 037627 189 LAKLL-NKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLT-RELEEM 266 (858)
Q Consensus 189 ~~~L~-~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~ 266 (858)
-..|. .+=+..+++.|+|++|+||||||.+++.. ....-..++|++..+.+++. .++.++..... .-....
T Consensus 44 D~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~ 116 (321)
T TIGR02012 44 DLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPD 116 (321)
T ss_pred HHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCC
Confidence 33443 34456789999999999999999998763 33333568899887766553 34444432110 000011
Q ss_pred cHHHHHHHHHHHhc-CceEEEEEEcCC
Q 037627 267 REEDLERYLHNCLQ-GKSYLVVVDDAW 292 (858)
Q Consensus 267 ~~~~~~~~l~~~l~-~~~~LlvlDd~~ 292 (858)
..++....+....+ +..-+||+|-+.
T Consensus 117 ~~eq~l~~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 117 TGEQALEIAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred CHHHHHHHHHHHhhccCCcEEEEcchh
Confidence 23334444444443 456689999875
No 267
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.66 E-value=0.00029 Score=61.31 Aligned_cols=72 Identities=22% Similarity=0.312 Sum_probs=58.3
Q ss_pred eeeeccCCccccccccCCCCCccccccC-CcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVK-LVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKEL 639 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~-l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L 639 (858)
...+|++|. ++ .+|+.|.. .+.++.|+|++|.|+.+|..+..++.|+.|+++.| .+...|..+..|.+|
T Consensus 56 ~~i~ls~N~-------fk--~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l 125 (177)
T KOG4579|consen 56 TKISLSDNG-------FK--KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKL 125 (177)
T ss_pred EEEecccch-------hh--hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhH
Confidence 445788888 77 88877754 45889999999999999999999999999999999 666778777777777
Q ss_pred ccc
Q 037627 640 RHL 642 (858)
Q Consensus 640 ~~L 642 (858)
-.|
T Consensus 126 ~~L 128 (177)
T KOG4579|consen 126 DML 128 (177)
T ss_pred HHh
Confidence 766
No 268
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.65 E-value=0.012 Score=56.47 Aligned_cols=90 Identities=24% Similarity=0.257 Sum_probs=45.2
Q ss_pred EEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCC-CHHHHHHHHHHhccccccchhhhhccHHHH-HHHHHHH
Q 037627 201 VISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDY-DTKDLLLRIIRSFKINVLTRELEEMREEDL-ERYLHNC 278 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-~~~l~~~ 278 (858)
++.++|++|+||||++..++. .....-..++.++..... ...+.+...+...+.+..... ...+...+ .+.+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~--~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 78 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL--YLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEG-EGKDPVSIAKRAIEHA 78 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecC-CCCCHHHHHHHHHHHH
Confidence 678999999999999999987 332221234455543221 222333333444432211111 11122222 2334443
Q ss_pred hcCceEEEEEEcCCC
Q 037627 279 LQGKSYLVVVDDAWQ 293 (858)
Q Consensus 279 l~~~~~LlvlDd~~~ 293 (858)
..+..-++|+|..-.
T Consensus 79 ~~~~~d~viiDt~g~ 93 (173)
T cd03115 79 REENFDVVIVDTAGR 93 (173)
T ss_pred HhCCCCEEEEECccc
Confidence 444444666887654
No 269
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.65 E-value=0.011 Score=60.12 Aligned_cols=99 Identities=20% Similarity=0.225 Sum_probs=60.2
Q ss_pred HHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHh-ccccccchhhhhccHH
Q 037627 191 KLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRS-FKINVLTRELEEMREE 269 (858)
Q Consensus 191 ~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~~~ 269 (858)
.|-.+-+..+++=|+|+.|+||||+|.+++- ..+..-..++|++....++++.+. +++.. +..-............
T Consensus 52 ~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~ 128 (279)
T COG0468 52 ALGGGLPRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPDTGEQQL 128 (279)
T ss_pred HhcCCcccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCCCHHHHH
Confidence 3434445678999999999999999999887 344444479999999998887643 33333 2111100011111223
Q ss_pred HHHHHHHHHhcCceEEEEEEcCC
Q 037627 270 DLERYLHNCLQGKSYLVVVDDAW 292 (858)
Q Consensus 270 ~~~~~l~~~l~~~~~LlvlDd~~ 292 (858)
.+.+.+......+--|+|+|.+-
T Consensus 129 ~i~~~~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 129 EIAEKLARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHHHHHHHhccCCCCEEEEecCc
Confidence 44444444444445688888873
No 270
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.65 E-value=0.0096 Score=59.24 Aligned_cols=133 Identities=14% Similarity=0.151 Sum_probs=75.3
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCC-----CCCHHHHHHHHHHhcccccc-----chhhhhcc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQ-----DYDTKDLLLRIIRSFKINVL-----TRELEEMR 267 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~ 267 (858)
+..+++|+|..|+||||+++.+.. .-..-.+.+++...+ .....+-..+++..++.... +.....
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG-- 112 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSG-- 112 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCc--
Confidence 356999999999999999999996 333333444444221 11233445566666664321 111111
Q ss_pred HHHHHHHHHHHhcCceEEEEEEcCCChhh---HHHHHhhCCC--CCCCcEEEEEeCchhHHhhcCCCCceeec
Q 037627 268 EEDLERYLHNCLQGKSYLVVVDDAWQKET---WESLKRAFPD--NKNGSRVIITTRIKEVAERSDENAYAHKL 335 (858)
Q Consensus 268 ~~~~~~~l~~~l~~~~~LlvlDd~~~~~~---~~~l~~~l~~--~~~gs~ilvTtR~~~~~~~~~~~~~~~~l 335 (858)
-+.-.-.+.+.+.-++-++|.|+.-+.-+ -.++...+.. ...|...+..|-+-.+...+.....+..+
T Consensus 113 GQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~ 185 (268)
T COG4608 113 GQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYL 185 (268)
T ss_pred hhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEec
Confidence 11223346667788999999999754321 1223222221 12355678888887777766554333333
No 271
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.64 E-value=0.011 Score=56.88 Aligned_cols=123 Identities=16% Similarity=0.207 Sum_probs=64.8
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeC--CCCCHHHH------HHHHHHhcccccc-chhhhhccH-
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVS--QDYDTKDL------LLRIIRSFKINVL-TRELEEMRE- 268 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~--~~~~~~~~------~~~i~~~l~~~~~-~~~~~~~~~- 268 (858)
..+++|.|+.|.|||||++.++.. .....+.+++.-. ...+.... ..++++.++.... .......+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGL---LKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 469999999999999999999863 2223444444311 11122221 1123444443221 001111122
Q ss_pred HHHHHHHHHHhcCceEEEEEEcCCC---hhhHHHHHhhCCCC--CCCcEEEEEeCchhHHh
Q 037627 269 EDLERYLHNCLQGKSYLVVVDDAWQ---KETWESLKRAFPDN--KNGSRVIITTRIKEVAE 324 (858)
Q Consensus 269 ~~~~~~l~~~l~~~~~LlvlDd~~~---~~~~~~l~~~l~~~--~~gs~ilvTtR~~~~~~ 324 (858)
+...-.+.+.+...+-++++|+.-. .+..+.+...+... ..+..||++|.+.....
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 2223345556667888999999753 23333443333321 11567888888766543
No 272
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.63 E-value=0.02 Score=60.56 Aligned_cols=102 Identities=20% Similarity=0.271 Sum_probs=55.7
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCC-CHHHHHHHHHHhccccccchhhhhccHHHHHHHHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDY-DTKDLLLRIIRSFKINVLTRELEEMREEDLERYLH 276 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 276 (858)
..++|+|+|++|+||||++..++.. ....-..+..++..... ...+-+...+..++.+.. ...+...+.+.+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~----v~~d~~~L~~aL~ 313 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI----AVRDEAAMTRALT 313 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEE----ecCCHHHHHHHHH
Confidence 3579999999999999999999873 22221235555554321 233334444444443321 1123445555554
Q ss_pred HHhcC-ceEEEEEEcCCCh----hhHHHHHhhCC
Q 037627 277 NCLQG-KSYLVVVDDAWQK----ETWESLKRAFP 305 (858)
Q Consensus 277 ~~l~~-~~~LlvlDd~~~~----~~~~~l~~~l~ 305 (858)
..-.. +-=+|++|-.-.. ..+.++...+.
T Consensus 314 ~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk 347 (436)
T PRK11889 314 YFKEEARVDYILIDTAGKNYRASETVEEMIETMG 347 (436)
T ss_pred HHHhccCCCEEEEeCccccCcCHHHHHHHHHHHh
Confidence 43221 2347888987432 34555555443
No 273
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.62 E-value=0.0062 Score=61.85 Aligned_cols=75 Identities=27% Similarity=0.274 Sum_probs=45.8
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHN 277 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 277 (858)
+..-+.++|.+|+|||.||.+++++.. ..--.+.++++ .+++.++....... .....+.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~--~~g~sv~f~~~------~el~~~Lk~~~~~~------------~~~~~l~~ 163 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL--KAGISVLFITA------PDLLSKLKAAFDEG------------RLEEKLLR 163 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEEH------HHHHHHHHHHHhcC------------chHHHHHH
Confidence 456899999999999999999999533 22234666654 35555555443321 11112222
Q ss_pred HhcCceEEEEEEcCCC
Q 037627 278 CLQGKSYLVVVDDAWQ 293 (858)
Q Consensus 278 ~l~~~~~LlvlDd~~~ 293 (858)
.+ .+-=||||||+-.
T Consensus 164 ~l-~~~dlLIiDDlG~ 178 (254)
T COG1484 164 EL-KKVDLLIIDDIGY 178 (254)
T ss_pred Hh-hcCCEEEEecccC
Confidence 12 2234899999864
No 274
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.61 E-value=0.1 Score=54.16 Aligned_cols=152 Identities=5% Similarity=0.003 Sum_probs=89.8
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCc--------cccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNN--------DVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREE 269 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~--------~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 269 (858)
-.++..++|..|+||+++|..+.+.. ....+-+...+++.... ....+
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~------------------------~i~vd 72 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDK------------------------DLSKS 72 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCC------------------------cCCHH
Confidence 35677899999999999999987631 00111112333321111 11122
Q ss_pred HHHHHHHHHh-----cCceEEEEEEcCCChh--hHHHHHhhCCCCCCCcEEEEEeCch-hHHhhcCCCCceeecCCCChh
Q 037627 270 DLERYLHNCL-----QGKSYLVVVDDAWQKE--TWESLKRAFPDNKNGSRVIITTRIK-EVAERSDENAYAHKLRFLRSD 341 (858)
Q Consensus 270 ~~~~~l~~~l-----~~~~~LlvlDd~~~~~--~~~~l~~~l~~~~~gs~ilvTtR~~-~~~~~~~~~~~~~~l~~L~~~ 341 (858)
++.+.+...- .+.+-++|+|+++... ....+...+...++++.+|++|.+. .+..........+++.+++++
T Consensus 73 ~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~ 152 (299)
T PRK07132 73 EFLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQ 152 (299)
T ss_pred HHHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHH
Confidence 3332222210 1467789999998663 4667888887777778777666443 333333333478999999999
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHH
Q 037627 342 ESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVV 381 (858)
Q Consensus 342 e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~ 381 (858)
+..+.+... + . + ++.+..++...+|.=-|+..
T Consensus 153 ~l~~~l~~~--~-~--~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 153 KILAKLLSK--N-K--E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred HHHHHHHHc--C-C--C---hhHHHHHHHHcCCHHHHHHH
Confidence 999887654 1 1 1 24456677777763345444
No 275
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.59 E-value=0.011 Score=59.69 Aligned_cols=99 Identities=17% Similarity=0.227 Sum_probs=59.5
Q ss_pred HHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccch-------
Q 037627 189 LAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTR------- 261 (858)
Q Consensus 189 ~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~------- 261 (858)
-+.|.++=+...++.|+|.+|+|||+||.+++.. ...+=..++|++..+. +..+.+++ .+++......
T Consensus 15 D~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~--~~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~ 89 (234)
T PRK06067 15 DRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYG--ALKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLR 89 (234)
T ss_pred HHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHH--HHhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCce
Confidence 3344344456789999999999999999999763 2122346889988654 45555543 3333221100
Q ss_pred ---------hhhhccHHHHHHHHHHHhcC-ceEEEEEEcCC
Q 037627 262 ---------ELEEMREEDLERYLHNCLQG-KSYLVVVDDAW 292 (858)
Q Consensus 262 ---------~~~~~~~~~~~~~l~~~l~~-~~~LlvlDd~~ 292 (858)
.......+.+...+.+.+.. +.-++|+|.+.
T Consensus 90 i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 90 IFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred EEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 00112234566666666543 55689999975
No 276
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.58 E-value=0.0015 Score=58.44 Aligned_cols=21 Identities=48% Similarity=0.638 Sum_probs=20.0
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 037627 201 VISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~ 221 (858)
+|+|+|++|+||||+|+.+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999997
No 277
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.56 E-value=0.0064 Score=56.13 Aligned_cols=21 Identities=43% Similarity=0.642 Sum_probs=19.5
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 037627 201 VISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~ 221 (858)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999985
No 278
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.55 E-value=0.0047 Score=60.48 Aligned_cols=111 Identities=18% Similarity=0.164 Sum_probs=59.8
Q ss_pred EEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHHh
Q 037627 200 FVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCL 279 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 279 (858)
.++.|+|+.|+||||++..+... ........++. +..+.. ..... ...+-... +. ..+.....+.++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E--~~~~~-~~~~i~q~---~v-g~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIE--FVHES-KRSLINQR---EV-GLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCcc--ccccC-ccceeeec---cc-CCCccCHHHHHHHHh
Confidence 47899999999999999988763 32222333332 222111 00000 00000000 00 011223455677777
Q ss_pred cCceEEEEEEcCCChhhHHHHHhhCCCCCCCcEEEEEeCchhHH
Q 037627 280 QGKSYLVVVDDAWQKETWESLKRAFPDNKNGSRVIITTRIKEVA 323 (858)
Q Consensus 280 ~~~~~LlvlDd~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~~~ 323 (858)
...+=.|++|++.+.+.+..+..... .|..++.|+-.....
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~a~---~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTAAE---TGHLVMSTLHTNSAA 112 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHHHH---cCCEEEEEecCCcHH
Confidence 77788999999988776665544332 345577777654433
No 279
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.52 E-value=0.0011 Score=63.47 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=25.4
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEe
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSV 237 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 237 (858)
..-+.|+|.+|+|||.||..+++.. .+.. ..+.|++.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~-~~~g-~~v~f~~~ 83 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEA-IRKG-YSVLFITA 83 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHH-HHTT---EEEEEH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHh-ccCC-cceeEeec
Confidence 4579999999999999999998742 2222 24666654
No 280
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.52 E-value=0.01 Score=62.48 Aligned_cols=68 Identities=16% Similarity=0.205 Sum_probs=45.1
Q ss_pred HHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCcccc---C-CcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 187 KLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVK---N-KFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 187 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
.+-+.|.++-+...++.|+|.+|+|||+|+..++...... . .-..++|++....+++.. +.++++.++
T Consensus 84 ~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~ 155 (316)
T TIGR02239 84 ELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYG 155 (316)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcC
Confidence 3344454444567899999999999999999987521111 1 113579999888777775 444555544
No 281
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.36 Score=51.63 Aligned_cols=154 Identities=14% Similarity=0.109 Sum_probs=81.9
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNC 278 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 278 (858)
.|=-.++||+|.|||+++.++++... |+ +.=+.++...+..+ ++.++..
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~----yd-IydLeLt~v~~n~d-Lr~LL~~------------------------- 283 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLN----YD-IYDLELTEVKLDSD-LRHLLLA------------------------- 283 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcC----Cc-eEEeeeccccCcHH-HHHHHHh-------------------------
Confidence 35678999999999999999998321 32 22223332222222 2222221
Q ss_pred hcCceEEEEEEcCCCh--------h------------hHHHHHhhCCC---CCCCcEE-EEEeCchhHHhh--cCC--CC
Q 037627 279 LQGKSYLVVVDDAWQK--------E------------TWESLKRAFPD---NKNGSRV-IITTRIKEVAER--SDE--NA 330 (858)
Q Consensus 279 l~~~~~LlvlDd~~~~--------~------------~~~~l~~~l~~---~~~gs~i-lvTtR~~~~~~~--~~~--~~ 330 (858)
...+-+||+.|++.. + .+.-++.++.. .+.+-|| |.||-..+.... +.+ -.
T Consensus 284 -t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmD 362 (457)
T KOG0743|consen 284 -TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMD 362 (457)
T ss_pred -CCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcce
Confidence 134567777777632 0 12224444431 2223455 457765533221 111 11
Q ss_pred ceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhHh-cCC
Q 037627 331 YAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVLGGLL-SMK 389 (858)
Q Consensus 331 ~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l-~~~ 389 (858)
.++.++-=+.+....|+........ + ..++.+|.+...|.-+.=..++..+ ..+
T Consensus 363 mhI~mgyCtf~~fK~La~nYL~~~~-~----h~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 363 MHIYMGYCTFEAFKTLASNYLGIEE-D----HRLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred eEEEcCCCCHHHHHHHHHHhcCCCC-C----cchhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 5688888889888888888775433 1 2344555555555544444444444 444
No 282
>PRK14974 cell division protein FtsY; Provisional
Probab=96.51 E-value=0.014 Score=61.40 Aligned_cols=94 Identities=19% Similarity=0.167 Sum_probs=49.2
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCC-CCHHHHHHHHHHhccccccchhhhhccHHH-HHHHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQD-YDTKDLLLRIIRSFKINVLTRELEEMREED-LERYL 275 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~-~~~~l 275 (858)
+..++.++|++|+||||++..++.... ...+ .++.+..... ....+.+...+..++.+...... ..+... +.+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~-g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKY-GADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccC-CCCHHHHHHHHH
Confidence 467999999999999998888876322 1223 3444443211 12334455566666644321111 111222 23333
Q ss_pred HHHhcCceEEEEEEcCCCh
Q 037627 276 HNCLQGKSYLVVVDDAWQK 294 (858)
Q Consensus 276 ~~~l~~~~~LlvlDd~~~~ 294 (858)
...-....=+|++|-+...
T Consensus 216 ~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHhCCCCEEEEECCCcc
Confidence 3322222239999998543
No 283
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.50 E-value=0.0041 Score=63.64 Aligned_cols=136 Identities=19% Similarity=0.288 Sum_probs=72.2
Q ss_pred ccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCc-cccCCcceEE-EE---EeCCC---------CCHHHH
Q 037627 181 FDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNN-DVKNKFDRCA-WV---SVSQD---------YDTKDL 246 (858)
Q Consensus 181 r~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~-~~~~~f~~~~-wv---~~~~~---------~~~~~~ 246 (858)
|..+..--+++|.+++ ...|.+.|.+|.|||-||.++.-.. ..+..|..++ .- .+++. ..+...
T Consensus 229 rn~eQ~~ALdlLld~d--I~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PW 306 (436)
T COG1875 229 RNAEQRVALDLLLDDD--IDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPW 306 (436)
T ss_pred ccHHHHHHHHHhcCCC--CCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccch
Confidence 5566666667777665 8899999999999999998765421 2234443322 21 22221 111122
Q ss_pred HHHHHHhccccccchhhhhccHHHHHHHHH---------HHhcCc---eEEEEEEcCCChhhHHHHHhhCCCCCCCcEEE
Q 037627 247 LLRIIRSFKINVLTRELEEMREEDLERYLH---------NCLQGK---SYLVVVDDAWQKETWESLKRAFPDNKNGSRVI 314 (858)
Q Consensus 247 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~---------~~l~~~---~~LlvlDd~~~~~~~~~l~~~l~~~~~gs~il 314 (858)
+..|...+..-.. ........+...+. .+.+++ .-+||+|++.+.+. .+++..+...+.||||+
T Consensus 307 mq~i~DnLE~L~~---~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp-heikTiltR~G~GsKIV 382 (436)
T COG1875 307 MQAIFDNLEVLFS---PNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP-HELKTILTRAGEGSKIV 382 (436)
T ss_pred HHHHHhHHHHHhc---ccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH-HHHHHHHHhccCCCEEE
Confidence 2222222211000 01111111111111 123454 46999999987643 34455556778899999
Q ss_pred EEeCchhH
Q 037627 315 ITTRIKEV 322 (858)
Q Consensus 315 vTtR~~~~ 322 (858)
+|.-..++
T Consensus 383 l~gd~aQi 390 (436)
T COG1875 383 LTGDPAQI 390 (436)
T ss_pred EcCCHHHc
Confidence 99864443
No 284
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.0037 Score=71.72 Aligned_cols=154 Identities=12% Similarity=0.086 Sum_probs=83.9
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccC-Cc------ceEEEEEeCCCCCHHHHHH
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKN-KF------DRCAWVSVSQDYDTKDLLL 248 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~-~f------~~~~wv~~~~~~~~~~~~~ 248 (858)
+.++||+.|++++++.|.....+- -.++|.+|+|||++|.-++.. +.. .- ..++-++++
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNN--PvLiGEpGVGKTAIvEGLA~r--Iv~g~VP~~L~~~~i~sLD~g---------- 235 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNN--PVLVGEPGVGKTAIVEGLAQR--IVNGDVPESLKDKRIYSLDLG---------- 235 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCC--CeEecCCCCCHHHHHHHHHHH--HhcCCCCHHHcCCEEEEecHH----------
Confidence 568999999999999998664232 356799999999999888773 221 11 111111111
Q ss_pred HHHHhccccccchhhhhccHHHHHHHHHHHh-cCceEEEEEEcCCCh----------hhHHHHHhhCCCCCCCcEEEEEe
Q 037627 249 RIIRSFKINVLTRELEEMREEDLERYLHNCL-QGKSYLVVVDDAWQK----------ETWESLKRAFPDNKNGSRVIITT 317 (858)
Q Consensus 249 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDd~~~~----------~~~~~l~~~l~~~~~gs~ilvTt 317 (858)
.-..+... . .+.++....+.+.+ +..++.|++|.++.. -+...++.+....+.--.|=.||
T Consensus 236 ---~LvAGaky----R-GeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT 307 (786)
T COG0542 236 ---SLVAGAKY----R-GEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATT 307 (786)
T ss_pred ---HHhccccc----c-CcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEecc
Confidence 00111100 0 11233333333333 345899999998743 11222332222222222244566
Q ss_pred CchhHH-----hhcCCCCceeecCCCChhHHHHHHHHHh
Q 037627 318 RIKEVA-----ERSDENAYAHKLRFLRSDESWELFCEKA 351 (858)
Q Consensus 318 R~~~~~-----~~~~~~~~~~~l~~L~~~e~~~l~~~~~ 351 (858)
-++--- .........+.+..-+.+++..+++...
T Consensus 308 ~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 308 LDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 544211 1111222788999999999999987654
No 285
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.051 Score=60.62 Aligned_cols=174 Identities=17% Similarity=0.132 Sum_probs=95.4
Q ss_pred eeeccccHHHHHHHHhcCC-----------CCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHH
Q 037627 178 VVGFDDDVSKLLAKLLNKE-----------PRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDL 246 (858)
Q Consensus 178 ~vGr~~~~~~l~~~L~~~~-----------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 246 (858)
+=|..+..+.+.+.+.-+. ....-|.++|++|+|||.||.+++.. .. .-++++-.+ ++
T Consensus 669 igg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~--~~-----~~fisvKGP----El 737 (952)
T KOG0735|consen 669 IGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASN--SN-----LRFISVKGP----EL 737 (952)
T ss_pred cccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhh--CC-----eeEEEecCH----HH
Confidence 4445555555555554331 12345889999999999999999973 11 335666543 22
Q ss_pred HHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh-------------hhHHHHHhhCCC--CCCCc
Q 037627 247 LLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK-------------ETWESLKRAFPD--NKNGS 311 (858)
Q Consensus 247 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-------------~~~~~l~~~l~~--~~~gs 311 (858)
+.. .+|. +.+.+.+.+.+.-..+++++.||++++. ....+++..+.. +-.|.
T Consensus 738 L~K---yIGa----------SEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV 804 (952)
T KOG0735|consen 738 LSK---YIGA----------SEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGV 804 (952)
T ss_pred HHH---Hhcc----------cHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceE
Confidence 221 2221 2345555666666789999999999753 134556655553 23466
Q ss_pred EEEE-EeCchhHHhhcCC-C-CceeecCC-CChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHH
Q 037627 312 RVII-TTRIKEVAERSDE-N-AYAHKLRF-LRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLA 378 (858)
Q Consensus 312 ~ilv-TtR~~~~~~~~~~-~-~~~~~l~~-L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pla 378 (858)
-|+- |||..-+....-. + ....-.-+ -++.|-.++|...+.....+. .-..+.++.+++|.--|
T Consensus 805 ~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~---~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 805 YILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDT---DVDLECLAQKTDGFTGA 872 (952)
T ss_pred EEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCcc---ccchHHHhhhcCCCchh
Confidence 5654 5565433222111 1 12222333 345566677766554322211 22346677777777643
No 286
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.46 E-value=0.017 Score=55.65 Aligned_cols=120 Identities=17% Similarity=0.046 Sum_probs=60.2
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcccccc-----chh-----hhhccH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVL-----TRE-----LEEMRE 268 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~-----~~~~~~ 268 (858)
..+++|.|+.|.|||||++.++-.. ....+.+++.-. +.......+...++.-.. +.. ....+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL---KPQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC---CCCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 4589999999999999999998631 122334443221 111111111111111000 000 001111
Q ss_pred -HHHHHHHHHHhcCceEEEEEEcCCCh---hhHHHHHhhCCCCCCCcEEEEEeCchhHHh
Q 037627 269 -EDLERYLHNCLQGKSYLVVVDDAWQK---ETWESLKRAFPDNKNGSRVIITTRIKEVAE 324 (858)
Q Consensus 269 -~~~~~~l~~~l~~~~~LlvlDd~~~~---~~~~~l~~~l~~~~~gs~ilvTtR~~~~~~ 324 (858)
+...-.+.+.+..++-++++|+.... ...+.+...+.....+..||++|.+.....
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 22233455556678889999997532 222333333222123567888888776654
No 287
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.46 E-value=0.0089 Score=57.43 Aligned_cols=37 Identities=35% Similarity=0.676 Sum_probs=29.0
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEE
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVS 236 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~ 236 (858)
...+|.++|+.|+||||+|+.++. .....+..+++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 456999999999999999999997 4555555555553
No 288
>PRK06696 uridine kinase; Validated
Probab=96.45 E-value=0.0052 Score=61.55 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=33.7
Q ss_pred ccccHHHHHHHHhc-CCCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 181 FDDDVSKLLAKLLN-KEPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 181 r~~~~~~l~~~L~~-~~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
|+.-+++|.+.+.. ..+...+|+|.|.+|+||||||+.++.
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 56667777777764 344678999999999999999999997
No 289
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.45 E-value=0.0079 Score=63.35 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=27.8
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEe
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSV 237 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 237 (858)
...+.++|.+|+|||.||..+++. ....-..++++++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEH
Confidence 367999999999999999999984 2222235677665
No 290
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.44 E-value=0.03 Score=56.40 Aligned_cols=122 Identities=19% Similarity=0.233 Sum_probs=67.4
Q ss_pred HHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcccccc----------
Q 037627 190 AKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVL---------- 259 (858)
Q Consensus 190 ~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------- 259 (858)
+.|..+=+...++.|.|.+|+||||||.+++.. ....-..++|++.... .+.+... +.+++....
T Consensus 11 ~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~--~~~~g~~~~~is~e~~--~~~i~~~-~~~~g~~~~~~~~~~~l~i 85 (229)
T TIGR03881 11 KLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYK--GLRDGDPVIYVTTEES--RESIIRQ-AAQFGMDFEKAIEEGKLVI 85 (229)
T ss_pred HhhcCCCcCCeEEEEECCCCCChHHHHHHHHHH--HHhcCCeEEEEEccCC--HHHHHHH-HHHhCCCHHHHhhcCCEEE
Confidence 334344345689999999999999999987752 1122346888887543 3343333 333322110
Q ss_pred c----------hhhhhccHHHHHHHHHHHhcC---ceEEEEEEcCCCh-----hhHHH----HHhhCCCCCCCcEEEEEe
Q 037627 260 T----------RELEEMREEDLERYLHNCLQG---KSYLVVVDDAWQK-----ETWES----LKRAFPDNKNGSRVIITT 317 (858)
Q Consensus 260 ~----------~~~~~~~~~~~~~~l~~~l~~---~~~LlvlDd~~~~-----~~~~~----l~~~l~~~~~gs~ilvTt 317 (858)
. ......+.+++...+++..+. +.-.+|+|.+... ..... +...+. ..|..+|+|+
T Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~--~~~~tvil~~ 163 (229)
T TIGR03881 86 IDALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLN--RWNFTILLTS 163 (229)
T ss_pred EEccccccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHH--hCCCEEEEEe
Confidence 0 000123456666666665543 3458899997532 11222 222222 3467788887
Q ss_pred C
Q 037627 318 R 318 (858)
Q Consensus 318 R 318 (858)
.
T Consensus 164 ~ 164 (229)
T TIGR03881 164 Q 164 (229)
T ss_pred c
Confidence 5
No 291
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.43 E-value=0.021 Score=66.50 Aligned_cols=172 Identities=13% Similarity=0.124 Sum_probs=88.7
Q ss_pred ceeeccccHHHHHHHHh---cC-------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHH
Q 037627 177 NVVGFDDDVSKLLAKLL---NK-------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDL 246 (858)
Q Consensus 177 ~~vGr~~~~~~l~~~L~---~~-------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 246 (858)
++.|.+...+++.+.+. .+ ..-.+-+.|+|++|+|||++|+.++. .....| +.++.+. +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~--~~~~~f---~~is~~~------~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG--EAKVPF---FTISGSD------F 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH--HcCCCE---EEEehHH------h
Confidence 45676666655544432 11 11134599999999999999999987 333333 2222221 1
Q ss_pred HHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh------------hh----HHHHHhhCCCC--C
Q 037627 247 LLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK------------ET----WESLKRAFPDN--K 308 (858)
Q Consensus 247 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~------------~~----~~~l~~~l~~~--~ 308 (858)
. .+ ... .....+...+.......+.+|++|+++.. .. ...+...+... .
T Consensus 222 ~-~~---~~g---------~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~ 288 (644)
T PRK10733 222 V-EM---FVG---------VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 288 (644)
T ss_pred H-Hh---hhc---------ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC
Confidence 1 00 000 01122333333334457899999998753 11 22233333322 2
Q ss_pred CCcEEEEEeCchhHHhh-cC---CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCC
Q 037627 309 NGSRVIITTRIKEVAER-SD---ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGL 375 (858)
Q Consensus 309 ~gs~ilvTtR~~~~~~~-~~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 375 (858)
.+.-+|.||..++.... .. .....+.++.-+.++-.+++..+......... -....+++.+.|.
T Consensus 289 ~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~---~d~~~la~~t~G~ 356 (644)
T PRK10733 289 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD---IDAAIIARGTPGF 356 (644)
T ss_pred CCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCc---CCHHHHHhhCCCC
Confidence 34445557766543221 11 11256778888888888888777654322111 1123466666553
No 292
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.051 Score=54.07 Aligned_cols=174 Identities=18% Similarity=0.216 Sum_probs=91.8
Q ss_pred CceeeccccHHHHHHHHhc----------CCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHH
Q 037627 176 GNVVGFDDDVSKLLAKLLN----------KEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKD 245 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 245 (858)
+++-|-+...+.|.+...- ....-+-|.++|++|.||+.||++|+.. ... -|++++..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE--AnS-----TFFSvSSS----- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE--ANS-----TFFSVSSS----- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh--cCC-----ceEEeehH-----
Confidence 3567888888887776432 2234678999999999999999999973 222 34455543
Q ss_pred HHHHHHHhccccccchhhhhccHHHHHHHHHHHh-cCceEEEEEEcCCCh---------hhHHHHHhh----CC---CCC
Q 037627 246 LLLRIIRSFKINVLTRELEEMREEDLERYLHNCL-QGKSYLVVVDDAWQK---------ETWESLKRA----FP---DNK 308 (858)
Q Consensus 246 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDd~~~~---------~~~~~l~~~----l~---~~~ 308 (858)
++.....+. .+.+...+.+.. .+++-.|.+|.++.. +.-+.+... .. ...
T Consensus 201 ---DLvSKWmGE----------SEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~ 267 (439)
T KOG0739|consen 201 ---DLVSKWMGE----------SEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDN 267 (439)
T ss_pred ---HHHHHHhcc----------HHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCC
Confidence 122222111 122333333322 478999999999743 222223222 22 222
Q ss_pred CCcEEEEEeCchhHHhh-cCCCC-ceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCCh
Q 037627 309 NGSRVIITTRIKEVAER-SDENA-YAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLP 376 (858)
Q Consensus 309 ~gs~ilvTtR~~~~~~~-~~~~~-~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 376 (858)
.|.-|+=+|..+-+... +.... ..+- -||++..|+.-+.+.-.+.. +....++..+++.+++.|+-
T Consensus 268 ~gvLVLgATNiPw~LDsAIRRRFekRIY-IPLPe~~AR~~MF~lhlG~t-p~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 268 DGVLVLGATNIPWVLDSAIRRRFEKRIY-IPLPEAHARARMFKLHLGDT-PHVLTEQDFKELARKTEGYS 335 (439)
T ss_pred CceEEEecCCCchhHHHHHHHHhhccee-ccCCcHHHhhhhheeccCCC-ccccchhhHHHHHhhcCCCC
Confidence 34444445554433221 11111 1222 36677777654333222222 12233456678888888765
No 293
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.43 E-value=0.027 Score=55.15 Aligned_cols=59 Identities=15% Similarity=0.278 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhcCceEEEEEEcCC---ChhhHHHHHhhCCC--CCCCcEEEEEeCchhHHhhcC
Q 037627 269 EDLERYLHNCLQGKSYLVVVDDAW---QKETWESLKRAFPD--NKNGSRVIITTRIKEVAERSD 327 (858)
Q Consensus 269 ~~~~~~l~~~l~~~~~LlvlDd~~---~~~~~~~l~~~l~~--~~~gs~ilvTtR~~~~~~~~~ 327 (858)
++-.-.+.+.+...+-+|+-|+-- |.+.-+.+...+.. ...|..||+.|.++.++..+.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 344456777788899999999853 22222333333322 234677999999999998654
No 294
>PRK07667 uridine kinase; Provisional
Probab=96.43 E-value=0.0052 Score=59.91 Aligned_cols=37 Identities=24% Similarity=0.487 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 185 VSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 185 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.+.+.+.+....+...+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4667777776666678999999999999999999987
No 295
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.42 E-value=0.05 Score=55.60 Aligned_cols=129 Identities=19% Similarity=0.129 Sum_probs=68.8
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEE---eCCCCCHHHHHHHHHHhccc-ccc-
Q 037627 185 VSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVS---VSQDYDTKDLLLRIIRSFKI-NVL- 259 (858)
Q Consensus 185 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~---~~~~~~~~~~~~~i~~~l~~-~~~- 259 (858)
.+.++..+... .....++|.|+.|.|||||.+.++.. .. ...+.+++. +....... ++...... +..
T Consensus 98 ~~~~l~~l~~~-~~~~~~~i~g~~g~GKttl~~~l~~~--~~-~~~G~i~~~g~~v~~~d~~~----ei~~~~~~~~q~~ 169 (270)
T TIGR02858 98 ADKLLPYLVRN-NRVLNTLIISPPQCGKTTLLRDLARI--LS-TGISQLGLRGKKVGIVDERS----EIAGCVNGVPQHD 169 (270)
T ss_pred HHHHHHHHHhC-CCeeEEEEEcCCCCCHHHHHHHHhCc--cC-CCCceEEECCEEeecchhHH----HHHHHhccccccc
Confidence 34445555433 23578999999999999999999973 22 223344442 21111122 22222111 000
Q ss_pred -chhhhhccHHHHHHHHHHHh-cCceEEEEEEcCCChhhHHHHHhhCCCCCCCcEEEEEeCchhHHh
Q 037627 260 -TRELEEMREEDLERYLHNCL-QGKSYLVVVDDAWQKETWESLKRAFPDNKNGSRVIITTRIKEVAE 324 (858)
Q Consensus 260 -~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDd~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~~~~ 324 (858)
....+..+...-...+...+ ...+=++++|++...+.+..+...+. .|..+|+||....+..
T Consensus 170 ~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 170 VGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred ccccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 00001011000111222222 25788999999987777777766653 3677999998766544
No 296
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.40 E-value=0.053 Score=63.85 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=37.6
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
+.++|....++++.+.+........-|.|+|..|+||+++|+.+.+
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~ 370 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHN 370 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHH
Confidence 4689999988888887765433344688999999999999999987
No 297
>PTZ00035 Rad51 protein; Provisional
Probab=96.35 E-value=0.02 Score=60.73 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=45.2
Q ss_pred HHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCcccc----CCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 187 KLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVK----NKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 187 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
.+-+.|.++=+...++.|+|++|+|||+|+..++...... ..-..++|++....+++++ +.++++.++
T Consensus 106 ~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g 177 (337)
T PTZ00035 106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFG 177 (337)
T ss_pred HHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhC
Confidence 3444454444567899999999999999999987532211 1223577999887777766 444555544
No 298
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.34 E-value=0.03 Score=51.61 Aligned_cols=104 Identities=18% Similarity=0.190 Sum_probs=56.8
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNC 278 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 278 (858)
..+++|.|+.|.|||||++.++... ....+.+|+.-.. .+..-. + .. .-+...-.+.+.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~~~--~-lS--~G~~~rv~lara 84 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGYFE--Q-LS--GGEKMRLALAKL 84 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEEEc--c-CC--HHHHHHHHHHHH
Confidence 4699999999999999999998632 2234445443210 000000 0 00 011222334555
Q ss_pred hcCceEEEEEEcCC---ChhhHHHHHhhCCCCCCCcEEEEEeCchhHHhh
Q 037627 279 LQGKSYLVVVDDAW---QKETWESLKRAFPDNKNGSRVIITTRIKEVAER 325 (858)
Q Consensus 279 l~~~~~LlvlDd~~---~~~~~~~l~~~l~~~~~gs~ilvTtR~~~~~~~ 325 (858)
+..++-++++|+.. +......+...+... +..||++|.+......
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 66677899999975 333333343333322 2357888877655543
No 299
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.34 E-value=0.023 Score=60.27 Aligned_cols=66 Identities=14% Similarity=0.215 Sum_probs=44.9
Q ss_pred HHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccC----CcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 189 LAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKN----KFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 189 ~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
-+.|.++=+...++.|+|++|+|||+++.+++....... .-..++||+....++++.+. +++..++
T Consensus 85 D~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 85 DELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred HHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 344443434578999999999999999999986422211 11379999998888877643 4455444
No 300
>PRK07261 topology modulation protein; Provisional
Probab=96.33 E-value=0.0058 Score=58.21 Aligned_cols=22 Identities=50% Similarity=0.753 Sum_probs=19.9
Q ss_pred EEEEEecCcchHHHHHHHHhcC
Q 037627 201 VISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
.|.|+|++|+||||||+++...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999863
No 301
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.32 E-value=0.022 Score=60.49 Aligned_cols=67 Identities=15% Similarity=0.239 Sum_probs=45.5
Q ss_pred HHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCC----cceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 188 LLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNK----FDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 188 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
+-+.|.++=+...++-|+|++|+|||+++.+++........ =..++|++....+++..+. ++++.++
T Consensus 91 lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 91 LDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred HHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 33444444355789999999999999999999864222111 1479999998888876654 4444443
No 302
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.32 E-value=0.02 Score=54.60 Aligned_cols=116 Identities=18% Similarity=0.263 Sum_probs=60.6
Q ss_pred cEEEEEEecCcchHHHHHHHHhcC---ccccCC---c--ceEEEEEeCCCCCHHHHHHHHHHhcccccc--chhhhhccH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHN---NDVKNK---F--DRCAWVSVSQDYDTKDLLLRIIRSFKINVL--TRELEEMRE 268 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~---~~~~~~---f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~ 268 (858)
..+++|+|+.|+|||||.+.+..+ ..+... | ..+.|+ .+ .+.+..++.... .......+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 469999999999999999988632 011111 1 012232 11 345555554321 111111221
Q ss_pred H-HHHHHHHHHhcCc--eEEEEEEcCCC---hhhHHHHHhhCCCC-CCCcEEEEEeCchhHHh
Q 037627 269 E-DLERYLHNCLQGK--SYLVVVDDAWQ---KETWESLKRAFPDN-KNGSRVIITTRIKEVAE 324 (858)
Q Consensus 269 ~-~~~~~l~~~l~~~--~~LlvlDd~~~---~~~~~~l~~~l~~~-~~gs~ilvTtR~~~~~~ 324 (858)
. ...-.+.+.+..+ +-++++|+.-. ....+.+...+... ..|..||++|.+.....
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 1 2223344455556 77899999743 23333333333221 13666888888876654
No 303
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.30 E-value=0.0032 Score=69.37 Aligned_cols=45 Identities=20% Similarity=0.434 Sum_probs=39.3
Q ss_pred ceeeccccHHHHHHHHh----cCCCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 177 NVVGFDDDVSKLLAKLL----NKEPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 177 ~~vGr~~~~~~l~~~L~----~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
+++|.++.++++++.|. +-....+++.++|++|+||||||+.+++
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 58999999999999983 2345668999999999999999999986
No 304
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.28 E-value=0.02 Score=58.01 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=40.8
Q ss_pred HHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHH
Q 037627 188 LLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRI 250 (858)
Q Consensus 188 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 250 (858)
+-+.|.++=+...++.|.|.+|+|||++|.++... ....-..++|++... ++..+.+++
T Consensus 10 LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~--~~~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 10 MDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred HHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEEeeC--CHHHHHHHH
Confidence 33444445456789999999999999999998763 212345688998765 455555553
No 305
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.28 E-value=0.032 Score=61.13 Aligned_cols=58 Identities=26% Similarity=0.255 Sum_probs=37.1
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCC-CCHHHHHHHHHHhcccc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQD-YDTKDLLLRIIRSFKIN 257 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~ 257 (858)
.+.++.++|++|+||||.|..++.. .+..-..+..+++... ....+.+..++..++.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~--L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp 152 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY--FKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVP 152 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCc
Confidence 4679999999999999999999873 3322123444554322 12344556666666544
No 306
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.26 E-value=0.015 Score=59.82 Aligned_cols=91 Identities=18% Similarity=0.203 Sum_probs=50.0
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCH--HHHHHHHHHhccccccchhhhhccH-HHHHHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDT--KDLLLRIIRSFKINVLTRELEEMRE-EDLERY 274 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~-~~~~~~ 274 (858)
..+++.++|++|+||||.+..++.. ....-..+.+++... +.. .+-+...+...+.+...... ..+. ......
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~-~~dp~~~~~~~ 146 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKE-GADPAAVAFDA 146 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCC-CCCHHHHHHHH
Confidence 4679999999999999999998873 333323566666543 222 23344445554433211110 1112 222333
Q ss_pred HHHHhcCceEEEEEEcCC
Q 037627 275 LHNCLQGKSYLVVVDDAW 292 (858)
Q Consensus 275 l~~~l~~~~~LlvlDd~~ 292 (858)
+.......-=++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 444333445588899874
No 307
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.25 E-value=0.002 Score=63.03 Aligned_cols=37 Identities=38% Similarity=0.499 Sum_probs=16.3
Q ss_pred cCCccEEEEecccCCC-CCccccCCCCCCCeeEeeccc
Q 037627 750 LPNLECLSLKKSHLKE-DPMPKLEKLPNLTILDLGLKS 786 (858)
Q Consensus 750 l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~ 786 (858)
+|+|++|+|++|++.. .-...+..+++|..|++.+|.
T Consensus 90 ~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 90 APNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 3555555555555431 111223334444455555443
No 308
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.25 E-value=0.02 Score=55.27 Aligned_cols=116 Identities=19% Similarity=0.330 Sum_probs=69.8
Q ss_pred CceeeccccHHHHHHHHhc--CCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHh
Q 037627 176 GNVVGFDDDVSKLLAKLLN--KEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRS 253 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 253 (858)
..++|-+...+.+++--.. .+-...-|.++|.-|+|||+|++++.+ .+....-. -|.+.+.
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~------------- 122 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE------------- 122 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH-------------
Confidence 4688988888888764321 122345789999999999999999988 44444322 2233211
Q ss_pred ccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCC---ChhhHHHHHhhCCC---CCCCcEEEEEeCch
Q 037627 254 FKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAW---QKETWESLKRAFPD---NKNGSRVIITTRIK 320 (858)
Q Consensus 254 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~---~~~~~~~l~~~l~~---~~~gs~ilvTtR~~ 320 (858)
+-.+.-.+.+.++. ..++|.|..||+. ..+.+..++..+.. ..+...++.+|.++
T Consensus 123 ----------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 ----------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred ----------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 00112223333332 3679999999984 33567777777753 23334455555544
No 309
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.23 E-value=0.027 Score=59.98 Aligned_cols=89 Identities=21% Similarity=0.211 Sum_probs=51.0
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCC-CCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQ-DYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHN 277 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 277 (858)
..+++++|+.|+||||++.+++.....+.....+..++... .....+.++...+.++.+... ..+..++...+.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~----~~~~~~l~~~l~~ 212 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA----VKDGGDLQLALAE 212 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe----cCCcccHHHHHHH
Confidence 46999999999999999999987322121123456666433 234455566666666654321 1111223333333
Q ss_pred HhcCceEEEEEEcCCC
Q 037627 278 CLQGKSYLVVVDDAWQ 293 (858)
Q Consensus 278 ~l~~~~~LlvlDd~~~ 293 (858)
+.++ -+|++|.+-.
T Consensus 213 -l~~~-DlVLIDTaG~ 226 (374)
T PRK14722 213 -LRNK-HMVLIDTIGM 226 (374)
T ss_pred -hcCC-CEEEEcCCCC
Confidence 3444 4566999853
No 310
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.21 E-value=0.019 Score=54.33 Aligned_cols=114 Identities=17% Similarity=0.106 Sum_probs=60.9
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCC--CCHHHHHHHHHHhccccccchhhhhccH-HHHHHHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQD--YDTKDLLLRIIRSFKINVLTRELEEMRE-EDLERYL 275 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~-~~~~~~l 275 (858)
..+++|.|+.|.|||||.+.++-. .....+.+++.-... .+..+..+ ..++.-.. .+. +...-.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~q------LS~G~~qrl~l 93 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDARR---AGIAMVYQ------LSVGERQMVEI 93 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHHh---cCeEEEEe------cCHHHHHHHHH
Confidence 459999999999999999999863 223345555532111 11111111 11111100 111 2223345
Q ss_pred HHHhcCceEEEEEEcCCC---hhhHHHHHhhCCCC-CCCcEEEEEeCchhHHh
Q 037627 276 HNCLQGKSYLVVVDDAWQ---KETWESLKRAFPDN-KNGSRVIITTRIKEVAE 324 (858)
Q Consensus 276 ~~~l~~~~~LlvlDd~~~---~~~~~~l~~~l~~~-~~gs~ilvTtR~~~~~~ 324 (858)
.+.+..++-++++|+... ....+.+...+... ..|..||++|.+.....
T Consensus 94 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 94 ARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred HHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 555667788999999753 23333333333221 23566888888776443
No 311
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.024 Score=59.37 Aligned_cols=99 Identities=22% Similarity=0.171 Sum_probs=61.9
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcccccc-chhh
Q 037627 185 VSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVL-TREL 263 (858)
Q Consensus 185 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~~~~ 263 (858)
..++-+.|-.+--...++.|-|.+|||||||..+++. +....- .+++|+-.+... -.+--+..++.... ..-.
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsGEES~~---QiklRA~RL~~~~~~l~l~ 152 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSGEESLQ---QIKLRADRLGLPTNNLYLL 152 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeCCcCHH---HHHHHHHHhCCCccceEEe
Confidence 3455555544423457999999999999999999998 454443 688887655432 12223445553321 1112
Q ss_pred hhccHHHHHHHHHHHhcCceEEEEEEcCC
Q 037627 264 EEMREEDLERYLHNCLQGKSYLVVVDDAW 292 (858)
Q Consensus 264 ~~~~~~~~~~~l~~~l~~~~~LlvlDd~~ 292 (858)
.+.+.+.+.+.+.+ .++-++|+|-+.
T Consensus 153 aEt~~e~I~~~l~~---~~p~lvVIDSIQ 178 (456)
T COG1066 153 AETNLEDIIAELEQ---EKPDLVVIDSIQ 178 (456)
T ss_pred hhcCHHHHHHHHHh---cCCCEEEEeccc
Confidence 33455666666655 678899999874
No 312
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.20 E-value=0.015 Score=62.55 Aligned_cols=99 Identities=21% Similarity=0.178 Sum_probs=53.7
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccc-hhhh
Q 037627 186 SKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLT-RELE 264 (858)
Q Consensus 186 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~ 264 (858)
..+-+.|..+=....++.|.|.+|+|||||+.+++.. ....-..++|++.... ...+ ..-+..++..... .-..
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~ 143 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLA 143 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEc
Confidence 3444444444344679999999999999999999873 3333346888876543 3332 2223344432110 0001
Q ss_pred hccHHHHHHHHHHHhcCceEEEEEEcCC
Q 037627 265 EMREEDLERYLHNCLQGKSYLVVVDDAW 292 (858)
Q Consensus 265 ~~~~~~~~~~l~~~l~~~~~LlvlDd~~ 292 (858)
..+.+.+.+.+. ..+.-+||+|.+.
T Consensus 144 e~~le~I~~~i~---~~~~~lVVIDSIq 168 (372)
T cd01121 144 ETNLEDILASIE---ELKPDLVIIDSIQ 168 (372)
T ss_pred cCcHHHHHHHHH---hcCCcEEEEcchH
Confidence 122334444332 2355677888763
No 313
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.17 E-value=0.021 Score=60.50 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=46.4
Q ss_pred HHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCcccc----CCcceEEEEEeCCCCCHHHHHHHHHHhccc
Q 037627 188 LLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVK----NKFDRCAWVSVSQDYDTKDLLLRIIRSFKI 256 (858)
Q Consensus 188 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 256 (858)
+-+.|.++-+...++-|+|.+|+|||+|+..++...... ..-..++|++....++++++ .++++.++.
T Consensus 112 LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 112 LDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred HHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 334444443557899999999999999999887421211 11136999999998888765 455665543
No 314
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.17 E-value=0.024 Score=56.82 Aligned_cols=50 Identities=22% Similarity=0.338 Sum_probs=33.6
Q ss_pred CCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHH
Q 037627 197 PRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRI 250 (858)
Q Consensus 197 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 250 (858)
+...++.|.|++|+||||+|.+++... .+.. ..+++++... +..++++.+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 345699999999999999997776631 1222 3567777433 455666665
No 315
>PRK04040 adenylate kinase; Provisional
Probab=96.15 E-value=0.015 Score=56.25 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=20.8
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 037627 200 FVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.+|+|+|++|+||||+++.+.+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 316
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.12 E-value=0.0097 Score=53.74 Aligned_cols=44 Identities=30% Similarity=0.465 Sum_probs=33.9
Q ss_pred EEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcccc
Q 037627 201 VISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKIN 257 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 257 (858)
+|.|.|++|+||||+|+.++++ ..-.| .+...++++|++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~--~gl~~-----------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH--LGLKL-----------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH--hCCce-----------eeccHHHHHHHHHcCCC
Confidence 6899999999999999999983 22221 23457889999988765
No 317
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.10 E-value=0.024 Score=55.04 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=31.1
Q ss_pred EEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHH
Q 037627 201 VISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLR 249 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 249 (858)
++.|.|++|+|||+||.+++.. ....=..++|++... +.+.+...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~--~~~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYA--GLARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCC--CHHHHHHH
Confidence 3689999999999999998763 222224578888754 34444444
No 318
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.062 Score=60.61 Aligned_cols=94 Identities=19% Similarity=0.302 Sum_probs=60.0
Q ss_pred ceeeccccHHHHHHHHhcC---------C-CCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHH
Q 037627 177 NVVGFDDDVSKLLAKLLNK---------E-PRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDL 246 (858)
Q Consensus 177 ~~vGr~~~~~~l~~~L~~~---------~-~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 246 (858)
++=|-++-..+|.+-+.-+ + .+..=|.+||++|.|||-+|++|+.+ | ..-|++|-.+
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATE------c-sL~FlSVKGP------ 739 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATE------C-SLNFLSVKGP------ 739 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhh------c-eeeEEeecCH------
Confidence 3446777777777765321 1 22456889999999999999999973 2 1345666544
Q ss_pred HHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh
Q 037627 247 LLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK 294 (858)
Q Consensus 247 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~ 294 (858)
+++..--++ +++.+.+.+.+.-...+++|.||++++.
T Consensus 740 --ELLNMYVGq---------SE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 --ELLNMYVGQ---------SEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred --HHHHHHhcc---------hHHHHHHHHHHhhccCCeEEEecccccc
Confidence 222222111 2344455555555678999999999863
No 319
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.07 E-value=0.049 Score=51.06 Aligned_cols=119 Identities=19% Similarity=0.121 Sum_probs=63.9
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEE---EEEeCCCCCHHHHHHHHHHhccccc---------cchhhhhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCA---WVSVSQDYDTKDLLLRIIRSFKINV---------LTRELEEM 266 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~---wv~~~~~~~~~~~~~~i~~~l~~~~---------~~~~~~~~ 266 (858)
...|-|++..|.||||.|...+. +...+=-.+. |+.-........++..+ .+.... .....+..
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHH
Confidence 35788888899999999988876 3322222232 22222222333333332 111100 00000111
Q ss_pred cHHHHHHHHHHHhcCc-eEEEEEEcCCCh-----hhHHHHHhhCCCCCCCcEEEEEeCchh
Q 037627 267 REEDLERYLHNCLQGK-SYLVVVDDAWQK-----ETWESLKRAFPDNKNGSRVIITTRIKE 321 (858)
Q Consensus 267 ~~~~~~~~l~~~l~~~-~~LlvlDd~~~~-----~~~~~l~~~l~~~~~gs~ilvTtR~~~ 321 (858)
......+..++.+... -=++|||++-.. -..+++...+...+.+..||+|.|+..
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 1223344444555444 459999998522 234566666666677788999999873
No 320
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.07 E-value=0.0049 Score=55.60 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=20.8
Q ss_pred EEEEEEecCcchHHHHHHHHhcC
Q 037627 200 FVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
--+.|+|++|+||||+++.+++.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHH
Confidence 46899999999999999999973
No 321
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.06 E-value=0.19 Score=52.83 Aligned_cols=48 Identities=17% Similarity=0.036 Sum_probs=35.1
Q ss_pred eeecCCCChhHHHHHHHHHhcCCCCCC-hhHHHHHHHHHHHcCCChHHH
Q 037627 332 AHKLRFLRSDESWELFCEKAFRKSNGS-EGLEKLGREMVEKCRGLPLAI 379 (858)
Q Consensus 332 ~~~l~~L~~~e~~~l~~~~~~~~~~~~-~~~~~~~~~I~~~~~G~Plai 379 (858)
++++++++.+|+..++.......-... ...+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988775554432 233445667777779999643
No 322
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=96.05 E-value=0.065 Score=60.94 Aligned_cols=47 Identities=15% Similarity=0.113 Sum_probs=37.0
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 175 EGNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
-+.++|....++++.+.+........-|.|+|..|+||+++|+.+..
T Consensus 203 f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 203 FSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred ccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHH
Confidence 34699999988888877754322344688999999999999999865
No 323
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.089 Score=50.99 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=35.1
Q ss_pred CceeeccccHHHHHHHHhcC-----------CCCcEEEEEEecCcchHHHHHHHHhcC
Q 037627 176 GNVVGFDDDVSKLLAKLLNK-----------EPRRFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
.++=|.+...+++.+...-+ -..++-|.++|++|.|||-||++++++
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 34556777777777765321 134677899999999999999999983
No 324
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.03 E-value=0.0058 Score=66.55 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=37.7
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..++||++.++.+...+..+. .|.|.|++|+|||++|+.+..
T Consensus 20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHH
Confidence 458999999999998887665 799999999999999999997
No 325
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.03 E-value=0.021 Score=53.94 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=31.3
Q ss_pred EEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHH
Q 037627 202 ISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRII 251 (858)
Q Consensus 202 v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 251 (858)
+.|.|.+|+|||++|.+++.. ....++++.-.+.++. +....|.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~ 45 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIA 45 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHH
Confidence 679999999999999999863 2235777776666654 3444443
No 326
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.01 E-value=0.025 Score=55.18 Aligned_cols=110 Identities=18% Similarity=0.168 Sum_probs=54.8
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNC 278 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 278 (858)
.+++.|.|++|+||||+++.+... ....-..++++. .. ......+....+.... ............
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~--~~~~g~~v~~~a-pT----~~Aa~~L~~~~~~~a~-------Ti~~~l~~~~~~ 83 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEA--LEAAGKRVIGLA-PT----NKAAKELREKTGIEAQ-------TIHSFLYRIPNG 83 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHH--HHHTT--EEEEE-SS----HHHHHHHHHHHTS-EE-------EHHHHTTEECCE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHH--HHhCCCeEEEEC-Cc----HHHHHHHHHhhCcchh-------hHHHHHhcCCcc
Confidence 468999999999999999998762 222212233332 22 2223333333332211 000000000000
Q ss_pred -h-----cCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCchhHHh
Q 037627 279 -L-----QGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRIKEVAE 324 (858)
Q Consensus 279 -l-----~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~~~~ 324 (858)
. ..+.-+||+|++.-. ..+..+...... .|.++|+.--..+...
T Consensus 84 ~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~QL~p 135 (196)
T PF13604_consen 84 DDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQLPP 135 (196)
T ss_dssp ECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTSHHH
T ss_pred cccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcchhcC
Confidence 0 123459999999744 466777766654 4678888876554443
No 327
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.01 E-value=0.003 Score=36.68 Aligned_cols=21 Identities=38% Similarity=0.729 Sum_probs=13.2
Q ss_pred ccceEeccCCcccccCccccc
Q 037627 591 NLKYLRLTNAHIDVIPSCIAK 611 (858)
Q Consensus 591 ~L~~L~L~~n~i~~lp~~l~~ 611 (858)
+|++|+|++|+++.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466677777766666665543
No 328
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.052 Score=61.79 Aligned_cols=153 Identities=16% Similarity=0.155 Sum_probs=85.1
Q ss_pred CCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHH
Q 037627 197 PRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLH 276 (858)
Q Consensus 197 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 276 (858)
...+.+.++|++|.|||.||++++. ..+.+| +.+... .+.....+ .....+.+.+.
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~f-----i~v~~~--------~l~sk~vG---------esek~ir~~F~ 329 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRF-----ISVKGS--------ELLSKWVG---------ESEKNIRELFE 329 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCeE-----EEeeCH--------HHhccccc---------hHHHHHHHHHH
Confidence 3456899999999999999999998 444444 222211 11111111 01233444444
Q ss_pred HHhcCceEEEEEEcCCCh-------------hhHHHHHhhCCCC--CCCcEEEEEeCchhHHh-hcC---CCCceeecCC
Q 037627 277 NCLQGKSYLVVVDDAWQK-------------ETWESLKRAFPDN--KNGSRVIITTRIKEVAE-RSD---ENAYAHKLRF 337 (858)
Q Consensus 277 ~~l~~~~~LlvlDd~~~~-------------~~~~~l~~~l~~~--~~gs~ilvTtR~~~~~~-~~~---~~~~~~~l~~ 337 (858)
..-+..+..|.+|+++.. ....+++..+... ..+..||-||-.+.... ... .....+.+.+
T Consensus 330 ~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~ 409 (494)
T COG0464 330 KARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPL 409 (494)
T ss_pred HHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCC
Confidence 444678999999999743 1234444445422 23333444554443222 111 1125788889
Q ss_pred CChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCC
Q 037627 338 LRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRG 374 (858)
Q Consensus 338 L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G 374 (858)
-+.++..+.|..+....... -...-..+.+++.+.|
T Consensus 410 pd~~~r~~i~~~~~~~~~~~-~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 410 PDLEERLEIFKIHLRDKKPP-LAEDVDLEELAEITEG 445 (494)
T ss_pred CCHHHHHHHHHHHhcccCCc-chhhhhHHHHHHHhcC
Confidence 99999999999887643321 0112233455555555
No 329
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.99 E-value=0.054 Score=51.57 Aligned_cols=120 Identities=18% Similarity=0.080 Sum_probs=64.9
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCC---CCCHHHHHHHHHHhcc-----cc----ccchhhhhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQ---DYDTKDLLLRIIRSFK-----IN----VLTRELEEM 266 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l~-----~~----~~~~~~~~~ 266 (858)
...|.|+|..|-||||.|...+. +...+=-.+..+-.-. ......++..+ ..+. .. ......+..
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l-~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFG-GGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcC-CCcEEEECCCCCcccCCCcHHHHH
Confidence 46899999999999999988876 3322222333333322 22333333321 0000 00 000001111
Q ss_pred cHHHHHHHHHHHhcC-ceEEEEEEcCCCh-----hhHHHHHhhCCCCCCCcEEEEEeCchh
Q 037627 267 REEDLERYLHNCLQG-KSYLVVVDDAWQK-----ETWESLKRAFPDNKNGSRVIITTRIKE 321 (858)
Q Consensus 267 ~~~~~~~~l~~~l~~-~~~LlvlDd~~~~-----~~~~~l~~~l~~~~~gs~ilvTtR~~~ 321 (858)
......+..++.+.. +-=++|||++-.. -..+++...+...+.+..||+|-|+..
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 122334444455544 4459999998532 245666666766677889999999873
No 330
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.98 E-value=0.028 Score=53.76 Aligned_cols=121 Identities=18% Similarity=0.173 Sum_probs=61.7
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccc--ccc---ch-hh-hh--ccH-
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKI--NVL---TR-EL-EE--MRE- 268 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~--~~~---~~-~~-~~--~~~- 268 (858)
..+++|+|+.|.|||||++.++... ....+.+++.-....... ..+...++. +.+ .. .. +. .+.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 4699999999999999999998631 223444554321110000 111111111 000 00 00 00 111
Q ss_pred HHHHHHHHHHhcCceEEEEEEcCCCh---hhHHHHHhhCCCC-CCCcEEEEEeCchhHHhh
Q 037627 269 EDLERYLHNCLQGKSYLVVVDDAWQK---ETWESLKRAFPDN-KNGSRVIITTRIKEVAER 325 (858)
Q Consensus 269 ~~~~~~l~~~l~~~~~LlvlDd~~~~---~~~~~l~~~l~~~-~~gs~ilvTtR~~~~~~~ 325 (858)
+...-.+.+.+..++-++++|+.... ...+.+...+... ..|..||++|.+......
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 22233456667788889999997532 2223333333221 125668888887765543
No 331
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.98 E-value=0.058 Score=51.13 Aligned_cols=113 Identities=19% Similarity=0.109 Sum_probs=57.6
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEE-------EeCCCC--CHHHHHHHHHHhccccccchhhhhcc-H
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWV-------SVSQDY--DTKDLLLRIIRSFKINVLTRELEEMR-E 268 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv-------~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~-~ 268 (858)
..+++|.|+.|.|||||++.++..... ..+.+++ .+.+.. ....+...+... .. ...+ -
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~--~~------~~LS~G 95 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPW---GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP--WD------DVLSGG 95 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCCceEEEECCCCccccccHHHHhhcc--CC------CCCCHH
Confidence 459999999999999999999873211 1122211 112211 111222222110 00 1111 1
Q ss_pred HHHHHHHHHHhcCceEEEEEEcCCC---hhhHHHHHhhCCCCCCCcEEEEEeCchhHHh
Q 037627 269 EDLERYLHNCLQGKSYLVVVDDAWQ---KETWESLKRAFPDNKNGSRVIITTRIKEVAE 324 (858)
Q Consensus 269 ~~~~~~l~~~l~~~~~LlvlDd~~~---~~~~~~l~~~l~~~~~gs~ilvTtR~~~~~~ 324 (858)
+...-.+.+.+..++=++++|+-.. ....+.+...+... +..||++|.+.....
T Consensus 96 ~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 96 EQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 2233345555667788899999753 22333333333222 345888887766543
No 332
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.98 E-value=0.064 Score=57.75 Aligned_cols=102 Identities=20% Similarity=0.164 Sum_probs=57.7
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCcccc--CCcceEEEEEeCCCC-CHHHHHHHHHHhccccccchhhhhccHHHHHHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVK--NKFDRCAWVSVSQDY-DTKDLLLRIIRSFKINVLTRELEEMREEDLERY 274 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~--~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 274 (858)
..+++.++|+.|+||||.+..++...... .+-..+..++..... .....+...++.++.+.. .....+.+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~----~~~~~~~l~~~ 248 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK----AIESFKDLKEE 248 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE----eeCcHHHHHHH
Confidence 45799999999999999999888632221 112345556655322 233345555665655422 11123444444
Q ss_pred HHHHhcCceEEEEEEcCCCh----hhHHHHHhhCC
Q 037627 275 LHNCLQGKSYLVVVDDAWQK----ETWESLKRAFP 305 (858)
Q Consensus 275 l~~~l~~~~~LlvlDd~~~~----~~~~~l~~~l~ 305 (858)
+.+. ...-+|++|.+... ..+.++...+.
T Consensus 249 L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~ 281 (388)
T PRK12723 249 ITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLN 281 (388)
T ss_pred HHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHH
Confidence 4443 34568999998532 23445544444
No 333
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.98 E-value=0.021 Score=59.16 Aligned_cols=88 Identities=20% Similarity=0.240 Sum_probs=46.7
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCC-CHHHHHHHHHHhccccccchhhhhccHHHHHHHHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDY-DTKDLLLRIIRSFKINVLTRELEEMREEDLERYLH 276 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 276 (858)
..++++|+|++|+||||++..++.....+..-..+..++..... ...+.+....+.++.+.. ...+...+...+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~----~~~~~~~l~~~l~ 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK----VARDPKELRKALD 268 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee----ccCCHHHHHHHHH
Confidence 45799999999999999999998732222111245666654322 122333333333333221 1112334444444
Q ss_pred HHhcCceEEEEEEcC
Q 037627 277 NCLQGKSYLVVVDDA 291 (858)
Q Consensus 277 ~~l~~~~~LlvlDd~ 291 (858)
.. .+ .=+|++|..
T Consensus 269 ~~-~~-~d~vliDt~ 281 (282)
T TIGR03499 269 RL-RD-KDLILIDTA 281 (282)
T ss_pred Hc-cC-CCEEEEeCC
Confidence 33 33 347777754
No 334
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.96 E-value=0.034 Score=53.10 Aligned_cols=120 Identities=17% Similarity=0.182 Sum_probs=60.0
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCC--CCCHHHHHHHHHHhcccc--cc---chhhhh--ccH-
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQ--DYDTKDLLLRIIRSFKIN--VL---TRELEE--MRE- 268 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~--~~---~~~~~~--~~~- 268 (858)
..+++|.|+.|.|||||.+.++.- . ....+.+++.-.. ....... + ..++.- .+ .....+ .+.
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~--~-~~~~G~i~~~g~~~~~~~~~~~-~---~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRL--Y-DPTSGEILIDGVDLRDLDLESL-R---KNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC--C-CCCCCEEEECCEEhhhcCHHHH-H---hhEEEEcCCchhccchHHHHhhCHH
Confidence 469999999999999999999863 2 2233444432211 0111111 1 111110 00 000000 111
Q ss_pred HHHHHHHHHHhcCceEEEEEEcCCC---hhhHHHHHhhCCCCCCCcEEEEEeCchhHHhh
Q 037627 269 EDLERYLHNCLQGKSYLVVVDDAWQ---KETWESLKRAFPDNKNGSRVIITTRIKEVAER 325 (858)
Q Consensus 269 ~~~~~~l~~~l~~~~~LlvlDd~~~---~~~~~~l~~~l~~~~~gs~ilvTtR~~~~~~~ 325 (858)
+...-.+.+.+..++-++++|+-.. ....+.+...+.....+..||++|.+......
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 1222335555667788999999753 22233333333222224668888887766543
No 335
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.96 E-value=0.01 Score=59.76 Aligned_cols=96 Identities=25% Similarity=0.281 Sum_probs=53.4
Q ss_pred HHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCC-cceEEEEEeCCCCCHHHHHHHHHHhcccccc----------
Q 037627 191 KLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNK-FDRCAWVSVSQDYDTKDLLLRIIRSFKINVL---------- 259 (858)
Q Consensus 191 ~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------- 259 (858)
.|.++=+...++.|.|.+|+|||+|+.+++.. .... =+.++|++...+ ++.+.+.+ .+++....
T Consensus 11 ~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~--~~~~~ge~vlyvs~ee~--~~~l~~~~-~s~g~d~~~~~~~g~l~~ 85 (226)
T PF06745_consen 11 LLGGGIPKGSVVLISGPPGSGKTTLALQFLYN--GLKNFGEKVLYVSFEEP--PEELIENM-KSFGWDLEEYEDSGKLKI 85 (226)
T ss_dssp HTTTSEETTSEEEEEESTTSSHHHHHHHHHHH--HHHHHT--EEEEESSS---HHHHHHHH-HTTTS-HHHHHHTTSEEE
T ss_pred hhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHH--hhhhcCCcEEEEEecCC--HHHHHHHH-HHcCCcHHHHhhcCCEEE
Confidence 33333345679999999999999999998763 2222 246888887654 34444443 34443211
Q ss_pred ---chhhh---hccHHHHHHHHHHHhcC-ceEEEEEEcC
Q 037627 260 ---TRELE---EMREEDLERYLHNCLQG-KSYLVVVDDA 291 (858)
Q Consensus 260 ---~~~~~---~~~~~~~~~~l~~~l~~-~~~LlvlDd~ 291 (858)
..... ..+.+.+...+.+.++. +...+|+|.+
T Consensus 86 ~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 86 IDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp EESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred EecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 00000 23445555555555433 3467778875
No 336
>PRK04328 hypothetical protein; Provisional
Probab=95.95 E-value=0.024 Score=57.77 Aligned_cols=63 Identities=21% Similarity=0.269 Sum_probs=41.1
Q ss_pred HHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccc
Q 037627 189 LAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKI 256 (858)
Q Consensus 189 ~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 256 (858)
-+.|.++=+...++.|.|.+|+|||+||.+++.. ....-..++|++.... +..+ .+.+++++.
T Consensus 13 D~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee~--~~~i-~~~~~~~g~ 75 (249)
T PRK04328 13 DEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEEH--PVQV-RRNMRQFGW 75 (249)
T ss_pred HHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeCC--HHHH-HHHHHHcCC
Confidence 3334344345789999999999999999998763 2222356889888663 3443 333444443
No 337
>PRK05973 replicative DNA helicase; Provisional
Probab=95.93 E-value=0.035 Score=55.26 Aligned_cols=56 Identities=16% Similarity=0.125 Sum_probs=37.9
Q ss_pred HhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHH
Q 037627 192 LLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRII 251 (858)
Q Consensus 192 L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 251 (858)
+.++=....++.|.|.+|+|||++|.+++.. ...+-..+++++.... ..++..++.
T Consensus 57 l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~--~a~~Ge~vlyfSlEes--~~~i~~R~~ 112 (237)
T PRK05973 57 LFSQLKPGDLVLLGARPGHGKTLLGLELAVE--AMKSGRTGVFFTLEYT--EQDVRDRLR 112 (237)
T ss_pred hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEEeCC--HHHHHHHHH
Confidence 3333345669999999999999999998763 2222345778877654 455555543
No 338
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.93 E-value=0.072 Score=56.32 Aligned_cols=101 Identities=14% Similarity=0.173 Sum_probs=59.9
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCC-CHHHHHHHHHHhccccccchhhhhccHHHHHHHHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDY-DTKDLLLRIIRSFKINVLTRELEEMREEDLERYLH 276 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 276 (858)
+.++++|+|+.|+||||++..++.. ....-..+.+++..... ...+.++..++.++.+.. ...+..++...+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~----~~~dp~dL~~al~ 278 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI----VATSPAELEEAVQ 278 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE----ecCCHHHHHHHHH
Confidence 4689999999999999999999873 22222356677765432 234556666666654322 1123455555554
Q ss_pred HHhc-CceEEEEEEcCCC----hhhHHHHHhhC
Q 037627 277 NCLQ-GKSYLVVVDDAWQ----KETWESLKRAF 304 (858)
Q Consensus 277 ~~l~-~~~~LlvlDd~~~----~~~~~~l~~~l 304 (858)
..-. +..=+|++|-+-. .+..+++....
T Consensus 279 ~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~ 311 (407)
T PRK12726 279 YMTYVNCVDHILIDTVGRNYLAEESVSEISAYT 311 (407)
T ss_pred HHHhcCCCCEEEEECCCCCccCHHHHHHHHHHh
Confidence 4321 3446888998854 23344544433
No 339
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.92 E-value=0.021 Score=54.91 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=21.2
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|.|+.|.|||||++.++.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45999999999999999999986
No 340
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.08 Score=51.71 Aligned_cols=52 Identities=25% Similarity=0.273 Sum_probs=38.3
Q ss_pred CceeeccccHHHHHHHHhcC-----------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCc
Q 037627 176 GNVVGFDDDVSKLLAKLLNK-----------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKF 229 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f 229 (858)
+++=|-.+.++++.+...-+ -...+-|.++|++|.|||-+|+++++ +....|
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf 239 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF 239 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE
Confidence 44556788888887765432 12456788999999999999999998 555444
No 341
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.90 E-value=0.038 Score=53.95 Aligned_cols=83 Identities=23% Similarity=0.203 Sum_probs=44.3
Q ss_pred EEEEEecCcchHHHHHHHHhcCccccCC-cc---eEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHH
Q 037627 201 VISVYGMGGLGKTTLARKLYHNNDVKNK-FD---RCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLH 276 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~~~~~~~~-f~---~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 276 (858)
||+|.|++|+||||+|+.+.. ..... .. ....++....+........ -...............+.+.+.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH--HhCccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 699999999999999999987 33322 22 2344444333322222221 11111111111224456677777777
Q ss_pred HHhcCceEEE
Q 037627 277 NCLQGKSYLV 286 (858)
Q Consensus 277 ~~l~~~~~Ll 286 (858)
...+++.+-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7666665443
No 342
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.90 E-value=0.032 Score=53.21 Aligned_cols=102 Identities=18% Similarity=0.089 Sum_probs=55.3
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEe------CCCCCHHHHHHHHHHhccccccchhhhhccHHHHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSV------SQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLE 272 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~------~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 272 (858)
..+++|.|+.|+|||||++.++.-. ....+.+++.. .+... +. .-+...
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~q~~~-----------LS-----------gGq~qr 79 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGITPVYKPQYID-----------LS-----------GGELQR 79 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEEEEEEcccCC-----------CC-----------HHHHHH
Confidence 4599999999999999999998631 12223333211 11110 10 011223
Q ss_pred HHHHHHhcCceEEEEEEcCCC---hhhHHHHHhhCCC--CCCCcEEEEEeCchhHHhh
Q 037627 273 RYLHNCLQGKSYLVVVDDAWQ---KETWESLKRAFPD--NKNGSRVIITTRIKEVAER 325 (858)
Q Consensus 273 ~~l~~~l~~~~~LlvlDd~~~---~~~~~~l~~~l~~--~~~gs~ilvTtR~~~~~~~ 325 (858)
-.+.+.+..++-++++|+.-. ....+.+...+.. ...+..||++|.+......
T Consensus 80 v~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 80 VAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 334555667788999999753 2222333333221 1122457777777655543
No 343
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.89 E-value=0.044 Score=59.39 Aligned_cols=47 Identities=28% Similarity=0.350 Sum_probs=36.2
Q ss_pred CCceeeccccHHHHHHHHhc---------CCC-------CcEEEEEEecCcchHHHHHHHHhc
Q 037627 175 EGNVVGFDDDVSKLLAKLLN---------KEP-------RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~---------~~~-------~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
+..+||.++.++.+...+.. ... ....+.++|++|+|||++|+.++.
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 45689999999988766521 110 135799999999999999999996
No 344
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.87 E-value=0.16 Score=55.24 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=32.8
Q ss_pred cccHHHHHHHHh-----cCCCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 182 DDDVSKLLAKLL-----NKEPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 182 ~~~~~~l~~~L~-----~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.+-+.++..||. .+.-+.+++.|+|++|+||||-++.++.
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLsk 132 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSK 132 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHH
Confidence 455677777877 4455678999999999999999999986
No 345
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.84 E-value=0.048 Score=59.53 Aligned_cols=59 Identities=22% Similarity=0.140 Sum_probs=34.2
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCC-CHHHHHHHHHHhcccc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDY-DTKDLLLRIIRSFKIN 257 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~ 257 (858)
.+.++.++|++|+||||.|..++.....+..+ .++-+++.... ...+.+.......+.+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp 157 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVP 157 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCc
Confidence 36799999999999999999888732111222 34445544221 1233344444544433
No 346
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.84 E-value=0.011 Score=58.53 Aligned_cols=64 Identities=28% Similarity=0.325 Sum_probs=39.3
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHH
Q 037627 184 DVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLL 247 (858)
Q Consensus 184 ~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 247 (858)
+..++++.+....++..+|+|+|+||+|||||..++....+.+.+--.++-|+=+.+++--.++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccc
Confidence 4556677776665678899999999999999999998743333332345555555566544443
No 347
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.83 E-value=0.016 Score=61.92 Aligned_cols=76 Identities=22% Similarity=0.340 Sum_probs=48.7
Q ss_pred CceeeccccHHHHHHHHhcC------------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCc---ceEEEEEeC-C
Q 037627 176 GNVVGFDDDVSKLLAKLLNK------------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKF---DRCAWVSVS-Q 239 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f---~~~~wv~~~-~ 239 (858)
..+||.++.++.+.-++... ....+.|.++|++|+|||++|+.++. .....| +...+...+ .
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~--~l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH--HhCCeEEEeecceeecCCcc
Confidence 56889888888887666532 11246799999999999999999998 444444 222222211 2
Q ss_pred CCCHHHHHHHHHHh
Q 037627 240 DYDTKDLLLRIIRS 253 (858)
Q Consensus 240 ~~~~~~~~~~i~~~ 253 (858)
..+.+.+++.+...
T Consensus 90 G~dvE~i~r~l~e~ 103 (441)
T TIGR00390 90 GRDVESMVRDLTDA 103 (441)
T ss_pred cCCHHHHHHHHHHH
Confidence 23555666655543
No 348
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.83 E-value=0.041 Score=59.06 Aligned_cols=23 Identities=43% Similarity=0.395 Sum_probs=21.2
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|+|++|+||||++..++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999986
No 349
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.82 E-value=0.039 Score=56.50 Aligned_cols=45 Identities=18% Similarity=0.277 Sum_probs=33.0
Q ss_pred cCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCC
Q 037627 194 NKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQD 240 (858)
Q Consensus 194 ~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 240 (858)
++=+...++.|+|++|+|||++|.+++.. ....-..+++++...+
T Consensus 31 GGip~gs~~lI~G~pGtGKT~l~~qf~~~--~a~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 31 GGIPAYSVINITGVSDTGKSLMVEQFAVT--QASRGNPVLFVTVESP 75 (259)
T ss_pred CCeECCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecCC
Confidence 33345689999999999999999998763 2222346888888643
No 350
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.82 E-value=0.029 Score=56.46 Aligned_cols=26 Identities=38% Similarity=0.511 Sum_probs=23.5
Q ss_pred CCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 196 EPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 196 ~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.+...+++|.|+.|+|||||++.++.
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999999987
No 351
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.82 E-value=0.0096 Score=56.45 Aligned_cols=40 Identities=23% Similarity=0.207 Sum_probs=29.9
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCcccc-CCcceEEEEEeCCC
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVK-NKFDRCAWVSVSQD 240 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~ 240 (858)
..++.+.|+.|+|||.||+.+++ .+. ......+-++.+.-
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcc
Confidence 46889999999999999999998 444 34445666666543
No 352
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.81 E-value=0.065 Score=51.28 Aligned_cols=124 Identities=17% Similarity=0.203 Sum_probs=67.8
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCC-------------------C------------------
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQD-------------------Y------------------ 241 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-------------------~------------------ 241 (858)
..|++|.|+.|+|||||.+.+-. ....-.+.+|+.-... |
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~---LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNG---LEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC---CcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 45999999999999999999874 2222234555533111 1
Q ss_pred -------CHHHHHHHHHHhcccccc----chhhhhccHHHHHHHHHHHhcCceEEEEEEcCCC---hhhHHHHHhhCCC-
Q 037627 242 -------DTKDLLLRIIRSFKINVL----TRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQ---KETWESLKRAFPD- 306 (858)
Q Consensus 242 -------~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~---~~~~~~l~~~l~~- 306 (858)
.+++...+++..++.... |...+ .-++-.-.|.+.|.=++-++.||+..+ ++...+++..+..
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLS--GGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~L 182 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLS--GGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL 182 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccC--cHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHH
Confidence 122233333444433221 11111 122334456677778888999999864 4444444333321
Q ss_pred CCCCcEEEEEeCchhHHhhcC
Q 037627 307 NKNGSRVIITTRIKEVAERSD 327 (858)
Q Consensus 307 ~~~gs~ilvTtR~~~~~~~~~ 327 (858)
...|-..|+.|..-..+....
T Consensus 183 A~eGmTMivVTHEM~FAr~Va 203 (240)
T COG1126 183 AEEGMTMIIVTHEMGFAREVA 203 (240)
T ss_pred HHcCCeEEEEechhHHHHHhh
Confidence 223555677776665555443
No 353
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.80 E-value=0.076 Score=58.33 Aligned_cols=88 Identities=19% Similarity=0.192 Sum_probs=47.7
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCC-HHHHHHHHHHhccccccchhhhhccHHHHHHHHHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYD-TKDLLLRIIRSFKINVLTRELEEMREEDLERYLHN 277 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 277 (858)
.++++++|++|+||||++..++........-..+..++...... ..+.+....+.++.+.. ...+.+.+...+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~----~~~~~~~l~~~l~~ 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE----VVYDPKELAKALEQ 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE----ccCCHHhHHHHHHH
Confidence 46999999999999999988876322012223566676643211 12223333344443321 11123344444444
Q ss_pred HhcCceEEEEEEcCC
Q 037627 278 CLQGKSYLVVVDDAW 292 (858)
Q Consensus 278 ~l~~~~~LlvlDd~~ 292 (858)
. . ..=+|++|..-
T Consensus 297 ~-~-~~DlVlIDt~G 309 (424)
T PRK05703 297 L-R-DCDVILIDTAG 309 (424)
T ss_pred h-C-CCCEEEEeCCC
Confidence 2 2 34688899763
No 354
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.026 Score=56.89 Aligned_cols=82 Identities=13% Similarity=0.267 Sum_probs=48.4
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCcccc--CCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVK--NKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLH 276 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 276 (858)
-|+|.++|++|.|||+|.+++++...++ ..|....-+.++. ..++.+-..+- ......+.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsES----------gKlV~kmF~kI~ 242 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSES----------GKLVAKMFQKIQ 242 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhhh----------hhHHHHHHHHHH
Confidence 4899999999999999999999964433 3343333333321 22222222221 122345555666
Q ss_pred HHhcCc--eEEEEEEcCCCh
Q 037627 277 NCLQGK--SYLVVVDDAWQK 294 (858)
Q Consensus 277 ~~l~~~--~~LlvlDd~~~~ 294 (858)
+.+..+ =+.+.+|+|++.
T Consensus 243 ELv~d~~~lVfvLIDEVESL 262 (423)
T KOG0744|consen 243 ELVEDRGNLVFVLIDEVESL 262 (423)
T ss_pred HHHhCCCcEEEEEeHHHHHH
Confidence 666544 456678998753
No 355
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.75 E-value=0.026 Score=56.18 Aligned_cols=125 Identities=18% Similarity=0.286 Sum_probs=68.6
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCcc-----cc---C---Cc---ceEEEEEe----CCCC--CH---------------
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNND-----VK---N---KF---DRCAWVSV----SQDY--DT--------------- 243 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~-----~~---~---~f---~~~~wv~~----~~~~--~~--------------- 243 (858)
...++|+|+.|.|||||.+.+.--.. +. . .. ..+.||.= ...+ +.
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 46999999999999999999976110 00 0 00 23444421 1111 11
Q ss_pred -------HHHHHHHHHhcccccc-chhhhhccHHHH-HHHHHHHhcCceEEEEEEcCCC------hhhHHHHHhhCCCCC
Q 037627 244 -------KDLLLRIIRSFKINVL-TRELEEMREEDL-ERYLHNCLQGKSYLVVVDDAWQ------KETWESLKRAFPDNK 308 (858)
Q Consensus 244 -------~~~~~~i~~~l~~~~~-~~~~~~~~~~~~-~~~l~~~l~~~~~LlvlDd~~~------~~~~~~l~~~l~~~~ 308 (858)
.+...+.++.++.... .....+.+-.+. .-.+.+.|..++=|++||+--. ...+-++...+...
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e- 188 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE- 188 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 1333444444443321 111222222232 3456677889999999998532 12344455555543
Q ss_pred CCcEEEEEeCchhHHhh
Q 037627 309 NGSRVIITTRIKEVAER 325 (858)
Q Consensus 309 ~gs~ilvTtR~~~~~~~ 325 (858)
|..||++|-+-.....
T Consensus 189 -g~tIl~vtHDL~~v~~ 204 (254)
T COG1121 189 -GKTVLMVTHDLGLVMA 204 (254)
T ss_pred -CCEEEEEeCCcHHhHh
Confidence 7779999987755443
No 356
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=95.75 E-value=0.032 Score=55.71 Aligned_cols=78 Identities=19% Similarity=0.272 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-hhccCCChHHHHHHHHHHHhhhhhHHHHhhhhc
Q 037627 4 AVVSFVVQRLGDYLIQEAAFLGEVRTEVRSLKKELEWMLCFIKDA-EDKQVDDPMIRQWVSDIRDVAHDIEDVLYNFTL 81 (858)
Q Consensus 4 ~~~~~~~~kl~~~l~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~~-~~~~~~~~~~~~wl~~~~~~~~d~ed~ld~~~~ 81 (858)
+-|..++++|-++.......+..++.+++-++.+++++|.||+.. ++.....+....+..++...||++|+++|-+..
T Consensus 296 GyVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi~ 374 (402)
T PF12061_consen 296 GYVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACIS 374 (402)
T ss_pred cHHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhhc
Confidence 345667777777777777778899999999999999999999988 443444344899999999999999999999843
No 357
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.74 E-value=0.039 Score=57.35 Aligned_cols=90 Identities=23% Similarity=0.332 Sum_probs=51.9
Q ss_pred CCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhh-hhccHHHHHHHH
Q 037627 197 PRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTREL-EEMREEDLERYL 275 (858)
Q Consensus 197 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~~l 275 (858)
+..+++-|+|+.|+||||||..+.. .....-..++|++....+++. .+..++.+...--. .....++..+.+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHH
Confidence 4567999999999999999999987 343344569999998877663 33444443210000 001223444445
Q ss_pred HHHhc-CceEEEEEEcCCC
Q 037627 276 HNCLQ-GKSYLVVVDDAWQ 293 (858)
Q Consensus 276 ~~~l~-~~~~LlvlDd~~~ 293 (858)
.+.++ +.--++|+|-|-.
T Consensus 124 e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT
T ss_pred HHHhhcccccEEEEecCcc
Confidence 55554 3445889998754
No 358
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.74 E-value=0.038 Score=61.97 Aligned_cols=56 Identities=20% Similarity=0.348 Sum_probs=40.7
Q ss_pred ceeeccccHHHHHHHHhcC---CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEE
Q 037627 177 NVVGFDDDVSKLLAKLLNK---EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVS 236 (858)
Q Consensus 177 ~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~ 236 (858)
+++.-.+-++++..||... ....+++.++|++|+||||.++.++++ . .|+.+-|.+
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~e--l--g~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKE--L--GFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHH--h--CCeeEEecC
Confidence 3444556777888888653 334679999999999999999999973 2 355556753
No 359
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.73 E-value=0.079 Score=54.99 Aligned_cols=53 Identities=19% Similarity=0.159 Sum_probs=37.4
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHh
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRS 253 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 253 (858)
...++.|.|.+|+||||++.+++.... ..+-..++|+++.. +..++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 356899999999999999999987321 22134688988865 345666665544
No 360
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.73 E-value=0.034 Score=56.99 Aligned_cols=109 Identities=24% Similarity=0.274 Sum_probs=58.6
Q ss_pred eeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccc
Q 037627 179 VGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINV 258 (858)
Q Consensus 179 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 258 (858)
.|...+..+.+..+.... ..++.|.|+.|.||||++..+... +...-..++.+.....+.... + .++...
T Consensus 62 lg~~~~~~~~l~~~~~~~--~GlilisG~tGSGKTT~l~all~~--i~~~~~~iitiEdp~E~~~~~----~-~q~~v~- 131 (264)
T cd01129 62 LGLKPENLEIFRKLLEKP--HGIILVTGPTGSGKTTTLYSALSE--LNTPEKNIITVEDPVEYQIPG----I-NQVQVN- 131 (264)
T ss_pred cCCCHHHHHHHHHHHhcC--CCEEEEECCCCCcHHHHHHHHHhh--hCCCCCeEEEECCCceecCCC----c-eEEEeC-
Confidence 344444433333333322 458999999999999999988763 222112233332221111110 0 011100
Q ss_pred cchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChhhHHHHHhh
Q 037627 259 LTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKETWESLKRA 303 (858)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~l~~~ 303 (858)
........+.++..++..+=.|+++++.+.+....+...
T Consensus 132 ------~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~a 170 (264)
T cd01129 132 ------EKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQA 170 (264)
T ss_pred ------CcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHH
Confidence 000113455667777888899999999988765554444
No 361
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.72 E-value=0.096 Score=65.60 Aligned_cols=25 Identities=32% Similarity=0.294 Sum_probs=22.3
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcC
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
.++=|.++|++|+|||.||++++.+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHh
Confidence 3567899999999999999999984
No 362
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.71 E-value=0.0095 Score=54.80 Aligned_cols=36 Identities=36% Similarity=0.421 Sum_probs=27.1
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEE
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVS 236 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~ 236 (858)
..+|.|+|.+|+||||||+++.+ +....-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 46899999999999999999998 4444444566664
No 363
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.71 E-value=0.085 Score=52.15 Aligned_cols=25 Identities=32% Similarity=0.292 Sum_probs=22.1
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcC
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
...+++|.|+.|.|||||++.++..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3569999999999999999999863
No 364
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.71 E-value=0.00081 Score=65.76 Aligned_cols=70 Identities=24% Similarity=0.275 Sum_probs=47.0
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccc--hhhhcccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELP--REICELKE 638 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp--~~~~~l~~ 638 (858)
+.|++-||. +. .+ ....+|+.|+.|.|+-|.|+.+ ..+..+++|+.|+|+.| .+..+. ..+.++++
T Consensus 22 kKLNcwg~~-------L~--DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 22 KKLNCWGCG-------LD--DI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPS 89 (388)
T ss_pred hhhcccCCC-------cc--HH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCch
Confidence 455666666 54 33 3455788899999999988888 34778888999999888 444432 23445555
Q ss_pred cccc
Q 037627 639 LRHL 642 (858)
Q Consensus 639 L~~L 642 (858)
|+.|
T Consensus 90 Lr~L 93 (388)
T KOG2123|consen 90 LRTL 93 (388)
T ss_pred hhhH
Confidence 5555
No 365
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.69 E-value=0.02 Score=62.35 Aligned_cols=47 Identities=30% Similarity=0.355 Sum_probs=35.7
Q ss_pred CCceeeccccHHHHHHHHhcC--------------CCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 175 EGNVVGFDDDVSKLLAKLLNK--------------EPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~~--------------~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
+..+||.+..++.+...+... ....+.+.++|++|+|||++|+.++.
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 346899999998886555211 01235789999999999999999986
No 366
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.1 Score=58.66 Aligned_cols=178 Identities=16% Similarity=0.162 Sum_probs=94.4
Q ss_pred CcCCceeeccccHHHH---HHHHhcCC-------CCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCC
Q 037627 173 SIEGNVVGFDDDVSKL---LAKLLNKE-------PRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYD 242 (858)
Q Consensus 173 ~~~~~~vGr~~~~~~l---~~~L~~~~-------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 242 (858)
....++-|.++..+++ ++.|.++. .-++-|.++|++|.|||.||++++-+ ..-.| ++.|..
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgE--A~VPF-----f~iSGS-- 217 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGVPF-----FSISGS-- 217 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcc--cCCCc-----eeccch--
Confidence 4456788987766655 55555442 22467899999999999999999984 33333 222211
Q ss_pred HHHHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh------------h----hHHHHHhhCCC
Q 037627 243 TKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK------------E----TWESLKRAFPD 306 (858)
Q Consensus 243 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~------------~----~~~~l~~~l~~ 306 (858)
+..+..- ......+.+.+.+..++.++.|++|.++.. + ...++......
T Consensus 218 ------~FVemfV---------GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDG 282 (596)
T COG0465 218 ------DFVEMFV---------GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG 282 (596)
T ss_pred ------hhhhhhc---------CCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhcc
Confidence 0111111 112234556666667778999999998742 1 23344444443
Q ss_pred CC--CCcEEEEEeCchhHHh-hc---CCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChH
Q 037627 307 NK--NGSRVIITTRIKEVAE-RS---DENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPL 377 (858)
Q Consensus 307 ~~--~gs~ilvTtR~~~~~~-~~---~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl 377 (858)
.. .|..|+-.|-.+++.. .. ......+.++.-+-..-.++++-++........ .+ ...|++.+-|.-.
T Consensus 283 F~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~--Vd-l~~iAr~tpGfsG 356 (596)
T COG0465 283 FGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAED--VD-LKKIARGTPGFSG 356 (596)
T ss_pred CCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCc--CC-HHHHhhhCCCccc
Confidence 33 2333333333333332 11 111144555555556666666655544333211 11 1227777766643
No 367
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.69 E-value=0.014 Score=53.45 Aligned_cols=42 Identities=33% Similarity=0.389 Sum_probs=29.9
Q ss_pred EEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHH
Q 037627 202 ISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLL 248 (858)
Q Consensus 202 v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 248 (858)
|.|+|++|+|||+||+.+++ .... ...-+.++...+..+++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~~---~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLGR---PVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHTC---EEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhhc---ceEEEEecccccccccee
Confidence 68999999999999999997 3322 244467777777665543
No 368
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.68 E-value=0.012 Score=52.62 Aligned_cols=40 Identities=25% Similarity=0.227 Sum_probs=29.4
Q ss_pred ccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcC
Q 037627 183 DDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 183 ~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
++.+++.+.|...-....++.+.|.-|+||||+++.++..
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3445555555443233569999999999999999999984
No 369
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.68 E-value=0.05 Score=59.19 Aligned_cols=94 Identities=13% Similarity=0.106 Sum_probs=50.3
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcccc-----c--cchhhhhccHHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKIN-----V--LTRELEEMREED 270 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----~--~~~~~~~~~~~~ 270 (858)
....++|+|..|+|||||++.++.. .....+++++.-....+..++....+...... . ..........-.
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l---~~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARA---DAFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC---CCCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 3568999999999999999998863 22223455554334444444444333322110 0 000011111111
Q ss_pred HHHHHHHHh--cCceEEEEEEcCCCh
Q 037627 271 LERYLHNCL--QGKSYLVVVDDAWQK 294 (858)
Q Consensus 271 ~~~~l~~~l--~~~~~LlvlDd~~~~ 294 (858)
..-.+.+++ +++++|+++||+-..
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccchHHH
Confidence 222233333 588999999998543
No 370
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.67 E-value=0.028 Score=54.91 Aligned_cols=51 Identities=25% Similarity=0.312 Sum_probs=32.1
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCc--------ceEEEEEeCCCCCHHHHHHHHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKF--------DRCAWVSVSQDYDTKDLLLRII 251 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f--------~~~~wv~~~~~~~~~~~~~~i~ 251 (858)
..++.|+|++|+||||++.+++........| ..++|++.... ...+.+.+.
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~ 90 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLR 90 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHH
Confidence 3489999999999999999987742222212 36888887765 334444443
No 371
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.67 E-value=0.01 Score=59.42 Aligned_cols=64 Identities=23% Similarity=0.249 Sum_probs=46.5
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHH
Q 037627 186 SKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLR 249 (858)
Q Consensus 186 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 249 (858)
.+++..+....++..+|+|+|.||+|||||.-++......+++--.++-|+-+.+++--.++-+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 4566666666667889999999999999999999885544555445666666777766555443
No 372
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.091 Score=54.54 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=33.4
Q ss_pred CceeeccccHHHHHHHHhcC----------CCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 176 GNVVGFDDDVSKLLAKLLNK----------EPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
+++.|.++.++-|.++..-+ ...-+-|..+|++|.|||-||++++.
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvAT 267 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVAT 267 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHH
Confidence 45667666666666554321 22346789999999999999999997
No 373
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.66 E-value=0.16 Score=46.36 Aligned_cols=78 Identities=13% Similarity=0.140 Sum_probs=65.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhcc-CCChHHHHHHHHHHHhhhhhHHHHhhh
Q 037627 2 VDAVVSFVVQRLGDYLIQEAAFLGEVRTEVRSLKKELEWMLCFIKDAEDKQ-VDDPMIRQWVSDIRDVAHDIEDVLYNF 79 (858)
Q Consensus 2 a~~~~~~~~~kl~~~l~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~~~~~~-~~~~~~~~wl~~~~~~~~d~ed~ld~~ 79 (858)
+.||++.+++.+...+.+........+.-+++|...++.|..++++.+... .-|..-+.=++++.+...+++++++.|
T Consensus 7 ~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~ 85 (147)
T PF05659_consen 7 GGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKC 85 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 346778888888888888888888999999999999999999999998874 334444777889999999999999998
No 374
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.66 E-value=0.0094 Score=56.42 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=19.8
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 037627 201 VISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~ 221 (858)
++.|.|.+|+||||+|..++.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~ 23 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAA 23 (170)
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 689999999999999999986
No 375
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.65 E-value=0.0073 Score=52.88 Aligned_cols=28 Identities=39% Similarity=0.614 Sum_probs=19.8
Q ss_pred EEEEecCcchHHHHHHHHhcCccccCCcce
Q 037627 202 ISVYGMGGLGKTTLARKLYHNNDVKNKFDR 231 (858)
Q Consensus 202 v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~ 231 (858)
|.|.|.+|+||||+|+.++. .....|..
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE
Confidence 78999999999999999998 66677753
No 376
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.63 E-value=0.03 Score=57.29 Aligned_cols=83 Identities=23% Similarity=0.219 Sum_probs=38.2
Q ss_pred EEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcccccc-chhhhhccHHHHHHHHHHH
Q 037627 200 FVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVL-TRELEEMREEDLERYLHNC 278 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~~~~l~~~ 278 (858)
+.|.|+|.+|+||||+|+++... ....-..+.+++.. .+. +..... ....+...-..+...+.+.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~--~~~~~~~v~~i~~~------~~~------~~~~~y~~~~~Ek~~R~~l~s~v~r~ 67 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY--LEEKGKEVVIISDD------SLG------IDRNDYADSKKEKEARGSLKSAVERA 67 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH--HHHTT--EEEE-TH------HHH-------TTSSS--GGGHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH--HHhcCCEEEEEccc------ccc------cchhhhhchhhhHHHHHHHHHHHHHh
Confidence 46899999999999999999873 22221224444311 110 011000 0111222223455556666
Q ss_pred hcCceEEEEEEcCCChhhH
Q 037627 279 LQGKSYLVVVDDAWQKETW 297 (858)
Q Consensus 279 l~~~~~LlvlDd~~~~~~~ 297 (858)
+. +..++|+||.-....+
T Consensus 68 ls-~~~iVI~Dd~nYiKg~ 85 (270)
T PF08433_consen 68 LS-KDTIVILDDNNYIKGM 85 (270)
T ss_dssp HT-T-SEEEE-S---SHHH
T ss_pred hc-cCeEEEEeCCchHHHH
Confidence 64 4578899999766543
No 377
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.61 E-value=0.059 Score=51.51 Aligned_cols=122 Identities=18% Similarity=0.206 Sum_probs=59.1
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCC--CCCHHHHHHHHHHhcccccc--chhhhh--cc-HHHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQ--DYDTKDLLLRIIRSFKINVL--TRELEE--MR-EEDL 271 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~--~~~~~~--~~-~~~~ 271 (858)
..+++|.|+.|.|||||++.++.. .....+.+++.-.. ..........+. .+..... +....+ .+ -+..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~---~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~~~lLS~G~~q 103 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGL---LRPTSGRVRLDGADISQWDPNELGDHVG-YLPQDDELFSGSIAENILSGGQRQ 103 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc---cCCCCCeEEECCEEcccCCHHHHHhheE-EECCCCccccCcHHHHCcCHHHHH
Confidence 459999999999999999999863 12223334332111 111111111110 0000000 000000 11 1222
Q ss_pred HHHHHHHhcCceEEEEEEcCCC---hhhHHHHHhhCCC-CCCCcEEEEEeCchhHHh
Q 037627 272 ERYLHNCLQGKSYLVVVDDAWQ---KETWESLKRAFPD-NKNGSRVIITTRIKEVAE 324 (858)
Q Consensus 272 ~~~l~~~l~~~~~LlvlDd~~~---~~~~~~l~~~l~~-~~~gs~ilvTtR~~~~~~ 324 (858)
.-.+.+.+..++-++++|+... ......+...+.. ...|..||++|.+.....
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 3345555667777999999753 2222333333221 123566888888776554
No 378
>PRK13695 putative NTPase; Provisional
Probab=95.60 E-value=0.015 Score=55.63 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=19.5
Q ss_pred EEEEEecCcchHHHHHHHHhcC
Q 037627 201 VISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
.++|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998763
No 379
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.60 E-value=0.052 Score=60.23 Aligned_cols=53 Identities=21% Similarity=0.162 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCC
Q 037627 185 VSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQ 239 (858)
Q Consensus 185 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 239 (858)
+..+-+.|..+=....++.|.|.+|+|||||+.+++.. ....-..++|++..+
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEE 132 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcC
Confidence 44555555444455679999999999999999999763 222223578887654
No 380
>PRK10867 signal recognition particle protein; Provisional
Probab=95.60 E-value=0.076 Score=58.03 Aligned_cols=24 Identities=46% Similarity=0.512 Sum_probs=21.2
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...++.++|++|+||||.+..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 367999999999999998888876
No 381
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.59 E-value=0.039 Score=53.37 Aligned_cols=21 Identities=38% Similarity=0.444 Sum_probs=19.6
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 037627 201 VISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~ 221 (858)
+|.|+|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 382
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.59 E-value=0.044 Score=51.44 Aligned_cols=118 Identities=20% Similarity=0.178 Sum_probs=61.3
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNC 278 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 278 (858)
..+++|+|..|.|||||++.++.. . ....+.+++........ ...+....+..-.. .. .-+...-.+...
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~--~-~~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~q---lS--~G~~~r~~l~~~ 94 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGL--L-KPTSGEILIDGKDIAKL--PLEELRRRIGYVPQ---LS--GGQRQRVALARA 94 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--C-CCCccEEEECCEEcccC--CHHHHHhceEEEee---CC--HHHHHHHHHHHH
Confidence 469999999999999999999873 2 22345555543211110 00111111111100 00 012222334555
Q ss_pred hcCceEEEEEEcCCC---hhhHHHHHhhCCCC-CCCcEEEEEeCchhHHhhc
Q 037627 279 LQGKSYLVVVDDAWQ---KETWESLKRAFPDN-KNGSRVIITTRIKEVAERS 326 (858)
Q Consensus 279 l~~~~~LlvlDd~~~---~~~~~~l~~~l~~~-~~gs~ilvTtR~~~~~~~~ 326 (858)
+...+-++++|+... ......+...+... ..+..++++|.+.......
T Consensus 95 l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 95 LLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 566788999999853 23333333332211 1245688888877665543
No 383
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.58 E-value=0.024 Score=53.30 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=20.1
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 037627 200 FVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
+.|.++|.+|+||||+|++++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 4678899999999999999997
No 384
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.58 E-value=0.008 Score=54.23 Aligned_cols=20 Identities=45% Similarity=0.728 Sum_probs=19.0
Q ss_pred EEEEecCcchHHHHHHHHhc
Q 037627 202 ISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 202 v~I~G~~GiGKTtLa~~~~~ 221 (858)
|.|.|.+|+||||+|+++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999997
No 385
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=95.58 E-value=0.2 Score=56.55 Aligned_cols=46 Identities=15% Similarity=0.245 Sum_probs=38.9
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..++|....++++.+.+..-.....-|.|+|..|+||+.+|+.+.+
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~ 257 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQ 257 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHH
Confidence 4589999999998888765444456899999999999999999986
No 386
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.54 E-value=0.014 Score=69.03 Aligned_cols=113 Identities=18% Similarity=0.188 Sum_probs=57.2
Q ss_pred CceEEEEEEcCCCh---hhHH----HHHhhCCCCCCCcEEEEEeCchhHHhhcCCCCce--eecCCCChhHHHHHHHHHh
Q 037627 281 GKSYLVVVDDAWQK---ETWE----SLKRAFPDNKNGSRVIITTRIKEVAERSDENAYA--HKLRFLRSDESWELFCEKA 351 (858)
Q Consensus 281 ~~~~LlvlDd~~~~---~~~~----~l~~~l~~~~~gs~ilvTtR~~~~~~~~~~~~~~--~~l~~L~~~e~~~l~~~~~ 351 (858)
..+-|+++|+.-.- ..-. .+...+. ..|+.+|+||....+.......... ..+ .++.+ ... +....
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~-~~d~~-~l~-p~Ykl 475 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASV-LFDEE-TLS-PTYKL 475 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEE-EEcCC-CCc-eEEEE
Confidence 57899999998642 2222 2333332 2467899999988775543222111 111 01111 100 00111
Q ss_pred cCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhHhcCCChHHHHHHHHHHHh
Q 037627 352 FRKSNGSEGLEKLGREMVEKCRGLPLAIVVLGGLLSMKKPQEWRRVRDHLWQ 403 (858)
Q Consensus 352 ~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~~~~~w~~~~~~l~~ 403 (858)
..+. +. ...|-+|++++ |+|-.+..-|..+......+++.+++.+..
T Consensus 476 ~~G~--~g--~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 476 LKGI--PG--ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred CCCC--CC--CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 0110 11 34566777776 677777666666655544556666655543
No 387
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.54 E-value=0.083 Score=57.39 Aligned_cols=25 Identities=40% Similarity=0.457 Sum_probs=22.1
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcC
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
...+|.++|++|+||||++..++..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999998863
No 388
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.53 E-value=0.047 Score=61.49 Aligned_cols=67 Identities=24% Similarity=0.213 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccc
Q 037627 185 VSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKI 256 (858)
Q Consensus 185 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 256 (858)
+..+-+.|..+=+...++.|.|++|+|||||+.+++.. ...+-+.+++++..+. ...+..++ +.++.
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eEs--~~~i~~~~-~~lg~ 315 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEES--RAQLLRNA-YSWGI 315 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCC--HHHHHHHH-HHcCC
Confidence 34555555555456789999999999999999999873 3333356788877653 44555543 45543
No 389
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.52 E-value=0.032 Score=64.81 Aligned_cols=99 Identities=21% Similarity=0.217 Sum_probs=60.3
Q ss_pred HHHHHHh-cCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccc-hhhh
Q 037627 187 KLLAKLL-NKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLT-RELE 264 (858)
Q Consensus 187 ~l~~~L~-~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~ 264 (858)
.+-..|. ++=+..+++.|+|++|+||||||.+++.. ....-..++|++....+++. .++.++..... .-..
T Consensus 47 ~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~ 119 (790)
T PRK09519 47 ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQ 119 (790)
T ss_pred HHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEec
Confidence 3344444 33356789999999999999999887652 22223568999888777643 55666654220 0001
Q ss_pred hccHHHHHHHHHHHhc-CceEEEEEEcCC
Q 037627 265 EMREEDLERYLHNCLQ-GKSYLVVVDDAW 292 (858)
Q Consensus 265 ~~~~~~~~~~l~~~l~-~~~~LlvlDd~~ 292 (858)
....++....+...++ ++.-|||+|-+.
T Consensus 120 ~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 120 PDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred CCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 1122344444555443 456799999975
No 390
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.52 E-value=0.11 Score=56.42 Aligned_cols=24 Identities=38% Similarity=0.409 Sum_probs=21.5
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+++++|+.|+||||++..++.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998876
No 391
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.52 E-value=0.17 Score=53.72 Aligned_cols=103 Identities=22% Similarity=0.242 Sum_probs=57.0
Q ss_pred CcEEEEEEecCcchHHH-HHHHHhcCccccCCcceEEEEEeCCCC-CHHHHHHHHHHhccccccchhhhhccHHHHHHHH
Q 037627 198 RRFVISVYGMGGLGKTT-LARKLYHNNDVKNKFDRCAWVSVSQDY-DTKDLLLRIIRSFKINVLTRELEEMREEDLERYL 275 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTt-La~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 275 (858)
+.+++.++|+.|+|||| ||+.++... ....=..+..++...-. .+.+-++..++-++.+.. ...+..++...+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~-~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~----vv~~~~el~~ai 276 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYV-MLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE----VVYSPKELAEAI 276 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHH-hhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE----EecCHHHHHHHH
Confidence 37899999999999985 565555421 11222457777765432 344555666666666542 112334444444
Q ss_pred HHHhcCceEEEEEEcCCC----hhhHHHHHhhCCCC
Q 037627 276 HNCLQGKSYLVVVDDAWQ----KETWESLKRAFPDN 307 (858)
Q Consensus 276 ~~~l~~~~~LlvlDd~~~----~~~~~~l~~~l~~~ 307 (858)
.. +++. =+|.+|=+.. .....++...+...
T Consensus 277 ~~-l~~~-d~ILVDTaGrs~~D~~~i~el~~~~~~~ 310 (407)
T COG1419 277 EA-LRDC-DVILVDTAGRSQYDKEKIEELKELIDVS 310 (407)
T ss_pred HH-hhcC-CEEEEeCCCCCccCHHHHHHHHHHHhcc
Confidence 33 3333 4666787753 23455555555433
No 392
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.52 E-value=0.022 Score=55.11 Aligned_cols=79 Identities=27% Similarity=0.301 Sum_probs=43.2
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHN 277 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 277 (858)
++.+|+|.|.+|+||||+|+.++. .++... ++-++...-+.. .-........... -...+..+.+-+.+.|..
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~--~~~I~~D~YYk~-~~~~~~~~~~~~n--~d~p~A~D~dLl~~~L~~ 79 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE--QLGVEK--VVVISLDDYYKD-QSHLPFEERNKIN--YDHPEAFDLDLLIEHLKD 79 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH--HhCcCc--ceEeeccccccc-hhhcCHhhcCCcC--ccChhhhcHHHHHHHHHH
Confidence 457999999999999999999998 444332 222222222110 0000111111111 112234456667777777
Q ss_pred HhcCce
Q 037627 278 CLQGKS 283 (858)
Q Consensus 278 ~l~~~~ 283 (858)
.+++++
T Consensus 80 L~~g~~ 85 (218)
T COG0572 80 LKQGKP 85 (218)
T ss_pred HHcCCc
Confidence 777776
No 393
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.51 E-value=0.033 Score=52.61 Aligned_cols=45 Identities=22% Similarity=0.351 Sum_probs=34.0
Q ss_pred eeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcC
Q 037627 178 VVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 178 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
+||.+..++++.+.+........-|.|+|..|+||+.+|+.+.+.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888888888877654444467889999999999999999973
No 394
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.50 E-value=0.022 Score=60.91 Aligned_cols=78 Identities=23% Similarity=0.342 Sum_probs=50.4
Q ss_pred CCceeeccccHHHHHHHHhcC------------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCc---ceEEEEEe-C
Q 037627 175 EGNVVGFDDDVSKLLAKLLNK------------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKF---DRCAWVSV-S 238 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f---~~~~wv~~-~ 238 (858)
+..++|.++.++.+..++... ....+.+.++|++|+|||+||+.++. .....| +...|... -
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk--~l~~~fi~vD~t~f~e~Gy 91 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTEVGY 91 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH--HhCChheeecchhhccCCc
Confidence 356899999999888777541 11246789999999999999999987 344433 22222221 1
Q ss_pred CCCCHHHHHHHHHHhc
Q 037627 239 QDYDTKDLLLRIIRSF 254 (858)
Q Consensus 239 ~~~~~~~~~~~i~~~l 254 (858)
...+.+..++.+....
T Consensus 92 vG~d~e~~ir~L~~~A 107 (443)
T PRK05201 92 VGRDVESIIRDLVEIA 107 (443)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 2235566666665543
No 395
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.50 E-value=0.059 Score=52.04 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=21.3
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|.|+.|.|||||++.++.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFG 48 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999986
No 396
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=95.50 E-value=0.33 Score=54.92 Aligned_cols=47 Identities=15% Similarity=0.264 Sum_probs=38.2
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcC
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
..++|+...+.++.+.+.........|.|+|.+|+|||++|+.+.+.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 35899998888888777554444567999999999999999999873
No 397
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.49 E-value=0.075 Score=53.25 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCceEEEEEEcCCCh---h---hHHHHHhhCCCCCCCcEEEEEeCchhHHhhcCC
Q 037627 271 LERYLHNCLQGKSYLVVVDDAWQK---E---TWESLKRAFPDNKNGSRVIITTRIKEVAERSDE 328 (858)
Q Consensus 271 ~~~~l~~~l~~~~~LlvlDd~~~~---~---~~~~l~~~l~~~~~gs~ilvTtR~~~~~~~~~~ 328 (858)
-.-++.+.|..++=+|++|+--+. . ..-++...+. ...|..||+++.+.+.+...+.
T Consensus 145 Qrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~-~~~~~tvv~vlHDlN~A~ryad 207 (258)
T COG1120 145 QRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN-REKGLTVVMVLHDLNLAARYAD 207 (258)
T ss_pred HHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHH-HhcCCEEEEEecCHHHHHHhCC
Confidence 345566778888889999986432 1 1112222222 1336679999999877766544
No 398
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.49 E-value=0.027 Score=62.35 Aligned_cols=53 Identities=21% Similarity=0.157 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCC
Q 037627 186 SKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQD 240 (858)
Q Consensus 186 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 240 (858)
..+-+.|.++=....++.|+|.+|+|||||+.+++.. ....-..++|++....
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ees 119 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEES 119 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcccc
Confidence 3444455444345679999999999999999999873 3222245788886543
No 399
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.47 E-value=0.097 Score=48.51 Aligned_cols=21 Identities=48% Similarity=0.687 Sum_probs=19.5
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 037627 201 VISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~ 221 (858)
++.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 400
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.44 E-value=0.12 Score=50.76 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.5
Q ss_pred cEEEEEEecCcchHHHHHHHHhcC
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
..+++|.|+.|.|||||++.++..
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 469999999999999999998763
No 401
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.44 E-value=0.083 Score=53.57 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=19.1
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 037627 201 VISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~ 221 (858)
+..|+|++|+|||+||..++.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 668899999999999999975
No 402
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.41 E-value=0.1 Score=52.21 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=21.2
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|+|+.|+|||||++.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTG 50 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45999999999999999999986
No 403
>PRK05439 pantothenate kinase; Provisional
Probab=95.40 E-value=0.056 Score=56.17 Aligned_cols=93 Identities=22% Similarity=0.238 Sum_probs=49.0
Q ss_pred HHHHHHHHhc--CCCCcEEEEEEecCcchHHHHHHHHhcCccccCC--cceEEEEEeCCCCCHHHHHHHHHHhccccccc
Q 037627 185 VSKLLAKLLN--KEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNK--FDRCAWVSVSQDYDTKDLLLRIIRSFKINVLT 260 (858)
Q Consensus 185 ~~~l~~~L~~--~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 260 (858)
.......+.. ......+|+|.|.+|+||||+|+.+.. ..... -..+.-++...-+.....+..- ..+...+.
T Consensus 70 ~~~~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~- 145 (311)
T PRK05439 70 LQAALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKGF- 145 (311)
T ss_pred HHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhhh-hccccCCC-
Confidence 3344444443 334577999999999999999999886 33221 1234455555544433332210 00000111
Q ss_pred hhhhhccHHHHHHHHHHHhcCce
Q 037627 261 RELEEMREEDLERYLHNCLQGKS 283 (858)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~l~~~~ 283 (858)
.+..+.+.+...+.....++.
T Consensus 146 --Pes~D~~~l~~~L~~Lk~G~~ 166 (311)
T PRK05439 146 --PESYDMRALLRFLSDVKSGKP 166 (311)
T ss_pred --cccccHHHHHHHHHHHHcCCC
Confidence 123345566666666555554
No 404
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.13 Score=49.72 Aligned_cols=58 Identities=14% Similarity=0.177 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCceEEEEEEcCCChhh---HHHHH---hhCCCCCCCcEEEEEeCchhHHhhcCCC
Q 037627 270 DLERYLHNCLQGKSYLVVVDDAWQKET---WESLK---RAFPDNKNGSRVIITTRIKEVAERSDEN 329 (858)
Q Consensus 270 ~~~~~l~~~l~~~~~LlvlDd~~~~~~---~~~l~---~~l~~~~~gs~ilvTtR~~~~~~~~~~~ 329 (858)
.-...+.+.+-=++-+.|||..++--+ ++.+. ..+.. .|+-+++.|..+.++....+.
T Consensus 150 kKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~--~~~~~liITHy~rll~~i~pD 213 (251)
T COG0396 150 KKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALRE--EGRGVLIITHYQRLLDYIKPD 213 (251)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhc--CCCeEEEEecHHHHHhhcCCC
Confidence 344556666666788999999986433 22222 23332 355678888888888877644
No 405
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.37 E-value=0.01 Score=46.63 Aligned_cols=22 Identities=41% Similarity=0.670 Sum_probs=19.9
Q ss_pred EEEEEecCcchHHHHHHHHhcC
Q 037627 201 VISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
+++|.|..|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999973
No 406
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.36 E-value=0.016 Score=51.36 Aligned_cols=35 Identities=34% Similarity=0.429 Sum_probs=26.4
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCC
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQD 240 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 240 (858)
.+-|.|+|-+|+||||++.+++. .. ..-|++++.-
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae--~~-----~~~~i~isd~ 41 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAE--KT-----GLEYIEISDL 41 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHH--Hh-----CCceEehhhH
Confidence 45689999999999999999996 22 2346666543
No 407
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.34 E-value=0.02 Score=58.89 Aligned_cols=53 Identities=25% Similarity=0.318 Sum_probs=40.7
Q ss_pred cCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHH
Q 037627 194 NKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRI 250 (858)
Q Consensus 194 ~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 250 (858)
++=+..+++.|+|.+|+|||+++.++.. ........++||+..+. +.++.+..
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~--~~~l~~~~ 70 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES--PEELLENA 70 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC--HHHHHHHH
Confidence 3335678999999999999999999998 55556788999998764 34444433
No 408
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.33 E-value=0.059 Score=56.65 Aligned_cols=25 Identities=52% Similarity=0.759 Sum_probs=22.5
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcC
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
...+++++|++|+||||++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999999999873
No 409
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.33 E-value=0.38 Score=49.41 Aligned_cols=135 Identities=9% Similarity=0.064 Sum_probs=71.9
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcccccc----ch
Q 037627 186 SKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVL----TR 261 (858)
Q Consensus 186 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~ 261 (858)
+++...+..+. -.....++|+.|+||+++|..++...- ... .+ . ..+.+. ....+.. ++
T Consensus 7 ~~L~~~i~~~r-l~HAyLf~G~~G~Gk~~lA~~~A~~ll-C~~----------~~-~---~c~~~~-~~~HPD~~~i~p~ 69 (290)
T PRK05917 7 EALIQRVRDQK-VPSAIILHGQDLSNLSARAYELASLIL-KET----------SP-E---AAYKIS-QKIHPDIHEFSPQ 69 (290)
T ss_pred HHHHHHHHcCC-cCeeEeeECCCCCcHHHHHHHHHHHHh-CCC----------Cc-c---HHHHHh-cCCCCCEEEEecC
Confidence 45555555442 345778999999999999998876311 000 00 0 011111 1111100 00
Q ss_pred hh-hhccHHHHHHHHHHHh-----cCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCch-hHHhhcCCCCce
Q 037627 262 EL-EEMREEDLERYLHNCL-----QGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRIK-EVAERSDENAYA 332 (858)
Q Consensus 262 ~~-~~~~~~~~~~~l~~~l-----~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~-~~~~~~~~~~~~ 332 (858)
.. .....+++.+ +.+.+ .++.-++|+|+++.. +.+..++..+...++++.+|++|.+. .+..-.......
T Consensus 70 ~~~~~I~idqiR~-l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~ 148 (290)
T PRK05917 70 GKGRLHSIETPRA-IKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLS 148 (290)
T ss_pred CCCCcCcHHHHHH-HHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceE
Confidence 00 0122333332 22222 355668999999865 56788888887777777777766664 333333333356
Q ss_pred eecCCC
Q 037627 333 HKLRFL 338 (858)
Q Consensus 333 ~~l~~L 338 (858)
+.+.++
T Consensus 149 ~~~~~~ 154 (290)
T PRK05917 149 IHIPME 154 (290)
T ss_pred EEccch
Confidence 666655
No 410
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.32 E-value=0.084 Score=57.40 Aligned_cols=93 Identities=17% Similarity=0.202 Sum_probs=51.7
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCC-CCHHHHHHHHHHhcccccc--------chhhhhccH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQD-YDTKDLLLRIIRSFKINVL--------TRELEEMRE 268 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~--------~~~~~~~~~ 268 (858)
....++|.|..|+|||||++.++... . .+.+++.-+++. ....++..+.+..-+.... .........
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~--~--~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA--D--ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc--C--CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 45689999999999999999998632 1 234455555443 3344555444443221110 000111111
Q ss_pred HHHHHHHHHHh--cCceEEEEEEcCCCh
Q 037627 269 EDLERYLHNCL--QGKSYLVVVDDAWQK 294 (858)
Q Consensus 269 ~~~~~~l~~~l--~~~~~LlvlDd~~~~ 294 (858)
-...-.+.+++ +++++|+++||+-..
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 12222333444 588999999999543
No 411
>PRK06547 hypothetical protein; Provisional
Probab=95.31 E-value=0.021 Score=54.21 Aligned_cols=26 Identities=35% Similarity=0.372 Sum_probs=23.1
Q ss_pred CCcEEEEEEecCcchHHHHHHHHhcC
Q 037627 197 PRRFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 197 ~~~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
....+|+|.|++|+||||+|+.+++.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999873
No 412
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.30 E-value=0.15 Score=53.62 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=21.6
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+++|.|+.|.|||||.+.++.
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~G 50 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITG 50 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC
Confidence 356999999999999999999986
No 413
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.29 E-value=0.18 Score=46.86 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=19.7
Q ss_pred EEEEEecCcchHHHHHHHHhcC
Q 037627 201 VISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
++.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999873
No 414
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.29 E-value=0.17 Score=50.28 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.6
Q ss_pred cEEEEEEecCcchHHHHHHHHhcC
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
..+++|+|+.|+|||||++.++-.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 459999999999999999999763
No 415
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.25 E-value=0.00096 Score=65.28 Aligned_cols=59 Identities=14% Similarity=0.103 Sum_probs=24.5
Q ss_pred CCccccccceeecccccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeec
Q 037627 654 NLSNLQTLKYVERGSWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRL 712 (858)
Q Consensus 654 ~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 712 (858)
+|+.|+.|.++-|.+....++..+++|++|++..|.+...-...-+.++++|+.|.|..
T Consensus 39 kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred hcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 34444444444444444444444444444444444333222223334444444444433
No 416
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.22 E-value=0.17 Score=50.57 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.6
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+++|.|+.|.|||||++.++-
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G 52 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAG 52 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 356999999999999999999986
No 417
>PRK08233 hypothetical protein; Provisional
Probab=95.21 E-value=0.014 Score=56.40 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=21.8
Q ss_pred cEEEEEEecCcchHHHHHHHHhcC
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
..+|+|.|.+|+||||||..++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999973
No 418
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=95.20 E-value=0.07 Score=62.75 Aligned_cols=134 Identities=16% Similarity=0.223 Sum_probs=79.4
Q ss_pred ccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcccccc---
Q 037627 183 DDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVL--- 259 (858)
Q Consensus 183 ~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--- 259 (858)
..+.+|.+.+.... |+.|.|+.|.||||-.-+++.+.-. ...+.+-+.=.+...+..+...++++++....
T Consensus 53 ~~~~~i~~ai~~~~----vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~V 126 (845)
T COG1643 53 AVRDEILKAIEQNQ----VVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETV 126 (845)
T ss_pred HHHHHHHHHHHhCC----EEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCcee
Confidence 55667777776554 9999999999999999888864221 11234433333334566778888888876421
Q ss_pred ------------chhhhhccHHHHHHHHHH-HhcCceEEEEEEcCCChhhHHH-----HHhhCCCCCCCcEEEEEeCchh
Q 037627 260 ------------TRELEEMREEDLERYLHN-CLQGKSYLVVVDDAWQKETWES-----LKRAFPDNKNGSRVIITTRIKE 321 (858)
Q Consensus 260 ------------~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDd~~~~~~~~~-----l~~~l~~~~~gs~ilvTtR~~~ 321 (858)
.....-++...+.+++.. .+-.+=-.||+|++++...-.+ ++..+....+.-||||+|-.-+
T Consensus 127 GY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld 206 (845)
T COG1643 127 GYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLD 206 (845)
T ss_pred eEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccC
Confidence 111223344555555542 2223344899999987642112 2222233333589999886544
Q ss_pred H
Q 037627 322 V 322 (858)
Q Consensus 322 ~ 322 (858)
.
T Consensus 207 ~ 207 (845)
T COG1643 207 A 207 (845)
T ss_pred H
Confidence 3
No 419
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.19 E-value=0.11 Score=52.04 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=21.1
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|.|+.|.|||||++.++-
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 46999999999999999999975
No 420
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.19 E-value=0.018 Score=55.75 Aligned_cols=95 Identities=21% Similarity=0.230 Sum_probs=49.3
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNC 278 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 278 (858)
...++|+|+.|+||||+++.++.. .... ..++.+ .... +....--.....................+.++..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~--i~~~-~~~i~i--ed~~---E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF--IPPD-ERIITI--EDTA---ELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSA 96 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh--cCCC-CCEEEE--CCcc---ccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHH
Confidence 458999999999999999999863 2221 223322 1111 0000000000000000000001112344555666
Q ss_pred hcCceEEEEEEcCCChhhHHHHH
Q 037627 279 LQGKSYLVVVDDAWQKETWESLK 301 (858)
Q Consensus 279 l~~~~~LlvlDd~~~~~~~~~l~ 301 (858)
++..+=.++++++.+.+.+..+.
T Consensus 97 lR~~pd~i~igEir~~ea~~~~~ 119 (186)
T cd01130 97 LRMRPDRIIVGEVRGGEALDLLQ 119 (186)
T ss_pred hccCCCEEEEEccCcHHHHHHHH
Confidence 77778889999999887665443
No 421
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.18 E-value=0.03 Score=57.54 Aligned_cols=33 Identities=30% Similarity=0.413 Sum_probs=25.5
Q ss_pred HHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcC
Q 037627 187 KLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 187 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
.+++.+... .+-+.++|+.|+|||++++.+...
T Consensus 24 ~ll~~l~~~---~~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 24 YLLDLLLSN---GRPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HHHHHHHHC---TEEEEEESSTTSSHHHHHHHHHHC
T ss_pred HHHHHHHHc---CCcEEEECCCCCchhHHHHhhhcc
Confidence 445555543 457799999999999999998863
No 422
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.16 E-value=0.048 Score=53.48 Aligned_cols=106 Identities=16% Similarity=0.191 Sum_probs=51.6
Q ss_pred CCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHH
Q 037627 197 PRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLH 276 (858)
Q Consensus 197 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 276 (858)
..+.++.|.|.+|+||||++..+.. ... ....+.++...-...-.....+... .... ...........+...+.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~--~~~--~~~~v~i~~D~~r~~~p~~~~~~~~-~~~~-~~~~~~~~a~~~~~~~~ 86 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLE--EFG--GGGIVVIDADEFRQFHPDYDELLKA-DPDE-ASELTQKEASRLAEKLI 86 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHH--HT---TT-SEEE-GGGGGGGSTTHHHHHHH-HCCC-THHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhh--hcc--CCCeEEEehHHHHHhccchhhhhhh-hhhh-hHHHHHHHHHHHHHHHH
Confidence 4577899999999999999999986 221 3456666543321111112222221 1111 11112222344556666
Q ss_pred HHhcCceEEEEEEcCCCh-hhHHHHHhhCCCCC
Q 037627 277 NCLQGKSYLVVVDDAWQK-ETWESLKRAFPDNK 308 (858)
Q Consensus 277 ~~l~~~~~LlvlDd~~~~-~~~~~l~~~l~~~~ 308 (858)
+....+++=||+|..-.. +....+...+...+
T Consensus 87 ~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~G 119 (199)
T PF06414_consen 87 EYAIENRYNIIFEGTLSNPSKLRKLIREAKAAG 119 (199)
T ss_dssp HHHHHCT--EEEE--TTSSHHHHHHHHHHHCTT
T ss_pred HHHHHcCCCEEEecCCCChhHHHHHHHHHHcCC
Confidence 666667778888987543 44444555555433
No 423
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.15 E-value=0.04 Score=54.01 Aligned_cols=120 Identities=13% Similarity=0.153 Sum_probs=57.9
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccc-hhhhhc--cHHHHHHHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLT-RELEEM--REEDLERYL 275 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~--~~~~~~~~l 275 (858)
.+++.|+|+.|.||||+.+.++...-.. + ...++.+.. ..-.+...|...++..... ...... ...++.. +
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la-~--~G~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~-i 102 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMA-Q--IGCFVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAY-I 102 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHH-H--cCCCcchhh--cCccChhheeEecCCccccchhhhHHHHHHHHHHH-H
Confidence 4799999999999999999886421100 0 011111110 0001122222222221110 000000 1112211 1
Q ss_pred HHHhcCceEEEEEEcCCC---hhh----HHHHHhhCCCCCCCcEEEEEeCchhHHhhcC
Q 037627 276 HNCLQGKSYLVVVDDAWQ---KET----WESLKRAFPDNKNGSRVIITTRIKEVAERSD 327 (858)
Q Consensus 276 ~~~l~~~~~LlvlDd~~~---~~~----~~~l~~~l~~~~~gs~ilvTtR~~~~~~~~~ 327 (858)
.+ +..++-|+++|+... ..+ ...+...+... |..+|++|-...++....
T Consensus 103 l~-~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~--~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 103 LD-YADGDSLVLIDELGRGTSSADGFAISLAILECLIKK--ESTVFFATHFRDIAAILG 158 (204)
T ss_pred HH-hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc--CCEEEEECChHHHHHHhh
Confidence 11 235678999999843 222 12233333322 678999999988877654
No 424
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.14 E-value=0.062 Score=57.61 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=60.0
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNC 278 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 278 (858)
...+.|+|+.|+||||+++.+.. .+.......++. +.++... .... ...+-... +. ........+.++..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~t-iEdp~E~--~~~~-~~~~i~q~---ev-g~~~~~~~~~l~~~ 191 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIIT-IEDPIEY--VHRN-KRSLINQR---EV-GLDTLSFANALRAA 191 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEE-EcCChhh--hccC-ccceEEcc---cc-CCCCcCHHHHHHHh
Confidence 46899999999999999999886 333333334432 2222111 0000 00000000 00 01112345667777
Q ss_pred hcCceEEEEEEcCCChhhHHHHHhhCCCCCCCcEEEEEeCc
Q 037627 279 LQGKSYLVVVDDAWQKETWESLKRAFPDNKNGSRVIITTRI 319 (858)
Q Consensus 279 l~~~~~LlvlDd~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 319 (858)
++..+=.|++|++.+.+.+....... ..|..++.|.-.
T Consensus 192 lr~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha 229 (343)
T TIGR01420 192 LREDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHT 229 (343)
T ss_pred hccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcC
Confidence 88899999999999887766544332 235545555543
No 425
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.13 E-value=0.16 Score=50.13 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=21.6
Q ss_pred cEEEEEEecCcchHHHHHHHHhcC
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
..+++|.|+.|.|||||++.++..
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999999863
No 426
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.13 E-value=0.14 Score=50.54 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=20.9
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...|+|.|+.|+|||||.+.++-
T Consensus 29 GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45999999999999999999974
No 427
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.13 E-value=0.13 Score=61.25 Aligned_cols=179 Identities=16% Similarity=0.145 Sum_probs=86.9
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCcc--------------ccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhh
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNND--------------VKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTREL 263 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~--------------~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 263 (858)
..+++.|+|+.+.||||+.+.++--.- .-..|+ .++..++...+...-+..+.
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~-~i~~~ig~~~si~~~lStfS------------ 392 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFK-EIFADIGDEQSIEQSLSTFS------------ 392 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccc-eEEEecCCccchhhchhHHH------------
Confidence 457899999999999999998853100 001122 22233332222111111100
Q ss_pred hhccHHHHHHHHHHHhcCceEEEEEEcCCCh---hhHHH----HHhhCCCCCCCcEEEEEeCchhHHhhcCCCCcee--e
Q 037627 264 EEMREEDLERYLHNCLQGKSYLVVVDDAWQK---ETWES----LKRAFPDNKNGSRVIITTRIKEVAERSDENAYAH--K 334 (858)
Q Consensus 264 ~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~---~~~~~----l~~~l~~~~~gs~ilvTtR~~~~~~~~~~~~~~~--~ 334 (858)
.....+...+.. + ..+-|+++|+.-.- ..-.. +...+.. .|+.+|+||....+........... .
T Consensus 393 --~~m~~~~~Il~~-~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~--~~~~vIitTH~~el~~~~~~~~~v~~~~ 466 (782)
T PRK00409 393 --GHMTNIVRILEK-A-DKNSLVLFDELGAGTDPDEGAALAISILEYLRK--RGAKIIATTHYKELKALMYNREGVENAS 466 (782)
T ss_pred --HHHHHHHHHHHh-C-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH--CCCEEEEECChHHHHHHHhcCCCeEEEE
Confidence 011122222222 2 47789999998642 22222 2333322 3678999999987766543322111 1
Q ss_pred cCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhHhcCCChHHHHHHHHHHHh
Q 037627 335 LRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVLGGLLSMKKPQEWRRVRDHLWQ 403 (858)
Q Consensus 335 l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~~~~~w~~~~~~l~~ 403 (858)
+. ++. +.....-+...+. + -...|-+|++++ |+|-.+..-|..+-.......+.+++.+..
T Consensus 467 ~~-~d~-~~l~~~Ykl~~G~---~--g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~~ 527 (782)
T PRK00409 467 VE-FDE-ETLRPTYRLLIGI---P--GKSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLEE 527 (782)
T ss_pred EE-Eec-CcCcEEEEEeeCC---C--CCcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 11 111 1111000000010 1 134566777777 677777666666655544456666655543
No 428
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.13 E-value=0.0018 Score=73.75 Aligned_cols=215 Identities=23% Similarity=0.261 Sum_probs=107.5
Q ss_pred ccccCCcccceEeccCC--ccccc----CcccccCCCCcEEeccccccccccchhhhccccccccccccccccCCCCCcc
Q 037627 584 EEMVKLVNLKYLRLTNA--HIDVI----PSCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGNFTGTLNIENLSN 657 (858)
Q Consensus 584 ~~~~~l~~L~~L~L~~n--~i~~l----p~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~l~~ 657 (858)
.....+++|+.|+++++ .+... +.....+.+|+.|+++++..++.. .+.. + ...+++
T Consensus 208 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~--~l~~------l---------~~~c~~ 270 (482)
T KOG1947|consen 208 ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI--GLSA------L---------ASRCPN 270 (482)
T ss_pred HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch--hHHH------H---------HhhCCC
Confidence 34556667777777652 11111 122234566666666666322111 0100 0 112556
Q ss_pred ccccceeeccccccc----CcccccCCCeeEEeecccccc--cchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCcc
Q 037627 658 LQTLKYVERGSWAEI----NPEKLVNLRDLRIISKYQEEE--FSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLI 731 (858)
Q Consensus 658 L~~L~l~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 731 (858)
|+.|.+..+...... ....+++|++|++.++..... +. ....++++|+.|.+.... .++.++
T Consensus 271 L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~-~~~~~c~~l~~l~~~~~~-----------~c~~l~ 338 (482)
T KOG1947|consen 271 LETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLE-ALLKNCPNLRELKLLSLN-----------GCPSLT 338 (482)
T ss_pred cceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHH-HHHHhCcchhhhhhhhcC-----------CCccHH
Confidence 666664444421111 123566677777777764322 22 234446666665443211 144555
Q ss_pred EEEecccCC----CCChhhhhccCCccEEEEecccCCCCC-ccccCCCCCCCeeEeeccccCCceEEECCCCccccceee
Q 037627 732 DLRLSGKIE----KLPEDLHEVLPNLECLSLKKSHLKEDP-MPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQ 806 (858)
Q Consensus 732 ~L~l~~~~~----~~p~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~ 806 (858)
.+.+.+... .+.......+++|+.+.|..+...... ...+.++++|. ..+... ...+.+++.|+
T Consensus 339 ~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~----------~~~~~~l~~L~ 407 (482)
T KOG1947|consen 339 DLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR----------LCRSDSLRVLN 407 (482)
T ss_pred HHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH----------hccCCccceEe
Confidence 555555321 233334444788898888888744333 24566777773 322211 11222377788
Q ss_pred ecCCCCCCeEEEccC--ccccccceeecccccCC
Q 037627 807 LIDLNDLAQWQVEDG--AMPILRGLRVTNAYKLK 838 (858)
Q Consensus 807 l~~~~~l~~~~~~~~--~l~~L~~L~l~~c~~L~ 838 (858)
+..|...+.-..... ...++..+++.+|+.+.
T Consensus 408 l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 408 LSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred cccCccccccchHHHhhhhhccccCCccCccccc
Confidence 877765554433221 15667777888777655
No 429
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.094 Score=61.54 Aligned_cols=114 Identities=18% Similarity=0.221 Sum_probs=67.2
Q ss_pred CceeeccccHHHHHHHHhcCC-----C-CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHH
Q 037627 176 GNVVGFDDDVSKLLAKLLNKE-----P-RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLR 249 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~-----~-~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 249 (858)
..++|-++.+..|.+.+.... + ....+.+.|+.|+|||.||++++. .+-+..+..+-++.+.. ..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse~------~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSEF------QE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhhh------hh-
Confidence 568888888998888886541 1 456888999999999999999997 34333344454444431 11
Q ss_pred HHHhccccccchhhhhccHHHHHHHHHHHhcCceE-EEEEEcCCCh--hhHHHHHhhC
Q 037627 250 IIRSFKINVLTRELEEMREEDLERYLHNCLQGKSY-LVVVDDAWQK--ETWESLKRAF 304 (858)
Q Consensus 250 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlvlDd~~~~--~~~~~l~~~l 304 (858)
+.+.++.+.. ... ......+.+.++.++| +|+|||++.. .....+...+
T Consensus 633 vskligsp~g---yvG---~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~l 684 (898)
T KOG1051|consen 633 VSKLIGSPPG---YVG---KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLL 684 (898)
T ss_pred hhhccCCCcc---ccc---chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHH
Confidence 3333333211 000 1112234455556665 7889999854 3344344443
No 430
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.12 E-value=0.18 Score=51.47 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.7
Q ss_pred cEEEEEEecCcchHHHHHHHHhcC
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
..+++|.|+.|.|||||++.++..
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 569999999999999999999863
No 431
>PRK06762 hypothetical protein; Provisional
Probab=95.09 E-value=0.015 Score=55.19 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=21.2
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+|.|+|++|+||||+|+.+++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 432
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.09 E-value=0.24 Score=49.57 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.2
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|.|+.|.|||||++.++-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G 48 (223)
T TIGR03740 26 NSVYGLLGPNGAGKSTLLKMITG 48 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45999999999999999999986
No 433
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.09 E-value=0.1 Score=59.48 Aligned_cols=126 Identities=17% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCC-cceEEEEEeCCCCCHHHHHHHHHHhccccccchhh
Q 037627 185 VSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNK-FDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTREL 263 (858)
Q Consensus 185 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 263 (858)
+..+-+.|.++=+..+++.|.|.+|+|||+||.+++. ....+ -..++|++.... .+-+.+-+..++.....-..
T Consensus 17 I~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~--~~~~~~ge~~lyis~ee~---~~~i~~~~~~~g~d~~~~~~ 91 (509)
T PRK09302 17 IEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLV--NGIKRFDEPGVFVTFEES---PEDIIRNVASFGWDLQKLID 91 (509)
T ss_pred chhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH--HHHHhcCCCEEEEEccCC---HHHHHHHHHHcCCCHHHHhh
Q ss_pred hhc-------------------cHHHHHHHHHHHh-cCceEEEEEEcCCC-----------hhhHHHHHhhCCCCCCCcE
Q 037627 264 EEM-------------------REEDLERYLHNCL-QGKSYLVVVDDAWQ-----------KETWESLKRAFPDNKNGSR 312 (858)
Q Consensus 264 ~~~-------------------~~~~~~~~l~~~l-~~~~~LlvlDd~~~-----------~~~~~~l~~~l~~~~~gs~ 312 (858)
... +.+.+...+.+.. ..+.-.+|+|.+.. ......+...+... |..
T Consensus 92 ~g~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~d~~~~~r~~l~~L~~~Lk~~--g~T 169 (509)
T PRK09302 92 EGKLFILDASPDPSEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGFSNEAVVRRELRRLFAWLKQK--GVT 169 (509)
T ss_pred CCeEEEEecCcccccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhccCHHHHHHHHHHHHHHHHhC--CCE
Q ss_pred EEEEe
Q 037627 313 VIITT 317 (858)
Q Consensus 313 ilvTt 317 (858)
+|+|+
T Consensus 170 vLlt~ 174 (509)
T PRK09302 170 AVITG 174 (509)
T ss_pred EEEEE
No 434
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.08 E-value=0.17 Score=50.29 Aligned_cols=21 Identities=43% Similarity=0.561 Sum_probs=20.0
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 037627 201 VISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~ 221 (858)
+++|.|+.|.|||||++.++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999985
No 435
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.07 E-value=0.22 Score=51.03 Aligned_cols=24 Identities=33% Similarity=0.331 Sum_probs=21.6
Q ss_pred cEEEEEEecCcchHHHHHHHHhcC
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
..+++|.|+.|+|||||++.++..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999863
No 436
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.07 E-value=0.2 Score=50.72 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=21.3
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|.|+.|+|||||++.++.
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G 49 (236)
T cd03253 27 GKKVAIVGPSGSGKSTILRLLFR 49 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46999999999999999999986
No 437
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.07 E-value=0.14 Score=53.59 Aligned_cols=92 Identities=13% Similarity=0.198 Sum_probs=50.1
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeC-CCCCHHHHHHHHHHhccccc--------cchhhhhccHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVS-QDYDTKDLLLRIIRSFKINV--------LTRELEEMREE 269 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~--------~~~~~~~~~~~ 269 (858)
...++|.|..|+|||||++.++.. ... +..+..-+. ...+..++.......-+... ...........
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~--~~~--~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARG--TTA--DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCC--CCC--CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 458899999999999999999873 221 223333333 33455555555554322111 00001111111
Q ss_pred HHHHHHHHHh--cCceEEEEEEcCCCh
Q 037627 270 DLERYLHNCL--QGKSYLVVVDDAWQK 294 (858)
Q Consensus 270 ~~~~~l~~~l--~~~~~LlvlDd~~~~ 294 (858)
...-.+.+++ +++.+|+++||+...
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccchHH
Confidence 2222233333 588999999998543
No 438
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.06 E-value=0.16 Score=50.96 Aligned_cols=24 Identities=38% Similarity=0.364 Sum_probs=21.7
Q ss_pred cEEEEEEecCcchHHHHHHHHhcC
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
..+++|.|+.|+|||||++.++..
T Consensus 48 Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999863
No 439
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.04 E-value=0.08 Score=48.25 Aligned_cols=49 Identities=31% Similarity=0.382 Sum_probs=34.3
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcccccc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVL 259 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 259 (858)
.++++|+|.+|+||||+.+.+.... ++.+ -.+..++..+++...+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l-~~~~-----------ivNyG~~Mle~A~k~glve~ 52 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL-VKHK-----------IVNYGDLMLEIAKKKGLVEH 52 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH-hhce-----------eeeHhHHHHHHHHHhCCccc
Confidence 5799999999999999999888632 1111 11345677777777776554
No 440
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.04 E-value=0.21 Score=50.82 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=21.8
Q ss_pred cEEEEEEecCcchHHHHHHHHhcC
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
..+++|.|+.|+|||||++.++..
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999874
No 441
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.03 E-value=0.066 Score=53.24 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=27.5
Q ss_pred EEEEEecCcchHHHHHHHHhcCccccC--CcceEEEEEeCCCCCH
Q 037627 201 VISVYGMGGLGKTTLARKLYHNNDVKN--KFDRCAWVSVSQDYDT 243 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~~~~~~~--~f~~~~wv~~~~~~~~ 243 (858)
+|+|.|.+|+||||+|+.+.. .... .=..+..++...-+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~--~l~~~~~~~~v~vi~~D~f~~~ 43 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA--LLSRWPDHPNVELITTDGFLYP 43 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH--HHhhcCCCCcEEEEecCcccCc
Confidence 589999999999999999987 3321 1123455555554433
No 442
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.02 E-value=0.11 Score=50.87 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.8
Q ss_pred cEEEEEEecCcchHHHHHHHHhcC
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
..+++|+|..|.|||||++.++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999874
No 443
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.01 E-value=0.06 Score=59.42 Aligned_cols=89 Identities=29% Similarity=0.277 Sum_probs=47.3
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCC-CHHHHHHHHHHhccccccchhhhhccHHHHHHHHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDY-DTKDLLLRIIRSFKINVLTRELEEMREEDLERYLH 276 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 276 (858)
...+++|+|++|+||||++..++.....+.....+..++..... ...+.+......++.... ...+...+...+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~----~a~d~~~L~~aL~ 424 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH----EADSAESLLDLLE 424 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeE----ecCcHHHHHHHHH
Confidence 35799999999999999999888632222112345555543221 222333333333333221 1112234444444
Q ss_pred HHhcCceEEEEEEcCC
Q 037627 277 NCLQGKSYLVVVDDAW 292 (858)
Q Consensus 277 ~~l~~~~~LlvlDd~~ 292 (858)
+ +. ..=+|++|..-
T Consensus 425 ~-l~-~~DLVLIDTaG 438 (559)
T PRK12727 425 R-LR-DYKLVLIDTAG 438 (559)
T ss_pred H-hc-cCCEEEecCCC
Confidence 3 33 34588889875
No 444
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.00 E-value=0.76 Score=47.39 Aligned_cols=69 Identities=13% Similarity=0.150 Sum_probs=47.0
Q ss_pred cCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCch-hHHhhcCCCCceeecCCCChhHHHHHHHH
Q 037627 280 QGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRIK-EVAERSDENAYAHKLRFLRSDESWELFCE 349 (858)
Q Consensus 280 ~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~-~~~~~~~~~~~~~~l~~L~~~e~~~l~~~ 349 (858)
.+++-++|+|+++.. .....++..+...++++.+|++|.+. .+..-+......+.+.+ +.++..+.+..
T Consensus 102 ~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 102 EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 356679999999866 46778888888777777777777554 44444444446777766 66666666643
No 445
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.00 E-value=0.031 Score=64.13 Aligned_cols=77 Identities=13% Similarity=0.105 Sum_probs=58.0
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhc
Q 037627 175 EGNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSF 254 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 254 (858)
-+.++|.+..++.+...+... +.+.|+|++|+||||+|+.+++. -...+++..+|+.. ...+....++.++..+
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~-l~~~~~~~~~~~~n-p~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAEL-LPKEELQDILVYPN-PEDPNNPKIRTVPAGK 103 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHH-cChHhHHHheEeeC-CCcchHHHHHHHHHhc
Confidence 356899988888888777544 37999999999999999999974 22334577888766 3446778888888776
Q ss_pred ccc
Q 037627 255 KIN 257 (858)
Q Consensus 255 ~~~ 257 (858)
+..
T Consensus 104 G~~ 106 (637)
T PRK13765 104 GKQ 106 (637)
T ss_pred CHH
Confidence 654
No 446
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.98 E-value=0.12 Score=52.88 Aligned_cols=21 Identities=33% Similarity=0.687 Sum_probs=19.3
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 037627 201 VISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.|.++|++|+||||+|++++.
T Consensus 1 LIvl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 447
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.98 E-value=0.011 Score=59.02 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=20.9
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++.|+|+.|.||||+.+.++.
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHH
Confidence 467999999999999999988763
No 448
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=94.98 E-value=0.35 Score=47.19 Aligned_cols=20 Identities=20% Similarity=0.459 Sum_probs=18.8
Q ss_pred EEEEEecCcchHHHHHHHHh
Q 037627 201 VISVYGMGGLGKTTLARKLY 220 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~ 220 (858)
+++|+|+.|+|||||++.++
T Consensus 24 ~~~i~G~nGsGKStll~al~ 43 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 88999999999999999876
No 449
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.97 E-value=0.019 Score=56.77 Aligned_cols=25 Identities=48% Similarity=0.837 Sum_probs=22.5
Q ss_pred CCcEEEEEEecCcchHHHHHHHHhc
Q 037627 197 PRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 197 ~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
+...+|+|+|++|+||||||+.++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999986
No 450
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.97 E-value=0.22 Score=49.19 Aligned_cols=23 Identities=43% Similarity=0.528 Sum_probs=21.2
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|.|+.|+|||||++.++.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G 48 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAG 48 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45999999999999999999986
No 451
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.97 E-value=0.18 Score=55.85 Aligned_cols=58 Identities=19% Similarity=0.192 Sum_probs=34.4
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCC-CCHHHHHHHHHHhccc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQD-YDTKDLLLRIIRSFKI 256 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~ 256 (858)
.++++++|+.|+||||++.+++.....+.....+..++.... ....+-++...+.++.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGV 314 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGV 314 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCC
Confidence 469999999999999999999873222221223555554331 2233334444444443
No 452
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.96 E-value=0.043 Score=58.64 Aligned_cols=65 Identities=29% Similarity=0.297 Sum_probs=48.3
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHH
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLR 249 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 249 (858)
..++|++.....+...+..+. .+.+.|++|+|||+||+.++. ..... .+++.+.....+.++...
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~~----~vll~G~PG~gKT~la~~lA~--~l~~~---~~~i~~t~~l~p~d~~G~ 88 (329)
T COG0714 24 KVVVGDEEVIELALLALLAGG----HVLLEGPPGVGKTLLARALAR--ALGLP---FVRIQCTPDLLPSDLLGT 88 (329)
T ss_pred CeeeccHHHHHHHHHHHHcCC----CEEEECCCCccHHHHHHHHHH--HhCCC---eEEEecCCCCCHHHhcCc
Confidence 348998888888877776654 789999999999999999998 44433 455666666666655443
No 453
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.96 E-value=0.065 Score=56.47 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=19.0
Q ss_pred EEEEecCcchHHHHHHHHhcC
Q 037627 202 ISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 202 v~I~G~~GiGKTtLa~~~~~~ 222 (858)
++++|++|+||||+++.+...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999874
No 454
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.95 E-value=0.097 Score=56.88 Aligned_cols=94 Identities=16% Similarity=0.163 Sum_probs=50.5
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcccccc--------chhhhhccHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVL--------TRELEEMREE 269 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--------~~~~~~~~~~ 269 (858)
....++|.|..|+|||||++.++.. .+ ....++.....+.....++....+..-+.... .........-
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~--~~-~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARN--TD-ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCC--CC-CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 3468999999999999999999863 22 22233333333344445555554433221110 0000111111
Q ss_pred HHHHHHHHHh--cCceEEEEEEcCCCh
Q 037627 270 DLERYLHNCL--QGKSYLVVVDDAWQK 294 (858)
Q Consensus 270 ~~~~~l~~~l--~~~~~LlvlDd~~~~ 294 (858)
...-.+.+++ +++++||++||+...
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 1222344444 588999999998543
No 455
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.94 E-value=0.019 Score=56.86 Aligned_cols=25 Identities=36% Similarity=0.667 Sum_probs=22.8
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcC
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
+..+|+|.|.+|+||||||+.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999973
No 456
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.94 E-value=0.18 Score=49.52 Aligned_cols=24 Identities=42% Similarity=0.401 Sum_probs=21.5
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+++|.|..|.|||||.+.++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G 48 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAG 48 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 356999999999999999999876
No 457
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.94 E-value=0.2 Score=50.51 Aligned_cols=119 Identities=20% Similarity=0.213 Sum_probs=73.8
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhc
Q 037627 175 EGNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSF 254 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 254 (858)
.+.|+|-..-. ++...+.......+.+.|+|..|+|||+-++.+++. .+..+.+..+..++...++..+....
T Consensus 71 ~~~~l~tkt~r-~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~ 143 (297)
T COG2842 71 APDFLETKTVR-RIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAA 143 (297)
T ss_pred cccccccchhH-hHhhhhhhhhhcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHH
Confidence 34565543332 233333333333459999999999999999999972 22233346667777777777776655
Q ss_pred cccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh--hhHHHHHhhCCC
Q 037627 255 KINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK--ETWESLKRAFPD 306 (858)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~ 306 (858)
..... .........+...+.+..-+|++|+.+.. ..++.+......
T Consensus 144 ~~~~~------~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~ 191 (297)
T COG2842 144 FGATD------GTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDK 191 (297)
T ss_pred hcccc------hhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHh
Confidence 54322 12334455555566888889999999865 456666655443
No 458
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.93 E-value=0.099 Score=56.65 Aligned_cols=93 Identities=15% Similarity=0.181 Sum_probs=52.1
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCC-CHHHHHHHHHHhcccccc--------chhhhhccH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDY-DTKDLLLRIIRSFKINVL--------TRELEEMRE 268 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~--------~~~~~~~~~ 268 (858)
....++|.|..|+|||||++.++.. . ..+.++..-+++.. ...+++..++..-+.... .........
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~--~--~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRG--T--TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccC--C--CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 3468999999999999999999862 1 12455555555443 334455555433221110 000111111
Q ss_pred HHHHHHHHHHh--cCceEEEEEEcCCCh
Q 037627 269 EDLERYLHNCL--QGKSYLVVVDDAWQK 294 (858)
Q Consensus 269 ~~~~~~l~~~l--~~~~~LlvlDd~~~~ 294 (858)
-...-.+.+++ +++++|+++||+-..
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 12222333444 589999999998643
No 459
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.5 Score=46.21 Aligned_cols=46 Identities=24% Similarity=0.366 Sum_probs=36.2
Q ss_pred CceeeccccHHHHHHHHhcC-----------CCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 176 GNVVGFDDDVSKLLAKLLNK-----------EPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
+++=|-++.++++++.+.-+ -..++-|..||++|.|||-+|++.+.
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAa 227 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAA 227 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHH
Confidence 34567899999998887422 12456788999999999999999987
No 460
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.92 E-value=0.27 Score=52.33 Aligned_cols=60 Identities=25% Similarity=0.266 Sum_probs=39.3
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeC-CCCCHHHHHHHHHHhcccccc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVS-QDYDTKDLLLRIIRSFKINVL 259 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~ 259 (858)
.+.+|..+|..|.||||-|-+++.. .+.+=..+.-|++. ..+.+-+-++.+..+.+.+..
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~--lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f 159 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKY--LKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFF 159 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHH--HHHcCCceEEEecccCChHHHHHHHHHHHHcCCcee
Confidence 4679999999999999999999874 33321223333332 223455667777787776543
No 461
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.91 E-value=0.15 Score=59.35 Aligned_cols=88 Identities=25% Similarity=0.205 Sum_probs=48.6
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCC-CCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQD-YDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHN 277 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 277 (858)
.++++++|+.|+||||.+.+++...........+..++.... ....+.++...+.++.+.. ...+.+++.+.+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~----~~~~~~~l~~al~~ 260 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH----AVKDAADLRFALAA 260 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc----ccCCHHHHHHHHHH
Confidence 579999999999999999999874221211234555554322 1234455555555554332 11133444444443
Q ss_pred HhcCceEEEEEEcCC
Q 037627 278 CLQGKSYLVVVDDAW 292 (858)
Q Consensus 278 ~l~~~~~LlvlDd~~ 292 (858)
++++ =+|++|=.-
T Consensus 261 -~~~~-D~VLIDTAG 273 (767)
T PRK14723 261 -LGDK-HLVLIDTVG 273 (767)
T ss_pred -hcCC-CEEEEeCCC
Confidence 3333 366677664
No 462
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.91 E-value=0.014 Score=50.60 Aligned_cols=21 Identities=48% Similarity=0.830 Sum_probs=18.8
Q ss_pred EEEEecCcchHHHHHHHHhcC
Q 037627 202 ISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 202 v~I~G~~GiGKTtLa~~~~~~ 222 (858)
|.|+|++|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999998873
No 463
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.89 E-value=0.16 Score=51.52 Aligned_cols=97 Identities=15% Similarity=0.195 Sum_probs=55.9
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccc--cCCcceEEEEEeCCCC-CHHHHHHHHHHhcccccc--------chhhhhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDV--KNKFDRCAWVSVSQDY-DTKDLLLRIIRSFKINVL--------TRELEEM 266 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~--~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~--------~~~~~~~ 266 (858)
+.+.++|.|..|+|||+|+..+++.... +.+-+.++++-+++.. ...+++..+...-..... .......
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 3567899999999999999998874321 1224678888887654 445555555443111110 0000111
Q ss_pred cHHHHHHHHHHHh---cCceEEEEEEcCCCh
Q 037627 267 REEDLERYLHNCL---QGKSYLVVVDDAWQK 294 (858)
Q Consensus 267 ~~~~~~~~l~~~l---~~~~~LlvlDd~~~~ 294 (858)
..-...-.+.+++ .++++|+++||+-..
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 1111223344444 278999999998543
No 464
>PTZ00301 uridine kinase; Provisional
Probab=94.88 E-value=0.019 Score=56.29 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=21.1
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 46999999999999999998876
No 465
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=0.3 Score=48.64 Aligned_cols=45 Identities=20% Similarity=0.323 Sum_probs=35.0
Q ss_pred ceeeccccHHHHHHHHhcC-----------CCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 177 NVVGFDDDVSKLLAKLLNK-----------EPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 177 ~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
++=|-+..+++|.+...-+ -..++-|.+||.+|.|||-||+++++
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVAN 241 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVAN 241 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhc
Confidence 4557888888888876422 12356788899999999999999998
No 466
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.86 E-value=0.031 Score=55.26 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=20.8
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48999999999999999999873
No 467
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.85 E-value=0.033 Score=55.50 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=19.5
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 037627 201 VISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.|.|.|++|+||||+|+.+++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999987
No 468
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.85 E-value=0.044 Score=49.38 Aligned_cols=85 Identities=14% Similarity=0.226 Sum_probs=43.7
Q ss_pred hhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEecccCCCCChhhhhccCCccEEEEecccCCCCCccccCCCCC
Q 037627 697 KSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGKIEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPN 776 (858)
Q Consensus 697 ~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 776 (858)
..+.++++|+.+.+.. ....+ ....|..+++|+.+.+.+++..++...+..+++|+.+.+.+ .+.......|..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I-~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKI-GENAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE--TTTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEe-Chhhcccccccccccccccccccceeeeecccccccccccc-ccccccccccccccc
Confidence 4556666777766653 23222 23446666677777777766666666665556777777755 333334456666777
Q ss_pred CCeeEeec
Q 037627 777 LTILDLGL 784 (858)
Q Consensus 777 L~~L~L~~ 784 (858)
|+.+++..
T Consensus 83 l~~i~~~~ 90 (129)
T PF13306_consen 83 LKNIDIPS 90 (129)
T ss_dssp ECEEEETT
T ss_pred ccccccCc
Confidence 77777754
No 469
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.82 E-value=0.25 Score=49.80 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=21.5
Q ss_pred cEEEEEEecCcchHHHHHHHHhcC
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
..+++|.|+.|.|||||++.++..
T Consensus 29 G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 29 GETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999863
No 470
>PRK05922 type III secretion system ATPase; Validated
Probab=94.80 E-value=0.15 Score=55.39 Aligned_cols=93 Identities=12% Similarity=0.152 Sum_probs=50.3
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCC-CCCHHHHHHHHHHhcccccc--------chhhhhccH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQ-DYDTKDLLLRIIRSFKINVL--------TRELEEMRE 268 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~--------~~~~~~~~~ 268 (858)
....++|.|..|+|||||++.++... ..+..+.+-++. .....+.+.+.......... .........
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 34579999999999999999998631 123333333333 33334455454433322110 000011111
Q ss_pred HHHHHHHHHHh--cCceEEEEEEcCCCh
Q 037627 269 EDLERYLHNCL--QGKSYLVVVDDAWQK 294 (858)
Q Consensus 269 ~~~~~~l~~~l--~~~~~LlvlDd~~~~ 294 (858)
....-.+.+++ +++++|+++|++-..
T Consensus 232 ~~~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 232 GRAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 12223344444 588999999999643
No 471
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=94.77 E-value=0.39 Score=49.14 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=21.2
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|.|+.|+|||||++.++.
T Consensus 38 Ge~~~I~G~NGsGKSTLlk~l~G 60 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAG 60 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45999999999999999999986
No 472
>PRK08149 ATP synthase SpaL; Validated
Probab=94.76 E-value=0.14 Score=55.60 Aligned_cols=93 Identities=13% Similarity=0.173 Sum_probs=51.3
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeC-CCCCHHHHHHHHHHhccccc--------cchhhhhccH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVS-QDYDTKDLLLRIIRSFKINV--------LTRELEEMRE 268 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~--------~~~~~~~~~~ 268 (858)
+...++|.|..|+|||||+..++... .-+.++...+. ...+..++..+......... ..........
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 35689999999999999999998632 11233333333 23345555555555322111 0001111111
Q ss_pred HHHHHHHHHHh--cCceEEEEEEcCCCh
Q 037627 269 EDLERYLHNCL--QGKSYLVVVDDAWQK 294 (858)
Q Consensus 269 ~~~~~~l~~~l--~~~~~LlvlDd~~~~ 294 (858)
......+.+++ +++++||++||+-..
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 12223333333 589999999998543
No 473
>PRK06217 hypothetical protein; Validated
Probab=94.75 E-value=0.042 Score=53.08 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=20.3
Q ss_pred EEEEEecCcchHHHHHHHHhcC
Q 037627 201 VISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
.|+|.|.+|+||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999974
No 474
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.74 E-value=0.34 Score=52.82 Aligned_cols=123 Identities=20% Similarity=0.281 Sum_probs=64.3
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcccccc--------chhhhhccHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVL--------TRELEEMREE 269 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--------~~~~~~~~~~ 269 (858)
....++|.|..|+|||||++.++... + ....++...-.+.....+.+...+..-+.... ..........
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~--~-~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNA--K-ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC--C-CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 35688999999999999999998732 1 12234433333445666666665554322110 0001111112
Q ss_pred HHHHHHHHHh--cCceEEEEEEcCCChh-hHHHHHhh---CCCCCCCcEEEEEeCchhHHhh
Q 037627 270 DLERYLHNCL--QGKSYLVVVDDAWQKE-TWESLKRA---FPDNKNGSRVIITTRIKEVAER 325 (858)
Q Consensus 270 ~~~~~l~~~l--~~~~~LlvlDd~~~~~-~~~~l~~~---l~~~~~gs~ilvTtR~~~~~~~ 325 (858)
.....+.+++ +++++||++|++-... ...++... .|. .|--..+.|..+.+...
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslTr~a~A~reisl~~~e~p~--~G~~~~~~s~l~~L~ER 291 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPI--GGKTLLMESYMKKLLER 291 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCC--CCeeeeeeccchhHHHH
Confidence 2223333333 4789999999986542 23343332 232 14444454444444433
No 475
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.73 E-value=0.11 Score=54.68 Aligned_cols=37 Identities=30% Similarity=0.450 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcC
Q 037627 186 SKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 186 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
.++.+.+....+...+|+|.|.+|+|||||+..+...
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4555555443456789999999999999999998763
No 476
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.73 E-value=0.12 Score=52.86 Aligned_cols=90 Identities=16% Similarity=0.207 Sum_probs=48.3
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcccccc---chhhhhccHHHHHHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVL---TRELEEMREEDLERY 274 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~~~~~ 274 (858)
+..++.|.|.+|+|||||+..+.. ..+.... ++.+.-. ..+..+ .+.+...+.+.. ....-..+...+...
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~~-~~VI~gD-~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~A 176 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLM--RLKDSVP-CAVIEGD-QQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIADA 176 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HhccCCC-EEEECCC-cCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHHH
Confidence 578999999999999999999987 3333332 3333211 122222 122333333221 000111223345555
Q ss_pred HHHHhcCceEEEEEEcCCC
Q 037627 275 LHNCLQGKSYLVVVDDAWQ 293 (858)
Q Consensus 275 l~~~l~~~~~LlvlDd~~~ 293 (858)
+........-++|++++-.
T Consensus 177 l~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 177 APRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHhhcCCcEEEEECCCC
Confidence 5554444446788999864
No 477
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.73 E-value=0.09 Score=58.16 Aligned_cols=126 Identities=19% Similarity=0.302 Sum_probs=65.3
Q ss_pred HHHHHHhcCCCCcEEEEEEecCcchHHH-HHHHHhcCccccCCcceEEEEEeCCCC--CHHHHHHHHHHhcccccc----
Q 037627 187 KLLAKLLNKEPRRFVISVYGMGGLGKTT-LARKLYHNNDVKNKFDRCAWVSVSQDY--DTKDLLLRIIRSFKINVL---- 259 (858)
Q Consensus 187 ~l~~~L~~~~~~~~vv~I~G~~GiGKTt-La~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~---- 259 (858)
+|+..+..+ .||.|+|..|.|||| |++.++.+ .|..---|-+.++. .+-.+.+.+..+++....
T Consensus 363 ~ll~~ir~n----~vvvivgETGSGKTTQl~QyL~ed-----GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VG 433 (1042)
T KOG0924|consen 363 QLLSVIREN----QVVVIVGETGSGKTTQLAQYLYED-----GYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVG 433 (1042)
T ss_pred HHHHHHhhC----cEEEEEecCCCCchhhhHHHHHhc-----ccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccc
Confidence 444444433 599999999999997 55555553 22111133444443 344556677777654321
Q ss_pred ----chhh-------hhccHH-HHHHHHHHHhcCceEEEEEEcCCChhhHHH----HHhhCCCCCCCcEEEEEeCchh
Q 037627 260 ----TREL-------EEMREE-DLERYLHNCLQGKSYLVVVDDAWQKETWES----LKRAFPDNKNGSRVIITTRIKE 321 (858)
Q Consensus 260 ----~~~~-------~~~~~~-~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~----l~~~l~~~~~gs~ilvTtR~~~ 321 (858)
-++. .-+... -+.+.+....-.+=-+||+|.+++...-.+ +...........|+||||-.-+
T Consensus 434 YsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~ 511 (1042)
T KOG0924|consen 434 YSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMD 511 (1042)
T ss_pred eEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeecccc
Confidence 0000 111111 122333333334456899999986532111 2222223344789999986543
No 478
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=94.71 E-value=0.043 Score=57.35 Aligned_cols=152 Identities=18% Similarity=0.259 Sum_probs=77.4
Q ss_pred eeeccccHHHHHHHHhcC---------------CCCcEEEEEEecCcchHHHHHHHHhcCcccc--CCc---ceEEEEE-
Q 037627 178 VVGFDDDVSKLLAKLLNK---------------EPRRFVISVYGMGGLGKTTLARKLYHNNDVK--NKF---DRCAWVS- 236 (858)
Q Consensus 178 ~vGr~~~~~~l~~~L~~~---------------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~--~~f---~~~~wv~- 236 (858)
..|-..+...|.+.+-.. ....-+++|+|..|+||||+.+.+....... ..| .+.+-+.
T Consensus 373 ~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~ 452 (593)
T COG2401 373 IKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPK 452 (593)
T ss_pred cccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccc
Confidence 345566677777665321 1234689999999999999999887521110 011 1111111
Q ss_pred ------e----CCCCCHHHHHHHHHHhccc-------------ccc---chhhhhc-cHHHHHHHHHHHhcCceEEEEEE
Q 037627 237 ------V----SQDYDTKDLLLRIIRSFKI-------------NVL---TRELEEM-REEDLERYLHNCLQGKSYLVVVD 289 (858)
Q Consensus 237 ------~----~~~~~~~~~~~~i~~~l~~-------------~~~---~~~~~~~-~~~~~~~~l~~~l~~~~~LlvlD 289 (858)
+ ...++...++.++.+..+. ... .....+. +.+.-...|...+.+++-+++.|
T Consensus 453 nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iD 532 (593)
T COG2401 453 NTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLID 532 (593)
T ss_pred cchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhh
Confidence 1 1112222344444333322 211 0011111 12233456777788888899999
Q ss_pred cCCCh---hhHHHHHhhCCC--CCCCcEEEEEeCchhHHhhcCCC
Q 037627 290 DAWQK---ETWESLKRAFPD--NKNGSRVIITTRIKEVAERSDEN 329 (858)
Q Consensus 290 d~~~~---~~~~~l~~~l~~--~~~gs~ilvTtR~~~~~~~~~~~ 329 (858)
.+... .....+...+.. ...|+.+++.|+.+++.....+.
T Consensus 533 EF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD 577 (593)
T COG2401 533 EFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPD 577 (593)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCc
Confidence 98632 122222222222 12466677777778877766543
No 479
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.70 E-value=0.031 Score=58.14 Aligned_cols=46 Identities=24% Similarity=0.431 Sum_probs=40.8
Q ss_pred CceeeccccHHHHHHHHhcC----CCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 176 GNVVGFDDDVSKLLAKLLNK----EPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..|+|.++.++++++.+... +...+++.+.|+.|.||||||..+.+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999998654 45678999999999999999999876
No 480
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.68 E-value=0.37 Score=47.91 Aligned_cols=25 Identities=40% Similarity=0.327 Sum_probs=22.0
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcC
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
...+++|.|..|.|||||++.++..
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999863
No 481
>PRK09099 type III secretion system ATPase; Provisional
Probab=94.66 E-value=0.15 Score=55.80 Aligned_cols=94 Identities=11% Similarity=0.156 Sum_probs=52.4
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcccccc--------chhhhhccHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVL--------TRELEEMREE 269 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--------~~~~~~~~~~ 269 (858)
+...++|.|..|+|||||++.++..... -..+++..-.+.....++...+...-+.... ..........
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~---d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQC---DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 4568999999999999999999863221 1234444444444555555555443221110 0001111111
Q ss_pred HHHHHHHHHh--cCceEEEEEEcCCCh
Q 037627 270 DLERYLHNCL--QGKSYLVVVDDAWQK 294 (858)
Q Consensus 270 ~~~~~l~~~l--~~~~~LlvlDd~~~~ 294 (858)
...-.+.+++ +++++|+++|++-..
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 2222333444 588999999998643
No 482
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=94.66 E-value=0.3 Score=48.89 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.6
Q ss_pred cEEEEEEecCcchHHHHHHHHhcC
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
..+++|.|..|.|||||++.++..
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999999863
No 483
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=0.28 Score=45.93 Aligned_cols=23 Identities=39% Similarity=0.436 Sum_probs=20.7
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+.|.|+.|+|||||.+.++-
T Consensus 28 Ge~~~i~G~NG~GKTtLLRilaG 50 (209)
T COG4133 28 GEALQITGPNGAGKTTLLRILAG 50 (209)
T ss_pred CCEEEEECCCCCcHHHHHHHHHc
Confidence 34899999999999999999985
No 484
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.63 E-value=0.042 Score=52.70 Aligned_cols=21 Identities=48% Similarity=0.719 Sum_probs=19.7
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 037627 201 VISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~ 221 (858)
+|+|.|.+|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 485
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.63 E-value=0.1 Score=57.20 Aligned_cols=95 Identities=18% Similarity=0.225 Sum_probs=56.5
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCC-CCHHHHHHHHHHhccccc--------cchhhhhccH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQD-YDTKDLLLRIIRSFKINV--------LTRELEEMRE 268 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~--------~~~~~~~~~~ 268 (858)
+...++|.|.+|+|||||+.+++.... +.+-+.++++-+++. ....+++..+...-.... ..........
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 456899999999999999998887422 224467777766543 344555666554321110 0001111112
Q ss_pred HHHHHHHHHHh---cCceEEEEEEcCCC
Q 037627 269 EDLERYLHNCL---QGKSYLVVVDDAWQ 293 (858)
Q Consensus 269 ~~~~~~l~~~l---~~~~~LlvlDd~~~ 293 (858)
-...-.+.+++ .++++|+++|++-.
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 22334455555 37899999999954
No 486
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.63 E-value=0.12 Score=55.78 Aligned_cols=23 Identities=39% Similarity=0.496 Sum_probs=20.5
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...++|+|+.|.||||||+.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 45899999999999999998853
No 487
>PRK03839 putative kinase; Provisional
Probab=94.59 E-value=0.022 Score=54.94 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=19.7
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 037627 201 VISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.|.|.|++|+||||+|+.+++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999998
No 488
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=94.58 E-value=0.47 Score=53.66 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=36.0
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..++|......++.+.+.........+.|.|..|+||+++|+.+..
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~ 179 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHR 179 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHH
Confidence 3588888777777777654433445788999999999999999986
No 489
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.53 E-value=0.38 Score=48.86 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=21.1
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|.|+.|.|||||.+.++-
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~G 50 (242)
T TIGR03411 28 GELRVIIGPNGAGKTTMMDVITG 50 (242)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999986
No 490
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.52 E-value=0.31 Score=49.76 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.6
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+++|+|+.|.|||||.+.++-
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~G 48 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAG 48 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 356999999999999999999986
No 491
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.50 E-value=0.19 Score=56.53 Aligned_cols=129 Identities=18% Similarity=0.203 Sum_probs=0.0
Q ss_pred EEEEecCcchHHHHHHHHhcCccccCCcceEE--------------------------EEEeCCCCCHHHHHHHHHHhcc
Q 037627 202 ISVYGMGGLGKTTLARKLYHNNDVKNKFDRCA--------------------------WVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 202 v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~--------------------------wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
|+|+|+.|+|||||.+.+.. ..... .+.+ |+.-..+...+..++..+..++
T Consensus 351 iaiiG~NG~GKSTLlk~l~g--~~~~~-~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 351 IAIVGPNGAGKSTLLKLLAG--ELGPL-SGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred EEEECCCCCCHHHHHHHHhh--hcccC-CceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Q ss_pred cccc--chhhhhccHHHHHHHHHHHh-cCceEEEEEEcCC---ChhhHHHHHhhCCCCCCCcEEEEEeCchhHHhhcCCC
Q 037627 256 INVL--TRELEEMREEDLERYLHNCL-QGKSYLVVVDDAW---QKETWESLKRAFPDNKNGSRVIITTRIKEVAERSDEN 329 (858)
Q Consensus 256 ~~~~--~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDd~~---~~~~~~~l~~~l~~~~~gs~ilvTtR~~~~~~~~~~~ 329 (858)
.... .......+-.+..+.....+ ..++=+||||+-. |.+..+.+...+.... |+ ||+.|.++........
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~-Gt-vl~VSHDr~Fl~~va~- 504 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE-GT-VLLVSHDRYFLDRVAT- 504 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC-Ce-EEEEeCCHHHHHhhcc-
Q ss_pred CceeecCC
Q 037627 330 AYAHKLRF 337 (858)
Q Consensus 330 ~~~~~l~~ 337 (858)
.++.+.+
T Consensus 505 -~i~~~~~ 511 (530)
T COG0488 505 -RIWLVED 511 (530)
T ss_pred -eEEEEcC
No 492
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.49 E-value=0.046 Score=52.07 Aligned_cols=22 Identities=45% Similarity=0.611 Sum_probs=20.0
Q ss_pred EEEEEecCcchHHHHHHHHhcC
Q 037627 201 VISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
.|.|.|++|+||||+|+.+++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999983
No 493
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.48 E-value=0.18 Score=51.98 Aligned_cols=80 Identities=19% Similarity=0.186 Sum_probs=42.7
Q ss_pred CCcEEEEEEecCcchHHHHHHHHhcCccccCCc--ceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHH
Q 037627 197 PRRFVISVYGMGGLGKTTLARKLYHNNDVKNKF--DRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERY 274 (858)
Q Consensus 197 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 274 (858)
....+|+|.|..|+||||+|+.+.. ...... ..+..++....+........ .+........+..+.+.+...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~--ll~~~~~~g~V~vi~~D~f~~~~~~l~~----~g~~~~~g~P~s~D~~~l~~~ 133 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA--LLSRWPEHRKVELITTDGFLHPNQVLKE----RNLMKKKGFPESYDMHRLVKF 133 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCceEEEecccccccHHHHHH----cCCccccCCChhccHHHHHHH
Confidence 3567999999999999999987764 222111 13455555544433333322 111110001133455566666
Q ss_pred HHHHhcCc
Q 037627 275 LHNCLQGK 282 (858)
Q Consensus 275 l~~~l~~~ 282 (858)
+.....++
T Consensus 134 L~~Lk~g~ 141 (290)
T TIGR00554 134 LSDLKSGK 141 (290)
T ss_pred HHHHHCCC
Confidence 66655444
No 494
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.48 E-value=0.026 Score=53.80 Aligned_cols=24 Identities=46% Similarity=0.616 Sum_probs=22.0
Q ss_pred cEEEEEEecCcchHHHHHHHHhcC
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
..+|+|-||-|+||||||+.++++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999984
No 495
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.47 E-value=0.026 Score=54.10 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=21.8
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
....|.|+|++|+||||+|+.+++
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999998
No 496
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.47 E-value=0.17 Score=49.97 Aligned_cols=26 Identities=42% Similarity=0.652 Sum_probs=22.4
Q ss_pred CCcEEEEEEecCcchHHHHHHHHhcC
Q 037627 197 PRRFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 197 ~~~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
.+..++.++||+|.||||..+.+..+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHH
Confidence 34568888999999999999999874
No 497
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.45 E-value=0.075 Score=61.28 Aligned_cols=76 Identities=13% Similarity=0.156 Sum_probs=52.8
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccC-CcceEEEEEeCCCCCHHHHHHHHHHh
Q 037627 175 EGNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKN-KFDRCAWVSVSQDYDTKDLLLRIIRS 253 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~ 253 (858)
-++++|.++.++.+...+... +.+.++|++|+||||+|+.+++ .... .|..++++.-.. .+..++++.++..
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~--~l~~~~~~~~~~~~n~~-~~~~~~~~~v~~~ 89 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAE--LLPDEELEDILVYPNPE-DPNMPRIVEVPAG 89 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHH--HcCchhheeEEEEeCCC-CCchHHHHHHHHh
Confidence 356899998888877777544 2667999999999999999997 3332 343344443332 3556678888877
Q ss_pred cccc
Q 037627 254 FKIN 257 (858)
Q Consensus 254 l~~~ 257 (858)
++..
T Consensus 90 ~g~~ 93 (608)
T TIGR00764 90 EGRE 93 (608)
T ss_pred hchH
Confidence 7654
No 498
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.45 E-value=0.4 Score=48.61 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.7
Q ss_pred cEEEEEEecCcchHHHHHHHHhcC
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
..+++|.|..|.|||||++.++..
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 29 GKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred CCEEEEEeCCCCCHHHHHHHHhcc
Confidence 469999999999999999999863
No 499
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.45 E-value=0.15 Score=50.76 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=19.4
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 037627 201 VISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.|.|+|++|+||||+|+.++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999986
No 500
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.43 E-value=0.029 Score=54.51 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.9
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..++++|.|++|+||||+|+.++.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999986
Done!