Query 037627
Match_columns 858
No_of_seqs 684 out of 4075
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 04:03:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037627.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037627hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 7E-45 2.4E-49 415.6 26.6 319 179-515 131-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 1.9E-37 6.5E-42 394.2 26.8 321 169-513 117-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 5.5E-37 1.9E-41 351.4 19.2 289 176-506 128-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 6.4E-35 2.2E-39 339.1 25.6 311 173-510 121-449 (591)
5 4fmz_A Internalin; leucine ric 99.9 1.7E-23 5.7E-28 226.3 20.0 294 528-857 44-343 (347)
6 4ecn_A Leucine-rich repeat pro 99.9 6.3E-24 2.2E-28 251.5 17.5 283 561-857 494-816 (876)
7 1o6v_A Internalin A; bacterial 99.9 3.8E-23 1.3E-27 232.6 21.4 270 561-857 93-385 (466)
8 3vq2_A TLR4, TOLL-like recepto 99.9 2.4E-23 8.1E-28 243.2 20.2 157 697-857 370-531 (606)
9 3rgz_A Protein brassinosteroid 99.9 1.5E-23 5.3E-28 250.4 18.0 217 561-788 297-551 (768)
10 4eco_A Uncharacterized protein 99.9 1.2E-23 4.1E-28 245.4 16.2 282 561-857 252-576 (636)
11 4eco_A Uncharacterized protein 99.9 1E-23 3.4E-28 246.0 15.5 278 561-856 209-545 (636)
12 2id5_A Lingo-1, leucine rich r 99.9 3.3E-23 1.1E-27 234.3 19.2 281 561-857 35-330 (477)
13 2z7x_B TOLL-like receptor 1, v 99.9 3.7E-23 1.3E-27 236.7 19.7 304 527-857 20-478 (520)
14 3t6q_A CD180 antigen; protein- 99.9 3.3E-23 1.1E-27 242.0 18.2 109 724-834 274-386 (606)
15 3o6n_A APL1; leucine-rich repe 99.9 3.8E-23 1.3E-27 227.2 17.2 295 528-857 45-349 (390)
16 3rgz_A Protein brassinosteroid 99.9 3E-23 1E-27 247.9 16.4 265 589-857 268-548 (768)
17 2id5_A Lingo-1, leucine rich r 99.9 1.1E-22 3.7E-27 230.0 20.0 291 526-835 30-331 (477)
18 4ecn_A Leucine-rich repeat pro 99.9 2.2E-23 7.6E-28 246.9 14.8 282 561-857 518-837 (876)
19 3bz5_A Internalin-J, INLJ; leu 99.9 3.1E-22 1.1E-26 223.1 22.8 288 528-857 42-349 (457)
20 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.7E-22 5.9E-27 233.1 21.0 304 527-857 51-507 (562)
21 3oja_B Anopheles plasmodium-re 99.9 7.4E-23 2.5E-27 237.4 16.9 269 561-857 78-355 (597)
22 3v47_A TOLL-like receptor 5B a 99.9 1.4E-23 4.8E-28 236.0 10.4 126 728-857 275-405 (455)
23 1o6v_A Internalin A; bacterial 99.9 3.7E-22 1.3E-26 224.5 20.4 254 561-841 115-392 (466)
24 4fmz_A Internalin; leucine ric 99.9 3.5E-22 1.2E-26 215.9 18.5 269 561-857 47-321 (347)
25 3t6q_A CD180 antigen; protein- 99.9 1.8E-22 6.1E-27 235.8 16.5 284 561-857 257-557 (606)
26 2z63_A TOLL-like receptor 4, v 99.9 4E-22 1.4E-26 231.1 18.8 157 697-857 367-528 (570)
27 3bz5_A Internalin-J, INLJ; leu 99.9 1.3E-21 4.3E-26 218.2 20.4 257 561-853 45-316 (457)
28 3v47_A TOLL-like receptor 5B a 99.9 3E-22 1E-26 225.1 14.7 296 526-840 28-412 (455)
29 1xku_A Decorin; proteoglycan, 99.9 2.3E-21 7.9E-26 207.6 19.0 277 561-858 34-330 (330)
30 3vq2_A TLR4, TOLL-like recepto 99.9 6.6E-22 2.3E-26 230.9 15.5 201 651-857 345-555 (606)
31 4fcg_A Uncharacterized protein 99.9 2.5E-21 8.7E-26 206.3 18.4 226 561-857 84-311 (328)
32 2z7x_B TOLL-like receptor 1, v 99.9 1.1E-21 3.7E-26 224.5 16.4 117 561-690 24-150 (520)
33 2z81_A CD282 antigen, TOLL-lik 99.9 1.9E-21 6.5E-26 224.2 18.4 154 700-857 331-507 (549)
34 2ft3_A Biglycan; proteoglycan, 99.9 1.4E-21 4.8E-26 209.4 15.6 274 561-857 36-330 (332)
35 3j0a_A TOLL-like receptor 5; m 99.9 2.4E-21 8.3E-26 233.9 19.4 173 526-713 22-214 (844)
36 3j0a_A TOLL-like receptor 5; m 99.9 3.5E-21 1.2E-25 232.6 20.7 281 561-855 27-370 (844)
37 1ogq_A PGIP-2, polygalacturona 99.9 4.4E-22 1.5E-26 211.0 11.2 218 561-789 53-282 (313)
38 1ziw_A TOLL-like receptor 3; i 99.9 6.6E-21 2.3E-25 225.6 21.9 294 526-834 23-415 (680)
39 2z81_A CD282 antigen, TOLL-lik 99.9 2E-21 6.7E-26 224.1 15.6 284 560-857 28-420 (549)
40 4fcg_A Uncharacterized protein 99.9 3.1E-21 1E-25 205.7 15.6 231 528-834 81-311 (328)
41 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.1E-21 1.4E-25 221.6 16.9 278 561-857 55-483 (562)
42 3o6n_A APL1; leucine-rich repe 99.8 3.7E-21 1.3E-25 211.2 14.3 278 553-857 40-328 (390)
43 2ft3_A Biglycan; proteoglycan, 99.8 6.1E-21 2.1E-25 204.4 14.2 255 561-835 57-331 (332)
44 2z80_A TOLL-like receptor 2, v 99.8 6.4E-21 2.2E-25 206.2 13.3 230 585-835 71-312 (353)
45 3oja_B Anopheles plasmodium-re 99.8 7.7E-21 2.6E-25 220.4 14.3 280 551-857 44-334 (597)
46 1ogq_A PGIP-2, polygalacturona 99.8 4.4E-21 1.5E-25 203.2 11.2 241 590-838 50-305 (313)
47 1ziw_A TOLL-like receptor 3; i 99.8 3.6E-20 1.2E-24 219.3 18.9 103 586-689 45-156 (680)
48 3g06_A SSPH2 (leucine-rich rep 99.8 1.2E-19 4.1E-24 208.0 20.7 258 530-843 42-304 (622)
49 1xku_A Decorin; proteoglycan, 99.8 1.4E-19 4.8E-24 193.7 19.3 255 561-835 55-330 (330)
50 2z63_A TOLL-like receptor 4, v 99.8 4.8E-20 1.6E-24 213.6 17.0 150 526-691 26-190 (570)
51 3zyi_A Leucine-rich repeat-con 99.8 1.5E-19 5.1E-24 202.4 17.1 205 584-811 93-301 (452)
52 3zyj_A Leucine-rich repeat-con 99.8 1.7E-19 5.7E-24 201.2 16.8 218 561-810 67-289 (440)
53 1jl5_A Outer protein YOPM; leu 99.8 4.5E-19 1.5E-23 197.4 19.7 262 527-835 90-368 (454)
54 2z66_A Variable lymphocyte rec 99.8 1.2E-19 4.2E-24 191.9 13.1 207 581-810 42-258 (306)
55 3o53_A Protein LRIM1, AGAP0063 99.8 4.1E-21 1.4E-25 204.1 0.8 243 587-838 31-276 (317)
56 2z66_A Variable lymphocyte rec 99.8 2E-19 7E-24 190.3 12.8 229 526-789 26-262 (306)
57 1ozn_A Reticulon 4 receptor; N 99.8 1.4E-19 4.9E-24 189.3 11.0 203 581-788 25-238 (285)
58 1jl5_A Outer protein YOPM; leu 99.8 2.6E-18 8.9E-23 191.2 19.5 243 561-846 156-421 (454)
59 3g06_A SSPH2 (leucine-rich rep 99.8 1.6E-18 5.5E-23 198.7 17.1 247 561-857 43-294 (622)
60 3oja_A Leucine-rich immune mol 99.8 4.7E-20 1.6E-24 207.4 3.8 233 591-833 35-271 (487)
61 3zyj_A Leucine-rich repeat-con 99.8 1.1E-18 3.8E-23 194.5 14.4 240 561-835 46-290 (440)
62 4g8a_A TOLL-like receptor 4; l 99.8 2.8E-18 9.5E-23 201.6 18.3 128 727-857 444-577 (635)
63 1wwl_A Monocyte differentiatio 99.8 3.5E-19 1.2E-23 188.7 8.0 216 561-789 66-310 (312)
64 2z80_A TOLL-like receptor 2, v 99.8 1.1E-18 3.7E-23 188.7 12.0 245 527-789 51-315 (353)
65 3o53_A Protein LRIM1, AGAP0063 99.8 4.5E-20 1.5E-24 196.0 0.9 256 561-838 37-300 (317)
66 3zyi_A Leucine-rich repeat-con 99.8 2.3E-18 8E-23 192.7 14.7 240 561-835 57-301 (452)
67 1wwl_A Monocyte differentiatio 99.7 2.1E-19 7.2E-24 190.4 3.3 176 653-835 118-307 (312)
68 3qfl_A MLA10; coiled-coil, (CC 99.7 3E-19 1E-23 154.8 3.1 82 4-85 1-84 (115)
69 2o6q_A Variable lymphocyte rec 99.7 2E-17 6.8E-22 171.2 17.4 196 561-788 19-218 (270)
70 2z62_A TOLL-like receptor 4, v 99.7 4.6E-18 1.6E-22 176.9 11.8 198 561-789 31-238 (276)
71 2qen_A Walker-type ATPase; unk 99.7 2E-16 6.7E-21 170.9 24.1 294 173-507 9-349 (350)
72 1ozn_A Reticulon 4 receptor; N 99.7 1.5E-17 5.1E-22 173.9 13.8 244 593-843 14-268 (285)
73 2xwt_C Thyrotropin receptor; s 99.7 2E-17 6.8E-22 167.9 13.9 201 581-811 25-237 (239)
74 3oja_A Leucine-rich immune mol 99.7 7.7E-18 2.6E-22 189.4 11.6 230 612-854 33-269 (487)
75 1p9a_G Platelet glycoprotein I 99.7 4.2E-17 1.4E-21 170.2 15.9 198 586-788 6-208 (290)
76 4g8a_A TOLL-like receptor 4; l 99.7 7E-17 2.4E-21 189.7 18.5 109 724-835 465-578 (635)
77 1h6u_A Internalin H; cell adhe 99.7 2.7E-17 9.3E-22 173.5 13.4 189 561-791 44-233 (308)
78 3rfs_A Internalin B, repeat mo 99.7 2E-17 6.7E-22 171.4 11.4 178 586-787 37-217 (272)
79 4ay9_X Follicle-stimulating ho 99.7 4.2E-17 1.4E-21 175.7 14.1 236 561-833 12-255 (350)
80 3rfs_A Internalin B, repeat mo 99.7 1.5E-17 5.1E-22 172.3 9.9 231 589-851 18-250 (272)
81 2fna_A Conserved hypothetical 99.7 4.1E-16 1.4E-20 168.9 21.2 294 173-506 10-356 (357)
82 1w5s_A Origin recognition comp 99.7 2.1E-16 7.3E-21 174.7 18.8 311 174-501 20-386 (412)
83 2o6q_A Variable lymphocyte rec 99.7 2.1E-16 7.2E-21 163.5 16.6 197 591-811 17-216 (270)
84 1z7x_W Ribonuclease inhibitor; 99.7 1.4E-19 4.9E-24 203.6 -13.2 103 751-855 313-438 (461)
85 1h6u_A Internalin H; cell adhe 99.7 5.2E-16 1.8E-20 163.6 14.5 192 528-767 41-233 (308)
86 2xwt_C Thyrotropin receptor; s 99.7 3.2E-16 1.1E-20 159.0 12.2 191 561-785 34-236 (239)
87 2z62_A TOLL-like receptor 4, v 99.7 4.6E-16 1.6E-20 161.7 13.3 204 526-766 26-239 (276)
88 4glp_A Monocyte differentiatio 99.6 2.5E-16 8.6E-21 166.5 11.0 220 591-835 65-305 (310)
89 2ast_B S-phase kinase-associat 99.6 1.5E-17 5.3E-22 178.5 -1.0 247 561-845 50-315 (336)
90 3m19_A Variable lymphocyte rec 99.6 2.2E-15 7.4E-20 154.0 14.9 175 561-789 17-193 (251)
91 1z7x_W Ribonuclease inhibitor; 99.6 1.7E-18 5.7E-23 194.9 -9.8 268 561-838 31-354 (461)
92 1p9a_G Platelet glycoprotein I 99.6 1.9E-15 6.5E-20 157.6 13.9 195 609-811 6-206 (290)
93 4ay9_X Follicle-stimulating ho 99.6 1.4E-15 4.9E-20 163.6 12.9 242 586-857 6-256 (350)
94 4glp_A Monocyte differentiatio 99.6 1.2E-15 4.2E-20 161.3 11.8 196 589-789 90-308 (310)
95 2ca6_A RAN GTPase-activating p 99.6 1.2E-17 4.1E-22 182.8 -5.0 241 581-835 23-314 (386)
96 3ogk_B Coronatine-insensitive 99.6 3.2E-17 1.1E-21 190.7 -2.5 85 750-835 435-524 (592)
97 2v1u_A Cell division control p 99.6 1.1E-13 3.9E-18 151.4 20.7 294 174-487 17-352 (387)
98 1h6t_A Internalin B; cell adhe 99.5 8.4E-15 2.9E-19 152.9 10.3 172 587-790 43-215 (291)
99 3ogk_B Coronatine-insensitive 99.5 1.5E-16 5.2E-21 185.0 -3.4 269 582-855 184-524 (592)
100 2ast_B S-phase kinase-associat 99.5 1.5E-15 5.1E-20 162.9 4.4 73 561-642 73-147 (336)
101 3m19_A Variable lymphocyte rec 99.5 3.6E-14 1.2E-18 144.9 14.5 154 561-766 38-194 (251)
102 1m9s_A Internalin B; cell inva 99.5 1.2E-14 4.2E-19 166.4 11.8 168 586-788 39-210 (605)
103 2qby_B CDC6 homolog 3, cell di 99.5 9E-14 3.1E-18 152.0 17.6 294 175-487 19-340 (384)
104 3goz_A Leucine-rich repeat-con 99.5 1.9E-15 6.7E-20 163.5 4.2 229 582-811 14-295 (362)
105 1dce_A Protein (RAB geranylger 99.5 1E-16 3.5E-21 182.6 -7.0 187 587-789 346-547 (567)
106 3cvr_A Invasion plasmid antige 99.5 1.1E-14 3.9E-19 164.6 9.5 175 561-789 62-244 (571)
107 1fnn_A CDC6P, cell division co 99.5 7E-13 2.4E-17 145.2 23.2 294 174-487 15-352 (389)
108 2ca6_A RAN GTPase-activating p 99.5 5.1E-16 1.7E-20 169.9 -2.7 222 561-789 35-317 (386)
109 2qby_A CDC6 homolog 1, cell di 99.5 1.5E-13 5.1E-18 150.4 15.8 295 173-487 17-349 (386)
110 3cvr_A Invasion plasmid antige 99.5 5.5E-14 1.9E-18 159.0 11.2 175 591-812 60-242 (571)
111 1m9s_A Internalin B; cell inva 99.5 3E-14 1E-18 163.2 8.2 188 589-811 20-208 (605)
112 3goz_A Leucine-rich repeat-con 99.5 5.3E-16 1.8E-20 167.9 -6.1 241 594-835 2-295 (362)
113 2o6s_A Variable lymphocyte rec 99.5 1.6E-13 5.5E-18 135.7 12.3 64 725-788 97-161 (208)
114 2o6s_A Variable lymphocyte rec 99.5 8.8E-14 3E-18 137.5 10.0 176 561-774 10-188 (208)
115 4ezg_A Putative uncharacterize 99.5 1.4E-13 4.7E-18 134.8 11.2 154 586-789 40-195 (197)
116 1h6t_A Internalin B; cell adhe 99.5 1.9E-13 6.6E-18 142.5 12.6 170 561-770 49-219 (291)
117 2p1m_B Transport inhibitor res 99.5 2.3E-15 7.8E-20 175.1 -2.8 144 561-712 159-347 (594)
118 2xot_A Amphoterin-induced prot 99.5 1.8E-13 6.2E-18 147.8 11.6 173 561-787 21-201 (361)
119 3e6j_A Variable lymphocyte rec 99.4 7.9E-13 2.7E-17 132.6 15.0 87 701-789 86-173 (229)
120 1xeu_A Internalin C; cellular 99.4 7.8E-14 2.7E-18 143.1 7.0 165 561-790 22-187 (263)
121 4ezg_A Putative uncharacterize 99.4 1.7E-13 6E-18 134.0 8.9 108 697-811 82-192 (197)
122 1xeu_A Internalin C; cellular 99.4 2.1E-13 7.1E-18 139.9 9.4 139 561-738 44-182 (263)
123 2v9t_B SLIT homolog 2 protein 99.4 9.3E-13 3.2E-17 131.1 13.3 92 697-789 74-166 (220)
124 2v70_A SLIT-2, SLIT homolog 2 99.4 6E-13 2.1E-17 132.5 11.3 90 698-789 76-167 (220)
125 2p1m_B Transport inhibitor res 99.4 7.3E-15 2.5E-19 170.9 -4.8 181 652-836 310-518 (594)
126 1dce_A Protein (RAB geranylger 99.4 7.7E-15 2.6E-19 167.1 -6.9 195 561-782 352-567 (567)
127 2v9t_B SLIT homolog 2 protein 99.4 3.3E-12 1.1E-16 127.1 12.1 150 561-764 14-165 (220)
128 1njg_A DNA polymerase III subu 99.3 2.3E-11 7.9E-16 123.7 16.2 201 176-386 23-231 (250)
129 2v70_A SLIT-2, SLIT homolog 2 99.3 7.7E-12 2.6E-16 124.4 11.4 150 561-765 14-167 (220)
130 2xot_A Amphoterin-induced prot 99.3 3.6E-12 1.2E-16 137.5 9.7 174 592-811 20-200 (361)
131 2chg_A Replication factor C sm 99.2 1E-10 3.5E-15 116.9 15.7 184 175-382 16-203 (226)
132 3e6j_A Variable lymphocyte rec 99.2 5.6E-11 1.9E-15 119.0 11.3 132 676-811 38-170 (229)
133 2ell_A Acidic leucine-rich nuc 99.2 5.5E-11 1.9E-15 112.8 9.6 132 589-787 23-159 (168)
134 1w8a_A SLIT protein; signaling 99.2 8.4E-11 2.9E-15 114.1 10.1 68 697-789 72-140 (192)
135 3sb4_A Hypothetical leucine ri 99.1 9.6E-11 3.3E-15 124.6 10.0 197 589-789 100-311 (329)
136 1w8a_A SLIT protein; signaling 99.1 1.4E-10 4.7E-15 112.6 9.6 122 561-713 11-136 (192)
137 2ell_A Acidic leucine-rich nuc 99.1 8.2E-11 2.8E-15 111.6 7.8 109 676-789 22-134 (168)
138 4b8c_D Glucose-repressible alc 99.1 1.2E-11 4.1E-16 145.5 1.3 153 581-785 215-369 (727)
139 4b8c_D Glucose-repressible alc 99.1 3.7E-11 1.3E-15 141.3 5.1 97 561-667 227-327 (727)
140 2wfh_A SLIT homolog 2 protein 99.1 5E-10 1.7E-14 108.6 12.2 68 697-788 72-139 (193)
141 2wfh_A SLIT homolog 2 protein 99.1 2.9E-10 9.9E-15 110.3 10.3 56 561-627 13-68 (193)
142 2je0_A Acidic leucine-rich nuc 99.1 1E-10 3.5E-15 108.4 6.2 124 561-711 20-148 (149)
143 2je0_A Acidic leucine-rich nuc 99.0 1.4E-10 4.7E-15 107.5 6.0 129 588-783 15-148 (149)
144 1sxj_B Activator 1 37 kDa subu 99.0 7.4E-10 2.5E-14 117.6 12.3 183 176-383 21-210 (323)
145 3sb4_A Hypothetical leucine ri 99.0 3.7E-10 1.3E-14 120.1 9.7 100 727-830 225-327 (329)
146 1a9n_A U2A', U2A'; complex (nu 99.0 3.4E-10 1.2E-14 108.2 7.7 39 585-624 14-53 (176)
147 2o6r_A Variable lymphocyte rec 99.0 1E-09 3.4E-14 105.1 10.9 111 677-789 27-138 (177)
148 1ds9_A Outer arm dynein; leuci 99.0 3E-11 1E-15 118.1 -0.5 113 581-714 39-151 (198)
149 1a9n_A U2A', U2A'; complex (nu 98.9 8.3E-10 2.9E-14 105.4 7.0 123 561-714 22-151 (176)
150 2o6r_A Variable lymphocyte rec 98.9 2.8E-09 9.4E-14 101.9 10.6 67 699-766 72-139 (177)
151 4fdw_A Leucine rich hypothetic 98.9 8E-09 2.7E-13 112.2 15.4 194 586-788 154-358 (401)
152 1hqc_A RUVB; extended AAA-ATPa 98.9 3E-09 1E-13 112.8 11.3 178 176-386 12-214 (324)
153 4fdw_A Leucine rich hypothetic 98.9 1.9E-08 6.4E-13 109.2 16.7 212 585-810 131-355 (401)
154 1iqp_A RFCS; clamp loader, ext 98.9 5.2E-09 1.8E-13 111.2 10.6 181 176-384 25-213 (327)
155 1ds9_A Outer arm dynein; leuci 98.8 1E-10 3.5E-15 114.2 -4.1 44 586-630 14-64 (198)
156 1jr3_A DNA polymerase III subu 98.8 3.5E-08 1.2E-12 106.9 14.2 198 176-383 16-221 (373)
157 3te6_A Regulatory protein SIR3 98.8 3.9E-08 1.3E-12 101.4 13.4 174 176-353 20-213 (318)
158 2r9u_A Variable lymphocyte rec 98.7 2.8E-08 9.7E-13 94.3 8.3 59 561-631 15-74 (174)
159 2chq_A Replication factor C sm 98.7 6.2E-08 2.1E-12 102.4 11.7 180 176-382 17-203 (319)
160 3g39_A Variable lymphocyte rec 98.7 3.7E-08 1.3E-12 93.1 8.7 86 703-789 30-116 (170)
161 3pfi_A Holliday junction ATP-d 98.7 4.3E-07 1.5E-11 96.7 17.9 175 175-383 28-227 (338)
162 2r9u_A Variable lymphocyte rec 98.7 5.3E-08 1.8E-12 92.4 9.1 86 703-789 33-119 (174)
163 3g39_A Variable lymphocyte rec 98.7 3.9E-08 1.3E-12 92.9 8.0 70 561-642 12-83 (170)
164 1jbk_A CLPB protein; beta barr 98.6 4.8E-08 1.6E-12 94.6 6.7 46 175-222 21-66 (195)
165 1d2n_A N-ethylmaleimide-sensit 98.6 1.8E-06 6.2E-11 88.5 17.7 197 176-402 33-262 (272)
166 3uk6_A RUVB-like 2; hexameric 98.5 1.3E-06 4.5E-11 94.1 16.8 203 175-383 43-303 (368)
167 3bos_A Putative DNA replicatio 98.5 1.6E-07 5.3E-12 94.7 8.3 172 176-383 28-217 (242)
168 3h4m_A Proteasome-activating n 98.5 6.4E-07 2.2E-11 92.8 12.9 182 174-382 15-230 (285)
169 1sxj_D Activator 1 41 kDa subu 98.5 3.9E-07 1.3E-11 97.7 11.5 195 175-382 36-234 (353)
170 2qz4_A Paraplegin; AAA+, SPG7, 98.4 5E-06 1.7E-10 84.8 17.2 182 176-382 6-221 (262)
171 2z4s_A Chromosomal replication 98.4 8.3E-07 2.9E-11 97.3 12.0 182 176-382 105-305 (440)
172 2ra8_A Uncharacterized protein 98.4 1E-07 3.6E-12 101.4 4.6 111 677-788 192-320 (362)
173 1sxj_A Activator 1 95 kDa subu 98.4 7.7E-07 2.6E-11 100.1 11.4 189 175-382 38-252 (516)
174 3un9_A NLR family member X1; l 98.4 7.7E-09 2.6E-13 111.1 -4.8 37 589-625 71-113 (372)
175 1sxj_E Activator 1 40 kDa subu 98.4 6.4E-07 2.2E-11 96.1 10.2 194 176-383 14-237 (354)
176 3u61_B DNA polymerase accessor 98.4 1E-06 3.6E-11 93.0 11.7 177 176-380 26-213 (324)
177 3d8b_A Fidgetin-like protein 1 98.4 5.4E-06 1.8E-10 88.4 16.2 184 175-384 83-296 (357)
178 3eie_A Vacuolar protein sortin 98.4 7.9E-06 2.7E-10 85.9 17.2 184 175-384 17-229 (322)
179 1a5t_A Delta prime, HOLB; zinc 98.4 5.3E-06 1.8E-10 87.7 15.9 186 182-382 8-204 (334)
180 3pvs_A Replication-associated 98.4 1.3E-06 4.5E-11 95.5 11.3 176 176-382 26-214 (447)
181 3syl_A Protein CBBX; photosynt 98.4 1.3E-06 4.6E-11 91.5 10.9 158 177-354 32-220 (309)
182 1xwi_A SKD1 protein; VPS4B, AA 98.3 2.7E-05 9.2E-10 81.6 20.5 184 176-384 12-224 (322)
183 3vfd_A Spastin; ATPase, microt 98.3 1.5E-05 5.1E-10 86.3 18.2 183 175-383 114-326 (389)
184 4fs7_A Uncharacterized protein 98.3 6.8E-06 2.3E-10 89.3 15.5 121 725-854 250-373 (394)
185 2qp9_X Vacuolar protein sortin 98.3 1.2E-05 4.1E-10 85.5 16.2 180 176-384 51-262 (355)
186 2ifg_A High affinity nerve gro 98.3 1.1E-06 3.7E-11 94.0 8.0 96 562-668 12-115 (347)
187 2ifg_A High affinity nerve gro 98.3 9.7E-07 3.3E-11 94.3 7.5 87 674-763 27-115 (347)
188 1l8q_A Chromosomal replication 98.3 7.7E-06 2.6E-10 86.3 14.3 167 186-379 24-204 (324)
189 1sxj_C Activator 1 40 kDa subu 98.2 5.2E-06 1.8E-10 88.2 12.2 176 176-379 25-208 (340)
190 3b9p_A CG5977-PA, isoform A; A 98.2 2.3E-05 7.8E-10 81.5 16.7 180 175-383 20-233 (297)
191 3e4g_A ATP synthase subunit S, 98.2 2.3E-07 7.9E-12 86.2 0.8 88 751-838 61-153 (176)
192 4fs7_A Uncharacterized protein 98.2 4.1E-06 1.4E-10 91.1 10.2 229 607-849 156-390 (394)
193 2p65_A Hypothetical protein PF 98.2 1.8E-06 6.2E-11 82.8 6.3 46 175-222 21-66 (187)
194 2zan_A Vacuolar protein sortin 98.2 3.8E-05 1.3E-09 84.3 17.4 185 175-384 133-346 (444)
195 2ra8_A Uncharacterized protein 98.2 2.6E-07 9E-12 98.2 0.1 156 674-835 135-318 (362)
196 3un9_A NLR family member X1; l 98.1 1.6E-08 5.4E-13 108.7 -9.9 131 656-788 101-252 (372)
197 3n70_A Transport activator; si 98.1 3.1E-06 1.1E-10 77.3 6.8 113 177-320 2-116 (145)
198 3cf0_A Transitional endoplasmi 98.1 3E-05 1E-09 80.6 13.9 176 176-378 15-223 (301)
199 1in4_A RUVB, holliday junction 98.0 0.0002 7E-09 75.4 19.5 173 176-382 25-222 (334)
200 4b4t_J 26S protease regulatory 98.0 7.9E-05 2.7E-09 78.7 15.5 175 175-376 147-354 (405)
201 4b4t_L 26S protease subunit RP 98.0 7.9E-05 2.7E-09 80.1 14.8 175 175-376 180-387 (437)
202 4gt6_A Cell surface protein; l 98.0 6.8E-05 2.3E-09 81.4 14.7 241 584-834 81-367 (394)
203 3pxg_A Negative regulator of g 97.9 2.5E-05 8.5E-10 86.4 10.5 147 176-352 180-339 (468)
204 3hu3_A Transitional endoplasmi 97.9 5.1E-05 1.7E-09 83.8 12.8 180 176-382 204-414 (489)
205 2gno_A DNA polymerase III, gam 97.9 5.2E-05 1.8E-09 78.3 11.6 148 180-351 1-152 (305)
206 1ofh_A ATP-dependent HSL prote 97.9 2.5E-05 8.5E-10 81.8 9.4 46 176-221 15-72 (310)
207 1lv7_A FTSH; alpha/beta domain 97.9 8.1E-05 2.8E-09 75.4 12.5 180 176-382 12-224 (257)
208 4b4t_K 26S protease regulatory 97.9 9.2E-05 3.1E-09 79.5 13.0 176 174-376 170-379 (428)
209 3co5_A Putative two-component 97.9 9E-06 3.1E-10 74.0 4.4 46 177-222 5-50 (143)
210 1qvr_A CLPB protein; coiled co 97.9 2.6E-05 8.9E-10 93.3 9.6 156 175-351 169-345 (854)
211 4b4t_M 26S protease regulatory 97.8 8E-05 2.7E-09 80.0 12.0 176 174-376 179-387 (434)
212 4b4t_H 26S protease regulatory 97.8 0.00022 7.4E-09 76.4 15.0 174 176-376 209-415 (467)
213 4b4t_I 26S protease regulatory 97.8 0.00017 5.7E-09 76.5 13.4 174 176-376 182-388 (437)
214 2bjv_A PSP operon transcriptio 97.7 0.00011 3.7E-09 74.9 10.6 47 176-222 6-52 (265)
215 2c9o_A RUVB-like 1; hexameric 97.7 0.00017 5.7E-09 79.6 12.7 96 284-382 297-409 (456)
216 2ce7_A Cell division protein F 97.7 0.00036 1.2E-08 76.3 14.9 174 176-376 16-221 (476)
217 1ojl_A Transcriptional regulat 97.7 0.00039 1.3E-08 71.9 13.8 46 176-221 2-47 (304)
218 4fcw_A Chaperone protein CLPB; 97.6 0.00014 4.9E-09 76.0 10.2 62 176-239 17-85 (311)
219 3ec2_A DNA replication protein 97.6 3.5E-05 1.2E-09 73.3 4.7 117 182-319 20-142 (180)
220 1r6b_X CLPA protein; AAA+, N-t 97.6 0.00026 9.1E-09 83.8 13.2 156 176-351 186-362 (758)
221 4h09_A Hypothetical leucine ri 97.6 0.00065 2.2E-08 73.2 15.0 60 724-783 259-318 (379)
222 3pxi_A Negative regulator of g 97.6 0.00037 1.3E-08 82.4 13.4 151 176-352 180-339 (758)
223 2r62_A Cell division protease 97.5 4.2E-05 1.4E-09 78.1 3.1 154 176-353 11-198 (268)
224 3cf2_A TER ATPase, transitiona 97.5 0.00042 1.4E-08 80.3 11.3 176 175-377 203-408 (806)
225 4gt6_A Cell surface protein; l 97.4 0.0017 6E-08 70.1 15.3 108 697-809 259-366 (394)
226 2w58_A DNAI, primosome compone 97.4 0.00022 7.4E-09 69.2 6.9 60 176-237 25-90 (202)
227 3pxi_A Negative regulator of g 97.4 0.00015 5.3E-09 85.6 6.9 151 176-351 491-675 (758)
228 3e4g_A ATP synthase subunit S, 97.4 9.6E-05 3.3E-09 68.6 3.6 34 752-785 115-149 (176)
229 2kjq_A DNAA-related protein; s 97.3 0.00013 4.4E-09 66.6 3.8 40 198-239 35-74 (149)
230 1io0_A Tropomodulin; LRR prote 97.3 6.1E-05 2.1E-09 71.8 1.3 40 585-624 31-76 (185)
231 2r44_A Uncharacterized protein 97.2 0.0028 9.7E-08 66.6 14.1 151 176-353 27-200 (331)
232 2cvh_A DNA repair and recombin 97.2 0.00095 3.3E-08 65.5 9.5 91 197-293 18-116 (220)
233 3rw6_A Nuclear RNA export fact 97.2 0.00041 1.4E-08 69.6 6.0 76 561-644 173-258 (267)
234 2x8a_A Nuclear valosin-contain 97.2 0.0052 1.8E-07 62.3 14.4 152 176-352 10-192 (274)
235 4h09_A Hypothetical leucine ri 97.1 0.0093 3.2E-07 64.0 16.7 106 723-832 235-341 (379)
236 3t15_A Ribulose bisphosphate c 97.1 0.0031 1.1E-07 64.8 12.3 24 198-221 35-58 (293)
237 1ixz_A ATP-dependent metallopr 97.1 0.0021 7.1E-08 64.7 10.7 174 176-376 16-221 (254)
238 2dhr_A FTSH; AAA+ protein, hex 97.1 0.0025 8.5E-08 70.1 11.8 172 174-376 29-236 (499)
239 3m6a_A ATP-dependent protease 97.0 0.00097 3.3E-08 75.0 8.3 160 176-351 81-266 (543)
240 1ypw_A Transitional endoplasmi 97.0 0.0017 5.8E-08 76.6 9.8 175 175-376 203-407 (806)
241 1iy2_A ATP-dependent metallopr 97.0 0.0085 2.9E-07 61.1 13.9 176 174-376 38-245 (278)
242 1um8_A ATP-dependent CLP prote 96.9 0.0019 6.4E-08 69.3 9.1 46 176-221 21-94 (376)
243 3rw6_A Nuclear RNA export fact 96.9 0.00016 5.6E-09 72.5 0.6 36 588-623 168-206 (267)
244 1g5t_A COB(I)alamin adenosyltr 96.9 0.0023 7.9E-08 60.2 8.2 118 200-321 29-164 (196)
245 1jr3_D DNA polymerase III, del 96.9 0.014 4.8E-07 61.5 15.5 157 198-382 17-184 (343)
246 1r6b_X CLPA protein; AAA+, N-t 96.8 0.0042 1.4E-07 73.4 11.7 46 176-221 458-510 (758)
247 1io0_A Tropomodulin; LRR prote 96.7 6.8E-05 2.3E-09 71.5 -3.7 13 751-763 93-105 (185)
248 1qvr_A CLPB protein; coiled co 96.7 0.0079 2.7E-07 71.8 13.2 46 176-221 558-610 (854)
249 2vhj_A Ntpase P4, P4; non- hyd 96.7 0.0008 2.7E-08 68.5 3.8 71 198-294 122-194 (331)
250 3hr8_A Protein RECA; alpha and 96.7 0.0029 9.8E-08 66.2 8.2 100 187-293 48-150 (356)
251 2b8t_A Thymidine kinase; deoxy 96.7 0.00062 2.1E-08 66.2 2.8 113 198-320 11-126 (223)
252 3io5_A Recombination and repai 96.6 0.0072 2.5E-07 61.2 9.5 86 201-293 30-122 (333)
253 2z43_A DNA repair and recombin 96.5 0.0054 1.9E-07 64.0 8.9 58 198-256 106-167 (324)
254 1n0w_A DNA repair protein RAD5 96.5 0.0061 2.1E-07 60.7 8.5 57 198-255 23-83 (243)
255 1v5w_A DMC1, meiotic recombina 96.4 0.014 4.7E-07 61.4 11.0 67 188-255 111-181 (343)
256 2w0m_A SSO2452; RECA, SSPF, un 96.4 0.0057 2E-07 60.4 7.5 118 198-320 22-168 (235)
257 2i1q_A DNA repair and recombin 96.4 0.0082 2.8E-07 62.7 9.0 66 189-255 88-167 (322)
258 1xp8_A RECA protein, recombina 96.3 0.0078 2.7E-07 63.5 8.1 88 198-292 73-162 (366)
259 2qgz_A Helicase loader, putati 96.2 0.0032 1.1E-07 65.1 4.8 53 183-237 135-189 (308)
260 2zr9_A Protein RECA, recombina 96.2 0.0086 2.9E-07 62.9 7.8 89 197-292 59-149 (349)
261 4a74_A DNA repair and recombin 96.0 0.041 1.4E-06 54.0 11.3 47 197-243 23-73 (231)
262 1u94_A RECA protein, recombina 95.9 0.0097 3.3E-07 62.5 6.8 88 198-292 62-151 (356)
263 1vma_A Cell division protein F 95.9 0.015 5.1E-07 59.7 7.9 92 198-293 103-197 (306)
264 3lw7_A Adenylate kinase relate 95.9 0.018 6.3E-07 53.7 8.1 20 200-219 2-21 (179)
265 3bh0_A DNAB-like replicative h 95.8 0.03 1E-06 58.0 9.9 53 197-253 66-118 (315)
266 2pze_A Cystic fibrosis transme 95.8 0.13 4.5E-06 50.3 13.8 52 274-325 140-195 (229)
267 2ehv_A Hypothetical protein PH 95.7 0.0082 2.8E-07 60.1 5.2 24 198-221 29-52 (251)
268 1pzn_A RAD51, DNA repair and r 95.7 0.031 1.1E-06 58.7 9.8 57 197-254 129-189 (349)
269 3lda_A DNA repair protein RAD5 95.6 0.03 1E-06 59.8 8.9 68 188-256 167-238 (400)
270 3rfe_A Platelet glycoprotein I 95.6 0.01 3.6E-07 52.2 4.5 54 732-788 12-68 (130)
271 2cbz_A Multidrug resistance-as 95.5 0.07 2.4E-06 52.5 10.7 23 199-221 31-53 (237)
272 1rz3_A Hypothetical protein rb 95.5 0.012 4.1E-07 56.5 5.0 41 181-221 3-44 (201)
273 3nbx_X ATPase RAVA; AAA+ ATPas 95.5 0.0087 3E-07 65.9 4.4 43 176-222 22-64 (500)
274 1vpl_A ABC transporter, ATP-bi 95.4 0.1 3.6E-06 51.9 11.8 23 199-221 41-63 (256)
275 3kl4_A SRP54, signal recogniti 95.4 0.029 9.9E-07 60.2 8.1 91 198-292 96-189 (433)
276 2orw_A Thymidine kinase; TMTK, 95.4 0.002 7E-08 60.9 -0.8 22 200-221 4-25 (184)
277 3e70_C DPA, signal recognition 95.4 0.044 1.5E-06 56.8 9.1 25 197-221 127-151 (328)
278 3c8u_A Fructokinase; YP_612366 95.3 0.0088 3E-07 57.9 3.5 37 185-221 8-44 (208)
279 3hws_A ATP-dependent CLP prote 95.3 0.0086 3E-07 63.7 3.6 45 177-221 16-73 (363)
280 2pjz_A Hypothetical protein ST 95.2 0.13 4.4E-06 51.4 11.7 23 199-221 30-52 (263)
281 4a1f_A DNAB helicase, replicat 95.1 0.054 1.9E-06 56.1 8.9 53 198-254 45-97 (338)
282 3cf2_A TER ATPase, transitiona 95.1 0.019 6.5E-07 66.6 6.0 174 175-375 476-682 (806)
283 3dm5_A SRP54, signal recogniti 95.1 0.037 1.3E-06 59.4 7.8 24 198-221 99-122 (443)
284 1qhx_A CPT, protein (chloramph 95.0 0.0098 3.4E-07 55.9 2.6 22 200-221 4-25 (178)
285 3jvv_A Twitching mobility prot 95.0 0.017 5.8E-07 60.7 4.6 112 199-323 123-234 (356)
286 3llm_A ATP-dependent RNA helic 94.9 0.12 4.2E-06 50.8 10.6 105 185-294 66-188 (235)
287 2dr3_A UPF0273 protein PH0284; 94.9 0.05 1.7E-06 54.0 7.8 40 198-239 22-61 (247)
288 2px0_A Flagellar biosynthesis 94.9 0.048 1.6E-06 55.7 7.6 87 198-291 104-191 (296)
289 1zp6_A Hypothetical protein AT 94.7 0.017 5.7E-07 55.0 3.6 24 198-221 8-31 (191)
290 1zu4_A FTSY; GTPase, signal re 94.7 0.075 2.6E-06 54.9 8.7 39 198-238 104-142 (320)
291 3sr0_A Adenylate kinase; phosp 94.7 0.038 1.3E-06 53.0 6.1 86 201-300 2-93 (206)
292 1odf_A YGR205W, hypothetical 3 94.7 0.025 8.4E-07 57.6 4.8 55 196-250 28-83 (290)
293 1q57_A DNA primase/helicase; d 94.7 0.12 4E-06 57.6 10.8 53 197-253 240-293 (503)
294 3tui_C Methionine import ATP-b 94.7 0.14 4.8E-06 53.4 10.6 24 198-221 53-76 (366)
295 3ice_A Transcription terminati 94.6 0.026 8.8E-07 58.7 4.8 24 198-221 173-196 (422)
296 2bbs_A Cystic fibrosis transme 94.6 0.3 1E-05 49.5 12.7 52 274-325 169-224 (290)
297 1ls1_A Signal recognition part 94.6 0.057 2E-06 55.2 7.2 89 199-291 98-189 (295)
298 1j8m_F SRP54, signal recogniti 94.6 0.08 2.7E-06 54.0 8.3 91 199-292 98-190 (297)
299 3rfe_A Platelet glycoprotein I 94.6 0.039 1.3E-06 48.5 5.2 43 581-625 24-67 (130)
300 1ly1_A Polynucleotide kinase; 94.5 0.016 5.6E-07 54.4 2.9 22 200-221 3-24 (181)
301 3kb2_A SPBC2 prophage-derived 94.5 0.014 4.9E-07 54.3 2.4 22 200-221 2-23 (173)
302 1g8p_A Magnesium-chelatase 38 94.5 0.014 4.9E-07 61.7 2.7 44 176-221 24-67 (350)
303 3uie_A Adenylyl-sulfate kinase 94.3 0.023 7.7E-07 54.6 3.4 24 198-221 24-47 (200)
304 3vaa_A Shikimate kinase, SK; s 94.3 0.018 6E-07 55.3 2.6 23 199-221 25-47 (199)
305 1nlf_A Regulatory protein REPA 94.3 0.066 2.3E-06 54.4 7.1 23 199-221 30-52 (279)
306 1fx0_B ATP synthase beta chain 94.3 0.13 4.4E-06 55.5 9.4 104 188-293 155-277 (498)
307 1tue_A Replication protein E1; 94.3 0.03 1E-06 52.8 4.0 36 185-221 45-80 (212)
308 1kgd_A CASK, peripheral plasma 94.3 0.02 6.9E-07 53.8 2.9 23 199-221 5-27 (180)
309 1ex7_A Guanylate kinase; subst 94.3 0.014 4.7E-07 54.9 1.7 22 200-221 2-23 (186)
310 2rhm_A Putative kinase; P-loop 94.2 0.024 8.3E-07 53.9 3.3 24 198-221 4-27 (193)
311 3tlx_A Adenylate kinase 2; str 94.2 0.028 9.6E-07 55.8 3.9 36 186-221 16-51 (243)
312 3trf_A Shikimate kinase, SK; a 94.2 0.018 6.1E-07 54.5 2.3 23 199-221 5-27 (185)
313 3d31_A Sulfate/molybdate ABC t 94.1 0.3 1E-05 50.9 11.6 23 199-221 26-48 (348)
314 2ck3_D ATP synthase subunit be 94.1 0.11 3.9E-06 55.7 8.5 65 187-253 142-207 (482)
315 1sky_E F1-ATPase, F1-ATP synth 94.1 0.081 2.8E-06 56.9 7.4 50 200-251 152-203 (473)
316 2q6t_A DNAB replication FORK h 94.1 0.14 4.8E-06 55.8 9.5 64 186-253 188-251 (444)
317 2xxa_A Signal recognition part 94.0 0.097 3.3E-06 56.5 7.9 39 198-238 99-138 (433)
318 1gvn_B Zeta; postsegregational 94.0 0.037 1.3E-06 56.4 4.4 24 198-221 32-55 (287)
319 1z47_A CYSA, putative ABC-tran 94.0 0.21 7.3E-06 52.0 10.2 23 199-221 41-63 (355)
320 1knq_A Gluconate kinase; ALFA/ 94.0 0.032 1.1E-06 52.1 3.7 24 198-221 7-30 (175)
321 3rlf_A Maltose/maltodextrin im 94.0 0.19 6.6E-06 52.8 9.9 23 199-221 29-51 (381)
322 2it1_A 362AA long hypothetical 94.0 0.24 8.1E-06 51.9 10.5 23 199-221 29-51 (362)
323 1kag_A SKI, shikimate kinase I 94.0 0.02 7E-07 53.3 2.2 22 200-221 5-26 (173)
324 3tau_A Guanylate kinase, GMP k 94.0 0.026 8.8E-07 54.6 3.0 24 198-221 7-30 (208)
325 1nks_A Adenylate kinase; therm 94.0 0.026 8.8E-07 53.7 3.0 22 200-221 2-23 (194)
326 4gp7_A Metallophosphoesterase; 93.9 0.028 9.7E-07 52.3 3.1 22 199-220 9-30 (171)
327 4akg_A Glutathione S-transfera 93.9 0.21 7.2E-06 65.7 11.9 137 200-351 1268-1431(2695)
328 4eun_A Thermoresistant glucoki 93.9 0.026 8.8E-07 54.1 2.8 23 199-221 29-51 (200)
329 1rj9_A FTSY, signal recognitio 93.9 0.074 2.5E-06 54.5 6.3 24 198-221 101-124 (304)
330 2yyz_A Sugar ABC transporter, 93.8 0.24 8.2E-06 51.8 10.2 23 199-221 29-51 (359)
331 3tr0_A Guanylate kinase, GMP k 93.8 0.029 9.8E-07 54.0 3.0 23 199-221 7-29 (205)
332 3cmu_A Protein RECA, recombina 93.7 0.058 2E-06 68.3 6.2 89 197-292 1425-1515(2050)
333 3tqc_A Pantothenate kinase; bi 93.7 0.043 1.5E-06 56.5 4.2 43 179-221 70-114 (321)
334 2ze6_A Isopentenyl transferase 93.7 0.029 9.9E-07 56.0 2.9 22 200-221 2-23 (253)
335 3iij_A Coilin-interacting nucl 93.7 0.023 8E-07 53.3 2.1 23 199-221 11-33 (180)
336 2pt7_A CAG-ALFA; ATPase, prote 93.6 0.099 3.4E-06 54.3 6.9 104 200-320 172-275 (330)
337 3t61_A Gluconokinase; PSI-biol 93.6 0.024 8.1E-07 54.5 2.0 23 199-221 18-40 (202)
338 2yhs_A FTSY, cell division pro 93.6 0.13 4.3E-06 55.9 7.8 42 198-242 292-333 (503)
339 1g41_A Heat shock protein HSLU 93.6 0.03 1E-06 60.3 2.9 46 176-221 15-72 (444)
340 1y63_A LMAJ004144AAA protein; 93.6 0.031 1E-06 52.8 2.8 23 199-221 10-32 (184)
341 2qt1_A Nicotinamide riboside k 93.6 0.04 1.4E-06 53.1 3.7 24 198-221 20-43 (207)
342 1kht_A Adenylate kinase; phosp 93.6 0.029 1E-06 53.2 2.6 22 200-221 4-25 (192)
343 3asz_A Uridine kinase; cytidin 93.6 0.038 1.3E-06 53.5 3.4 24 198-221 5-28 (211)
344 2bdt_A BH3686; alpha-beta prot 93.6 0.035 1.2E-06 52.6 3.1 22 200-221 3-24 (189)
345 2qor_A Guanylate kinase; phosp 93.5 0.026 9E-07 54.3 2.2 24 198-221 11-34 (204)
346 1ye8_A Protein THEP1, hypothet 93.5 0.034 1.2E-06 52.0 2.9 21 201-221 2-22 (178)
347 2j37_W Signal recognition part 93.5 0.23 8E-06 54.4 9.9 24 198-221 100-123 (504)
348 3a00_A Guanylate kinase, GMP k 93.5 0.026 8.9E-07 53.4 2.1 22 200-221 2-23 (186)
349 2p5t_B PEZT; postsegregational 93.5 0.046 1.6E-06 54.6 4.0 25 197-221 30-54 (253)
350 1tev_A UMP-CMP kinase; ploop, 93.4 0.035 1.2E-06 52.8 2.9 23 199-221 3-25 (196)
351 1zuh_A Shikimate kinase; alpha 93.4 0.031 1E-06 51.8 2.4 23 199-221 7-29 (168)
352 2ga8_A Hypothetical 39.9 kDa p 93.4 0.055 1.9E-06 56.0 4.5 42 180-221 3-46 (359)
353 2j41_A Guanylate kinase; GMP, 93.4 0.036 1.2E-06 53.3 3.0 24 199-222 6-29 (207)
354 3bgw_A DNAB-like replicative h 93.4 0.15 5.1E-06 55.4 8.1 63 186-253 185-247 (444)
355 2ffh_A Protein (FFH); SRP54, s 93.4 0.19 6.4E-06 53.9 8.7 37 199-237 98-134 (425)
356 2c95_A Adenylate kinase 1; tra 93.4 0.037 1.3E-06 52.8 2.9 23 199-221 9-31 (196)
357 1uf9_A TT1252 protein; P-loop, 93.3 0.042 1.4E-06 52.7 3.3 25 197-221 6-30 (203)
358 3ney_A 55 kDa erythrocyte memb 93.3 0.037 1.3E-06 52.4 2.8 24 198-221 18-41 (197)
359 3b5x_A Lipid A export ATP-bind 93.3 0.3 1E-05 55.3 10.8 24 198-221 368-391 (582)
360 3a4m_A L-seryl-tRNA(SEC) kinas 93.3 0.039 1.3E-06 55.4 3.1 23 199-221 4-26 (260)
361 3hjn_A DTMP kinase, thymidylat 93.3 0.18 6.2E-06 47.9 7.6 49 201-251 2-50 (197)
362 3cm0_A Adenylate kinase; ATP-b 93.2 0.041 1.4E-06 51.9 3.0 23 199-221 4-26 (186)
363 4edh_A DTMP kinase, thymidylat 93.2 0.15 5.3E-06 49.0 7.1 24 199-222 6-29 (213)
364 2yvu_A Probable adenylyl-sulfa 93.2 0.044 1.5E-06 51.7 3.2 24 198-221 12-35 (186)
365 1ukz_A Uridylate kinase; trans 93.2 0.044 1.5E-06 52.6 3.2 24 198-221 14-37 (203)
366 1lvg_A Guanylate kinase, GMP k 93.2 0.031 1.1E-06 53.4 2.1 23 199-221 4-26 (198)
367 2iyv_A Shikimate kinase, SK; t 93.2 0.027 9.3E-07 53.1 1.6 22 200-221 3-24 (184)
368 2plr_A DTMP kinase, probable t 93.2 0.043 1.5E-06 53.1 3.1 23 199-221 4-26 (213)
369 1htw_A HI0065; nucleotide-bind 93.2 0.051 1.7E-06 49.6 3.3 24 198-221 32-55 (158)
370 1via_A Shikimate kinase; struc 93.2 0.036 1.2E-06 51.8 2.4 21 201-221 6-26 (175)
371 3umf_A Adenylate kinase; rossm 93.1 0.045 1.5E-06 52.8 3.1 25 197-221 27-51 (217)
372 1uj2_A Uridine-cytidine kinase 93.1 0.043 1.5E-06 54.8 3.1 24 198-221 21-44 (252)
373 3b9q_A Chloroplast SRP recepto 93.1 0.18 6.1E-06 51.6 7.8 24 198-221 99-122 (302)
374 2r6a_A DNAB helicase, replicat 93.1 0.18 6.3E-06 55.1 8.4 52 197-251 201-252 (454)
375 2ewv_A Twitching motility prot 93.1 0.052 1.8E-06 57.6 3.8 110 198-321 135-245 (372)
376 2if2_A Dephospho-COA kinase; a 93.1 0.041 1.4E-06 52.9 2.8 21 201-221 3-23 (204)
377 2bwj_A Adenylate kinase 5; pho 93.1 0.039 1.3E-06 52.7 2.6 23 199-221 12-34 (199)
378 2jaq_A Deoxyguanosine kinase; 93.1 0.039 1.3E-06 53.0 2.6 21 201-221 2-22 (205)
379 1jjv_A Dephospho-COA kinase; P 93.0 0.047 1.6E-06 52.5 3.1 22 200-221 3-24 (206)
380 1qf9_A UMP/CMP kinase, protein 93.0 0.047 1.6E-06 51.8 3.0 23 199-221 6-28 (194)
381 1e6c_A Shikimate kinase; phosp 93.0 0.033 1.1E-06 51.8 1.8 22 200-221 3-24 (173)
382 2vli_A Antibiotic resistance p 92.9 0.031 1E-06 52.6 1.6 23 199-221 5-27 (183)
383 1znw_A Guanylate kinase, GMP k 92.9 0.048 1.6E-06 52.6 2.9 23 199-221 20-42 (207)
384 2cdn_A Adenylate kinase; phosp 92.9 0.05 1.7E-06 52.1 3.0 23 199-221 20-42 (201)
385 2z0h_A DTMP kinase, thymidylat 92.8 0.089 3E-06 50.0 4.8 21 201-221 2-22 (197)
386 1s96_A Guanylate kinase, GMP k 92.8 0.048 1.7E-06 52.9 2.8 24 198-221 15-38 (219)
387 2jeo_A Uridine-cytidine kinase 92.8 0.057 2E-06 53.6 3.4 24 198-221 24-47 (245)
388 2pt5_A Shikimate kinase, SK; a 92.8 0.046 1.6E-06 50.5 2.6 21 201-221 2-22 (168)
389 1cke_A CK, MSSA, protein (cyti 92.8 0.049 1.7E-06 53.4 2.9 22 200-221 6-27 (227)
390 3dzd_A Transcriptional regulat 92.8 0.73 2.5E-05 48.6 12.1 46 176-221 129-174 (368)
391 3aez_A Pantothenate kinase; tr 92.8 0.056 1.9E-06 55.6 3.4 25 197-221 88-112 (312)
392 2wwf_A Thymidilate kinase, put 92.7 0.049 1.7E-06 52.6 2.8 23 199-221 10-32 (212)
393 1z6g_A Guanylate kinase; struc 92.7 0.043 1.5E-06 53.4 2.3 23 199-221 23-45 (218)
394 2bbw_A Adenylate kinase 4, AK4 92.7 0.051 1.7E-06 54.0 2.9 23 199-221 27-49 (246)
395 1nn5_A Similar to deoxythymidy 92.7 0.053 1.8E-06 52.5 3.0 23 199-221 9-31 (215)
396 2hf9_A Probable hydrogenase ni 92.6 0.088 3E-06 51.4 4.5 25 198-222 37-61 (226)
397 3p32_A Probable GTPase RV1496/ 92.6 0.12 4.3E-06 54.3 5.9 37 185-221 65-101 (355)
398 2pez_A Bifunctional 3'-phospho 92.6 0.06 2.1E-06 50.4 3.1 24 198-221 4-27 (179)
399 1u0j_A DNA replication protein 92.6 0.089 3.1E-06 52.1 4.4 34 188-221 93-126 (267)
400 3fwy_A Light-independent proto 92.6 0.089 3E-06 54.2 4.6 40 198-239 47-86 (314)
401 3tif_A Uncharacterized ABC tra 92.6 0.095 3.2E-06 51.5 4.6 23 199-221 31-53 (235)
402 2grj_A Dephospho-COA kinase; T 92.5 0.054 1.9E-06 51.3 2.7 24 198-221 11-34 (192)
403 2pbr_A DTMP kinase, thymidylat 92.5 0.052 1.8E-06 51.5 2.6 21 201-221 2-22 (195)
404 2og2_A Putative signal recogni 92.5 0.26 8.8E-06 51.6 8.0 24 198-221 156-179 (359)
405 3lv8_A DTMP kinase, thymidylat 92.4 0.18 6.1E-06 49.3 6.3 24 199-222 27-50 (236)
406 1xjc_A MOBB protein homolog; s 92.4 0.061 2.1E-06 49.5 2.7 23 199-221 4-26 (169)
407 3v9p_A DTMP kinase, thymidylat 92.4 0.13 4.5E-06 50.0 5.2 24 199-222 25-48 (227)
408 2f1r_A Molybdopterin-guanine d 92.4 0.059 2E-06 49.9 2.6 22 200-221 3-24 (171)
409 1zd8_A GTP:AMP phosphotransfer 92.3 0.056 1.9E-06 52.9 2.6 23 199-221 7-29 (227)
410 3vr4_D V-type sodium ATPase su 92.3 0.2 6.9E-06 53.4 6.9 95 199-293 151-259 (465)
411 3k1j_A LON protease, ATP-depen 92.3 0.11 3.8E-06 59.1 5.4 42 176-221 41-82 (604)
412 1gtv_A TMK, thymidylate kinase 92.3 0.042 1.5E-06 53.2 1.6 21 201-221 2-22 (214)
413 1tf7_A KAIC; homohexamer, hexa 92.3 0.091 3.1E-06 58.8 4.5 114 197-317 37-182 (525)
414 1aky_A Adenylate kinase; ATP:A 92.2 0.06 2E-06 52.5 2.7 23 199-221 4-26 (220)
415 3cmw_A Protein RECA, recombina 92.2 0.14 4.8E-06 64.2 6.4 102 185-293 368-472 (1706)
416 1m7g_A Adenylylsulfate kinase; 92.2 0.071 2.4E-06 51.5 3.1 23 199-221 25-47 (211)
417 1cr0_A DNA primase/helicase; R 92.2 0.14 4.9E-06 52.4 5.6 51 198-252 34-85 (296)
418 4tmk_A Protein (thymidylate ki 92.2 0.2 6.9E-06 48.2 6.3 53 199-252 3-55 (213)
419 4e22_A Cytidylate kinase; P-lo 92.2 0.066 2.3E-06 53.4 3.0 23 199-221 27-49 (252)
420 2v54_A DTMP kinase, thymidylat 92.2 0.061 2.1E-06 51.6 2.7 23 199-221 4-26 (204)
421 3fb4_A Adenylate kinase; psych 92.2 0.061 2.1E-06 52.2 2.7 21 201-221 2-22 (216)
422 2f6r_A COA synthase, bifunctio 92.2 0.078 2.7E-06 53.8 3.5 24 198-221 74-97 (281)
423 2wsm_A Hydrogenase expression/ 92.1 0.091 3.1E-06 51.1 3.8 38 183-222 16-53 (221)
424 3cmu_A Protein RECA, recombina 92.0 0.17 5.8E-06 64.2 6.9 106 180-292 363-471 (2050)
425 2pcj_A ABC transporter, lipopr 92.0 0.12 4.1E-06 50.3 4.5 23 199-221 30-52 (224)
426 3a8t_A Adenylate isopentenyltr 92.0 0.085 2.9E-06 54.2 3.5 24 198-221 39-62 (339)
427 3dl0_A Adenylate kinase; phosp 92.0 0.066 2.3E-06 51.9 2.7 21 201-221 2-22 (216)
428 1zak_A Adenylate kinase; ATP:A 92.0 0.061 2.1E-06 52.5 2.4 23 199-221 5-27 (222)
429 1b0u_A Histidine permease; ABC 92.0 0.12 4.1E-06 51.7 4.6 23 199-221 32-54 (262)
430 2r9v_A ATP synthase subunit al 91.9 0.33 1.1E-05 52.5 8.0 91 199-293 175-278 (515)
431 3ld9_A DTMP kinase, thymidylat 91.9 0.19 6.5E-06 48.6 5.8 25 198-222 20-44 (223)
432 3b85_A Phosphate starvation-in 91.9 0.088 3E-06 50.6 3.4 22 200-221 23-44 (208)
433 3e1s_A Exodeoxyribonuclease V, 91.8 0.41 1.4E-05 53.8 9.2 23 199-221 204-226 (574)
434 3l0o_A Transcription terminati 91.8 0.43 1.5E-05 49.6 8.4 34 187-221 164-197 (427)
435 2onk_A Molybdate/tungstate ABC 91.8 0.12 4.2E-06 50.8 4.4 22 200-221 25-46 (240)
436 3exa_A TRNA delta(2)-isopenten 91.8 0.081 2.8E-06 53.6 3.0 23 199-221 3-25 (322)
437 2c61_A A-type ATP synthase non 91.8 0.2 6.7E-06 53.9 6.1 93 199-291 152-258 (469)
438 3gqb_B V-type ATP synthase bet 91.8 0.16 5.4E-06 54.2 5.4 95 199-293 147-262 (464)
439 1vht_A Dephospho-COA kinase; s 91.7 0.088 3E-06 51.1 3.2 23 199-221 4-26 (218)
440 3lnc_A Guanylate kinase, GMP k 91.7 0.058 2E-06 53.0 1.9 23 199-221 27-50 (231)
441 2olj_A Amino acid ABC transpor 91.7 0.14 4.7E-06 51.2 4.6 24 198-221 49-72 (263)
442 3gfo_A Cobalt import ATP-bindi 91.7 0.13 4.4E-06 51.7 4.5 23 199-221 34-56 (275)
443 3b60_A Lipid A export ATP-bind 91.7 0.27 9.4E-06 55.6 7.7 24 198-221 368-391 (582)
444 2qmh_A HPR kinase/phosphorylas 91.7 0.09 3.1E-06 49.3 3.0 24 199-222 34-57 (205)
445 1sq5_A Pantothenate kinase; P- 91.6 0.098 3.4E-06 53.9 3.6 25 197-221 78-102 (308)
446 3d3q_A TRNA delta(2)-isopenten 91.6 0.081 2.8E-06 54.6 2.9 22 200-221 8-29 (340)
447 2i3b_A HCR-ntpase, human cance 91.6 0.07 2.4E-06 50.4 2.2 22 201-222 3-24 (189)
448 1svm_A Large T antigen; AAA+ f 91.5 0.13 4.3E-06 54.4 4.3 36 186-221 156-191 (377)
449 4eaq_A DTMP kinase, thymidylat 91.4 0.15 5E-06 49.9 4.4 25 198-222 25-49 (229)
450 2ixe_A Antigen peptide transpo 91.4 0.15 5.2E-06 51.2 4.6 24 198-221 44-67 (271)
451 2ff7_A Alpha-hemolysin translo 91.3 0.15 5.1E-06 50.5 4.4 23 199-221 35-57 (247)
452 3crm_A TRNA delta(2)-isopenten 91.3 0.089 3.1E-06 53.9 2.8 22 200-221 6-27 (323)
453 3ozx_A RNAse L inhibitor; ATP 91.3 0.57 2E-05 52.1 9.6 24 198-221 24-47 (538)
454 3ake_A Cytidylate kinase; CMP 91.3 0.088 3E-06 50.6 2.7 21 201-221 4-24 (208)
455 3r20_A Cytidylate kinase; stru 91.3 0.089 3E-06 51.3 2.7 23 199-221 9-31 (233)
456 1sgw_A Putative ABC transporte 91.2 0.13 4.6E-06 49.5 3.9 23 199-221 35-57 (214)
457 3foz_A TRNA delta(2)-isopenten 91.2 0.097 3.3E-06 53.0 2.9 24 198-221 9-32 (316)
458 1ji0_A ABC transporter; ATP bi 91.2 0.16 5.4E-06 50.1 4.4 23 199-221 32-54 (240)
459 2qe7_A ATP synthase subunit al 91.2 0.36 1.2E-05 52.1 7.4 92 198-293 161-265 (502)
460 2j9r_A Thymidine kinase; TK1, 91.1 0.25 8.6E-06 47.1 5.5 111 198-321 27-139 (214)
461 1e4v_A Adenylate kinase; trans 91.1 0.097 3.3E-06 50.7 2.8 21 201-221 2-22 (214)
462 3nwj_A ATSK2; P loop, shikimat 91.1 0.08 2.8E-06 52.4 2.2 23 199-221 48-70 (250)
463 4g1u_C Hemin import ATP-bindin 91.1 0.16 5.3E-06 51.0 4.3 23 199-221 37-59 (266)
464 1mv5_A LMRA, multidrug resista 91.1 0.12 4E-06 51.1 3.4 24 198-221 27-50 (243)
465 2yz2_A Putative ABC transporte 91.1 0.17 5.8E-06 50.7 4.6 23 199-221 33-55 (266)
466 4hlc_A DTMP kinase, thymidylat 91.0 0.54 1.8E-05 44.9 7.9 23 200-222 3-25 (205)
467 3be4_A Adenylate kinase; malar 91.0 0.1 3.4E-06 50.7 2.8 22 200-221 6-27 (217)
468 1g6h_A High-affinity branched- 91.0 0.17 5.8E-06 50.5 4.4 23 199-221 33-55 (257)
469 3nh6_A ATP-binding cassette SU 90.9 0.18 6.1E-06 51.5 4.6 24 198-221 79-102 (306)
470 2xb4_A Adenylate kinase; ATP-b 90.9 0.099 3.4E-06 51.0 2.6 21 201-221 2-22 (223)
471 3cmw_A Protein RECA, recombina 90.9 0.17 5.9E-06 63.3 5.2 89 197-292 1429-1519(1706)
472 2eyu_A Twitching motility prot 90.8 0.13 4.4E-06 51.4 3.4 111 198-322 24-135 (261)
473 1np6_A Molybdopterin-guanine d 90.8 0.11 3.7E-06 48.2 2.6 23 199-221 6-28 (174)
474 2r8r_A Sensor protein; KDPD, P 90.8 0.2 6.7E-06 48.2 4.4 107 200-320 7-127 (228)
475 2v9p_A Replication protein E1; 90.7 0.17 5.9E-06 51.5 4.2 25 197-221 124-148 (305)
476 3oaa_A ATP synthase subunit al 90.7 0.62 2.1E-05 50.2 8.6 99 188-293 152-265 (513)
477 1ltq_A Polynucleotide kinase; 90.6 0.12 3.9E-06 53.2 2.9 22 200-221 3-24 (301)
478 1ak2_A Adenylate kinase isoenz 90.6 0.12 4E-06 50.9 2.8 23 199-221 16-38 (233)
479 2ghi_A Transport protein; mult 90.5 0.12 4.2E-06 51.6 3.0 23 199-221 46-68 (260)
480 3zvl_A Bifunctional polynucleo 90.5 0.11 3.9E-06 55.9 2.9 24 198-221 257-280 (416)
481 4a82_A Cystic fibrosis transme 90.5 0.37 1.3E-05 54.4 7.2 24 198-221 366-389 (578)
482 2zu0_C Probable ATP-dependent 90.5 0.13 4.3E-06 51.7 3.0 23 199-221 46-68 (267)
483 1xx6_A Thymidine kinase; NESG, 90.5 0.12 4.1E-06 48.7 2.6 25 198-222 7-31 (191)
484 1a7j_A Phosphoribulokinase; tr 90.4 0.066 2.3E-06 54.5 0.8 24 198-221 4-27 (290)
485 2xau_A PRE-mRNA-splicing facto 90.4 0.94 3.2E-05 52.9 10.7 34 184-221 98-131 (773)
486 2wji_A Ferrous iron transport 90.3 0.16 5.3E-06 46.7 3.3 23 200-222 4-26 (165)
487 1fx0_A ATP synthase alpha chai 90.3 0.33 1.1E-05 52.5 6.1 91 198-294 162-267 (507)
488 2ihy_A ABC transporter, ATP-bi 90.3 0.21 7.2E-06 50.4 4.5 23 199-221 47-69 (279)
489 1oix_A RAS-related protein RAB 90.3 0.14 4.7E-06 48.5 3.0 24 199-222 29-52 (191)
490 1fzq_A ADP-ribosylation factor 90.3 0.19 6.5E-06 47.0 3.9 26 197-222 14-39 (181)
491 2zej_A Dardarin, leucine-rich 90.2 0.13 4.3E-06 48.4 2.6 22 201-222 4-25 (184)
492 2d2e_A SUFC protein; ABC-ATPas 90.2 0.13 4.5E-06 51.0 2.8 23 199-221 29-51 (250)
493 1yrb_A ATP(GTP)binding protein 90.2 0.15 5.1E-06 51.1 3.3 24 198-221 13-36 (262)
494 2iw3_A Elongation factor 3A; a 90.1 1.1 3.8E-05 53.1 10.8 122 199-326 461-611 (986)
495 2qi9_C Vitamin B12 import ATP- 90.0 0.14 4.8E-06 50.7 2.8 23 199-221 26-48 (249)
496 3end_A Light-independent proto 90.0 0.23 7.8E-06 51.1 4.6 42 198-241 40-81 (307)
497 2yl4_A ATP-binding cassette SU 89.9 0.38 1.3E-05 54.6 6.7 24 198-221 369-392 (595)
498 2zts_A Putative uncharacterize 89.8 0.11 3.8E-06 51.6 1.9 50 198-250 29-78 (251)
499 3qf4_A ABC transporter, ATP-bi 89.8 0.71 2.4E-05 52.2 8.8 24 198-221 368-391 (587)
500 2nq2_C Hypothetical ABC transp 89.8 0.15 5E-06 50.7 2.8 23 199-221 31-53 (253)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=7e-45 Score=415.56 Aligned_cols=319 Identities=19% Similarity=0.275 Sum_probs=257.1
Q ss_pred eeccccHHHHHHHHhcC-CCCcEEEEEEecCcchHHHHHHHHhc--CccccCCcceEEEEEeCCCC--CHHHHHHHHHHh
Q 037627 179 VGFDDDVSKLLAKLLNK-EPRRFVISVYGMGGLGKTTLARKLYH--NNDVKNKFDRCAWVSVSQDY--DTKDLLLRIIRS 253 (858)
Q Consensus 179 vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~~GiGKTtLa~~~~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~ 253 (858)
|||+.++++|.++|... +...++|+|+||||+||||||+++|+ +.+++.+|++++|+++++.. +...++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 59999999999999765 44579999999999999999999997 56899999999999999875 789999999999
Q ss_pred cccccc---chhhhhccHHHHHHHHHHHhcCc-eEEEEEEcCCChhhHHHHHhhCCCCCCCcEEEEEeCchhHHhhcCCC
Q 037627 254 FKINVL---TRELEEMREEDLERYLHNCLQGK-SYLVVVDDAWQKETWESLKRAFPDNKNGSRVIITTRIKEVAERSDEN 329 (858)
Q Consensus 254 l~~~~~---~~~~~~~~~~~~~~~l~~~l~~~-~~LlvlDd~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~~~~~~~~~ 329 (858)
++.... ....+..+.+.+...+++.++++ |+||||||||+.+.+ .+... +||+||||||++.++..+...
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~~-----~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQE-----LRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHHH-----TTCEEEEEESBGGGGGGCCSC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccccc-----CCCEEEEEcCCHHHHHHcCCC
Confidence 886521 12223345677889999999996 999999999998765 22221 689999999999998876533
Q ss_pred CceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhHhcCCChHHHHHHHHHHHhhhhc-C
Q 037627 330 AYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVLGGLLSMKKPQEWRRVRDHLWQHLKN-D 408 (858)
Q Consensus 330 ~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~~~~~w~~~~~~l~~~~~~-~ 408 (858)
...++|++|+.+||++||.+.++.... ++.+++++++|+++|+|+||||+++|+.++.+. |..+ +.+...... .
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~-~~l~~~l~~~~ 359 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKM-AQLNNKLESRG 359 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHH-HHHHHHHHHHC
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccch---HHHH-HHhHHHhhccc
Confidence 367999999999999999999876532 467788999999999999999999999997663 4433 344333322 2
Q ss_pred ccchhhHHHhhhccCcHHHHHHHh-----------HhcCCCCCceeCHHHHHHHHHHc--CccccCC-CCCHHHHHHHHH
Q 037627 409 CIHISSLLNLSFRNLSHELKLCFL-----------YLGLFPEDFEINVQTLIRLLVAE--GFIQQDT-DRSTEEVAGEIL 474 (858)
Q Consensus 409 ~~~i~~~l~~s~~~L~~~~k~~f~-----------~la~fp~~~~i~~~~l~~~w~ae--g~i~~~~-~~~~~~~~~~~l 474 (858)
...+..++.+||+.||++.|.||. |||+||+++.|+ +++|+|+ ||+.... +...+++++ +|
T Consensus 360 ~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l 434 (549)
T 2a5y_B 360 LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RL 434 (549)
T ss_dssp SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HH
T ss_pred HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HH
Confidence 356889999999999999999999 999999999998 7899999 9997655 556677776 99
Q ss_pred HHHHhcccccccccCCCcEeEEEEcHhHHHHHHHHhcccCc
Q 037627 475 DELINRSLIQIDKRCWGRIATCRVHDLLRDLAIEQAKKIKF 515 (858)
Q Consensus 475 ~~L~~~~ll~~~~~~~~~~~~~~~H~lir~~~~~~~~~~~~ 515 (858)
++|+++||++..... ....|+|||+||+||++++.++.+
T Consensus 435 ~~L~~rsLl~~~~~~--~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 435 KRLSKRGALLSGKRM--PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHTTTBSSCSEEECS--SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHcCCeeEecCC--CceEEEeChHHHHHHHHHHHHHHH
Confidence 999999999986522 346799999999999988876543
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.9e-37 Score=394.20 Aligned_cols=321 Identities=20% Similarity=0.293 Sum_probs=256.7
Q ss_pred ccCCCcCCceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccc-cCCc-ceEEEEEeCCCCC--HH
Q 037627 169 ATSFSIEGNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDV-KNKF-DRCAWVSVSQDYD--TK 244 (858)
Q Consensus 169 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~-~~~f-~~~~wv~~~~~~~--~~ 244 (858)
...+..++.||||++++++|.+.|...+...++|+|+||||+||||||++++++.+. ..+| +.++|+++++..+ ..
T Consensus 117 ~~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 117 GGVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp TTCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 334455678999999999999999876667899999999999999999999996433 4445 7788999988543 33
Q ss_pred HHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCc--eEEEEEEcCCChhhHHHHHhhCCCCCCCcEEEEEeCchhH
Q 037627 245 DLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGK--SYLVVVDDAWQKETWESLKRAFPDNKNGSRVIITTRIKEV 322 (858)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~LlvlDd~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~~ 322 (858)
..+..++..+............+.+.+.+.++..+.++ |+||||||+|+.+.|..+ ++|++||||||++.+
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~ 269 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSV 269 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTT
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHH
Confidence 44666666666543222223345678888999999877 999999999988765543 568999999999998
Q ss_pred HhhcCCCCceeecCC-CChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhHhcCCChHHHHHHHHHH
Q 037627 323 AERSDENAYAHKLRF-LRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVLGGLLSMKKPQEWRRVRDHL 401 (858)
Q Consensus 323 ~~~~~~~~~~~~l~~-L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~~~~~w~~~~~~l 401 (858)
+.........+.+.+ |+++||++||...++.. .+..++.+++|+++|+|+||||+++|++++.++ ..|...++.+
T Consensus 270 ~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l 345 (1249)
T 3sfz_A 270 TDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQL 345 (1249)
T ss_dssp TTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHH
T ss_pred HHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHH
Confidence 865444447889996 99999999999988543 334456799999999999999999999998775 4688888887
Q ss_pred HhhhhcC--------ccchhhHHHhhhccCcHHHHHHHhHhcCCCCCceeCHHHHHHHHHHcCccccCCCCCHHHHHHHH
Q 037627 402 WQHLKND--------CIHISSLLNLSFRNLSHELKLCFLYLGLFPEDFEINVQTLIRLLVAEGFIQQDTDRSTEEVAGEI 473 (858)
Q Consensus 402 ~~~~~~~--------~~~i~~~l~~s~~~L~~~~k~~f~~la~fp~~~~i~~~~l~~~w~aeg~i~~~~~~~~~~~~~~~ 473 (858)
....... ...+..++.+||+.|++++|.||++||+||+++.|+.+.++.+|.++ ++.++++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~ 414 (1249)
T 3sfz_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDI 414 (1249)
T ss_dssp HSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHH
T ss_pred hhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHHH
Confidence 6443111 14689999999999999999999999999999999999999999443 4668999
Q ss_pred HHHHHhcccccccccCCCcEeEEEEcHhHHHHHHHHhccc
Q 037627 474 LDELINRSLIQIDKRCWGRIATCRVHDLLRDLAIEQAKKI 513 (858)
Q Consensus 474 l~~L~~~~ll~~~~~~~~~~~~~~~H~lir~~~~~~~~~~ 513 (858)
+++|+++||++... +++...|+||+++|+|+++++.++
T Consensus 415 l~~L~~~sl~~~~~--~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 415 LQEFVNKSLLFCNR--NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHTTSCEEEE--SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHhccceEEec--CCCceEEEecHHHHHHHHhhhhHH
Confidence 99999999998654 334457999999999999987654
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=5.5e-37 Score=351.44 Aligned_cols=289 Identities=18% Similarity=0.226 Sum_probs=228.0
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcce-EEEEEeCCCCCHHHHHHHHHHhc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDR-CAWVSVSQDYDTKDLLLRIIRSF 254 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l 254 (858)
+..|||+.++++|.++|...+ ..++|+|+||||+||||||++++++.+++.+|+. ++|+++++.++...++..++..+
T Consensus 128 k~~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345999999999999998643 3789999999999999999999987678889975 99999999999888888887754
Q ss_pred cccccc--hh-----hhhccHHHHHHHHHHHh---cCceEEEEEEcCCChhhHHHHHhhCCCCCCCcEEEEEeCchhHHh
Q 037627 255 KINVLT--RE-----LEEMREEDLERYLHNCL---QGKSYLVVVDDAWQKETWESLKRAFPDNKNGSRVIITTRIKEVAE 324 (858)
Q Consensus 255 ~~~~~~--~~-----~~~~~~~~~~~~l~~~l---~~~~~LlvlDd~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~~~~ 324 (858)
+...+. .. ....+.+.+...+++.+ .++|+||||||+|+.+.|+.+. +||+||||||++.++.
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~ 279 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTD 279 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHH
T ss_pred hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHH
Confidence 432100 00 01112345566666655 6899999999999988887763 5899999999998875
Q ss_pred hcCCCCceeecC------CCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhHhcCC--ChHHHHH
Q 037627 325 RSDENAYAHKLR------FLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVLGGLLSMK--KPQEWRR 396 (858)
Q Consensus 325 ~~~~~~~~~~l~------~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~--~~~~w~~ 396 (858)
.+... ..+.++ +|+.+||++||.+..... . .+...+| |+|+||||+++|+.|+.+ +...|..
T Consensus 280 ~l~g~-~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~---~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~ 349 (1221)
T 1vt4_I 280 FLSAA-TTTHISLDHHSMTLTPDEVKSLLLKYLDCR---P---QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKH 349 (1221)
T ss_dssp HHHHH-SSCEEEECSSSSCCCHHHHHHHHHHHHCCC---T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred hcCCC-eEEEecCccccCCcCHHHHHHHHHHHcCCC---H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhc
Confidence 33221 245555 899999999999985322 1 2233333 999999999999999877 5777864
Q ss_pred HHHHHHhhhhcCccchhhHHHhhhccCcHHH-HHHHhHhcCCCCCceeCHHHHHHHHHHcCccccCCCCCHHHHHHHHHH
Q 037627 397 VRDHLWQHLKNDCIHISSLLNLSFRNLSHEL-KLCFLYLGLFPEDFEINVQTLIRLLVAEGFIQQDTDRSTEEVAGEILD 475 (858)
Q Consensus 397 ~~~~l~~~~~~~~~~i~~~l~~s~~~L~~~~-k~~f~~la~fp~~~~i~~~~l~~~w~aeg~i~~~~~~~~~~~~~~~l~ 475 (858)
. ....+..++.+||+.||+++ |.||++||+||+++.|+.+.++.+|+++| ++.++.+|+
T Consensus 350 ~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe~~L~ 409 (1221)
T 1vt4_I 350 V----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVMVVVN 409 (1221)
T ss_dssp C----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHHHHHH
T ss_pred C----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHHHHHH
Confidence 2 23568999999999999999 99999999999999999999999998776 235888999
Q ss_pred HHHhcccccccccCCCcEeEEEEcHhHHHHH
Q 037627 476 ELINRSLIQIDKRCWGRIATCRVHDLLRDLA 506 (858)
Q Consensus 476 ~L~~~~ll~~~~~~~~~~~~~~~H~lir~~~ 506 (858)
+|+++||++... ....|+|||++++++
T Consensus 410 eLvdRSLLq~d~----~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 410 KLHKYSLVEKQP----KESTISIPSIYLELK 436 (1221)
T ss_dssp HHHTSSSSSBCS----SSSEEBCCCHHHHHH
T ss_pred HHHhhCCEEEeC----CCCEEEehHHHHHHh
Confidence 999999998742 235799999999955
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=6.4e-35 Score=339.15 Aligned_cols=311 Identities=21% Similarity=0.331 Sum_probs=239.2
Q ss_pred CcCCceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccc-cCCc-ceEEEEEeCCCCCHHHHHHHH
Q 037627 173 SIEGNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDV-KNKF-DRCAWVSVSQDYDTKDLLLRI 250 (858)
Q Consensus 173 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~~~i 250 (858)
..++.||||+.++++|.+.|....+..++|+|+|+||+||||||.+++++... +.+| +.++|++++.. +...++..+
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l 199 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKL 199 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHH
Confidence 34577999999999999999865556899999999999999999999986544 7788 58999999765 344444444
Q ss_pred ---HHhccccccchhhhhccHHHHHHHHHHHhcC--ceEEEEEEcCCChhhHHHHHhhCCCCCCCcEEEEEeCchhHHhh
Q 037627 251 ---IRSFKINVLTRELEEMREEDLERYLHNCLQG--KSYLVVVDDAWQKETWESLKRAFPDNKNGSRVIITTRIKEVAER 325 (858)
Q Consensus 251 ---~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~LlvlDd~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~~~~~ 325 (858)
+..++...........+.+.+...+...+.+ +++||||||+|+...++. + ++|++||||||++.++..
T Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~----l---~~~~~ilvTsR~~~~~~~ 272 (591)
T 1z6t_A 200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA----F---DSQCQILLTTRDKSVTDS 272 (591)
T ss_dssp HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT----T---CSSCEEEEEESCGGGGTT
T ss_pred HHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH----h---cCCCeEEEECCCcHHHHh
Confidence 3344321111111223456677777777765 789999999998765442 2 568999999999988765
Q ss_pred cCCCCceeec---CCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhHhcCCChHHHHHHHHHHH
Q 037627 326 SDENAYAHKL---RFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVLGGLLSMKKPQEWRRVRDHLW 402 (858)
Q Consensus 326 ~~~~~~~~~l---~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l~~~~~~~w~~~~~~l~ 402 (858)
... ..+.+ ++|+.+|+++||...++.. .....+.+.+|+++|+|+|+||+++|+.++... ..|...++.+.
T Consensus 273 ~~~--~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~ 346 (591)
T 1z6t_A 273 VMG--PKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQ 346 (591)
T ss_dssp CCS--CEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHH
T ss_pred cCC--CceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 432 23343 6899999999999988642 223356789999999999999999999998763 36888888776
Q ss_pred hhhhc--------CccchhhHHHhhhccCcHHHHHHHhHhcCCCCCceeCHHHHHHHHHHcCccccCCCCCHHHHHHHHH
Q 037627 403 QHLKN--------DCIHISSLLNLSFRNLSHELKLCFLYLGLFPEDFEINVQTLIRLLVAEGFIQQDTDRSTEEVAGEIL 474 (858)
Q Consensus 403 ~~~~~--------~~~~i~~~l~~s~~~L~~~~k~~f~~la~fp~~~~i~~~~l~~~w~aeg~i~~~~~~~~~~~~~~~l 474 (858)
..... ...++..++..||+.||++.|.||.++|+||+++.|+.+.+..+|.+ ..+.+..++
T Consensus 347 ~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~-----------~~~~~~~~l 415 (591)
T 1z6t_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDM-----------ETEEVEDIL 415 (591)
T ss_dssp SCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTC-----------CHHHHHHHH
T ss_pred HhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhcc-----------CHHHHHHHH
Confidence 43211 11468899999999999999999999999999999999999999943 234578899
Q ss_pred HHHHhcccccccccCCCcEeEEEEcHhHHHHHHHHh
Q 037627 475 DELINRSLIQIDKRCWGRIATCRVHDLLRDLAIEQA 510 (858)
Q Consensus 475 ~~L~~~~ll~~~~~~~~~~~~~~~H~lir~~~~~~~ 510 (858)
++|+++||++... ++....|+||+++|+++++..
T Consensus 416 ~~L~~~~Ll~~~~--~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 416 QEFVNKSLLFCDR--NGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHTTSSEEEE--ETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHhCcCeEEec--CCCccEEEEcHHHHHHHHhhh
Confidence 9999999998644 234467999999999999884
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1.7e-23 Score=226.26 Aligned_cols=294 Identities=18% Similarity=0.212 Sum_probs=230.3
Q ss_pred CCeeEEEEEecccCCCCCCCCCCCCccccccCCeeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCc
Q 037627 528 SSCRRQAVHFRIMGDWGLGHCNPRSSSLLLFNQRVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPS 607 (858)
Q Consensus 528 ~~~r~l~~~~~~~~~~~~~~~~~~lr~l~~~~~r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~ 607 (858)
...+++.+..+....++. ...+..| ++|++++|. +. .+|. +..+++|++|++++|.++.+|
T Consensus 44 ~~L~~L~l~~~~i~~~~~---~~~~~~L-----~~L~l~~n~-------i~--~~~~-~~~l~~L~~L~L~~n~i~~~~- 104 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQG---IEYLTNL-----EYLNLNGNQ-------IT--DISP-LSNLVKLTNLYIGTNKITDIS- 104 (347)
T ss_dssp TTCSEEECCSSCCCCCTT---GGGCTTC-----CEEECCSSC-------CC--CCGG-GTTCTTCCEEECCSSCCCCCG-
T ss_pred ccccEEEEeCCccccchh---hhhcCCc-----cEEEccCCc-------cc--cchh-hhcCCcCCEEEccCCcccCch-
Confidence 456777776554444432 2223333 888999998 77 7776 999999999999999999886
Q ss_pred ccccCCCCcEEeccccccccccchhhhcccccccccc----ccccccCCCCCccccccceeecccccccCcccccCCCee
Q 037627 608 CIAKLQRLQTLDISGNMAFMELPREICELKELRHLIG----NFTGTLNIENLSNLQTLKYVERGSWAEINPEKLVNLRDL 683 (858)
Q Consensus 608 ~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~----~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L 683 (858)
.+.++++|++|++++| .+..+|. +..+++|++|+. .......+..+++|+.|++++|.......+..+++|+.|
T Consensus 105 ~~~~l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L 182 (347)
T 4fmz_A 105 ALQNLTNLRELYLNED-NISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSL 182 (347)
T ss_dssp GGTTCTTCSEEECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred HHcCCCcCCEEECcCC-cccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEE
Confidence 6999999999999999 4555665 889999999942 233444688999999999999987777668899999999
Q ss_pred EEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEeccc
Q 037627 684 RIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSH 762 (858)
Q Consensus 684 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~ 762 (858)
++.+|..... ..+..+++|+.|++++|..... ..+..+++|+.|++++| +..++. +.. +++|+.|+|++|.
T Consensus 183 ~l~~n~l~~~---~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~L~~L~l~~n~l~~~~~-~~~-l~~L~~L~l~~n~ 254 (347)
T 4fmz_A 183 SLNYNQIEDI---SPLASLTSLHYFTAYVNQITDI---TPVANMTRLNSLKIGNNKITDLSP-LAN-LSQLTWLEIGTNQ 254 (347)
T ss_dssp ECTTSCCCCC---GGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCCEEECCSSCCCCCGG-GTT-CTTCCEEECCSSC
T ss_pred EccCCccccc---ccccCCCccceeecccCCCCCC---chhhcCCcCCEEEccCCccCCCcc-hhc-CCCCCEEECCCCc
Confidence 9999875543 2378899999999999877644 33778899999999996 666665 555 7999999999999
Q ss_pred CCCCCccccCCCCCCCeeEeeccccCCceEEECCCCccccceeeecCCCCCCeEEEccCccccccceeecccccCC-CCc
Q 037627 763 LKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLNDLAQWQVEDGAMPILRGLRVTNAYKLK-IPE 841 (858)
Q Consensus 763 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~L~-lp~ 841 (858)
++.. +.+..+++|+.|++++|.+++.. ....+++|+.|++++|.-....+.....+++|+.|++++|+ ++ +|+
T Consensus 255 l~~~--~~~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~ 328 (347)
T 4fmz_A 255 ISDI--NAVKDLTKLKMLNVGSNQISDIS---VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP 328 (347)
T ss_dssp CCCC--GGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG
T ss_pred cCCC--hhHhcCCCcCEEEccCCccCCCh---hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC
Confidence 8763 57899999999999999988742 34578999999999875333333445678999999999996 66 554
Q ss_pred ccCCCCCCceecCCCC
Q 037627 842 RLKSIPLPTEWECDEN 857 (858)
Q Consensus 842 ~l~~L~~L~~~~c~~N 857 (858)
+..++.|+.++.++|
T Consensus 329 -~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 329 -LASLSKMDSADFANQ 343 (347)
T ss_dssp -GGGCTTCSEESSSCC
T ss_pred -hhhhhccceeehhhh
Confidence 777777777777766
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=6.3e-24 Score=251.49 Aligned_cols=283 Identities=13% Similarity=0.123 Sum_probs=170.1
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCc-ccc--cCcccccCC-------CCcEEeccccccccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAH-IDV--IPSCIAKLQ-------RLQTLDISGNMAFMELP 630 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~-i~~--lp~~l~~l~-------~L~~L~L~~n~~~~~lp 630 (858)
++|+|++|.. .+ .+|..|+++++|++|+|++|+ ++. +|..+.+++ +|++|++++|.+. .+|
T Consensus 494 ~~L~Ls~N~l------~~--~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip 564 (876)
T 4ecn_A 494 TDVELYNCPN------MT--QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFP 564 (876)
T ss_dssp CEEEEESCTT------CC--SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCC
T ss_pred CEEECcCCCC------Cc--cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccC
Confidence 6666666651 22 566666666677777776665 553 565555444 6777777666433 666
Q ss_pred h--hhhccccccccc---cccccccCCCCCccccccceeeccccccc-CcccccC-CCeeEEeecccccccchhhhhcCC
Q 037627 631 R--EICELKELRHLI---GNFTGTLNIENLSNLQTLKYVERGSWAEI-NPEKLVN-LRDLRIISKYQEEEFSFKSIAYLK 703 (858)
Q Consensus 631 ~--~~~~l~~L~~L~---~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~l~~-L~~L~l~~~~~~~~~~~~~l~~l~ 703 (858)
. .++.+++|+.|+ |.+.....++.+++|+.|++++|.....+ .+..+++ |+.|++++|... .+| ..+..++
T Consensus 565 ~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp-~~~~~~~ 642 (876)
T 4ecn_A 565 ASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIP-NIFNAKS 642 (876)
T ss_dssp CHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCC-SCCCTTC
T ss_pred ChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCc-hhhhccc
Confidence 6 666666666662 23332225666667777777666644222 2445566 677777666644 344 4444443
Q ss_pred --CCCeEEeeccCCccc-cCCC-CCC--CCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCC---
Q 037627 704 --NLQLLSIRLSDDTCF-DSLQ-PLS--DCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEK--- 773 (858)
Q Consensus 704 --~L~~L~l~~~~~~~~-~~~~-~l~--~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~--- 773 (858)
+|+.|++++|.+... +.++ .+. .+++|+.|++++| +..+|.+++..+++|+.|+|++|.++..+...+..
T Consensus 643 ~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~ 722 (876)
T 4ecn_A 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG 722 (876)
T ss_dssp SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTS
T ss_pred cCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccc
Confidence 366666666654321 1111 111 3347888888875 66778777755688888888888877433333322
Q ss_pred ----CCCCCeeEeeccccCCceEEECCC--CccccceeeecCCCCCCeEEEccCccccccceeecc------cccCC-CC
Q 037627 774 ----LPNLTILDLGLKSYGGKKMICTTK--GFHLLEILQLIDLNDLAQWQVEDGAMPILRGLRVTN------AYKLK-IP 840 (858)
Q Consensus 774 ----l~~L~~L~L~~n~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~------c~~L~-lp 840 (858)
+++|+.|+|++|.++. ++.... .+++|+.|++++| .+..++.....+++|+.|++++ |.... +|
T Consensus 723 ~l~nl~~L~~L~Ls~N~L~~--lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip 799 (876)
T 4ecn_A 723 NYKNTYLLTTIDLRFNKLTS--LSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799 (876)
T ss_dssp CCTTGGGCCEEECCSSCCCC--CCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCC
T ss_pred cccccCCccEEECCCCCCcc--chHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCcccccccccCh
Confidence 2378888888887763 222222 6778888888764 4555666666777777777766 32233 77
Q ss_pred cccCCCCCCceecCCCC
Q 037627 841 ERLKSIPLPTEWECDEN 857 (858)
Q Consensus 841 ~~l~~L~~L~~~~c~~N 857 (858)
..+.+++.|+.++.+.|
T Consensus 800 ~~l~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 800 TGITTCPSLIQLQIGSN 816 (876)
T ss_dssp TTGGGCSSCCEEECCSS
T ss_pred HHHhcCCCCCEEECCCC
Confidence 77777777777666665
No 7
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=3.8e-23 Score=232.61 Aligned_cols=270 Identities=21% Similarity=0.258 Sum_probs=148.2
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhcccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELR 640 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~ 640 (858)
++|++++|. +. .++. ++++++|++|++++|.++.+|. +.++++|++|++++|. +..+| .+..+++|+
T Consensus 93 ~~L~l~~n~-------l~--~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~ 159 (466)
T 1o6v_A 93 VDILMNNNQ-------IA--DITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQ 159 (466)
T ss_dssp CEEECCSSC-------CC--CCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCS
T ss_pred CEEECCCCc-------cc--cChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCc-cCCCh-hhccCCccc
Confidence 666676666 55 5554 6777777777777777776654 6677777777777773 33343 355666666
Q ss_pred ccc--cccccccCCCCCccccccceeecccccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccc
Q 037627 641 HLI--GNFTGTLNIENLSNLQTLKYVERGSWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCF 718 (858)
Q Consensus 641 ~L~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 718 (858)
+|. +.......+.++++|+.|++++|.......+..+++|+.|++.+|......+ +..+++|+.|++++|....+
T Consensus 160 ~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~ 236 (466)
T 1o6v_A 160 QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI 236 (466)
T ss_dssp EEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC
T ss_pred EeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccc
Confidence 552 2222233455666666666666665444445555666666666554333221 33444455555544433321
Q ss_pred c-------------------CCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCC
Q 037627 719 D-------------------SLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLT 778 (858)
Q Consensus 719 ~-------------------~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 778 (858)
+ ....+..+++|+.|++++| +..+|. +.. +++|+.|+|++|.+++..+ +..+++|+
T Consensus 237 ~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~-l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 312 (466)
T 1o6v_A 237 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAG-LTALTNLELNENQLEDISP--ISNLKNLT 312 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTT-CTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc-ccC-CCccCeEEcCCCcccCchh--hcCCCCCC
Confidence 1 1112444555555555553 333333 333 4566666666666554322 55666666
Q ss_pred eeEeeccccCCceEEECCCCccccceeeecCCCCCCeEEEccCccccccceeecccccCC-CCcccCCCCCCceecCCCC
Q 037627 779 ILDLGLKSYGGKKMICTTKGFHLLEILQLIDLNDLAQWQVEDGAMPILRGLRVTNAYKLK-IPERLKSIPLPTEWECDEN 857 (858)
Q Consensus 779 ~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~L~-lp~~l~~L~~L~~~~c~~N 857 (858)
.|+|++|.+++.. ....+++|+.|++++| .+..+ .....+++|+.|++++|+ +. +++ +..++.|+.++.+.|
T Consensus 313 ~L~L~~n~l~~~~---~~~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 313 YLTLYFNNISDIS---PVSSLTKLQRLFFYNN-KVSDV-SSLANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQ 385 (466)
T ss_dssp EEECCSSCCSCCG---GGGGCTTCCEEECCSS-CCCCC-GGGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCE
T ss_pred EEECcCCcCCCch---hhccCccCCEeECCCC-ccCCc-hhhccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCC
Confidence 6666666665432 1345666666666664 34443 234566777777777774 44 333 566666666665543
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=2.4e-23 Score=243.21 Aligned_cols=157 Identities=16% Similarity=0.128 Sum_probs=97.0
Q ss_pred hhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCCh--hhhhccCCccEEEEecccCCCCCccccCC
Q 037627 697 KSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPE--DLHEVLPNLECLSLKKSHLKEDPMPKLEK 773 (858)
Q Consensus 697 ~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 773 (858)
..+..+++|+.|++++|.....+ ..+..+++|+.|++++| +...+. .+.. +++|+.|+|++|.+++..|..+.+
T Consensus 370 ~~~~~~~~L~~L~L~~n~l~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~ 446 (606)
T 3vq2_A 370 YSDLGTNSLRHLDLSFNGAIIMS--ANFMGLEELQHLDFQHSTLKRVTEFSAFLS-LEKLLYLDISYTNTKIDFDGIFLG 446 (606)
T ss_dssp HHHHCCSCCCEEECCSCSEEEEC--CCCTTCTTCCEEECTTSEEESTTTTTTTTT-CTTCCEEECTTSCCEECCTTTTTT
T ss_pred hhhccCCcccEeECCCCccccch--hhccCCCCCCeeECCCCccCCccChhhhhc-cccCCEEECcCCCCCccchhhhcC
Confidence 55666777777777776554432 45667778888888875 333332 3333 677888888888777767777777
Q ss_pred CCCCCeeEeeccccCCceEEECCCCccccceeeecCCCCCCeEE-EccCccccccceeecccccCC-CCcccCCCCCCce
Q 037627 774 LPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLNDLAQWQ-VEDGAMPILRGLRVTNAYKLK-IPERLKSIPLPTE 851 (858)
Q Consensus 774 l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c~~L~-lp~~l~~L~~L~~ 851 (858)
+++|+.|++++|.+.+...+.....+++|+.|++++|. +..++ .....+++|+.|++++|.... .|..+..++.|+.
T Consensus 447 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 525 (606)
T 3vq2_A 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525 (606)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCE
T ss_pred CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc-CCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCE
Confidence 77777777777777653333344556677777777643 43332 224456666666666663222 4555655555555
Q ss_pred ecCCCC
Q 037627 852 WECDEN 857 (858)
Q Consensus 852 ~~c~~N 857 (858)
++.+.|
T Consensus 526 L~l~~N 531 (606)
T 3vq2_A 526 LDCSFN 531 (606)
T ss_dssp EECTTS
T ss_pred EECCCC
Confidence 555544
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=1.5e-23 Score=250.43 Aligned_cols=217 Identities=25% Similarity=0.283 Sum_probs=135.4
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCccc-ccCcc-cccCCCCcEEeccccccccccchhhhccc-
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHID-VIPSC-IAKLQRLQTLDISGNMAFMELPREICELK- 637 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~-~lp~~-l~~l~~L~~L~L~~n~~~~~lp~~~~~l~- 637 (858)
++|+|++|. +. +.+|..|+++++|++|++++|.+. .+|.. +.++++|++|++++|.+.+.+|..+..++
T Consensus 297 ~~L~Ls~n~-------l~-~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 368 (768)
T 3rgz_A 297 TGLDLSGNH-------FY-GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368 (768)
T ss_dssp SEEECCSSE-------EE-ECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTT
T ss_pred CEEECcCCc-------CC-CccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhc
Confidence 555555555 22 134555566666666666666655 55544 55566666666666644445555555544
Q ss_pred cccccc-----------------------------cccc--cccCCCCCccccccceeecccccc--cCcccccCCCeeE
Q 037627 638 ELRHLI-----------------------------GNFT--GTLNIENLSNLQTLKYVERGSWAE--INPEKLVNLRDLR 684 (858)
Q Consensus 638 ~L~~L~-----------------------------~~~~--~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~ 684 (858)
+|+.|+ +.+. .+..+.++++|+.|++++|..... ..+..+++|+.|+
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence 444441 1111 222455666666666666654322 2345666677777
Q ss_pred EeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CC-CCChhhhhccCCccEEEEeccc
Q 037627 685 IISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IE-KLPEDLHEVLPNLECLSLKKSH 762 (858)
Q Consensus 685 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~-~~p~~~~~~l~~L~~L~L~~n~ 762 (858)
+.+|......+ ..+..+++|+.|++++|..... ....+..+++|+.|++++| +. .+|.++.. +++|+.|+|++|.
T Consensus 449 L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 449 LWLNMLEGEIP-QELMYVKTLETLILDFNDLTGE-IPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNS 525 (768)
T ss_dssp CCSSCCCSCCC-GGGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCSSC
T ss_pred CCCCcccCcCC-HHHcCCCCceEEEecCCcccCc-CCHHHhcCCCCCEEEccCCccCCcCChHHhc-CCCCCEEECCCCc
Confidence 77776665566 6677777777777777765533 3345667788888888886 33 57777776 6888888888888
Q ss_pred CCCCCccccCCCCCCCeeEeeccccC
Q 037627 763 LKEDPMPKLEKLPNLTILDLGLKSYG 788 (858)
Q Consensus 763 l~~~~~~~l~~l~~L~~L~L~~n~~~ 788 (858)
+++.+|..++.+++|+.|+|++|.++
T Consensus 526 l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 526 FSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp CEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred ccCcCCHHHcCCCCCCEEECCCCccC
Confidence 87777888888888888888887765
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=1.2e-23 Score=245.41 Aligned_cols=282 Identities=16% Similarity=0.172 Sum_probs=169.9
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCc-cc--ccCcccccC------CCCcEEeccccccccccch
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAH-ID--VIPSCIAKL------QRLQTLDISGNMAFMELPR 631 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~-i~--~lp~~l~~l------~~L~~L~L~~n~~~~~lp~ 631 (858)
++|+|++|.. .+ .+|..|+++++|++|++++|. ++ .+|..++++ ++|++|++++|.+. .+|.
T Consensus 252 ~~L~L~~n~l------~~--~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~ 322 (636)
T 4eco_A 252 TDVEVYNCPN------LT--KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPV 322 (636)
T ss_dssp CEEEEECCTT------CS--SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCC
T ss_pred CEEEecCCcC------Cc--cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCc
Confidence 7777777762 23 677777788888888888877 76 377777665 77888888877444 7777
Q ss_pred --hhhccccccccc---ccccc-ccCCCCCccccccceeeccccccc-CcccccC-CCeeEEeecccccccchhhhhcCC
Q 037627 632 --EICELKELRHLI---GNFTG-TLNIENLSNLQTLKYVERGSWAEI-NPEKLVN-LRDLRIISKYQEEEFSFKSIAYLK 703 (858)
Q Consensus 632 --~~~~l~~L~~L~---~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~-~~~~l~~-L~~L~l~~~~~~~~~~~~~l~~l~ 703 (858)
.++.+++|++|+ +.+.+ ...++.+++|+.|++++|...... .+..+++ |+.|++++|... .++ ..+..++
T Consensus 323 ~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp-~~~~~~~ 400 (636)
T 4eco_A 323 ETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIP-NIFDAKS 400 (636)
T ss_dssp HHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCC-SCCCTTC
T ss_pred hhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccc-hhhhhcc
Confidence 777777777772 33331 116667777777777777644332 2456666 777777777655 444 4444433
Q ss_pred --CCCeEEeeccCCccccCCCCCC-------CCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCC
Q 037627 704 --NLQLLSIRLSDDTCFDSLQPLS-------DCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEK 773 (858)
Q Consensus 704 --~L~~L~l~~~~~~~~~~~~~l~-------~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 773 (858)
+|+.|++++|.+... ....+. .+++|+.|++++| +..+|..++..+++|+.|+|++|.++..++..+..
T Consensus 401 l~~L~~L~Ls~N~l~~~-~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 479 (636)
T 4eco_A 401 VSVMSAIDFSYNEIGSV-DGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD 479 (636)
T ss_dssp SSCEEEEECCSSCTTTT-TTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEE
T ss_pred cCccCEEECcCCcCCCc-chhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcc
Confidence 677777777655432 222233 4556777777764 55666666554566777777777666333333322
Q ss_pred C-------CCCCeeEeeccccCCceEEECCC--CccccceeeecCCCCCCeEEEccCccccccceeecc------cccCC
Q 037627 774 L-------PNLTILDLGLKSYGGKKMICTTK--GFHLLEILQLIDLNDLAQWQVEDGAMPILRGLRVTN------AYKLK 838 (858)
Q Consensus 774 l-------~~L~~L~L~~n~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~------c~~L~ 838 (858)
+ ++|+.|+|++|.++. ++.... .+++|+.|+++++ .+..+|.....+++|+.|++++ |....
T Consensus 480 ~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~ 556 (636)
T 4eco_A 480 ENENFKNTYLLTSIDLRFNKLTK--LSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556 (636)
T ss_dssp TTEECTTGGGCCEEECCSSCCCB--CCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCC
T ss_pred ccccccccCCccEEECcCCcCCc--cChhhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccc
Confidence 2 266666666666652 222222 5666666666653 3444555555566666666643 32233
Q ss_pred -CCcccCCCCCCceecCCCC
Q 037627 839 -IPERLKSIPLPTEWECDEN 857 (858)
Q Consensus 839 -lp~~l~~L~~L~~~~c~~N 857 (858)
+|..+..++.|+.++.+.|
T Consensus 557 ~~p~~l~~l~~L~~L~Ls~N 576 (636)
T 4eco_A 557 EWPEGITLCPSLTQLQIGSN 576 (636)
T ss_dssp CCCTTGGGCSSCCEEECCSS
T ss_pred cChHHHhcCCCCCEEECCCC
Confidence 5666655666655555554
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=1e-23 Score=246.05 Aligned_cols=278 Identities=13% Similarity=0.131 Sum_probs=225.2
Q ss_pred eeeeccCCccccccccCCCCC------------------cccccc--CCcccceEeccCCccc-ccCcccccCCCCcEEe
Q 037627 561 RVLNFEGVVSNVLCSVGGCYN------------------LPEEMV--KLVNLKYLRLTNAHID-VIPSCIAKLQRLQTLD 619 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~------------------lp~~~~--~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~ 619 (858)
++|+|++|. +. . +|..++ ++++|++|+|++|.+. .+|..+.++++|++|+
T Consensus 209 ~~L~Ls~n~-------l~--~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 209 RQFYMGNSP-------FV--AENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279 (636)
T ss_dssp CEEEEESCC-------CC--GGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred CEEECcCCc-------cc--cccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence 888999998 66 5 999999 9999999999999865 7899999999999999
Q ss_pred ccccc-ccc-ccchhhhcc------ccccccc---ccccc-cc--CCCCCccccccceeecccc-cccCcccccCCCeeE
Q 037627 620 ISGNM-AFM-ELPREICEL------KELRHLI---GNFTG-TL--NIENLSNLQTLKYVERGSW-AEINPEKLVNLRDLR 684 (858)
Q Consensus 620 L~~n~-~~~-~lp~~~~~l------~~L~~L~---~~~~~-~~--~~~~l~~L~~L~l~~~~~~-~~~~~~~l~~L~~L~ 684 (858)
+++|. +.+ .+|..++.+ ++|++|+ +.+.. +. .++++++|+.|++++|... ....+..+++|+.|+
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~ 359 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLN 359 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEE
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEE
Confidence 99997 666 799999887 8999993 44443 33 5889999999999999866 444677889999999
Q ss_pred EeecccccccchhhhhcCCC-CCeEEeeccCCccccCCCCCCC--CCCccEEEeccc-CC-CCChhhh-------hccCC
Q 037627 685 IISKYQEEEFSFKSIAYLKN-LQLLSIRLSDDTCFDSLQPLSD--CSYLIDLRLSGK-IE-KLPEDLH-------EVLPN 752 (858)
Q Consensus 685 l~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~l~~--l~~L~~L~l~~~-~~-~~p~~~~-------~~l~~ 752 (858)
+.+|... .++ ..+..+++ |+.|++++|.+..++ ..+.. +++|+.|++++| +. ..|.++. . +++
T Consensus 360 L~~N~l~-~lp-~~l~~l~~~L~~L~Ls~N~l~~lp--~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~-~~~ 434 (636)
T 4eco_A 360 LAYNQIT-EIP-ANFCGFTEQVENLSFAHNKLKYIP--NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK-GIN 434 (636)
T ss_dssp CCSSEEE-ECC-TTSEEECTTCCEEECCSSCCSSCC--SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCC-CCC
T ss_pred CCCCccc-ccc-HhhhhhcccCcEEEccCCcCcccc--hhhhhcccCccCEEECcCCcCCCcchhhhccccccccc-CCC
Confidence 9999866 566 77999999 999999999877543 33444 458999999996 43 3555554 4 579
Q ss_pred ccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECC--------CCccccceeeecCCCCCCeEEEccC--c
Q 037627 753 LECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTT--------KGFHLLEILQLIDLNDLAQWQVEDG--A 822 (858)
Q Consensus 753 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~--------~~~~~L~~L~l~~~~~l~~~~~~~~--~ 822 (858)
|+.|+|++|.++..++..+..+++|+.|+|++|.++.. +... ..+++|+.|++++| .+..++.... .
T Consensus 435 L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i--~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~ 511 (636)
T 4eco_A 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI--PKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATT 511 (636)
T ss_dssp EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBC--CSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTT
T ss_pred CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCc--CHHHhccccccccccCCccEEECcCC-cCCccChhhhhcc
Confidence 99999999999866656677899999999999998732 2111 12339999999985 5777776665 8
Q ss_pred cccccceeecccccCC-CCcccCCCCCCceecCCC
Q 037627 823 MPILRGLRVTNAYKLK-IPERLKSIPLPTEWECDE 856 (858)
Q Consensus 823 l~~L~~L~l~~c~~L~-lp~~l~~L~~L~~~~c~~ 856 (858)
+++|+.|++++| .++ +|..+..++.|+.++.+.
T Consensus 512 l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 512 LPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRN 545 (636)
T ss_dssp CTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCS
T ss_pred CCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCC
Confidence 999999999999 577 999888888888887743
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=3.3e-23 Score=234.32 Aligned_cols=281 Identities=20% Similarity=0.196 Sum_probs=174.0
Q ss_pred eeeeccCCccccccccCCCCCc-cccccCCcccceEeccCCccccc-CcccccCCCCcEEeccccccccccc-hhhhccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNL-PEEMVKLVNLKYLRLTNAHIDVI-PSCIAKLQRLQTLDISGNMAFMELP-REICELK 637 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~n~~~~~lp-~~~~~l~ 637 (858)
++|+|++|. +. .+ |..|.++++|++|+|++|.++.+ |..|.++++|++|+|++|. +..+| ..|..++
T Consensus 35 ~~L~L~~n~-------l~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 104 (477)
T 2id5_A 35 RLLDLGKNR-------IK--TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLS 104 (477)
T ss_dssp SEEECCSSC-------CC--EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCT
T ss_pred cEEECCCCc-------cc--eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCC
Confidence 667777776 55 44 34577777777777777777755 5667777777777777773 33444 3456777
Q ss_pred cccccc---ccccc--ccCCCCCccccccceeeccccccc--CcccccCCCeeEEeecccccccchhhhhcCCCCCeEEe
Q 037627 638 ELRHLI---GNFTG--TLNIENLSNLQTLKYVERGSWAEI--NPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSI 710 (858)
Q Consensus 638 ~L~~L~---~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 710 (858)
+|++|+ +.+.. +..+..+++|+.|++++|...... .+..+++|+.|++.+|......+ ..+..+++|+.|++
T Consensus 105 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l 183 (477)
T 2id5_A 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT-EALSHLHGLIVLRL 183 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH-HHHTTCTTCCEEEE
T ss_pred CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh-hHhcccCCCcEEeC
Confidence 777773 22222 235667777777777777643332 35566777777777776554444 56777777777777
Q ss_pred eccCCccccCCCCCCCCCCccEEEeccc--CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccC
Q 037627 711 RLSDDTCFDSLQPLSDCSYLIDLRLSGK--IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYG 788 (858)
Q Consensus 711 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~--~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 788 (858)
++|....+ ....+..+++|+.|+++++ ...+|..... ..+|+.|+|++|.++..++..+.++++|+.|+|++|.++
T Consensus 184 ~~n~i~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 184 RHLNINAI-RDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261 (477)
T ss_dssp ESCCCCEE-CTTCSCSCTTCCEEEEECCTTCCEECTTTTT-TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred CCCcCcEe-ChhhcccCcccceeeCCCCccccccCccccc-CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC
Confidence 77766554 3345666777777777763 3445555555 357777777777776555556777777777777777665
Q ss_pred CceEEECCCCccccceeeecCCCCCCeE-EEccCccccccceeecccccCC-CCc-ccCCCCCCceecCCCC
Q 037627 789 GKKMICTTKGFHLLEILQLIDLNDLAQW-QVEDGAMPILRGLRVTNAYKLK-IPE-RLKSIPLPTEWECDEN 857 (858)
Q Consensus 789 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~c~~L~-lp~-~l~~L~~L~~~~c~~N 857 (858)
+.. ......+++|+.|+++++ .+..+ +.....+++|+.|++++| .++ +|. .+..++.|+.++.+.|
T Consensus 262 ~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 262 TIE-GSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp EEC-TTSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSS
T ss_pred ccC-hhhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCC
Confidence 321 112345667777777764 34444 223445677777777777 455 544 4455566665555544
No 13
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=3.7e-23 Score=236.73 Aligned_cols=304 Identities=14% Similarity=0.094 Sum_probs=181.5
Q ss_pred CCCeeEEEEEecccCCCCCCCCCCCCccccccCCeeeeccCCccccccccCCCCCc-cccccCCcccceEeccCCccccc
Q 037627 527 SSSCRRQAVHFRIMGDWGLGHCNPRSSSLLLFNQRVLNFEGVVSNVLCSVGGCYNL-PEEMVKLVNLKYLRLTNAHIDVI 605 (858)
Q Consensus 527 ~~~~r~l~~~~~~~~~~~~~~~~~~lr~l~~~~~r~L~L~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~L~~n~i~~l 605 (858)
+...+++.+..+.....+. ..+.++..| ++|+|++|. +. .+ |..|+++++|++|+|++|.++.+
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~-~~~~~l~~L-----~~L~Ls~n~-------l~--~~~~~~~~~l~~L~~L~Ls~N~l~~l 84 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWT-SDILSLSKL-----RILIISHNR-------IQ--YLDISVFKFNQELEYLDLSHNKLVKI 84 (520)
T ss_dssp CTTCSEEECCSSCCCCCCH-HHHTTCTTC-----CEEECCSSC-------CC--EEEGGGGTTCTTCCEEECCSSCCCEE
T ss_pred cccccEEECCCCcccccCh-hhccccccc-----cEEecCCCc-------cC--CcChHHhhcccCCCEEecCCCceeec
Confidence 3567788887555544321 112233333 778888887 65 45 66788888888888888888888
Q ss_pred CcccccCCCCcEEecccccccc-ccchhhhccccccccc---cccccccCCCCCccc--cccceeeccc--cccc-----
Q 037627 606 PSCIAKLQRLQTLDISGNMAFM-ELPREICELKELRHLI---GNFTGTLNIENLSNL--QTLKYVERGS--WAEI----- 672 (858)
Q Consensus 606 p~~l~~l~~L~~L~L~~n~~~~-~lp~~~~~l~~L~~L~---~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~----- 672 (858)
|.. .+++|++|++++|.+.+ .+|..++.+++|++|+ +.+.. ..+..+++| +.|++++|.. ....
T Consensus 85 p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~ 161 (520)
T 2z7x_B 85 SCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ 161 (520)
T ss_dssp ECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG-GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTT
T ss_pred Ccc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch-hhccccccceeeEEEeeccccccccccccccc
Confidence 776 78888888888886554 4677888888888883 22222 233344444 5554444432 0000
Q ss_pred -----------------------------------------------------Cccc-----------------------
Q 037627 673 -----------------------------------------------------NPEK----------------------- 676 (858)
Q Consensus 673 -----------------------------------------------------~~~~----------------------- 676 (858)
.+..
T Consensus 162 ~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~ 241 (520)
T 2z7x_B 162 DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRIL 241 (520)
T ss_dssp TCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHH
T ss_pred ccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHH
Confidence 0001
Q ss_pred ----ccCCCeeEEeecccccccchhhh-----------------------------------------------------
Q 037627 677 ----LVNLRDLRIISKYQEEEFSFKSI----------------------------------------------------- 699 (858)
Q Consensus 677 ----l~~L~~L~l~~~~~~~~~~~~~l----------------------------------------------------- 699 (858)
.++|+.|++.+|...+.++ ..+
T Consensus 242 ~~~~~~~L~~L~l~~n~l~~~~p-~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 320 (520)
T 2z7x_B 242 QLVWHTTVWYFSISNVKLQGQLD-FRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP 320 (520)
T ss_dssp HHHHTSSCSEEEEEEEEEESCCC-CCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCC
T ss_pred HHhhhCcccEEEeecccccCccc-cchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccch
Confidence 1145555555554332222 222
Q ss_pred hcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCC---CChhhhhccCCccEEEEecccCCCCCc-cccCCC
Q 037627 700 AYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEK---LPEDLHEVLPNLECLSLKKSHLKEDPM-PKLEKL 774 (858)
Q Consensus 700 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~---~p~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l 774 (858)
..+++|+.|++++|..... .+..+..+++|+.|++++| +.. +|..+.. +++|+.|+|++|.+++..| ..+..+
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~-l~~L~~L~Ls~N~l~~~l~~~~~~~l 398 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDT-VFENCGHLTELETLILQMNQLKELSKIAEMTTQ-MKSLQQLDISQNSVSYDEKKGDCSWT 398 (520)
T ss_dssp SSCCCCCEEECCSSCCCTT-TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT-CTTCCEEECCSSCCBCCGGGCSCCCC
T ss_pred hhCCcccEEEeECCccChh-hhhhhccCCCCCEEEccCCccCccccchHHHhh-CCCCCEEECCCCcCCcccccchhccC
Confidence 3444555555555544332 2334555666666666664 332 2233333 5666666666666665233 335666
Q ss_pred CCCCeeEeeccccCCceEEECCCCc-cccceeeecCCCCCCeEEEccCccccccceeecccccCC-CCcc-cCCCCCCce
Q 037627 775 PNLTILDLGLKSYGGKKMICTTKGF-HLLEILQLIDLNDLAQWQVEDGAMPILRGLRVTNAYKLK-IPER-LKSIPLPTE 851 (858)
Q Consensus 775 ~~L~~L~L~~n~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~L~-lp~~-l~~L~~L~~ 851 (858)
++|+.|+|++|.+++.. +..+ ++|+.|++++| .++.++.....+++|+.|++++| .++ +|.. +..++.|+.
T Consensus 399 ~~L~~L~Ls~N~l~~~~----~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~ 472 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTI----FRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQK 472 (520)
T ss_dssp TTCCEEECCSSCCCGGG----GGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred ccCCEEECcCCCCCcch----hhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccE
Confidence 66777777666665421 1122 68888888875 56677666668899999999998 577 8886 888888888
Q ss_pred ecCCCC
Q 037627 852 WECDEN 857 (858)
Q Consensus 852 ~~c~~N 857 (858)
++.+.|
T Consensus 473 L~l~~N 478 (520)
T 2z7x_B 473 IWLHTN 478 (520)
T ss_dssp EECCSS
T ss_pred EECcCC
Confidence 887776
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=3.3e-23 Score=241.96 Aligned_cols=109 Identities=19% Similarity=0.185 Sum_probs=56.6
Q ss_pred CCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECCCCcccc
Q 037627 724 LSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLL 802 (858)
Q Consensus 724 l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L 802 (858)
+..+++|+.|++++| +..+|.++.. +++|++|+|++|.+++..+..+.++++|+.|++++|.+.+.........+++|
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCS-CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred hccccCCCEEeccCCccCCCChhhcc-cccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 455566666666664 5556665554 46666666666666555555566666666666666554432111123345555
Q ss_pred ceeeecCCCCCCeEEE---ccCccccccceeeccc
Q 037627 803 EILQLIDLNDLAQWQV---EDGAMPILRGLRVTNA 834 (858)
Q Consensus 803 ~~L~l~~~~~l~~~~~---~~~~l~~L~~L~l~~c 834 (858)
++|+++++ .+..... ....+++|+.|++++|
T Consensus 353 ~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n 386 (606)
T 3t6q_A 353 RELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYN 386 (606)
T ss_dssp CEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSC
T ss_pred CEEECCCC-ccccccCcchhcccCCCCCEEECCCC
Confidence 55555543 2333321 2233444455555444
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=3.8e-23 Score=227.16 Aligned_cols=295 Identities=14% Similarity=0.103 Sum_probs=211.7
Q ss_pred CCeeEEEEEecccCCCCCCCCCCCCccccccCCeeeeccCCccccccccCCCCCcc-ccccCCcccceEeccCCcccccC
Q 037627 528 SSCRRQAVHFRIMGDWGLGHCNPRSSSLLLFNQRVLNFEGVVSNVLCSVGGCYNLP-EEMVKLVNLKYLRLTNAHIDVIP 606 (858)
Q Consensus 528 ~~~r~l~~~~~~~~~~~~~~~~~~lr~l~~~~~r~L~L~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~L~~n~i~~lp 606 (858)
...+++.+..+....++.. .+..++.| ++|+|++|. +. .+| ..|..+++|++|+|++|.++.+|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~-~~~~l~~L-----~~L~L~~n~-------i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~ 109 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAA-LLDSFRQV-----ELLNLNDLQ-------IE--EIDTYAFAYAHTIQKLYMGFNAIRYLP 109 (390)
T ss_dssp CCCSEEEEESCEESEECTH-HHHHCCCC-----SEEECTTSC-------CC--EECTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCceEEEecCCchhhCChh-HhcccccC-----cEEECCCCc-------cc--ccChhhccCCCCcCEEECCCCCCCcCC
Confidence 4566777765555544432 11222222 777888877 65 555 46788888888888888888774
Q ss_pred -cccccCCCCcEEeccccccccccchh-hhccccccccc---cccccc--cCCCCCccccccceeecccccccCcccccC
Q 037627 607 -SCIAKLQRLQTLDISGNMAFMELPRE-ICELKELRHLI---GNFTGT--LNIENLSNLQTLKYVERGSWAEINPEKLVN 679 (858)
Q Consensus 607 -~~l~~l~~L~~L~L~~n~~~~~lp~~-~~~l~~L~~L~---~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~ 679 (858)
..+.++++|++|++++| .+..+|.. +..+++|++|+ +.+... ..+..+++|++|++++|..... .+..+++
T Consensus 110 ~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~ 187 (390)
T 3o6n_A 110 PHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPS 187 (390)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-CGGGCTT
T ss_pred HHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-ccccccc
Confidence 44778888888888888 44466654 57788888883 333332 2477888888888888875544 3667788
Q ss_pred CCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEE
Q 037627 680 LRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSL 758 (858)
Q Consensus 680 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L 758 (858)
|+.|++.+|.... +...++|+.|++++|.....+. ..+++|+.|++++| +... .++.. +++|+.|+|
T Consensus 188 L~~L~l~~n~l~~------~~~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~n~l~~~-~~l~~-l~~L~~L~L 255 (390)
T 3o6n_A 188 LFHANVSYNLLST------LAIPIAVEELDASHNSINVVRG----PVNVELTILKLQHNNLTDT-AWLLN-YPGLVEVDL 255 (390)
T ss_dssp CSEEECCSSCCSE------EECCSSCSEEECCSSCCCEEEC----CCCSSCCEEECCSSCCCCC-GGGGG-CTTCSEEEC
T ss_pred cceeecccccccc------cCCCCcceEEECCCCeeeeccc----cccccccEEECCCCCCccc-HHHcC-CCCccEEEC
Confidence 8888887775432 2344678888888887665422 23478999999996 4444 46666 799999999
Q ss_pred ecccCCCCCccccCCCCCCCeeEeeccccCCceEEECCCCccccceeeecCCCCCCeEEEccCccccccceeecccccCC
Q 037627 759 KKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLNDLAQWQVEDGAMPILRGLRVTNAYKLK 838 (858)
Q Consensus 759 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~L~ 838 (858)
++|.+++..|..+..+++|+.|+|++|.+++ ++.....+++|+.|++++| .+..++.....+++|+.|++++|+ ++
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~ 331 (390)
T 3o6n_A 256 SYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IV 331 (390)
T ss_dssp CSSCCCEEESGGGTTCSSCCEEECCSSCCCE--EECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CC
T ss_pred CCCcCCCcChhHccccccCCEEECCCCcCcc--cCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-cc
Confidence 9999988888899999999999999999875 3444567899999999986 577666666778999999999995 66
Q ss_pred -CCcccCCCCCCceecCCCC
Q 037627 839 -IPERLKSIPLPTEWECDEN 857 (858)
Q Consensus 839 -lp~~l~~L~~L~~~~c~~N 857 (858)
+| +..++.|+.++.+.|
T Consensus 332 ~~~--~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 332 TLK--LSTHHTLKNLTLSHN 349 (390)
T ss_dssp CCC--CCTTCCCSEEECCSS
T ss_pred eeC--chhhccCCEEEcCCC
Confidence 65 555666666666655
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=3e-23 Score=247.94 Aligned_cols=265 Identities=23% Similarity=0.239 Sum_probs=132.7
Q ss_pred CcccceEeccCCccc-ccCcccccC-CCCcEEeccccccccccchhhhccccccccc---cccccc--c-CCCCCccccc
Q 037627 589 LVNLKYLRLTNAHID-VIPSCIAKL-QRLQTLDISGNMAFMELPREICELKELRHLI---GNFTGT--L-NIENLSNLQT 660 (858)
Q Consensus 589 l~~L~~L~L~~n~i~-~lp~~l~~l-~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~---~~~~~~--~-~~~~l~~L~~ 660 (858)
+++|++|++++|.++ .+|..+.++ ++|++|++++|.+.+.+|..++.+++|++|+ +.+.+. . .+..+++|++
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~ 347 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCE
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCE
Confidence 333333333333333 344444332 5555555555544444555555555555552 222211 1 1445555555
Q ss_pred cceeecccccc--cCccccc-CCCeeEEeecccccccchhhhhc--CCCCCeEEeeccCCccccCCCCCCCCCCccEEEe
Q 037627 661 LKYVERGSWAE--INPEKLV-NLRDLRIISKYQEEEFSFKSIAY--LKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRL 735 (858)
Q Consensus 661 L~l~~~~~~~~--~~~~~l~-~L~~L~l~~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 735 (858)
|++++|..... ..+..++ +|+.|++++|......+ ..+.. +++|+.|++++|..... ....+..+++|+.|++
T Consensus 348 L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~-~~~~~~~~~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L 425 (768)
T 3rgz_A 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL-PNLCQNPKNTLQELYLQNNGFTGK-IPPTLSNCSELVSLHL 425 (768)
T ss_dssp EECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECC-TTTTCSTTCCCCEEECCSSEEEEE-CCGGGGGCTTCCEEEC
T ss_pred EeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcC-hhhhhcccCCccEEECCCCccccc-cCHHHhcCCCCCEEEC
Confidence 55555543211 1122232 44444444444333333 22222 34444454444433221 2233555666666666
Q ss_pred ccc-C-CCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECCCCccccceeeecCCCCC
Q 037627 736 SGK-I-EKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLNDL 813 (858)
Q Consensus 736 ~~~-~-~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l 813 (858)
++| + +.+|..+.. +++|+.|+|++|.+++..|..+..+++|+.|+|++|.+++. ++.....+++|+.|++++|.-.
T Consensus 426 s~N~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~ 503 (768)
T 3rgz_A 426 SFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE-IPSGLSNCTNLNWISLSNNRLT 503 (768)
T ss_dssp CSSEEESCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEEECCSSCCC
T ss_pred cCCcccCcccHHHhc-CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCc-CCHHHhcCCCCCEEEccCCccC
Confidence 664 2 245555555 46666666666666666666666666666666666666542 1222345566666666665433
Q ss_pred CeEEEccCccccccceeecccccCC-CCcccCCCCCCceecCCCC
Q 037627 814 AQWQVEDGAMPILRGLRVTNAYKLK-IPERLKSIPLPTEWECDEN 857 (858)
Q Consensus 814 ~~~~~~~~~l~~L~~L~l~~c~~L~-lp~~l~~L~~L~~~~c~~N 857 (858)
..++...+.+++|+.|++++|.... +|..+..++.|+.++.+.|
T Consensus 504 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 3455555566677777777664333 6666666666666655544
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=1.1e-22 Score=230.02 Aligned_cols=291 Identities=18% Similarity=0.123 Sum_probs=229.4
Q ss_pred cCCCeeEEEEEecccCCCCCCCCCCCCccccccCCeeeeccCCccccccccCCCCCc-cccccCCcccceEeccCCcccc
Q 037627 526 ISSSCRRQAVHFRIMGDWGLGHCNPRSSSLLLFNQRVLNFEGVVSNVLCSVGGCYNL-PEEMVKLVNLKYLRLTNAHIDV 604 (858)
Q Consensus 526 ~~~~~r~l~~~~~~~~~~~~~~~~~~lr~l~~~~~r~L~L~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~L~~n~i~~ 604 (858)
.+...+.+.+..+.+...+. ..+.++..| ++|+|++|. +. .+ |..|.++++|++|+|++|.++.
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~-~~~~~l~~L-----~~L~L~~n~-------i~--~~~~~~~~~l~~L~~L~L~~n~l~~ 94 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQ-DEFASFPHL-----EELELNENI-------VS--AVEPGAFNNLFNLRTLGLRSNRLKL 94 (477)
T ss_dssp CCTTCSEEECCSSCCCEECT-TTTTTCTTC-----CEEECTTSC-------CC--EECTTTTTTCTTCCEEECCSSCCCS
T ss_pred CCCCCcEEECCCCccceECH-hHccCCCCC-----CEEECCCCc-------cC--EeChhhhhCCccCCEEECCCCcCCc
Confidence 45677888887655544321 233344444 889999998 66 55 6789999999999999999999
Q ss_pred cCcc-cccCCCCcEEeccccccccccchhhhccccccccc---cccc--cccCCCCCccccccceeecccccccC--ccc
Q 037627 605 IPSC-IAKLQRLQTLDISGNMAFMELPREICELKELRHLI---GNFT--GTLNIENLSNLQTLKYVERGSWAEIN--PEK 676 (858)
Q Consensus 605 lp~~-l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~---~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~ 676 (858)
+|.. |.++++|++|+|++|.+....|..|..+++|++|+ +.+. .+..+..+++|+.|++++|....... +..
T Consensus 95 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 174 (477)
T 2id5_A 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174 (477)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTT
T ss_pred cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcc
Confidence 9865 68999999999999977777788899999999993 3333 23478899999999999998655442 668
Q ss_pred ccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccE
Q 037627 677 LVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLEC 755 (858)
Q Consensus 677 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~ 755 (858)
+++|+.|++.+|......+ ..+..+++|+.|++++|..... .........+|+.|++++| +..+|...+..+++|+.
T Consensus 175 l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 252 (477)
T 2id5_A 175 LHGLIVLRLRHLNINAIRD-YSFKRLYRLKVLEISHWPYLDT-MTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRF 252 (477)
T ss_dssp CTTCCEEEEESCCCCEECT-TCSCSCTTCCEEEEECCTTCCE-ECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCE
T ss_pred cCCCcEEeCCCCcCcEeCh-hhcccCcccceeeCCCCccccc-cCcccccCccccEEECcCCcccccCHHHhcCccccCe
Confidence 8999999999998777666 7899999999999998754332 2233334559999999996 78888765555899999
Q ss_pred EEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECCCCccccceeeecCCCCCCeEEEc-cCccccccceeeccc
Q 037627 756 LSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLNDLAQWQVE-DGAMPILRGLRVTNA 834 (858)
Q Consensus 756 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c 834 (858)
|+|++|.+++..+..+.++++|+.|+|++|.+.+.. +.....+++|+.|+++++ .++.++.. ...+++|+.|++++|
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE-PYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp EECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEEC-TTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSS
T ss_pred eECCCCcCCccChhhccccccCCEEECCCCccceEC-HHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCC
Confidence 999999999888888999999999999999987531 223356789999999985 57666543 467899999999988
Q ss_pred c
Q 037627 835 Y 835 (858)
Q Consensus 835 ~ 835 (858)
+
T Consensus 331 ~ 331 (477)
T 2id5_A 331 P 331 (477)
T ss_dssp C
T ss_pred C
Confidence 6
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=2.2e-23 Score=246.86 Aligned_cols=282 Identities=15% Similarity=0.167 Sum_probs=185.1
Q ss_pred eeeeccCCccccccccCCCCCccccccCCc-------ccceEeccCCcccccCc--ccccCCCCcEEeccccccccccch
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLV-------NLKYLRLTNAHIDVIPS--CIAKLQRLQTLDISGNMAFMELPR 631 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~-------~L~~L~L~~n~i~~lp~--~l~~l~~L~~L~L~~n~~~~~lp~ 631 (858)
++|+|++|.. +....+|..+++++ +|++|+|++|.++.+|. .+.++++|++|+|++|.+. .+|
T Consensus 518 ~~L~Ls~N~~------lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp- 589 (876)
T 4ecn_A 518 QSLNIACNRG------ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE- 589 (876)
T ss_dssp CEEECTTCTT------SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-
T ss_pred CEEECcCCCC------cccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-
Confidence 8899999861 33113777666665 99999999999999999 8999999999999999554 889
Q ss_pred hhhccccccccc---cccc-cccCCCCCcc-ccccceeecccccccC-cccc--cCCCeeEEeecccccccch--hhhh-
Q 037627 632 EICELKELRHLI---GNFT-GTLNIENLSN-LQTLKYVERGSWAEIN-PEKL--VNLRDLRIISKYQEEEFSF--KSIA- 700 (858)
Q Consensus 632 ~~~~l~~L~~L~---~~~~-~~~~~~~l~~-L~~L~l~~~~~~~~~~-~~~l--~~L~~L~l~~~~~~~~~~~--~~l~- 700 (858)
.++.+++|+.|+ |.+. .+..+..+++ |+.|++++|.....+. +..+ ++|+.|++++|......+. ..+.
T Consensus 590 ~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~ 669 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669 (876)
T ss_dssp CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhcc
Confidence 899999999993 3333 3446888999 9999999998653332 2222 3477888888775443320 1122
Q ss_pred -cCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhcc-------CCccEEEEecccCCCCCcccc
Q 037627 701 -YLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVL-------PNLECLSLKKSHLKEDPMPKL 771 (858)
Q Consensus 701 -~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l-------~~L~~L~L~~n~l~~~~~~~l 771 (858)
.+++|+.|++++|.+..++ ...+..+++|+.|+|++| +..+|.+++... ++|+.|+|++|+++ .+|..+
T Consensus 670 ~~~~~L~~L~Ls~N~L~~lp-~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l 747 (876)
T 4ecn_A 670 YKGINASTVTLSYNEIQKFP-TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDF 747 (876)
T ss_dssp CCCCCEEEEECCSSCCCSCC-HHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGG
T ss_pred ccCCCcCEEEccCCcCCccC-HHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHh
Confidence 2346777777777655331 111235667777777774 556666655421 26777777777776 455555
Q ss_pred C--CCCCCCeeEeeccccCCceEEECCCCccccceeeecCC------CCCCeEEEccCccccccceeecccccCC-CCcc
Q 037627 772 E--KLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDL------NDLAQWQVEDGAMPILRGLRVTNAYKLK-IPER 842 (858)
Q Consensus 772 ~--~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~------~~l~~~~~~~~~l~~L~~L~l~~c~~L~-lp~~ 842 (858)
. .+++|+.|+|++|.+++ ++.....+++|+.|+++++ .-...+|.....+++|+.|++++|. +. +|..
T Consensus 748 ~~~~l~~L~~L~Ls~N~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~ 824 (876)
T 4ecn_A 748 RATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEK 824 (876)
T ss_dssp STTTCTTCCEEECCSSCCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC
T ss_pred hhccCCCcCEEEeCCCCCCc--cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHh
Confidence 5 77777777777777765 3333446677777777652 2223344445567777777777774 46 7665
Q ss_pred cCCCCCCceecCCCC
Q 037627 843 LKSIPLPTEWECDEN 857 (858)
Q Consensus 843 l~~L~~L~~~~c~~N 857 (858)
+. +.|+.++.+.|
T Consensus 825 l~--~~L~~LdLs~N 837 (876)
T 4ecn_A 825 LT--PQLYILDIADN 837 (876)
T ss_dssp CC--SSSCEEECCSC
T ss_pred hc--CCCCEEECCCC
Confidence 43 24444444443
No 19
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=3.1e-22 Score=223.09 Aligned_cols=288 Identities=17% Similarity=0.150 Sum_probs=209.6
Q ss_pred CCeeEEEEEecccCCCCCCCCCCCCccccccCCeeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCc
Q 037627 528 SSCRRQAVHFRIMGDWGLGHCNPRSSSLLLFNQRVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPS 607 (858)
Q Consensus 528 ~~~r~l~~~~~~~~~~~~~~~~~~lr~l~~~~~r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~ 607 (858)
...+++.+..+.....+ .+..+..| ++|++++|. +. .+| ++.+++|++|++++|.++.+|
T Consensus 42 ~~L~~L~Ls~n~l~~~~---~l~~l~~L-----~~L~Ls~n~-------l~--~~~--~~~l~~L~~L~Ls~N~l~~~~- 101 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT---GIEKLTGL-----TKLICTSNN-------IT--TLD--LSQNTNLTYLACDSNKLTNLD- 101 (457)
T ss_dssp TTCCEEECCSSCCCCCT---TGGGCTTC-----SEEECCSSC-------CS--CCC--CTTCTTCSEEECCSSCCSCCC-
T ss_pred CCCCEEEccCCCcccCh---hhcccCCC-----CEEEccCCc-------CC--eEc--cccCCCCCEEECcCCCCceee-
Confidence 45667777655444433 22333333 888999998 77 665 889999999999999999886
Q ss_pred ccccCCCCcEEeccccccccccchhhhccccccccc---cccccccCCCCCccccccceeecccccccCcccccCCCeeE
Q 037627 608 CIAKLQRLQTLDISGNMAFMELPREICELKELRHLI---GNFTGTLNIENLSNLQTLKYVERGSWAEINPEKLVNLRDLR 684 (858)
Q Consensus 608 ~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~---~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~ 684 (858)
+.++++|++|++++|.+ ..+| ++.+++|++|+ +.+.+. .++.+++|+.|++++|.......+..+++|+.|+
T Consensus 102 -~~~l~~L~~L~L~~N~l-~~l~--~~~l~~L~~L~l~~N~l~~l-~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 176 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNKL-TKLD--VSQNPLLTYLNCARNTLTEI-DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLD 176 (457)
T ss_dssp -CTTCTTCCEEECCSSCC-SCCC--CTTCTTCCEEECTTSCCSCC-CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEE
T ss_pred -cCCCCcCCEEECCCCcC-Ceec--CCCCCcCCEEECCCCcccee-ccccCCcCCEEECCCCCcccccccccCCcCCEEE
Confidence 88999999999999954 4455 88889999983 444443 5888999999999998655444677889999999
Q ss_pred EeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccC
Q 037627 685 IISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHL 763 (858)
Q Consensus 685 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l 763 (858)
+++|..... + +..+++|+.|++++|.+... .+..+++|+.|++++| +..+| +.. +++|+.|++++|.+
T Consensus 177 ls~n~l~~l-~---l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N~l~~ip--~~~-l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 177 CSFNKITEL-D---VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLTEID--VTP-LTQLTYFDCSVNPL 245 (457)
T ss_dssp CCSSCCCCC-C---CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSCCC--CTT-CTTCSEEECCSSCC
T ss_pred CCCCcccee-c---cccCCCCCEEECcCCcCCee----ccccCCCCCEEECcCCcccccC--ccc-cCCCCEEEeeCCcC
Confidence 999876552 2 67888999999998877654 3778899999999986 66777 444 69999999999999
Q ss_pred CCCCccccCCCC-------CCCeeEeeccccCCceEEECCCCccccceeeecCCCCCCeEEEc--------cCccccccc
Q 037627 764 KEDPMPKLEKLP-------NLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLNDLAQWQVE--------DGAMPILRG 828 (858)
Q Consensus 764 ~~~~~~~l~~l~-------~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--------~~~l~~L~~ 828 (858)
++.++..+.++. +|+.|++++|.+.+. .....+++|+.|++++|..+..++.. ...+++|+.
T Consensus 246 ~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~---~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~ 322 (457)
T 3bz5_A 246 TELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIY---FQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVY 322 (457)
T ss_dssp SCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE---EECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred CCcCHHHCCCCCEEeccCCCCCEEECCCCccCCc---ccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCE
Confidence 876654444333 444555555554432 23457899999999998877776642 233456666
Q ss_pred eeecccccCC-CCcccCCCCCCceecCCCC
Q 037627 829 LRVTNAYKLK-IPERLKSIPLPTEWECDEN 857 (858)
Q Consensus 829 L~l~~c~~L~-lp~~l~~L~~L~~~~c~~N 857 (858)
|++++| +++ +| +..++.|+.+++++|
T Consensus 323 L~L~~N-~l~~l~--l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 323 LYLNNT-ELTELD--VSHNTKLKSLSCVNA 349 (457)
T ss_dssp EECTTC-CCSCCC--CTTCTTCSEEECCSS
T ss_pred EECCCC-cccccc--cccCCcCcEEECCCC
Confidence 666666 455 54 777788888887776
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=1.7e-22 Score=233.11 Aligned_cols=304 Identities=16% Similarity=0.162 Sum_probs=200.5
Q ss_pred CCCeeEEEEEecccCCCCCCCCCCCCccccccCCeeeeccCCccccccccCCCCCc-cccccCCcccceEeccCCccccc
Q 037627 527 SSSCRRQAVHFRIMGDWGLGHCNPRSSSLLLFNQRVLNFEGVVSNVLCSVGGCYNL-PEEMVKLVNLKYLRLTNAHIDVI 605 (858)
Q Consensus 527 ~~~~r~l~~~~~~~~~~~~~~~~~~lr~l~~~~~r~L~L~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~L~~n~i~~l 605 (858)
+...+++.+..+.....+. ..+.++..| ++|+|++|. +. .+ |..|.++++|++|+|++|.++.+
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~-~~~~~l~~L-----~~L~Ls~N~-------l~--~~~~~~~~~l~~L~~L~Ls~N~l~~l 115 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRM-PDISFLSEL-----RVLRLSHNR-------IR--SLDFHVFLFNQDLEYLDVSHNRLQNI 115 (562)
T ss_dssp CTTCCEEECCSSCCCCCCG-GGTTTCTTC-----CEEECCSCC-------CC--EECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred CCCcCEEECCCCCccccCh-hhhccCCCc-----cEEECCCCC-------CC--cCCHHHhCCCCCCCEEECCCCcCCcc
Confidence 4567777777555544431 123334444 888888888 66 55 56788899999999999999888
Q ss_pred CcccccCCCCcEEecccccccc-ccchhhhccccccccc---cccccccCCCCCccc--cccceeeccc--cccc--Ccc
Q 037627 606 PSCIAKLQRLQTLDISGNMAFM-ELPREICELKELRHLI---GNFTGTLNIENLSNL--QTLKYVERGS--WAEI--NPE 675 (858)
Q Consensus 606 p~~l~~l~~L~~L~L~~n~~~~-~lp~~~~~l~~L~~L~---~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~--~~~ 675 (858)
|.. .+++|++|++++|.+.+ .+|..|+++++|++|+ +.+.. ..+..+++| +.|++++|.. .... .+.
T Consensus 116 p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~ 192 (562)
T 3a79_B 116 SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LDLLPVAHLHLSCILLDLVSYHIKGGETESLQ 192 (562)
T ss_dssp CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEE
T ss_pred Ccc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-CchhhhhhceeeEEEeecccccccccCccccc
Confidence 876 78899999999985444 3457888888888883 23322 344455555 7777776654 1110 000
Q ss_pred --------------------------cc----------------------------------------------------
Q 037627 676 --------------------------KL---------------------------------------------------- 677 (858)
Q Consensus 676 --------------------------~l---------------------------------------------------- 677 (858)
.+
T Consensus 193 ~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~ 272 (562)
T 3a79_B 193 IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF 272 (562)
T ss_dssp ECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH
T ss_pred ccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh
Confidence 01
Q ss_pred ---cCCCeeEEeecccccccchhhh-----------------------------------------------------hc
Q 037627 678 ---VNLRDLRIISKYQEEEFSFKSI-----------------------------------------------------AY 701 (858)
Q Consensus 678 ---~~L~~L~l~~~~~~~~~~~~~l-----------------------------------------------------~~ 701 (858)
++|+.|++.+|.....++ ..+ ..
T Consensus 273 ~~~~~L~~L~l~~n~l~~~ip-~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 351 (562)
T 3a79_B 273 FWPRPVEYLNIYNLTITERID-REEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPS 351 (562)
T ss_dssp HTTSSEEEEEEEEEEECSCCC-CCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSS
T ss_pred hhcccccEEEEeccEeecccc-chhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccC
Confidence 144455555554332222 111 45
Q ss_pred CCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCCh---hhhhccCCccEEEEecccCCC-CCccccCCCCC
Q 037627 702 LKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPE---DLHEVLPNLECLSLKKSHLKE-DPMPKLEKLPN 776 (858)
Q Consensus 702 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~---~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~ 776 (858)
+++|+.|++++|..... ....+..+++|+.|++++| +..++. .+.. +++|+.|+|++|.+++ .++..+..+++
T Consensus 352 l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDS-VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN-MSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp CCCCCEEECCSSCCCTT-TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT-CTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred CCCceEEECCCCccccc-hhhhhcccCCCCEEECCCCCcCCcccchhhhcC-CCCCCEEECCCCcCCCccChhhhcCccc
Confidence 56677777776655542 3445667778888888875 454442 3334 6888888888888776 44445777888
Q ss_pred CCeeEeeccccCCceEEECCCCc-cccceeeecCCCCCCeEEEccCccccccceeecccccCC-CCcc-cCCCCCCceec
Q 037627 777 LTILDLGLKSYGGKKMICTTKGF-HLLEILQLIDLNDLAQWQVEDGAMPILRGLRVTNAYKLK-IPER-LKSIPLPTEWE 853 (858)
Q Consensus 777 L~~L~L~~n~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~L~-lp~~-l~~L~~L~~~~ 853 (858)
|+.|+|++|.+++.. +..+ ++|+.|+++++ .++.++.....+++|+.|++++| .++ +|.. +..++.|+.++
T Consensus 430 L~~L~l~~n~l~~~~----~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~ 503 (562)
T 3a79_B 430 ILVLNLSSNMLTGSV----FRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIW 503 (562)
T ss_dssp CCEEECCSSCCCGGG----GSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEE
T ss_pred CCEEECCCCCCCcch----hhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEE
Confidence 888888888776432 1233 68999999985 67777766678899999999998 577 8887 88888888888
Q ss_pred CCCC
Q 037627 854 CDEN 857 (858)
Q Consensus 854 c~~N 857 (858)
.+.|
T Consensus 504 l~~N 507 (562)
T 3a79_B 504 LHDN 507 (562)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 7776
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=7.4e-23 Score=237.39 Aligned_cols=269 Identities=14% Similarity=0.111 Sum_probs=184.1
Q ss_pred eeeeccCCccccccccCCCCCcc-ccccCCcccceEeccCCcccccCc-ccccCCCCcEEeccccccccccchh-hhccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLP-EEMVKLVNLKYLRLTNAHIDVIPS-CIAKLQRLQTLDISGNMAFMELPRE-ICELK 637 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~n~~~~~lp~~-~~~l~ 637 (858)
++|+|++|. +. .+| ..|+.+++|++|+|++|.++.+|+ .|+++++|++|+|++|. +..+|.. |+.++
T Consensus 78 ~~L~L~~n~-------l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~ 147 (597)
T 3oja_B 78 ELLNLNDLQ-------IE--EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTP 147 (597)
T ss_dssp SEEECTTSC-------CC--EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred cEEECCCCC-------CC--CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCC
Confidence 666777666 54 444 366777777777777777776644 35677777777777773 3344443 46677
Q ss_pred cccccc---cccccc--cCCCCCccccccceeecccccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeec
Q 037627 638 ELRHLI---GNFTGT--LNIENLSNLQTLKYVERGSWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRL 712 (858)
Q Consensus 638 ~L~~L~---~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 712 (858)
+|++|+ |.+... ..++.+++|+.|++++|..... ++..+++|+.|++.+|... .+...++|+.|++++
T Consensus 148 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~L~~L~l~~n~l~------~l~~~~~L~~L~ls~ 220 (597)
T 3oja_B 148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNLLS------TLAIPIAVEELDASH 220 (597)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-CGGGCTTCSEEECCSSCCS------EEECCTTCSEEECCS
T ss_pred CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-ChhhhhhhhhhhcccCccc------cccCCchhheeeccC
Confidence 777772 333322 2466677777777777665443 3556677777777666432 223345677888877
Q ss_pred cCCccccCCCCCCCCCCccEEEecccCCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceE
Q 037627 713 SDDTCFDSLQPLSDCSYLIDLRLSGKIEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKM 792 (858)
Q Consensus 713 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~ 792 (858)
|.+..++. ..+++|+.|++++|--.-+.++.. +++|+.|+|++|.+++.+|..++.+++|+.|+|++|.+++ +
T Consensus 221 n~l~~~~~----~~~~~L~~L~L~~n~l~~~~~l~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--l 293 (597)
T 3oja_B 221 NSINVVRG----PVNVELTILKLQHNNLTDTAWLLN-YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--L 293 (597)
T ss_dssp SCCCEEEC----SCCSCCCEEECCSSCCCCCGGGGG-CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE--E
T ss_pred Cccccccc----ccCCCCCEEECCCCCCCCChhhcc-CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC--C
Confidence 76654421 123689999999973333566666 7999999999999998888999999999999999999876 3
Q ss_pred EECCCCccccceeeecCCCCCCeEEEccCccccccceeecccccCC-CCcccCCCCCCceecCCCC
Q 037627 793 ICTTKGFHLLEILQLIDLNDLAQWQVEDGAMPILRGLRVTNAYKLK-IPERLKSIPLPTEWECDEN 857 (858)
Q Consensus 793 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~L~-lp~~l~~L~~L~~~~c~~N 857 (858)
+.....+++|+.|++++| .+..++.....+++|+.|++++|+ +. +| +..++.|..++.+.|
T Consensus 294 ~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 294 NLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHN 355 (597)
T ss_dssp ECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSS
T ss_pred CcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCC
Confidence 445567899999999985 466666666788999999999995 55 65 444555555555554
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=1.4e-23 Score=235.97 Aligned_cols=126 Identities=20% Similarity=0.196 Sum_probs=89.6
Q ss_pred CCccEEEeccc-CCC-CChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECCCCcccccee
Q 037627 728 SYLIDLRLSGK-IEK-LPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEIL 805 (858)
Q Consensus 728 ~~L~~L~l~~~-~~~-~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L 805 (858)
++|+.|++++| +.. .|..+.. +++|+.|+|++|.+++..+..+.++++|+.|+|++|.+.+.. +.....+++|+.|
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L 352 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSH-FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID-SRMFENLDKLEVL 352 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-GGGGTTCTTCCEE
T ss_pred cCceEEEecCccccccchhhccc-CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC-hhHhcCcccCCEE
Confidence 57888888875 444 3444444 688888888888888777778888888888888888875421 1233567888888
Q ss_pred eecCCCCCCeE-EEccCccccccceeecccccCC-CCc-ccCCCCCCceecCCCC
Q 037627 806 QLIDLNDLAQW-QVEDGAMPILRGLRVTNAYKLK-IPE-RLKSIPLPTEWECDEN 857 (858)
Q Consensus 806 ~l~~~~~l~~~-~~~~~~l~~L~~L~l~~c~~L~-lp~-~l~~L~~L~~~~c~~N 857 (858)
++++| .+..+ +.....+++|+.|++++| .++ +|. .+..++.|+.++.+.|
T Consensus 353 ~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 353 DLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp ECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCC-cccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCC
Confidence 88875 45554 334567888888888888 466 655 4567777777776665
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=3.7e-22 Score=224.51 Aligned_cols=254 Identities=19% Similarity=0.219 Sum_probs=186.7
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCc--------------------ccccCCCCcEEec
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPS--------------------CIAKLQRLQTLDI 620 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~--------------------~l~~l~~L~~L~L 620 (858)
++|++++|. +. .+|. +.++++|++|++++|.+..+|. .+.++++|++|++
T Consensus 115 ~~L~L~~n~-------l~--~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l 184 (466)
T 1o6v_A 115 TGLTLFNNQ-------IT--DIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI 184 (466)
T ss_dssp CEEECCSSC-------CC--CCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEEC
T ss_pred CEEECCCCC-------CC--CChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEEC
Confidence 888888887 66 6654 8888899999998888776652 2445566666666
Q ss_pred cccccccccchhhhccccccccc---cccccccCCCCCccccccceeecccccccCcccccCCCeeEEeecccccccchh
Q 037627 621 SGNMAFMELPREICELKELRHLI---GNFTGTLNIENLSNLQTLKYVERGSWAEINPEKLVNLRDLRIISKYQEEEFSFK 697 (858)
Q Consensus 621 ~~n~~~~~lp~~~~~l~~L~~L~---~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 697 (858)
++|. +..++ .+..+++|++|+ +.+.....++.+++|+.|++++|.......+..+++|+.|++.+|......
T Consensus 185 ~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~--- 259 (466)
T 1o6v_A 185 SSNK-VSDIS-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA--- 259 (466)
T ss_dssp CSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG---
T ss_pred cCCc-CCCCh-hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccch---
Confidence 6663 33333 366666777662 333333346667778888877777665556667788888888887654432
Q ss_pred hhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCC
Q 037627 698 SIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPN 776 (858)
Q Consensus 698 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 776 (858)
.+..+++|+.|++++|..... +.+..+++|+.|++++| +..++. +.. +++|+.|+|++|.+++..+ +..+++
T Consensus 260 ~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~~~-~~~-l~~L~~L~L~~n~l~~~~~--~~~l~~ 332 (466)
T 1o6v_A 260 PLSGLTKLTELKLGANQISNI---SPLAGLTALTNLELNENQLEDISP-ISN-LKNLTYLTLYFNNISDISP--VSSLTK 332 (466)
T ss_dssp GGTTCTTCSEEECCSSCCCCC---GGGTTCTTCSEEECCSSCCSCCGG-GGG-CTTCSEEECCSSCCSCCGG--GGGCTT
T ss_pred hhhcCCCCCEEECCCCccCcc---ccccCCCccCeEEcCCCcccCchh-hcC-CCCCCEEECcCCcCCCchh--hccCcc
Confidence 277888899999988876644 33778999999999996 666655 555 7999999999999987654 789999
Q ss_pred CCeeEeeccccCCceEEECCCCccccceeeecCCCCCCeEEEccCccccccceeecccccCCCCc
Q 037627 777 LTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLNDLAQWQVEDGAMPILRGLRVTNAYKLKIPE 841 (858)
Q Consensus 777 L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~L~lp~ 841 (858)
|+.|++++|.+++. .....+++|+.|++++|. +..++. ...+++|+.|++++|+-..+|.
T Consensus 333 L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~~~~~p~ 392 (466)
T 1o6v_A 333 LQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQAWTNAPV 392 (466)
T ss_dssp CCEEECCSSCCCCC---GGGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCEEEECCCB
T ss_pred CCEeECCCCccCCc---hhhccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCCcccCCch
Confidence 99999999999874 245678999999999865 554432 6789999999999995322544
No 24
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=3.5e-22 Score=215.87 Aligned_cols=269 Identities=19% Similarity=0.231 Sum_probs=217.4
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhcccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELR 640 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~ 640 (858)
+.|+++++. +. .+| .+..+++|++|++++|.++.+|. +.++++|++|++++| .+..+| .+..+++|+
T Consensus 47 ~~L~l~~~~-------i~--~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~ 113 (347)
T 4fmz_A 47 TKLVVAGEK-------VA--SIQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLR 113 (347)
T ss_dssp SEEECCSSC-------CC--CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCS
T ss_pred cEEEEeCCc-------cc--cch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcCC
Confidence 788999988 76 676 48899999999999999999987 999999999999999 555565 589999999
Q ss_pred ccc---cccccccCCCCCccccccceeecc-cccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCc
Q 037627 641 HLI---GNFTGTLNIENLSNLQTLKYVERG-SWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDT 716 (858)
Q Consensus 641 ~L~---~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 716 (858)
+|+ +.+.....+..+++|+.|++++|. ......+..+++|+.|++.+|...... .+..+++|+.|++++|...
T Consensus 114 ~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 114 ELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT---PIANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp EEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECTTSCCC
T ss_pred EEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCch---hhccCCCCCEEEccCCccc
Confidence 993 444555568899999999999995 444455778999999999998755432 3789999999999998776
Q ss_pred cccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEEC
Q 037627 717 CFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICT 795 (858)
Q Consensus 717 ~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~ 795 (858)
.. +.+..+++|+.|+++++ +..++. +.. +++|+.|+|++|.++...+ +..+++|+.|++++|.+++. ..
T Consensus 191 ~~---~~~~~l~~L~~L~l~~n~l~~~~~-~~~-~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~---~~ 260 (347)
T 4fmz_A 191 DI---SPLASLTSLHYFTAYVNQITDITP-VAN-MTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI---NA 260 (347)
T ss_dssp CC---GGGGGCTTCCEEECCSSCCCCCGG-GGG-CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC---GG
T ss_pred cc---ccccCCCccceeecccCCCCCCch-hhc-CCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC---hh
Confidence 44 34778899999999996 555554 444 7999999999999976544 89999999999999998764 23
Q ss_pred CCCccccceeeecCCCCCCeEEEccCccccccceeecccccCC-CCcccCCCCCCceecCCCC
Q 037627 796 TKGFHLLEILQLIDLNDLAQWQVEDGAMPILRGLRVTNAYKLK-IPERLKSIPLPTEWECDEN 857 (858)
Q Consensus 796 ~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~L~-lp~~l~~L~~L~~~~c~~N 857 (858)
...+++|+.|++++| .+..++ ....+++|+.|++++|+... .|..+..++.|+.++++.|
T Consensus 261 ~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp GTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred HhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence 567899999999986 466653 35678999999999995433 6667777777777777665
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=1.8e-22 Score=235.75 Aligned_cols=284 Identities=19% Similarity=0.176 Sum_probs=177.2
Q ss_pred eeeeccCCccccccccCCCCCccc-cccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPE-EMVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKEL 639 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L 639 (858)
+.|++++|. +. .++. .|+.+++|++|++++|.++.+|..+.++++|++|++++|.+....|..+..+++|
T Consensus 257 ~~L~l~~n~-------l~--~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 327 (606)
T 3t6q_A 257 ESINLQKHY-------FF--NISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327 (606)
T ss_dssp EEEECTTCC-------CS--SCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTC
T ss_pred eEEEeecCc-------cC--ccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcC
Confidence 677777776 55 4443 3777777777777777777777777777777777777775555556667777777
Q ss_pred cccc---ccccc---ccCCCCCccccccceeeccccccc----CcccccCCCeeEEeecccccccchhhhhcCCCCCeEE
Q 037627 640 RHLI---GNFTG---TLNIENLSNLQTLKYVERGSWAEI----NPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLS 709 (858)
Q Consensus 640 ~~L~---~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 709 (858)
++|+ +...+ ...+..+++|++|++++|...... .+..+++|+.|++.+|......+ ..+..+++|+.|+
T Consensus 328 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT-EAFKECPQLELLD 406 (606)
T ss_dssp SEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT-TTTTTCTTCSEEE
T ss_pred CEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH-HHhcCCccCCeEE
Confidence 7773 22221 123667777777777777644332 35567777777777776655555 6677777777777
Q ss_pred eeccCCccccCCCCCCCCCCccEEEeccc-CCCC-ChhhhhccCCccEEEEecccCCCC---CccccCCCCCCCeeEeec
Q 037627 710 IRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKL-PEDLHEVLPNLECLSLKKSHLKED---PMPKLEKLPNLTILDLGL 784 (858)
Q Consensus 710 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~-p~~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~L~~ 784 (858)
+++|..........+..+++|+.|++++| +... |..+.. +++|+.|+|++|.+++. .+..+..+++|+.|+|++
T Consensus 407 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~ 485 (606)
T 3t6q_A 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG-LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485 (606)
T ss_dssp CTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT-CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTT
T ss_pred CCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC-CCCCCEEECCCCCCCccccccchhhccCCCccEEECCC
Confidence 77776554422333666777777777775 3333 333444 57777777777776542 224567777777777777
Q ss_pred cccCCceEEECCCCccccceeeecCCCCCCeEEEccCccccccceeecccccCC-CCcccCCCCCCceecCCCC
Q 037627 785 KSYGGKKMICTTKGFHLLEILQLIDLNDLAQWQVEDGAMPILRGLRVTNAYKLK-IPERLKSIPLPTEWECDEN 857 (858)
Q Consensus 785 n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~L~-lp~~l~~L~~L~~~~c~~N 857 (858)
|.+++.. +.....+++|+.|+++++.-....+.....+++| .|++++|.... .|..+..++.|+.++.+.|
T Consensus 486 n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 486 CDLSSID-QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp SCCCEEC-TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTC
T ss_pred CccCccC-hhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCC
Confidence 7765421 1223456777777777653222223334556666 77777773222 4444555555555555544
No 26
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=4e-22 Score=231.12 Aligned_cols=157 Identities=15% Similarity=0.153 Sum_probs=114.5
Q ss_pred hhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCC-ChhhhhccCCccEEEEecccCCCCCccccCCC
Q 037627 697 KSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKL-PEDLHEVLPNLECLSLKKSHLKEDPMPKLEKL 774 (858)
Q Consensus 697 ~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~-p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 774 (858)
..+..+++|+.|++++|.....+ +.+..+++|+.|++++| +... |...+..+++|+.|+|++|.+.+..+..+.++
T Consensus 367 ~~~~~~~~L~~L~l~~n~l~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 444 (570)
T 2z63_A 367 QSDFGTTSLKYLDLSFNGVITMS--SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444 (570)
T ss_dssp HHHHTCSCCCEEECCSCSEEEEE--EEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred ccccccCccCEEECCCCcccccc--ccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcC
Confidence 34445555555555555443321 12667788888888885 4433 32333337999999999999988888899999
Q ss_pred CCCCeeEeeccccCCceEEECCCCccccceeeecCCCCCCeE-EEccCccccccceeecccccCC-C-CcccCCCCCCce
Q 037627 775 PNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLNDLAQW-QVEDGAMPILRGLRVTNAYKLK-I-PERLKSIPLPTE 851 (858)
Q Consensus 775 ~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~c~~L~-l-p~~l~~L~~L~~ 851 (858)
++|+.|+|++|.+.+..++.....+++|+.|++++|. +..+ +.....+++|+.|++++| .++ + |..+..++.|+.
T Consensus 445 ~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 522 (570)
T 2z63_A 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQK 522 (570)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCE
T ss_pred CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcE
Confidence 9999999999998754455556788999999999864 5555 445667899999999999 566 4 456788888888
Q ss_pred ecCCCC
Q 037627 852 WECDEN 857 (858)
Q Consensus 852 ~~c~~N 857 (858)
++.++|
T Consensus 523 L~l~~N 528 (570)
T 2z63_A 523 IWLHTN 528 (570)
T ss_dssp EECCSS
T ss_pred EEecCC
Confidence 887766
No 27
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=1.3e-21 Score=218.17 Aligned_cols=257 Identities=18% Similarity=0.164 Sum_probs=206.0
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhcccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELR 640 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~ 640 (858)
++|++++|. +. .+| .++.+++|++|++++|.++.+| ++.+++|++|++++|.+ ..+| ++.+++|+
T Consensus 45 ~~L~Ls~n~-------l~--~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l-~~~~--~~~l~~L~ 109 (457)
T 3bz5_A 45 TSLDCHNSS-------IT--DMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKL-TNLD--VTPLTKLT 109 (457)
T ss_dssp CEEECCSSC-------CC--CCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCC-SCCC--CTTCTTCC
T ss_pred CEEEccCCC-------cc--cCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCC-ceee--cCCCCcCC
Confidence 889999998 77 776 7999999999999999999986 89999999999999954 4455 88999999
Q ss_pred ccc---cccccccCCCCCccccccceeecccccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCcc
Q 037627 641 HLI---GNFTGTLNIENLSNLQTLKYVERGSWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTC 717 (858)
Q Consensus 641 ~L~---~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 717 (858)
+|+ +.+... .++.+++|+.|++++|..... ++..+++|+.|++.+|.....+ .+..+++|+.|++++|.+..
T Consensus 110 ~L~L~~N~l~~l-~~~~l~~L~~L~l~~N~l~~l-~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 110 YLNCDTNKLTKL-DVSQNPLLTYLNCARNTLTEI-DVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp EEECCSSCCSCC-CCTTCTTCCEEECTTSCCSCC-CCTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCC
T ss_pred EEECCCCcCCee-cCCCCCcCCEEECCCCcccee-ccccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccce
Confidence 993 444443 589999999999999987665 4788999999999998654443 36788999999999998775
Q ss_pred ccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECC
Q 037627 718 FDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTT 796 (858)
Q Consensus 718 ~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 796 (858)
+ + +..+++|+.|++++| +..++ +.. +++|+.|+|++|++++. | ++.+++|+.|++++|.+++.. .
T Consensus 185 l---~-l~~l~~L~~L~l~~N~l~~~~--l~~-l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~----~ 250 (457)
T 3bz5_A 185 L---D-VSQNKLLNRLNCDTNNITKLD--LNQ-NIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELD----V 250 (457)
T ss_dssp C---C-CTTCTTCCEEECCSSCCSCCC--CTT-CTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC----C
T ss_pred e---c-cccCCCCCEEECcCCcCCeec--ccc-CCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcC----H
Confidence 4 2 778899999999996 66554 444 79999999999999873 3 889999999999999998742 4
Q ss_pred CCccccc----------eeeecCCCCCCeEEEccCccccccceeecccccCC-CCcccCCCCCCceec
Q 037627 797 KGFHLLE----------ILQLIDLNDLAQWQVEDGAMPILRGLRVTNAYKLK-IPERLKSIPLPTEWE 853 (858)
Q Consensus 797 ~~~~~L~----------~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~L~-lp~~l~~L~~L~~~~ 853 (858)
..+++|+ .|++++|..+..++ .+.+++|+.|++++|+.+. +|.....|+.|.+.+
T Consensus 251 ~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~ 316 (457)
T 3bz5_A 251 STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ 316 (457)
T ss_dssp TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT
T ss_pred HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhh
Confidence 4566655 45555555455554 4678999999999998888 887655555554433
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=3e-22 Score=225.15 Aligned_cols=296 Identities=16% Similarity=0.123 Sum_probs=197.6
Q ss_pred cCCCeeEEEEEecccCCCCCCCCCCCCccccccCCeeeeccCCccccccccCCCCCc-cccccCCcccceEeccCCcccc
Q 037627 526 ISSSCRRQAVHFRIMGDWGLGHCNPRSSSLLLFNQRVLNFEGVVSNVLCSVGGCYNL-PEEMVKLVNLKYLRLTNAHIDV 604 (858)
Q Consensus 526 ~~~~~r~l~~~~~~~~~~~~~~~~~~lr~l~~~~~r~L~L~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~L~~n~i~~ 604 (858)
.+...+++.+..+....... ..+.++..| ++|+|++|. +.. .+ |..|.++++|++|+|++|.++.
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~-~~~~~l~~L-----~~L~L~~n~-------~~~-~i~~~~~~~l~~L~~L~Ls~n~l~~ 93 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNE-TSFSRLQDL-----QFLKVEQQT-------PGL-VIRNNTFRGLSSLIILKLDYNQFLQ 93 (455)
T ss_dssp CCTTCCEEECCSSCCCEECT-TTTSSCTTC-----CEEECCCCS-------TTC-EECTTTTTTCTTCCEEECTTCTTCE
T ss_pred CCCccCEEEecCCccCcCCh-hHhccCccc-----cEEECcCCc-------ccc-eECcccccccccCCEEeCCCCccCc
Confidence 34567777777555443311 123333333 777777776 321 23 4557777778888887777775
Q ss_pred c-CcccccCCCCcEEeccccccccccchh--hhccccccccc---cccccc--cC-CCCCccccccceeecccccccC--
Q 037627 605 I-PSCIAKLQRLQTLDISGNMAFMELPRE--ICELKELRHLI---GNFTGT--LN-IENLSNLQTLKYVERGSWAEIN-- 673 (858)
Q Consensus 605 l-p~~l~~l~~L~~L~L~~n~~~~~lp~~--~~~l~~L~~L~---~~~~~~--~~-~~~l~~L~~L~l~~~~~~~~~~-- 673 (858)
+ |..|.++++|++|++++|.+.+.+|.. +..+++|++|+ +.+... .. +.++++|++|++++|......+
T Consensus 94 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 173 (455)
T 3v47_A 94 LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED 173 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT
T ss_pred cChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh
Confidence 5 666777777888888777555545544 77777777772 333332 12 6677777777777776432211
Q ss_pred cc----------------------------------cccCCCeeEEeecccccccchhhhhc------------------
Q 037627 674 PE----------------------------------KLVNLRDLRIISKYQEEEFSFKSIAY------------------ 701 (858)
Q Consensus 674 ~~----------------------------------~l~~L~~L~l~~~~~~~~~~~~~l~~------------------ 701 (858)
+. .+++|+.|++++|......+ ..+..
T Consensus 174 l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~~~~~~~L~~L~l~~~~~~ 252 (455)
T 3v47_A 174 LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA-KRFFDAIAGTKIQSLILSNSYNM 252 (455)
T ss_dssp SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHH-HHHHHHTTTCCEEEEECTTCTTT
T ss_pred hhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccch-hhhhccccccceeeEeecccccc
Confidence 11 22567777777765443332 22211
Q ss_pred ---------------------CCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCC-ChhhhhccCCccEEEE
Q 037627 702 ---------------------LKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKL-PEDLHEVLPNLECLSL 758 (858)
Q Consensus 702 ---------------------l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~-p~~~~~~l~~L~~L~L 758 (858)
.++|+.|++++|.+... ....+..+++|+.|++++| +..+ |..+.. +++|+.|+|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L 330 (455)
T 3v47_A 253 GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL-LKSVFSHFTDLEQLTLAQNEINKIDDNAFWG-LTHLLKLNL 330 (455)
T ss_dssp SCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEEC
T ss_pred ccccchhhhccCcccccccccccCceEEEecCcccccc-chhhcccCCCCCEEECCCCcccccChhHhcC-cccCCEEEC
Confidence 24677777777766544 3455788999999999996 5555 445555 799999999
Q ss_pred ecccCCCCCccccCCCCCCCeeEeeccccCCceEEECCCCccccceeeecCCCCCCeEEEc-cCccccccceeecccccC
Q 037627 759 KKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLNDLAQWQVE-DGAMPILRGLRVTNAYKL 837 (858)
Q Consensus 759 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~L 837 (858)
++|.+++..+..+.++++|+.|+|++|.+++.. +.....+++|++|+++++ .++.++.. ...+++|+.|++++|+--
T Consensus 331 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG-DQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CSSCCCEECGGGGTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccCCcChhHhcCcccCCEEECCCCcccccC-hhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcc
Confidence 999998888899999999999999999986421 223467899999999984 57776543 367899999999999643
Q ss_pred C-CC
Q 037627 838 K-IP 840 (858)
Q Consensus 838 ~-lp 840 (858)
. .|
T Consensus 409 ~~~~ 412 (455)
T 3v47_A 409 CSCP 412 (455)
T ss_dssp CCTT
T ss_pred cCCC
Confidence 3 44
No 29
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=2.3e-21 Score=207.62 Aligned_cols=277 Identities=17% Similarity=0.162 Sum_probs=197.4
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCc-ccccCCCCcEEeccccccccccchhhhccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPS-CIAKLQRLQTLDISGNMAFMELPREICELKEL 639 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L 639 (858)
++++++++. +. .+|..+. ++|++|++++|.++.+|. .|.++++|++|++++|.+.+..|..+..+++|
T Consensus 34 ~~l~~~~~~-------l~--~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (330)
T 1xku_A 34 RVVQCSDLG-------LE--KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102 (330)
T ss_dssp TEEECTTSC-------CC--SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred eEEEecCCC-------cc--ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCC
Confidence 666777666 55 6666553 577777777777777754 57777777788877775555557777777777
Q ss_pred cccc---cccccccCCCCCccccccceeecccccccC--cccccCCCeeEEeeccccc--ccchhhhhcCCCCCeEEeec
Q 037627 640 RHLI---GNFTGTLNIENLSNLQTLKYVERGSWAEIN--PEKLVNLRDLRIISKYQEE--EFSFKSIAYLKNLQLLSIRL 712 (858)
Q Consensus 640 ~~L~---~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~--~~~~~~l~~l~~L~~L~l~~ 712 (858)
++|+ +.+... ...-.++|++|++++|....... +..+++|+.|++.+|.... ..+ ..+..+++|+.|++++
T Consensus 103 ~~L~Ls~n~l~~l-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 103 ERLYLSKNQLKEL-PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN-GAFQGMKKLSYIRIAD 180 (330)
T ss_dssp CEEECCSSCCSBC-CSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCT-TGGGGCTTCCEEECCS
T ss_pred CEEECCCCcCCcc-ChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcCh-hhccCCCCcCEEECCC
Confidence 7773 222211 11223788899998887654433 5678899999998887543 344 7788999999999998
Q ss_pred cCCccccCCCCCCCCCCccEEEeccc-CCCC-ChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCc
Q 037627 713 SDDTCFDSLQPLSDCSYLIDLRLSGK-IEKL-PEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGK 790 (858)
Q Consensus 713 ~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~-p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~ 790 (858)
|....++. .+ .++|+.|++++| +..+ |..+.. +++|+.|+|++|.+++..+..+..+++|+.|+|++|.++.
T Consensus 181 n~l~~l~~--~~--~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~- 254 (330)
T 1xku_A 181 TNITTIPQ--GL--PPSLTELHLDGNKITKVDAASLKG-LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK- 254 (330)
T ss_dssp SCCCSCCS--SC--CTTCSEEECTTSCCCEECTGGGTT-CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-
T ss_pred CccccCCc--cc--cccCCEEECCCCcCCccCHHHhcC-CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-
Confidence 87765432 11 278999999996 5555 445555 7999999999999988777789999999999999998874
Q ss_pred eEEECCCCccccceeeecCCCCCCeEEEcc-------CccccccceeecccccCC---CCcccCCCCCCceecCCCCC
Q 037627 791 KMICTTKGFHLLEILQLIDLNDLAQWQVED-------GAMPILRGLRVTNAYKLK---IPERLKSIPLPTEWECDENW 858 (858)
Q Consensus 791 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-------~~l~~L~~L~l~~c~~L~---lp~~l~~L~~L~~~~c~~N~ 858 (858)
++.....+++|++|+++++ .++.++... ...++|+.|++++|+... .|..+..+..++.++.++|.
T Consensus 255 -lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 255 -VPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp -CCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred -CChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 3334567889999999975 466554321 124788999999998543 45688889999988888873
No 30
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=6.6e-22 Score=230.94 Aligned_cols=201 Identities=17% Similarity=0.127 Sum_probs=141.5
Q ss_pred CCCCCccccccceeecccccc----cCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCC
Q 037627 651 NIENLSNLQTLKYVERGSWAE----INPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSD 726 (858)
Q Consensus 651 ~~~~l~~L~~L~l~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~ 726 (858)
.+..+++|+.|++++|..... ..+..+++|+.|++.+|.... .+ ..+..+++|+.|++++|..........+..
T Consensus 345 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 422 (606)
T 3vq2_A 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLS 422 (606)
T ss_dssp CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-EC-CCCTTCTTCCEEECTTSEEESTTTTTTTTT
T ss_pred hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-ch-hhccCCCCCCeeECCCCccCCccChhhhhc
Confidence 344566666666666654332 223466777777777776433 44 677888999999999887665533356788
Q ss_pred CCCccEEEeccc-CCC-CChhhhhccCCccEEEEecccCCC-CCccccCCCCCCCeeEeeccccCCceEEECCCCccccc
Q 037627 727 CSYLIDLRLSGK-IEK-LPEDLHEVLPNLECLSLKKSHLKE-DPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLE 803 (858)
Q Consensus 727 l~~L~~L~l~~~-~~~-~p~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~ 803 (858)
+++|+.|++++| +.. .|..+.. +++|+.|+|++|.+++ .+|..++.+++|+.|+|++|.+++.. +.....+++|+
T Consensus 423 l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~ 500 (606)
T 3vq2_A 423 LEKLLYLDISYTNTKIDFDGIFLG-LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS-WGVFDTLHRLQ 500 (606)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTT-CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCC
T ss_pred cccCCEEECcCCCCCccchhhhcC-CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccC-hhhhcccccCC
Confidence 889999999986 333 4555555 6899999999998876 36778888999999999988886421 22345678899
Q ss_pred eeeecCCCCCCeE-EEccCccccccceeecccccCC-CCcccCCCC-CCceecCCCC
Q 037627 804 ILQLIDLNDLAQW-QVEDGAMPILRGLRVTNAYKLK-IPERLKSIP-LPTEWECDEN 857 (858)
Q Consensus 804 ~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~c~~L~-lp~~l~~L~-~L~~~~c~~N 857 (858)
.|++++|. +..+ +.....+++|+.|++++| .++ +|..+..++ .|+.++.+.|
T Consensus 501 ~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 501 LLNMSHNN-LLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp EEECCSSC-CSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSC
T ss_pred EEECCCCc-CCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCC
Confidence 99998864 5544 445667888999999988 477 888777765 4666666554
No 31
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=2.5e-21 Score=206.29 Aligned_cols=226 Identities=22% Similarity=0.289 Sum_probs=132.0
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhcccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELR 640 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~ 640 (858)
+.|+|++|. +. .+|..++++++|++|+|++|.++.+|..+.++++|++|++++|. +..+|..+..
T Consensus 84 ~~L~L~~n~-------l~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~----- 148 (328)
T 4fcg_A 84 VALELRSVP-------LP--QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIAS----- 148 (328)
T ss_dssp CEEEEESSC-------CS--SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGG-----
T ss_pred eEEEccCCC-------ch--hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhc-----
Confidence 677777777 66 77777777888888888888877777777778888888888773 3355654433
Q ss_pred ccccccccccCCCCCccccccceeecccccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccC
Q 037627 641 HLIGNFTGTLNIENLSNLQTLKYVERGSWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDS 720 (858)
Q Consensus 641 ~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 720 (858)
+++|++|++++|+.. ..++ ..+.. .. .
T Consensus 149 --------------l~~L~~L~L~~n~~~----------------------~~~p-~~~~~------~~----------~ 175 (328)
T 4fcg_A 149 --------------LNRLRELSIRACPEL----------------------TELP-EPLAS------TD----------A 175 (328)
T ss_dssp --------------CTTCCEEEEEEETTC----------------------CCCC-SCSEE------EC-----------
T ss_pred --------------CcCCCEEECCCCCCc----------------------cccC-hhHhh------cc----------c
Confidence 334444444444322 2222 11111 00 0
Q ss_pred CCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECCCCc
Q 037627 721 LQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGF 799 (858)
Q Consensus 721 ~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~ 799 (858)
...+..+++|+.|++++| +..+|.++.. +++|+.|+|++|.+++ .|..++.+++|+.|+|++|.+.+. ++.....+
T Consensus 176 ~~~~~~l~~L~~L~L~~n~l~~lp~~l~~-l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~-~p~~~~~l 252 (328)
T 4fcg_A 176 SGEHQGLVNLQSLRLEWTGIRSLPASIAN-LQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRN-YPPIFGGR 252 (328)
T ss_dssp CCCEEESTTCCEEEEEEECCCCCCGGGGG-CTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCB-CCCCTTCC
T ss_pred hhhhccCCCCCEEECcCCCcCcchHhhcC-CCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhh-hHHHhcCC
Confidence 011223444455555443 3445555544 4666666666666653 334566666666666666555442 22233455
Q ss_pred cccceeeecCCCCCCeEEEccCccccccceeecccccCC-CCcccCCCCCCceecCCCC
Q 037627 800 HLLEILQLIDLNDLAQWQVEDGAMPILRGLRVTNAYKLK-IPERLKSIPLPTEWECDEN 857 (858)
Q Consensus 800 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~L~-lp~~l~~L~~L~~~~c~~N 857 (858)
++|+.|++++|+....++...+.+++|+.|++++|+.++ +|..+.+|+.|..+.++.|
T Consensus 253 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 666666666665555555555666777777777776666 7777777777777666544
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=1.1e-21 Score=224.47 Aligned_cols=117 Identities=20% Similarity=0.235 Sum_probs=97.7
Q ss_pred eeeeccCCccccccccCCCCCcc-ccccCCcccceEeccCCccccc-CcccccCCCCcEEeccccccccccchhhhcccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLP-EEMVKLVNLKYLRLTNAHIDVI-PSCIAKLQRLQTLDISGNMAFMELPREICELKE 638 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~ 638 (858)
++|+|++|. +. .++ ..|.++++|++|+|++|.++.+ |..|.++++|++|++++| .+..+|.. .+++
T Consensus 24 ~~L~Ls~n~-------i~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~ 91 (520)
T 2z7x_B 24 TILNISQNY-------IS--ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--PTVN 91 (520)
T ss_dssp SEEECCSSC-------CC--CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--CCCC
T ss_pred cEEECCCCc-------cc--ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--ccCC
Confidence 889999998 76 565 6899999999999999999987 778999999999999999 55578876 8999
Q ss_pred ccccc---ccccc---ccCCCCCccccccceeecccccccCcccccCC--CeeEEeeccc
Q 037627 639 LRHLI---GNFTG---TLNIENLSNLQTLKYVERGSWAEINPEKLVNL--RDLRIISKYQ 690 (858)
Q Consensus 639 L~~L~---~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L--~~L~l~~~~~ 690 (858)
|++|+ +.+.. +..++++++|++|++++|.... ..+..+++| +.|++.+|..
T Consensus 92 L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG-GGGGGGTTSCEEEEEEEECTT
T ss_pred ccEEeccCCccccccchhhhccCCcceEEEecCcccch-hhccccccceeeEEEeecccc
Confidence 99993 44433 3578999999999999998655 346677888 8999988865
No 33
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=1.9e-21 Score=224.20 Aligned_cols=154 Identities=15% Similarity=0.102 Sum_probs=99.1
Q ss_pred hcCCCCCeEEeeccCCcccc--CCCCCCCCCCccEEEeccc-CCCCCh--hhhhccCCccEEEEecccCCCCCccccCCC
Q 037627 700 AYLKNLQLLSIRLSDDTCFD--SLQPLSDCSYLIDLRLSGK-IEKLPE--DLHEVLPNLECLSLKKSHLKEDPMPKLEKL 774 (858)
Q Consensus 700 ~~l~~L~~L~l~~~~~~~~~--~~~~l~~l~~L~~L~l~~~-~~~~p~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 774 (858)
..+++|+.|++++|.+.... ....+..+++|+.|++++| +..+|. .....+++|+.|+|++|+++ ..|..+..+
T Consensus 331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~ 409 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP 409 (549)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCC
T ss_pred hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccc
Confidence 35667777777766554310 1223556777888888875 555442 22233688888888888876 456677777
Q ss_pred CCCCeeEeeccccCCceEE----------------ECCCCccccceeeecCCCCCCeEEEccCccccccceeecccccCC
Q 037627 775 PNLTILDLGLKSYGGKKMI----------------CTTKGFHLLEILQLIDLNDLAQWQVEDGAMPILRGLRVTNAYKLK 838 (858)
Q Consensus 775 ~~L~~L~L~~n~~~~~~~~----------------~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~L~ 838 (858)
++|++|+|++|.++..... .....+++|++|++++| .++.++. ...+++|+.|++++| .++
T Consensus 410 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls~N-~l~ 486 (549)
T 2z81_A 410 EKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKISRN-QLK 486 (549)
T ss_dssp TTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECCSS-CCC
T ss_pred ccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCC-cccCccCCEEecCCC-ccC
Confidence 7777777777776431100 01125677888888774 4666654 346788899999888 466
Q ss_pred --CCcccCCCCCCceecCCCC
Q 037627 839 --IPERLKSIPLPTEWECDEN 857 (858)
Q Consensus 839 --lp~~l~~L~~L~~~~c~~N 857 (858)
.|..+..++.|+.++.+.|
T Consensus 487 ~~~~~~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 487 SVPDGIFDRLTSLQKIWLHTN 507 (549)
T ss_dssp CCCTTGGGGCTTCCEEECCSS
T ss_pred CcCHHHHhcCcccCEEEecCC
Confidence 4456778888888777766
No 34
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=1.4e-21 Score=209.45 Aligned_cols=274 Identities=19% Similarity=0.185 Sum_probs=184.6
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccC-cccccCCCCcEEeccccccccccchhhhccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIP-SCIAKLQRLQTLDISGNMAFMELPREICELKEL 639 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L 639 (858)
++++++++. +. .+|..+. ++|++|++++|.++.+| ..+.++++|++|++++|.+.+..|..+..+++|
T Consensus 36 ~~l~~~~~~-------l~--~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 104 (332)
T 2ft3_A 36 RVVQCSDLG-------LK--AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104 (332)
T ss_dssp TEEECCSSC-------CS--SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred CEEECCCCC-------cc--ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence 666777766 65 6776553 57777777777777664 467777777777777775555556677777777
Q ss_pred cccc---ccccc-ccCCCCCccccccceeecccccccC--cccccCCCeeEEeeccccc--ccchhhhhcCCCCCeEEee
Q 037627 640 RHLI---GNFTG-TLNIENLSNLQTLKYVERGSWAEIN--PEKLVNLRDLRIISKYQEE--EFSFKSIAYLKNLQLLSIR 711 (858)
Q Consensus 640 ~~L~---~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~--~~~~~~l~~l~~L~~L~l~ 711 (858)
++|+ +.+.. +..+ .++|++|++++|....... +..+++|+.|++.+|.... ..+ ..+..+ +|+.|+++
T Consensus 105 ~~L~L~~n~l~~l~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 105 QKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP-GAFDGL-KLNYLRIS 180 (332)
T ss_dssp CEEECCSSCCCSCCSSC--CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCT-TSSCSC-CCSCCBCC
T ss_pred CEEECCCCcCCccCccc--cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCc-ccccCC-ccCEEECc
Confidence 7773 22221 1122 2678888888887554432 5677888888888877542 333 566666 88888888
Q ss_pred ccCCccccCCCCCCCCCCccEEEeccc-CCCCCh-hhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCC
Q 037627 712 LSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPE-DLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGG 789 (858)
Q Consensus 712 ~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 789 (858)
+|....++. .+ .++|+.|++++| +..++. .+.. +++|+.|+|++|.+++..+..+..+++|+.|+|++|.++.
T Consensus 181 ~n~l~~l~~--~~--~~~L~~L~l~~n~i~~~~~~~l~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 255 (332)
T 2ft3_A 181 EAKLTGIPK--DL--PETLNELHLDHNKIQAIELEDLLR-YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR 255 (332)
T ss_dssp SSBCSSCCS--SS--CSSCSCCBCCSSCCCCCCTTSSTT-CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB
T ss_pred CCCCCccCc--cc--cCCCCEEECCCCcCCccCHHHhcC-CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee
Confidence 887665421 11 267888888885 555553 4444 6888888888888887777788888888888888888763
Q ss_pred ceEEECCCCccccceeeecCCCCCCeEEEcc-------CccccccceeecccccC--C-CCcccCCCCCCceecCCCC
Q 037627 790 KKMICTTKGFHLLEILQLIDLNDLAQWQVED-------GAMPILRGLRVTNAYKL--K-IPERLKSIPLPTEWECDEN 857 (858)
Q Consensus 790 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-------~~l~~L~~L~l~~c~~L--~-lp~~l~~L~~L~~~~c~~N 857 (858)
++.....+++|+.|+++++ .++.++... ..+++|+.|++++|+.. . .|..+..++.|+.+++++|
T Consensus 256 --lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 256 --VPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp --CCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred --cChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 2333456778888888874 465554221 12577889999999855 3 5667788888888877765
No 35
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=2.4e-21 Score=233.91 Aligned_cols=173 Identities=17% Similarity=0.187 Sum_probs=112.9
Q ss_pred cCCCeeEEEEEecccCCCCCCCCCCCCccccccCCeeeeccCCccccccccCCCCCc-cccccCCcccceEeccCCcccc
Q 037627 526 ISSSCRRQAVHFRIMGDWGLGHCNPRSSSLLLFNQRVLNFEGVVSNVLCSVGGCYNL-PEEMVKLVNLKYLRLTNAHIDV 604 (858)
Q Consensus 526 ~~~~~r~l~~~~~~~~~~~~~~~~~~lr~l~~~~~r~L~L~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~L~~n~i~~ 604 (858)
.+...+++.+..+....... ..+.++..| ++|+|++|.. .. .+ |..|+++++|++|+|++|.+..
T Consensus 22 lp~~l~~LdLs~N~i~~i~~-~~~~~l~~L-----~~LdLs~n~~------~~--~i~~~~f~~L~~L~~L~Ls~N~l~~ 87 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTA-SSFPFLEQL-----QLLELGSQYT------PL--TIDKEAFRNLPNLRILDLGSSKIYF 87 (844)
T ss_dssp SCTTCCEEEEESCCCCEECS-SSCSSCCSC-----SEEEECTTCC------CC--EECTTTTSSCTTCCEEECTTCCCCE
T ss_pred CCCCcCEEECCCCcCCccCh-hHCcccccC-----eEEeCCCCCC------cc--ccCHHHhcCCCCCCEEECCCCcCcc
Confidence 56778888888665543321 234455555 8888888851 33 45 6678888888888888888886
Q ss_pred c-CcccccCCCCcEEeccccccccccchh--hhccccccccc---cccccc---cCCCCCccccccceeeccccccc--C
Q 037627 605 I-PSCIAKLQRLQTLDISGNMAFMELPRE--ICELKELRHLI---GNFTGT---LNIENLSNLQTLKYVERGSWAEI--N 673 (858)
Q Consensus 605 l-p~~l~~l~~L~~L~L~~n~~~~~lp~~--~~~l~~L~~L~---~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~--~ 673 (858)
+ |..|.++++|++|+|++|.+.+.+|.. +.++++|++|+ |.+... ..++++++|++|++++|...... .
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~ 167 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167 (844)
T ss_dssp ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG
T ss_pred cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH
Confidence 6 777888888888888888666666655 78888888883 333322 35778888888888888743322 2
Q ss_pred cccc--cCCCeeEEeecccccccchhhhhcCCC------CCeEEeecc
Q 037627 674 PEKL--VNLRDLRIISKYQEEEFSFKSIAYLKN------LQLLSIRLS 713 (858)
Q Consensus 674 ~~~l--~~L~~L~l~~~~~~~~~~~~~l~~l~~------L~~L~l~~~ 713 (858)
+..+ ++|+.|++.+|......+ ..+..+++ |+.|++++|
T Consensus 168 l~~l~~~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 168 LEPLQGKTLSFFSLAANSLYSRVS-VDWGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp GHHHHHCSSCCCEECCSBSCCCCC-CCCCSSSCTTTTCCBSEEBCSSC
T ss_pred cccccCCccceEECCCCccccccc-cchhhcCCccccCceeEEecCCC
Confidence 3333 566666666665444333 33333332 556665555
No 36
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=3.5e-21 Score=232.55 Aligned_cols=281 Identities=16% Similarity=0.145 Sum_probs=181.7
Q ss_pred eeeeccCCccccccccCCCCCc-cccccCCcccceEeccCCc-cccc-CcccccCCCCcEEeccccccccccchhhhccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNL-PEEMVKLVNLKYLRLTNAH-IDVI-PSCIAKLQRLQTLDISGNMAFMELPREICELK 637 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~L~~n~-i~~l-p~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~ 637 (858)
++|+|++|. +. .+ |..|.++++|++|+|++|. +..+ |..|.++++|++|+|++|.+.+..|..|.+++
T Consensus 27 ~~LdLs~N~-------i~--~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~ 97 (844)
T 3j0a_A 27 ERLLLSFNY-------IR--TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97 (844)
T ss_dssp CEEEEESCC-------CC--EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCS
T ss_pred CEEECCCCc-------CC--ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCc
Confidence 899999998 66 44 6789999999999999994 5577 77899999999999999977777799999999
Q ss_pred cccccc---ccccc--ccC--CCCCccccccceeeccccccc---CcccccCCCeeEEeecccccccchhhhhcC--CCC
Q 037627 638 ELRHLI---GNFTG--TLN--IENLSNLQTLKYVERGSWAEI---NPEKLVNLRDLRIISKYQEEEFSFKSIAYL--KNL 705 (858)
Q Consensus 638 ~L~~L~---~~~~~--~~~--~~~l~~L~~L~l~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l--~~L 705 (858)
+|++|+ +.+.. +.. ++++++|++|++++|...... .+..+++|+.|++.+|......+ ..+..+ ++|
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~-~~l~~l~~~~L 176 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE-HELEPLQGKTL 176 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS-GGGHHHHHCSS
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH-HHcccccCCcc
Confidence 999993 44443 333 889999999999999865543 36789999999999998776666 677776 899
Q ss_pred CeEEeeccCCccccCCCCCCCCC------CccEEEeccc-C-CCCChhhhhc----------------------------
Q 037627 706 QLLSIRLSDDTCFDSLQPLSDCS------YLIDLRLSGK-I-EKLPEDLHEV---------------------------- 749 (858)
Q Consensus 706 ~~L~l~~~~~~~~~~~~~l~~l~------~L~~L~l~~~-~-~~~p~~~~~~---------------------------- 749 (858)
+.|+++.|..... ....+..++ +|+.|++++| + ...|..+...
T Consensus 177 ~~L~L~~n~l~~~-~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~ 255 (844)
T 3j0a_A 177 SFFSLAANSLYSR-VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255 (844)
T ss_dssp CCCEECCSBSCCC-CCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred ceEECCCCccccc-cccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence 9999998865442 112222222 2666666654 1 1122111110
Q ss_pred ---------cCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECCCCccccceeeecCCCCCCeE-EEc
Q 037627 750 ---------LPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLNDLAQW-QVE 819 (858)
Q Consensus 750 ---------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~ 819 (858)
.++|+.|+|++|.+.+..+..+..+++|+.|+|++|.+.+.. +.....+++|++|+++++. +..+ +..
T Consensus 256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~ 333 (844)
T 3j0a_A 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA-DEAFYGLDNLQVLNLSYNL-LGELYSSN 333 (844)
T ss_dssp GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC-TTTTTTCSSCCEEEEESCC-CSCCCSCS
T ss_pred ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC-hHHhcCCCCCCEEECCCCC-CCccCHHH
Confidence 145556666666555555555555666666666655554311 1122345555555555532 3322 233
Q ss_pred cCccccccceeecccccCC-CC-cccCCCCCCceecCC
Q 037627 820 DGAMPILRGLRVTNAYKLK-IP-ERLKSIPLPTEWECD 855 (858)
Q Consensus 820 ~~~l~~L~~L~l~~c~~L~-lp-~~l~~L~~L~~~~c~ 855 (858)
...+++|+.|++++| .+. +| ..+..++.|+.++.+
T Consensus 334 ~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls 370 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLR 370 (844)
T ss_dssp CSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEE
T ss_pred hcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECC
Confidence 444555555555555 334 32 234444444444443
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=4.4e-22 Score=210.96 Aligned_cols=218 Identities=17% Similarity=0.191 Sum_probs=149.9
Q ss_pred eeeeccCCccccccccCCC-CCccccccCCcccceEeccC-Cccc-ccCcccccCCCCcEEeccccccccccchhhhccc
Q 037627 561 RVLNFEGVVSNVLCSVGGC-YNLPEEMVKLVNLKYLRLTN-AHID-VIPSCIAKLQRLQTLDISGNMAFMELPREICELK 637 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~-~~lp~~~~~l~~L~~L~L~~-n~i~-~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~ 637 (858)
+.|+|+++. +.. ..+|..++++++|++|++++ |.+. .+|..|.++++|++|++++|.+.+.+|..+..++
T Consensus 53 ~~L~L~~~~-------l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 53 NNLDLSGLN-------LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp EEEEEECCC-------CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred EEEECCCCC-------ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 788888888 651 04788899999999999994 7776 7788999999999999999977778888888888
Q ss_pred cccccc---cccc--cccCCCCCccccccceeecccccc--cCccccc-CCCeeEEeecccccccchhhhhcCCCCCeEE
Q 037627 638 ELRHLI---GNFT--GTLNIENLSNLQTLKYVERGSWAE--INPEKLV-NLRDLRIISKYQEEEFSFKSIAYLKNLQLLS 709 (858)
Q Consensus 638 ~L~~L~---~~~~--~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 709 (858)
+|++|+ +.+. .+..+..+++|++|++++|..... ..+..++ +|+.|++.+|......+ ..+..++ |+.|+
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~-~~~~~l~-L~~L~ 203 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP-PTFANLN-LAFVD 203 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC-GGGGGCC-CSEEE
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCC-hHHhCCc-ccEEE
Confidence 888873 3333 233566777777777777765422 2344555 67777777776665555 6666665 77777
Q ss_pred eeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccC
Q 037627 710 IRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYG 788 (858)
Q Consensus 710 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 788 (858)
+++|.+... ....+..+++|+.|++++| +...+..+.. +++|++|+|++|.+++..|..+..+++|+.|+|++|.++
T Consensus 204 Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 204 LSRNMLEGD-ASVLFGSDKNTQKIHLAKNSLAFDLGKVGL-SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp CCSSEEEEC-CGGGCCTTSCCSEEECCSSEECCBGGGCCC-CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred CcCCcccCc-CCHHHhcCCCCCEEECCCCceeeecCcccc-cCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 776655433 2344566667777777764 4333333333 567777777777776666666777777777777777665
Q ss_pred C
Q 037627 789 G 789 (858)
Q Consensus 789 ~ 789 (858)
+
T Consensus 282 ~ 282 (313)
T 1ogq_A 282 G 282 (313)
T ss_dssp E
T ss_pred c
Confidence 4
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=6.6e-21 Score=225.61 Aligned_cols=294 Identities=19% Similarity=0.136 Sum_probs=167.1
Q ss_pred cCCCeeEEEEEecccCCCCCC--CCCCCCccccccCC----------------eeeeccCCccccccccCCCCCccc-cc
Q 037627 526 ISSSCRRQAVHFRIMGDWGLG--HCNPRSSSLLLFNQ----------------RVLNFEGVVSNVLCSVGGCYNLPE-EM 586 (858)
Q Consensus 526 ~~~~~r~l~~~~~~~~~~~~~--~~~~~lr~l~~~~~----------------r~L~L~~~~~~~~~~~~~~~~lp~-~~ 586 (858)
.+..++++.+..+.....+.. ..+++++.|.+..+ ++|+|++|. +. .+|. .|
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-------l~--~l~~~~~ 93 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-------LS--QLSDKTF 93 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-------CC--CCCTTTT
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-------cC--ccChhhh
Confidence 446778888876655544321 34455555544322 677777776 55 6665 47
Q ss_pred cCCcccceEeccCCcccccC-cccccCCCCcEEeccccccccccchhhhccccccccc---ccccccc----CCCCCccc
Q 037627 587 VKLVNLKYLRLTNAHIDVIP-SCIAKLQRLQTLDISGNMAFMELPREICELKELRHLI---GNFTGTL----NIENLSNL 658 (858)
Q Consensus 587 ~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~---~~~~~~~----~~~~l~~L 658 (858)
+++++|++|++++|.++.+| ..|.++++|++|++++|.+.+..|..+..+++|++|+ +.+.... ....+++|
T Consensus 94 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 173 (680)
T 1ziw_A 94 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173 (680)
T ss_dssp TTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEE
T ss_pred ccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccc
Confidence 77777777777777777665 4577777777777777766565566667777777772 2222211 12234556
Q ss_pred cccceeecccccccC-----------------------------------------------------cccc--cCCCee
Q 037627 659 QTLKYVERGSWAEIN-----------------------------------------------------PEKL--VNLRDL 683 (858)
Q Consensus 659 ~~L~l~~~~~~~~~~-----------------------------------------------------~~~l--~~L~~L 683 (858)
+.|++++|......+ +..+ ++|+.|
T Consensus 174 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L 253 (680)
T 1ziw_A 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253 (680)
T ss_dssp SEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEE
T ss_pred cEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEE
Confidence 666665554221110 1112 125555
Q ss_pred EEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEecccCC-------CCCh----hhhhccCC
Q 037627 684 RIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGKIE-------KLPE----DLHEVLPN 752 (858)
Q Consensus 684 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-------~~p~----~~~~~l~~ 752 (858)
++++|......+ ..+..+++|+.|++++|..... ....+..+++|+.|+++++.. .+|. .+.. +++
T Consensus 254 ~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~-l~~ 330 (680)
T 1ziw_A 254 DLSYNNLNVVGN-DSFAWLPQLEYFFLEYNNIQHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW-LKC 330 (680)
T ss_dssp ECTTSCCCEECT-TTTTTCTTCCEEECCSCCBSEE-CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTT-CTT
T ss_pred ECCCCCcCccCc-ccccCcccccEeeCCCCccCcc-ChhhhcCCCCccEEeccchhhhcccccccccccChhhccc-CCC
Confidence 555554444333 4555666666666666554433 233456666777777765321 2332 3333 688
Q ss_pred ccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECCCCc-----cccceeeecCCCCCCeE-EEccCccccc
Q 037627 753 LECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGF-----HLLEILQLIDLNDLAQW-QVEDGAMPIL 826 (858)
Q Consensus 753 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~-----~~L~~L~l~~~~~l~~~-~~~~~~l~~L 826 (858)
|+.|+|++|.+++..+..+.++++|+.|++++|.+....+. ...| ++|+.|++++|. +..+ +.....+++|
T Consensus 331 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~--~~~f~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L 407 (680)
T 1ziw_A 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT--NETFVSLAHSPLHILNLTKNK-ISKIESDAFSWLGHL 407 (680)
T ss_dssp CCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEEC--TTTTGGGTTSCCCEEECTTSC-CCEECTTTTTTCTTC
T ss_pred CCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcc--hhhhcccccCcCceEECCCCC-CCeEChhhhhCCCCC
Confidence 88999999988888888888888899888888765433221 1111 345555555432 3322 1123344555
Q ss_pred cceeeccc
Q 037627 827 RGLRVTNA 834 (858)
Q Consensus 827 ~~L~l~~c 834 (858)
+.|++++|
T Consensus 408 ~~L~L~~N 415 (680)
T 1ziw_A 408 EVLDLGLN 415 (680)
T ss_dssp CEEECCSS
T ss_pred CEEeCCCC
Confidence 55555555
No 39
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=2e-21 Score=224.09 Aligned_cols=284 Identities=19% Similarity=0.174 Sum_probs=202.0
Q ss_pred CeeeeccCCccccccccCCCCCc-cccccCCcccceEeccCCcccccC-cccccCCCCcEEeccccccccccchhhhccc
Q 037627 560 QRVLNFEGVVSNVLCSVGGCYNL-PEEMVKLVNLKYLRLTNAHIDVIP-SCIAKLQRLQTLDISGNMAFMELPREICELK 637 (858)
Q Consensus 560 ~r~L~L~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~ 637 (858)
.++|+|++|. +. .+ |..|.++++|++|++++|.++.+| ..|.++++|++|++++|.+.+..|..|+.++
T Consensus 28 L~~L~Ls~n~-------l~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 28 MKSLDLSFNK-------IT--YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98 (549)
T ss_dssp CCEEECCSSC-------CC--EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred ccEEECcCCc-------cC--ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence 3899999998 66 55 567999999999999999999875 6799999999999999966665566699999
Q ss_pred cccccc---ccccc---ccCCCCCccccccceeeccc-ccc--cCcccccCCCeeEEeecccccccchhhhhcCCCCCeE
Q 037627 638 ELRHLI---GNFTG---TLNIENLSNLQTLKYVERGS-WAE--INPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLL 708 (858)
Q Consensus 638 ~L~~L~---~~~~~---~~~~~~l~~L~~L~l~~~~~-~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 708 (858)
+|++|+ +.+.. +..++++++|++|++++|.. ... ..+..+++|++|++.+|......+ ..+..+++|+.|
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L 177 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS-QSLKSIRDIHHL 177 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT-TTTTTCSEEEEE
T ss_pred CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh-hhhhccccCceE
Confidence 999993 34432 34688999999999999973 322 246788999999999999877777 889999999999
Q ss_pred EeeccCCccccCCCCCCCCCCccEEEeccc-CCCC---Chhh--------------------------------------
Q 037627 709 SIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKL---PEDL-------------------------------------- 746 (858)
Q Consensus 709 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~---p~~~-------------------------------------- 746 (858)
+++.|.....+. ..+..+++|+.|++++| +..+ |..+
T Consensus 178 ~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l 256 (549)
T 2z81_A 178 TLHLSESAFLLE-IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256 (549)
T ss_dssp EEECSBSTTHHH-HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEE
T ss_pred ecccCcccccch-hhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccc
Confidence 999886543321 11234677888887774 3221 1000
Q ss_pred -------------------------------------------------hhccCCccEEEEecccCCCCCcccc-CCCCC
Q 037627 747 -------------------------------------------------HEVLPNLECLSLKKSHLKEDPMPKL-EKLPN 776 (858)
Q Consensus 747 -------------------------------------------------~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~ 776 (858)
...+++|+.|++++|.+.. .|..+ .++++
T Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~ 335 (549)
T 2z81_A 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQHLKS 335 (549)
T ss_dssp EEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-CCHHHHHHCTT
T ss_pred ccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcccc-CCHHHHhcCcc
Confidence 0112455666666666543 33333 56888
Q ss_pred CCeeEeeccccCCceE--EECCCCccccceeeecCCCCCCeEEE---ccCccccccceeecccccCC-CCcccCCCCCCc
Q 037627 777 LTILDLGLKSYGGKKM--ICTTKGFHLLEILQLIDLNDLAQWQV---EDGAMPILRGLRVTNAYKLK-IPERLKSIPLPT 850 (858)
Q Consensus 777 L~~L~L~~n~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~l~~L~~L~l~~c~~L~-lp~~l~~L~~L~ 850 (858)
|+.|+|++|.+.+... ....+.+++|+.|++++| .++.++. ....+++|+.|++++| .++ +|..+..++.|+
T Consensus 336 L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~ 413 (549)
T 2z81_A 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMR 413 (549)
T ss_dssp CCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCC
T ss_pred ccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCccCChhhccccccc
Confidence 8888888887765321 112356788888888874 4554431 2456788888888888 566 887777777676
Q ss_pred eecCCCC
Q 037627 851 EWECDEN 857 (858)
Q Consensus 851 ~~~c~~N 857 (858)
.++++.|
T Consensus 414 ~L~Ls~N 420 (549)
T 2z81_A 414 FLNLSST 420 (549)
T ss_dssp EEECTTS
T ss_pred EEECCCC
Confidence 6666654
No 40
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=3.1e-21 Score=205.67 Aligned_cols=231 Identities=24% Similarity=0.228 Sum_probs=143.4
Q ss_pred CCeeEEEEEecccCCCCCCCCCCCCccccccCCeeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCc
Q 037627 528 SSCRRQAVHFRIMGDWGLGHCNPRSSSLLLFNQRVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPS 607 (858)
Q Consensus 528 ~~~r~l~~~~~~~~~~~~~~~~~~lr~l~~~~~r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~ 607 (858)
..++.+.+..+.+..++.. ..++..| ++|+|++|. +. .+|..++++++|++|+|++|.++.+|.
T Consensus 81 ~~l~~L~L~~n~l~~lp~~--l~~l~~L-----~~L~L~~n~-------l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~ 144 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQ--AFRLSHL-----QHMTIDAAG-------LM--ELPDTMQQFAGLETLTLARNPLRALPA 144 (328)
T ss_dssp TTCCEEEEESSCCSSCCSC--GGGGTTC-----SEEEEESSC-------CC--CCCSCGGGGTTCSEEEEESCCCCCCCG
T ss_pred cceeEEEccCCCchhcChh--hhhCCCC-----CEEECCCCC-------cc--chhHHHhccCCCCEEECCCCccccCcH
Confidence 4577888887666655432 2223333 899999999 87 899999999999999999999999999
Q ss_pred ccccCCCCcEEeccccccccccchhhhccccccccccccccccCCCCCccccccceeecccccccCcccccCCCeeEEee
Q 037627 608 CIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGNFTGTLNIENLSNLQTLKYVERGSWAEINPEKLVNLRDLRIIS 687 (858)
Q Consensus 608 ~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~ 687 (858)
.+.++++|++|++++|...+.+|..+.... + ...+..+++|+.|++.+
T Consensus 145 ~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~-------------------------~-------~~~~~~l~~L~~L~L~~ 192 (328)
T 4fcg_A 145 SIASLNRLRELSIRACPELTELPEPLASTD-------------------------A-------SGEHQGLVNLQSLRLEW 192 (328)
T ss_dssp GGGGCTTCCEEEEEEETTCCCCCSCSEEEC---------------------------------CCCEEESTTCCEEEEEE
T ss_pred HHhcCcCCCEEECCCCCCccccChhHhhcc-------------------------c-------hhhhccCCCCCEEECcC
Confidence 999999999999999888888887543210 0 01134456666666766
Q ss_pred cccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEecccCCCCChhhhhccCCccEEEEecccCCCCC
Q 037627 688 KYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGKIEKLPEDLHEVLPNLECLSLKKSHLKEDP 767 (858)
Q Consensus 688 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~ 767 (858)
|... .++ ..+..+++|+.|++++|.+.. +|..+.. +++|+.|+|++|.+.+..
T Consensus 193 n~l~-~lp-~~l~~l~~L~~L~L~~N~l~~------------------------l~~~l~~-l~~L~~L~Ls~n~~~~~~ 245 (328)
T 4fcg_A 193 TGIR-SLP-ASIANLQNLKSLKIRNSPLSA------------------------LGPAIHH-LPKLEELDLRGCTALRNY 245 (328)
T ss_dssp ECCC-CCC-GGGGGCTTCCEEEEESSCCCC------------------------CCGGGGG-CTTCCEEECTTCTTCCBC
T ss_pred CCcC-cch-HhhcCCCCCCEEEccCCCCCc------------------------Cchhhcc-CCCCCEEECcCCcchhhh
Confidence 6554 444 567777777777777665543 2333333 344555555554444444
Q ss_pred ccccCCCCCCCeeEeeccccCCceEEECCCCccccceeeecCCCCCCeEEEccCccccccceeeccc
Q 037627 768 MPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLNDLAQWQVEDGAMPILRGLRVTNA 834 (858)
Q Consensus 768 ~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c 834 (858)
|..++++++|+.|+|++|.+.+. ++.....+++|+.|++++|+.+..+|...+.+++|+.+++..+
T Consensus 246 p~~~~~l~~L~~L~L~~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 246 PPIFGGRAPLKRLILKDCSNLLT-LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCCTTCCCCCCEEECTTCTTCCB-CCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred HHHhcCCCCCCEEECCCCCchhh-cchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 44444555555555554444331 1112233444555555554444444444445555555555433
No 41
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=4.1e-21 Score=221.57 Aligned_cols=278 Identities=19% Similarity=0.182 Sum_probs=181.5
Q ss_pred eeeeccCCccccccccCCCCCcc-ccccCCcccceEeccCCccccc-CcccccCCCCcEEeccccccccccchhhhcccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLP-EEMVKLVNLKYLRLTNAHIDVI-PSCIAKLQRLQTLDISGNMAFMELPREICELKE 638 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~ 638 (858)
++|+|++|. +. .+| ..|.++++|++|+|++|.++.+ |..|.++++|++|++++| .+..+|.. .+++
T Consensus 55 ~~L~Ls~N~-------i~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~ 122 (562)
T 3a79_B 55 KALSLSQNS-------IS--ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--PMAS 122 (562)
T ss_dssp CEEECCSSC-------CC--CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--CCTT
T ss_pred CEEECCCCC-------cc--ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--cccc
Confidence 889999999 76 665 6899999999999999999988 677999999999999999 55678876 8999
Q ss_pred ccccc---ccccc---ccCCCCCccccccceeecccccccCcccccCC--CeeEEeeccc--ccccchhhhhc-------
Q 037627 639 LRHLI---GNFTG---TLNIENLSNLQTLKYVERGSWAEINPEKLVNL--RDLRIISKYQ--EEEFSFKSIAY------- 701 (858)
Q Consensus 639 L~~L~---~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~l~~------- 701 (858)
|++|+ |.+.. +..++++++|++|++++|.... ..+..+++| +.|++.+|.. ....+ ..+..
T Consensus 123 L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L~L~~L~L~~n~l~~~~~~~-~~l~~l~~~~l~ 200 (562)
T 3a79_B 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LDLLPVAHLHLSCILLDLVSYHIKGGET-ESLQIPNTTVLH 200 (562)
T ss_dssp CSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TTTGGGTTSCEEEEEEEESSCCCCSSSC-CEEEECCEEEEE
T ss_pred CCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-CchhhhhhceeeEEEeecccccccccCc-ccccccCcceEE
Confidence 99993 44433 2478999999999999988654 345666777 8999988765 22222 22221
Q ss_pred -------------------CC-------------------------------------------------------CCCe
Q 037627 702 -------------------LK-------------------------------------------------------NLQL 707 (858)
Q Consensus 702 -------------------l~-------------------------------------------------------~L~~ 707 (858)
++ +|+.
T Consensus 201 l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~ 280 (562)
T 3a79_B 201 LVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY 280 (562)
T ss_dssp EEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEE
T ss_pred EEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccE
Confidence 11 4555
Q ss_pred EEeeccCCc-cccCCC---------------------------------------------------CCCCCCCccEEEe
Q 037627 708 LSIRLSDDT-CFDSLQ---------------------------------------------------PLSDCSYLIDLRL 735 (858)
Q Consensus 708 L~l~~~~~~-~~~~~~---------------------------------------------------~l~~l~~L~~L~l 735 (858)
|++++|... .++... ....+++|+.|++
T Consensus 281 L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l 360 (562)
T 3a79_B 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNF 360 (562)
T ss_dssp EEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEEC
T ss_pred EEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEEC
Confidence 555555332 111000 0034455666666
Q ss_pred ccc-CCC-CChhhhhccCCccEEEEecccCCCCC--ccccCCCCCCCeeEeeccccCCceEEECCCCccccceeeecCCC
Q 037627 736 SGK-IEK-LPEDLHEVLPNLECLSLKKSHLKEDP--MPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLN 811 (858)
Q Consensus 736 ~~~-~~~-~p~~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~ 811 (858)
++| +.. .|.++.. +++|+.|+|++|.+++.. |..+.++++|+.|+|++|.+++.........+++|+.|++++|.
T Consensus 361 ~~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~ 439 (562)
T 3a79_B 361 TQNVFTDSVFQGCST-LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439 (562)
T ss_dssp CSSCCCTTTTTTCCS-CSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC
T ss_pred CCCccccchhhhhcc-cCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC
Confidence 654 332 3444444 466666666666665422 23456666666666666665541111122345666666666643
Q ss_pred CCCeEEEccCcc-ccccceeecccccCC-CCcccCCCCCCceecCCCC
Q 037627 812 DLAQWQVEDGAM-PILRGLRVTNAYKLK-IPERLKSIPLPTEWECDEN 857 (858)
Q Consensus 812 ~l~~~~~~~~~l-~~L~~L~l~~c~~L~-lp~~l~~L~~L~~~~c~~N 857 (858)
+... ....+ ++|+.|++++| .++ +|.++..++.|+.++.++|
T Consensus 440 -l~~~--~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N 483 (562)
T 3a79_B 440 -LTGS--VFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN 483 (562)
T ss_dssp -CCGG--GGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS
T ss_pred -CCcc--hhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC
Confidence 3211 11233 68999999988 677 9988888888888888776
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=3.7e-21 Score=211.24 Aligned_cols=278 Identities=17% Similarity=0.190 Sum_probs=222.3
Q ss_pred ccccccCCeeeeccCCccccccccCCCCCcccc-ccCCcccceEeccCCcccccCc-ccccCCCCcEEeccccccccccc
Q 037627 553 SSLLLFNQRVLNFEGVVSNVLCSVGGCYNLPEE-MVKLVNLKYLRLTNAHIDVIPS-CIAKLQRLQTLDISGNMAFMELP 630 (858)
Q Consensus 553 r~l~~~~~r~L~L~~~~~~~~~~~~~~~~lp~~-~~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~n~~~~~lp 630 (858)
..+.+.+.++|+++++. ++ .+|.. +..+++|++|++++|.++.+|. .+.++++|++|++++|.+.+..|
T Consensus 40 ~~~~l~~l~~l~l~~~~-------l~--~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 110 (390)
T 3o6n_A 40 EDITLNNQKIVTFKNST-------MR--KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP 110 (390)
T ss_dssp SSGGGCCCSEEEEESCE-------ES--EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cccccCCceEEEecCCc-------hh--hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH
Confidence 34445555999999998 77 78866 6889999999999999998864 78999999999999996666666
Q ss_pred hhhhccccccccc---ccccccc--CCCCCccccccceeeccccccc--CcccccCCCeeEEeecccccccchhhhhcCC
Q 037627 631 REICELKELRHLI---GNFTGTL--NIENLSNLQTLKYVERGSWAEI--NPEKLVNLRDLRIISKYQEEEFSFKSIAYLK 703 (858)
Q Consensus 631 ~~~~~l~~L~~L~---~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~ 703 (858)
..+..+++|++|+ +.+.... .+.++++|++|++++|...... .+..+++|+.|++.+|..... .+..++
T Consensus 111 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~ 186 (390)
T 3o6n_A 111 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIP 186 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC----CGGGCT
T ss_pred HHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc----cccccc
Confidence 7789999999993 3443322 3688999999999999865544 367889999999999875543 356789
Q ss_pred CCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEe
Q 037627 704 NLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDL 782 (858)
Q Consensus 704 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 782 (858)
+|+.|++++|....+ ..+++|+.|++++| +..+|... +++|+.|+|++|.+++. +.+..+++|+.|+|
T Consensus 187 ~L~~L~l~~n~l~~~------~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 255 (390)
T 3o6n_A 187 SLFHANVSYNLLSTL------AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDL 255 (390)
T ss_dssp TCSEEECCSSCCSEE------ECCSSCSEEECCSSCCCEEECCC---CSSCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred ccceeeccccccccc------CCCCcceEEECCCCeeeeccccc---cccccEEECCCCCCccc--HHHcCCCCccEEEC
Confidence 999999998865543 34568999999996 55555433 58999999999999763 68899999999999
Q ss_pred eccccCCceEEECCCCccccceeeecCCCCCCeEEEccCccccccceeecccccCC-CCcccCCCCCCceecCCCC
Q 037627 783 GLKSYGGKKMICTTKGFHLLEILQLIDLNDLAQWQVEDGAMPILRGLRVTNAYKLK-IPERLKSIPLPTEWECDEN 857 (858)
Q Consensus 783 ~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~L~-lp~~l~~L~~L~~~~c~~N 857 (858)
++|.+.+. .+.....+++|+.|+++++ .+..++.....+|+|+.|++++| .++ +|..+..++.|+.++.+.|
T Consensus 256 s~n~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 256 SYNELEKI-MYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp CSSCCCEE-ESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS
T ss_pred CCCcCCCc-ChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCC
Confidence 99998753 1233457899999999984 68888877778999999999999 577 9988777777777777665
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=6.1e-21 Score=204.44 Aligned_cols=255 Identities=19% Similarity=0.164 Sum_probs=192.9
Q ss_pred eeeeccCCccccccccCCCCCcc-ccccCCcccceEeccCCccccc-CcccccCCCCcEEeccccccccccchhhhcccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLP-EEMVKLVNLKYLRLTNAHIDVI-PSCIAKLQRLQTLDISGNMAFMELPREICELKE 638 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~ 638 (858)
++|++++|. +. .++ ..|.++++|++|++++|.++.+ |..+.++++|++|++++| .+..+|..+. ++
T Consensus 57 ~~L~l~~n~-------i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~ 124 (332)
T 2ft3_A 57 TLLDLQNND-------IS--ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SS 124 (332)
T ss_dssp CEEECCSSC-------CC--EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TT
T ss_pred eEEECCCCc-------CC--ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc--cc
Confidence 889999998 66 664 5799999999999999999977 778999999999999999 5567887665 78
Q ss_pred ccccc---ccccccc--CCCCCccccccceeeccccc----ccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEE
Q 037627 639 LRHLI---GNFTGTL--NIENLSNLQTLKYVERGSWA----EINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLS 709 (858)
Q Consensus 639 L~~L~---~~~~~~~--~~~~l~~L~~L~l~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 709 (858)
|++|+ +.+.... .+..+++|+.|++++|.... ...+..+ +|+.|++.+|.... ++ ..+ .++|+.|+
T Consensus 125 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~-~~~--~~~L~~L~ 199 (332)
T 2ft3_A 125 LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IP-KDL--PETLNELH 199 (332)
T ss_dssp CCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CC-SSS--CSSCSCCB
T ss_pred CCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cC-ccc--cCCCCEEE
Confidence 88883 3343322 47899999999999998642 2234445 89999999987654 33 233 27899999
Q ss_pred eeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccC
Q 037627 710 IRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYG 788 (858)
Q Consensus 710 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 788 (858)
+++|.+... ....+..+++|+.|++++| +..++......+++|+.|+|++|.++ .+|..+..+++|+.|++++|.++
T Consensus 200 l~~n~i~~~-~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 200 LDHNKIQAI-ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp CCSSCCCCC-CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC
T ss_pred CCCCcCCcc-CHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC
Confidence 999987765 4456888999999999996 66666543344799999999999997 66778999999999999999987
Q ss_pred CceEEECC-----CCccccceeeecCCCCCCe---EEEccCccccccceeecccc
Q 037627 789 GKKMICTT-----KGFHLLEILQLIDLNDLAQ---WQVEDGAMPILRGLRVTNAY 835 (858)
Q Consensus 789 ~~~~~~~~-----~~~~~L~~L~l~~~~~l~~---~~~~~~~l~~L~~L~l~~c~ 835 (858)
........ ..++.|+.|++.+++ +.. .+.....+++|+.|++++|.
T Consensus 278 ~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 278 KVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccChhHccccccccccccccceEeecCc-ccccccCcccccccchhhhhhccccc
Confidence 54211111 126789999999866 332 22334567899999999885
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=6.4e-21 Score=206.21 Aligned_cols=230 Identities=21% Similarity=0.179 Sum_probs=139.5
Q ss_pred cccCCcccceEeccCCccccc-CcccccCCCCcEEeccccccccccchhhhccccccccccccccccCCCCCccccccce
Q 037627 585 EMVKLVNLKYLRLTNAHIDVI-PSCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGNFTGTLNIENLSNLQTLKY 663 (858)
Q Consensus 585 ~~~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l 663 (858)
.+.++++|++|++++|.++.+ |..+.++++|++|++++|. +..+|.. .++++++|++|++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~------------------~~~~l~~L~~L~L 131 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSS------------------WFKPLSSLTFLNL 131 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHH------------------HHTTCTTCSEEEC
T ss_pred HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHh------------------HhCCCccCCEEEC
Confidence 445555555555555555544 2335555555555555552 2233322 1455666666666
Q ss_pred eecccccccC---cccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-C
Q 037627 664 VERGSWAEIN---PEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-I 739 (858)
Q Consensus 664 ~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~ 739 (858)
++|....... +..+++|+.|++.+|......+...+..+++|+.|++++|..... ....+..+++|++|++++| +
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY-EPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE-CTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc-CHHHHhccccCCeecCCCCcc
Confidence 6666444332 556777777777777533333326777788888888887766554 3456777778888888875 5
Q ss_pred CCCChhhhhccCCccEEEEecccCCCCCccccC---CCCCCCeeEeeccccCCceE---EECCCCccccceeeecCCCCC
Q 037627 740 EKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLE---KLPNLTILDLGLKSYGGKKM---ICTTKGFHLLEILQLIDLNDL 813 (858)
Q Consensus 740 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~L~~n~~~~~~~---~~~~~~~~~L~~L~l~~~~~l 813 (858)
..+|..+...+++|+.|+|++|.+++..+..+. ..+.++.++|+++.+.+..+ +.....+++|+.|+++++ .+
T Consensus 211 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l 289 (353)
T 2z80_A 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QL 289 (353)
T ss_dssp TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CC
T ss_pred ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CC
Confidence 666666555568888888888887765544332 45667777777776654221 111235677888888764 46
Q ss_pred CeEEEcc-Cccccccceeecccc
Q 037627 814 AQWQVED-GAMPILRGLRVTNAY 835 (858)
Q Consensus 814 ~~~~~~~-~~l~~L~~L~l~~c~ 835 (858)
+.++... ..+++|+.|++++|+
T Consensus 290 ~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 290 KSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCHHHHhcCCCCCEEEeeCCC
Confidence 6655443 567788888888775
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=7.7e-21 Score=220.43 Aligned_cols=280 Identities=18% Similarity=0.194 Sum_probs=225.3
Q ss_pred CCccccccCCeeeeccCCccccccccCCCCCcccc-ccCCcccceEeccCCcccccCc-ccccCCCCcEEeccccccccc
Q 037627 551 RSSSLLLFNQRVLNFEGVVSNVLCSVGGCYNLPEE-MVKLVNLKYLRLTNAHIDVIPS-CIAKLQRLQTLDISGNMAFME 628 (858)
Q Consensus 551 ~lr~l~~~~~r~L~L~~~~~~~~~~~~~~~~lp~~-~~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~n~~~~~ 628 (858)
.+..+.+.+.++|+++++. +. .+|.. +..+++|++|+|++|.++.+|. .|.++++|++|+|++|.+.+.
T Consensus 44 ~~~~l~l~~l~~l~l~~~~-------l~--~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 114 (597)
T 3oja_B 44 GFEDITLNNQKIVTFKNST-------MR--KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL 114 (597)
T ss_dssp SCSSGGGCCCSEEEESSCE-------ES--EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CcccccCCCceEEEeeCCC-------CC--CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC
Confidence 3445556666999999998 77 78765 6889999999999999998864 899999999999999976666
Q ss_pred cchhhhccccccccc---ccccccc--CCCCCccccccceeeccccccc--CcccccCCCeeEEeecccccccchhhhhc
Q 037627 629 LPREICELKELRHLI---GNFTGTL--NIENLSNLQTLKYVERGSWAEI--NPEKLVNLRDLRIISKYQEEEFSFKSIAY 701 (858)
Q Consensus 629 lp~~~~~l~~L~~L~---~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~ 701 (858)
.|..|+.+++|++|+ +.+.... .++++++|++|++++|...... .+..+++|+.|++++|..... .+..
T Consensus 115 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~ 190 (597)
T 3oja_B 115 PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSL 190 (597)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC----CGGG
T ss_pred CHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc----Chhh
Confidence 667789999999993 3444332 3689999999999999865544 367889999999999875543 3567
Q ss_pred CCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCee
Q 037627 702 LKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTIL 780 (858)
Q Consensus 702 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 780 (858)
+++|+.|++++|.... +..+++|+.|++++| +..+|..+ .++|+.|+|++|.+++ +..++.+++|+.|
T Consensus 191 l~~L~~L~l~~n~l~~------l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L 259 (597)
T 3oja_B 191 IPSLFHANVSYNLLST------LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEV 259 (597)
T ss_dssp CTTCSEEECCSSCCSE------EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEE
T ss_pred hhhhhhhhcccCcccc------ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEE
Confidence 8899999999886543 345668999999996 55555443 4799999999999976 4789999999999
Q ss_pred EeeccccCCceEEECCCCccccceeeecCCCCCCeEEEccCccccccceeecccccCC-CCcccCCCCCCceecCCCC
Q 037627 781 DLGLKSYGGKKMICTTKGFHLLEILQLIDLNDLAQWQVEDGAMPILRGLRVTNAYKLK-IPERLKSIPLPTEWECDEN 857 (858)
Q Consensus 781 ~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~L~-lp~~l~~L~~L~~~~c~~N 857 (858)
+|++|.+.+. .+.....+++|+.|++++ +.+..++.....+|+|+.|++++| .+. +|..+..++.|..++++.|
T Consensus 260 ~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 260 DLSYNELEKI-MYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN 334 (597)
T ss_dssp ECCSSCCCEE-ESGGGTTCSSCCEEECTT-SCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS
T ss_pred ECCCCccCCC-CHHHhcCccCCCEEECCC-CCCCCCCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCC
Confidence 9999998753 223446789999999998 468888877778999999999999 577 9988877888888777766
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=4.4e-21 Score=203.24 Aligned_cols=241 Identities=20% Similarity=0.153 Sum_probs=155.1
Q ss_pred cccceEeccCCccc---ccCcccccCCCCcEEeccc-cccccccchhhhccccccccc---cccc--cccCCCCCccccc
Q 037627 590 VNLKYLRLTNAHID---VIPSCIAKLQRLQTLDISG-NMAFMELPREICELKELRHLI---GNFT--GTLNIENLSNLQT 660 (858)
Q Consensus 590 ~~L~~L~L~~n~i~---~lp~~l~~l~~L~~L~L~~-n~~~~~lp~~~~~l~~L~~L~---~~~~--~~~~~~~l~~L~~ 660 (858)
.+++.|+|++|.++ .+|..+.++++|++|++++ |.+.+.+|..+..+++|++|+ +.+. .+..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 58999999999998 5899999999999999995 778888999888888888883 3333 2335677777777
Q ss_pred cceeecccccc--cCcccccCCCeeEEeecccccccchhhhhcCC-CCCeEEeeccCCccccCCCCCCCCCCccEEEecc
Q 037627 661 LKYVERGSWAE--INPEKLVNLRDLRIISKYQEEEFSFKSIAYLK-NLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSG 737 (858)
Q Consensus 661 L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 737 (858)
|++++|..... ..+..+++|+.|++.+|......+ ..+..++ +|+.|++++|.+... ....+..++ |+.|++++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~~L~~L~L~~N~l~~~-~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP-DSYGSFSKLFTSMTISRNRLTGK-IPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC-GGGGCCCTTCCEEECCSSEEEEE-CCGGGGGCC-CSEEECCS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC-HHHhhhhhcCcEEECcCCeeecc-CChHHhCCc-ccEEECcC
Confidence 77777764422 235566777777777776655555 6666666 677777776654422 223344444 77777766
Q ss_pred c-CC-CCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECCCCccccceeeecCCCCCC-
Q 037627 738 K-IE-KLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLNDLA- 814 (858)
Q Consensus 738 ~-~~-~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~- 814 (858)
| +. ..|..+.. +++|+.|+|++|.+++.++. +..+++|++|+|++|.+++. ++.....+++|+.|+++++. +.
T Consensus 207 N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~-l~~ 282 (313)
T 1ogq_A 207 NMLEGDASVLFGS-DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGT-LPQGLTQLKFLHSLNVSFNN-LCG 282 (313)
T ss_dssp SEEEECCGGGCCT-TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEEC-CCGGGGGCTTCCEEECCSSE-EEE
T ss_pred CcccCcCCHHHhc-CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCc-CChHHhcCcCCCEEECcCCc-ccc
Confidence 4 33 23333333 56777777777766544433 66667777777777666532 12223455666777776643 33
Q ss_pred eEEEccCccccccceeecccccCC
Q 037627 815 QWQVEDGAMPILRGLRVTNAYKLK 838 (858)
Q Consensus 815 ~~~~~~~~l~~L~~L~l~~c~~L~ 838 (858)
.+|. .+.+++|+.|++++|+.+.
T Consensus 283 ~ip~-~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 283 EIPQ-GGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp ECCC-STTGGGSCGGGTCSSSEEE
T ss_pred cCCC-CccccccChHHhcCCCCcc
Confidence 2222 2556667777777666554
No 47
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.83 E-value=3.6e-20 Score=219.28 Aligned_cols=103 Identities=20% Similarity=0.233 Sum_probs=43.9
Q ss_pred ccCCcccceEeccCCccccc-CcccccCCCCcEEeccccccccccch-hhhccccccccc---cccccc--cCCCCCccc
Q 037627 586 MVKLVNLKYLRLTNAHIDVI-PSCIAKLQRLQTLDISGNMAFMELPR-EICELKELRHLI---GNFTGT--LNIENLSNL 658 (858)
Q Consensus 586 ~~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~n~~~~~lp~-~~~~l~~L~~L~---~~~~~~--~~~~~l~~L 658 (858)
|.++++|++|+|++|.++.+ |..+.++++|++|++++|. +..+|. .|..+++|++|+ +.+... ..++++++|
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChhhhccCCCCCEEECCCCccCccChhHccccCCC
Confidence 44555555555555554433 3334445555555555542 222332 344455555542 122111 134444555
Q ss_pred cccceeeccccccc--CcccccCCCeeEEeecc
Q 037627 659 QTLKYVERGSWAEI--NPEKLVNLRDLRIISKY 689 (858)
Q Consensus 659 ~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~ 689 (858)
++|++++|...... .+..+++|+.|++.+|.
T Consensus 124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 156 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156 (680)
T ss_dssp CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred CEEECCCCcccccCchhhcccccCCEEEccCCc
Confidence 55555444432211 12344444444444443
No 48
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=1.2e-19 Score=208.04 Aligned_cols=258 Identities=15% Similarity=-0.001 Sum_probs=156.8
Q ss_pred eeEEEEEecccCCCCCCCCCCCCccccccCCeeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCccc
Q 037627 530 CRRQAVHFRIMGDWGLGHCNPRSSSLLLFNQRVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPSCI 609 (858)
Q Consensus 530 ~r~l~~~~~~~~~~~~~~~~~~lr~l~~~~~r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~~l 609 (858)
.+.+.+..+.+..+|.... + ..++|+|++|. ++ .+|. .+++|++|+|++|.++.+|.
T Consensus 42 l~~L~ls~n~L~~lp~~l~-~--------~L~~L~L~~N~-------l~--~lp~---~l~~L~~L~Ls~N~l~~lp~-- 98 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP-A--------HITTLVIPDNN-------LT--SLPA---LPPELRTLEVSGNQLTSLPV-- 98 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC-T--------TCSEEEECSCC-------CS--CCCC---CCTTCCEEEECSCCCSCCCC--
T ss_pred CcEEEecCCCcCccChhhC-C--------CCcEEEecCCC-------CC--CCCC---cCCCCCEEEcCCCcCCcCCC--
Confidence 4556665455444443211 1 22777777777 66 6766 46778888888888877776
Q ss_pred ccCCCCcEEeccccccccccchhhhcccccccc---ccccccccCCCCCccccccceeecccccccCcccccCCCeeEEe
Q 037627 610 AKLQRLQTLDISGNMAFMELPREICELKELRHL---IGNFTGTLNIENLSNLQTLKYVERGSWAEINPEKLVNLRDLRII 686 (858)
Q Consensus 610 ~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L---~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~ 686 (858)
.+++|++|++++| .+..+|. .+++|+.| .|.++.... .+++|++|++++|...... ..+++|+.|++.
T Consensus 99 -~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~--~~~~~L~~L~L~ 169 (622)
T 3g06_A 99 -LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLP--ALPSELCKLWAY 169 (622)
T ss_dssp -CCTTCCEEEECSC-CCCCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCC--CCCTTCCEEECC
T ss_pred -CCCCCCEEECcCC-cCCCCCC---CCCCcCEEECCCCCCCcCCC--CCCCCCEEECcCCcCCCcC--CccCCCCEEECC
Confidence 5677888888887 4445555 44556666 233322211 2467777777777654432 245667777777
Q ss_pred ecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCC
Q 037627 687 SKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKE 765 (858)
Q Consensus 687 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~ 765 (858)
+|..... + ..+++|+.|++++|.+..++. .+++|+.|++++| +..+|.. +++|+.|+|++|.+++
T Consensus 170 ~N~l~~l-~----~~~~~L~~L~Ls~N~l~~l~~-----~~~~L~~L~L~~N~l~~l~~~----~~~L~~L~Ls~N~L~~ 235 (622)
T 3g06_A 170 NNQLTSL-P----MLPSGLQELSVSDNQLASLPT-----LPSELYKLWAYNNRLTSLPAL----PSGLKELIVSGNRLTS 235 (622)
T ss_dssp SSCCSCC-C----CCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSC
T ss_pred CCCCCCC-c----ccCCCCcEEECCCCCCCCCCC-----ccchhhEEECcCCcccccCCC----CCCCCEEEccCCccCc
Confidence 7654432 2 345677777777776554321 2357777777775 5555532 3677777777777765
Q ss_pred CCccccCCCCCCCeeEeeccccCCceEEECCCCccccceeeecCCCCCCeEEEccCccccccceeecccccCC-CCccc
Q 037627 766 DPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLNDLAQWQVEDGAMPILRGLRVTNAYKLK-IPERL 843 (858)
Q Consensus 766 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~L~-lp~~l 843 (858)
. | ..+++|+.|+|++|.++... . .+++|+.|++++| .++.+|.....+++|+.|++++|+.-. .|..+
T Consensus 236 l-p---~~l~~L~~L~Ls~N~L~~lp----~-~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 236 L-P---VLPSELKELMVSGNRLTSLP----M-LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp C-C---CCCTTCCEEECCSSCCSCCC----C-CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred C-C---CCCCcCcEEECCCCCCCcCC----c-ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence 3 2 45577777777777776421 1 5667777777764 466666556667777777777775333 44433
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=1.4e-19 Score=193.70 Aligned_cols=255 Identities=18% Similarity=0.180 Sum_probs=189.1
Q ss_pred eeeeccCCccccccccCCCCCccc-cccCCcccceEeccCCccccc-CcccccCCCCcEEeccccccccccchhhhcccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPE-EMVKLVNLKYLRLTNAHIDVI-PSCIAKLQRLQTLDISGNMAFMELPREICELKE 638 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~ 638 (858)
++|+|++|. +. .+|. .|.++++|++|+|++|.++.+ |..+.++++|++|++++| .+..+|..+. ++
T Consensus 55 ~~L~L~~n~-------i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~ 122 (330)
T 1xku_A 55 ALLDLQNNK-------IT--EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KT 122 (330)
T ss_dssp CEEECCSSC-------CC--CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TT
T ss_pred eEEECCCCc-------CC--EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--cc
Confidence 788999998 76 6665 688999999999999999877 778999999999999999 5567776654 67
Q ss_pred ccccc---ccccccc--CCCCCccccccceeeccccc----ccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEE
Q 037627 639 LRHLI---GNFTGTL--NIENLSNLQTLKYVERGSWA----EINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLS 709 (858)
Q Consensus 639 L~~L~---~~~~~~~--~~~~l~~L~~L~l~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 709 (858)
|++|+ +.+.... .+.++++|+.|++++|.... ...+..+++|+.|++.+|..... + ..+ .++|+.|+
T Consensus 123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~-~~~--~~~L~~L~ 198 (330)
T 1xku_A 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-P-QGL--PPSLTELH 198 (330)
T ss_dssp CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-C-SSC--CTTCSEEE
T ss_pred ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC-C-ccc--cccCCEEE
Confidence 88883 3333322 47889999999999988532 33456788999999998876543 3 222 27899999
Q ss_pred eeccCCccccCCCCCCCCCCccEEEeccc-CCCCCh-hhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeecccc
Q 037627 710 IRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPE-DLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSY 787 (858)
Q Consensus 710 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~ 787 (858)
+++|.+... ....+..+++|+.|++++| +..++. .+.. +++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+
T Consensus 199 l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 199 LDGNKITKV-DAASLKGLNNLAKLGLSFNSISAVDNGSLAN-TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp CTTSCCCEE-CTGGGTTCTTCCEEECCSSCCCEECTTTGGG-STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCC
T ss_pred CCCCcCCcc-CHHHhcCCCCCCEEECCCCcCceeChhhccC-CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcC
Confidence 999877655 3456788899999999996 665555 4544 799999999999987 6677899999999999999998
Q ss_pred CCceEEEC-----CCCccccceeeecCCCCCCeEE---EccCccccccceeecccc
Q 037627 788 GGKKMICT-----TKGFHLLEILQLIDLNDLAQWQ---VEDGAMPILRGLRVTNAY 835 (858)
Q Consensus 788 ~~~~~~~~-----~~~~~~L~~L~l~~~~~l~~~~---~~~~~l~~L~~L~l~~c~ 835 (858)
++...... ...++.|+.|++.+++ +..+. .....+++|+.+++++|.
T Consensus 276 ~~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCCCTTSSSCSSCCTTSCCCSEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CccChhhcCCcccccccccccceEeecCc-ccccccCccccccccceeEEEecccC
Confidence 76421111 1135788899999865 43322 234457789999998873
No 50
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.82 E-value=4.8e-20 Score=213.60 Aligned_cols=150 Identities=19% Similarity=0.159 Sum_probs=99.7
Q ss_pred cCCCeeEEEEEecccCCCCCCCCCCCCccccccCCeeeeccCCccccccccCCCCCcc-ccccCCcccceEeccCCcccc
Q 037627 526 ISSSCRRQAVHFRIMGDWGLGHCNPRSSSLLLFNQRVLNFEGVVSNVLCSVGGCYNLP-EEMVKLVNLKYLRLTNAHIDV 604 (858)
Q Consensus 526 ~~~~~r~l~~~~~~~~~~~~~~~~~~lr~l~~~~~r~L~L~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~L~~n~i~~ 604 (858)
.+...+++.+..+.....+. ..+..+..| ++|+|++|. +. .++ ..|+++++|++|+|++|.++.
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~-~~~~~l~~L-----~~L~Ls~n~-------i~--~i~~~~~~~l~~L~~L~L~~n~l~~ 90 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGS-YSFFSFPEL-----QVLDLSRCE-------IQ--TIEDGAYQSLSHLSTLILTGNPIQS 90 (570)
T ss_dssp SCSSCCEEECCSCCCCEECT-TTTTTCSSC-----CEEECTTCC-------CC--EECTTTTTTCTTCCEEECTTCCCCE
T ss_pred ccccccEEEccCCccCccCh-hHhhCCCCc-----eEEECCCCc-------CC--ccCcccccCchhCCEEeCcCCcCCc
Confidence 34567777776555444332 233444444 788888887 65 554 557888888888888888887
Q ss_pred cC-cccccCCCCcEEeccccccccccc-hhhhccccccccc---cccc---cccCCCCCccccccceeeccccccc--Cc
Q 037627 605 IP-SCIAKLQRLQTLDISGNMAFMELP-REICELKELRHLI---GNFT---GTLNIENLSNLQTLKYVERGSWAEI--NP 674 (858)
Q Consensus 605 lp-~~l~~l~~L~~L~L~~n~~~~~lp-~~~~~l~~L~~L~---~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~--~~ 674 (858)
+| ..|.++++|++|++++|. +..+| ..++.+++|++|+ +.+. .+..++++++|++|++++|...... .+
T Consensus 91 ~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~ 169 (570)
T 2z63_A 91 LALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169 (570)
T ss_dssp ECTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGG
T ss_pred cCHhhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHc
Confidence 75 568888888888888884 44444 3578888888883 3333 2556788888888888888754432 34
Q ss_pred ccccCC----CeeEEeecccc
Q 037627 675 EKLVNL----RDLRIISKYQE 691 (858)
Q Consensus 675 ~~l~~L----~~L~l~~~~~~ 691 (858)
..+.+| ..|++.+|...
T Consensus 170 ~~l~~L~~~~~~L~l~~n~l~ 190 (570)
T 2z63_A 170 RVLHQMPLLNLSLDLSLNPMN 190 (570)
T ss_dssp HHHHTCTTCCCEEECTTCCCC
T ss_pred cchhccchhhhhcccCCCCce
Confidence 456666 56666666543
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=1.5e-19 Score=202.36 Aligned_cols=205 Identities=20% Similarity=0.161 Sum_probs=126.7
Q ss_pred ccccCCcccceEeccCCcccccC-cccccCCCCcEEeccccccccccchhhhccccccccccccccccCCCCCccccccc
Q 037627 584 EEMVKLVNLKYLRLTNAHIDVIP-SCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGNFTGTLNIENLSNLQTLK 662 (858)
Q Consensus 584 ~~~~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~ 662 (858)
..|.++++|++|+|++|.++.++ ..|.++++|++|+|++|.+ ..+|. ..+..+++|++|+
T Consensus 93 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~------------------~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 93 DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL-TVIPS------------------GAFEYLSKLRELW 153 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SBCCT------------------TTSSSCTTCCEEE
T ss_pred HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC-CccCh------------------hhhcccCCCCEEE
Confidence 34555555555555555555442 3445555555555555522 22222 1355666777777
Q ss_pred eeeccccccc--CcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-C
Q 037627 663 YVERGSWAEI--NPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-I 739 (858)
Q Consensus 663 l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~ 739 (858)
+++|...... .+..+++|+.|++.+|.....++...+..+++|+.|++++|.+..+ +.+..+++|+.|+|++| +
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM---PNLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC---CCCTTCTTCCEEECTTSCC
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc---ccccccccccEEECcCCcC
Confidence 7777644333 2556777777777776555555545677778888888877766533 45667778888888875 5
Q ss_pred CCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECCCCccccceeeecCCC
Q 037627 740 EKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLN 811 (858)
Q Consensus 740 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~ 811 (858)
..++...+..+++|+.|+|++|.+++..+..|.++++|+.|+|++|.++... ......+++|+.|++.+++
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP-HDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-TTSSTTCTTCCEEECCSSC
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC-hHHhccccCCCEEEccCCC
Confidence 5443333333678888888888887777777788888888888888776432 1112456777777777643
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=201.23 Aligned_cols=218 Identities=21% Similarity=0.198 Sum_probs=113.1
Q ss_pred eeeeccCCccccccccCCCCCcc-ccccCCcccceEeccCCcccccC-cccccCCCCcEEeccccccccccchhhhcccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLP-EEMVKLVNLKYLRLTNAHIDVIP-SCIAKLQRLQTLDISGNMAFMELPREICELKE 638 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~ 638 (858)
++|+|++|. +. .++ ..|.++++|++|+|++|.++.++ ..|.++++|++|+|++|.+ ..+|..
T Consensus 67 ~~L~L~~n~-------i~--~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~------ 130 (440)
T 3zyj_A 67 RLLNLHENQ-------IQ--IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL-TTIPNG------ 130 (440)
T ss_dssp SEEECCSCC-------CC--EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC-SSCCTT------
T ss_pred cEEEccCCc-------CC--eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC-CeeCHh------
Confidence 556666665 44 333 45566666666666666666553 4455666666666666633 233321
Q ss_pred ccccccccccccCCCCCccccccceeeccccccc--CcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCc
Q 037627 639 LRHLIGNFTGTLNIENLSNLQTLKYVERGSWAEI--NPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDT 716 (858)
Q Consensus 639 L~~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 716 (858)
.+..+++|++|++++|...... .+..+++|+.|++.+|.....++...+..+++|+.|++++|.+.
T Consensus 131 ------------~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 131 ------------AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp ------------TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred ------------HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 2444555555555555533222 24455555555555544333333245555666666666655544
Q ss_pred cccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEEC
Q 037627 717 CFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICT 795 (858)
Q Consensus 717 ~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~ 795 (858)
.+ +.+..+++|+.|+|++| +..++...+..+++|+.|+|++|.++...+..|.++++|+.|+|++|.++... ...
T Consensus 199 ~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~ 274 (440)
T 3zyj_A 199 EI---PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP-HDL 274 (440)
T ss_dssp SC---CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC-TTT
T ss_pred cc---cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC-hhH
Confidence 22 34555556666666654 33332222222466666666666665555555666666666666666555321 011
Q ss_pred CCCccccceeeecCC
Q 037627 796 TKGFHLLEILQLIDL 810 (858)
Q Consensus 796 ~~~~~~L~~L~l~~~ 810 (858)
...+++|+.|++.++
T Consensus 275 ~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 275 FTPLHHLERIHLHHN 289 (440)
T ss_dssp TSSCTTCCEEECCSS
T ss_pred hccccCCCEEEcCCC
Confidence 233455566655543
No 53
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=4.5e-19 Score=197.38 Aligned_cols=262 Identities=18% Similarity=0.107 Sum_probs=111.7
Q ss_pred CCCeeEEEEEecccCCCCCCCCCCCCcccccc------------CCeeeeccCCccccccccCCCCCccccccCCcccce
Q 037627 527 SSSCRRQAVHFRIMGDWGLGHCNPRSSSLLLF------------NQRVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKY 594 (858)
Q Consensus 527 ~~~~r~l~~~~~~~~~~~~~~~~~~lr~l~~~------------~~r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~ 594 (858)
+...+.+.+..+....++. ..++++.|.+. ..++|++++|. +. .+| .++++++|++
T Consensus 90 ~~~L~~L~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~-------l~--~lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQ-------LE--KLP-ELQNSSFLKI 157 (454)
T ss_dssp CTTCSEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSC-------CS--SCC-CCTTCTTCCE
T ss_pred cCCCCEEEccCCcCCcccc--ccCCCcEEECCCCccCcccCCCCCCCEEECcCCC-------CC--CCc-ccCCCCCCCE
Confidence 4567777777555554432 12333322221 11444444444 33 344 3444455555
Q ss_pred EeccCCcccccCcccccCCCCcEEeccccccccccchhhhccccccccc---cccccccCCCCCccccccceeecccccc
Q 037627 595 LRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELRHLI---GNFTGTLNIENLSNLQTLKYVERGSWAE 671 (858)
Q Consensus 595 L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~---~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 671 (858)
|++++|.++.+|..+ .+|++|++++|. +..+| .++.+++|++|+ +.+.+... ..++|+.|++++|.....
T Consensus 158 L~l~~N~l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~n~l~~l 230 (454)
T 1jl5_A 158 IDVDNNSLKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNSLKKLPD--LPLSLESIVAGNNILEEL 230 (454)
T ss_dssp EECCSSCCSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCCSSCCC--CCTTCCEEECCSSCCSSC
T ss_pred EECCCCcCcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCcCCcCCC--CcCcccEEECcCCcCCcc
Confidence 555555444444322 244555555442 22233 344444444442 11111111 113445555554443333
Q ss_pred cCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhcc
Q 037627 672 INPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVL 750 (858)
Q Consensus 672 ~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l 750 (858)
..+..+++|+.|++.+|.... ++ . .+++|+.|++++|....++. .+++|+.|++++| +..+|. ..
T Consensus 231 p~~~~l~~L~~L~l~~N~l~~-l~-~---~~~~L~~L~l~~N~l~~l~~-----~~~~L~~L~ls~N~l~~l~~----~~ 296 (454)
T 1jl5_A 231 PELQNLPFLTTIYADNNLLKT-LP-D---LPPSLEALNVRDNYLTDLPE-----LPQSLTFLDVSENIFSGLSE----LP 296 (454)
T ss_dssp CCCTTCTTCCEEECCSSCCSS-CC-S---CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSEESC----CC
T ss_pred cccCCCCCCCEEECCCCcCCc-cc-c---cccccCEEECCCCcccccCc-----ccCcCCEEECcCCccCcccC----cC
Confidence 334444455555555443322 11 1 12444555554444332211 1234555555443 222211 01
Q ss_pred CCccEEEEecccCCCCCccccCCC-CCCCeeEeeccccCCceEEECCCCccccceeeecCCCCCCeEEEccCccccccce
Q 037627 751 PNLECLSLKKSHLKEDPMPKLEKL-PNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLNDLAQWQVEDGAMPILRGL 829 (858)
Q Consensus 751 ~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L 829 (858)
++|+.|++++|.+++ +..+ ++|+.|++++|.+++. +..+++|+.|++++| .++.++. .+++|+.|
T Consensus 297 ~~L~~L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~l-----p~~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L 362 (454)
T 1jl5_A 297 PNLYYLNASSNEIRS-----LCDLPPSLEELNVSNNKLIEL-----PALPPRLERLIASFN-HLAEVPE---LPQNLKQL 362 (454)
T ss_dssp TTCCEEECCSSCCSE-----ECCCCTTCCEEECCSSCCSCC-----CCCCTTCCEEECCSS-CCSCCCC---CCTTCCEE
T ss_pred CcCCEEECcCCcCCc-----ccCCcCcCCEEECCCCccccc-----cccCCcCCEEECCCC-ccccccc---hhhhccEE
Confidence 334444444443332 1122 3566666666655531 112456666666653 3444333 35566666
Q ss_pred eecccc
Q 037627 830 RVTNAY 835 (858)
Q Consensus 830 ~l~~c~ 835 (858)
++++|+
T Consensus 363 ~L~~N~ 368 (454)
T 1jl5_A 363 HVEYNP 368 (454)
T ss_dssp ECCSSC
T ss_pred ECCCCC
Confidence 666664
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=1.2e-19 Score=191.94 Aligned_cols=207 Identities=21% Similarity=0.195 Sum_probs=108.4
Q ss_pred Ccccc-ccCCcccceEeccCCccccc---CcccccCCCCcEEeccccccccccchhhhccccccccccccccccCCCCCc
Q 037627 581 NLPEE-MVKLVNLKYLRLTNAHIDVI---PSCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGNFTGTLNIENLS 656 (858)
Q Consensus 581 ~lp~~-~~~l~~L~~L~L~~n~i~~l---p~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~l~ 656 (858)
.+|.. |.++++|++|+|++|.++.+ |..+..+++|++|++++| .+..+|.. +..++
T Consensus 42 ~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~-------------------~~~l~ 101 (306)
T 2z66_A 42 SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSN-------------------FLGLE 101 (306)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEE-------------------EETCT
T ss_pred ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhh-------------------cCCCC
Confidence 44432 34555555555555554433 334444555555555555 22333333 44455
Q ss_pred cccccceeeccccccc---CcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEE
Q 037627 657 NLQTLKYVERGSWAEI---NPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDL 733 (858)
Q Consensus 657 ~L~~L~l~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 733 (858)
+|++|++++|...... .+..+++|+.|++.+|......+ ..+..+++|+.|++++|..........+..+++|+.|
T Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180 (306)
T ss_dssp TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch-hhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence 5555555555533322 24455566666666665544444 5566666666666666544331123445556666666
Q ss_pred Eeccc-CCCC-ChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECCCCc-cccceeeecCC
Q 037627 734 RLSGK-IEKL-PEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGF-HLLEILQLIDL 810 (858)
Q Consensus 734 ~l~~~-~~~~-p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~-~~L~~L~l~~~ 810 (858)
++++| +..+ |..+.. +++|+.|+|++|.+++..+..+..+++|+.|+|++|.+.+.. +.....+ ++|++|+++++
T Consensus 181 ~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 181 DLSQCQLEQLSPTAFNS-LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK-KQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp ECTTSCCCEECTTTTTT-CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS-SSSCCCCCTTCCEEECTTC
T ss_pred ECCCCCcCCcCHHHhcC-CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC-HHHHHhhhccCCEEEccCC
Confidence 66664 4443 333333 566666666666666555556666666666666666665422 1122234 36666666654
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=4.1e-21 Score=204.09 Aligned_cols=243 Identities=15% Similarity=0.093 Sum_probs=144.6
Q ss_pred cCCcccceEeccCCcccccC-cccccCCCCcEEeccccccccccchhhhccccccccccccccccCCCCCccccccceee
Q 037627 587 VKLVNLKYLRLTNAHIDVIP-SCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGNFTGTLNIENLSNLQTLKYVE 665 (858)
Q Consensus 587 ~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~~ 665 (858)
..+++|++|+|++|.++.++ ..+.++++|++|++++|.+.+..| +..+++|++|+........+..+++|++|++++
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~ 108 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAAN 108 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCS
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCC
Confidence 34445555555555555443 345555555555555553332222 555555555532211111222346777777777
Q ss_pred cccccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCCh
Q 037627 666 RGSWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPE 744 (858)
Q Consensus 666 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~ 744 (858)
|...... ...+++|+.|++.+|......+ ..+..+++|+.|++++|.+...........+++|+.|++++| +..+|.
T Consensus 109 n~l~~~~-~~~~~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 186 (317)
T 3o53_A 109 NNISRVS-CSRGQGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186 (317)
T ss_dssp SCCSEEE-ECCCSSCEEEECCSSCCCSGGG-BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred CccCCcC-ccccCCCCEEECCCCCCCCccc-hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc
Confidence 7654443 3346777777777777655554 567777788888887776655421112235677888888775 444443
Q ss_pred hhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECCCCccccceeeecCCCCC-CeEEEccCcc
Q 037627 745 DLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLNDL-AQWQVEDGAM 823 (858)
Q Consensus 745 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~l 823 (858)
.. . +++|+.|+|++|.+++.+ +.+..+++|+.|+|++|.++. ++.....+++|+.|++++++-. ..++.....+
T Consensus 187 ~~-~-l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~ 261 (317)
T 3o53_A 187 QV-V-FAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (317)
T ss_dssp CC-C-CTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred cc-c-cccCCEEECCCCcCCcch-hhhcccCcccEEECcCCcccc--hhhHhhcCCCCCEEEccCCCccCcCHHHHHhcc
Confidence 32 2 578888888888876543 347778888888888887763 3333456677888888775422 1233334567
Q ss_pred ccccceeecccccCC
Q 037627 824 PILRGLRVTNAYKLK 838 (858)
Q Consensus 824 ~~L~~L~l~~c~~L~ 838 (858)
++|+.|++.+|+.++
T Consensus 262 ~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 262 QRVQTVAKQTVKKLT 276 (317)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ccceEEECCCchhcc
Confidence 788888888776665
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=2e-19 Score=190.26 Aligned_cols=229 Identities=19% Similarity=0.196 Sum_probs=173.0
Q ss_pred cCCCeeEEEEEecccCCCCCCCCCCCCccccccCCeeeeccCCccccccccCCCCCc---cccccCCcccceEeccCCcc
Q 037627 526 ISSSCRRQAVHFRIMGDWGLGHCNPRSSSLLLFNQRVLNFEGVVSNVLCSVGGCYNL---PEEMVKLVNLKYLRLTNAHI 602 (858)
Q Consensus 526 ~~~~~r~l~~~~~~~~~~~~~~~~~~lr~l~~~~~r~L~L~~~~~~~~~~~~~~~~l---p~~~~~l~~L~~L~L~~n~i 602 (858)
.+...+++.+..+.....+.. .+.++..| ++|+|++|. +. .+ |..+..+++|++|++++|.+
T Consensus 26 ~~~~l~~L~L~~n~l~~i~~~-~~~~l~~L-----~~L~L~~n~-------l~--~~~~~~~~~~~~~~L~~L~Ls~n~i 90 (306)
T 2z66_A 26 IPSSATRLELESNKLQSLPHG-VFDKLTQL-----TKLSLSSNG-------LS--FKGCCSQSDFGTTSLKYLDLSFNGV 90 (306)
T ss_dssp CCTTCCEEECCSSCCCCCCTT-TTTTCTTC-----SEEECCSSC-------CC--EEEEEEHHHHSCSCCCEEECCSCSE
T ss_pred CCCCCCEEECCCCccCccCHh-HhhccccC-----CEEECCCCc-------cC--cccCcccccccccccCEEECCCCcc
Confidence 445788888876665554432 23444444 888999998 55 33 57778899999999999999
Q ss_pred cccCcccccCCCCcEEeccccccccccchhhhccccccccccccccccCCCCCccccccceeeccccccc--CcccccCC
Q 037627 603 DVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGNFTGTLNIENLSNLQTLKYVERGSWAEI--NPEKLVNL 680 (858)
Q Consensus 603 ~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~l~~L 680 (858)
+.+|..+.++++|++|++++|.+ ..++. ...+..+++|+.|++++|...... .+..+++|
T Consensus 91 ~~l~~~~~~l~~L~~L~l~~n~l-~~~~~-----------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 152 (306)
T 2z66_A 91 ITMSSNFLGLEQLEHLDFQHSNL-KQMSE-----------------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 152 (306)
T ss_dssp EEEEEEEETCTTCCEEECTTSEE-ESSTT-----------------TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC
T ss_pred ccChhhcCCCCCCCEEECCCCcc-ccccc-----------------chhhhhccCCCEEECCCCcCCccchhhcccCcCC
Confidence 99999999999999999999944 33332 012445566666777766643322 25567888
Q ss_pred CeeEEeeccccc-ccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEE
Q 037627 681 RDLRIISKYQEE-EFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSL 758 (858)
Q Consensus 681 ~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L 758 (858)
+.|++.+|.... ..+ ..+..+++|+.|++++|.+... ....+..+++|+.|++++| +..++......+++|+.|+|
T Consensus 153 ~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 230 (306)
T 2z66_A 153 EVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQLEQL-SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230 (306)
T ss_dssp CEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred CEEECCCCccccccch-hHHhhCcCCCEEECCCCCcCCc-CHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence 888888887655 345 7788899999999999877655 3456788899999999996 66666544444799999999
Q ss_pred ecccCCCCCccccCCCC-CCCeeEeeccccCC
Q 037627 759 KKSHLKEDPMPKLEKLP-NLTILDLGLKSYGG 789 (858)
Q Consensus 759 ~~n~l~~~~~~~l~~l~-~L~~L~L~~n~~~~ 789 (858)
++|.+++..+..+..++ +|+.|+|++|.++.
T Consensus 231 ~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 99999998999999985 99999999999865
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=1.4e-19 Score=189.26 Aligned_cols=203 Identities=18% Similarity=0.153 Sum_probs=107.4
Q ss_pred CccccccCCcccceEeccCCcccccC-cccccCCCCcEEeccccccccccchhhhccccccccc---cc-ccc--ccCCC
Q 037627 581 NLPEEMVKLVNLKYLRLTNAHIDVIP-SCIAKLQRLQTLDISGNMAFMELPREICELKELRHLI---GN-FTG--TLNIE 653 (858)
Q Consensus 581 ~lp~~~~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~---~~-~~~--~~~~~ 653 (858)
.+|..+ .++|++|++++|.++.+| ..+.++++|++|++++|.+.+..|..+..+++|++|+ +. +.. +..+.
T Consensus 25 ~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~ 102 (285)
T 1ozn_A 25 AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH 102 (285)
T ss_dssp SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhc
Confidence 555433 346666666666666654 3466666667777666644443355555555444441 11 111 12344
Q ss_pred CCccccccceeeccccccc--CcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCcc
Q 037627 654 NLSNLQTLKYVERGSWAEI--NPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLI 731 (858)
Q Consensus 654 ~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 731 (858)
.+++|++|++++|...... .+..+++|+.|++.+|......+ ..+..+++|+.|++++|.+..+ ....+..+++|+
T Consensus 103 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~ 180 (285)
T 1ozn_A 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGNRISSV-PERAFRGLHSLD 180 (285)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCC
T ss_pred CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH-hHhccCCCccEEECCCCccccc-CHHHhcCccccC
Confidence 5555666666555533322 13455555666665555443333 4455566666666666554433 122345555666
Q ss_pred EEEeccc-CCCC-ChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccC
Q 037627 732 DLRLSGK-IEKL-PEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYG 788 (858)
Q Consensus 732 ~L~l~~~-~~~~-p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 788 (858)
.|++++| +..+ |..+.. +++|+.|+|++|.+++.++..+..+++|+.|+|++|.+.
T Consensus 181 ~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 181 RLLLHQNRVAHVHPHAFRD-LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp EEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred EEECCCCcccccCHhHccC-cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 6666654 3332 333433 466666666666665555555666666666666666554
No 58
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.78 E-value=2.6e-18 Score=191.24 Aligned_cols=243 Identities=18% Similarity=0.194 Sum_probs=162.0
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhcccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELR 640 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~ 640 (858)
++|++++|. +. .+|..+ .+|++|++++|.++.+| .+.++++|++|++++|. +..+|... ++|+
T Consensus 156 ~~L~l~~N~-------l~--~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~~---~~L~ 218 (454)
T 1jl5_A 156 KIIDVDNNS-------LK--KLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDLP---LSLE 218 (454)
T ss_dssp CEEECCSSC-------CS--CCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCCC---TTCC
T ss_pred CEEECCCCc-------Cc--ccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCCCc---Cccc
Confidence 899999998 77 777654 59999999999999998 69999999999999994 44566533 4777
Q ss_pred cc---ccccccccCCCCCccccccceeecccccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCcc
Q 037627 641 HL---IGNFTGTLNIENLSNLQTLKYVERGSWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTC 717 (858)
Q Consensus 641 ~L---~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 717 (858)
+| .+.+.....++.+++|+.|++++|...... ..+++|+.|++.+|.... ++ . ..++|+.|++++|....
T Consensus 219 ~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~--~~~~~L~~L~l~~N~l~~-l~-~---~~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 219 SIVAGNNILEELPELQNLPFLTTIYADNNLLKTLP--DLPPSLEALNVRDNYLTD-LP-E---LPQSLTFLDVSENIFSG 291 (454)
T ss_dssp EEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCC--SCCTTCCEEECCSSCCSC-CC-C---CCTTCCEEECCSSCCSE
T ss_pred EEECcCCcCCcccccCCCCCCCEEECCCCcCCccc--ccccccCEEECCCCcccc-cC-c---ccCcCCEEECcCCccCc
Confidence 77 344444446889999999999999866543 345899999999987654 33 2 24789999999987765
Q ss_pred ccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECC
Q 037627 718 FDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTT 796 (858)
Q Consensus 718 ~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 796 (858)
++.. +++|+.|++++| +..++ ...++|+.|+|++|++++ .|.. +++|+.|++++|.++... .
T Consensus 292 l~~~-----~~~L~~L~l~~N~l~~i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~lp----~ 354 (454)
T 1jl5_A 292 LSEL-----PPNLYYLNASSNEIRSLC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEVP----E 354 (454)
T ss_dssp ESCC-----CTTCCEEECCSSCCSEEC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCC----C
T ss_pred ccCc-----CCcCCEEECcCCcCCccc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccccc----c
Confidence 4322 368999999986 44433 223589999999999876 3333 688999999999887522 1
Q ss_pred CCccccceeeecCCCCCCe---EEEccCcc-------------ccccceeecccccCC---CCcccCCC
Q 037627 797 KGFHLLEILQLIDLNDLAQ---WQVEDGAM-------------PILRGLRVTNAYKLK---IPERLKSI 846 (858)
Q Consensus 797 ~~~~~L~~L~l~~~~~l~~---~~~~~~~l-------------~~L~~L~l~~c~~L~---lp~~l~~L 846 (858)
.+++|+.|+++++. +.. +|...+.+ ++|+.|++++|+... +|.++..|
T Consensus 355 -~l~~L~~L~L~~N~-l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L 421 (454)
T 1jl5_A 355 -LPQNLKQLHVEYNP-LREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDL 421 (454)
T ss_dssp -CCTTCCEEECCSSC-CSSCCCCCTTCCEEECCC-----------------------------------
T ss_pred -hhhhccEEECCCCC-CCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhhe
Confidence 57889999998754 443 33333333 789999999986332 55554443
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=1.6e-18 Score=198.72 Aligned_cols=247 Identities=20% Similarity=0.105 Sum_probs=146.9
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhcccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELR 640 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~ 640 (858)
++|+++++. ++ .+|..+. ++|++|+|++|.++.+|. .+++|++|+|++| .+..+|. .+++|+
T Consensus 43 ~~L~ls~n~-------L~--~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~ 104 (622)
T 3g06_A 43 AVLNVGESG-------LT--TLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLL 104 (622)
T ss_dssp CEEECCSSC-------CS--CCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCC
T ss_pred cEEEecCCC-------cC--ccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCC
Confidence 566776666 55 6666554 577777777777776665 4566777777777 3445555 456666
Q ss_pred ccc---cccccccCCCCCccccccceeecccccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCcc
Q 037627 641 HLI---GNFTGTLNIENLSNLQTLKYVERGSWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTC 717 (858)
Q Consensus 641 ~L~---~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 717 (858)
+|+ |.+..... .+++|+.|++++|...... ..+++|+.|++++|..... + . .+++|+.|++++|.+..
T Consensus 105 ~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~lp--~~l~~L~~L~Ls~N~l~~l-~-~---~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 105 ELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTSLP--VLPPGLQELSVSDNQLASL-P-A---LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp EEEECSCCCCCCCC--CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCC-C-C---CCTTCCEEECCSSCCSC
T ss_pred EEECcCCcCCCCCC--CCCCcCEEECCCCCCCcCC--CCCCCCCEEECcCCcCCCc-C-C---ccCCCCEEECCCCCCCC
Confidence 662 23322222 4566777777766644432 2346677777776654332 2 1 24566677777666554
Q ss_pred ccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECC
Q 037627 718 FDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTT 796 (858)
Q Consensus 718 ~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 796 (858)
++ ..+++|+.|++++| +..+|.. +++|+.|++++|.++.. |. .+++|+.|+|++|.+++..
T Consensus 176 l~-----~~~~~L~~L~Ls~N~l~~l~~~----~~~L~~L~L~~N~l~~l-~~---~~~~L~~L~Ls~N~L~~lp----- 237 (622)
T 3g06_A 176 LP-----MLPSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSL-PA---LPSGLKELIVSGNRLTSLP----- 237 (622)
T ss_dssp CC-----CCCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSCCC-----
T ss_pred Cc-----ccCCCCcEEECCCCCCCCCCCc----cchhhEEECcCCccccc-CC---CCCCCCEEEccCCccCcCC-----
Confidence 32 33566777777764 4555532 36677777777766532 22 2466777777777666421
Q ss_pred CCccccceeeecCCCCCCeEEEccCccccccceeecccccCC-CCcccCCCCCCceecCCCC
Q 037627 797 KGFHLLEILQLIDLNDLAQWQVEDGAMPILRGLRVTNAYKLK-IPERLKSIPLPTEWECDEN 857 (858)
Q Consensus 797 ~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~L~-lp~~l~~L~~L~~~~c~~N 857 (858)
..+++|+.|++++| .++.++. .+++|+.|++++| .++ +|..+.+++.|..++++.|
T Consensus 238 ~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 238 VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSC
T ss_pred CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCC
Confidence 35567777777764 4555443 4566777777766 455 7766666666666666655
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=4.7e-20 Score=207.43 Aligned_cols=233 Identities=15% Similarity=0.096 Sum_probs=127.0
Q ss_pred ccceEeccCCcccccC-cccccCCCCcEEeccccccccccchhhhccccccccccccccccCCCCCccccccceeecccc
Q 037627 591 NLKYLRLTNAHIDVIP-SCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGNFTGTLNIENLSNLQTLKYVERGSW 669 (858)
Q Consensus 591 ~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~~~~~~ 669 (858)
+|++|+|++|.++.+| ..|.++++|++|+|++|.+.+..| +..+++|++|+........+...++|+.|++++|...
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~ 112 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS 112 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCC
Confidence 4555555555555442 345555555555555553333222 4444455544221111111222356666666666644
Q ss_pred cccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCC-CCCCccEEEeccc-CCCCChhhh
Q 037627 670 AEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLS-DCSYLIDLRLSGK-IEKLPEDLH 747 (858)
Q Consensus 670 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~-~~~~p~~~~ 747 (858)
... ...+++|+.|++.+|......+ ..++.+++|+.|++++|.+... .+..+. .+++|+.|+|++| +..+|...
T Consensus 113 ~~~-~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~- 188 (487)
T 3oja_A 113 RVS-CSRGQGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLNEIDTV-NFAELAASSDTLEHLNLQYNFIYDVKGQV- 188 (487)
T ss_dssp CEE-ECCCSSCEEEECCSSCCCSGGG-BCGGGGSSEEEEECTTSCCCEE-EGGGGGGGTTTCCEEECTTSCCCEEECCC-
T ss_pred CCC-ccccCCCCEEECCCCCCCCCCc-hhhcCCCCCCEEECCCCCCCCc-ChHHHhhhCCcccEEecCCCccccccccc-
Confidence 433 2345667777777776555555 5666677777777777665543 222332 5667777777765 44443322
Q ss_pred hccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECCCCccccceeeecCCCCC-CeEEEccCccccc
Q 037627 748 EVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLNDL-AQWQVEDGAMPIL 826 (858)
Q Consensus 748 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~l~~L 826 (858)
. +++|+.|+|++|.+++.++ .+..+++|+.|+|++|.+++ ++.....+++|+.|++++++-. ..++.....+++|
T Consensus 189 ~-l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L 264 (487)
T 3oja_A 189 V-FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (487)
T ss_dssp C-CTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHH
T ss_pred c-CCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc--cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCC
Confidence 2 5777777777777765433 46677777777777777664 2333445667777777764422 1223334456666
Q ss_pred cceeecc
Q 037627 827 RGLRVTN 833 (858)
Q Consensus 827 ~~L~l~~ 833 (858)
+.|++..
T Consensus 265 ~~l~~~~ 271 (487)
T 3oja_A 265 QTVAKQT 271 (487)
T ss_dssp HHHHHHH
T ss_pred cEEeccc
Confidence 6666653
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=194.55 Aligned_cols=240 Identities=18% Similarity=0.141 Sum_probs=186.4
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccC-cccccCCCCcEEeccccccccccchhhhccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIP-SCIAKLQRLQTLDISGNMAFMELPREICELKEL 639 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L 639 (858)
+.++.++.. +. .+|..+. +++++|+|++|.++.++ ..|.++++|++|+|++|.+....|..
T Consensus 46 ~~v~c~~~~-------l~--~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~------- 107 (440)
T 3zyj_A 46 SKVICVRKN-------LR--EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA------- 107 (440)
T ss_dssp CEEECCSCC-------CS--SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGG-------
T ss_pred CEEEeCCCC-------cC--cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhh-------
Confidence 345555555 66 8887765 68999999999999775 67889999999999999544333333
Q ss_pred cccccccccccCCCCCccccccceeeccccccc--CcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCcc
Q 037627 640 RHLIGNFTGTLNIENLSNLQTLKYVERGSWAEI--NPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTC 717 (858)
Q Consensus 640 ~~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 717 (858)
+.++++|++|++++|...... .+..+++|+.|++.+|......+ ..+..+++|+.|++++|....
T Consensus 108 ------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~l~~~~~l~ 174 (440)
T 3zyj_A 108 ------------FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS-YAFNRIPSLRRLDLGELKRLS 174 (440)
T ss_dssp ------------GTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECT-TTTTTCTTCCEEECCCCTTCC
T ss_pred ------------ccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCH-HHhhhCcccCEeCCCCCCCcc
Confidence 455667777788888755444 36788999999999998776655 789999999999999854332
Q ss_pred ccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECC
Q 037627 718 FDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTT 796 (858)
Q Consensus 718 ~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 796 (858)
.-....+..+++|+.|++++| +..+|. +.. +++|+.|+|++|.+++..+..|.++++|+.|+|++|.+++.. ....
T Consensus 175 ~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~ 251 (440)
T 3zyj_A 175 YISEGAFEGLSNLRYLNLAMCNLREIPN-LTP-LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE-RNAF 251 (440)
T ss_dssp EECTTTTTTCSSCCEEECTTSCCSSCCC-CTT-CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTSS
T ss_pred eeCcchhhcccccCeecCCCCcCccccc-cCC-CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEC-hhhh
Confidence 213446888999999999996 777774 444 799999999999999888999999999999999999987532 1233
Q ss_pred CCccccceeeecCCCCCCeEEEc-cCccccccceeecccc
Q 037627 797 KGFHLLEILQLIDLNDLAQWQVE-DGAMPILRGLRVTNAY 835 (858)
Q Consensus 797 ~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~ 835 (858)
..+++|+.|+++++ .++.++.. ...+++|+.|++++||
T Consensus 252 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 252 DNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 56889999999985 56666543 4578999999999887
No 62
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.77 E-value=2.8e-18 Score=201.65 Aligned_cols=128 Identities=16% Similarity=0.130 Sum_probs=80.8
Q ss_pred CCCccEEEeccc-CCCCChhhhhccCCccEEEEecccC-CCCCccccCCCCCCCeeEeeccccCCceEEECCCCccccce
Q 037627 727 CSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHL-KEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEI 804 (858)
Q Consensus 727 l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l-~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~ 804 (858)
+++++.++++.| +...+......+++|+.|+|++|.+ ....|..+..+++|+.|+|++|.+++.. +.....+++|+.
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~-~~~f~~l~~L~~ 522 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQV 522 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCE
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcC-hHHHcCCCCCCE
Confidence 334444444443 2222333333357788888887763 3345667788888888888888876421 122456788888
Q ss_pred eeecCCCCCCeEEE-ccCccccccceeecccccCC--CCcccCCC-CCCceecCCCC
Q 037627 805 LQLIDLNDLAQWQV-EDGAMPILRGLRVTNAYKLK--IPERLKSI-PLPTEWECDEN 857 (858)
Q Consensus 805 L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~L~--lp~~l~~L-~~L~~~~c~~N 857 (858)
|+++++ .+..++. ....+++|+.|++++|. ++ .|..+.++ +.|+.++.+.|
T Consensus 523 L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 523 LNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp EECTTS-CCCBCCCGGGTTCTTCCEEECTTSC-CCBCCSSCTTCCCTTCCEEECTTC
T ss_pred EECCCC-cCCCCChhHHhCCCCCCEEECCCCc-CCCCCHHHHHhhhCcCCEEEeeCC
Confidence 888874 4666543 35677888888888884 55 56667666 56777666555
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.76 E-value=3.5e-19 Score=188.67 Aligned_cols=216 Identities=19% Similarity=0.191 Sum_probs=140.0
Q ss_pred eeeeccCCccccccccCCCCCcccccc-------CCcccceEeccCCccc-ccCccc--ccCCCCcEEeccccccccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMV-------KLVNLKYLRLTNAHID-VIPSCI--AKLQRLQTLDISGNMAFMELP 630 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~-------~l~~L~~L~L~~n~i~-~lp~~l--~~l~~L~~L~L~~n~~~~~lp 630 (858)
+.|+|++|. +....+|..+. ++++|++|+|++|.++ .+|..+ ..+++|++|++++|.+.+. |
T Consensus 66 ~~L~L~~n~-------l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~ 137 (312)
T 1wwl_A 66 KSLSLKRLT-------VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-D 137 (312)
T ss_dssp HHCCCCEEE-------EEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-S
T ss_pred hhccccccc-------ccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-h
Confidence 677777776 53224565555 6888888888888887 577776 7888888888888854444 7
Q ss_pred hhhhcc-----ccccccc---cccccc--cCCCCCccccccceeecccccc----cC--cccccCCCeeEEeeccccc--
Q 037627 631 REICEL-----KELRHLI---GNFTGT--LNIENLSNLQTLKYVERGSWAE----IN--PEKLVNLRDLRIISKYQEE-- 692 (858)
Q Consensus 631 ~~~~~l-----~~L~~L~---~~~~~~--~~~~~l~~L~~L~l~~~~~~~~----~~--~~~l~~L~~L~l~~~~~~~-- 692 (858)
..+..+ ++|++|+ +.+... ..++.+++|++|++++|..... .. +..+++|+.|++.+|....
T Consensus 138 ~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 217 (312)
T 1wwl_A 138 AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217 (312)
T ss_dssp SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH
T ss_pred HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH
Confidence 777776 6777772 333322 3566777777777777763221 11 2566777777777776542
Q ss_pred ccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCcccc
Q 037627 693 EFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKL 771 (858)
Q Consensus 693 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l 771 (858)
..+...+..+++|+.|++++|.+........+..+++|+.|++++| +..+|.++. ++|+.|+|++|++++. |. +
T Consensus 218 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~~-p~-~ 292 (312)
T 1wwl_A 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRN-PS-P 292 (312)
T ss_dssp HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC---SEEEEEECCSSCCCSC-CC-T
T ss_pred HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc---CCceEEECCCCCCCCC-hh-H
Confidence 1221334566777777777776655432344555667777777775 566666553 5677777777777654 33 6
Q ss_pred CCCCCCCeeEeeccccCC
Q 037627 772 EKLPNLTILDLGLKSYGG 789 (858)
Q Consensus 772 ~~l~~L~~L~L~~n~~~~ 789 (858)
..+++|+.|+|++|.+++
T Consensus 293 ~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 293 DELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTSCEEEEEECTTCTTTC
T ss_pred hhCCCCCEEeccCCCCCC
Confidence 677777777777776654
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=188.71 Aligned_cols=245 Identities=17% Similarity=0.173 Sum_probs=176.7
Q ss_pred CCCeeEEEEEecccCCCCCCCCCCCCccccccCCeeeeccCCccccccccCCCCCc-cccccCCcccceEeccCCccccc
Q 037627 527 SSSCRRQAVHFRIMGDWGLGHCNPRSSSLLLFNQRVLNFEGVVSNVLCSVGGCYNL-PEEMVKLVNLKYLRLTNAHIDVI 605 (858)
Q Consensus 527 ~~~~r~l~~~~~~~~~~~~~~~~~~lr~l~~~~~r~L~L~~~~~~~~~~~~~~~~l-p~~~~~l~~L~~L~L~~n~i~~l 605 (858)
+...+++.+..+.....+. ..+.++..| ++|++++|. +. .+ |..|.++++|++|++++|.++.+
T Consensus 51 ~~~L~~L~l~~n~i~~~~~-~~~~~l~~L-----~~L~L~~n~-------l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~ 115 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISN-SDLQRCVNL-----QALVLTSNG-------IN--TIEEDSFSSLGSLEHLDLSYNYLSNL 115 (353)
T ss_dssp CTTCCEEECTTSCCCEECT-TTTTTCTTC-----CEEECTTSC-------CC--EECTTTTTTCTTCCEEECCSSCCSSC
T ss_pred cccCcEEECCCCcCcccCH-HHhccCCCC-----CEEECCCCc-------cC--ccCHhhcCCCCCCCEEECCCCcCCcC
Confidence 3567788887555554432 123444444 889999998 66 55 45699999999999999999999
Q ss_pred Ccc-cccCCCCcEEeccccccccccch--hhhccccccccc---c-cccc--ccCCCCCccccccceeecccccc--cCc
Q 037627 606 PSC-IAKLQRLQTLDISGNMAFMELPR--EICELKELRHLI---G-NFTG--TLNIENLSNLQTLKYVERGSWAE--INP 674 (858)
Q Consensus 606 p~~-l~~l~~L~~L~L~~n~~~~~lp~--~~~~l~~L~~L~---~-~~~~--~~~~~~l~~L~~L~l~~~~~~~~--~~~ 674 (858)
|.. +.++++|++|++++| .+..+|. .+..+++|++|+ + .+.. +..+.++++|++|++++|..... ..+
T Consensus 116 ~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 194 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL 194 (353)
T ss_dssp CHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred CHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH
Confidence 877 889999999999999 5556665 688899999983 2 1222 23678899999999999885443 346
Q ss_pred ccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCcccc--CCCCCCCCCCccEEEeccc-C-----CCCChhh
Q 037627 675 EKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFD--SLQPLSDCSYLIDLRLSGK-I-----EKLPEDL 746 (858)
Q Consensus 675 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~l~~l~~L~~L~l~~~-~-----~~~p~~~ 746 (858)
..+++|++|++.+|....... ..+..+++|+.|++++|...... .+......+.++.++++++ + ..+|.++
T Consensus 195 ~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l 273 (353)
T 2z80_A 195 KSIQNVSHLILHMKQHILLLE-IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL 273 (353)
T ss_dssp TTCSEEEEEEEECSCSTTHHH-HHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHH
T ss_pred hccccCCeecCCCCccccchh-hhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHH
Confidence 678888899998887644333 55667889999999988766542 1122334566777777763 2 2356666
Q ss_pred hhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCC
Q 037627 747 HEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGG 789 (858)
Q Consensus 747 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 789 (858)
.. +++|+.|+|++|+++..+...+..+++|+.|+|++|.+.+
T Consensus 274 ~~-l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 274 NQ-ISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hc-ccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 66 6889999999998885555556888999999999888765
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=4.5e-20 Score=196.04 Aligned_cols=256 Identities=14% Similarity=0.106 Sum_probs=191.2
Q ss_pred eeeeccCCccccccccCCCCCcc-ccccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLP-EEMVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKEL 639 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L 639 (858)
++|+|++|. +. .++ ..|..+++|++|+|++|.++.+++ +..+++|++|++++|. +..+| ..++|
T Consensus 37 ~~L~L~~n~-------l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~----~~~~L 101 (317)
T 3o53_A 37 KELDLSGNP-------LS--QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL----VGPSI 101 (317)
T ss_dssp SEEECTTSC-------CC--CCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE----ECTTC
T ss_pred CEEECcCCc-------cC--cCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc----CCCCc
Confidence 889999998 76 554 679999999999999999997765 9999999999999994 44444 34788
Q ss_pred cccc---cccccccCCCCCccccccceeeccccccc--CcccccCCCeeEEeecccccccchhhh-hcCCCCCeEEeecc
Q 037627 640 RHLI---GNFTGTLNIENLSNLQTLKYVERGSWAEI--NPEKLVNLRDLRIISKYQEEEFSFKSI-AYLKNLQLLSIRLS 713 (858)
Q Consensus 640 ~~L~---~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~ 713 (858)
++|+ +.+... ....+++|+.|++++|...... .+..+++|+.|++++|......+ ..+ ..+++|+.|++++|
T Consensus 102 ~~L~l~~n~l~~~-~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 102 ETLHAANNNISRV-SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYN 179 (317)
T ss_dssp CEEECCSSCCSEE-EECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG-GGGGGGTTTCCEEECTTS
T ss_pred CEEECCCCccCCc-CccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH-HHHhhccCcCCEEECCCC
Confidence 8883 333322 2345789999999999865543 45678999999999998776655 454 57899999999999
Q ss_pred CCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceE
Q 037627 714 DDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKM 792 (858)
Q Consensus 714 ~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~ 792 (858)
.+... +....+++|+.|++++| +..+|..+.. +++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+.....
T Consensus 180 ~l~~~---~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~ 254 (317)
T 3o53_A 180 FIYDV---KGQVVFAKLKTLDLSSNKLAFMGPEFQS-AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL 254 (317)
T ss_dssp CCCEE---ECCCCCTTCCEEECCSSCCCEECGGGGG-GTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHH
T ss_pred cCccc---ccccccccCCEEECCCCcCCcchhhhcc-cCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCH
Confidence 87755 34445889999999996 7778888776 699999999999997 456778999999999999999873323
Q ss_pred EECCCCccccceeeecCCCCCCeEEEccCccccccceeecccccCC
Q 037627 793 ICTTKGFHLLEILQLIDLNDLAQWQVEDGAMPILRGLRVTNAYKLK 838 (858)
Q Consensus 793 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~L~ 838 (858)
+.....+++|+.|++.+++.++.........+.+....-..|..+.
T Consensus 255 ~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l~ 300 (317)
T 3o53_A 255 RDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300 (317)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCCT
T ss_pred HHHHhccccceEEECCCchhccCCchhccCCCceecccceeeccCC
Confidence 3334567888888888654444332222223333333333455443
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=2.3e-18 Score=192.66 Aligned_cols=240 Identities=20% Similarity=0.147 Sum_probs=186.1
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCccccc-CcccccCCCCcEEeccccccccccchhhhccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVI-PSCIAKLQRLQTLDISGNMAFMELPREICELKEL 639 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L 639 (858)
+.++.++.. +. .+|..+. ++|++|+|++|.++.+ |..|.++++|++|+|++|.+.+..|..
T Consensus 57 ~~v~c~~~~-------l~--~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~------- 118 (452)
T 3zyi_A 57 SKVVCTRRG-------LS--EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA------- 118 (452)
T ss_dssp CEEECCSSC-------CS--SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-------
T ss_pred cEEEECCCC-------cC--ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhh-------
Confidence 445555555 55 7887665 6899999999999877 567899999999999999554443343
Q ss_pred cccccccccccCCCCCccccccceeeccccccc--CcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCcc
Q 037627 640 RHLIGNFTGTLNIENLSNLQTLKYVERGSWAEI--NPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTC 717 (858)
Q Consensus 640 ~~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 717 (858)
+.++++|++|++++|...... .+..+++|+.|++++|......+ ..+..+++|+.|++++|....
T Consensus 119 ------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~~~~l~ 185 (452)
T 3zyi_A 119 ------------FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS-YAFNRVPSLMRLDLGELKKLE 185 (452)
T ss_dssp ------------TTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECT-TTTTTCTTCCEEECCCCTTCC
T ss_pred ------------ccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCH-hHHhcCCcccEEeCCCCCCcc
Confidence 455677777888888755443 26678999999999998776555 789999999999999853322
Q ss_pred ccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECC
Q 037627 718 FDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTT 796 (858)
Q Consensus 718 ~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 796 (858)
.-....+..+++|+.|++++| +..+|. +.. +++|+.|+|++|.+++..+..|.++++|+.|+|++|.+++.. ....
T Consensus 186 ~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~ 262 (452)
T 3zyi_A 186 YISEGAFEGLFNLKYLNLGMCNIKDMPN-LTP-LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE-RNAF 262 (452)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCSSCCC-CTT-CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC-TTTT
T ss_pred ccChhhccCCCCCCEEECCCCccccccc-ccc-cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC-HHHh
Confidence 213446888999999999996 666764 444 799999999999999888999999999999999999987532 1234
Q ss_pred CCccccceeeecCCCCCCeEEEc-cCccccccceeecccc
Q 037627 797 KGFHLLEILQLIDLNDLAQWQVE-DGAMPILRGLRVTNAY 835 (858)
Q Consensus 797 ~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~ 835 (858)
..+++|+.|+++++ .+..++.. ...+++|+.|++++|+
T Consensus 263 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 263 DGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 56889999999985 57666543 4568999999999986
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=2.1e-19 Score=190.40 Aligned_cols=176 Identities=15% Similarity=0.090 Sum_probs=124.8
Q ss_pred CCCccccccceeeccccccc-Ccccc-----cCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccc-cCCC--C
Q 037627 653 ENLSNLQTLKYVERGSWAEI-NPEKL-----VNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCF-DSLQ--P 723 (858)
Q Consensus 653 ~~l~~L~~L~l~~~~~~~~~-~~~~l-----~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~--~ 723 (858)
..+++|++|++++|...... .+..+ ++|+.|++.+|......+ ..+..+++|+.|++++|..... +.+. .
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC-EQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCT-TTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchH-HHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 66778888888888754442 13344 788888888888766665 7888888999999988864321 1111 2
Q ss_pred CCCCCCccEEEeccc-CCC---CChhhhhccCCccEEEEecccCCCCCc-cccCCCCCCCeeEeeccccCCceEEECCCC
Q 037627 724 LSDCSYLIDLRLSGK-IEK---LPEDLHEVLPNLECLSLKKSHLKEDPM-PKLEKLPNLTILDLGLKSYGGKKMICTTKG 798 (858)
Q Consensus 724 l~~l~~L~~L~l~~~-~~~---~p~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~ 798 (858)
+..+++|++|++++| +.. ++..++..+++|+.|+|++|.+++..| ..+..+++|+.|+|++|.++. ++ ...
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~--ip--~~~ 272 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ--VP--KGL 272 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS--CC--SSC
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh--hh--hhc
Confidence 367788999999886 553 333444446899999999998887664 556678899999999988873 22 222
Q ss_pred ccccceeeecCCCCCCeEEEccCccccccceeecccc
Q 037627 799 FHLLEILQLIDLNDLAQWQVEDGAMPILRGLRVTNAY 835 (858)
Q Consensus 799 ~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 835 (858)
+++|++|+++++ .++.++. ...+++|+.|++++|+
T Consensus 273 ~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 273 PAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CSEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred cCCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence 378888988874 5666654 6678889999988885
No 68
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.74 E-value=3e-19 Score=154.79 Aligned_cols=82 Identities=28% Similarity=0.452 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc--cCCChHHHHHHHHHHHhhhhhHHHHhhhhc
Q 037627 4 AVVSFVVQRLGDYLIQEAAFLGEVRTEVRSLKKELEWMLCFIKDAEDK--QVDDPMIRQWVSDIRDVAHDIEDVLYNFTL 81 (858)
Q Consensus 4 ~~~~~~~~kl~~~l~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~~~~~--~~~~~~~~~wl~~~~~~~~d~ed~ld~~~~ 81 (858)
|+++.+++||++++.+|+.++.||++++++|+++|++|++||.||+.+ +..|++++.|+++|||+|||+|||||+|.+
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~ 80 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLV 80 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999998 568999999999999999999999999998
Q ss_pred cccc
Q 037627 82 KVDD 85 (858)
Q Consensus 82 ~~~~ 85 (858)
+...
T Consensus 81 ~~~~ 84 (115)
T 3qfl_A 81 QVDG 84 (115)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 7753
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=2e-17 Score=171.22 Aligned_cols=196 Identities=23% Similarity=0.349 Sum_probs=131.6
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCc-ccccCCCCcEEeccccccccccchhhhccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPS-CIAKLQRLQTLDISGNMAFMELPREICELKEL 639 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L 639 (858)
+.++++++. ++ .+|..+. ++|++|+|++|.++.+|. .|.++++|++|++++|. +..+|..+
T Consensus 19 ~~l~~~~~~-------l~--~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~------ 80 (270)
T 2o6q_A 19 NSVDCSSKK-------LT--AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGI------ 80 (270)
T ss_dssp TEEECTTSC-------CS--SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTT------
T ss_pred CEEEccCCC-------CC--ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhh------
Confidence 566777777 66 6776554 578888888888887764 57788888888888883 33444322
Q ss_pred cccccccccccCCCCCccccccceeeccccccc--CcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCcc
Q 037627 640 RHLIGNFTGTLNIENLSNLQTLKYVERGSWAEI--NPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTC 717 (858)
Q Consensus 640 ~~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 717 (858)
+..+++|++|++++|...... .+..+++|+.|++.+|......+ ..+..+++|+.|++++|.+..
T Consensus 81 ------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~ 147 (270)
T 2o6q_A 81 ------------FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP-RVFDSLTKLTYLSLGYNELQS 147 (270)
T ss_dssp ------------TSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCC
T ss_pred ------------hcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH-HHhCcCcCCCEEECCCCcCCc
Confidence 344556666666666543332 23456677777777766555444 667777888888888776654
Q ss_pred ccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccC
Q 037627 718 FDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYG 788 (858)
Q Consensus 718 ~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 788 (858)
+ ....+..+++|+.|++++| +..+|...+..+++|+.|+|++|.++..++..+..+++|+.|+|++|.+.
T Consensus 148 ~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 148 L-PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp C-CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred c-CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 4 2233667777888888775 66666554433678888888888877666666777888888888877764
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=4.6e-18 Score=176.87 Aligned_cols=198 Identities=20% Similarity=0.190 Sum_probs=123.0
Q ss_pred eeeeccCCccccccccCCCCCccc-cccCCcccceEeccCCcccccCc-ccccCCCCcEEeccccccccccchhhhcccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPE-EMVKLVNLKYLRLTNAHIDVIPS-CIAKLQRLQTLDISGNMAFMELPREICELKE 638 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~ 638 (858)
++|++++|. +. .++. .|.++++|++|++++|.++.+|. .+.++++|++|++++|.+.+..|.
T Consensus 31 ~~L~ls~n~-------l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------- 94 (276)
T 2z62_A 31 KNLDLSFNP-------LR--HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG------- 94 (276)
T ss_dssp CEEECTTCC-------CC--EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-------
T ss_pred cEEECCCCc-------cc--ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh-------
Confidence 555555555 44 3333 45555555555555555554432 345555555555555533332223
Q ss_pred ccccccccccccCCCCCccccccceeeccccccc--CcccccCCCeeEEeecccccc-cchhhhhcCCCCCeEEeeccCC
Q 037627 639 LRHLIGNFTGTLNIENLSNLQTLKYVERGSWAEI--NPEKLVNLRDLRIISKYQEEE-FSFKSIAYLKNLQLLSIRLSDD 715 (858)
Q Consensus 639 L~~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~ 715 (858)
.+.++++|++|++++|...... .+..+++|+.|++.+|..... ++ ..+..+++|+.|++++|.+
T Consensus 95 ------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~-~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 95 ------------AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp ------------TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC-GGGGGCTTCCEEECCSSCC
T ss_pred ------------hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCc-hhhccCCCCCEEECCCCCC
Confidence 3455566666666666543332 255667777777777765443 34 6777888888888888766
Q ss_pred ccccCCCCCCCCCCcc----EEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCC
Q 037627 716 TCFDSLQPLSDCSYLI----DLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGG 789 (858)
Q Consensus 716 ~~~~~~~~l~~l~~L~----~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 789 (858)
..+ ....+..+++|+ .|++++| +..+|...+. ..+|+.|+|++|.+++.++..+..+++|+.|+|++|.+..
T Consensus 162 ~~~-~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 162 QSI-YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CEE-CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CcC-CHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 544 122333333444 7788875 6666666665 3689999999999887777778889999999999888864
No 71
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.73 E-value=2e-16 Score=170.92 Aligned_cols=294 Identities=16% Similarity=0.136 Sum_probs=182.9
Q ss_pred CcCCceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCC------CHHHH
Q 037627 173 SIEGNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDY------DTKDL 246 (858)
Q Consensus 173 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~------~~~~~ 246 (858)
..++.|+||+.+++++.+++..+ +++.|+|++|+|||||++++++. . . .+|+++.... +...+
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHITREEL 77 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBCHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCCHHHH
Confidence 45577999999999999988653 59999999999999999999973 2 1 7788765432 55666
Q ss_pred HHHHHHhcccc--------------ccchhhhhccHHHHHHHHHHHhcC-ceEEEEEEcCCChhh---------HHHHHh
Q 037627 247 LLRIIRSFKIN--------------VLTRELEEMREEDLERYLHNCLQG-KSYLVVVDDAWQKET---------WESLKR 302 (858)
Q Consensus 247 ~~~i~~~l~~~--------------~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlvlDd~~~~~~---------~~~l~~ 302 (858)
+..+...+... ...........+.+.+.+.+.... ++++||+||++.... +..+..
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~ 157 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY 157 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH
Confidence 77666655420 000001123455666666665543 399999999976432 222322
Q ss_pred hCCCCCCCcEEEEEeCchhH-Hhh---------c-CCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 037627 303 AFPDNKNGSRVIITTRIKEV-AER---------S-DENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEK 371 (858)
Q Consensus 303 ~l~~~~~gs~ilvTtR~~~~-~~~---------~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~ 371 (858)
.... .++.++|+|++...+ ... . ......+.+.+|+.+|+.+++............ ++.+..|++.
T Consensus 158 ~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~--~~~~~~i~~~ 234 (350)
T 2qen_A 158 AYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP--ENEIEEAVEL 234 (350)
T ss_dssp HHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC--HHHHHHHHHH
T ss_pred HHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHH
Confidence 2211 246789999987653 211 0 011147999999999999999876533222111 4567899999
Q ss_pred cCCChHHHHHHHhHhcC-CChHHH-HHHHHHHHhhhhcCccchhhHHHhhhccC---cHHHHHHHhHhcCCCCCceeCHH
Q 037627 372 CRGLPLAIVVLGGLLSM-KKPQEW-RRVRDHLWQHLKNDCIHISSLLNLSFRNL---SHELKLCFLYLGLFPEDFEINVQ 446 (858)
Q Consensus 372 ~~G~Plai~~~~~~l~~-~~~~~w-~~~~~~l~~~~~~~~~~i~~~l~~s~~~L---~~~~k~~f~~la~fp~~~~i~~~ 446 (858)
|+|+|+++..++..+.. .+...+ ....+... ..+.-.+..+ ++..+..+..+|. . .++..
T Consensus 235 tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~l~~~~~~~~~~l~~la~--g--~~~~~ 299 (350)
T 2qen_A 235 LDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAK-----------GLIMGELEELRRRSPRYVDILRAIAL--G--YNRWS 299 (350)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-----------HHHHHHHHHHHHHCHHHHHHHHHHHT--T--CCSHH
T ss_pred hCCCHHHHHHHHHHHhccccHhHHHHHHHHHHH-----------HHHHHHHHHHHhCChhHHHHHHHHHh--C--CCCHH
Confidence 99999999999876432 222221 11111111 1111112222 7889999999987 2 24555
Q ss_pred HHHHHHHHcCccccCCCCCHHHHHHHHHHHHHhcccccccccCCCcEeEEE-EcHhHHHHHH
Q 037627 447 TLIRLLVAEGFIQQDTDRSTEEVAGEILDELINRSLIQIDKRCWGRIATCR-VHDLLRDLAI 507 (858)
Q Consensus 447 ~l~~~w~aeg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~-~H~lir~~~~ 507 (858)
.+........ .+. .......+++.|.+.++|.... ..|+ .|++++++.+
T Consensus 300 ~l~~~~~~~~-----~~~-~~~~~~~~l~~L~~~gli~~~~------~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 300 LIRDYLAVKG-----TKI-PEPRLYALLENLKKMNWIVEED------NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHTT-----CCC-CHHHHHHHHHHHHHTTSEEEET------TEEEESSHHHHHHHT
T ss_pred HHHHHHHHHh-----CCC-CHHHHHHHHHHHHhCCCEEecC------CEEEEecHHHHHHHc
Confidence 5554432211 011 2345678999999999997643 2344 4889998763
No 72
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=1.5e-17 Score=173.90 Aligned_cols=244 Identities=18% Similarity=0.143 Sum_probs=177.5
Q ss_pred ceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhccccccccc---ccccc--ccCCCCCccccccceeecc
Q 037627 593 KYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELRHLI---GNFTG--TLNIENLSNLQTLKYVERG 667 (858)
Q Consensus 593 ~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~---~~~~~--~~~~~~l~~L~~L~l~~~~ 667 (858)
++++.+++.++.+|..+ .++|++|++++|.+....+..|..+++|++|+ +.+.. +..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 68899999999999765 57999999999965555556788999999993 33332 3468889999999999886
Q ss_pred -cccc--cCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCC
Q 037627 668 -SWAE--INPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLP 743 (858)
Q Consensus 668 -~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p 743 (858)
.... ..+..+++|+.|++.+|......+ ..+..+++|+.|++++|.+... ....+..+++|+.|++++| +..+|
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGP-GLFRGLAALQYLYLQDNALQAL-PDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECH-hHhhCCcCCCEEECCCCccccc-CHhHhccCCCccEEECCCCcccccC
Confidence 4333 346678889999999888766656 7788899999999998877654 3344778889999999986 66666
Q ss_pred hhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECCCCccccceeeecCCCCCCeEEEccCcc
Q 037627 744 EDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLNDLAQWQVEDGAM 823 (858)
Q Consensus 744 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l 823 (858)
...+..+++|+.|+|++|.+++..|..+..+++|+.|+|++|.+++... .....+++|+.|++++++-...... ...+
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~~~~-~~~~ 247 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT-EALAPLRALQYLRLNDNPWVCDCRA-RPLW 247 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH-HHHTTCTTCCEEECCSSCEECSGGG-HHHH
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH-HHcccCcccCEEeccCCCccCCCCc-HHHH
Confidence 6534347899999999999888888889999999999999998876321 1235678899999987542111100 0112
Q ss_pred ccccceeecccccCC--CCccc
Q 037627 824 PILRGLRVTNAYKLK--IPERL 843 (858)
Q Consensus 824 ~~L~~L~l~~c~~L~--lp~~l 843 (858)
..|+.+....+ .+. .|..+
T Consensus 248 ~~l~~~~~~~~-~~~c~~p~~l 268 (285)
T 1ozn_A 248 AWLQKFRGSSS-EVPCSLPQRL 268 (285)
T ss_dssp HHHHHCCSEEC-CCBEEESGGG
T ss_pred HHHHhcccccC-ccccCCchHh
Confidence 34566666555 333 66644
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=2e-17 Score=167.93 Aligned_cols=201 Identities=17% Similarity=0.215 Sum_probs=131.9
Q ss_pred CccccccCCcccceEeccCCcccccCc-ccccCCCCcEEeccccccccccchhhhccccccccccccccccCCCCCcccc
Q 037627 581 NLPEEMVKLVNLKYLRLTNAHIDVIPS-CIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGNFTGTLNIENLSNLQ 659 (858)
Q Consensus 581 ~lp~~~~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~l~~L~ 659 (858)
.+|. +. .+|++|++++|.++.+|. .+.++++|++|++++|..++.+|.. .+.++++|+
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~------------------~f~~l~~L~ 83 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESH------------------SFYNLSKVT 83 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTT------------------TEESCTTCC
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHh------------------HcCCCcCCc
Confidence 6666 43 378888888888887765 5777888888888888424444431 133445555
Q ss_pred ccceee-ccccccc--CcccccCCCeeEEeecccccccchhhhhcCCCCC---eEEeecc-CCccccCCCCCCCCCCcc-
Q 037627 660 TLKYVE-RGSWAEI--NPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQ---LLSIRLS-DDTCFDSLQPLSDCSYLI- 731 (858)
Q Consensus 660 ~L~l~~-~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~---~L~l~~~-~~~~~~~~~~l~~l~~L~- 731 (858)
+|++++ |...... .+..+++|+.|++.+|.... ++ . +..+++|+ .|++++| .+..+ ....+..+++|+
T Consensus 84 ~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp-~-~~~l~~L~~L~~L~l~~N~~l~~i-~~~~~~~l~~L~~ 159 (239)
T 2xwt_C 84 HIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FP-D-LTKVYSTDIFFILEITDNPYMTSI-PVNAFQGLCNETL 159 (239)
T ss_dssp EEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CC-C-CTTCCBCCSEEEEEEESCTTCCEE-CTTTTTTTBSSEE
T ss_pred EEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-cc-c-cccccccccccEEECCCCcchhhc-Ccccccchhccee
Confidence 556665 4433322 23456666677776665443 33 2 55566666 8888877 55544 233467777888
Q ss_pred EEEeccc-CCCCChhhhhccCCccEEEEeccc-CCCCCccccCCC-CCCCeeEeeccccCCceEEECCCCccccceeeec
Q 037627 732 DLRLSGK-IEKLPEDLHEVLPNLECLSLKKSH-LKEDPMPKLEKL-PNLTILDLGLKSYGGKKMICTTKGFHLLEILQLI 808 (858)
Q Consensus 732 ~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l-~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~ 808 (858)
.|++++| +..+|...+.. ++|+.|+|++|. ++..++..|.++ ++|+.|+|++|.++.. ....|++|+.|++.
T Consensus 160 ~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l----~~~~~~~L~~L~l~ 234 (239)
T 2xwt_C 160 TLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL----PSKGLEHLKELIAR 234 (239)
T ss_dssp EEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC----CCTTCTTCSEEECT
T ss_pred EEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC----ChhHhccCceeecc
Confidence 8888775 66677776664 788888888884 876667778888 8888888888887652 23367777777777
Q ss_pred CCC
Q 037627 809 DLN 811 (858)
Q Consensus 809 ~~~ 811 (858)
++.
T Consensus 235 ~~~ 237 (239)
T 2xwt_C 235 NTW 237 (239)
T ss_dssp TC-
T ss_pred Ccc
Confidence 643
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=7.7e-18 Score=189.38 Aligned_cols=230 Identities=14% Similarity=0.016 Sum_probs=167.5
Q ss_pred CCCCcEEeccccccccccchhhhccccccccc---cccccccCCCCCccccccceeecccccccCcccccCCCeeEEeec
Q 037627 612 LQRLQTLDISGNMAFMELPREICELKELRHLI---GNFTGTLNIENLSNLQTLKYVERGSWAEINPEKLVNLRDLRIISK 688 (858)
Q Consensus 612 l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~---~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~ 688 (858)
+++|++|+|++|.+.+..|..|..+++|++|+ |.+.+..+++.+++|+.|++++|...... ..++|+.|++++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~L~~N 109 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL---VGPSIETLHAANN 109 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEE---ECTTCCEEECCSS
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCC---CCCCcCEEECcCC
Confidence 44899999999977666677899999999993 45555556888999999999988765443 3378888888888
Q ss_pred ccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCC-CChhhhhccCCccEEEEecccCCCC
Q 037627 689 YQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEK-LPEDLHEVLPNLECLSLKKSHLKED 766 (858)
Q Consensus 689 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~-~p~~~~~~l~~L~~L~L~~n~l~~~ 766 (858)
......+ . .+++|+.|++++|.+... ....+..+++|+.|++++| +.. .|..+...+++|+.|+|++|.+++.
T Consensus 110 ~l~~~~~-~---~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 110 NISRVSC-S---RGQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp CCCCEEE-C---CCSSCEEEECCSSCCCSG-GGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred cCCCCCc-c---ccCCCCEEECCCCCCCCC-CchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 7665544 2 457888899988877654 3345667888899999886 443 4555553468899999999988754
Q ss_pred CccccCCCCCCCeeEeeccccCCceEEECCCCccccceeeecCCCCCCeEEEccCccccccceeecccccCC--CCcccC
Q 037627 767 PMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLNDLAQWQVEDGAMPILRGLRVTNAYKLK--IPERLK 844 (858)
Q Consensus 767 ~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~L~--lp~~l~ 844 (858)
+.+..+++|+.|+|++|.+++. +.....+++|+.|++++| .+..++.....+++|+.|++++|+... +|..+.
T Consensus 185 --~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 185 --KGQVVFAKLKTLDLSSNKLAFM--GPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp --ECCCCCTTCCEEECCSSCCCEE--CGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred --cccccCCCCCEEECCCCCCCCC--CHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 3345688899999998888752 233456788888888874 577766666678888899998887552 666666
Q ss_pred CCCCCceecC
Q 037627 845 SIPLPTEWEC 854 (858)
Q Consensus 845 ~L~~L~~~~c 854 (858)
.++.|..+.+
T Consensus 260 ~l~~L~~l~~ 269 (487)
T 3oja_A 260 KNQRVQTVAK 269 (487)
T ss_dssp TCHHHHHHHH
T ss_pred hCCCCcEEec
Confidence 6655554443
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=4.2e-17 Score=170.24 Aligned_cols=198 Identities=17% Similarity=0.108 Sum_probs=126.3
Q ss_pred ccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhccccccccc---cccccccCCCCCccccccc
Q 037627 586 MVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELRHLI---GNFTGTLNIENLSNLQTLK 662 (858)
Q Consensus 586 ~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~---~~~~~~~~~~~l~~L~~L~ 662 (858)
+.++++|+.++++++.++.+|..+. ++|++|++++|.+.+..|..|..+++|++|+ +.+......+.+++|+.|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 83 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD 83 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEE
Confidence 3445556666666666666655443 4566666666644433344455555555551 2222222335677777777
Q ss_pred eeecccccccC-cccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CC
Q 037627 663 YVERGSWAEIN-PEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IE 740 (858)
Q Consensus 663 l~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~ 740 (858)
+++|....... +..+++|+.|++++|......+ ..+..+++|+.|++++|.+..+ ....+..+++|+.|++++| +.
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCS-STTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCcCcccCH-HHHcCCCCCCEEECCCCCCCcc-ChhhcccccCCCEEECCCCcCC
Confidence 77777543332 4567777888888777665555 6777788888888887776654 2334667778888888875 66
Q ss_pred CCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccC
Q 037627 741 KLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYG 788 (858)
Q Consensus 741 ~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 788 (858)
.+|...+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+.
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 777766555688888888888876 45566667778888888877764
No 76
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.71 E-value=7e-17 Score=189.68 Aligned_cols=109 Identities=22% Similarity=0.268 Sum_probs=63.3
Q ss_pred CCCCCCccEEEeccc--CCC-CChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECCCCcc
Q 037627 724 LSDCSYLIDLRLSGK--IEK-LPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFH 800 (858)
Q Consensus 724 l~~l~~L~~L~l~~~--~~~-~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~ 800 (858)
+..+++|+.|++++| ... .|..+.. +++|+.|+|++|++++.+|..|.++++|+.|+|++|.+++.. +.....++
T Consensus 465 ~~~~~~L~~L~Ls~N~~~~~~~~~~~~~-l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~ 542 (635)
T 4g8a_A 465 FNGLSSLEVLKMAGNSFQENFLPDIFTE-LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD-TFPYKCLN 542 (635)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCC-CGGGTTCT
T ss_pred cccchhhhhhhhhhcccccccCchhhhh-ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCC-hhHHhCCC
Confidence 445566777777664 222 3333333 567777777777776666666777777777777777665431 11234566
Q ss_pred ccceeeecCCCCCCeEEE-ccCcc-ccccceeecccc
Q 037627 801 LLEILQLIDLNDLAQWQV-EDGAM-PILRGLRVTNAY 835 (858)
Q Consensus 801 ~L~~L~l~~~~~l~~~~~-~~~~l-~~L~~L~l~~c~ 835 (858)
+|+.|+++++ .+..++. ....+ ++|+.|++++||
T Consensus 543 ~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 543 SLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 6777777763 3444322 23334 467777777655
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=2.7e-17 Score=173.47 Aligned_cols=189 Identities=25% Similarity=0.294 Sum_probs=137.6
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhcccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELR 640 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~ 640 (858)
+.|++++|. +. .+| .+..+++|++|++++|.++.+|. +.++++|++|++++|. +..+|
T Consensus 44 ~~L~l~~~~-------i~--~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~---------- 101 (308)
T 1h6u_A 44 TTLSAFGTG-------VT--TIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS---------- 101 (308)
T ss_dssp CEEECTTSC-------CC--CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG----------
T ss_pred CEEEeeCCC-------cc--Cch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch----------
Confidence 667777776 55 555 56677777777777777777765 7777777777777773 33332
Q ss_pred ccccccccccCCCCCccccccceeecccccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccC
Q 037627 641 HLIGNFTGTLNIENLSNLQTLKYVERGSWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDS 720 (858)
Q Consensus 641 ~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 720 (858)
.+..+++|+.|++++|.......+..+++|+.|++.+|..... ..+..+++|+.|++++|.+...
T Consensus 102 ----------~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~-- 166 (308)
T 1h6u_A 102 ----------AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNI---SPLAGLTNLQYLSIGNAQVSDL-- 166 (308)
T ss_dssp ----------GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCCEEECCSSCCCCC--
T ss_pred ----------hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcC---ccccCCCCccEEEccCCcCCCC--
Confidence 3455667777777777766555577788888888888765443 2377888999999988876644
Q ss_pred CCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCce
Q 037627 721 LQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKK 791 (858)
Q Consensus 721 ~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~ 791 (858)
+.+..+++|+.|++++| +..++. +.. +++|+.|+|++|.+++.. .+..+++|+.|+|++|.+++..
T Consensus 167 -~~l~~l~~L~~L~l~~n~l~~~~~-l~~-l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 167 -TPLANLSKLTTLKADDNKISDISP-LAS-LPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp -GGGTTCTTCCEEECCSSCCCCCGG-GGG-CTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCC
T ss_pred -hhhcCCCCCCEEECCCCccCcChh-hcC-CCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCC
Confidence 33778889999999986 666664 444 799999999999987654 4889999999999999887643
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=2e-17 Score=171.40 Aligned_cols=178 Identities=22% Similarity=0.295 Sum_probs=85.7
Q ss_pred ccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhccccccccccccccccCCCCCccccccceee
Q 037627 586 MVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGNFTGTLNIENLSNLQTLKYVE 665 (858)
Q Consensus 586 ~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~~ 665 (858)
+..+++|+.|++++|.++.++ .+..+++|++|++++|.+. .++ . +..+++|++|++++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~-~~~-~-------------------l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLH-DIS-A-------------------LKELTNLTYLILTG 94 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCC-CCG-G-------------------GTTCTTCCEEECTT
T ss_pred cccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCC-Cch-h-------------------hcCCCCCCEEECCC
Confidence 445667777777777766664 3666777777777777322 222 1 23344444455544
Q ss_pred cccccccC--cccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCC
Q 037627 666 RGSWAEIN--PEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKL 742 (858)
Q Consensus 666 ~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~ 742 (858)
|....... +..+++|+.|++.+|......+ ..+..+++|+.|++++|.+... ....+..+++|+.|++++| +..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPD-GVFDKLTNLTYLNLAHNQLQSL-PKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCH-HHhccCCCCCEEECCCCccCcc-CHHHhccCccCCEEECCCCCcCcc
Confidence 44322221 2334444444444444332222 3445555555555555544322 1122344445555555543 3333
Q ss_pred ChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeecccc
Q 037627 743 PEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSY 787 (858)
Q Consensus 743 p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~ 787 (858)
|...+..+++|+.|+|++|.+++.++..+..+++|+.|+|++|.+
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 333322245555555555555544444445555555555555544
No 79
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=4.2e-17 Score=175.67 Aligned_cols=236 Identities=17% Similarity=0.126 Sum_probs=155.6
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCc-ccccCCCCcEEeccccccccccch-hhhcccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPS-CIAKLQRLQTLDISGNMAFMELPR-EICELKE 638 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~n~~~~~lp~-~~~~l~~ 638 (858)
++++-+++. ++ .+|..+ .+++++|+|++|+|+.+|. .|.++++|++|+|++|.+.+.+|. .|.++++
T Consensus 12 ~~v~C~~~~-------Lt--~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~ 80 (350)
T 4ay9_X 12 RVFLCQESK-------VT--EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80 (350)
T ss_dssp TEEEEESTT-------CC--SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTT
T ss_pred CEEEecCCC-------CC--ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchh
Confidence 445555655 66 888876 3689999999999999986 589999999999999976677764 3455555
Q ss_pred ccccccccccccCCCCCccccccceeecccccc--cCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeecc-CC
Q 037627 639 LRHLIGNFTGTLNIENLSNLQTLKYVERGSWAE--INPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLS-DD 715 (858)
Q Consensus 639 L~~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~ 715 (858)
|+.+ +.+..|+.... ..+..+++|+.|++.+|......+ ..+....++..|++..+ .+
T Consensus 81 l~~~------------------l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~l~~l~l~~~~~i 141 (350)
T 4ay9_X 81 LHEI------------------RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKVLLDIQDNINI 141 (350)
T ss_dssp CCEE------------------EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC-CTTCCBSSCEEEEEESCTTC
T ss_pred hhhh------------------hcccCCcccccCchhhhhccccccccccccccccCCc-hhhcccchhhhhhhcccccc
Confidence 5443 11222322221 123455555566665555443333 33334445556666543 23
Q ss_pred ccccCCCCCCCC-CCccEEEeccc-CCCCChhhhhccCCccEEEEec-ccCCCCCccccCCCCCCCeeEeeccccCCceE
Q 037627 716 TCFDSLQPLSDC-SYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKK-SHLKEDPMPKLEKLPNLTILDLGLKSYGGKKM 792 (858)
Q Consensus 716 ~~~~~~~~l~~l-~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~ 792 (858)
..+ ....+..+ ..++.|++++| +..+|...+. ..+|+.|++++ |.++..++..|.++++|+.|+|++|.++..
T Consensus 142 ~~l-~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l-- 217 (350)
T 4ay9_X 142 HTI-ERNSFVGLSFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL-- 217 (350)
T ss_dssp CEE-CTTSSTTSBSSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC--
T ss_pred ccc-cccchhhcchhhhhhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc--
Confidence 322 12223333 35777888875 6677777766 47888888875 556655556788889999999998888752
Q ss_pred EECCCCccccceeeecCCCCCCeEEEccCccccccceeecc
Q 037627 793 ICTTKGFHLLEILQLIDLNDLAQWQVEDGAMPILRGLRVTN 833 (858)
Q Consensus 793 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 833 (858)
....|.+|+.|.+.++++++.+| ....+++|+.+++.+
T Consensus 218 --p~~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 218 --PSYGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp --CSSSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred --ChhhhccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 34568888888888888888877 356788888888864
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=1.5e-17 Score=172.30 Aligned_cols=231 Identities=17% Similarity=0.122 Sum_probs=180.5
Q ss_pred CcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhccccccccccccccccCCCCCccccccceeeccc
Q 037627 589 LVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGNFTGTLNIENLSNLQTLKYVERGS 668 (858)
Q Consensus 589 l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~~~~~ 668 (858)
+..+..+++.++.+..+ ..+..+++|+.|++++| .+..++. +..+++|+.|++++|..
T Consensus 18 ~~~l~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~-~i~~~~~--------------------l~~l~~L~~L~l~~n~l 75 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDA-VTQNELNSIDQIIANNS-DIKSVQG--------------------IQYLPNVRYLALGGNKL 75 (272)
T ss_dssp HHHHHHHHHTCSCTTSE-ECHHHHTTCCEEECTTS-CCCCCTT--------------------GGGCTTCCEEECTTSCC
T ss_pred HHHHHHHHhcCcccccc-cccccccceeeeeeCCC-Ccccccc--------------------cccCCCCcEEECCCCCC
Confidence 44566677777777655 24667899999999998 3444332 34567777888888876
Q ss_pred ccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhh
Q 037627 669 WAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLH 747 (858)
Q Consensus 669 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~ 747 (858)
.....+..+++|+.|++.+|......+ ..+..+++|+.|++++|.+... ....+..+++|+.|++++| +..+|...+
T Consensus 76 ~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 153 (272)
T 3rfs_A 76 HDISALKELTNLTYLILTGNQLQSLPN-GVFDKLTNLKELVLVENQLQSL-PDGVFDKLTNLTYLNLAHNQLQSLPKGVF 153 (272)
T ss_dssp CCCGGGTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCchhhcCCCCCCEEECCCCccCccCh-hHhcCCcCCCEEECCCCcCCcc-CHHHhccCCCCCEEECCCCccCccCHHHh
Confidence 666667889999999999998776555 7789999999999999987754 3344788999999999996 777777665
Q ss_pred hccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECCCCccccceeeecCCCCCCeEEEccCcccccc
Q 037627 748 EVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLNDLAQWQVEDGAMPILR 827 (858)
Q Consensus 748 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~ 827 (858)
..+++|+.|+|++|.+++.++..++.+++|+.|+|++|.+++.. ......+++|+.|++.+++- .+.+|+|+
T Consensus 154 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~-------~~~~~~l~ 225 (272)
T 3rfs_A 154 DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNPW-------DCTCPGIR 225 (272)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCB-------CCCTTTTH
T ss_pred ccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC-HHHHhCCcCCCEEEccCCCc-------cccCcHHH
Confidence 45799999999999999888888999999999999999998632 12235789999999998652 24688999
Q ss_pred ceeecccccCC-CCcccCCCCCCce
Q 037627 828 GLRVTNAYKLK-IPERLKSIPLPTE 851 (858)
Q Consensus 828 ~L~l~~c~~L~-lp~~l~~L~~L~~ 851 (858)
.|++++|.... +|..+..+.....
T Consensus 226 ~l~~~~n~~~g~ip~~~~~~~~~~~ 250 (272)
T 3rfs_A 226 YLSEWINKHSGVVRNSAGSVAPDSA 250 (272)
T ss_dssp HHHHHHHHTGGGBBCTTSCBCGGGS
T ss_pred HHHHHHHhCCCcccCcccccCCCCC
Confidence 99999885444 9998887766443
No 81
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.70 E-value=4.1e-16 Score=168.89 Aligned_cols=294 Identities=13% Similarity=0.082 Sum_probs=175.9
Q ss_pred CcCCceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCC-----CCHHHHH
Q 037627 173 SIEGNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQD-----YDTKDLL 247 (858)
Q Consensus 173 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~ 247 (858)
..++.|+||+.+++++.+ +.. +++.|+|++|+|||||++++++. ... ..+|+++... .+....+
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKDFL 78 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHHHH
T ss_pred CCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHHHH
Confidence 355789999999999999 743 59999999999999999999973 322 2678887643 3445555
Q ss_pred HHHHHhccc------------------cccc--hhh-----hhccHHHHHHHHHHHhcCceEEEEEEcCCCh-----hhH
Q 037627 248 LRIIRSFKI------------------NVLT--REL-----EEMREEDLERYLHNCLQGKSYLVVVDDAWQK-----ETW 297 (858)
Q Consensus 248 ~~i~~~l~~------------------~~~~--~~~-----~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-----~~~ 297 (858)
..+...+.. ..+. ... .......+.+.+.+... ++++|||||++.. ..+
T Consensus 79 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~ 157 (357)
T 2fna_A 79 LELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNL 157 (357)
T ss_dssp HHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCC
T ss_pred HHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhH
Confidence 555443321 0000 000 11234455555554333 4999999999753 223
Q ss_pred HHHHhhCCCCCCCcEEEEEeCchhHHh-h---------cC-CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHH
Q 037627 298 ESLKRAFPDNKNGSRVIITTRIKEVAE-R---------SD-ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGR 366 (858)
Q Consensus 298 ~~l~~~l~~~~~gs~ilvTtR~~~~~~-~---------~~-~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~ 366 (858)
..+...+.....+.++|+|++...... . .. .....+.+.+|+.+|+.+++...........+. ..
T Consensus 158 ~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~ 233 (357)
T 2fna_A 158 LPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YE 233 (357)
T ss_dssp HHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HH
T ss_pred HHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HH
Confidence 222222211123678999999765322 1 11 111578999999999999998764321111111 17
Q ss_pred HHHHHcCCChHHHHHHHhHhcCC-ChHHHHH-HHHHHHhhhhcCccchhhHHH-hhh--ccCcHHHHHHHhHhcCCCCCc
Q 037627 367 EMVEKCRGLPLAIVVLGGLLSMK-KPQEWRR-VRDHLWQHLKNDCIHISSLLN-LSF--RNLSHELKLCFLYLGLFPEDF 441 (858)
Q Consensus 367 ~I~~~~~G~Plai~~~~~~l~~~-~~~~w~~-~~~~l~~~~~~~~~~i~~~l~-~s~--~~L~~~~k~~f~~la~fp~~~ 441 (858)
.|++.|+|+|+++..++..+... +...|.. +.+..... +...+. +.+ ..+++..+..+..+|+ +
T Consensus 234 ~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~l~~~~~~~l~~la~---g- 302 (357)
T 2fna_A 234 VVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKL-------ILKEFENFLHGREIARKRYLNIMRTLSK---C- 302 (357)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-------HHHHHHHHHTTCGGGHHHHHHHHHHHTT---C-
T ss_pred HHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHH-------HHHHHHHHhhccccccHHHHHHHHHHHc---C-
Confidence 89999999999999998776432 3333321 11111111 111111 111 1688999999999998 2
Q ss_pred eeCHHHHHHHHH-HcCccccCCCCCHHHHHHHHHHHHHhcccccccccCCCcEeEEE-EcHhHHHHH
Q 037627 442 EINVQTLIRLLV-AEGFIQQDTDRSTEEVAGEILDELINRSLIQIDKRCWGRIATCR-VHDLLRDLA 506 (858)
Q Consensus 442 ~i~~~~l~~~w~-aeg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~-~H~lir~~~ 506 (858)
. +...+..... ..|. .........+++.|++.++|.... ..|+ .|++++++.
T Consensus 303 ~-~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~------~~y~f~~~~~~~~l 356 (357)
T 2fna_A 303 G-KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEG------EKYCPSEPLISLAF 356 (357)
T ss_dssp B-CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS------SCEEESSHHHHHHT
T ss_pred C-CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC------CEEEecCHHHHHhh
Confidence 1 4455443221 1120 012344678899999999997643 2355 489998874
No 82
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.70 E-value=2.1e-16 Score=174.74 Aligned_cols=311 Identities=14% Similarity=0.063 Sum_probs=183.6
Q ss_pred cCCceeeccccHHHHHHHH-hcC--C--CCcEEEEE--EecCcchHHHHHHHHhcCccccC-----Cc-ceEEEEEeCCC
Q 037627 174 IEGNVVGFDDDVSKLLAKL-LNK--E--PRRFVISV--YGMGGLGKTTLARKLYHNNDVKN-----KF-DRCAWVSVSQD 240 (858)
Q Consensus 174 ~~~~~vGr~~~~~~l~~~L-~~~--~--~~~~vv~I--~G~~GiGKTtLa~~~~~~~~~~~-----~f-~~~~wv~~~~~ 240 (858)
.++.|+||+.+++++.+.+ ... + ...+.+.| +|++|+||||||+++++. ... .+ ..++|+++...
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 97 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVNAFNA 97 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEEGGGC
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEEECCCC
Confidence 4578999999999999988 421 1 24567777 999999999999999973 322 12 23678887777
Q ss_pred CCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHHhc--CceEEEEEEcCCCh--------hhHHHHHhhCCCC---
Q 037627 241 YDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQ--GKSYLVVVDDAWQK--------ETWESLKRAFPDN--- 307 (858)
Q Consensus 241 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDd~~~~--------~~~~~l~~~l~~~--- 307 (858)
.+...++..++..++...+. ...+...+...+.+.+. +++++|||||++.. +.+..+...+...
T Consensus 98 ~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~ 174 (412)
T 1w5s_A 98 PNLYTILSLIVRQTGYPIQV---RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR 174 (412)
T ss_dssp CSHHHHHHHHHHHHTCCCCC---TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT
T ss_pred CCHHHHHHHHHHHhCCCCCC---CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccC
Confidence 78889999999988654321 11223445555555553 67999999999753 2333333322211
Q ss_pred C--CCcEEEEEeCchhHHhhc--------CCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcC----
Q 037627 308 K--NGSRVIITTRIKEVAERS--------DENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCR---- 373 (858)
Q Consensus 308 ~--~gs~ilvTtR~~~~~~~~--------~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~---- 373 (858)
. .+..+|+||+...+.... ......+.+.+++.++++++|...+..........++....|++.++
T Consensus 175 ~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 254 (412)
T 1w5s_A 175 DGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKG 254 (412)
T ss_dssp TSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGT
T ss_pred CCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhcc
Confidence 2 455688888765432111 11113499999999999999976543111111112466788999999
Q ss_pred --CChHHHHHHHhHhc------CC---ChHHHHHHHHHHHhhhhcCccch-hhHHHhhhccCcHHHHHHHhHhcCCC--C
Q 037627 374 --GLPLAIVVLGGLLS------MK---KPQEWRRVRDHLWQHLKNDCIHI-SSLLNLSFRNLSHELKLCFLYLGLFP--E 439 (858)
Q Consensus 374 --G~Plai~~~~~~l~------~~---~~~~w~~~~~~l~~~~~~~~~~i-~~~l~~s~~~L~~~~k~~f~~la~fp--~ 439 (858)
|+|..+..++.... .. +...+....... . ...+.-++..||++.+.++..++.+. .
T Consensus 255 ~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~----------~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~ 324 (412)
T 1w5s_A 255 GDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN----------EAASIQTHELEALSIHELIILRLIAEATLGG 324 (412)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC----------------CCSSSSSCHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH----------hccchHHHHHHcCCHHHHHHHHHHHHHHhcC
Confidence 99976655543221 11 122232222111 1 23455567889999999999888643 2
Q ss_pred CceeCHHHHHHHHHHc--CccccCCCCCHHHHHHHHHHHHHhcccccccccCCCcEeEEEEcHh
Q 037627 440 DFEINVQTLIRLLVAE--GFIQQDTDRSTEEVAGEILDELINRSLIQIDKRCWGRIATCRVHDL 501 (858)
Q Consensus 440 ~~~i~~~~l~~~w~ae--g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~H~l 501 (858)
+..+....+...+... ... ... .........+++.|+..++|.......++...|++|.+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l 386 (412)
T 1w5s_A 325 MEWINAGLLRQRYEDASLTMY-NVK-PRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRL 386 (412)
T ss_dssp CSSBCHHHHHHHHHHHHHHHS-CCC-CCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEE
T ss_pred CCCccHHHHHHHHHHHHHhhc-CCC-CCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEe
Confidence 2345555554443211 001 001 11234467889999999999765422233334544444
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=2.1e-16 Score=163.49 Aligned_cols=197 Identities=21% Similarity=0.240 Sum_probs=151.1
Q ss_pred ccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhccccccccccccccccCCCCCccccccceeeccccc
Q 037627 591 NLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGNFTGTLNIENLSNLQTLKYVERGSWA 670 (858)
Q Consensus 591 ~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 670 (858)
++++++++++.++.+|..+. ++|++|++++|.+ ..+|.. .+.++++|++|++++|....
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l-~~~~~~------------------~~~~l~~L~~L~l~~n~l~~ 75 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKL-SSLPSK------------------AFHRLTKLRLLYLNDNKLQT 75 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCC-SCCCTT------------------SSSSCTTCCEEECCSSCCSC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCC-CeeCHH------------------HhcCCCCCCEEECCCCccCe
Confidence 57899999999999998765 6899999999954 444321 24556677777777777544
Q ss_pred ccC--cccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhh
Q 037627 671 EIN--PEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLH 747 (858)
Q Consensus 671 ~~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~ 747 (858)
... +..+++|+.|++.+|......+ ..+..+++|+.|++++|.+..+ ....+..+++|++|++++| +..+|...+
T Consensus 76 i~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 153 (270)
T 2o6q_A 76 LPAGIFKELKNLETLWVTDNKLQALPI-GVFDQLVNLAELRLDRNQLKSL-PPRVFDSLTKLTYLSLGYNELQSLPKGVF 153 (270)
T ss_dssp CCTTTTSSCTTCCEEECCSSCCCCCCT-TTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred eChhhhcCCCCCCEEECCCCcCCcCCH-hHcccccCCCEEECCCCccCee-CHHHhCcCcCCCEEECCCCcCCccCHhHc
Confidence 332 4678899999999988665555 7788899999999998877665 3445778899999999986 777777655
Q ss_pred hccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECCCCccccceeeecCCC
Q 037627 748 EVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLN 811 (858)
Q Consensus 748 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~ 811 (858)
..+++|+.|+|++|.++..++..|.++++|+.|+|++|.++... ......+++|+.|++.+++
T Consensus 154 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP-EGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred cCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC-HHHhccccCCCEEEecCCC
Confidence 44799999999999998877778889999999999999887532 1123457888888888754
No 84
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.66 E-value=1.4e-19 Score=203.64 Aligned_cols=103 Identities=17% Similarity=0.067 Sum_probs=57.3
Q ss_pred CCccEEEEecccCCCC----CccccCCCCCCCeeEeeccccCCceEEEC----CCCccccceeeecCCCCCC-----eEE
Q 037627 751 PNLECLSLKKSHLKED----PMPKLEKLPNLTILDLGLKSYGGKKMICT----TKGFHLLEILQLIDLNDLA-----QWQ 817 (858)
Q Consensus 751 ~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~~~~~~~~~~----~~~~~~L~~L~l~~~~~l~-----~~~ 817 (858)
++|+.|+|++|.+++. .+..+..+++|+.|+|++|.+++...... ....++|++|++++|. +. .++
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~ 391 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLA 391 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHH
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHH
Confidence 4666666666666543 23445566777777777776654321100 0124577777777753 44 233
Q ss_pred EccCccccccceeecccccCC----------CCcccCCCCCCceecCC
Q 037627 818 VEDGAMPILRGLRVTNAYKLK----------IPERLKSIPLPTEWECD 855 (858)
Q Consensus 818 ~~~~~l~~L~~L~l~~c~~L~----------lp~~l~~L~~L~~~~c~ 855 (858)
.....+++|+.|++++|+ ++ +|.....|+.|.+.++.
T Consensus 392 ~~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 392 ATLLANHSLRELDLSNNC-LGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp HHHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred HHHHhCCCccEEECCCCC-CCHHHHHHHHHHhccCCcchhheeecccc
Confidence 333456778888888774 32 23333446655555544
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.66 E-value=5.2e-16 Score=163.63 Aligned_cols=192 Identities=20% Similarity=0.212 Sum_probs=141.5
Q ss_pred CCeeEEEEEecccCCCCCCCCCCCCccccccCCeeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCc
Q 037627 528 SSCRRQAVHFRIMGDWGLGHCNPRSSSLLLFNQRVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPS 607 (858)
Q Consensus 528 ~~~r~l~~~~~~~~~~~~~~~~~~lr~l~~~~~r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~ 607 (858)
...+++.+..+....++. ...+..| ++|++++|. +. .++. +..+++|++|++++|.++.+|
T Consensus 41 ~~L~~L~l~~~~i~~l~~---~~~l~~L-----~~L~L~~n~-------i~--~~~~-~~~l~~L~~L~L~~n~l~~~~- 101 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIEG---VQYLNNL-----IGLELKDNQ-------IT--DLAP-LKNLTKITELELSGNPLKNVS- 101 (308)
T ss_dssp HTCCEEECTTSCCCCCTT---GGGCTTC-----CEEECCSSC-------CC--CCGG-GTTCCSCCEEECCSCCCSCCG-
T ss_pred CCcCEEEeeCCCccCchh---hhccCCC-----CEEEccCCc-------CC--CChh-HccCCCCCEEEccCCcCCCch-
Confidence 457778776554444432 2223333 899999998 77 7777 999999999999999999986
Q ss_pred ccccCCCCcEEeccccccccccchhhhccccccccccccccccCCCCCccccccceeecccccccCcccccCCCeeEEee
Q 037627 608 CIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGNFTGTLNIENLSNLQTLKYVERGSWAEINPEKLVNLRDLRIIS 687 (858)
Q Consensus 608 ~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~ 687 (858)
.+.++++|++|++++|. +..+|. + ..+++|+.|++++|.......+..+++|+.|++.+
T Consensus 102 ~~~~l~~L~~L~l~~n~-l~~~~~-l-------------------~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~ 160 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQ-ITDVTP-L-------------------AGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGN 160 (308)
T ss_dssp GGTTCTTCCEEECTTSC-CCCCGG-G-------------------TTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCS
T ss_pred hhcCCCCCCEEECCCCC-CCCchh-h-------------------cCCCCCCEEECCCCccCcCccccCCCCccEEEccC
Confidence 69999999999999994 444443 3 44566667777777765555567778888888888
Q ss_pred cccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCC
Q 037627 688 KYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKED 766 (858)
Q Consensus 688 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~ 766 (858)
|..... + .+..+++|+.|++++|.+..+ +.+..+++|+.|++++| +..++. +.. +++|+.|+|++|.+++.
T Consensus 161 n~l~~~-~--~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~~~-l~~-l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 161 AQVSDL-T--PLANLSKLTTLKADDNKISDI---SPLASLPNLIEVHLKNNQISDVSP-LAN-TSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp SCCCCC-G--GGTTCTTCCEEECCSSCCCCC---GGGGGCTTCCEEECTTSCCCBCGG-GTT-CTTCCEEEEEEEEEECC
T ss_pred CcCCCC-h--hhcCCCCCCEEECCCCccCcC---hhhcCCCCCCEEEccCCccCcccc-ccC-CCCCCEEEccCCeeecC
Confidence 765442 2 277888899999988876644 33777888999999986 555653 544 79999999999988754
Q ss_pred C
Q 037627 767 P 767 (858)
Q Consensus 767 ~ 767 (858)
+
T Consensus 233 ~ 233 (308)
T 1h6u_A 233 P 233 (308)
T ss_dssp C
T ss_pred C
Confidence 3
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=3.2e-16 Score=159.02 Aligned_cols=191 Identities=14% Similarity=0.134 Sum_probs=147.7
Q ss_pred eeeeccCCccccccccCCCCCccc-cccCCcccceEeccCCc-ccccCc-ccccCCCCcEEeccc-cccccccchhhhcc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPE-EMVKLVNLKYLRLTNAH-IDVIPS-CIAKLQRLQTLDISG-NMAFMELPREICEL 636 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~L~~n~-i~~lp~-~l~~l~~L~~L~L~~-n~~~~~lp~~~~~l 636 (858)
++|++++|. ++ .+|. .|..+++|++|++++|. ++.+|. .|.++++|++|++++ | .+..+|..
T Consensus 34 ~~L~l~~n~-------l~--~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~~---- 99 (239)
T 2xwt_C 34 QTLKLIETH-------LR--TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDPD---- 99 (239)
T ss_dssp CEEEEESCC-------CS--EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECTT----
T ss_pred cEEEEeCCc-------ce--EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCHH----
Confidence 889999998 77 7775 68999999999999997 998875 689999999999998 7 44444431
Q ss_pred ccccccccccccccCCCCCccccccceeecccccccCcccccCCC---eeEEeec-ccccccchhhhhcCCCCC-eEEee
Q 037627 637 KELRHLIGNFTGTLNIENLSNLQTLKYVERGSWAEINPEKLVNLR---DLRIISK-YQEEEFSFKSIAYLKNLQ-LLSIR 711 (858)
Q Consensus 637 ~~L~~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~l~~l~~L~-~L~l~ 711 (858)
.+.++++|+.|++++|.......+..+++|+ .|++.+| ......+ ..+..+++|+ .|+++
T Consensus 100 --------------~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 100 --------------ALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLY 164 (239)
T ss_dssp --------------SEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECC
T ss_pred --------------HhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcC
Confidence 2445667777777777765555566677777 8889888 5544444 6788999999 99999
Q ss_pred ccCCccccCCCCCCCCCCccEEEeccc--CCCCChhhhhcc-CCccEEEEecccCCCCCccccCCCCCCCeeEeecc
Q 037627 712 LSDDTCFDSLQPLSDCSYLIDLRLSGK--IEKLPEDLHEVL-PNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLK 785 (858)
Q Consensus 712 ~~~~~~~~~~~~l~~l~~L~~L~l~~~--~~~~p~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 785 (858)
+|.+..++ ...+.. ++|+.|++++| +..+|...+..+ ++|+.|+|++|.++..++. .+++|+.|+++++
T Consensus 165 ~n~l~~i~-~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 165 NNGFTSVQ-GYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp SCCCCEEC-TTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCcccC-HhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 98877553 233444 79999999997 777777666557 8999999999999865443 6889999999854
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.65 E-value=4.6e-16 Score=161.69 Aligned_cols=204 Identities=17% Similarity=0.170 Sum_probs=146.4
Q ss_pred cCCCeeEEEEEecccCCCCCCCCCCCCccccccCCeeeeccCCccccccccCCCCCccc-cccCCcccceEeccCCcccc
Q 037627 526 ISSSCRRQAVHFRIMGDWGLGHCNPRSSSLLLFNQRVLNFEGVVSNVLCSVGGCYNLPE-EMVKLVNLKYLRLTNAHIDV 604 (858)
Q Consensus 526 ~~~~~r~l~~~~~~~~~~~~~~~~~~lr~l~~~~~r~L~L~~~~~~~~~~~~~~~~lp~-~~~~l~~L~~L~L~~n~i~~ 604 (858)
.+...+++.+..+.....+. ..+.++..| ++|++++|. +. .++. .|.++++|++|++++|.++.
T Consensus 26 l~~~l~~L~ls~n~l~~~~~-~~~~~l~~L-----~~L~l~~n~-------l~--~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGS-YSFFSFPEL-----QVLDLSRCE-------IQ--TIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp SCTTCCEEECTTCCCCEECT-TTTTTCTTC-----SEEECTTCC-------CC--EECTTTTTTCTTCCEEECTTCCCCE
T ss_pred CCCCccEEECCCCcccccCH-hHhccccCC-----cEEECCCCc-------CC--ccCHHHccCCcCCCEEECCCCccCc
Confidence 44567888887555554432 133444444 899999998 66 6654 68999999999999999998
Q ss_pred cC-cccccCCCCcEEeccccccccccchhhhccccccccccccccccCCCCCccccccceeeccccc---ccCcccccCC
Q 037627 605 IP-SCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGNFTGTLNIENLSNLQTLKYVERGSWA---EINPEKLVNL 680 (858)
Q Consensus 605 lp-~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~---~~~~~~l~~L 680 (858)
++ ..+.++++|++|++++|.+....+.. ++.+++|++|++++|.... ...+..+++|
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------------------~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L 151 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETNLASLENFP-------------------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCC-------------------CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred cChhhhcCCccccEEECCCCCccccCchh-------------------cccCCCCCEEECcCCccceecCchhhccCCCC
Confidence 75 66899999999999999544332222 4556677777777776543 2345677888
Q ss_pred CeeEEeecccccccchhhhhcCCCCC----eEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccE
Q 037627 681 RDLRIISKYQEEEFSFKSIAYLKNLQ----LLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLEC 755 (858)
Q Consensus 681 ~~L~l~~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~ 755 (858)
+.|++++|......+ ..+..+++|+ .|++++|.+..++ +......+|+.|++++| +..+|..++..+++|+.
T Consensus 152 ~~L~Ls~N~l~~~~~-~~~~~l~~L~~l~l~L~ls~n~l~~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 228 (276)
T 2z62_A 152 EHLDLSSNKIQSIYC-TDLRVLHQMPLLNLSLDLSLNPMNFIQ--PGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQK 228 (276)
T ss_dssp CEEECCSSCCCEECG-GGGHHHHTCTTCCEEEECCSSCCCEEC--TTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCE
T ss_pred CEEECCCCCCCcCCH-HHhhhhhhccccceeeecCCCcccccC--ccccCCCcccEEECCCCceeecCHhHhcccccccE
Confidence 888888887665544 5666666666 7888888776542 22233448999999986 77888876655899999
Q ss_pred EEEecccCCCC
Q 037627 756 LSLKKSHLKED 766 (858)
Q Consensus 756 L~L~~n~l~~~ 766 (858)
|+|++|.+++.
T Consensus 229 L~l~~N~~~c~ 239 (276)
T 2z62_A 229 IWLHTNPWDCS 239 (276)
T ss_dssp EECCSSCBCCC
T ss_pred EEccCCccccc
Confidence 99999998743
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=2.5e-16 Score=166.54 Aligned_cols=220 Identities=14% Similarity=0.088 Sum_probs=139.9
Q ss_pred ccceEeccCCccc-----ccCcccccCCCCcEEeccccccccccchhhhccccccccccccccccCCCCCccccccceee
Q 037627 591 NLKYLRLTNAHID-----VIPSCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGNFTGTLNIENLSNLQTLKYVE 665 (858)
Q Consensus 591 ~L~~L~L~~n~i~-----~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~~ 665 (858)
.++.|.+.++.++ .++. +..+++|++|++++|.+.+..|..+.. ..+++|++|++++
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~-----------------~~~~~L~~L~Ls~ 126 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLE-----------------ATGLALSSLRLRN 126 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSS-----------------CCCBCCSSCEEES
T ss_pred ceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhh-----------------ccCCCCCEEEeec
Confidence 3555555555443 1111 223455666666666555444443200 3444555555555
Q ss_pred cccccc------cCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCcc---ccCCCCCCCCCCccEEEec
Q 037627 666 RGSWAE------INPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTC---FDSLQPLSDCSYLIDLRLS 736 (858)
Q Consensus 666 ~~~~~~------~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---~~~~~~l~~l~~L~~L~l~ 736 (858)
|..... ..+..+++|+.|++++|......+ ..+..+++|+.|++++|.... ......+..+++|++|+++
T Consensus 127 n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls 205 (310)
T 4glp_A 127 VSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSC-EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR 205 (310)
T ss_dssp CCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCT-TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC
T ss_pred ccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhH-HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECC
Confidence 553321 112246677777777776655555 677788888888888876533 1112334567788888888
Q ss_pred cc-CCCCChh---hhhccCCccEEEEecccCCCCCccccCCC---CCCCeeEeeccccCCceEEECCCCccccceeeecC
Q 037627 737 GK-IEKLPED---LHEVLPNLECLSLKKSHLKEDPMPKLEKL---PNLTILDLGLKSYGGKKMICTTKGFHLLEILQLID 809 (858)
Q Consensus 737 ~~-~~~~p~~---~~~~l~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~ 809 (858)
+| +..+|.. +...+++|++|+|++|.+++..|..+..+ ++|++|+|++|.++.. ....+++|+.|++++
T Consensus 206 ~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l----p~~~~~~L~~L~Ls~ 281 (310)
T 4glp_A 206 NTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV----PKGLPAKLRVLDLSS 281 (310)
T ss_dssp SSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC----CSCCCSCCSCEECCS
T ss_pred CCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch----hhhhcCCCCEEECCC
Confidence 86 5444432 33336999999999999988777777666 7999999999998742 223357999999997
Q ss_pred CCCCCeEEEccCccccccceeecccc
Q 037627 810 LNDLAQWQVEDGAMPILRGLRVTNAY 835 (858)
Q Consensus 810 ~~~l~~~~~~~~~l~~L~~L~l~~c~ 835 (858)
+ .++.++. ...+++|+.|++++|+
T Consensus 282 N-~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 282 N-RLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp C-CCCSCCC-TTSCCCCSCEECSSTT
T ss_pred C-cCCCCch-hhhCCCccEEECcCCC
Confidence 4 5666654 5678999999999885
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=1.5e-17 Score=178.48 Aligned_cols=247 Identities=19% Similarity=0.156 Sum_probs=141.3
Q ss_pred eeeeccCCccccccccCCCCCccccccCC--cccceEeccCCcccccCcccccCCCCcEEeccccccccc-cchhhhccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKL--VNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFME-LPREICELK 637 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l--~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~-lp~~~~~l~ 637 (858)
+.++++++. +. |..+..+ +++++|++++|.++..+..+.++++|++|++++|.+... +|..+..++
T Consensus 50 ~~l~l~~~~-------~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~ 118 (336)
T 2ast_B 50 QTLDLTGKN-------LH----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCS 118 (336)
T ss_dssp SEEECTTCB-------CC----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBC
T ss_pred eeecccccc-------CC----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCC
Confidence 556666665 32 4445555 677777777777776655666777777777777744333 444444444
Q ss_pred cccccccccccccCCCCCccccccceeeccccc--ccCcccccCCCeeEEeecc-ccc-ccchhhhhcCCCCCeEEeecc
Q 037627 638 ELRHLIGNFTGTLNIENLSNLQTLKYVERGSWA--EINPEKLVNLRDLRIISKY-QEE-EFSFKSIAYLKNLQLLSIRLS 713 (858)
Q Consensus 638 ~L~~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~l~~l~~L~~L~l~~~ 713 (858)
+|++| ++++|.... ...+..+++|++|++.+|. ... .++ ..+..+++|+.|++++|
T Consensus 119 ~L~~L-------------------~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~-~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 119 KLQNL-------------------SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ-TLLSSCSRLDELNLSWC 178 (336)
T ss_dssp CCSEE-------------------ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHH-HHHHHCTTCCEEECCCC
T ss_pred CCCEE-------------------eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHH-HHHhcCCCCCEEcCCCC
Confidence 44444 333332111 1112234455555555552 222 122 44556666666666666
Q ss_pred -CCccccCCCCCCCCC-CccEEEecccC-----CCCChhhhhccCCccEEEEeccc-CCCCCccccCCCCCCCeeEeecc
Q 037627 714 -DDTCFDSLQPLSDCS-YLIDLRLSGKI-----EKLPEDLHEVLPNLECLSLKKSH-LKEDPMPKLEKLPNLTILDLGLK 785 (858)
Q Consensus 714 -~~~~~~~~~~l~~l~-~L~~L~l~~~~-----~~~p~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n 785 (858)
..........+..++ +|++|+++++- ..+|..+.. +++|+.|+|++|. +++..+..+..+++|+.|+|++|
T Consensus 179 ~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 179 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR-CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp TTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH-CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh-CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 443211112234455 67777776642 223444444 6899999999988 66667778888899999999888
Q ss_pred c-cCCceEEECCCCccccceeeecCCCCCCeEEEccCcc-ccccceeecccccCC--CCcccCC
Q 037627 786 S-YGGKKMICTTKGFHLLEILQLIDLNDLAQWQVEDGAM-PILRGLRVTNAYKLK--IPERLKS 845 (858)
Q Consensus 786 ~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l-~~L~~L~l~~c~~L~--lp~~l~~ 845 (858)
. +....+ .....+++|+.|++.+| +.... ...+ .+|+.|++++| .++ .|..+.+
T Consensus 258 ~~~~~~~~-~~l~~~~~L~~L~l~~~--i~~~~--~~~l~~~l~~L~l~~n-~l~~~~~~~~~~ 315 (336)
T 2ast_B 258 YDIIPETL-LELGEIPTLKTLQVFGI--VPDGT--LQLLKEALPHLQINCS-HFTTIARPTIGN 315 (336)
T ss_dssp TTCCGGGG-GGGGGCTTCCEEECTTS--SCTTC--HHHHHHHSTTSEESCC-CSCCTTCSSCSS
T ss_pred CCCCHHHH-HHHhcCCCCCEEeccCc--cCHHH--HHHHHhhCcceEEecc-cCccccCCcccc
Confidence 4 322211 12345888999999886 22211 1123 34778888766 455 6665554
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.63 E-value=2.2e-15 Score=153.98 Aligned_cols=175 Identities=18% Similarity=0.236 Sum_probs=111.0
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccC-cccccCCCCcEEeccccccccccchhhhccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIP-SCIAKLQRLQTLDISGNMAFMELPREICELKEL 639 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L 639 (858)
+.++++++. +. .+|..+. ++|++|+|++|.++.++ ..+.++++|++|+|++|.+.+..|..
T Consensus 17 ~~l~~~~~~-------l~--~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------- 78 (251)
T 3m19_A 17 KEVDCQGKS-------LD--SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV------- 78 (251)
T ss_dssp TEEECTTCC-------CS--SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT-------
T ss_pred eEEecCCCC-------cc--ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhH-------
Confidence 445555555 44 5555444 46666666666666553 24556666666666666333222221
Q ss_pred cccccccccccCCCCCccccccceeecccccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCcccc
Q 037627 640 RHLIGNFTGTLNIENLSNLQTLKYVERGSWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFD 719 (858)
Q Consensus 640 ~~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 719 (858)
+..+++|++|++++| ......+ ..+..+++|+.|++++|.+..+
T Consensus 79 ------------~~~l~~L~~L~L~~n----------------------~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~- 122 (251)
T 3m19_A 79 ------------FDDLTELGTLGLANN----------------------QLASLPL-GVFDHLTQLDKLYLGGNQLKSL- 122 (251)
T ss_dssp ------------TTTCTTCCEEECTTS----------------------CCCCCCT-TTTTTCTTCCEEECCSSCCCCC-
T ss_pred ------------hccCCcCCEEECCCC----------------------cccccCh-hHhcccCCCCEEEcCCCcCCCc-
Confidence 233344444444444 3333333 5666778888888887766644
Q ss_pred CCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCC
Q 037627 720 SLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGG 789 (858)
Q Consensus 720 ~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 789 (858)
....+..+++|+.|++++| +..+|...+..+++|+.|+|++|.+++.++..+..+++|+.|+|++|.+..
T Consensus 123 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 123 PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred ChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 2334667788888888885 666776444337899999999999988777788889999999999998865
No 91
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.62 E-value=1.7e-18 Score=194.90 Aligned_cols=268 Identities=15% Similarity=0.098 Sum_probs=182.1
Q ss_pred eeeeccCCccccccccCCCC---CccccccCCcccceEeccCCccccc-Cccc-ccCC----CCcEEecccccccc----
Q 037627 561 RVLNFEGVVSNVLCSVGGCY---NLPEEMVKLVNLKYLRLTNAHIDVI-PSCI-AKLQ----RLQTLDISGNMAFM---- 627 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~---~lp~~~~~l~~L~~L~L~~n~i~~l-p~~l-~~l~----~L~~L~L~~n~~~~---- 627 (858)
++|+|++|. +... .++..+..+++|++|+|++|.++.. +..+ ..++ +|++|++++|.+..
T Consensus 31 ~~L~L~~~~-------l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 31 QVVRLDDCG-------LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp SEEEEESSC-------CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred cEEEccCCC-------CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 788888888 5421 4567788899999999999998742 3233 2344 79999999996552
Q ss_pred ccchhhhcccccccccc---cccc--ccC-----CCCCccccccceeecccccc------cCcccccCCCeeEEeecccc
Q 037627 628 ELPREICELKELRHLIG---NFTG--TLN-----IENLSNLQTLKYVERGSWAE------INPEKLVNLRDLRIISKYQE 691 (858)
Q Consensus 628 ~lp~~~~~l~~L~~L~~---~~~~--~~~-----~~~l~~L~~L~l~~~~~~~~------~~~~~l~~L~~L~l~~~~~~ 691 (858)
.+|..+..+++|++|+. .+.. +.. ....++|++|++++|..... ..+..+++|++|++++|...
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 56888889999999942 2221 111 23356899999999875442 22446789999999998754
Q ss_pred cccchhhhh-----cCCCCCeEEeeccCCcccc---CCCCCCCCCCccEEEeccc-CCC-----CChhhhhccCCccEEE
Q 037627 692 EEFSFKSIA-----YLKNLQLLSIRLSDDTCFD---SLQPLSDCSYLIDLRLSGK-IEK-----LPEDLHEVLPNLECLS 757 (858)
Q Consensus 692 ~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~---~~~~l~~l~~L~~L~l~~~-~~~-----~p~~~~~~l~~L~~L~ 757 (858)
.... ..+. ..++|+.|++++|.....+ ....+..+++|++|++++| +.. ++..+...+++|++|+
T Consensus 184 ~~~~-~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~ 262 (461)
T 1z7x_W 184 EAGV-RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262 (461)
T ss_dssp HHHH-HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred hHHH-HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEE
Confidence 4333 3332 3669999999988665421 1223456789999999986 322 1222322368999999
Q ss_pred EecccCCCC----CccccCCCCCCCeeEeeccccCCceEEE----CCCCccccceeeecCCCCCCeE-----EEccCccc
Q 037627 758 LKKSHLKED----PMPKLEKLPNLTILDLGLKSYGGKKMIC----TTKGFHLLEILQLIDLNDLAQW-----QVEDGAMP 824 (858)
Q Consensus 758 L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~~~~~~~~~----~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~l~ 824 (858)
|++|.++.. .+..+..+++|+.|+|++|.+.+..... .....++|+.|++++|. +... +.....++
T Consensus 263 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~ 341 (461)
T 1z7x_W 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNR 341 (461)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCS
T ss_pred CcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCC
Confidence 999998754 4566778999999999999875432110 11234699999999875 4432 22233568
Q ss_pred cccceeecccccCC
Q 037627 825 ILRGLRVTNAYKLK 838 (858)
Q Consensus 825 ~L~~L~l~~c~~L~ 838 (858)
+|+.|++++| .++
T Consensus 342 ~L~~L~Ls~n-~i~ 354 (461)
T 1z7x_W 342 FLLELQISNN-RLE 354 (461)
T ss_dssp SCCEEECCSS-BCH
T ss_pred CccEEEccCC-ccc
Confidence 9999999999 454
No 92
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.62 E-value=1.9e-15 Score=157.61 Aligned_cols=195 Identities=23% Similarity=0.199 Sum_probs=152.3
Q ss_pred cccCCCCcEEeccccccccccchhhhccccccccc---ccccc--ccCCCCCccccccceeecccccccCcccccCCCee
Q 037627 609 IAKLQRLQTLDISGNMAFMELPREICELKELRHLI---GNFTG--TLNIENLSNLQTLKYVERGSWAEINPEKLVNLRDL 683 (858)
Q Consensus 609 l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~---~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L 683 (858)
+.++++|+++++++| .+..+|..+. ++++.|+ +.+.. +..+..+++|+.|++++|..........+++|+.|
T Consensus 6 ~~~l~~l~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTS-CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEE
T ss_pred ccccCCccEEECCCC-CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEE
Confidence 678899999999999 5667887654 5777773 34433 23688899999999999987766666788999999
Q ss_pred EEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEeccc
Q 037627 684 RIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSH 762 (858)
Q Consensus 684 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~ 762 (858)
++++|... .++ ..+..+++|+.|++++|.+..+ ....+..+++|+.|++++| +..+|...+..+++|+.|+|++|+
T Consensus 83 ~Ls~N~l~-~l~-~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 83 DLSHNQLQ-SLP-LLGQTLPALTVLDVSFNRLTSL-PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp ECCSSCCS-SCC-CCTTTCTTCCEEECCSSCCCCC-CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred ECCCCcCC-cCc-hhhccCCCCCEEECCCCcCccc-CHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 99988765 445 5678889999999999887755 3355788889999999986 777777766557899999999999
Q ss_pred CCCCCccccCCCCCCCeeEeeccccCCceEEECCCCccccceeeecCCC
Q 037627 763 LKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLN 811 (858)
Q Consensus 763 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~ 811 (858)
++..++..+..+++|+.|+|++|.++. ++.....+++|+.|++.+++
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~~--ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCCCSEEECCSCC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCCc--cChhhcccccCCeEEeCCCC
Confidence 987777778889999999999998874 23334456678888888754
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=1.4e-15 Score=163.60 Aligned_cols=242 Identities=15% Similarity=0.117 Sum_probs=172.3
Q ss_pred ccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhccccccccccccccccCCCCCccccccceee
Q 037627 586 MVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGNFTGTLNIENLSNLQTLKYVE 665 (858)
Q Consensus 586 ~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~~ 665 (858)
++.|. -++++.++++++++|..+ .+++++|+|++| .+..+|.. .|.++++|++|++++
T Consensus 6 ~C~C~-~~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N-~i~~i~~~------------------~f~~l~~L~~L~Ls~ 63 (350)
T 4ay9_X 6 ICHCS-NRVFLCQESKVTEIPSDL--PRNAIELRFVLT-KLRVIQKG------------------AFSGFGDLEKIEISQ 63 (350)
T ss_dssp SSEEE-TTEEEEESTTCCSCCTTC--CTTCSEEEEESC-CCSEECTT------------------SSTTCTTCCEEEEEC
T ss_pred ccEee-CCEEEecCCCCCccCcCc--CCCCCEEEccCC-cCCCcCHH------------------HHcCCCCCCEEECcC
Confidence 34443 367888999999999877 368999999999 55566642 256677888889999
Q ss_pred ccccccc---CcccccCCCeeEEee-cccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEecc--cC
Q 037627 666 RGSWAEI---NPEKLVNLRDLRIIS-KYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSG--KI 739 (858)
Q Consensus 666 ~~~~~~~---~~~~l~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~--~~ 739 (858)
|...... .+..++++.++.... |......+ ..+..+++|+.|++++|.+...+.. .+....++..|++.+ ++
T Consensus 64 N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~-~~f~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~l~~l~l~~~~~i 141 (350)
T 4ay9_X 64 NDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP-EAFQNLPNLQYLLISNTGIKHLPDV-HKIHSLQKVLLDIQDNINI 141 (350)
T ss_dssp CTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT-TSBCCCTTCCEEEEEEECCSSCCCC-TTCCBSSCEEEEEESCTTC
T ss_pred CCCCCccChhHhhcchhhhhhhcccCCcccccCc-hhhhhccccccccccccccccCCch-hhcccchhhhhhhcccccc
Confidence 8854433 245667777655544 44444444 8899999999999999987765322 233445677888876 36
Q ss_pred CCCChhhh-hccCCccEEEEecccCCCCCccccCCCCCCCeeEeec-cccCCceEEECCCCccccceeeecCCCCCCeEE
Q 037627 740 EKLPEDLH-EVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGL-KSYGGKKMICTTKGFHLLEILQLIDLNDLAQWQ 817 (858)
Q Consensus 740 ~~~p~~~~-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 817 (858)
..+|...+ .....++.|+|++|+++...+. ....++|+.|++++ |.++... ......+++|+.|+++++ .++.++
T Consensus 142 ~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~-~f~~~~L~~l~l~~~n~l~~i~-~~~f~~l~~L~~LdLs~N-~l~~lp 218 (350)
T 4ay9_X 142 HTIERNSFVGLSFESVILWLNKNGIQEIHNS-AFNGTQLDELNLSDNNNLEELP-NDVFHGASGPVILDISRT-RIHSLP 218 (350)
T ss_dssp CEECTTSSTTSBSSCEEEECCSSCCCEECTT-SSTTEEEEEEECTTCTTCCCCC-TTTTTTEECCSEEECTTS-CCCCCC
T ss_pred ccccccchhhcchhhhhhccccccccCCChh-hccccchhHHhhccCCcccCCC-HHHhccCcccchhhcCCC-CcCccC
Confidence 66665433 3235799999999999755444 44567899999985 5554321 112357899999999984 577765
Q ss_pred EccCccccccceeecccccCC-CCcccCCCCCCceecCCCC
Q 037627 818 VEDGAMPILRGLRVTNAYKLK-IPERLKSIPLPTEWECDEN 857 (858)
Q Consensus 818 ~~~~~l~~L~~L~l~~c~~L~-lp~~l~~L~~L~~~~c~~N 857 (858)
.+.|.+|+.|.+.+|.+++ +|. +..|+.|..+..+.+
T Consensus 219 --~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 219 --SYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp --SSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred --hhhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 3568899999999999999 884 777788777776554
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=161.28 Aligned_cols=196 Identities=19% Similarity=0.169 Sum_probs=109.4
Q ss_pred CcccceEeccCCccc-ccCccc--ccCCCCcEEeccccccccccc----hhhhccccccccc---ccccc--ccCCCCCc
Q 037627 589 LVNLKYLRLTNAHID-VIPSCI--AKLQRLQTLDISGNMAFMELP----REICELKELRHLI---GNFTG--TLNIENLS 656 (858)
Q Consensus 589 l~~L~~L~L~~n~i~-~lp~~l--~~l~~L~~L~L~~n~~~~~lp----~~~~~l~~L~~L~---~~~~~--~~~~~~l~ 656 (858)
+++|++|++++|.+. ..|..+ .++++|++|++++|.+.+..| ..+..+++|++|+ +.+.. +..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 456777777777776 445555 677777777777775554333 2233455555552 22221 12455666
Q ss_pred cccccceeeccccc------ccCcccccCCCeeEEeecccccc--cchhhhhcCCCCCeEEeeccCCcccc--CCCCCCC
Q 037627 657 NLQTLKYVERGSWA------EINPEKLVNLRDLRIISKYQEEE--FSFKSIAYLKNLQLLSIRLSDDTCFD--SLQPLSD 726 (858)
Q Consensus 657 ~L~~L~l~~~~~~~------~~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~l~~ 726 (858)
+|++|++++|.... ...+..+++|+.|++++|..... .+...+..+++|+.|++++|.+.... .+..+..
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 66777776665322 11124566677777766654321 11012456677777777777655431 1122222
Q ss_pred CCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCC
Q 037627 727 CSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGG 789 (858)
Q Consensus 727 l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 789 (858)
+++|++|++++| +..+|..+ +++|+.|+|++|++++.+ .+..+++|+.|+|++|.++.
T Consensus 250 ~~~L~~L~Ls~N~l~~lp~~~---~~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 250 SSALNSLNLSFAGLEQVPKGL---PAKLRVLDLSSNRLNRAP--QPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CTTCCCEECCSSCCCSCCSCC---CSCCSCEECCSCCCCSCC--CTTSCCCCSCEECSSTTTSC
T ss_pred cCcCCEEECCCCCCCchhhhh---cCCCCEEECCCCcCCCCc--hhhhCCCccEEECcCCCCCC
Confidence 356677777664 55566554 256677777777665431 24566666677776666653
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.61 E-value=1.2e-17 Score=182.83 Aligned_cols=241 Identities=16% Similarity=0.098 Sum_probs=130.7
Q ss_pred CccccccCCcccceEeccCCcccc-----cCcccccCCCCcEEeccccc---cccccchhhhccccccccccccccccCC
Q 037627 581 NLPEEMVKLVNLKYLRLTNAHIDV-----IPSCIAKLQRLQTLDISGNM---AFMELPREICELKELRHLIGNFTGTLNI 652 (858)
Q Consensus 581 ~lp~~~~~l~~L~~L~L~~n~i~~-----lp~~l~~l~~L~~L~L~~n~---~~~~lp~~~~~l~~L~~L~~~~~~~~~~ 652 (858)
.++..+..+++|++|+|++|.++. ++..+.++++|++|+|++|. +.+.+|..+..+. ..+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~------------~~l 90 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL------------QAL 90 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHH------------HHH
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHH------------HHH
Confidence 566777888888888888888773 44456788888888888862 2334455442211 123
Q ss_pred CCCccccccceeecccccc------cCcccccCCCeeEEeecccccccc---hhhhhcC---------CCCCeEEeeccC
Q 037627 653 ENLSNLQTLKYVERGSWAE------INPEKLVNLRDLRIISKYQEEEFS---FKSIAYL---------KNLQLLSIRLSD 714 (858)
Q Consensus 653 ~~l~~L~~L~l~~~~~~~~------~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~l---------~~L~~L~l~~~~ 714 (858)
..+++|++|++++|..... ..+..+++|+.|++++|......+ ...+..+ ++|+.|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 3455556666665553321 123455666666666665432211 0223333 666666666665
Q ss_pred CccccCC---CCCCCCCCccEEEeccc-CC------CCChhhhhccCCccEEEEecccCC----CCCccccCCCCCCCee
Q 037627 715 DTCFDSL---QPLSDCSYLIDLRLSGK-IE------KLPEDLHEVLPNLECLSLKKSHLK----EDPMPKLEKLPNLTIL 780 (858)
Q Consensus 715 ~~~~~~~---~~l~~l~~L~~L~l~~~-~~------~~p~~~~~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L 780 (858)
+...... ..+..+++|++|++++| +. -.|..+.. +++|+.|+|++|.++ ..++..+..+++|+.|
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~-~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY-CQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG-CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc-CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 4322111 12344556666666664 22 01113333 466777777776664 3345556666777777
Q ss_pred EeeccccCCceEE---EC--CCCccccceeeecCCCCCCe-----EEEcc-Cccccccceeecccc
Q 037627 781 DLGLKSYGGKKMI---CT--TKGFHLLEILQLIDLNDLAQ-----WQVED-GAMPILRGLRVTNAY 835 (858)
Q Consensus 781 ~L~~n~~~~~~~~---~~--~~~~~~L~~L~l~~~~~l~~-----~~~~~-~~l~~L~~L~l~~c~ 835 (858)
+|++|.+++.... .. ...+++|+.|++++|. +.. ++... ..+|+|+.|++++|+
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 7776666542110 00 1235667777776643 433 33222 345777777777764
No 96
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.60 E-value=3.2e-17 Score=190.72 Aligned_cols=85 Identities=16% Similarity=0.185 Sum_probs=45.8
Q ss_pred cCCccEEEEeccc--CCCCCccccC-CCCCCCeeEeeccccCCceEEECCCCccccceeeecCCCCCCeE--EEccCccc
Q 037627 750 LPNLECLSLKKSH--LKEDPMPKLE-KLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLNDLAQW--QVEDGAMP 824 (858)
Q Consensus 750 l~~L~~L~L~~n~--l~~~~~~~l~-~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~l~ 824 (858)
+++|+.|+|++|. +++..+..+. .+++|+.|+|++|.+++..+......+++|++|++++|+ ++.. +.....++
T Consensus 435 ~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~ 513 (592)
T 3ogk_B 435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLP 513 (592)
T ss_dssp CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCS
T ss_pred CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcC
Confidence 5666666665433 3333333332 366677777776666543322223456677777777665 4321 11123467
Q ss_pred cccceeecccc
Q 037627 825 ILRGLRVTNAY 835 (858)
Q Consensus 825 ~L~~L~l~~c~ 835 (858)
+|+.|++++|+
T Consensus 514 ~L~~L~ls~n~ 524 (592)
T 3ogk_B 514 SLRYLWVQGYR 524 (592)
T ss_dssp SCCEEEEESCB
T ss_pred ccCeeECcCCc
Confidence 77777777775
No 97
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.56 E-value=1.1e-13 Score=151.43 Aligned_cols=294 Identities=13% Similarity=0.081 Sum_probs=181.9
Q ss_pred cCCceeeccccHHHHHHHHhcC--CCCcEEEEEEecCcchHHHHHHHHhcCccccCC------cceEEEEEeCCCCCHHH
Q 037627 174 IEGNVVGFDDDVSKLLAKLLNK--EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNK------FDRCAWVSVSQDYDTKD 245 (858)
Q Consensus 174 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~------f~~~~wv~~~~~~~~~~ 245 (858)
.++.|+||+.+++++..++... ....+.+.|+|++|+||||+|+.+++. .... -...+|+++....+...
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~ 94 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYR 94 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHH
Confidence 4478999999999999988543 345678999999999999999999973 3211 13467888888888889
Q ss_pred HHHHHHHhccccccchhhhhccHHHHHHHHHHHh--cCceEEEEEEcCCChhh----HHHH---HhhCCCC--CCCcEEE
Q 037627 246 LLLRIIRSFKINVLTRELEEMREEDLERYLHNCL--QGKSYLVVVDDAWQKET----WESL---KRAFPDN--KNGSRVI 314 (858)
Q Consensus 246 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDd~~~~~~----~~~l---~~~l~~~--~~gs~il 314 (858)
++..++..++...+. .......+...+.+.+ .+++.+|||||++.... .+.+ ....... ..+..+|
T Consensus 95 ~~~~l~~~l~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I 171 (387)
T 2v1u_A 95 VASAIAEAVGVRVPF---TGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLV 171 (387)
T ss_dssp HHHHHHHHHSCCCCS---SCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEE
T ss_pred HHHHHHHHhCCCCCC---CCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEE
Confidence 999999988654321 1222445555556555 35689999999986532 2222 2222211 3456788
Q ss_pred EEeCchhHHhh------cCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcC---CChHHH-HHHHh
Q 037627 315 ITTRIKEVAER------SDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCR---GLPLAI-VVLGG 384 (858)
Q Consensus 315 vTtR~~~~~~~------~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~---G~Plai-~~~~~ 384 (858)
+||+....... .......+.+.+++.++..+++...+..........++..+.|++.++ |.|..+ ..+..
T Consensus 172 ~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~ 251 (387)
T 2v1u_A 172 GITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRV 251 (387)
T ss_dssp EECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred EEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 88876532111 011114789999999999999998754210011111345677888887 999433 33222
Q ss_pred Hh---c----CC-ChHHHHHHHHHHHhhhhcCccchhhHHHhhhccCcHHHHHHHhHhc-CCCCCceeCHHHHHHHHHH-
Q 037627 385 LL---S----MK-KPQEWRRVRDHLWQHLKNDCIHISSLLNLSFRNLSHELKLCFLYLG-LFPEDFEINVQTLIRLLVA- 454 (858)
Q Consensus 385 ~l---~----~~-~~~~w~~~~~~l~~~~~~~~~~i~~~l~~s~~~L~~~~k~~f~~la-~fp~~~~i~~~~l~~~w~a- 454 (858)
+. . .. +.+.+..+++... ...+.-++..|+++.+..+..++ .+.+...+....+.+....
T Consensus 252 a~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 252 AGEIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 21 1 11 4555555554432 12355678899999888887776 4433234555544443311
Q ss_pred ---cCccccCCCCCHHHHHHHHHHHHHhcccccccc
Q 037627 455 ---EGFIQQDTDRSTEEVAGEILDELINRSLIQIDK 487 (858)
Q Consensus 455 ---eg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~ 487 (858)
.| . .......+..+++.|...|+++...
T Consensus 322 ~~~~~-~----~~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 322 TSTLG-L----EHVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHTT-C----CCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhcC-C----CCCCHHHHHHHHHHHHhCCCeEEEe
Confidence 12 1 1222455778999999999998754
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.55 E-value=8.4e-15 Score=152.91 Aligned_cols=172 Identities=23% Similarity=0.241 Sum_probs=94.3
Q ss_pred cCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhccccccccccccccccCCCCCccccccceeec
Q 037627 587 VKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGNFTGTLNIENLSNLQTLKYVER 666 (858)
Q Consensus 587 ~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~~~ 666 (858)
..+++|++|++++|.++.+| .+..+++|++|++++|. +..++. +..+ ++|+.|++++|
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-l~~l-------------------~~L~~L~l~~n 100 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LANL-------------------KNLGWLFLDEN 100 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTC-------------------TTCCEEECCSS
T ss_pred hhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCc-cCCCcc-cccC-------------------CCCCEEECCCC
Confidence 44556666666666666554 35566666666666663 222322 3332 33333333333
Q ss_pred ccccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChh
Q 037627 667 GSWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPED 745 (858)
Q Consensus 667 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~ 745 (858)
.......+..+++|+.|++.+|..... ..+..+++|+.|++++|.+..+ +.+..+++|+.|++++| +..++.
T Consensus 101 ~l~~~~~l~~l~~L~~L~L~~n~i~~~---~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~~~- 173 (291)
T 1h6t_A 101 KVKDLSSLKDLKKLKSLSLEHNGISDI---NGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP- 173 (291)
T ss_dssp CCCCGGGGTTCTTCCEEECTTSCCCCC---GGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred cCCCChhhccCCCCCEEECCCCcCCCC---hhhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCccccchh-
Confidence 333333334444444555444443321 3455566666666666655432 44556666777777664 444544
Q ss_pred hhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCc
Q 037627 746 LHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGK 790 (858)
Q Consensus 746 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~ 790 (858)
+.. +++|+.|+|++|.++.. +.+..+++|+.|++++|.+...
T Consensus 174 l~~-l~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 174 LAG-LTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp GTT-CTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEECC
T ss_pred hcC-CCccCEEECCCCcCCCC--hhhccCCCCCEEECcCCcccCC
Confidence 444 57777777777777643 3477777777777777776543
No 99
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.55 E-value=1.5e-16 Score=185.04 Aligned_cols=269 Identities=14% Similarity=0.071 Sum_probs=146.4
Q ss_pred ccccccCCcccceEeccCCccc-----ccCcccccCCCCcEEeccccccccccchhhhccccccccccc-c---------
Q 037627 582 LPEEMVKLVNLKYLRLTNAHID-----VIPSCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGN-F--------- 646 (858)
Q Consensus 582 lp~~~~~l~~L~~L~L~~n~i~-----~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~-~--------- 646 (858)
++..+..+++|++|++++|.++ .++..+.++++|++|++++| ....+|..+..+++|++|... +
T Consensus 184 l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 262 (592)
T 3ogk_B 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEK 262 (592)
T ss_dssp HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTS
T ss_pred HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHH
Confidence 3334455667777777766664 33444456677777777776 333455666666666666221 1
Q ss_pred ---------------------ccccCCCCCccccccceeecccccccC---cccccCCCeeEEeecccccccchhhhhcC
Q 037627 647 ---------------------TGTLNIENLSNLQTLKYVERGSWAEIN---PEKLVNLRDLRIISKYQEEEFSFKSIAYL 702 (858)
Q Consensus 647 ---------------------~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~l~~l 702 (858)
..+..+..+++|++|++++|....... +..+++|+.|++.++.....++ .....+
T Consensus 263 ~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~-~~~~~~ 341 (592)
T 3ogk_B 263 YMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLE-VLAQYC 341 (592)
T ss_dssp SSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHH-HHHHHC
T ss_pred HHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHH-HHHHhC
Confidence 011123445566666666665221111 2456666666666332222222 344566
Q ss_pred CCCCeEEeec-----------cCCccccCCCC-CCCCCCccEEEeccc-CCC-CChhhhhccCCccEEEEe----cccCC
Q 037627 703 KNLQLLSIRL-----------SDDTCFDSLQP-LSDCSYLIDLRLSGK-IEK-LPEDLHEVLPNLECLSLK----KSHLK 764 (858)
Q Consensus 703 ~~L~~L~l~~-----------~~~~~~~~~~~-l~~l~~L~~L~l~~~-~~~-~p~~~~~~l~~L~~L~L~----~n~l~ 764 (858)
++|+.|++++ +..... .+.. ...+++|++|+++.+ +.. .+..+...+++|+.|+|+ .|.++
T Consensus 342 ~~L~~L~L~~g~~~~~~~~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~ 420 (592)
T 3ogk_B 342 KQLKRLRIERGADEQGMEDEEGLVSQR-GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT 420 (592)
T ss_dssp TTCCEEEEECCCCSSTTSSTTCCCCHH-HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCS
T ss_pred CCCCEEEeecCccccccccccCccCHH-HHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcccc
Confidence 7777777773 222111 1111 234677777777543 321 223344436778888886 44555
Q ss_pred CC-----CccccCCCCCCCeeEeeccc--cCCceEEECCCCccccceeeecCCCCCCeE--EEccCccccccceeecccc
Q 037627 765 ED-----PMPKLEKLPNLTILDLGLKS--YGGKKMICTTKGFHLLEILQLIDLNDLAQW--QVEDGAMPILRGLRVTNAY 835 (858)
Q Consensus 765 ~~-----~~~~l~~l~~L~~L~L~~n~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~l~~L~~L~l~~c~ 835 (858)
+. .+..+.++++|+.|+|++|. +++..+......+++|+.|++++|. ++.. +.....+++|+.|++++|+
T Consensus 421 ~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 421 DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred CchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC
Confidence 43 22235567888888886433 4332221112347788888888754 4432 2223567999999999997
Q ss_pred cCC---CCc---ccCCCCCCceecCC
Q 037627 836 KLK---IPE---RLKSIPLPTEWECD 855 (858)
Q Consensus 836 ~L~---lp~---~l~~L~~L~~~~c~ 855 (858)
++ ++. .+++|+.|.+.+|.
T Consensus 500 -l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 500 -FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp -CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred -CcHHHHHHHHHhcCccCeeECcCCc
Confidence 55 444 45666666665553
No 100
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.54 E-value=1.5e-15 Score=162.88 Aligned_cols=73 Identities=15% Similarity=0.182 Sum_probs=55.9
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccc--cCcccccCCCCcEEeccccccccccchhhhcccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDV--IPSCIAKLQRLQTLDISGNMAFMELPREICELKE 638 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~--lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~ 638 (858)
++|+++++. +. ..+..+..+++|++|++++|.++. +|..+.++++|++|++++|.+....|..+..+++
T Consensus 73 ~~L~l~~n~-------l~--~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~ 143 (336)
T 2ast_B 73 IAFRCPRSF-------MD--QPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSN 143 (336)
T ss_dssp SEEECTTCE-------EC--SCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTT
T ss_pred eEEEcCCcc-------cc--ccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCC
Confidence 778888887 55 555567788999999999998873 7777888999999999998666566666666666
Q ss_pred cccc
Q 037627 639 LRHL 642 (858)
Q Consensus 639 L~~L 642 (858)
|++|
T Consensus 144 L~~L 147 (336)
T 2ast_B 144 LVRL 147 (336)
T ss_dssp CSEE
T ss_pred CCEE
Confidence 6655
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.54 E-value=3.6e-14 Score=144.87 Aligned_cols=154 Identities=18% Similarity=0.245 Sum_probs=100.4
Q ss_pred eeeeccCCccccccccCCCCCcc-ccccCCcccceEeccCCcccccCc-ccccCCCCcEEeccccccccccchhhhcccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLP-EEMVKLVNLKYLRLTNAHIDVIPS-CIAKLQRLQTLDISGNMAFMELPREICELKE 638 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp-~~~~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~ 638 (858)
+.|+|++|. +. .++ ..|.++++|++|+|++|.++.++. .+.++++|++|++++|.+. .+|..
T Consensus 38 ~~L~L~~n~-------l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~------ 101 (251)
T 3m19_A 38 EKLDLQSTG-------LA--TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLG------ 101 (251)
T ss_dssp CEEECTTSC-------CC--CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTT------
T ss_pred CEEEccCCC-------cC--ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc-ccChh------
Confidence 889999998 66 554 468999999999999999998754 4789999999999999543 44321
Q ss_pred ccccccccccccCCCCCccccccceeecccccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccc
Q 037627 639 LRHLIGNFTGTLNIENLSNLQTLKYVERGSWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCF 718 (858)
Q Consensus 639 L~~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 718 (858)
.+..+++|++|++++|....... ..+..+++|+.|++++|.+..+
T Consensus 102 ------------~~~~l~~L~~L~L~~N~l~~~~~-----------------------~~~~~l~~L~~L~Ls~N~l~~~ 146 (251)
T 3m19_A 102 ------------VFDHLTQLDKLYLGGNQLKSLPS-----------------------GVFDRLTKLKELRLNTNQLQSI 146 (251)
T ss_dssp ------------TTTTCTTCCEEECCSSCCCCCCT-----------------------TTTTTCTTCCEEECCSSCCCCC
T ss_pred ------------HhcccCCCCEEEcCCCcCCCcCh-----------------------hHhccCCcccEEECcCCcCCcc
Confidence 23455666666666665433221 3344555666666665554433
Q ss_pred cCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCC
Q 037627 719 DSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKED 766 (858)
Q Consensus 719 ~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~ 766 (858)
....+..+++|+.|+|++| +..+|...+..+++|+.|+|++|.+.+.
T Consensus 147 -~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 147 -PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp -CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred -CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 1223555566666666664 4455543333357777777777776543
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.54 E-value=1.2e-14 Score=166.42 Aligned_cols=168 Identities=23% Similarity=0.273 Sum_probs=82.5
Q ss_pred ccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhccccccccc---cccccccCCCCCccccccc
Q 037627 586 MVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELRHLI---GNFTGTLNIENLSNLQTLK 662 (858)
Q Consensus 586 ~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~---~~~~~~~~~~~l~~L~~L~ 662 (858)
+..+.+|++|++++|.+..+| .+..+++|+.|+|++|. +..+|. +..+++|+.|+ +.+..+..+..+++|+.|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ 115 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLS 115 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEE
Confidence 455667777777777777665 46677777777777773 333333 44444444441 1222222344455555555
Q ss_pred eeecccccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCC
Q 037627 663 YVERGSWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEK 741 (858)
Q Consensus 663 l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~ 741 (858)
+++|.......+.. +++|+.|+|++|.+..+ ..+..+++|+.|+|++| +..
T Consensus 116 Ls~N~l~~l~~l~~-------------------------l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 116 LEHNGISDINGLVH-------------------------LPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CTTSCCCCCGGGGG-------------------------CTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCC
T ss_pred ecCCCCCCCccccC-------------------------CCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCC
Confidence 55554433333444 44444444444433322 23344444455554443 333
Q ss_pred CChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccC
Q 037627 742 LPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYG 788 (858)
Q Consensus 742 ~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 788 (858)
+++ +.. +++|+.|+|++|.+++. +.+..+++|+.|+|++|.+.
T Consensus 168 ~~~-l~~-l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 168 IVP-LAG-LTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CGG-GTT-CTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred chh-hcc-CCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 332 222 45555555555554432 23455555555555555443
No 103
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.54 E-value=9e-14 Score=151.99 Aligned_cols=294 Identities=11% Similarity=0.023 Sum_probs=179.6
Q ss_pred CCceeeccccHHHHHHHHhc--CCCCcEEEEEEecCcchHHHHHHHHhcCcccc----CC--cceEEEEEeCCCC-CHHH
Q 037627 175 EGNVVGFDDDVSKLLAKLLN--KEPRRFVISVYGMGGLGKTTLARKLYHNNDVK----NK--FDRCAWVSVSQDY-DTKD 245 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~----~~--f~~~~wv~~~~~~-~~~~ 245 (858)
++.|+||+.+++++..++.. .....+.+.|+|++|+||||||+.+++..... .. ...++|+++.... +...
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 98 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQA 98 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHH
Confidence 37799999999999988764 23345689999999999999999999732111 01 2356788877666 7888
Q ss_pred HHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChhh---HHH-HHhhCCCCCCCcEEEEEeCchh
Q 037627 246 LLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKET---WES-LKRAFPDNKNGSRVIITTRIKE 321 (858)
Q Consensus 246 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~---~~~-l~~~l~~~~~gs~ilvTtR~~~ 321 (858)
++..++..+.....+ ........+...+.+.+..++.+|||||++.... .+. +...+... .+..+|+||+...
T Consensus 99 ~~~~l~~~l~~~~~~--~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~ 175 (384)
T 2qby_B 99 VLSSLAGKLTGFSVP--KHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHHCSCCC--SSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTT
T ss_pred HHHHHHHHhcCCCCC--CCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCc
Confidence 888888877322111 1112234556667777776666999999976431 222 22222222 5788999998753
Q ss_pred HHhhc-----CCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcC---CChH-HHHHHHhHh--c---
Q 037627 322 VAERS-----DENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCR---GLPL-AIVVLGGLL--S--- 387 (858)
Q Consensus 322 ~~~~~-----~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~---G~Pl-ai~~~~~~l--~--- 387 (858)
..... ......+.+.+++.++..+++...+..........++..+.|++.++ |.|. ++..+-... .
T Consensus 176 ~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~ 255 (384)
T 2qby_B 176 VRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGG 255 (384)
T ss_dssp TTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSS
T ss_pred hHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCC
Confidence 21110 01114899999999999999998764211111111345677778887 9887 444333222 1
Q ss_pred CC-ChHHHHHHHHHHHhhhhcCccchhhHHHhhhccCcHHHHHHHhHhcCCCCCceeCHHHHHHHHHHcCccccCCCCCH
Q 037627 388 MK-KPQEWRRVRDHLWQHLKNDCIHISSLLNLSFRNLSHELKLCFLYLGLFPEDFEINVQTLIRLLVAEGFIQQDTDRST 466 (858)
Q Consensus 388 ~~-~~~~w~~~~~~l~~~~~~~~~~i~~~l~~s~~~L~~~~k~~f~~la~fp~~~~i~~~~l~~~w~aeg~i~~~~~~~~ 466 (858)
.. +.+.+..+++.... ..+..+++.|+++.+..+..++....+-.+. +.........| . ....
T Consensus 256 ~~i~~~~v~~~~~~~~~----------~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~----~~~~ 319 (384)
T 2qby_B 256 GIIRKEHVDKAIVDYEQ----------ERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-Q----KPLS 319 (384)
T ss_dssp SCCCHHHHHHHHHHHHH----------HHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-C----CCCC
T ss_pred CccCHHHHHHHHHHHhc----------chHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-C----CCCC
Confidence 12 56666666554421 3456678899999998888887611100111 11112221222 1 1123
Q ss_pred HHHHHHHHHHHHhcccccccc
Q 037627 467 EEVAGEILDELINRSLIQIDK 487 (858)
Q Consensus 467 ~~~~~~~l~~L~~~~ll~~~~ 487 (858)
.....+++..|..+|+++...
T Consensus 320 ~~~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 320 YRRFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEe
Confidence 345778899999999998754
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.53 E-value=1.9e-15 Score=163.47 Aligned_cols=229 Identities=12% Similarity=0.103 Sum_probs=140.0
Q ss_pred ccccccCCcccceEeccCCcccccC-----cccccCC-CCcEEeccccccccccchhhhcc-----ccccccc---cccc
Q 037627 582 LPEEMVKLVNLKYLRLTNAHIDVIP-----SCIAKLQ-RLQTLDISGNMAFMELPREICEL-----KELRHLI---GNFT 647 (858)
Q Consensus 582 lp~~~~~l~~L~~L~L~~n~i~~lp-----~~l~~l~-~L~~L~L~~n~~~~~lp~~~~~l-----~~L~~L~---~~~~ 647 (858)
+|..+...++|++|+|++|.++..+ ..+.+++ +|++|+|++|.+....+..+..+ ++|++|+ +.+.
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 3444444555777777777777665 4556666 77777777775555545555554 6677663 2222
Q ss_pred ccc------CCCCC-ccccccceeecccccccC------ccc-ccCCCeeEEeecccccc----cchhhhhcCC-CCCeE
Q 037627 648 GTL------NIENL-SNLQTLKYVERGSWAEIN------PEK-LVNLRDLRIISKYQEEE----FSFKSIAYLK-NLQLL 708 (858)
Q Consensus 648 ~~~------~~~~l-~~L~~L~l~~~~~~~~~~------~~~-l~~L~~L~l~~~~~~~~----~~~~~l~~l~-~L~~L 708 (858)
... .+..+ ++|++|++++|....... +.. .++|++|++++|..... +. ..+..++ +|+.|
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~-~~l~~~~~~L~~L 172 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI-QILAAIPANVNSL 172 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH-HHHHTSCTTCCEE
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH-HHHhcCCccccEe
Confidence 111 13344 788888888887543322 122 25888888888875532 22 4445555 88889
Q ss_pred EeeccCCccccC---CCCCCCC-CCccEEEeccc-CCC-----CChhhhhccCCccEEEEecccCCCCCc----cccCCC
Q 037627 709 SIRLSDDTCFDS---LQPLSDC-SYLIDLRLSGK-IEK-----LPEDLHEVLPNLECLSLKKSHLKEDPM----PKLEKL 774 (858)
Q Consensus 709 ~l~~~~~~~~~~---~~~l~~l-~~L~~L~l~~~-~~~-----~p~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l 774 (858)
++++|.+..... ...+..+ ++|+.|+|++| ++. ++..+....++|+.|+|++|.++...+ ..+..+
T Consensus 173 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l 252 (362)
T 3goz_A 173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTT
T ss_pred eecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcC
Confidence 888886654311 0123334 48888998886 444 455555534589999999998876554 335677
Q ss_pred CCCCeeEeeccccCCce------EEECCCCccccceeeecCCC
Q 037627 775 PNLTILDLGLKSYGGKK------MICTTKGFHLLEILQLIDLN 811 (858)
Q Consensus 775 ~~L~~L~L~~n~~~~~~------~~~~~~~~~~L~~L~l~~~~ 811 (858)
++|+.|+|++|.+.... +......+++|+.|+++++.
T Consensus 253 ~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 253 KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 88999999888744321 11122356677777777643
No 105
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.53 E-value=1e-16 Score=182.57 Aligned_cols=187 Identities=18% Similarity=0.183 Sum_probs=105.9
Q ss_pred cCCcccceEeccCCcccccCcccccCCCCcEEeccccc-------------cccccchhhhccccccccccccccccCCC
Q 037627 587 VKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNM-------------AFMELPREICELKELRHLIGNFTGTLNIE 653 (858)
Q Consensus 587 ~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~-------------~~~~lp~~~~~l~~L~~L~~~~~~~~~~~ 653 (858)
..+++|+.|+|++|.++.+|..|+++++|+.|++++|. ..+..|..++.+++|+.|+.. ...
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l-----~~n 420 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-----RAA 420 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG-----GHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcch-----hhc
Confidence 67889999999999999999999999999999998773 233344444455554444200 001
Q ss_pred CCccccccceeecccccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEE
Q 037627 654 NLSNLQTLKYVERGSWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDL 733 (858)
Q Consensus 654 ~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 733 (858)
.+.+|..+.+.+|...... ...|+.|++++|.... +| . ++.+++|+.|++++|.+..+ +..+..+++|+.|
T Consensus 421 ~~~~L~~l~l~~n~i~~l~----~~~L~~L~Ls~n~l~~-lp-~-~~~l~~L~~L~Ls~N~l~~l--p~~~~~l~~L~~L 491 (567)
T 1dce_A 421 YLDDLRSKFLLENSVLKME----YADVRVLHLAHKDLTV-LC-H-LEQLLLVTHLDLSHNRLRAL--PPALAALRCLEVL 491 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HTTCSEEECTTSCCSS-CC-C-GGGGTTCCEEECCSSCCCCC--CGGGGGCTTCCEE
T ss_pred ccchhhhhhhhcccccccC----ccCceEEEecCCCCCC-Cc-C-ccccccCcEeecCccccccc--chhhhcCCCCCEE
Confidence 1223333333333322211 1135556665554433 23 2 55566666666665555432 2245555566666
Q ss_pred Eeccc-CCCCChhhhhccCCccEEEEecccCCCCC-ccccCCCCCCCeeEeeccccCC
Q 037627 734 RLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDP-MPKLEKLPNLTILDLGLKSYGG 789 (858)
Q Consensus 734 ~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~~~~ 789 (858)
+|++| +..+| .+.. +++|+.|+|++|.+++.. |..++.+++|+.|+|++|.+++
T Consensus 492 ~Ls~N~l~~lp-~l~~-l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 492 QASDNALENVD-GVAN-LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp ECCSSCCCCCG-GGTT-CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred ECCCCCCCCCc-ccCC-CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 66654 44454 4444 466666666666665544 5556666666666666665543
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.52 E-value=1.1e-14 Score=164.64 Aligned_cols=175 Identities=17% Similarity=0.168 Sum_probs=102.4
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhcccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELR 640 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~ 640 (858)
++|+|++|. ++ .+|..+. ++|++|+|++|.++.+| ..+++|++|++++|.+ ..+|. +..
T Consensus 62 ~~L~Ls~n~-------L~--~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l-~~ip~-l~~----- 120 (571)
T 3cvr_A 62 SELQLNRLN-------LS--SLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRL-STLPE-LPA----- 120 (571)
T ss_dssp SEEECCSSC-------CS--CCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCC-SCCCC-CCT-----
T ss_pred cEEEeCCCC-------CC--ccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCC-CCcch-hhc-----
Confidence 778888887 76 6777663 68888888888888888 4578888888888844 33665 432
Q ss_pred ccccccccccCCCCCccccccceeecccccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccC
Q 037627 641 HLIGNFTGTLNIENLSNLQTLKYVERGSWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDS 720 (858)
Q Consensus 641 ~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 720 (858)
+|+.|++++|....... .+++|+.|++++|.... ++ . .+++|+.|++++|.+..++.
T Consensus 121 ----------------~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~-lp-~---~l~~L~~L~Ls~N~L~~lp~ 177 (571)
T 3cvr_A 121 ----------------SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTM-LP-E---LPTSLEVLSVRNNQLTFLPE 177 (571)
T ss_dssp ----------------TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSC-CC-C---CCTTCCEEECCSSCCSCCCC
T ss_pred ----------------CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCc-CC-C---cCCCcCEEECCCCCCCCcch
Confidence 44444445444333222 44555555555554433 22 1 34556666666655544322
Q ss_pred CCCCCCCCCccEEEeccc-CCCCChhhhhccCCc-------cEEEEecccCCCCCccccCCCCCCCeeEeeccccCC
Q 037627 721 LQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNL-------ECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGG 789 (858)
Q Consensus 721 ~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L-------~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 789 (858)
+. ++|+.|+|++| +..+|. +. .+| +.|+|++|.|+ .+|..+..+++|+.|+|++|.+++
T Consensus 178 ---l~--~~L~~L~Ls~N~L~~lp~-~~---~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 178 ---LP--ESLEALDVSTNLLESLPA-VP---VRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp ---CC--TTCCEEECCSSCCSSCCC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred ---hh--CCCCEEECcCCCCCchhh-HH---HhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCC
Confidence 22 56666666664 444554 21 244 66666666665 344455556666666666666654
No 107
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.52 E-value=7e-13 Score=145.19 Aligned_cols=294 Identities=15% Similarity=0.139 Sum_probs=184.1
Q ss_pred cCCceeeccccHHHHHHHHhcC----CCCcEEEEEEecCcchHHHHHHHHhcCccccCC-cceEEEEEeCCCCCHHHHHH
Q 037627 174 IEGNVVGFDDDVSKLLAKLLNK----EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNK-FDRCAWVSVSQDYDTKDLLL 248 (858)
Q Consensus 174 ~~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~ 248 (858)
.++.++||+.+++++..++... .+..+.+.|+|++|+||||||+.++. ..... -..++|+++....+...++.
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~i~~~~~~~~~~~~~ 92 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYINGFIYRNFTAIIG 92 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCCSHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHH--HHhhhcCeeEEEEeCccCCCHHHHHH
Confidence 3477999999999999988652 22234899999999999999999997 33332 13467888777778888999
Q ss_pred HHHHhccccccchhhhhccHHHHHHHHHHHhc--CceEEEEEEcCCCh--hhHHHHHhhCCCCC----CCcEEEEEeCch
Q 037627 249 RIIRSFKINVLTRELEEMREEDLERYLHNCLQ--GKSYLVVVDDAWQK--ETWESLKRAFPDNK----NGSRVIITTRIK 320 (858)
Q Consensus 249 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDd~~~~--~~~~~l~~~l~~~~----~gs~ilvTtR~~ 320 (858)
.++..++...+. .......+...+...+. +++.+||+|+++.. .....+...+.... .+..+|++|+..
T Consensus 93 ~l~~~l~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 93 EIARSLNIPFPR---RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHHHHTTCCCCS---SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHHHHhCccCCC---CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 999888654321 11233444455555443 56899999999764 44556666554322 366788888766
Q ss_pred hHHhhcCC------CCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHc---------CCChHHHHHHHhH
Q 037627 321 EVAERSDE------NAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKC---------RGLPLAIVVLGGL 385 (858)
Q Consensus 321 ~~~~~~~~------~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~---------~G~Plai~~~~~~ 385 (858)
........ ....+.+.+++.++..+++...+..........++....|++.+ +|.|..+..+...
T Consensus 170 ~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~ 249 (389)
T 1fnn_A 170 AVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYR 249 (389)
T ss_dssp HHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHH
T ss_pred hHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHH
Confidence 43332211 11369999999999999998876431111112246678889998 7988655444332
Q ss_pred hc------CC---ChHHHHHHHHHHHhhhhcCccchhhHHHhhhccCcHHHHHHHhHhcCCC---CCceeCHHHHHHHHH
Q 037627 386 LS------MK---KPQEWRRVRDHLWQHLKNDCIHISSLLNLSFRNLSHELKLCFLYLGLFP---EDFEINVQTLIRLLV 453 (858)
Q Consensus 386 l~------~~---~~~~w~~~~~~l~~~~~~~~~~i~~~l~~s~~~L~~~~k~~f~~la~fp---~~~~i~~~~l~~~w~ 453 (858)
.. +. +.+.......... ...+.-.+..|+.+.+.++..++.+. .+..+....+...+.
T Consensus 250 a~~~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~ 319 (389)
T 1fnn_A 250 SAYAAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYK 319 (389)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHH
Confidence 21 11 2222222222211 12234456788888888888777543 221455566655442
Q ss_pred H----cCccccCCCCCHHHHHHHHHHHHHhcccccccc
Q 037627 454 A----EGFIQQDTDRSTEEVAGEILDELINRSLIQIDK 487 (858)
Q Consensus 454 a----eg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~ 487 (858)
. .|. . .........++++|...++|....
T Consensus 320 ~~~~~~~~----~-~~~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 320 IVCEEYGE----R-PRVHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HHHHHTTC----C-CCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHcCC----C-CCCHHHHHHHHHHHHhCCCeEEee
Confidence 2 121 1 112345778899999999998754
No 108
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.51 E-value=5.1e-16 Score=169.89 Aligned_cols=222 Identities=17% Similarity=0.217 Sum_probs=115.4
Q ss_pred eeeeccCCccccccccCCCC---CccccccCCcccceEeccCCccc----ccCccc-------ccCCCCcEEeccccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCY---NLPEEMVKLVNLKYLRLTNAHID----VIPSCI-------AKLQRLQTLDISGNMAF 626 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~---~lp~~~~~l~~L~~L~L~~n~i~----~lp~~l-------~~l~~L~~L~L~~n~~~ 626 (858)
++|+|++|. ++.. .++..+..+++|++|+|++|.+. .+|..+ .++++|++|+|++|.+.
T Consensus 35 ~~L~L~~n~-------i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 35 KEIVLSGNT-------IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp CEEECTTSE-------ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred cEEECCCCC-------CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 788999887 5411 14455778999999999997655 334444 68899999999999655
Q ss_pred c----ccchhhhcccccccccc---cccc--ccC----CCCC---------ccccccceeecccccc--c----Cccccc
Q 037627 627 M----ELPREICELKELRHLIG---NFTG--TLN----IENL---------SNLQTLKYVERGSWAE--I----NPEKLV 678 (858)
Q Consensus 627 ~----~lp~~~~~l~~L~~L~~---~~~~--~~~----~~~l---------~~L~~L~l~~~~~~~~--~----~~~~l~ 678 (858)
. .+|..+..+++|++|+. .+.. +.. +..+ ++|++|++++|..... . .+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 5 36777777777777722 2210 111 1222 5566666655553211 1 122445
Q ss_pred CCCeeEEeecccccc----cchhhhhcCCCCCeEEeeccCCccc---cCCCCCCCCCCccEEEeccc-CCC-----CChh
Q 037627 679 NLRDLRIISKYQEEE----FSFKSIAYLKNLQLLSIRLSDDTCF---DSLQPLSDCSYLIDLRLSGK-IEK-----LPED 745 (858)
Q Consensus 679 ~L~~L~l~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~---~~~~~l~~l~~L~~L~l~~~-~~~-----~p~~ 745 (858)
+|+.|++.+|..... +....+..+++|+.|+|++|.+... .....+..+++|+.|+|++| +.. +|..
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 267 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence 555555555543311 1102444555555555555543210 01122344455555555554 221 1222
Q ss_pred hhh-ccCCccEEEEecccCCC----CCcccc-CCCCCCCeeEeeccccCC
Q 037627 746 LHE-VLPNLECLSLKKSHLKE----DPMPKL-EKLPNLTILDLGLKSYGG 789 (858)
Q Consensus 746 ~~~-~l~~L~~L~L~~n~l~~----~~~~~l-~~l~~L~~L~L~~n~~~~ 789 (858)
+.. .+++|+.|+|++|.++. ..|..+ .++++|+.|+|++|.+++
T Consensus 268 l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 211 03555555555555543 133333 345555555555555543
No 109
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.50 E-value=1.5e-13 Score=150.41 Aligned_cols=295 Identities=15% Similarity=0.138 Sum_probs=177.4
Q ss_pred CcCCceeeccccHHHHHHHHhcC--CCCcEEEEEEecCcchHHHHHHHHhcCccccCC---cceEEEEEeCCCCCHHHHH
Q 037627 173 SIEGNVVGFDDDVSKLLAKLLNK--EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNK---FDRCAWVSVSQDYDTKDLL 247 (858)
Q Consensus 173 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~ 247 (858)
..++.|+||+.+++.+.+++... ....+.+.|+|++|+||||||+.++. ..... -..++|+++....+...++
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHH
Confidence 34578999999999999988753 34466899999999999999999997 33322 2246788876666777888
Q ss_pred HHHHHhccccccchhhhhccHHHHHHHHHHHhc--CceEEEEEEcCCCh------hhHHHHHhhCCC-CCCCcEEEEEeC
Q 037627 248 LRIIRSFKINVLTRELEEMREEDLERYLHNCLQ--GKSYLVVVDDAWQK------ETWESLKRAFPD-NKNGSRVIITTR 318 (858)
Q Consensus 248 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDd~~~~------~~~~~l~~~l~~-~~~gs~ilvTtR 318 (858)
..++..++...+. ...+...+...+.+.+. +++.+||+|+++.. +.+..+...+.. ...+..+|+||+
T Consensus 95 ~~i~~~l~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~ 171 (386)
T 2qby_A 95 ADLLESLDVKVPF---TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITN 171 (386)
T ss_dssp HHHTTTTSCCCCS---SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEES
T ss_pred HHHHHHhCCCCCC---CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEEC
Confidence 8888777543221 11223444555555553 45899999999753 334444433321 233566788887
Q ss_pred chhHHhhcC------CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcC---CChHHHHHHHhHh-c-
Q 037627 319 IKEVAERSD------ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCR---GLPLAIVVLGGLL-S- 387 (858)
Q Consensus 319 ~~~~~~~~~------~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~---G~Plai~~~~~~l-~- 387 (858)
......... .....+.+++++.++..+++.+.+...........+..+.|++.++ |.|..+..+.... .
T Consensus 172 ~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 172 DVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEI 251 (386)
T ss_dssp CGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 664322211 1114799999999999999988653211111112455667777777 9998443332221 1
Q ss_pred ----C--C-ChHHHHHHHHHHHhhhhcCccchhhHHHhhhccCcHHHHHHHhHhcCCCC-C-ceeCHHHHHHHH----HH
Q 037627 388 ----M--K-KPQEWRRVRDHLWQHLKNDCIHISSLLNLSFRNLSHELKLCFLYLGLFPE-D-FEINVQTLIRLL----VA 454 (858)
Q Consensus 388 ----~--~-~~~~w~~~~~~l~~~~~~~~~~i~~~l~~s~~~L~~~~k~~f~~la~fp~-~-~~i~~~~l~~~w----~a 454 (858)
+ . +.+.+..+.+... ...+.-++..+++..+..+..++.+.+ + ..+....+.+.. -.
T Consensus 252 a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~ 321 (386)
T 2qby_A 252 AERMKDTKVKEEYVYMAKEEIE----------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKK 321 (386)
T ss_dssp HHHTTCSSCCHHHHHHHHHHHH----------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHH
T ss_pred HHhcCCCccCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHh
Confidence 1 1 3445554444332 124556678899888888887773211 1 234444333222 11
Q ss_pred cCccccCCCCCHHHHHHHHHHHHHhcccccccc
Q 037627 455 EGFIQQDTDRSTEEVAGEILDELINRSLIQIDK 487 (858)
Q Consensus 455 eg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~ 487 (858)
-| + . .........+++.|...|+|+...
T Consensus 322 ~g-~---~-~~~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 322 LG-V---E-AVTQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp HT-C---C-CCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred cC-C---C-CCCHHHHHHHHHHHHhCCCEEEEe
Confidence 12 1 1 112344678899999999997643
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.49 E-value=5.5e-14 Score=159.04 Aligned_cols=175 Identities=15% Similarity=0.149 Sum_probs=135.7
Q ss_pred ccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhccccccccccccccccCCCCCccccccceeeccccc
Q 037627 591 NLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGNFTGTLNIENLSNLQTLKYVERGSWA 670 (858)
Q Consensus 591 ~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 670 (858)
+|++|+|++|.++.+|..+. ++|++|+|++|. +..+| . .+++|+.|++++|....
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~-l~~ip-~---------------------~l~~L~~L~Ls~N~l~~ 114 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNA-LISLP-E---------------------LPASLEYLDACDNRLST 114 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSC-CSCCC-C---------------------CCTTCCEEECCSSCCSC
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCC-Ccccc-c---------------------ccCCCCEEEccCCCCCC
Confidence 89999999999999998774 899999999994 44565 1 24677888888887665
Q ss_pred ccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhc
Q 037627 671 EINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEV 749 (858)
Q Consensus 671 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~ 749 (858)
...+. .+|+.|++++|.... ++ . .+++|+.|++++|.+..++ . .+++|+.|++++| +..+|. +.
T Consensus 115 ip~l~--~~L~~L~Ls~N~l~~-lp-~---~l~~L~~L~Ls~N~l~~lp---~--~l~~L~~L~Ls~N~L~~lp~-l~-- 179 (571)
T 3cvr_A 115 LPELP--ASLKHLDVDNNQLTM-LP-E---LPALLEYINADNNQLTMLP---E--LPTSLEVLSVRNNQLTFLPE-LP-- 179 (571)
T ss_dssp CCCCC--TTCCEEECCSSCCSC-CC-C---CCTTCCEEECCSSCCSCCC---C--CCTTCCEEECCSSCCSCCCC-CC--
T ss_pred cchhh--cCCCEEECCCCcCCC-CC-C---cCccccEEeCCCCccCcCC---C--cCCCcCEEECCCCCCCCcch-hh--
Confidence 44322 299999999998665 55 3 6899999999999877543 2 5789999999997 777887 42
Q ss_pred cCCccEEEEecccCCCCCccccCCCCCC-------CeeEeeccccCCceEEECCCCccccceeeecCCCC
Q 037627 750 LPNLECLSLKKSHLKEDPMPKLEKLPNL-------TILDLGLKSYGGKKMICTTKGFHLLEILQLIDLND 812 (858)
Q Consensus 750 l~~L~~L~L~~n~l~~~~~~~l~~l~~L-------~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~ 812 (858)
++|+.|+|++|.|+. +|. +.. +| +.|+|++|.++. ++.....+++|+.|++++|+-
T Consensus 180 -~~L~~L~Ls~N~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 180 -ESLEALDVSTNLLES-LPA-VPV--RNHHSEETEIFFRCRENRITH--IPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp -TTCCEEECCSSCCSS-CCC-CC----------CCEEEECCSSCCCC--CCGGGGGSCTTEEEECCSSSC
T ss_pred -CCCCEEECcCCCCCc-hhh-HHH--hhhcccccceEEecCCCccee--cCHHHhcCCCCCEEEeeCCcC
Confidence 899999999999984 444 554 77 999999999985 333344589999999998653
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.48 E-value=3e-14 Score=163.17 Aligned_cols=188 Identities=19% Similarity=0.173 Sum_probs=145.7
Q ss_pred CcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhccccccccccccccccCCCCCccccccceeeccc
Q 037627 589 LVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGNFTGTLNIENLSNLQTLKYVERGS 668 (858)
Q Consensus 589 l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~~~~~ 668 (858)
+..+..+.++.+.+..++ .+..+++|+.|++++| .+..+|. +..+++|+.|++++|..
T Consensus 20 l~~l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n-~i~~l~~--------------------l~~l~~L~~L~Ls~N~l 77 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNS-DIKSVQG--------------------IQYLPNVTKLFLNGNKL 77 (605)
T ss_dssp HHHHHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTC-CCCCCTT--------------------GGGCTTCCEEECTTSCC
T ss_pred HHHHHHHhccCCCccccc-chhcCCCCCEEECcCC-CCCCChH--------------------HccCCCCCEEEeeCCCC
Confidence 445666777777777664 3578899999999998 4444442 34456677777777776
Q ss_pred ccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhh
Q 037627 669 WAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLH 747 (858)
Q Consensus 669 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~ 747 (858)
....++..+++|+.|++++|..... ..+..+++|+.|+|++|.+.. ++.+..+++|+.|+|++| +..+ ..+.
T Consensus 78 ~~~~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~---l~~l~~l~~L~~L~Ls~N~l~~l-~~l~ 150 (605)
T 1m9s_A 78 TDIKPLTNLKNLGWLFLDENKIKDL---SSLKDLKKLKSLSLEHNGISD---INGLVHLPQLESLYLGNNKITDI-TVLS 150 (605)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCCC---TTSTTCTTCCEEECTTSCCCC---CGGGGGCTTCSEEECCSSCCCCC-GGGG
T ss_pred CCChhhccCCCCCEEECcCCCCCCC---hhhccCCCCCEEEecCCCCCC---CccccCCCccCEEECCCCccCCc-hhhc
Confidence 6666677888888888888875442 468889999999999987764 356788999999999997 5555 4555
Q ss_pred hccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECCCCccccceeeecCCC
Q 037627 748 EVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLN 811 (858)
Q Consensus 748 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~ 811 (858)
. +++|+.|+|++|.+++..| +..+++|+.|+|++|.+++. .....+++|+.|++++|+
T Consensus 151 ~-l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l---~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 151 R-LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp S-CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC---GGGTTCTTCSEEECCSEE
T ss_pred c-cCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC---hHHccCCCCCEEEccCCc
Confidence 5 7999999999999987655 99999999999999999864 245678999999999854
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=5.3e-16 Score=167.93 Aligned_cols=241 Identities=12% Similarity=0.063 Sum_probs=143.3
Q ss_pred eEeccCCccccc-CcccccCCCCcEEeccccccccccc----hhhhccc-cccccc---ccccc--ccCCCCC-----cc
Q 037627 594 YLRLTNAHIDVI-PSCIAKLQRLQTLDISGNMAFMELP----REICELK-ELRHLI---GNFTG--TLNIENL-----SN 657 (858)
Q Consensus 594 ~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~n~~~~~lp----~~~~~l~-~L~~L~---~~~~~--~~~~~~l-----~~ 657 (858)
++.+++|.++.. |..+...++|++|++++|.+....+ ..+..++ +|++|+ +.+.. +..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 567888998854 5545556669999999996544444 5677777 788883 23322 2223332 78
Q ss_pred ccccceeecccccccC------cccc-cCCCeeEEeecccccccchhhh----hc-CCCCCeEEeeccCCccccC---CC
Q 037627 658 LQTLKYVERGSWAEIN------PEKL-VNLRDLRIISKYQEEEFSFKSI----AY-LKNLQLLSIRLSDDTCFDS---LQ 722 (858)
Q Consensus 658 L~~L~l~~~~~~~~~~------~~~l-~~L~~L~l~~~~~~~~~~~~~l----~~-l~~L~~L~l~~~~~~~~~~---~~ 722 (858)
|++|++++|....... +..+ ++|+.|++++|....... ..+ .. .++|+.|++++|.+...+. ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS-SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH-HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH-HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 8888888887543321 2233 678888888887544433 333 33 2578888888776543210 01
Q ss_pred CCCCCC-CccEEEeccc-CCCCCh-hhhh---cc-CCccEEEEecccCCCCC----ccccCC-CCCCCeeEeeccccCCc
Q 037627 723 PLSDCS-YLIDLRLSGK-IEKLPE-DLHE---VL-PNLECLSLKKSHLKEDP----MPKLEK-LPNLTILDLGLKSYGGK 790 (858)
Q Consensus 723 ~l~~l~-~L~~L~l~~~-~~~~p~-~~~~---~l-~~L~~L~L~~n~l~~~~----~~~l~~-l~~L~~L~L~~n~~~~~ 790 (858)
.+..++ +|++|++++| +...+. .+.. .+ ++|+.|+|++|.++... +..+.. .++|+.|+|++|.+++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 122333 7888888875 433322 2221 13 48888888888876532 333444 35888888888877653
Q ss_pred eE---EECCCCccccceeeecCCC--CCC-----eEEEccCccccccceeecccc
Q 037627 791 KM---ICTTKGFHLLEILQLIDLN--DLA-----QWQVEDGAMPILRGLRVTNAY 835 (858)
Q Consensus 791 ~~---~~~~~~~~~L~~L~l~~~~--~l~-----~~~~~~~~l~~L~~L~l~~c~ 835 (858)
.. ......+++|+.|++++|. .+. .+......+++|+.|++++|+
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 21 2223556778888887753 111 111123356677788888774
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.48 E-value=1.6e-13 Score=135.66 Aligned_cols=64 Identities=23% Similarity=0.380 Sum_probs=34.7
Q ss_pred CCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccC
Q 037627 725 SDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYG 788 (858)
Q Consensus 725 ~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 788 (858)
..+++|++|++++| +..+|...+..+++|+.|+|++|.+++.++..+..+++|+.|+|++|.+.
T Consensus 97 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 97 DKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 34444444444443 33344433333566666666666666555555666666666666666543
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.47 E-value=8.8e-14 Score=137.54 Aligned_cols=176 Identities=16% Similarity=0.136 Sum_probs=88.6
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCcc-cccCCCCcEEeccccccccccchhhhccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPSC-IAKLQRLQTLDISGNMAFMELPREICELKEL 639 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L 639 (858)
+.++.+++. +. .+|..+ .++|++|++++|.++.+|.. +.++++|++|++++|.+ ..+|..
T Consensus 10 ~~v~c~~~~-------l~--~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~------- 70 (208)
T 2o6s_A 10 TTVECYSQG-------RT--SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNG------- 70 (208)
T ss_dssp TEEECCSSC-------CS--SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTT-------
T ss_pred CEEEecCCC-------cc--CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCcc-CccChh-------
Confidence 445555555 55 666554 35888888888888877654 57788888888888843 333332
Q ss_pred cccccccccccCCCCCccccccceeecccccccC--cccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCcc
Q 037627 640 RHLIGNFTGTLNIENLSNLQTLKYVERGSWAEIN--PEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTC 717 (858)
Q Consensus 640 ~~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 717 (858)
.+..+++|++|++++|....... +..+++|+.|++.+|......+ ..+..+++|+.|++++|.+..
T Consensus 71 -----------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 71 -----------VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPD-GVFDKLTQLKDLRLYQNQLKS 138 (208)
T ss_dssp -----------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSC
T ss_pred -----------hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCH-hHhccCCcCCEEECCCCccce
Confidence 13344555555555554332221 2334444444444444332222 334445555555555544432
Q ss_pred ccCCCCCCCCCCccEEEecccCCCCChhhhhccCCccEEEEecccCCCCCccccCCC
Q 037627 718 FDSLQPLSDCSYLIDLRLSGKIEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKL 774 (858)
Q Consensus 718 ~~~~~~l~~l~~L~~L~l~~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 774 (858)
+ ....+..+++|+.|++++|- +... +++|+.|+++.|.+++.+|..++.+
T Consensus 139 ~-~~~~~~~l~~L~~L~l~~N~-----~~~~-~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 139 V-PDGVFDRLTSLQYIWLHDNP-----WDCT-CPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp C-CTTTTTTCTTCCEEECCSCC-----BCCC-TTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred e-CHHHhccCCCccEEEecCCC-----eecC-CCCHHHHHHHHHhCCceeeccCccc
Confidence 2 11223344444444444431 0011 2444444444444444444444433
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.47 E-value=1.4e-13 Score=134.77 Aligned_cols=154 Identities=21% Similarity=0.311 Sum_probs=92.3
Q ss_pred ccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhccccccccccccccccCCCCCccccccceee
Q 037627 586 MVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGNFTGTLNIENLSNLQTLKYVE 665 (858)
Q Consensus 586 ~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~~ 665 (858)
...+++|++|++++|.++.+| .+..+++|++|++++| .+..++ . +..+++|+.|++++
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~-------------------l~~l~~L~~L~l~~ 97 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-P-------------------ISGLSNLERLRIMG 97 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-G-------------------GTTCTTCCEEEEEC
T ss_pred hhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-h-------------------hhcCCCCCEEEeEC
Confidence 367788888888888888888 6888888888888888 333322 1 33455555666665
Q ss_pred ccccc--ccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEecccCCCCC
Q 037627 666 RGSWA--EINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGKIEKLP 743 (858)
Q Consensus 666 ~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~p 743 (858)
|.... ...+..+++|+.|++++|......+ ..+..+++|+.|++++|.. +..+|
T Consensus 98 n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~~-----------------------i~~~~ 153 (197)
T 4ezg_A 98 KDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL-TKINTLPKVNSIDLSYNGA-----------------------ITDIM 153 (197)
T ss_dssp TTCBGGGSCCCTTCTTCCEEECCSSBCBGGGH-HHHTTCSSCCEEECCSCTB-----------------------CCCCG
T ss_pred CccCcccChhhcCCCCCCEEEecCCccCcHhH-HHHhhCCCCCEEEccCCCC-----------------------ccccH
Confidence 55332 2233344445555555444433333 4444455555555444420 33344
Q ss_pred hhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCC
Q 037627 744 EDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGG 789 (858)
Q Consensus 744 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 789 (858)
.+.. +++|+.|+|++|.+++.. .+..+++|+.|++++|.+.+
T Consensus 154 -~l~~-l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 154 -PLKT-LPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp -GGGG-CSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred -hhcC-CCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence 3444 588888888888876532 67788888888888887653
No 116
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.47 E-value=1.9e-13 Score=142.53 Aligned_cols=170 Identities=22% Similarity=0.226 Sum_probs=128.9
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhcccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELR 640 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~ 640 (858)
+.|++++|. +. .+| .+..+++|++|++++|.++.+|. +.++++|++|++++|. +..+|.
T Consensus 49 ~~L~l~~~~-------i~--~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--------- 107 (291)
T 1h6t_A 49 DQIIANNSD-------IK--SVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS--------- 107 (291)
T ss_dssp CEEECTTSC-------CC--CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG---------
T ss_pred cEEEccCCC-------cc--cCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh---------
Confidence 888999988 76 665 48889999999999999999877 9999999999999994 444432
Q ss_pred ccccccccccCCCCCccccccceeecccccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccC
Q 037627 641 HLIGNFTGTLNIENLSNLQTLKYVERGSWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDS 720 (858)
Q Consensus 641 ~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 720 (858)
+..+++|+.|++++|.......+..+++|+.|++++|..... ..+..+++|+.|++++|.+...+
T Consensus 108 -----------l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~~- 172 (291)
T 1h6t_A 108 -----------LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIV- 172 (291)
T ss_dssp -----------GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCG-
T ss_pred -----------hccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCccccch-
Confidence 344566666667766655555566777888888887765543 46778888999999888776542
Q ss_pred CCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccc
Q 037627 721 LQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPK 770 (858)
Q Consensus 721 ~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~ 770 (858)
.+..+++|+.|++++| +..+|. +.. +++|+.|+|++|.++..+...
T Consensus 173 --~l~~l~~L~~L~L~~N~i~~l~~-l~~-l~~L~~L~l~~n~i~~~~~~~ 219 (291)
T 1h6t_A 173 --PLAGLTKLQNLYLSKNHISDLRA-LAG-LKNLDVLELFSQECLNKPINH 219 (291)
T ss_dssp --GGTTCTTCCEEECCSSCCCBCGG-GTT-CTTCSEEEEEEEEEECCCEEC
T ss_pred --hhcCCCccCEEECCCCcCCCChh-hcc-CCCCCEEECcCCcccCCcccc
Confidence 3778889999999886 666653 555 699999999999887654433
No 117
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.46 E-value=2.3e-15 Score=175.14 Aligned_cols=144 Identities=13% Similarity=0.052 Sum_probs=75.9
Q ss_pred eeeeccCCccccccccCCCC---CccccccCCcccceEeccCCc--cc--ccCcccccCCCCcEEeccccccccccchhh
Q 037627 561 RVLNFEGVVSNVLCSVGGCY---NLPEEMVKLVNLKYLRLTNAH--ID--VIPSCIAKLQRLQTLDISGNMAFMELPREI 633 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~---~lp~~~~~l~~L~~L~L~~n~--i~--~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~ 633 (858)
++|+|++|. +... .++.....+++|++|++++|. ++ .++.-+.++++|++|++++|...+.+|..+
T Consensus 159 ~~L~L~~~~-------i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~ 231 (594)
T 2p1m_B 159 KELDLRESD-------VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL 231 (594)
T ss_dssp CEEECTTCE-------EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHH
T ss_pred CEEeCcCCc-------cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHH
Confidence 666666665 2210 233334466677777777775 21 222223456777777777774444455555
Q ss_pred hcccccccccccc-------------------------------cccc----CCCCCccccccceeeccccccc---Ccc
Q 037627 634 CELKELRHLIGNF-------------------------------TGTL----NIENLSNLQTLKYVERGSWAEI---NPE 675 (858)
Q Consensus 634 ~~l~~L~~L~~~~-------------------------------~~~~----~~~~l~~L~~L~l~~~~~~~~~---~~~ 675 (858)
..+++|++|.... .... .+..+++|+.|++++|...... ...
T Consensus 232 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~ 311 (594)
T 2p1m_B 232 QRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLC 311 (594)
T ss_dssp HHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHT
T ss_pred hcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHh
Confidence 5666666552100 0000 1124567777777777632211 123
Q ss_pred cccCCCeeEEeecccccccchhhhhcCCCCCeEEeec
Q 037627 676 KLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRL 712 (858)
Q Consensus 676 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 712 (858)
.+++|++|++.+|.....+. .....+++|+.|++..
T Consensus 312 ~~~~L~~L~l~~~~~~~~l~-~l~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 312 QCPKLQRLWVLDYIEDAGLE-VLASTCKDLRELRVFP 347 (594)
T ss_dssp TCTTCCEEEEEGGGHHHHHH-HHHHHCTTCCEEEEEC
T ss_pred cCCCcCEEeCcCccCHHHHH-HHHHhCCCCCEEEEec
Confidence 56777777777762211222 2333467777777743
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.45 E-value=1.8e-13 Score=147.76 Aligned_cols=173 Identities=22% Similarity=0.253 Sum_probs=100.8
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCcc-cc-cCCCCcEEeccccccccccchhhhcccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPSC-IA-KLQRLQTLDISGNMAFMELPREICELKE 638 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~~-l~-~l~~L~~L~L~~n~~~~~lp~~~~~l~~ 638 (858)
++++++++. +. .+|..+. ..+++|+|++|.++.+|.. +. ++++|++|+|++|.+....|..
T Consensus 21 ~~l~c~~~~-------l~--~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~------ 83 (361)
T 2xot_A 21 NILSCSKQQ-------LP--NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA------ 83 (361)
T ss_dssp TEEECCSSC-------CS--SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTT------
T ss_pred CEEEeCCCC-------cC--ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhh------
Confidence 567777777 66 7777654 3588888888888877655 44 7888888888888433332222
Q ss_pred ccccccccccccCCCCCccccccceeecccccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccc
Q 037627 639 LRHLIGNFTGTLNIENLSNLQTLKYVERGSWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCF 718 (858)
Q Consensus 639 L~~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 718 (858)
+..+++|+.|++++|...... + ..+..+++|+.|+|++|.+..+
T Consensus 84 -------------~~~l~~L~~L~Ls~N~l~~~~----------------------~-~~~~~l~~L~~L~L~~N~i~~~ 127 (361)
T 2xot_A 84 -------------FVPVPNLRYLDLSSNHLHTLD----------------------E-FLFSDLQALEVLLLYNNHIVVV 127 (361)
T ss_dssp -------------TTTCTTCCEEECCSSCCCEEC----------------------T-TTTTTCTTCCEEECCSSCCCEE
T ss_pred -------------ccCCCCCCEEECCCCcCCcCC----------------------H-HHhCCCcCCCEEECCCCcccEE
Confidence 344555556666665533222 1 3344455555555555544433
Q ss_pred cCCCCCCCCCCccEEEeccc-CCCCChhhh---hccCCccEEEEecccCCCCCccccCCCCCC--CeeEeecccc
Q 037627 719 DSLQPLSDCSYLIDLRLSGK-IEKLPEDLH---EVLPNLECLSLKKSHLKEDPMPKLEKLPNL--TILDLGLKSY 787 (858)
Q Consensus 719 ~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~---~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~L~~n~~ 787 (858)
....+..+++|+.|+|++| +..+|..++ ..+++|+.|+|++|.++..++..+..++++ +.|+|++|.+
T Consensus 128 -~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 128 -DRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp -CTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred -CHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 2234445555555555553 445555443 225666666666666665555556666653 6666666654
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.45 E-value=7.9e-13 Score=132.59 Aligned_cols=87 Identities=22% Similarity=0.294 Sum_probs=58.5
Q ss_pred cCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCe
Q 037627 701 YLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTI 779 (858)
Q Consensus 701 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 779 (858)
.+++|+.|+|++|.+..+ ....+..+++|+.|++++| +..+|..+.. +++|+.|+|++|.++..++..+..+++|+.
T Consensus 86 ~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 86 SLTQLTVLDLGTNQLTVL-PSAVFDRLVHLKELFMCCNKLTELPRGIER-LTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163 (229)
T ss_dssp TCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCSCCTTGGG-CTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCcCEEECCCCcCCcc-ChhHhCcchhhCeEeccCCcccccCccccc-CCCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence 344444444444443322 1122445556666666664 5566777766 699999999999998777778889999999
Q ss_pred eEeeccccCC
Q 037627 780 LDLGLKSYGG 789 (858)
Q Consensus 780 L~L~~n~~~~ 789 (858)
|+|++|.+..
T Consensus 164 L~l~~N~~~c 173 (229)
T 3e6j_A 164 AYLFGNPWDC 173 (229)
T ss_dssp EECTTSCBCT
T ss_pred EEeeCCCccC
Confidence 9999998764
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.44 E-value=7.8e-14 Score=143.10 Aligned_cols=165 Identities=17% Similarity=0.160 Sum_probs=101.9
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhcccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELR 640 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~ 640 (858)
..++++++. +. .++ .+..+++|++|++++|.++.+| .+..+++|++|++++|. +..+|.
T Consensus 22 ~~l~l~~~~-------i~--~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~--------- 80 (263)
T 1xeu_A 22 VKQNLGKQS-------VT--DLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP--------- 80 (263)
T ss_dssp HHHHHTCSC-------TT--SEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG---------
T ss_pred HHHHhcCCC-------cc--ccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh---------
Confidence 445666666 55 555 5667777777777777777776 57777777777777773 333332
Q ss_pred ccccccccccCCCCCccccccceeecccccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccC
Q 037627 641 HLIGNFTGTLNIENLSNLQTLKYVERGSWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDS 720 (858)
Q Consensus 641 ~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 720 (858)
+..+++|+.|++++|.......... ++|+.|++++|.+..+
T Consensus 81 -----------l~~l~~L~~L~L~~N~l~~l~~~~~--------------------------~~L~~L~L~~N~l~~~-- 121 (263)
T 1xeu_A 81 -----------LKDLTKLEELSVNRNRLKNLNGIPS--------------------------ACLSRLFLDNNELRDT-- 121 (263)
T ss_dssp -----------GTTCSSCCEEECCSSCCSCCTTCCC--------------------------SSCCEEECCSSCCSBS--
T ss_pred -----------hccCCCCCEEECCCCccCCcCcccc--------------------------CcccEEEccCCccCCC--
Confidence 2344555566666665333222211 4556666665554432
Q ss_pred CCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCc
Q 037627 721 LQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGK 790 (858)
Q Consensus 721 ~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~ 790 (858)
+.+..+++|+.|++++| +..+| .+.. +++|+.|+|++|.+++. ..+..+++|+.|++++|.+...
T Consensus 122 -~~l~~l~~L~~L~Ls~N~i~~~~-~l~~-l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 122 -DSLIHLKNLEILSIRNNKLKSIV-MLGF-LSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -GGGTTCTTCCEEECTTSCCCBCG-GGGG-CTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred -hhhcCcccccEEECCCCcCCCCh-HHcc-CCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 34555666666666664 44444 3444 57888888888877654 5677788888888888777654
No 121
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.43 E-value=1.7e-13 Score=133.99 Aligned_cols=108 Identities=23% Similarity=0.304 Sum_probs=80.0
Q ss_pred hhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCC-CChhhhhccCCccEEEEeccc-CCCCCccccCC
Q 037627 697 KSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEK-LPEDLHEVLPNLECLSLKKSH-LKEDPMPKLEK 773 (858)
Q Consensus 697 ~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~-~p~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~ 773 (858)
..+..+++|+.|++++|.+... .+..+..+++|+.|++++| +.. .|..+.. +++|+.|+|++|. ++. .+ .+..
T Consensus 82 ~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~-l~~L~~L~L~~n~~i~~-~~-~l~~ 157 (197)
T 4ezg_A 82 NPISGLSNLERLRIMGKDVTSD-KIPNLSGLTSLTLLDISHSAHDDSILTKINT-LPKVNSIDLSYNGAITD-IM-PLKT 157 (197)
T ss_dssp GGGTTCTTCCEEEEECTTCBGG-GSCCCTTCTTCCEEECCSSBCBGGGHHHHTT-CSSCCEEECCSCTBCCC-CG-GGGG
T ss_pred hhhhcCCCCCEEEeECCccCcc-cChhhcCCCCCCEEEecCCccCcHhHHHHhh-CCCCCEEEccCCCCccc-cH-hhcC
Confidence 3456677777777777665542 3455667778888888875 432 4555665 7999999999998 654 44 7899
Q ss_pred CCCCCeeEeeccccCCceEEECCCCccccceeeecCCC
Q 037627 774 LPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLN 811 (858)
Q Consensus 774 l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~ 811 (858)
+++|+.|++++|.+++.. ....+++|+.|++.+++
T Consensus 158 l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 158 LPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC-
T ss_pred CCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCcc
Confidence 999999999999998632 45678999999999743
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.43 E-value=2.1e-13 Score=139.89 Aligned_cols=139 Identities=21% Similarity=0.211 Sum_probs=96.8
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhcccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELR 640 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~ 640 (858)
++|++++|. +. .+| .+..+++|++|+|++|.++.+|. +.++++|++|++++| .+..+|.
T Consensus 44 ~~L~l~~n~-------i~--~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~--------- 102 (263)
T 1xeu_A 44 QNFNGDNSN-------IQ--SLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN-RLKNLNG--------- 102 (263)
T ss_dssp SEEECTTSC-------CC--CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-CCSCCTT---------
T ss_pred cEEECcCCC-------cc--cch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-ccCCcCc---------
Confidence 899999998 77 777 78999999999999999999987 999999999999999 4444443
Q ss_pred ccccccccccCCCCCccccccceeecccccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccC
Q 037627 641 HLIGNFTGTLNIENLSNLQTLKYVERGSWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDS 720 (858)
Q Consensus 641 ~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 720 (858)
+.. ++|+.|++++|.......+..+++|+.|++++|..... ..+..+++|+.|++++|.+...
T Consensus 103 -----------~~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~---~~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 103 -----------IPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI---VMLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp -----------CCC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC---GGGGGCTTCCEEECTTSCCCBC--
T ss_pred -----------ccc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCC---hHHccCCCCCEEECCCCcCcch--
Confidence 112 67777788877755554455666666666666654332 2455666666666666654432
Q ss_pred CCCCCCCCCccEEEeccc
Q 037627 721 LQPLSDCSYLIDLRLSGK 738 (858)
Q Consensus 721 ~~~l~~l~~L~~L~l~~~ 738 (858)
..+..+++|+.|++++|
T Consensus 166 -~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp -TTSTTCCCCCEEEEEEE
T ss_pred -HHhccCCCCCEEeCCCC
Confidence 34444555555555553
No 123
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.42 E-value=9.3e-13 Score=131.11 Aligned_cols=92 Identities=21% Similarity=0.157 Sum_probs=59.1
Q ss_pred hhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCC
Q 037627 697 KSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLP 775 (858)
Q Consensus 697 ~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 775 (858)
..+..+++|+.|+|++|.+..+ ....+..+++|+.|+|++| +..++...+..+++|+.|+|++|.+++..+..+..++
T Consensus 74 ~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 152 (220)
T 2v9t_B 74 DAFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152 (220)
T ss_dssp TTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred HHhhCCcCCCEEECCCCcCCcc-CHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCC
Confidence 3444455555555555544433 1223455566666666664 4444433333368889999999988887777888889
Q ss_pred CCCeeEeeccccCC
Q 037627 776 NLTILDLGLKSYGG 789 (858)
Q Consensus 776 ~L~~L~L~~n~~~~ 789 (858)
+|+.|+|++|.+..
T Consensus 153 ~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 153 AIQTMHLAQNPFIC 166 (220)
T ss_dssp TCCEEECCSSCEEC
T ss_pred CCCEEEeCCCCcCC
Confidence 99999999887753
No 124
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.41 E-value=6e-13 Score=132.47 Aligned_cols=90 Identities=13% Similarity=0.143 Sum_probs=56.2
Q ss_pred hhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCC-ChhhhhccCCccEEEEecccCCCCCccccCCCC
Q 037627 698 SIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKL-PEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLP 775 (858)
Q Consensus 698 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~-p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 775 (858)
.+..+++|+.|++++|.+..+ ....+..+++|++|+|++| +..+ |..+.. +++|+.|+|++|.+++..|..|..++
T Consensus 76 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~ 153 (220)
T 2v70_A 76 AFEGASGVNEILLTSNRLENV-QHKMFKGLESLKTLMLRSNRITCVGNDSFIG-LSSVRLLSLYDNQITTVAPGAFDTLH 153 (220)
T ss_dssp TTTTCTTCCEEECCSSCCCCC-CGGGGTTCSSCCEEECTTSCCCCBCTTSSTT-CTTCSEEECTTSCCCCBCTTTTTTCT
T ss_pred HhCCCCCCCEEECCCCccCcc-CHhHhcCCcCCCEEECCCCcCCeECHhHcCC-CccCCEEECCCCcCCEECHHHhcCCC
Confidence 344444444455544444332 1122444555555555553 3433 333444 68888899999988887788888899
Q ss_pred CCCeeEeeccccCC
Q 037627 776 NLTILDLGLKSYGG 789 (858)
Q Consensus 776 ~L~~L~L~~n~~~~ 789 (858)
+|+.|+|++|.+..
T Consensus 154 ~L~~L~L~~N~l~c 167 (220)
T 2v70_A 154 SLSTLNLLANPFNC 167 (220)
T ss_dssp TCCEEECCSCCEEC
T ss_pred CCCEEEecCcCCcC
Confidence 99999999888764
No 125
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.39 E-value=7.3e-15 Score=170.90 Aligned_cols=181 Identities=17% Similarity=0.137 Sum_probs=85.0
Q ss_pred CCCCccccccceeecccc-ccc-CcccccCCCeeEEeec--------c-cccccchhhh-hcCCCCCeEEeeccCCcccc
Q 037627 652 IENLSNLQTLKYVERGSW-AEI-NPEKLVNLRDLRIISK--------Y-QEEEFSFKSI-AYLKNLQLLSIRLSDDTCFD 719 (858)
Q Consensus 652 ~~~l~~L~~L~l~~~~~~-~~~-~~~~l~~L~~L~l~~~--------~-~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~ 719 (858)
+..+++|+.|++.+|-.. ... ....+++|++|++..+ . ...... ..+ ..+++|+.|.+.++.....
T Consensus 310 ~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l-~~l~~~~~~L~~L~~~~~~l~~~- 387 (594)
T 2p1m_B 310 LCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL-VSVSMGCPKLESVLYFCRQMTNA- 387 (594)
T ss_dssp HTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH-HHHHHHCTTCCEEEEEESCCCHH-
T ss_pred HhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH-HHHHHhchhHHHHHHhcCCcCHH-
Confidence 345667777776665210 000 0124566666666431 1 111111 122 2366666666555543322
Q ss_pred CCCCC-CCCCCccEEEec--c-----cCCCCChh-----hhhccCCccEEEEecccCCCCCccccCC-CCCCCeeEeecc
Q 037627 720 SLQPL-SDCSYLIDLRLS--G-----KIEKLPED-----LHEVLPNLECLSLKKSHLKEDPMPKLEK-LPNLTILDLGLK 785 (858)
Q Consensus 720 ~~~~l-~~l~~L~~L~l~--~-----~~~~~p~~-----~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~L~~n 785 (858)
.+..+ ..+++|+.|+++ + +++..|.. +...+++|+.|+|++ .+++..+..+.. +++|+.|+|++|
T Consensus 388 ~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~ 466 (594)
T 2p1m_B 388 ALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFA 466 (594)
T ss_dssp HHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCC
Confidence 11112 135666666666 2 23322211 122256666666655 444433344443 666666666666
Q ss_pred ccCCceEEECCCCccccceeeecCCCCCCeEEE--ccCccccccceeeccccc
Q 037627 786 SYGGKKMICTTKGFHLLEILQLIDLNDLAQWQV--EDGAMPILRGLRVTNAYK 836 (858)
Q Consensus 786 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~c~~ 836 (858)
.+++..+......+++|+.|++++|+. ..... ....+++|+.|++++|+.
T Consensus 467 ~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 467 GDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 654432211112356666666666553 22211 123456666666666653
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.36 E-value=7.7e-15 Score=167.09 Aligned_cols=195 Identities=15% Similarity=0.140 Sum_probs=148.9
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCc--------------ccccCcccccCCCCcEEe-cccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAH--------------IDVIPSCIAKLQRLQTLD-ISGNMA 625 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~--------------i~~lp~~l~~l~~L~~L~-L~~n~~ 625 (858)
+.|+|++|. ++ .+|..+++|++|+.|++++|. .+.+|..++++++|+.|+ ++.| .
T Consensus 352 ~~L~Ls~n~-------L~--~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~ 421 (567)
T 1dce_A 352 FRCELSVEK-------ST--VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-Y 421 (567)
T ss_dssp SSCCCCHHH-------HH--HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-H
T ss_pred eeccCChhh-------HH--hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-c
Confidence 678999998 77 899999999999999998764 234567788899999998 6666 2
Q ss_pred ccccchhhhccccccccccccccccCCCCCccccccceeecccccccCcccccCCCeeEEeecccccccchhhhhcCCCC
Q 037627 626 FMELPREICELKELRHLIGNFTGTLNIENLSNLQTLKYVERGSWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNL 705 (858)
Q Consensus 626 ~~~lp~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L 705 (858)
...++. +..-.+.+.... ...|+.|++++|.....+.+..+++|+.|++++|... .+| ..++.+++|
T Consensus 422 ~~~L~~-------l~l~~n~i~~l~----~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~-~lp-~~~~~l~~L 488 (567)
T 1dce_A 422 LDDLRS-------KFLLENSVLKME----YADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALP-PALAALRCL 488 (567)
T ss_dssp HHHHHH-------HHHHHHHHHHHH----HTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC-CCC-GGGGGCTTC
T ss_pred cchhhh-------hhhhcccccccC----ccCceEEEecCCCCCCCcCccccccCcEeecCccccc-ccc-hhhhcCCCC
Confidence 222221 110011111111 1248889999998777766889999999999999876 667 789999999
Q ss_pred CeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCC--ChhhhhccCCccEEEEecccCCCCCccc---cCCCCCCCe
Q 037627 706 QLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKL--PEDLHEVLPNLECLSLKKSHLKEDPMPK---LEKLPNLTI 779 (858)
Q Consensus 706 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~--p~~~~~~l~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~ 779 (858)
+.|+|++|.+..+ +.+..+++|+.|+|++| +..+ |..+.. +++|+.|+|++|.+++.++.. +..+|+|+.
T Consensus 489 ~~L~Ls~N~l~~l---p~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~-l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 489 EVLQASDNALENV---DGVANLPRLQELLLCNNRLQQSAAIQPLVS-CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp CEEECCSSCCCCC---GGGTTCSSCCEEECCSSCCCSSSTTGGGGG-CTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred CEEECCCCCCCCC---cccCCCCCCcEEECCCCCCCCCCCcHHHhc-CCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence 9999999988754 47889999999999996 7776 777777 799999999999998665422 334889998
Q ss_pred eEe
Q 037627 780 LDL 782 (858)
Q Consensus 780 L~L 782 (858)
|++
T Consensus 565 L~l 567 (567)
T 1dce_A 565 ILT 567 (567)
T ss_dssp EEC
T ss_pred cCC
Confidence 864
No 127
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.35 E-value=3.3e-12 Score=127.13 Aligned_cols=150 Identities=19% Similarity=0.286 Sum_probs=90.2
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCc-ccccCCCCcEEeccccccccccchhhhccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPS-CIAKLQRLQTLDISGNMAFMELPREICELKEL 639 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L 639 (858)
+.++++++. +. .+|..+. ++|+.|++++|.++.+|. .|..+++|++|+|++|.+....|..|
T Consensus 14 ~~v~c~~~~-------l~--~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~------ 76 (220)
T 2v9t_B 14 NIVDCRGKG-------LT--EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF------ 76 (220)
T ss_dssp TEEECTTSC-------CS--SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTT------
T ss_pred CEEEcCCCC-------cC--cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh------
Confidence 567777777 66 7877664 688888888888887765 67888888888888885544444433
Q ss_pred cccccccccccCCCCCccccccceeecccccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCcccc
Q 037627 640 RHLIGNFTGTLNIENLSNLQTLKYVERGSWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFD 719 (858)
Q Consensus 640 ~~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 719 (858)
.++++|++|++++|...... + ..+..+++|+.|+|++|.+..+
T Consensus 77 -------------~~l~~L~~L~Ls~N~l~~l~----------------------~-~~f~~l~~L~~L~L~~N~l~~~- 119 (220)
T 2v9t_B 77 -------------QGLRSLNSLVLYGNKITELP----------------------K-SLFEGLFSLQLLLLNANKINCL- 119 (220)
T ss_dssp -------------TTCSSCCEEECCSSCCCCCC----------------------T-TTTTTCTTCCEEECCSSCCCCC-
T ss_pred -------------hCCcCCCEEECCCCcCCccC----------------------H-hHccCCCCCCEEECCCCCCCEe-
Confidence 34455555555555433222 1 3344455555555555544433
Q ss_pred CCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCC
Q 037627 720 SLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLK 764 (858)
Q Consensus 720 ~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~ 764 (858)
....+..+++|+.|+|++| +..++...+..+++|+.|+|++|.+.
T Consensus 120 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 120 RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 2334555555666666554 44444443333566677777766654
No 128
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.31 E-value=2.3e-11 Score=123.66 Aligned_cols=201 Identities=14% Similarity=0.154 Sum_probs=119.4
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
..++||+.+++.+..++..+. ..+.+.|+|++|+||||||+.+++. ....+.... .... .. .....+.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~~~-~~~~---~~-~~~~~~~~~~~ 94 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKG--LNCETGITA-TPCG---VC-DNCREIEQGRF 94 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHH--HHCTTCSCS-SCCS---CS-HHHHHHHTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCC-CCCc---cc-HHHHHHhccCC
Confidence 469999999999999987653 2358899999999999999999873 222110000 0000 00 00111111000
Q ss_pred cccc-chhhhhccHHHHHHHHHHH----hcCceEEEEEEcCCC--hhhHHHHHhhCCCCCCCcEEEEEeCchhH-HhhcC
Q 037627 256 INVL-TRELEEMREEDLERYLHNC----LQGKSYLVVVDDAWQ--KETWESLKRAFPDNKNGSRVIITTRIKEV-AERSD 327 (858)
Q Consensus 256 ~~~~-~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~--~~~~~~l~~~l~~~~~gs~ilvTtR~~~~-~~~~~ 327 (858)
.... .........+.+...+... ..+++.+||+||++. ...+..+...+.....+..+|+||+.... .....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~ 174 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 174 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHH
T ss_pred cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHH
Confidence 0000 0000001112222222211 135679999999975 34566776666555567888888876532 11111
Q ss_pred CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhHh
Q 037627 328 ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVLGGLL 386 (858)
Q Consensus 328 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l 386 (858)
.....+.+.+++.++..+++...+....... .++....|++.|+|+|..+..+...+
T Consensus 175 ~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 175 SRCLQFHLKALDVEQIRHQLEHILNEEHIAH--EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHTTCCB--CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhhccCCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1226899999999999999998775433221 24567899999999999888776543
No 129
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.30 E-value=7.7e-12 Score=124.44 Aligned_cols=150 Identities=20% Similarity=0.215 Sum_probs=90.6
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCc--ccccCCCCcEEeccccccccccchhhhcccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPS--CIAKLQRLQTLDISGNMAFMELPREICELKE 638 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~--~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~ 638 (858)
+.++++++. ++ .+|..+. ..+++|+|++|.++.++. .|.++++|++|+|++|.+.+..|..
T Consensus 14 ~~l~~s~n~-------l~--~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~------ 76 (220)
T 2v70_A 14 TTVDCSNQK-------LN--KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA------ 76 (220)
T ss_dssp TEEECCSSC-------CS--SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTT------
T ss_pred CEeEeCCCC-------cc--cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHH------
Confidence 567777777 66 7776654 356788888888887732 3677888888888888433322222
Q ss_pred ccccccccccccCCCCCccccccceeecccccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccc
Q 037627 639 LRHLIGNFTGTLNIENLSNLQTLKYVERGSWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCF 718 (858)
Q Consensus 639 L~~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 718 (858)
+..+++|++|++++|... ...+ ..+..+++|+.|++++|.+..+
T Consensus 77 -------------~~~l~~L~~L~Ls~N~l~----------------------~~~~-~~~~~l~~L~~L~Ls~N~l~~~ 120 (220)
T 2v70_A 77 -------------FEGASGVNEILLTSNRLE----------------------NVQH-KMFKGLESLKTLMLRSNRITCV 120 (220)
T ss_dssp -------------TTTCTTCCEEECCSSCCC----------------------CCCG-GGGTTCSSCCEEECTTSCCCCB
T ss_pred -------------hCCCCCCCEEECCCCccC----------------------ccCH-hHhcCCcCCCEEECCCCcCCeE
Confidence 333444555555554432 2222 4556666666666666665544
Q ss_pred cCCCCCCCCCCccEEEeccc-CCCC-ChhhhhccCCccEEEEecccCCC
Q 037627 719 DSLQPLSDCSYLIDLRLSGK-IEKL-PEDLHEVLPNLECLSLKKSHLKE 765 (858)
Q Consensus 719 ~~~~~l~~l~~L~~L~l~~~-~~~~-p~~~~~~l~~L~~L~L~~n~l~~ 765 (858)
....+..+++|+.|+|++| +..+ |..+.. +++|+.|+|++|.+.+
T Consensus 121 -~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 121 -GNDSFIGLSSVRLLSLYDNQITTVAPGAFDT-LHSLSTLNLLANPFNC 167 (220)
T ss_dssp -CTTSSTTCTTCSEEECTTSCCCCBCTTTTTT-CTTCCEEECCSCCEEC
T ss_pred -CHhHcCCCccCCEEECCCCcCCEECHHHhcC-CCCCCEEEecCcCCcC
Confidence 2344566667777777765 5554 334443 5777777777777654
No 130
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.30 E-value=3.6e-12 Score=137.51 Aligned_cols=174 Identities=21% Similarity=0.215 Sum_probs=121.4
Q ss_pred cceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhccccccccccccccccCCC-CCccccccceeeccccc
Q 037627 592 LKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGNFTGTLNIE-NLSNLQTLKYVERGSWA 670 (858)
Q Consensus 592 L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~-~l~~L~~L~l~~~~~~~ 670 (858)
-++++++++.++.+|..+. ..++.|+|++|. +..+|... +. .+++|+.|++++|.
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~-l~~l~~~~------------------~~~~l~~L~~L~L~~N~--- 75 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNN-LSRLRAEW------------------TPTRLTNLHSLLLSHNH--- 75 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSSC-CCEECTTS------------------SSSCCTTCCEEECCSSC---
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCCC-CCccChhh------------------hhhcccccCEEECCCCc---
Confidence 3689999999999998764 468999999994 44343311 22 34455555555443
Q ss_pred ccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhc
Q 037627 671 EINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEV 749 (858)
Q Consensus 671 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~ 749 (858)
.....+ ..+..+++|+.|+|++|.+..+ ....+..+++|+.|+|++| +..++...+..
T Consensus 76 -------------------i~~i~~-~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~ 134 (361)
T 2xot_A 76 -------------------LNFISS-EAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQALEVLLLYNNHIVVVDRNAFED 134 (361)
T ss_dssp -------------------CCEECT-TTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred -------------------CCccCh-hhccCCCCCCEEECCCCcCCcC-CHHHhCCCcCCCEEECCCCcccEECHHHhCC
Confidence 333333 6778889999999999987765 3445788999999999996 66554443444
Q ss_pred cCCccEEEEecccCCCCCcccc---CCCCCCCeeEeeccccCCceEEECCCCccc--cceeeecCCC
Q 037627 750 LPNLECLSLKKSHLKEDPMPKL---EKLPNLTILDLGLKSYGGKKMICTTKGFHL--LEILQLIDLN 811 (858)
Q Consensus 750 l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~--L~~L~l~~~~ 811 (858)
+++|+.|+|++|.++..++..+ ..+++|+.|+|++|.++..... ....++. |+.|++.+++
T Consensus 135 l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~-~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 135 MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT-DLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHH-HHHHSCHHHHTTEECCSSC
T ss_pred cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHH-HhhhccHhhcceEEecCCC
Confidence 7999999999999987766666 6799999999999998753210 1122343 4778887744
No 131
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.24 E-value=1e-10 Score=116.91 Aligned_cols=184 Identities=15% Similarity=0.099 Sum_probs=114.3
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCc-ceEEEEEeCCCCCHHHHHHHHHHh
Q 037627 175 EGNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKF-DRCAWVSVSQDYDTKDLLLRIIRS 253 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~ 253 (858)
...++||+..++++.+++.... .+.+.|+|++|+|||++|+.+++... ...+ ...+.++.+.......+... +..
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 91 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHK-IKE 91 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHH-HHH
T ss_pred HHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHH-HHH
Confidence 3568999999999999997654 33489999999999999999987311 1112 12333443333222211111 111
Q ss_pred ccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCchhH-HhhcCCCC
Q 037627 254 FKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRIKEV-AERSDENA 330 (858)
Q Consensus 254 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~~-~~~~~~~~ 330 (858)
..... ....+++.+||+||++.. ...+.+...+.....+.++|+||+.... ........
T Consensus 92 ~~~~~------------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~ 153 (226)
T 2chg_A 92 FARTA------------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (226)
T ss_dssp HHTSC------------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred Hhccc------------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhC
Confidence 00000 001257889999999864 3445555555444557788888876531 11111122
Q ss_pred ceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 037627 331 YAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVL 382 (858)
Q Consensus 331 ~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 382 (858)
..+.+.+++.++..+++.+.+...... ..++....|++.++|+|..+..+
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 578999999999999999876432222 11456788999999999865544
No 132
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.19 E-value=5.6e-11 Score=119.01 Aligned_cols=132 Identities=17% Similarity=0.112 Sum_probs=103.5
Q ss_pred cccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCcc
Q 037627 676 KLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLE 754 (858)
Q Consensus 676 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~ 754 (858)
..++|+.|++++|......+ ..+..+++|+.|+|++|.+..+ ....+..+++|+.|+|++| +..+|...+..+++|+
T Consensus 38 ~~~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 115 (229)
T 3e6j_A 38 IPTNAQILYLHDNQITKLEP-GVFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK 115 (229)
T ss_dssp CCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCCEEEcCCCccCccCH-HHhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCCCcCCccChhHhCcchhhC
Confidence 34788888888888777666 7888899999999999887654 3345678899999999986 7777776655579999
Q ss_pred EEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECCCCccccceeeecCCC
Q 037627 755 CLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLN 811 (858)
Q Consensus 755 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~ 811 (858)
.|+|++|.++ .+|..+..+++|+.|+|++|.++.... .....+++|+.|++.+++
T Consensus 116 ~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 116 ELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp EEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSC
T ss_pred eEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCC
Confidence 9999999987 567788899999999999998875321 223567888888888754
No 133
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.18 E-value=5.5e-11 Score=112.81 Aligned_cols=132 Identities=20% Similarity=0.202 Sum_probs=76.1
Q ss_pred CcccceEeccCCccc--ccCcccccCCCCcEEeccccccccccchhhhccccccccccccccccCCCCCccccccceeec
Q 037627 589 LVNLKYLRLTNAHID--VIPSCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGNFTGTLNIENLSNLQTLKYVER 666 (858)
Q Consensus 589 l~~L~~L~L~~n~i~--~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~~~ 666 (858)
.++|++|++++|.++ .+|..+..+++|++|++++|.+ ..+ . .+..+++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l-~~~-~-------------------~~~~l~~L-------- 73 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-ISV-S-------------------NLPKLPKL-------- 73 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC-CCC-S-------------------SCCCCSSC--------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC-CCh-h-------------------hhccCCCC--------
Confidence 467888888888887 7777777888888888888732 222 1 12333444
Q ss_pred ccccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEecccCCCCChhh
Q 037627 667 GSWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGKIEKLPEDL 746 (858)
Q Consensus 667 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~p~~~ 746 (858)
+.|++++|.....++ ..+..+++|+.|++++|.+..++.+..+..+
T Consensus 74 --------------~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l------------------- 119 (168)
T 2ell_A 74 --------------KKLELSENRIFGGLD-MLAEKLPNLTHLNLSGNKLKDISTLEPLKKL------------------- 119 (168)
T ss_dssp --------------CEEEEESCCCCSCCC-HHHHHCTTCCEEECBSSSCCSSGGGGGGSSC-------------------
T ss_pred --------------CEEECcCCcCchHHH-HHHhhCCCCCEEeccCCccCcchhHHHHhcC-------------------
Confidence 444444444333334 5566678888888887765544222333333
Q ss_pred hhccCCccEEEEecccCCCCCc---cccCCCCCCCeeEeecccc
Q 037627 747 HEVLPNLECLSLKKSHLKEDPM---PKLEKLPNLTILDLGLKSY 787 (858)
Q Consensus 747 ~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~n~~ 787 (858)
++|+.|+|++|.+++.++ ..+..+++|+.|++++|.+
T Consensus 120 ----~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 120 ----ECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp ----SCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ----CCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 555555555555543333 2455555555555555544
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.16 E-value=8.4e-11 Score=114.11 Aligned_cols=68 Identities=18% Similarity=0.190 Sum_probs=47.2
Q ss_pred hhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEecccCCCCChh-hhhccCCccEEEEecccCCCCCccccCCCC
Q 037627 697 KSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGKIEKLPED-LHEVLPNLECLSLKKSHLKEDPMPKLEKLP 775 (858)
Q Consensus 697 ~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~p~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 775 (858)
..+..+++|+.|++++|.+..+ +.. +.. +++|+.|+|++|++++..|..+..++
T Consensus 72 ~~~~~l~~L~~L~Ls~N~l~~~------------------------~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~ 126 (192)
T 1w8a_A 72 NAFEGASHIQELQLGENKIKEI------------------------SNKMFLG-LHQLKTLNLYDNQISCVMPGSFEHLN 126 (192)
T ss_dssp TTTTTCTTCCEEECCSCCCCEE------------------------CSSSSTT-CTTCCEEECCSSCCCEECTTSSTTCT
T ss_pred hHcCCcccCCEEECCCCcCCcc------------------------CHHHhcC-CCCCCEEECCCCcCCeeCHHHhhcCC
Confidence 4555666677777766654432 222 233 57888888888888777777888888
Q ss_pred CCCeeEeeccccCC
Q 037627 776 NLTILDLGLKSYGG 789 (858)
Q Consensus 776 ~L~~L~L~~n~~~~ 789 (858)
+|+.|+|++|.+..
T Consensus 127 ~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 127 SLTSLNLASNPFNC 140 (192)
T ss_dssp TCCEEECTTCCBCC
T ss_pred CCCEEEeCCCCccC
Confidence 88888888887764
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.13 E-value=9.6e-11 Score=124.64 Aligned_cols=197 Identities=15% Similarity=0.134 Sum_probs=131.9
Q ss_pred CcccceEeccCCcccccCc-ccccCCCCcEEeccccccccccchhhhcccccccccccc---------ccccCCCCCccc
Q 037627 589 LVNLKYLRLTNAHIDVIPS-CIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGNF---------TGTLNIENLSNL 658 (858)
Q Consensus 589 l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~---------~~~~~~~~l~~L 658 (858)
|++|+.|+|++ .++.|+. .|.++++|+.|++++|.....-+..|..+.++..+.... .....+.++.+|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 99999999999 8888864 588899999999999955555556677777676662211 011123344444
Q ss_pred c-ccceeeccccccc---CcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEE
Q 037627 659 Q-TLKYVERGSWAEI---NPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLR 734 (858)
Q Consensus 659 ~-~L~l~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 734 (858)
+ .+.+......... .--...++..+.+.++-...... .....+++|+.++++.|....+ ....|..+++|+.++
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~-~l~~~~~~L~~l~L~~n~i~~I-~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFK-LIRDYMPNLVSLDISKTNATTI-PDFTFAQKKYLLKIK 256 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHH-HHHHHCTTCCEEECTTBCCCEE-CTTTTTTCTTCCEEE
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHH-HHHHhcCCCeEEECCCCCccee-cHhhhhCCCCCCEEE
Confidence 4 2222211110000 01124556666666543222222 2223488999999998877766 445688899999999
Q ss_pred ecccCCCCChhhhhccCCcc-EEEEecccCCCCCccccCCCCCCCeeEeeccccCC
Q 037627 735 LSGKIEKLPEDLHEVLPNLE-CLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGG 789 (858)
Q Consensus 735 l~~~~~~~p~~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 789 (858)
+.+++..++...+..+++|+ .|+|.+ .++...+.+|.+|++|+.|+++.|.++.
T Consensus 257 l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 257 LPHNLKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred CCcccceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence 99988888888777789999 999988 6776777889999999999998887753
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.12 E-value=1.4e-10 Score=112.61 Aligned_cols=122 Identities=19% Similarity=0.170 Sum_probs=73.9
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCcc--cccCCCCcEEeccccccccccchhhhcccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPSC--IAKLQRLQTLDISGNMAFMELPREICELKE 638 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~~--l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~ 638 (858)
++++++++. ++ .+|..+.. +|++|++++|.++.+|.. +.++++|++|+|++|.+.+..|..|.
T Consensus 11 ~~l~~s~~~-------l~--~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---- 75 (192)
T 1w8a_A 11 TTVDCTGRG-------LK--EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE---- 75 (192)
T ss_dssp TEEECTTSC-------CS--SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT----
T ss_pred CEEEcCCCC-------cC--cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcC----
Confidence 678888888 76 88876654 899999999999888754 78899999999999965555455443
Q ss_pred ccccccccccccCCCCCccccccceeecccccccC--cccccCCCeeEEeecccccccchhhhhcCCCCCeEEeecc
Q 037627 639 LRHLIGNFTGTLNIENLSNLQTLKYVERGSWAEIN--PEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLS 713 (858)
Q Consensus 639 L~~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 713 (858)
.+++|+.|++++|......+ +..+++|+.|++.+|......+ ..+..+++|+.|++++|
T Consensus 76 ---------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 76 ---------------GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASN 136 (192)
T ss_dssp ---------------TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTC
T ss_pred ---------------CcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH-HHhhcCCCCCEEEeCCC
Confidence 44455555566555333221 2333444444444443333333 33444444444444433
No 137
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.12 E-value=8.2e-11 Score=111.62 Aligned_cols=109 Identities=27% Similarity=0.220 Sum_probs=80.2
Q ss_pred cccCCCeeEEeecccc-cccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCC-CChhhhhccCC
Q 037627 676 KLVNLRDLRIISKYQE-EEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEK-LPEDLHEVLPN 752 (858)
Q Consensus 676 ~l~~L~~L~l~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~-~p~~~~~~l~~ 752 (858)
..++|+.|++.+|... ..++ ..+..+++|+.|++++|.+... ..+..+++|+.|++++| +.. +|..+.. +++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~-~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~ 96 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIE-GLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEK-LPN 96 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCS-SCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHH-CTT
T ss_pred CcccCCEEECCCCCCChhhHH-HHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhh-CCC
Confidence 3466777777777654 3445 5577888888888888876643 66777888888888886 555 5555444 688
Q ss_pred ccEEEEecccCCCCC-ccccCCCCCCCeeEeeccccCC
Q 037627 753 LECLSLKKSHLKEDP-MPKLEKLPNLTILDLGLKSYGG 789 (858)
Q Consensus 753 L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~~~~ 789 (858)
|+.|+|++|.+++.. +..+..+++|+.|++++|.+++
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~ 134 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN 134 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT
T ss_pred CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc
Confidence 999999988887643 2678888888888888888765
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.10 E-value=1.2e-11 Score=145.49 Aligned_cols=153 Identities=20% Similarity=0.148 Sum_probs=85.3
Q ss_pred CccccccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhccccccccccccccccCCCCCccccc
Q 037627 581 NLPEEMVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGNFTGTLNIENLSNLQT 660 (858)
Q Consensus 581 ~lp~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~ 660 (858)
..|..+..+.+|++|+|++|.+..+|..+.++++|++|+|++|. +..+|..|+.| ++|+.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l-------------------~~L~~ 274 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNL-------------------SNLRV 274 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGG-------------------TTCCE
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCC-------------------CCCCE
Confidence 34556667777777777777777777777777777777777773 33555544332 23333
Q ss_pred cceeecccccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-C
Q 037627 661 LKYVERGSWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-I 739 (858)
Q Consensus 661 L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~ 739 (858)
|++ ++|... .+| ..++.+++|+.|+|++|.+..+ ...+..+++|+.|+|++| +
T Consensus 275 L~L----------------------s~N~l~-~lp-~~~~~l~~L~~L~L~~N~l~~l--p~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 275 LDL----------------------SHNRLT-SLP-AELGSCFQLKYFYFFDNMVTTL--PWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp EEC----------------------TTSCCS-SCC-SSGGGGTTCSEEECCSSCCCCC--CSSTTSCTTCCCEECTTSCC
T ss_pred EeC----------------------cCCcCC-ccC-hhhcCCCCCCEEECCCCCCCcc--ChhhhcCCCccEEeCCCCcc
Confidence 333 333333 334 6677888899999988877644 234778888888888886 4
Q ss_pred CC-CChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeecc
Q 037627 740 EK-LPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLK 785 (858)
Q Consensus 740 ~~-~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 785 (858)
.. +|..+......+..|+|++|.+++.+|. .|+.|+++.|
T Consensus 329 ~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 329 EKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred CCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 43 3444433212233467888888766654 4556666655
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.09 E-value=3.7e-11 Score=141.30 Aligned_cols=97 Identities=26% Similarity=0.296 Sum_probs=74.3
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhcccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELR 640 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~ 640 (858)
++|+|++|. +. .+|..+.++++|++|+|++|.|+.+|..|.++++|++|+|++|. +..+|..|+.|++|+
T Consensus 227 ~~L~Ls~n~-------l~--~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 227 HALDLSNLQ-------IF--NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLK 296 (727)
T ss_dssp CEEECTTSC-------CS--CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCS
T ss_pred cEEECCCCC-------CC--CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCC
Confidence 899999999 77 89999999999999999999999999999999999999999995 448888777777666
Q ss_pred ccc---cccc-cccCCCCCccccccceeecc
Q 037627 641 HLI---GNFT-GTLNIENLSNLQTLKYVERG 667 (858)
Q Consensus 641 ~L~---~~~~-~~~~~~~l~~L~~L~l~~~~ 667 (858)
+|+ |.+. .+..++.+++|+.|++++|.
T Consensus 297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp EEECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred EEECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence 662 2221 12234444444444444444
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.09 E-value=5e-10 Score=108.59 Aligned_cols=68 Identities=22% Similarity=0.332 Sum_probs=44.3
Q ss_pred hhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEecccCCCCChhhhhccCCccEEEEecccCCCCCccccCCCCC
Q 037627 697 KSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGKIEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPN 776 (858)
Q Consensus 697 ~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 776 (858)
..+..+++|+.|+|++|.+..+ +...+..+++|+.|+|++|.++..++..|..+++
T Consensus 72 ~~f~~l~~L~~L~Ls~N~l~~i------------------------~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 127 (193)
T 2wfh_A 72 QSFSNMTQLLTLILSYNRLRCI------------------------PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA 127 (193)
T ss_dssp TTTTTCTTCCEEECCSSCCCBC------------------------CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred hHccCCCCCCEEECCCCccCEe------------------------CHHHhCCCCCCCEEECCCCCCCeeChhhhhcCcc
Confidence 4455666666777766654432 2222222577777788888777666667777888
Q ss_pred CCeeEeeccccC
Q 037627 777 LTILDLGLKSYG 788 (858)
Q Consensus 777 L~~L~L~~n~~~ 788 (858)
|+.|+|++|.+.
T Consensus 128 L~~L~L~~N~~~ 139 (193)
T 2wfh_A 128 LSHLAIGANPLY 139 (193)
T ss_dssp CCEEECCSSCEE
T ss_pred ccEEEeCCCCee
Confidence 888888887764
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.09 E-value=2.9e-10 Score=110.26 Aligned_cols=56 Identities=18% Similarity=0.257 Sum_probs=45.0
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCcccccCCCCcEEecccccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFM 627 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~ 627 (858)
++++++++. +. .+|..+. ++|++|+|++|.++.+|..+.++++|++|+|++|.+..
T Consensus 13 ~~l~~~~~~-------l~--~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~ 68 (193)
T 2wfh_A 13 TVVRCSNKG-------LK--VLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST 68 (193)
T ss_dssp TEEECTTSC-------CS--SCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCC
T ss_pred CEEEcCCCC-------CC--cCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCE
Confidence 567888877 76 7887654 58899999999998888888889999999999885443
No 142
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.07 E-value=1e-10 Score=108.43 Aligned_cols=124 Identities=19% Similarity=0.146 Sum_probs=86.9
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhcccccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELR 640 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~ 640 (858)
+.|++++|. +..+.+|..+..+++|++|++++|.++.+ ..+.++++|++|++++|.+.+.+|..+..+++|+
T Consensus 20 ~~L~l~~n~-------l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 20 KELVLDNSR-------SNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp SEEECTTCB-------CBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred eEEEccCCc-------CChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 788899888 55347888889999999999999999988 6788999999999999966555777665555555
Q ss_pred ccccccccccCCCCCccccccceeecccccc---cCcccccCCCeeEEeecccccccc--hhhhhcCCCCCeEEee
Q 037627 641 HLIGNFTGTLNIENLSNLQTLKYVERGSWAE---INPEKLVNLRDLRIISKYQEEEFS--FKSIAYLKNLQLLSIR 711 (858)
Q Consensus 641 ~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~l~~L~~L~l~ 711 (858)
+| ++++|..... ..+..+++|+.|++.+|......+ ...+..+++|+.|+++
T Consensus 92 ~L-------------------~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HL-------------------NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EE-------------------ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EE-------------------ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 54 4445543322 234556666677776665433322 1356777888877764
No 143
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.05 E-value=1.4e-10 Score=107.54 Aligned_cols=129 Identities=20% Similarity=0.212 Sum_probs=79.6
Q ss_pred CCcccceEeccCCccc--ccCcccccCCCCcEEeccccccccccchhhhccccccccccccccccCCCCCccccccceee
Q 037627 588 KLVNLKYLRLTNAHID--VIPSCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGNFTGTLNIENLSNLQTLKYVE 665 (858)
Q Consensus 588 ~l~~L~~L~L~~n~i~--~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~l~~ 665 (858)
..++|+.|++++|.++ .+|..+..+++|++|++++|.+. .+ . .++.+++|+.|++++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~-~-------------------~~~~l~~L~~L~Ls~ 73 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-A-------------------NLPKLNKLKKLELSD 73 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC-T-------------------TCCCCTTCCEEECCS
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc-h-------------------hhhcCCCCCEEECCC
Confidence 3478999999999998 88888899999999999998432 22 1 233445555555554
Q ss_pred cccccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEecccCCCCChh
Q 037627 666 RGSWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGKIEKLPED 745 (858)
Q Consensus 666 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~p~~ 745 (858)
|. ....++ ..+..+++|+.|++++|.+...+.+ ..
T Consensus 74 n~----------------------i~~~~~-~~~~~l~~L~~L~ls~N~i~~~~~~----------------------~~ 108 (149)
T 2je0_A 74 NR----------------------VSGGLE-VLAEKCPNLTHLNLSGNKIKDLSTI----------------------EP 108 (149)
T ss_dssp SC----------------------CCSCTH-HHHHHCTTCCEEECTTSCCCSHHHH----------------------GG
T ss_pred Cc----------------------ccchHH-HHhhhCCCCCEEECCCCcCCChHHH----------------------HH
Confidence 43 332233 5556677777777777655432111 22
Q ss_pred hhhccCCccEEEEecccCCCCCc---cccCCCCCCCeeEee
Q 037627 746 LHEVLPNLECLSLKKSHLKEDPM---PKLEKLPNLTILDLG 783 (858)
Q Consensus 746 ~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~ 783 (858)
+.. +++|+.|++++|.+++.++ ..+..+++|+.|+++
T Consensus 109 ~~~-l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 109 LKK-LENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp GGG-CTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred Hhh-CCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 233 4566666666666554443 355666666666654
No 144
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.04 E-value=7.4e-10 Score=117.57 Aligned_cols=183 Identities=18% Similarity=0.204 Sum_probs=112.9
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccC-Cc-ceEEEEEeCCCCCHHHHHHHHHHh
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKN-KF-DRCAWVSVSQDYDTKDLLLRIIRS 253 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~-~f-~~~~wv~~~~~~~~~~~~~~i~~~ 253 (858)
+.++|++..++.+..++..+. .+.+.|+|++|+||||+|+.+++. ... .+ ..+++++.+..... ..+++++..
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~ 95 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHE--LLGRSYADGVLELNASDDRGI-DVVRNQIKH 95 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHH--HHGGGHHHHEEEECTTSCCSH-HHHHTHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCCEEEecCccccCh-HHHHHHHHH
Confidence 569999999999999987654 233899999999999999999873 211 12 12344443332221 111222211
Q ss_pred ccccccchhhhhccHHHHHHHHHHHh-cCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCchh-HHhhcCCC
Q 037627 254 FKINVLTRELEEMREEDLERYLHNCL-QGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRIKE-VAERSDEN 329 (858)
Q Consensus 254 l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~-~~~~~~~~ 329 (858)
+.... ..+ .+++.++|+||++.. ..+..+...+.....++.+|+||+... +.......
T Consensus 96 ~~~~~------------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr 157 (323)
T 1sxj_B 96 FAQKK------------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ 157 (323)
T ss_dssp HHHBC------------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred HHhcc------------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhh
Confidence 11000 011 346889999999864 334444444444445678888886643 11111122
Q ss_pred CceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHH-HHHHH
Q 037627 330 AYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLA-IVVLG 383 (858)
Q Consensus 330 ~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pla-i~~~~ 383 (858)
...+.+.+++.++..+++...+....... .++.+..|++.++|.|.. +..+.
T Consensus 158 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 158 CAILRYSKLSDEDVLKRLLQIIKLEDVKY--TNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ceEEeecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 25899999999999999988764322211 145678899999999954 44443
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.04 E-value=3.7e-10 Score=120.09 Aligned_cols=100 Identities=15% Similarity=0.074 Sum_probs=75.2
Q ss_pred CCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCC-eeEeeccccCCceEEECCCCccccce
Q 037627 727 CSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLT-ILDLGLKSYGGKKMICTTKGFHLLEI 804 (858)
Q Consensus 727 l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~L~~n~~~~~~~~~~~~~~~~L~~ 804 (858)
+++|+.++|++| +..+|...+..+++|+.|+|.+| +......+|.++++|+ .+++.+ .++... ......+++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~-~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIE-FGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEEC-TTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEc-hhhhhCCccCCE
Confidence 789999999995 88899988888999999999998 7777888999999999 999986 443210 112345678888
Q ss_pred eeecCCCCCCeEEE-ccCcccccccee
Q 037627 805 LQLIDLNDLAQWQV-EDGAMPILRGLR 830 (858)
Q Consensus 805 L~l~~~~~l~~~~~-~~~~l~~L~~L~ 830 (858)
|++.+ +.++.++. .+..+++|+.++
T Consensus 302 l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred EEeCC-CccCccchhhhcCCcchhhhc
Confidence 88865 45666643 234566777664
No 146
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.02 E-value=3.4e-10 Score=108.18 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=29.1
Q ss_pred cccCCcccceEeccCCcccccCcccccCC-CCcEEeccccc
Q 037627 585 EMVKLVNLKYLRLTNAHIDVIPSCIAKLQ-RLQTLDISGNM 624 (858)
Q Consensus 585 ~~~~l~~L~~L~L~~n~i~~lp~~l~~l~-~L~~L~L~~n~ 624 (858)
.+.++.+|+.|++++|.++.+|. +..+. +|++|++++|.
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~ 53 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE 53 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC
T ss_pred hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCC
Confidence 45667788888888888887764 44444 88888888883
No 147
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.02 E-value=1e-09 Score=105.05 Aligned_cols=111 Identities=19% Similarity=0.200 Sum_probs=71.5
Q ss_pred ccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccE
Q 037627 677 LVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLEC 755 (858)
Q Consensus 677 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~ 755 (858)
.++|+.|++.+|......+ ..+..+++|+.|++++|.+..+ ....+..+++|+.|++++| +..+|...+..+++|+.
T Consensus 27 ~~~l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 104 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPH-GVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKE 104 (177)
T ss_dssp CTTCSEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEEeCCCcccEeCH-HHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCCccccCHHHhhCCcccCE
Confidence 3567777777766554433 5566777777777777765543 2233566777777777775 55566554333577777
Q ss_pred EEEecccCCCCCccccCCCCCCCeeEeeccccCC
Q 037627 756 LSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGG 789 (858)
Q Consensus 756 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 789 (858)
|+|++|.+++.++..+..+++|+.|+|++|.+.+
T Consensus 105 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 105 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 7777777766555556677777777777776654
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.00 E-value=3e-11 Score=118.05 Aligned_cols=113 Identities=20% Similarity=0.176 Sum_probs=75.0
Q ss_pred CccccccCCcccceEeccCCcccccCcccccCCCCcEEeccccccccccchhhhccccccccccccccccCCCCCccccc
Q 037627 581 NLPEEMVKLVNLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIGNFTGTLNIENLSNLQT 660 (858)
Q Consensus 581 ~lp~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~ 660 (858)
.+|..+..+++|++|++++|.++.+| .+.++++|++|++++| .+..+|..+..+++|++|
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L------------------ 98 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEEL------------------ 98 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEE------------------
T ss_pred hhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEE------------------
Confidence 77779999999999999999999998 8999999999999999 455777766555555555
Q ss_pred cceeecccccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccC
Q 037627 661 LKYVERGSWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSD 714 (858)
Q Consensus 661 L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 714 (858)
++++|.......+..+++|+.|++.+|..........+..+++|+.|++++|.
T Consensus 99 -~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 99 -WISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp -EEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred -ECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 44444433333344455555555555543332211345555556666655553
No 149
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.94 E-value=8.3e-10 Score=105.44 Aligned_cols=123 Identities=15% Similarity=0.176 Sum_probs=79.1
Q ss_pred eeeeccCCccccccccCCCCCccccccCCc-ccceEeccCCcccccCcccccCCCCcEEeccccccccccchhh-hcccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLV-NLKYLRLTNAHIDVIPSCIAKLQRLQTLDISGNMAFMELPREI-CELKE 638 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~-~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~lp~~~-~~l~~ 638 (858)
+.|++++|. +. .+|. +..+. +|++|++++|.++.+ ..+..+++|++|++++|. +..+|..+ ..+
T Consensus 22 ~~L~l~~n~-------l~--~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l-- 87 (176)
T 1a9n_A 22 RELDLRGYK-------IP--VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQAL-- 87 (176)
T ss_dssp EEEECTTSC-------CC--SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHC--
T ss_pred eEEEeeCCC-------Cc--hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcC--
Confidence 788999988 76 6754 44444 999999999999988 578899999999999994 44555433 444
Q ss_pred ccccccccccccCCCCCccccccceeeccccccc---CcccccCCCeeEEeecccccccc--hhhhhcCCCCCeEEeecc
Q 037627 639 LRHLIGNFTGTLNIENLSNLQTLKYVERGSWAEI---NPEKLVNLRDLRIISKYQEEEFS--FKSIAYLKNLQLLSIRLS 713 (858)
Q Consensus 639 L~~L~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~l~~L~~L~l~~~ 713 (858)
++|+.|++++|...... .+..+++|+.|++.+|....... ...+..+++|+.|+++.|
T Consensus 88 -----------------~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 88 -----------------PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp -----------------TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred -----------------CCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 44445555555533222 23455666666666665432211 013666777777776665
Q ss_pred C
Q 037627 714 D 714 (858)
Q Consensus 714 ~ 714 (858)
.
T Consensus 151 ~ 151 (176)
T 1a9n_A 151 K 151 (176)
T ss_dssp C
T ss_pred C
Confidence 3
No 150
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.94 E-value=2.8e-09 Score=101.94 Aligned_cols=67 Identities=15% Similarity=0.248 Sum_probs=35.8
Q ss_pred hhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCC
Q 037627 699 IAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKED 766 (858)
Q Consensus 699 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~ 766 (858)
+..+++|+.|++++|.+..+ ....+..+++|+.|++++| +..+|...+..+++|+.|+|++|.+.+.
T Consensus 72 ~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 72 FDKLTKLTILYLHENKLQSL-PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp TTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccCCCccCEEECCCCCcccc-CHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 34444555555555444432 1222445555666666654 4555555444357777777777776543
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.94 E-value=8e-09 Score=112.17 Aligned_cols=194 Identities=11% Similarity=0.132 Sum_probs=131.9
Q ss_pred ccCCcccceEeccCCcccccC-cccccCCCCcEEeccccccccccchhhhcccccccccc--cc--ccccCCCCCccccc
Q 037627 586 MVKLVNLKYLRLTNAHIDVIP-SCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIG--NF--TGTLNIENLSNLQT 660 (858)
Q Consensus 586 ~~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~--~~--~~~~~~~~l~~L~~ 660 (858)
|.++ +|+.+.+.+ .++.++ ..|.++++|+.+++++| .+..+|.......+|+.+.. +. .+...|.++++|+.
T Consensus 154 F~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~ 230 (401)
T 4fdw_A 154 FFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKT 230 (401)
T ss_dssp TTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCC
T ss_pred cCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCE
Confidence 4443 577777775 566664 45677777888888777 44555544333566666622 11 22336777888888
Q ss_pred cceeecc-cccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCc-----cccCCCCCCCCCCccEEE
Q 037627 661 LKYVERG-SWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDT-----CFDSLQPLSDCSYLIDLR 734 (858)
Q Consensus 661 L~l~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~~l~~l~~L~~L~ 734 (858)
+.+..+- ......+.. .+|+.+.+.++ ...... .++.++++|+.+.+..+... .+ ....|..|++|+.+.
T Consensus 231 l~l~~~l~~I~~~aF~~-~~L~~i~lp~~-i~~I~~-~aF~~c~~L~~l~l~~~~~~~~~~~~I-~~~aF~~c~~L~~l~ 306 (401)
T 4fdw_A 231 IEIPENVSTIGQEAFRE-SGITTVKLPNG-VTNIAS-RAFYYCPELAEVTTYGSTFNDDPEAMI-HPYCLEGCPKLARFE 306 (401)
T ss_dssp EECCTTCCEECTTTTTT-CCCSEEEEETT-CCEECT-TTTTTCTTCCEEEEESSCCCCCTTCEE-CTTTTTTCTTCCEEC
T ss_pred EecCCCccCcccccccc-CCccEEEeCCC-ccEECh-hHhhCCCCCCEEEeCCccccCCcccEE-CHHHhhCCccCCeEE
Confidence 8776542 122222334 67888888432 333333 78889999999999876543 22 345688899999999
Q ss_pred ecccCCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccC
Q 037627 735 LSGKIEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYG 788 (858)
Q Consensus 735 l~~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 788 (858)
|..++..++...+..+++|+.++|..+ ++.....+|.++ +|+.+++++|.+.
T Consensus 307 l~~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 307 IPESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CCTTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred eCCceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 998887787777777899999999655 666667889999 9999999988654
No 152
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.93 E-value=3e-09 Score=112.84 Aligned_cols=178 Identities=19% Similarity=0.112 Sum_probs=109.6
Q ss_pred CceeeccccHHHHHHHHhcC---CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHH
Q 037627 176 GNVVGFDDDVSKLLAKLLNK---EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIR 252 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 252 (858)
+.|+|++..++.+...+... ....+.+.|+|++|+|||++|+.+++ ..... .++++.+......+
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~--~~~~~---~~~~~~~~~~~~~~------- 79 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH--ELGVN---LRVTSGPAIEKPGD------- 79 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH--HHTCC---EEEECTTTCCSHHH-------
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH--HhCCC---EEEEeccccCChHH-------
Confidence 56999999999888877531 22346789999999999999999987 33222 33444332222111
Q ss_pred hccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh--hHHHHHhhCCCC------------------CCCcE
Q 037627 253 SFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE--TWESLKRAFPDN------------------KNGSR 312 (858)
Q Consensus 253 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~--~~~~l~~~l~~~------------------~~gs~ 312 (858)
+...+... ..++.+|++|+++... ....+...+... .++.+
T Consensus 80 ------------------l~~~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 80 ------------------LAAILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp ------------------HHHHHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred ------------------HHHHHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 11111111 1356689999998653 333333322211 02355
Q ss_pred EEEEeCchh-HHhhcCCCC-ceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHHHhHh
Q 037627 313 VIITTRIKE-VAERSDENA-YAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVLGGLL 386 (858)
Q Consensus 313 ilvTtR~~~-~~~~~~~~~-~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~~l 386 (858)
+|.||.... +........ ..+.+.+++.+|..+++...+.......+ ++....|++.++|+|..+..+...+
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT--EEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC--HHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHccCCHHHHHHHHHHH
Confidence 666665442 211111111 57899999999999999888754433222 4667889999999998887765544
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.90 E-value=1.9e-08 Score=109.25 Aligned_cols=212 Identities=8% Similarity=0.019 Sum_probs=128.8
Q ss_pred cccCCcccceEeccCCcccccCcc-cccCCCCcEEeccccccccccchhhhcccccccccc---cccc--ccCCCCCccc
Q 037627 585 EMVKLVNLKYLRLTNAHIDVIPSC-IAKLQRLQTLDISGNMAFMELPREICELKELRHLIG---NFTG--TLNIENLSNL 658 (858)
Q Consensus 585 ~~~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~---~~~~--~~~~~~l~~L 658 (858)
.|.++ +|+.+.+.++ ++.|+.. |.+ .+|+.+.+..+ ....-+..|..+++|+.+.. .+.. ...|. +.+|
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~~-l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L 205 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPST-LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGI 205 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCTT-CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCC
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCCC-ccEehHHHhhCcccCCeeecCCCcceEechhhEe-eccc
Confidence 35554 6888888765 6666543 444 46888888764 44444466778888887732 2211 11343 5677
Q ss_pred cccceeecc-cccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEecc
Q 037627 659 QTLKYVERG-SWAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSG 737 (858)
Q Consensus 659 ~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 737 (858)
+.+.+..+- ......+..+++|+.+.+..+ . ..+...++.+ .+|+.+.+.. ....+ ....|..|++|+.+.+.+
T Consensus 206 ~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~-l-~~I~~~aF~~-~~L~~i~lp~-~i~~I-~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 206 EEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN-V-STIGQEAFRE-SGITTVKLPN-GVTNI-ASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp SEEECCTTCCEECTTTTTTCTTCCCEECCTT-C-CEECTTTTTT-CCCSEEEEET-TCCEE-CTTTTTTCTTCCEEEEES
T ss_pred CEEEeCCchheehhhHhhCCCCCCEEecCCC-c-cCcccccccc-CCccEEEeCC-CccEE-ChhHhhCCCCCCEEEeCC
Confidence 777765332 222334567777888877653 2 2223255555 6788888843 33333 345677788888888877
Q ss_pred cCCC------CChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECCCCccccceeeecCC
Q 037627 738 KIEK------LPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDL 810 (858)
Q Consensus 738 ~~~~------~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~ 810 (858)
+... ++...+..|++|+.++|.+ .++.....+|.++++|+.+.|..| ++... ......+ +|+.+.+.++
T Consensus 281 ~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~-~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 281 STFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQIN-FSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp SCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEEC-TTSSSSS-CCCEEEECCS
T ss_pred ccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEc-HHhCCCC-CCCEEEEcCC
Confidence 6433 6666666678888888874 466566677888888888888644 32110 0112234 6777777753
No 154
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.87 E-value=5.2e-09 Score=111.17 Aligned_cols=181 Identities=14% Similarity=0.131 Sum_probs=113.1
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccC-Cc-ceEEEEEeCCCCCHHHHHHHHHHh
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKN-KF-DRCAWVSVSQDYDTKDLLLRIIRS 253 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~-~f-~~~~wv~~~~~~~~~~~~~~i~~~ 253 (858)
..++|++..++.+..++..+. .+.+.|+|++|+||||+|+.+++. ... .+ ...+.++.+..... ..++.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~-~~~~~---- 95 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGI-NVIRE---- 95 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHH-HTTHH----
T ss_pred HHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCch-HHHHH----
Confidence 469999999999999887654 334899999999999999999973 211 11 11333332211000 00000
Q ss_pred ccccccchhhhhccHHHHHHHHHHH--h-cCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCchhH-HhhcC
Q 037627 254 FKINVLTRELEEMREEDLERYLHNC--L-QGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRIKEV-AERSD 327 (858)
Q Consensus 254 l~~~~~~~~~~~~~~~~~~~~l~~~--l-~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~~-~~~~~ 327 (858)
.+.. +... + .+++.++|+||++.. +.+..+...+.....++++|+||..... .....
T Consensus 96 ----------------~~~~-~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 158 (327)
T 1iqp_A 96 ----------------KVKE-FARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ 158 (327)
T ss_dssp ----------------HHHH-HHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred ----------------HHHH-HHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHH
Confidence 0111 1110 1 256889999999864 3455566555444557788888876531 11111
Q ss_pred CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHHHh
Q 037627 328 ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVLGG 384 (858)
Q Consensus 328 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~~ 384 (858)
.....+.+.+++.++..+++...+...... ..++....|++.++|.|..+..+..
T Consensus 159 sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 159 SRCAIFRFRPLRDEDIAKRLRYIAENEGLE--LTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp HTEEEEECCCCCHHHHHHHHHHHHHTTTCE--ECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhCcEEEecCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 112578999999999999998877544322 2245678899999999986554433
No 155
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.83 E-value=1e-10 Score=114.24 Aligned_cols=44 Identities=9% Similarity=0.154 Sum_probs=25.7
Q ss_pred ccCCcccceEeccCCccc-------ccCcccccCCCCcEEeccccccccccc
Q 037627 586 MVKLVNLKYLRLTNAHID-------VIPSCIAKLQRLQTLDISGNMAFMELP 630 (858)
Q Consensus 586 ~~~l~~L~~L~L~~n~i~-------~lp~~l~~l~~L~~L~L~~n~~~~~lp 630 (858)
+.....++.++++++.+. .+|..+.++++|++|++++|. +..+|
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~ 64 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS 64 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc
Confidence 344455555555554443 334477778888888888773 33344
No 156
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.79 E-value=3.5e-08 Score=106.90 Aligned_cols=198 Identities=13% Similarity=0.130 Sum_probs=113.6
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
..++|++..++.+...+..+. ..+.+.|+|++|+||||+|+.+++.......+. ..+.........+.....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~ 87 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIEQGRF 87 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHHTSCC
T ss_pred hhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHhccCC
Confidence 459999999999999987653 234788999999999999999987321111110 000000011111111000
Q ss_pred ccc---cch-hhhhccHHHHHHHHHHH-hcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCchh-HHhhcC
Q 037627 256 INV---LTR-ELEEMREEDLERYLHNC-LQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRIKE-VAERSD 327 (858)
Q Consensus 256 ~~~---~~~-~~~~~~~~~~~~~l~~~-l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~-~~~~~~ 327 (858)
... ... .........+.+.+... ..+++.+||+||++.. .....+...+.....+..+|++|.... +.....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~ 167 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHH
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHH
Confidence 000 000 00001122222221111 1356789999999754 455666666655555677777776442 211111
Q ss_pred CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHHH
Q 037627 328 ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVLG 383 (858)
Q Consensus 328 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 383 (858)
.....+.+.+++.++..+++.+.+...+... .++....|++.++|.|..+..+.
T Consensus 168 sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~--~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 168 SRCLQFHLKALDVEQIRHQLEHILNEEHIAH--EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred hheeEeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHCCCCHHHHHHHH
Confidence 2236899999999999999987664322211 14567889999999998776654
No 157
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.79 E-value=3.9e-08 Score=101.41 Aligned_cols=174 Identities=10% Similarity=0.080 Sum_probs=106.6
Q ss_pred CceeeccccHHHHHHHHhcC--CCCcEEEEEEecCcchHHHHHHHHhcCccccC------CcceEEEEEeCCCCCHHHHH
Q 037627 176 GNVVGFDDDVSKLLAKLLNK--EPRRFVISVYGMGGLGKTTLARKLYHNNDVKN------KFDRCAWVSVSQDYDTKDLL 247 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~------~f~~~~wv~~~~~~~~~~~~ 247 (858)
..+.||++|++++...|... .+....+.|+|++|+|||++|+.+++...... .| ..+++++....+...++
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHHH
Confidence 44889999999999888653 44577899999999999999999998432111 12 35677777777888999
Q ss_pred HHHHHhccccccchhhhhccHHHHHHHHHHH--hcCceEEEEEEcCCChhhHHHHHhhCC---CCCCCcEEEEEeCchh-
Q 037627 248 LRIIRSFKINVLTRELEEMREEDLERYLHNC--LQGKSYLVVVDDAWQKETWESLKRAFP---DNKNGSRVIITTRIKE- 321 (858)
Q Consensus 248 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~--l~~~~~LlvlDd~~~~~~~~~l~~~l~---~~~~gs~ilvTtR~~~- 321 (858)
..|++++...... .....+.+...+... -.+++++++||+++....-+.+...+. .......||.++...+
T Consensus 99 ~~I~~~L~g~~~~---~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 99 EKIWFAISKENLC---GDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHHSCCC-----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHHHHhcCCCCC---chHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 9999998654221 111233333333332 246789999999986532222222221 1111223344443321
Q ss_pred ----HHhhc--CCCCceeecCCCChhHHHHHHHHHhcC
Q 037627 322 ----VAERS--DENAYAHKLRFLRSDESWELFCEKAFR 353 (858)
Q Consensus 322 ----~~~~~--~~~~~~~~l~~L~~~e~~~l~~~~~~~ 353 (858)
+.... ......+.+.+++.+|..+++.+++..
T Consensus 176 ~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 176 IREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp CHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred chhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 11100 111146899999999999999887643
No 158
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.69 E-value=2.8e-08 Score=94.27 Aligned_cols=59 Identities=22% Similarity=0.395 Sum_probs=43.3
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCccccc-CcccccCCCCcEEeccccccccccch
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVI-PSCIAKLQRLQTLDISGNMAFMELPR 631 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~n~~~~~lp~ 631 (858)
+.++++++. ++ .+|..+. ++|++|+|++|.++.+ |..|.++++|++|+|++| .+..+|.
T Consensus 15 ~~l~~~~n~-------l~--~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~ 74 (174)
T 2r9u_A 15 TLVNCQNIR-------LA--SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPT 74 (174)
T ss_dssp SEEECCSSC-------CS--SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred cEEEeCCCC-------CC--ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccCh
Confidence 567777777 66 7777664 6888888888888877 556778888888888888 3444443
No 159
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.69 E-value=6.2e-08 Score=102.38 Aligned_cols=180 Identities=14% Similarity=0.115 Sum_probs=113.1
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCc-ceEEEEEeCCCCCHHHHHHHHHHhc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKF-DRCAWVSVSQDYDTKDLLLRIIRSF 254 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l 254 (858)
+.++|++..++.+..++..+. .+.+.|+|++|+|||++|+.+++.. ....+ ...+.++.+.......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~--------- 84 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDL-FGENWRDNFIEMNASDERGIDV--------- 84 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHH-HTTCHHHHCEEEETTSTTCTTT---------
T ss_pred HHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHh-cCCcccCCeEEEeCccccChHH---------
Confidence 458999999999988886643 3348999999999999999998731 11122 1233344332111000
Q ss_pred cccccchhhhhccHHHHHHHHHHH--h-cCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCchh-HHhhcCC
Q 037627 255 KINVLTRELEEMREEDLERYLHNC--L-QGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRIKE-VAERSDE 328 (858)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~--l-~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~-~~~~~~~ 328 (858)
.......+... + .+++.++|+|+++.. +....+...+.....+.++|+||.... +......
T Consensus 85 -------------~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 85 -------------VRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp -------------SSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred -------------HHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 00111111111 1 256889999999865 345566666666566778888876553 2111112
Q ss_pred CCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 037627 329 NAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVL 382 (858)
Q Consensus 329 ~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 382 (858)
....+.+.+++.++..+++...+....... .++....|++.++|.+..+...
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i--~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVKI--TEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCCCB--CHHHHHHHHHTTTTCHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 225899999999999999988775543321 2456788999999999865443
No 160
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.68 E-value=3.7e-08 Score=93.11 Aligned_cols=86 Identities=23% Similarity=0.254 Sum_probs=59.7
Q ss_pred CCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeE
Q 037627 703 KNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILD 781 (858)
Q Consensus 703 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 781 (858)
++|+.|++++|.+..+ ....+..+++|+.|+|++| +..+|...+..+++|+.|+|++|.+++.++..|..+++|+.|+
T Consensus 30 ~~l~~L~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKL-EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCcc-ChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 5667777777666554 2344666777777777775 5666666544467888888888887776666777888888888
Q ss_pred eeccccCC
Q 037627 782 LGLKSYGG 789 (858)
Q Consensus 782 L~~n~~~~ 789 (858)
|++|.+..
T Consensus 109 L~~N~~~c 116 (170)
T 3g39_A 109 LLNNPWDC 116 (170)
T ss_dssp CCSSCBCT
T ss_pred eCCCCCCC
Confidence 88877654
No 161
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.68 E-value=4.3e-07 Score=96.69 Aligned_cols=175 Identities=19% Similarity=0.168 Sum_probs=106.1
Q ss_pred CCceeeccccHHHHHHHHhcC---CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHH
Q 037627 175 EGNVVGFDDDVSKLLAKLLNK---EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRII 251 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 251 (858)
-+.++|++..++++..++... ....+.+.|+|++|+|||++|+.+++ .....| +.++.......
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~--~~~~~~---~~~~~~~~~~~-------- 94 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY--EMSANI---KTTAAPMIEKS-------- 94 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH--HTTCCE---EEEEGGGCCSH--------
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH--HhCCCe---EEecchhccch--------
Confidence 357999999999998888643 33456789999999999999999987 333332 23333221111
Q ss_pred HhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh--hhHHHHHhhCCCC------------------CCCc
Q 037627 252 RSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK--ETWESLKRAFPDN------------------KNGS 311 (858)
Q Consensus 252 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~------------------~~gs 311 (858)
......+.. ..+..+|+||+++.. .....+...+... .++.
T Consensus 95 -----------------~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 95 -----------------GDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp -----------------HHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred -----------------hHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 111111111 245678999999855 2233333332211 1124
Q ss_pred EEEEEeCchhH-Hhh-cCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHHH
Q 037627 312 RVIITTRIKEV-AER-SDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVLG 383 (858)
Q Consensus 312 ~ilvTtR~~~~-~~~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 383 (858)
.+|.||..... ... .......+.+.+++.++..+++.+.+...... ..++....|++.+.|+|-.+..+.
T Consensus 156 ~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT--CEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE--ECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHCcCHHHHHHHH
Confidence 56666654321 111 11112579999999999999998877543321 224667888999999996555443
No 162
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.66 E-value=5.3e-08 Score=92.40 Aligned_cols=86 Identities=21% Similarity=0.254 Sum_probs=61.1
Q ss_pred CCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeE
Q 037627 703 KNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILD 781 (858)
Q Consensus 703 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 781 (858)
++|+.|++++|.+..+ ....+..+++|+.|+|++| +..+|...+..+++|+.|+|++|.++..++..|..+++|+.|+
T Consensus 33 ~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 5677777777766544 2345666777777777775 6667766544468888888888888766666678888888888
Q ss_pred eeccccCC
Q 037627 782 LGLKSYGG 789 (858)
Q Consensus 782 L~~n~~~~ 789 (858)
|++|.+..
T Consensus 112 L~~N~~~c 119 (174)
T 2r9u_A 112 LYNNPWDC 119 (174)
T ss_dssp CCSSCBCT
T ss_pred eCCCCccc
Confidence 88887753
No 163
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.65 E-value=3.9e-08 Score=92.94 Aligned_cols=70 Identities=23% Similarity=0.377 Sum_probs=50.6
Q ss_pred eeeeccCCccccccccCCCCCccccccCCcccceEeccCCccccc-CcccccCCCCcEEeccccccccccch-hhhcccc
Q 037627 561 RVLNFEGVVSNVLCSVGGCYNLPEEMVKLVNLKYLRLTNAHIDVI-PSCIAKLQRLQTLDISGNMAFMELPR-EICELKE 638 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~n~~~~~lp~-~~~~l~~ 638 (858)
+.++++++. +. .+|..+. ++|++|+|++|.|+.+ |..|.++++|++|+|++|.+. .+|. .|..+++
T Consensus 12 ~~l~~s~n~-------l~--~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~ 79 (170)
T 3g39_A 12 TTVDCSGKS-------LA--SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQ 79 (170)
T ss_dssp TEEECTTSC-------CS--SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTT
T ss_pred CEEEeCCCC-------cC--ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCC
Confidence 678888888 77 7887664 7889999999999887 556888899999999988444 4443 3344444
Q ss_pred cccc
Q 037627 639 LRHL 642 (858)
Q Consensus 639 L~~L 642 (858)
|++|
T Consensus 80 L~~L 83 (170)
T 3g39_A 80 LTQL 83 (170)
T ss_dssp CCEE
T ss_pred CCEE
Confidence 4444
No 164
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.59 E-value=4.8e-08 Score=94.64 Aligned_cols=46 Identities=22% Similarity=0.375 Sum_probs=39.3
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcC
Q 037627 175 EGNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
-..++||+++++++.+.+.... .+.+.|+|++|+|||++|+.+++.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999987643 457899999999999999999873
No 165
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.55 E-value=1.8e-06 Score=88.53 Aligned_cols=197 Identities=16% Similarity=0.169 Sum_probs=107.2
Q ss_pred CceeeccccHHHHHHH-------HhcC-CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHH
Q 037627 176 GNVVGFDDDVSKLLAK-------LLNK-EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLL 247 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~-------L~~~-~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 247 (858)
+.++|+...++++... +... ....+.+.|+|++|+|||++|+.+++ .....| +.++.+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~--~~~~~~---~~i~~~~~------- 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAE--ESNFPF---IKICSPDK------- 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHH--HHTCSE---EEEECGGG-------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEeCHHH-------
Confidence 4578888777766653 3222 34567899999999999999999997 332222 22332211
Q ss_pred HHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh-----------h-hHHHHHhhCCC---CCCCcE
Q 037627 248 LRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK-----------E-TWESLKRAFPD---NKNGSR 312 (858)
Q Consensus 248 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-----------~-~~~~l~~~l~~---~~~gs~ 312 (858)
+.... .......+...+......++.+|+|||++.. . ..+.+...+.. ......
T Consensus 101 ------~~g~~-----~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ 169 (272)
T 1d2n_A 101 ------MIGFS-----ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLL 169 (272)
T ss_dssp ------CTTCC-----HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEE
T ss_pred ------hcCCc-----hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEE
Confidence 00000 0001122233333344467889999998642 1 22334444432 233445
Q ss_pred EEEEeCchhHHhh---cCCCCceeecCCCCh-hHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCC------hHHHHHH
Q 037627 313 VIITTRIKEVAER---SDENAYAHKLRFLRS-DESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGL------PLAIVVL 382 (858)
Q Consensus 313 ilvTtR~~~~~~~---~~~~~~~~~l~~L~~-~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~------Plai~~~ 382 (858)
||.||........ .......+.+++++. ++...++.+.. . . . ++....|++.+.|. .-++..+
T Consensus 170 ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~-~-~--~---~~~~~~l~~~~~g~~~~g~ir~l~~~l 242 (272)
T 1d2n_A 170 IIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG-N-F--K---DKERTTIAQQVKGKKVWIGIKKLLMLI 242 (272)
T ss_dssp EEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT-C-S--C---HHHHHHHHHHHTTSEEEECHHHHHHHH
T ss_pred EEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC-C-C--C---HHHHHHHHHHhcCCCccccHHHHHHHH
Confidence 6777776644332 112125688999988 66666665532 1 1 1 45577888888883 3434433
Q ss_pred HhHhcCCChHHHHHHHHHHH
Q 037627 383 GGLLSMKKPQEWRRVRDHLW 402 (858)
Q Consensus 383 ~~~l~~~~~~~w~~~~~~l~ 402 (858)
-.+........+..+++.+.
T Consensus 243 ~~a~~~~~~~~~~~~~~~l~ 262 (272)
T 1d2n_A 243 EMSLQMDPEYRVRKFLALLR 262 (272)
T ss_dssp HHHTTSCGGGHHHHHHHHHH
T ss_pred HHHhhhchHHHHHHHHHHHH
Confidence 33322224455555555443
No 166
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.53 E-value=1.3e-06 Score=94.14 Aligned_cols=203 Identities=12% Similarity=0.059 Sum_probs=110.1
Q ss_pred CCceeeccccHHH---HHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEe----CCCCCHHHHH
Q 037627 175 EGNVVGFDDDVSK---LLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSV----SQDYDTKDLL 247 (858)
Q Consensus 175 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~----~~~~~~~~~~ 247 (858)
.+.|||++..++. +.+.+..+....+.+.|+|++|+|||++|+.+++. ..... ..+.+.. +........+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~--l~~~~-~~~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDT-PFTAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH--HCSSC-CEEEEEGGGGSCSSSCHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH--hcccC-CcccccchhhhhcccchhHHH
Confidence 4579999988776 45555555434578999999999999999999983 33221 1122222 1223344444
Q ss_pred HHHHHhccccc--------------------------cchhhhhccHHHHHHHHHHHh-----cCc----eEEEEEEcCC
Q 037627 248 LRIIRSFKINV--------------------------LTRELEEMREEDLERYLHNCL-----QGK----SYLVVVDDAW 292 (858)
Q Consensus 248 ~~i~~~l~~~~--------------------------~~~~~~~~~~~~~~~~l~~~l-----~~~----~~LlvlDd~~ 292 (858)
.+.+....... ............+...+.... .++ +.+|++|+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 44433311100 000000000112222222111 233 4599999998
Q ss_pred Ch--hhHHHHHhhCCCCCCCcEEEEEeCc-------------hhHHhhcCCCCceeecCCCChhHHHHHHHHHhcCCCCC
Q 037627 293 QK--ETWESLKRAFPDNKNGSRVIITTRI-------------KEVAERSDENAYAHKLRFLRSDESWELFCEKAFRKSNG 357 (858)
Q Consensus 293 ~~--~~~~~l~~~l~~~~~gs~ilvTtR~-------------~~~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~ 357 (858)
.. +....+...+...... .++++|.. ..+..........+.+.+++.++..+++...+......
T Consensus 200 ~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~ 278 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVE 278 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTCC
T ss_pred ccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 65 3455666666544433 34444431 11111111112458999999999999999877543322
Q ss_pred ChhHHHHHHHHHHHcC-CChHHHHHHH
Q 037627 358 SEGLEKLGREMVEKCR-GLPLAIVVLG 383 (858)
Q Consensus 358 ~~~~~~~~~~I~~~~~-G~Plai~~~~ 383 (858)
..++....|++.+. |.|..+..+.
T Consensus 279 --~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 279 --MSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp --BCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred --CCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 22456788888887 8886555443
No 167
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.51 E-value=1.6e-07 Score=94.74 Aligned_cols=172 Identities=13% Similarity=0.095 Sum_probs=99.3
Q ss_pred Cceeecc---ccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHH
Q 037627 176 GNVVGFD---DDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIR 252 (858)
Q Consensus 176 ~~~vGr~---~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 252 (858)
+.|+|++ ..++.+..+.... ..+.+.|+|++|+||||||+.+++ ........+.|++.+.....
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~~--------- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIPLGIHASI--------- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEGGGGGGS---------
T ss_pred hhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEHHHHHHH---------
Confidence 4577643 4445555554433 356899999999999999999987 33322334667765432110
Q ss_pred hccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh--h--HHHHHhhCCCC--CCCcEEEEEeCchh-----
Q 037627 253 SFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE--T--WESLKRAFPDN--KNGSRVIITTRIKE----- 321 (858)
Q Consensus 253 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~--~--~~~l~~~l~~~--~~gs~ilvTtR~~~----- 321 (858)
+. .. + +.+ .++.+||+||++... . .+.+...+... ....++|+||+...
T Consensus 95 -~~--------~~---------~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 95 -ST--------AL---------L-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp -CG--------GG---------G-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred -HH--------HH---------H-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 00 00 0 001 346799999997542 1 23333322211 11224777776432
Q ss_pred ----HHhhcCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHHH
Q 037627 322 ----VAERSDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVLG 383 (858)
Q Consensus 322 ----~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~~ 383 (858)
+....... ..+.+.+++.++..+++...+....... .++....|++.++|.+..+..+.
T Consensus 155 ~~~~l~~r~~~~-~~i~l~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 155 VLPDLVSRMHWG-LTYQLQPMMDDEKLAALQRRAAMRGLQL--PEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp CCHHHHHHHHHS-EEEECCCCCGGGHHHHHHHHHHHTTCCC--CHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhhhhHhhcC-ceEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHccCCHHHHHHHH
Confidence 11111111 5789999999999999998775333221 24667889999999987665543
No 168
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.50 E-value=6.4e-07 Score=92.77 Aligned_cols=182 Identities=12% Similarity=0.099 Sum_probs=104.8
Q ss_pred cCCceeeccccHHHHHHHHhcC-----------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCC
Q 037627 174 IEGNVVGFDDDVSKLLAKLLNK-----------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYD 242 (858)
Q Consensus 174 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 242 (858)
.-+.++|.+..++++.+.+... -...+.+.|+|++|+|||+||+.+++ ..... .+.++.+....
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~--~~~~~---~~~v~~~~~~~ 89 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT--ETNAT---FIRVVGSELVK 89 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHH--HTTCE---EEEEEGGGGCC
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCC---EEEEehHHHHH
Confidence 3457999999999998877432 12356799999999999999999997 33322 22333221110
Q ss_pred HHHHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh----------------hhHHHHHhhCC-
Q 037627 243 TKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK----------------ETWESLKRAFP- 305 (858)
Q Consensus 243 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~----------------~~~~~l~~~l~- 305 (858)
... ......+...+.......+.+|+|||++.. ..+..+...+.
T Consensus 90 --------------~~~-----~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 150 (285)
T 3h4m_A 90 --------------KFI-----GEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDG 150 (285)
T ss_dssp --------------CST-----THHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHT
T ss_pred --------------hcc-----chHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhC
Confidence 000 001122223333333456789999999643 11222222221
Q ss_pred -CCCCCcEEEEEeCchhHHh-hc-C--CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCC-ChHHH
Q 037627 306 -DNKNGSRVIITTRIKEVAE-RS-D--ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRG-LPLAI 379 (858)
Q Consensus 306 -~~~~gs~ilvTtR~~~~~~-~~-~--~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G-~Plai 379 (858)
....+..||.||....... .. . .....+.+.+.+.++..+++...+.......+ .....|++.+.| .|-.+
T Consensus 151 ~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~i 227 (285)
T 3h4m_A 151 FDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED---VNLEEIAKMTEGCVGAEL 227 (285)
T ss_dssp TCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTCCHHHH
T ss_pred CCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCCCHHHH
Confidence 2234567777887553221 00 1 11147899999999999999888754432211 124667777777 45444
Q ss_pred HHH
Q 037627 380 VVL 382 (858)
Q Consensus 380 ~~~ 382 (858)
..+
T Consensus 228 ~~l 230 (285)
T 3h4m_A 228 KAI 230 (285)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 169
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.50 E-value=3.9e-07 Score=97.73 Aligned_cols=195 Identities=13% Similarity=0.136 Sum_probs=111.2
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCc-ceEEEEEeCCCCCHHHHHHHHHHh
Q 037627 175 EGNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKF-DRCAWVSVSQDYDTKDLLLRIIRS 253 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~ 253 (858)
-..++|++..++.+..++..+.. +.+.|+|++|+||||+|+.++........+ ..++.++.+..... ..+.+....
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 112 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGI-SIVREKVKN 112 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCH-HHHTTHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccch-HHHHHHHHH
Confidence 35689999999999999876532 238999999999999999998731111111 12333333332222 222222211
Q ss_pred ccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCchh-HHhhcCCCC
Q 037627 254 FKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRIKE-VAERSDENA 330 (858)
Q Consensus 254 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~-~~~~~~~~~ 330 (858)
............ .....-.+++-+|++|+++.. .....+...+.......++|++|.... +........
T Consensus 113 ~~~~~~~~~~~~--------~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 113 FARLTVSKPSKH--------DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHHSCCCCCCTT--------HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred Hhhhcccccchh--------hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 111000000000 000111235579999999754 334445544443344567777775442 111111112
Q ss_pred ceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 037627 331 YAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVL 382 (858)
Q Consensus 331 ~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 382 (858)
..+.+.+++.++..+.+...+.......+ ++....|++.++|.|..+..+
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~--~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENVKCD--DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCCC--HHHHHHHHHHTSSCHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCCHHHHHHH
Confidence 57899999999999999887754332222 467788999999999865443
No 170
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.43 E-value=5e-06 Score=84.78 Aligned_cols=182 Identities=12% Similarity=0.087 Sum_probs=101.1
Q ss_pred CceeeccccHHHHHHHHh---cCC-------CCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHH
Q 037627 176 GNVVGFDDDVSKLLAKLL---NKE-------PRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKD 245 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~---~~~-------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 245 (858)
.+++|.+..++.+.+.+. ... ...+.+.|+|++|+|||++|+.+++ ..... .+.++.+...+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~--~~~~~---~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT--EAQVP---FLAMAGAEFVEV-- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH--HHTCC---EEEEETTTTSSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCC---EEEechHHHHhh--
Confidence 468898888777765542 211 2345688999999999999999997 33322 334444322110
Q ss_pred HHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh-----------------hhHHHHHhhCCC--
Q 037627 246 LLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK-----------------ETWESLKRAFPD-- 306 (858)
Q Consensus 246 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-----------------~~~~~l~~~l~~-- 306 (858)
.. ......+...+.......+.+|++|+++.. ..+..+...+..
T Consensus 79 --------~~---------~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 141 (262)
T 2qz4_A 79 --------IG---------GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG 141 (262)
T ss_dssp --------ST---------THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC
T ss_pred --------cc---------ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC
Confidence 00 001122223333333456789999999854 112233332222
Q ss_pred CCCCcEEEEEeCchhHH-hhc-C--CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChH-HHHH
Q 037627 307 NKNGSRVIITTRIKEVA-ERS-D--ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPL-AIVV 381 (858)
Q Consensus 307 ~~~gs~ilvTtR~~~~~-~~~-~--~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~ 381 (858)
...+..||.||...... ... . .....+.+...+.++-.+++...+........ .......+++.+.|.+- .+..
T Consensus 142 ~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 142 TTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQS-STFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp TTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBT-HHHHHHHHHHTCTTCCHHHHHH
T ss_pred CCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcc-hhhHHHHHHHHCCCCCHHHHHH
Confidence 22355666677554321 111 1 11256789999999999999887654433211 12234778888888754 4444
Q ss_pred H
Q 037627 382 L 382 (858)
Q Consensus 382 ~ 382 (858)
+
T Consensus 221 l 221 (262)
T 2qz4_A 221 I 221 (262)
T ss_dssp H
T ss_pred H
Confidence 4
No 171
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.43 E-value=8.3e-07 Score=97.35 Aligned_cols=182 Identities=16% Similarity=0.153 Sum_probs=103.8
Q ss_pred Ccee-eccccH--HHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCc--ceEEEEEeCCCCCHHHHHHHH
Q 037627 176 GNVV-GFDDDV--SKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKF--DRCAWVSVSQDYDTKDLLLRI 250 (858)
Q Consensus 176 ~~~v-Gr~~~~--~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i 250 (858)
+.|| |..... ..+......+. ....+.|+|++|+||||||+.+++ .....+ ..+++++.. .+..++
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~-~~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~------~~~~~~ 175 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPG-RYNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE------KFLNDL 175 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTT-SSCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHH------HHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCC-CCCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH------HHHHHH
Confidence 4565 654433 23333333332 267899999999999999999997 333222 234555543 233333
Q ss_pred HHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh----hHHHHHhhCCC-CCCCcEEEEEeCchh----
Q 037627 251 IRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE----TWESLKRAFPD-NKNGSRVIITTRIKE---- 321 (858)
Q Consensus 251 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~----~~~~l~~~l~~-~~~gs~ilvTtR~~~---- 321 (858)
...+... .. ..+...+..++-+|++||++... ..+.+...+.. ...|..||+||....
T Consensus 176 ~~~~~~~---------~~----~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~ 242 (440)
T 2z4s_A 176 VDSMKEG---------KL----NEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLS 242 (440)
T ss_dssp HHHHHTT---------CH----HHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCS
T ss_pred HHHHHcc---------cH----HHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHH
Confidence 3332211 11 12233333367799999997442 22334333321 123567888887632
Q ss_pred -----HHhhcCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 037627 322 -----VAERSDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVL 382 (858)
Q Consensus 322 -----~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 382 (858)
+...+..+ ..+.+.+++.++..+++.+.+.......+ ++....|++.++|.+-.+..+
T Consensus 243 ~l~~~L~sR~~~g-~~i~l~~p~~e~r~~iL~~~~~~~~~~i~--~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 243 EFQDRLVSRFQMG-LVAKLEPPDEETRKSIARKMLEIEHGELP--EEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp SCCHHHHHHHHSS-BCCBCCCCCHHHHHHHHHHHHHHHTCCCC--TTHHHHHHHHCCSCHHHHHHH
T ss_pred HHHHHHHhhccCC-eEEEeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhcCCCHHHHHHH
Confidence 22222222 46889999999999999887753222111 345677889999988655443
No 172
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.43 E-value=1e-07 Score=101.35 Aligned_cols=111 Identities=20% Similarity=0.305 Sum_probs=53.6
Q ss_pred ccCCCeeEEeecccccccchhhhh--cCCCCCeEEeeccCCc---c--ccCCC-CC--CCCCCccEEEeccc-CCC-CCh
Q 037627 677 LVNLRDLRIISKYQEEEFSFKSIA--YLKNLQLLSIRLSDDT---C--FDSLQ-PL--SDCSYLIDLRLSGK-IEK-LPE 744 (858)
Q Consensus 677 l~~L~~L~l~~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~---~--~~~~~-~l--~~l~~L~~L~l~~~-~~~-~p~ 744 (858)
+++|++|.+..+....... ..+. .+++|+.|+|+.+... . ...+. .+ ..+++|+.|+|+++ +.. .+.
T Consensus 192 ~~~L~~L~L~~~~l~~~~l-~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~ 270 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVV-EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE 270 (362)
T ss_dssp CTTCSEEEEECSBCCHHHH-HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH
T ss_pred CCCCcEEEEecCCCChHHH-HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH
Confidence 5667777766555332222 3333 5677777777532110 0 00000 11 23566666666553 210 111
Q ss_pred hhhh--ccCCccEEEEecccCCCCC----ccccCCCCCCCeeEeeccccC
Q 037627 745 DLHE--VLPNLECLSLKKSHLKEDP----MPKLEKLPNLTILDLGLKSYG 788 (858)
Q Consensus 745 ~~~~--~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~~~ 788 (858)
.+.. .+++|+.|+|+.|.+.+.. +..+.++++|+.|+|++|.++
T Consensus 271 ~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 271 MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 1221 1466777777666665421 222344566777777666654
No 173
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.41 E-value=7.7e-07 Score=100.07 Aligned_cols=189 Identities=17% Similarity=0.147 Sum_probs=108.1
Q ss_pred CCceeeccccHHHHHHHHhcC---------------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCC
Q 037627 175 EGNVVGFDDDVSKLLAKLLNK---------------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQ 239 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~~---------------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 239 (858)
-.+++|++..++++..++... .+..+.+.|+|++|+||||+|+.+++. .. + .++.++.+.
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l~--~-~~i~in~s~ 112 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--LG--Y-DILEQNASD 112 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--TT--C-EEEEECTTS
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--cC--C-CEEEEeCCC
Confidence 357999999999999998651 013468999999999999999999973 32 2 244455544
Q ss_pred CCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHH--HhcCceEEEEEEcCCCh-----hhHHHHHhhCCCCCCCcE
Q 037627 240 DYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHN--CLQGKSYLVVVDDAWQK-----ETWESLKRAFPDNKNGSR 312 (858)
Q Consensus 240 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~--~l~~~~~LlvlDd~~~~-----~~~~~l~~~l~~~~~gs~ 312 (858)
.... ..+...+........ .. ........ ...+++.+|++|+++.. ..+..+...+... +..
T Consensus 113 ~~~~-~~~~~~i~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~ 181 (516)
T 1sxj_A 113 VRSK-TLLNAGVKNALDNMS---VV-----GYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STP 181 (516)
T ss_dssp CCCH-HHHHHTGGGGTTBCC---ST-----TTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSC
T ss_pred cchH-HHHHHHHHHHhcccc---HH-----HHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCC
Confidence 4333 222222221111100 00 00000000 12356889999999753 1234444433322 223
Q ss_pred EEEEeCchh---HHhhcCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChH-HHHHH
Q 037627 313 VIITTRIKE---VAERSDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPL-AIVVL 382 (858)
Q Consensus 313 ilvTtR~~~---~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~ 382 (858)
||+++.... +.. .......+.+.+++.++..+++...+.......+ ++....|++.++|.+. ++..+
T Consensus 182 iIli~~~~~~~~l~~-l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~--~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 182 LILICNERNLPKMRP-FDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD--PNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp EEEEESCTTSSTTGG-GTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC--TTHHHHHHHHTTTCHHHHHHHH
T ss_pred EEEEEcCCCCccchh-hHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHHHHHH
Confidence 555544322 222 2222367899999999999999877654332211 3457789999999554 45544
No 174
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.41 E-value=7.7e-09 Score=111.14 Aligned_cols=37 Identities=14% Similarity=0.306 Sum_probs=24.4
Q ss_pred CcccceEeccCCccccc-----Ccccc-cCCCCcEEecccccc
Q 037627 589 LVNLKYLRLTNAHIDVI-----PSCIA-KLQRLQTLDISGNMA 625 (858)
Q Consensus 589 l~~L~~L~L~~n~i~~l-----p~~l~-~l~~L~~L~L~~n~~ 625 (858)
+++|++|+|++|.++.. ...+. +.++|++|+|++|.+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l 113 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL 113 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCC
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCC
Confidence 35788888888887632 22222 236888888888843
No 175
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.41 E-value=6.4e-07 Score=96.06 Aligned_cols=194 Identities=11% Similarity=0.089 Sum_probs=103.9
Q ss_pred CceeeccccHHHHHHHH-hcCCCCcEEEEEEecCcchHHHHHHHHhcCc---cccC-Ccce-------------------
Q 037627 176 GNVVGFDDDVSKLLAKL-LNKEPRRFVISVYGMGGLGKTTLARKLYHNN---DVKN-KFDR------------------- 231 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L-~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~---~~~~-~f~~------------------- 231 (858)
..++|.+...+.+..++ ..+. ... +.|+|+.|+||||+|+.++... .... .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 91 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence 46899999988888877 4332 233 8999999999999999887621 0000 0010
Q ss_pred -EEEEEeCCC-CCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh--hHHHHHhhCCCC
Q 037627 232 -CAWVSVSQD-YDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE--TWESLKRAFPDN 307 (858)
Q Consensus 232 -~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~--~~~~l~~~l~~~ 307 (858)
.+.+..+.. .......++++..+..... ..... .+. .+.+++-++|+|+++... ....+...+...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 92 YHLEITPSDMGNNDRIVIQELLKEVAQMEQ--------VDFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp SEEEECCC----CCHHHHHHHHHHHTTTTC----------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ceEEecHhhcCCcchHHHHHHHHHHHHhcc--------ccccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 011110000 0000011122211111000 00000 000 013466799999998642 344455444333
Q ss_pred CCCcEEEEEeCchh-HHhhcCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhH-HHHHHHHHHHcCCChHHHHHHH
Q 037627 308 KNGSRVIITTRIKE-VAERSDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGL-EKLGREMVEKCRGLPLAIVVLG 383 (858)
Q Consensus 308 ~~gs~ilvTtR~~~-~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~-~~~~~~I~~~~~G~Plai~~~~ 383 (858)
..+..+|++|.+.. +..........+.+.+++.++..+.+...+...... -. ++.+..|++.++|.+..+..+.
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ--LETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE--ECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 44677877776542 222222222689999999999999998876433221 11 3567889999999997655443
No 176
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.41 E-value=1e-06 Score=93.02 Aligned_cols=177 Identities=16% Similarity=0.137 Sum_probs=103.1
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
++++|.+..++.+..++..+. ...++.++|++|+|||++|+.+++ ... ..++.++.+.. . ...++..+....
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~--~l~---~~~~~i~~~~~-~-~~~i~~~~~~~~ 97 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCH--DVN---ADMMFVNGSDC-K-IDFVRGPLTNFA 97 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHH--HTT---EEEEEEETTTC-C-HHHHHTHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHH--HhC---CCEEEEccccc-C-HHHHHHHHHHHH
Confidence 579999999999999887553 345788889999999999999997 332 22444554331 1 222222111110
Q ss_pred ccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh---hHHHHHhhCCCCCCCcEEEEEeCchhH-HhhcCCCCc
Q 037627 256 INVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE---TWESLKRAFPDNKNGSRVIITTRIKEV-AERSDENAY 331 (858)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~---~~~~l~~~l~~~~~gs~ilvTtR~~~~-~~~~~~~~~ 331 (858)
... ...+++.+|++||++... ..+.+...+.....+.++|+||....- .........
T Consensus 98 ~~~-------------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~ 158 (324)
T 3u61_B 98 SAA-------------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCR 158 (324)
T ss_dssp HBC-------------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSE
T ss_pred hhc-------------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCc
Confidence 000 012467899999998754 344454444333345678888866531 111111115
Q ss_pred eeecCCCChhHHHHH-------HHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHH
Q 037627 332 AHKLRFLRSDESWEL-------FCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIV 380 (858)
Q Consensus 332 ~~~l~~L~~~e~~~l-------~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~ 380 (858)
.+.+.+++.++-.++ +...+.......+. .+....|++.++|.+..+.
T Consensus 159 ~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 159 VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD-MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC-HHHHHHHHHHTCSCTTHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHhCCCCHHHHH
Confidence 789999998884333 22222222211110 2667788899988876433
No 177
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.37 E-value=5.4e-06 Score=88.44 Aligned_cols=184 Identities=9% Similarity=0.032 Sum_probs=105.9
Q ss_pred CCceeeccccHHHHHHHHhc----------CCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHH
Q 037627 175 EGNVVGFDDDVSKLLAKLLN----------KEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTK 244 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 244 (858)
-..++|.+..++.+.+.+.. .....+.+.|+|++|+|||+||+.++. ..... .+.++.+.....
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~~---~~~i~~~~l~~~- 156 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS--QSGAT---FFSISASSLTSK- 156 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH--HTTCE---EEEEEGGGGCCS-
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH--HcCCe---EEEEehHHhhcc-
Confidence 35689999999999887743 112356899999999999999999997 33222 334444321110
Q ss_pred HHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh-------------hhHHHHHhhCCC----C
Q 037627 245 DLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK-------------ETWESLKRAFPD----N 307 (858)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-------------~~~~~l~~~l~~----~ 307 (858)
... .....+...+...-..++.+|+||+++.. .....+...+.. .
T Consensus 157 -------------~~g-----~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 218 (357)
T 3d8b_A 157 -------------WVG-----EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSS 218 (357)
T ss_dssp -------------STT-----HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----C
T ss_pred -------------ccc-----hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccC
Confidence 000 00111122222222356789999999532 112333333321 2
Q ss_pred CCCcEEEEEeCchh-HHhhc-CCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCC-ChHHHHHHHh
Q 037627 308 KNGSRVIITTRIKE-VAERS-DENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRG-LPLAIVVLGG 384 (858)
Q Consensus 308 ~~gs~ilvTtR~~~-~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G-~Plai~~~~~ 384 (858)
..+..||.||.... +.... ......+.+...+.++..+++...+........ ++....|++.+.| .+-.+..++.
T Consensus 219 ~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~--~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 219 EDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS--EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC--HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc--HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 23455666665432 11111 111146788899999999999887654332211 3567889999988 4556665544
No 178
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.36 E-value=7.9e-06 Score=85.90 Aligned_cols=184 Identities=15% Similarity=0.112 Sum_probs=106.8
Q ss_pred CCceeeccccHHHHHHHHh----------cCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHH
Q 037627 175 EGNVVGFDDDVSKLLAKLL----------NKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTK 244 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~----------~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 244 (858)
-..++|.+..++++.+.+. ......+.+.|+|++|+|||+||+.+++ ..... .+.++.+
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~~---~~~v~~~------ 85 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANST---FFSVSSS------ 85 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH--HHTCE---EEEEEHH------
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HHCCC---EEEEchH------
Confidence 3568999999999988773 1122346799999999999999999997 33322 2223221
Q ss_pred HHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh-------------hHHHHHhhCC---CCC
Q 037627 245 DLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE-------------TWESLKRAFP---DNK 308 (858)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-------------~~~~l~~~l~---~~~ 308 (858)
. +...... .....+...+...-..++.+|+||+++... ....+...+. ...
T Consensus 86 ~----l~~~~~g---------~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 152 (322)
T 3eie_A 86 D----LVSKWMG---------ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 152 (322)
T ss_dssp H----HHTTTGG---------GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSC
T ss_pred H----Hhhcccc---------hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccC
Confidence 1 1111100 011122222333334567899999997431 1233433332 233
Q ss_pred CCcEEEEEeCchhHHh-hc-CCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCC-hHHHHHHHh
Q 037627 309 NGSRVIITTRIKEVAE-RS-DENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGL-PLAIVVLGG 384 (858)
Q Consensus 309 ~gs~ilvTtR~~~~~~-~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~-Plai~~~~~ 384 (858)
.+..||.||....... .. ......+.+...+.++-.+++...+.......+ ......|++.+.|. +-.|..+..
T Consensus 153 ~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT--KEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC--HHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred CceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC--HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4566666776542211 00 011156788899999999999988765432212 34567888998874 545555443
No 179
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.36 E-value=5.3e-06 Score=87.65 Aligned_cols=186 Identities=13% Similarity=0.079 Sum_probs=104.2
Q ss_pred cccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccc---
Q 037627 182 DDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINV--- 258 (858)
Q Consensus 182 ~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--- 258 (858)
++..+.+...+..+. -.+.+.++|++|+|||++|+.+++...-...-+ ..+.......+.+...-....
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-------~~~c~~c~~c~~~~~~~~~d~~~~ 79 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQG-------HKSCGHCRGCQLMQAGTHPDYYTL 79 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-------TBCCSCSHHHHHHHHTCCTTEEEE
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-------CCCCCCCHHHHHHhcCCCCCEEEE
Confidence 344566666665442 345789999999999999999986311110000 000000011111111000000
Q ss_pred cch-hhhhccHHHHHHHHHHH----hcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCchh-HHhhcCCCC
Q 037627 259 LTR-ELEEMREEDLERYLHNC----LQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRIKE-VAERSDENA 330 (858)
Q Consensus 259 ~~~-~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~-~~~~~~~~~ 330 (858)
.+. .......+++.+.+... ..+++-++|+|+++.. +....+...+.....++.+|++|.+.. +........
T Consensus 80 ~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc 159 (334)
T 1a5t_A 80 APEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC 159 (334)
T ss_dssp CCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTS
T ss_pred eccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcc
Confidence 000 00112223333222221 1256789999999865 345667777766556777777776653 333222333
Q ss_pred ceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 037627 331 YAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVL 382 (858)
Q Consensus 331 ~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 382 (858)
..+.+.+++.++..+++.+.. .. . ++.+..+++.++|.|..+..+
T Consensus 160 ~~~~~~~~~~~~~~~~L~~~~--~~--~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 160 RLHYLAPPPEQYAVTWLSREV--TM--S---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EEEECCCCCHHHHHHHHHHHC--CC--C---HHHHHHHHHHTTTCHHHHHHT
T ss_pred eeeeCCCCCHHHHHHHHHHhc--CC--C---HHHHHHHHHHcCCCHHHHHHH
Confidence 689999999999999998875 11 1 355678999999999766544
No 180
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.36 E-value=1.3e-06 Score=95.52 Aligned_cols=176 Identities=15% Similarity=0.112 Sum_probs=102.8
Q ss_pred CceeeccccH---HHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHH
Q 037627 176 GNVVGFDDDV---SKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIR 252 (858)
Q Consensus 176 ~~~vGr~~~~---~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 252 (858)
..+||.+..+ ..+...+..+. .+.+.|+|++|+||||+|+.+++ .....| +.++.......-++.++.
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~--~~~~~f-----~~l~a~~~~~~~ir~~~~ 96 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR--YANADV-----ERISAVTSGVKEIREAIE 96 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHH--HTTCEE-----EEEETTTCCHHHHHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHH--HhCCCe-----EEEEeccCCHHHHHHHHH
Confidence 5689988877 67777776654 46899999999999999999997 333332 222221111111111111
Q ss_pred hccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh--hHHHHHhhCCCCCCCcEEEE-EeCchh--HHhhcC
Q 037627 253 SFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE--TWESLKRAFPDNKNGSRVII-TTRIKE--VAERSD 327 (858)
Q Consensus 253 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~--~~~~l~~~l~~~~~gs~ilv-TtR~~~--~~~~~~ 327 (858)
. .......+++.+|++|+++... ..+.+...+.. + ...+|. ||.+.. +.....
T Consensus 97 ~--------------------a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~ 154 (447)
T 3pvs_A 97 R--------------------ARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALL 154 (447)
T ss_dssp H--------------------HHHHHHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHH
T ss_pred H--------------------HHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHh
Confidence 1 0011124678899999998653 23334433333 1 234444 444442 111111
Q ss_pred CCCceeecCCCChhHHHHHHHHHhcCCC-----CCChhHHHHHHHHHHHcCCChHHHHHH
Q 037627 328 ENAYAHKLRFLRSDESWELFCEKAFRKS-----NGSEGLEKLGREMVEKCRGLPLAIVVL 382 (858)
Q Consensus 328 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~-----~~~~~~~~~~~~I~~~~~G~Plai~~~ 382 (858)
.....+.+.+++.++..+++.+.+.... ......++....|++.++|.+..+..+
T Consensus 155 sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 155 SRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred CceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 2225788999999999999988875421 111122466788899999998765544
No 181
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.35 E-value=1.3e-06 Score=91.52 Aligned_cols=158 Identities=17% Similarity=0.169 Sum_probs=89.1
Q ss_pred ceeeccccHHHHHHHHhcC-------------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCH
Q 037627 177 NVVGFDDDVSKLLAKLLNK-------------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDT 243 (858)
Q Consensus 177 ~~vGr~~~~~~l~~~L~~~-------------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 243 (858)
.++|.+..++.+.+.+... ......+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 4788888888877665321 234557999999999999999988763211111111122333211
Q ss_pred HHHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCC-----------hhhHHHHHhhCCCCCCCcE
Q 037627 244 KDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQ-----------KETWESLKRAFPDNKNGSR 312 (858)
Q Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~-----------~~~~~~l~~~l~~~~~gs~ 312 (858)
.+..... ......+...+... +.-+|++|+++. .+....+...+.....+..
T Consensus 109 ---------~l~~~~~-----g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ 171 (309)
T 3syl_A 109 ---------DLVGQYI-----GHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLV 171 (309)
T ss_dssp ---------GTCCSST-----TCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCE
T ss_pred ---------Hhhhhcc-----cccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEE
Confidence 0000000 00011222222222 345999999983 2344555555554555677
Q ss_pred EEEEeCchhHHhhc--C-----CCCceeecCCCChhHHHHHHHHHhcCC
Q 037627 313 VIITTRIKEVAERS--D-----ENAYAHKLRFLRSDESWELFCEKAFRK 354 (858)
Q Consensus 313 ilvTtR~~~~~~~~--~-----~~~~~~~l~~L~~~e~~~l~~~~~~~~ 354 (858)
+|+||......... . .....+.+.+++.++..+++...+...
T Consensus 172 ~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~ 220 (309)
T 3syl_A 172 VILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQ 220 (309)
T ss_dssp EEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred EEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHc
Confidence 88888654321110 0 011678999999999999998876543
No 182
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.34 E-value=2.7e-05 Score=81.59 Aligned_cols=184 Identities=17% Similarity=0.143 Sum_probs=104.4
Q ss_pred CceeeccccHHHHHHHHhc----------CCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHH
Q 037627 176 GNVVGFDDDVSKLLAKLLN----------KEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKD 245 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 245 (858)
++++|.+..++.+.+.+.. .....+.+.|+|++|+|||+||+.+++. ... ...+.++.+.-..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~--~~~~~i~~~~l~~--- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--ANN--STFFSISSSDLVS--- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH--TTS--CEEEEEECCSSCC---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH--cCC--CcEEEEEhHHHHh---
Confidence 5688999888888776632 1123468999999999999999999973 311 1123333332111
Q ss_pred HHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh---------h----hHHHHHhhCCC---CCC
Q 037627 246 LLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK---------E----TWESLKRAFPD---NKN 309 (858)
Q Consensus 246 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~---------~----~~~~l~~~l~~---~~~ 309 (858)
... ......+...+...-..++.+|+||+++.. + ....+...+.. ...
T Consensus 85 -----------~~~-----g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 85 -----------KWL-----GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp -----------SSC-----CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred -----------hhh-----hHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence 000 001122222222223467889999999754 1 12233333221 234
Q ss_pred CcEEEEEeCchhH-Hhhc-CCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCC-hHHHHHHHh
Q 037627 310 GSRVIITTRIKEV-AERS-DENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGL-PLAIVVLGG 384 (858)
Q Consensus 310 gs~ilvTtR~~~~-~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~-Plai~~~~~ 384 (858)
+..||.||..... .... ......+.+...+.++-.+++............ +.....|++.+.|+ +-.|..+..
T Consensus 149 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~--~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT--EADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC--HHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5556666654421 1110 011156788889999999999887754332211 35568899999987 444655544
No 183
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.31 E-value=1.5e-05 Score=86.26 Aligned_cols=183 Identities=11% Similarity=0.067 Sum_probs=102.3
Q ss_pred CCceeeccccHHHHHHHHhcC----------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHH
Q 037627 175 EGNVVGFDDDVSKLLAKLLNK----------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTK 244 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 244 (858)
-..++|.+..++.+.+.+... ....+.+.|+|++|+|||+||+.++. ..... .+.++.+.-...
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~--~~~~~---~~~v~~~~l~~~- 187 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA--ESNAT---FFNISAASLTSK- 187 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH--HTTCE---EEEECSCCC----
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH--hhcCc---EEEeeHHHhhcc-
Confidence 457999999999998887321 12346899999999999999999987 33222 233333222110
Q ss_pred HHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh-------------hhHHHHHhhCC----CC
Q 037627 245 DLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK-------------ETWESLKRAFP----DN 307 (858)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-------------~~~~~l~~~l~----~~ 307 (858)
. .+ .....+...+...-...+.+|+||+++.. .....+...+. ..
T Consensus 188 -~-------~g----------~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 249 (389)
T 3vfd_A 188 -Y-------VG----------EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAG 249 (389)
T ss_dssp ----------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC---
T ss_pred -c-------cc----------hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccC
Confidence 0 00 00111222222222345679999999743 01122222221 12
Q ss_pred CCCcEEEEEeCchh-HHhhc-CCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChH-HHHHHH
Q 037627 308 KNGSRVIITTRIKE-VAERS-DENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPL-AIVVLG 383 (858)
Q Consensus 308 ~~gs~ilvTtR~~~-~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~~~~ 383 (858)
.....||.||.... +.... ......+.+...+.++..+++...+........ .+....|++.+.|..- ++..+.
T Consensus 250 ~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~--~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 250 DDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT--QKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp --CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC--HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCHHHHHHHH
Confidence 23455666665432 11111 111146889999999999999887755433222 3566789999988654 555543
No 184
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.30 E-value=6.8e-06 Score=89.34 Aligned_cols=121 Identities=12% Similarity=0.001 Sum_probs=53.1
Q ss_pred CCCCCccEEEecccCCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECCCCccccce
Q 037627 725 SDCSYLIDLRLSGKIEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEI 804 (858)
Q Consensus 725 ~~l~~L~~L~l~~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~ 804 (858)
..+..|+.+.+..+...++...+..+.+|+.+.+..+.+ ....+..+.+|+.+.+..+ +.... ......+.+|+.
T Consensus 250 ~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~-~~aF~~c~~L~~ 324 (394)
T 4fs7_A 250 YGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIG-EEAFESCTSLVS 324 (394)
T ss_dssp TTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEEC-TTTTTTCTTCCE
T ss_pred cccccceeEEcCCCcceeeccccccccccceeccCceee---ccccccccccccccccccc-cceec-hhhhcCCCCCCE
Confidence 334444444444443333333333344555554444322 1234556677777776533 22100 011223456666
Q ss_pred eeecCCCCCCeEEEc-cCccccccceeecccccCC-CCc-ccCCCCCCceecC
Q 037627 805 LQLIDLNDLAQWQVE-DGAMPILRGLRVTNAYKLK-IPE-RLKSIPLPTEWEC 854 (858)
Q Consensus 805 L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~L~-lp~-~l~~L~~L~~~~c 854 (858)
+.+.+ .++.+... +..+++|+.+.+..+ ++ ++. .+..+..|+.+..
T Consensus 325 i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 325 IDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp ECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEE
T ss_pred EEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEE
Confidence 66642 24433211 223456666666433 44 333 3444444444433
No 185
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.28 E-value=1.2e-05 Score=85.52 Aligned_cols=180 Identities=16% Similarity=0.129 Sum_probs=103.5
Q ss_pred CceeeccccHHHHHHHHhcC----------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHH
Q 037627 176 GNVVGFDDDVSKLLAKLLNK----------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKD 245 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 245 (858)
..++|.+..++.+.+.+..+ ....+-+.|+|++|+|||+||+.+++ ..... .+.++.+ +
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~--~~~~~---~~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANST---FFSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH--HHTCE---EEEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH--HhCCC---EEEeeHH------H
Confidence 46899999999988876321 12235689999999999999999998 33322 2223221 1
Q ss_pred HHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh-------------hHHHHHhhCC---CCCC
Q 037627 246 LLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE-------------TWESLKRAFP---DNKN 309 (858)
Q Consensus 246 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-------------~~~~l~~~l~---~~~~ 309 (858)
+...... .....+...+...-..++.+|+||+++... ....+...+. ....
T Consensus 120 ----l~~~~~g---------~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 120 ----LVSKWMG---------ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp ----HHSCC------------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred ----Hhhhhcc---------hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 1111100 011122222222234678899999998532 1233333222 2234
Q ss_pred CcEEEEEeCchh-----HHhhcCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCC-hHHHHHHH
Q 037627 310 GSRVIITTRIKE-----VAERSDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGL-PLAIVVLG 383 (858)
Q Consensus 310 gs~ilvTtR~~~-----~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~-Plai~~~~ 383 (858)
+..||.||.... +.. .....+.+...+.++-.+++...+.......+ ......|++.+.|. +-.|..+.
T Consensus 187 ~v~vI~atn~~~~ld~al~r---Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~--~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRR---RFERRIYIPLPDLAARTTMFEINVGDTPSVLT--KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHH---TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC--HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHc---ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHcCCCCHHHHHHHH
Confidence 556666775442 222 11156788999999999999888754432211 34567889999884 54555554
Q ss_pred h
Q 037627 384 G 384 (858)
Q Consensus 384 ~ 384 (858)
.
T Consensus 262 ~ 262 (355)
T 2qp9_X 262 K 262 (355)
T ss_dssp H
T ss_pred H
Confidence 3
No 186
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.27 E-value=1.1e-06 Score=94.00 Aligned_cols=96 Identities=20% Similarity=0.151 Sum_probs=62.0
Q ss_pred eeeccCC-ccccccccCCCCCccccccCCcccceEeccC-CcccccC-cccccCCCCcEEeccccccccccchhhhcccc
Q 037627 562 VLNFEGV-VSNVLCSVGGCYNLPEEMVKLVNLKYLRLTN-AHIDVIP-SCIAKLQRLQTLDISGNMAFMELPREICELKE 638 (858)
Q Consensus 562 ~L~L~~~-~~~~~~~~~~~~~lp~~~~~l~~L~~L~L~~-n~i~~lp-~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~ 638 (858)
.++++++ . +. .+|. +..+++|++|+|++ |.++.+| ..|.++++|++|+|++|.+.+..|..|..|++
T Consensus 12 ~v~~~~~n~-------l~--~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 81 (347)
T 2ifg_A 12 GLRCTRDGA-------LD--SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81 (347)
T ss_dssp CEECCSSCC-------CT--TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSC
T ss_pred EEEcCCCCC-------CC--ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcC
Confidence 4466665 5 65 7787 88888888888885 8888776 45778888888888888665655666677776
Q ss_pred ccccc---ccccccc--CCCCCccccccceeeccc
Q 037627 639 LRHLI---GNFTGTL--NIENLSNLQTLKYVERGS 668 (858)
Q Consensus 639 L~~L~---~~~~~~~--~~~~l~~L~~L~l~~~~~ 668 (858)
|++|+ |.+.... .+..++ |+.|++.+|..
T Consensus 82 L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 82 LSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp CCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred CCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCc
Confidence 66662 3332221 222233 66666666653
No 187
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.27 E-value=9.7e-07 Score=94.34 Aligned_cols=87 Identities=23% Similarity=0.125 Sum_probs=37.1
Q ss_pred cccccCCCeeEEee-cccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCCCChhhhhccC
Q 037627 674 PEKLVNLRDLRIIS-KYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEKLPEDLHEVLP 751 (858)
Q Consensus 674 ~~~l~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~p~~~~~~l~ 751 (858)
+..+++|+.|++++ |......+ ..+..+++|+.|+|++|.+..+ ....|..+++|+.|+|++| +..+|..++..+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~- 103 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFNALESLSWKTVQGL- 103 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-
T ss_pred CCCCCCeeEEEccCCCCCCCcCh-hHhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCCccceeCHHHcccC-
Confidence 33444455555543 43333332 4444555555555554444332 1223344444444444443 334444333321
Q ss_pred CccEEEEecccC
Q 037627 752 NLECLSLKKSHL 763 (858)
Q Consensus 752 ~L~~L~L~~n~l 763 (858)
+|+.|+|.+|.+
T Consensus 104 ~L~~l~l~~N~~ 115 (347)
T 2ifg_A 104 SLQELVLSGNPL 115 (347)
T ss_dssp CCCEEECCSSCC
T ss_pred CceEEEeeCCCc
Confidence 244444444444
No 188
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.26 E-value=7.7e-06 Score=86.25 Aligned_cols=167 Identities=16% Similarity=0.139 Sum_probs=93.1
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhh
Q 037627 186 SKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEE 265 (858)
Q Consensus 186 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 265 (858)
..+......+......+.|+|++|+||||||+.+++. ....-..+++++.. .+...+...+...
T Consensus 24 ~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~~------~~~~~~~~~~~~~-------- 87 (324)
T 1l8q_A 24 EVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSAD------DFAQAMVEHLKKG-------- 87 (324)
T ss_dssp HHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEHH------HHHHHHHHHHHHT--------
T ss_pred HHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEHH------HHHHHHHHHHHcC--------
Confidence 3444444443334567999999999999999999973 32111234555532 2333333322111
Q ss_pred ccHHHHHHHHHHHhcCceEEEEEEcCCChh---h-HHHHHhhCCC-CCCCcEEEEEeCchhH---------HhhcCCCCc
Q 037627 266 MREEDLERYLHNCLQGKSYLVVVDDAWQKE---T-WESLKRAFPD-NKNGSRVIITTRIKEV---------AERSDENAY 331 (858)
Q Consensus 266 ~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~---~-~~~l~~~l~~-~~~gs~ilvTtR~~~~---------~~~~~~~~~ 331 (858)
..+. +...+ .+..+|++||++... . .+.+...+.. ...+..||+||..... ....... .
T Consensus 88 -~~~~----~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~-~ 160 (324)
T 1l8q_A 88 -TINE----FRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGG-I 160 (324)
T ss_dssp -CHHH----HHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTS-E
T ss_pred -cHHH----HHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCc-e
Confidence 1111 12222 236799999997543 1 2333333221 1235568887764321 1111111 4
Q ss_pred eeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHH
Q 037627 332 AHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAI 379 (858)
Q Consensus 332 ~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 379 (858)
.+.+.+ +.++..+++...+.......+ ++....|++.+ |.+-.+
T Consensus 161 ~i~l~~-~~~e~~~il~~~~~~~~~~l~--~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 161 LVEIEL-DNKTRFKIIKEKLKEFNLELR--KEVIDYLLENT-KNVREI 204 (324)
T ss_dssp EEECCC-CHHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHC-SSHHHH
T ss_pred EEEeCC-CHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHhC-CCHHHH
Confidence 689999 999999999988754333222 45677888888 877543
No 189
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.23 E-value=5.2e-06 Score=88.18 Aligned_cols=176 Identities=12% Similarity=0.140 Sum_probs=103.1
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCcccc-CCcc-eEEEEEeCCCCCHHHHHHHHHHh
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVK-NKFD-RCAWVSVSQDYDTKDLLLRIIRS 253 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~-~~f~-~~~wv~~~~~~~~~~~~~~i~~~ 253 (858)
..++|.+..++.+...+..+. .+.+.++|++|+||||+|+.++.. .. ..+. .+..++.+...... ..++.+.
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~--l~~~~~~~~~~~~~~~~~~~~~-~ir~~i~- 98 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALARE--IYGKNYSNMVLELNASDDRGID-VVRNQIK- 98 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHH--HHTTSHHHHEEEECTTSCCSHH-HHHTHHH-
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHH--HcCCCccceEEEEcCcccccHH-HHHHHHH-
Confidence 457898888888888887654 223899999999999999999873 21 1111 12222222211111 1111111
Q ss_pred ccccccchhhhhccHHHHHHHHHHH---hcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCchh-HHhhcC
Q 037627 254 FKINVLTRELEEMREEDLERYLHNC---LQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRIKE-VAERSD 327 (858)
Q Consensus 254 l~~~~~~~~~~~~~~~~~~~~l~~~---l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~-~~~~~~ 327 (858)
.+.+. +.+.+-++|+|+++.. +..+.+...+.......++|++|.... +.....
T Consensus 99 --------------------~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~ 158 (340)
T 1sxj_C 99 --------------------DFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALL 158 (340)
T ss_dssp --------------------HHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred --------------------HHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHH
Confidence 11110 1234678999999754 334445444433344566777765442 211111
Q ss_pred CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHH
Q 037627 328 ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAI 379 (858)
Q Consensus 328 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai 379 (858)
.....+.+.+++.++..+.+.+.+.......+ ++..+.|++.++|.+--+
T Consensus 159 sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~--~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 159 SQCTRFRFQPLPQEAIERRIANVLVHEKLKLS--PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHTTTCCBC--HHHHHHHHHHHTTCHHHH
T ss_pred hhceeEeccCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 22257899999999999988877643322211 456788999999998744
No 190
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.23 E-value=2.3e-05 Score=81.49 Aligned_cols=180 Identities=13% Similarity=0.094 Sum_probs=101.4
Q ss_pred CCceeeccccHHHHHHHHhcC----------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHH
Q 037627 175 EGNVVGFDDDVSKLLAKLLNK----------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTK 244 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 244 (858)
-..++|.+..++.+.+.+..+ ....+.+.|+|++|+|||++|+.++. ..... .+.++.+....
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~--~~~~~---~~~i~~~~l~~-- 92 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT--ECSAT---FLNISAASLTS-- 92 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH--HTTCE---EEEEESTTTSS--
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH--HhCCC---eEEeeHHHHhh--
Confidence 356899999999988876431 12346899999999999999999997 33222 23344332211
Q ss_pred HHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh-------------hHHHHHh---hCCCC-
Q 037627 245 DLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE-------------TWESLKR---AFPDN- 307 (858)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-------------~~~~l~~---~l~~~- 307 (858)
..... ........+......++.+|++|+++... ....+.. .++..
T Consensus 93 ------------~~~~~-----~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 155 (297)
T 3b9p_A 93 ------------KYVGD-----GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP 155 (297)
T ss_dssp ------------SSCSC-----HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC---
T ss_pred ------------cccch-----HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC
Confidence 00000 01111222222234567899999996431 1112222 22221
Q ss_pred -CCCcEEEEEeCchh-----HHhhcCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChH-HHH
Q 037627 308 -KNGSRVIITTRIKE-----VAERSDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPL-AIV 380 (858)
Q Consensus 308 -~~gs~ilvTtR~~~-----~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-ai~ 380 (858)
+.+..||.||.... +..... ..+.+...+.++..+++...+........ .+....|++.+.|.+- ++.
T Consensus 156 ~~~~v~vi~~tn~~~~l~~~l~~R~~---~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~~la~~~~g~~~~~l~ 230 (297)
T 3b9p_A 156 DGDRIVVLAATNRPQELDEAALRRFT---KRVYVSLPDEQTRELLLNRLLQKQGSPLD--TEALRRLAKITDGYSGSDLT 230 (297)
T ss_dssp ---CEEEEEEESCGGGBCHHHHHHCC---EEEECCCCCHHHHHHHHHHHHGGGSCCSC--HHHHHHHHHHTTTCCHHHHH
T ss_pred CCCcEEEEeecCChhhCCHHHHhhCC---eEEEeCCcCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCHHHHH
Confidence 23455666776542 222111 46777888888888888776644322111 3456788899999875 554
Q ss_pred HHH
Q 037627 381 VLG 383 (858)
Q Consensus 381 ~~~ 383 (858)
.+.
T Consensus 231 ~l~ 233 (297)
T 3b9p_A 231 ALA 233 (297)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 191
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.21 E-value=2.3e-07 Score=86.24 Aligned_cols=88 Identities=9% Similarity=0.036 Sum_probs=67.8
Q ss_pred CCccEEEEecccCCCCCccccCCCCCCCeeEeeccc-cCCceEEECCC---CccccceeeecCCCCCCeEEE-ccCcccc
Q 037627 751 PNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKS-YGGKKMICTTK---GFHLLEILQLIDLNDLAQWQV-EDGAMPI 825 (858)
Q Consensus 751 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~-~~~~l~~ 825 (858)
.+|+.|+|++|.++......+.++++|+.|+|++|. +++..+..... ..++|++|++++|+++++-.. ....+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 579999999999888777888999999999999985 55433221111 135899999999998887432 2346899
Q ss_pred ccceeecccccCC
Q 037627 826 LRGLRVTNAYKLK 838 (858)
Q Consensus 826 L~~L~l~~c~~L~ 838 (858)
|+.|++++|+.++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 9999999999876
No 192
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.18 E-value=4.1e-06 Score=91.11 Aligned_cols=229 Identities=13% Similarity=0.056 Sum_probs=117.5
Q ss_pred cccccCCCCcEEeccccccccccchhhhcccccccccc--cc--ccccCCCCCccccccceeecccccccCcccccCCCe
Q 037627 607 SCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIG--NF--TGTLNIENLSNLQTLKYVERGSWAEINPEKLVNLRD 682 (858)
Q Consensus 607 ~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~--~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~ 682 (858)
..|.++++|+.+.+..+ ....-...|..+.+|+.+.. +. .+...+.++..|+.+.+..+............+|+.
T Consensus 156 ~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~ 234 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKN 234 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCE
T ss_pred hhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCCceEeehhhcccCCCce
Confidence 34667777888777665 33333445666777776622 11 223356677777777665544322222333456666
Q ss_pred eEEeecccccccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEecccCCCCChhhhhccCCccEEEEeccc
Q 037627 683 LRIISKYQEEEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGKIEKLPEDLHEVLPNLECLSLKKSH 762 (858)
Q Consensus 683 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~p~~~~~~l~~L~~L~L~~n~ 762 (858)
+.+.... ..... ..+..+..|+.+.+..+.. .+ ....+..++.|+.+.+.... ++...+..+.+|+.+.+.++
T Consensus 235 i~ip~~~-~~i~~-~~f~~~~~l~~~~~~~~~~-~i-~~~~F~~~~~l~~~~~~~~~--i~~~~F~~~~~L~~i~l~~~- 307 (394)
T 4fs7_A 235 IIIPDSF-TELGK-SVFYGCTDLESISIQNNKL-RI-GGSLFYNCSGLKKVIYGSVI--VPEKTFYGCSSLTEVKLLDS- 307 (394)
T ss_dssp EEECTTC-CEECS-STTTTCSSCCEEEECCTTC-EE-CSCTTTTCTTCCEEEECSSE--ECTTTTTTCTTCCEEEECTT-
T ss_pred EEECCCc-eeccc-ccccccccceeEEcCCCcc-ee-eccccccccccceeccCcee--eccccccccccccccccccc-
Confidence 6664321 11222 5666777777777754422 12 23345566667666655431 23333333677777777654
Q ss_pred CCCCCccccCCCCCCCeeEeeccccCCceEEECCCCccccceeeecCCCCCCeEEE-ccCccccccceeecccccCC-CC
Q 037627 763 LKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLLEILQLIDLNDLAQWQV-EDGAMPILRGLRVTNAYKLK-IP 840 (858)
Q Consensus 763 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~L~-lp 840 (858)
++.....+|.++++|+.++|..+ ++... .....++.+|+.+.+.. +++.+.. .+..+++|+.+++..+ ++ +.
T Consensus 308 i~~I~~~aF~~c~~L~~i~lp~~-v~~I~-~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~~--~~~~~ 381 (394)
T 4fs7_A 308 VKFIGEEAFESCTSLVSIDLPYL-VEEIG-KRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPKR--LEQYR 381 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CCEEC-TTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEGG--GGGGG
T ss_pred cceechhhhcCCCCCCEEEeCCc-ccEEh-HHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECCC--CEEhh
Confidence 44444566777777777777532 32100 01122345566665542 2443321 1233456666666433 33 33
Q ss_pred cccCCCCCC
Q 037627 841 ERLKSIPLP 849 (858)
Q Consensus 841 ~~l~~L~~L 849 (858)
..+.+.+.|
T Consensus 382 ~~F~~c~~L 390 (394)
T 4fs7_A 382 YDFEDTTKF 390 (394)
T ss_dssp GGBCTTCEE
T ss_pred heecCCCCC
Confidence 344444433
No 193
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.17 E-value=1.8e-06 Score=82.79 Aligned_cols=46 Identities=22% Similarity=0.321 Sum_probs=39.1
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcC
Q 037627 175 EGNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
-..++||+.+++.+.+.+.... .+.+.|+|++|+|||++|+.+++.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999986643 457799999999999999999873
No 194
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.16 E-value=3.8e-05 Score=84.31 Aligned_cols=185 Identities=16% Similarity=0.144 Sum_probs=104.1
Q ss_pred CCceeeccccHHHHHHHHhc----------CCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHH
Q 037627 175 EGNVVGFDDDVSKLLAKLLN----------KEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTK 244 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 244 (858)
-++++|.+..++.+.+.+.. .....+.+.|+|++|+|||+||+.++.. .. ...++.++...
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~~----~~~~~~v~~~~--- 203 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--AN----NSTFFSISSSD--- 203 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--CC----SSEEEEECCC----
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--cC----CCCEEEEeHHH---
Confidence 35689999999988887631 1123468999999999999999999973 31 11233333221
Q ss_pred HHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh-------------hhHHHHHhhCCC---CC
Q 037627 245 DLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK-------------ETWESLKRAFPD---NK 308 (858)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-------------~~~~~l~~~l~~---~~ 308 (858)
+.... .+.. ......+.. ..-..++.+|+||+++.. .....+...+.. ..
T Consensus 204 -l~~~~---~g~~-------~~~~~~~f~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 269 (444)
T 2zan_A 204 -LVSKW---LGES-------EKLVKNLFQ---LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 269 (444)
T ss_dssp ------------C-------CCTHHHHHH---HHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCC
T ss_pred -HHhhh---cchH-------HHHHHHHHH---HHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCC
Confidence 11110 0100 011122222 222356789999999854 112344444432 23
Q ss_pred CCcEEEEEeCchhHH-hh-cCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCC-hHHHHHHHh
Q 037627 309 NGSRVIITTRIKEVA-ER-SDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGL-PLAIVVLGG 384 (858)
Q Consensus 309 ~gs~ilvTtR~~~~~-~~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~-Plai~~~~~ 384 (858)
.+..||.||..+... .. .......+.+...+.++..+++...+.......+ ......|++.+.|. +-.|..+..
T Consensus 270 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~--~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 270 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT--EADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp SSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC--HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 456677677654211 11 1111146788888888888999887754322111 34567889999885 445555443
No 195
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.15 E-value=2.6e-07 Score=98.22 Aligned_cols=156 Identities=21% Similarity=0.204 Sum_probs=96.5
Q ss_pred cccccCCCeeEEeecccc---------cccchhhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEeccc-CCC-C
Q 037627 674 PEKLVNLRDLRIISKYQE---------EEFSFKSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGK-IEK-L 742 (858)
Q Consensus 674 ~~~l~~L~~L~l~~~~~~---------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~-~ 742 (858)
...+++|+.|.+.++... ..+. ..+..+|+|+.|+|++|.... ++.+. +++|++|+|..+ +.. .
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l~---l~~~~-~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNLS---IGKKP-RPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTCB---CCSCB-CTTCSEEEEECSBCCHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCce---ecccc-CCCCcEEEEecCCCChHH
Confidence 446789999988664321 1233 556778999999998873222 23333 789999999864 311 0
Q ss_pred Chhhh-hccCCccEEEEecc--cCCCCC-c----ccc--CCCCCCCeeEeeccccCCce--EEECCCCccccceeeecCC
Q 037627 743 PEDLH-EVLPNLECLSLKKS--HLKEDP-M----PKL--EKLPNLTILDLGLKSYGGKK--MICTTKGFHLLEILQLIDL 810 (858)
Q Consensus 743 p~~~~-~~l~~L~~L~L~~n--~l~~~~-~----~~l--~~l~~L~~L~L~~n~~~~~~--~~~~~~~~~~L~~L~l~~~ 810 (858)
...+. ..+|+|+.|+|+.+ ...+.. . ..+ ..+|+|+.|+|++|.+.+.. .......+|+|+.|+++.
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~- 288 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA- 288 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-
Confidence 11122 13799999999642 211110 1 122 35899999999988775321 112224689999999985
Q ss_pred CCCCeE-----EEccCccccccceeecccc
Q 037627 811 NDLAQW-----QVEDGAMPILRGLRVTNAY 835 (858)
Q Consensus 811 ~~l~~~-----~~~~~~l~~L~~L~l~~c~ 835 (858)
+.+... ......+++|+.|++++|.
T Consensus 289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 289 GVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp SCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 456542 1112357899999999885
No 196
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.14 E-value=1.6e-08 Score=108.73 Aligned_cols=131 Identities=14% Similarity=0.102 Sum_probs=59.1
Q ss_pred ccccccceeeccccccc---CcccccCCCeeEEeecccccccchhhh-----hcCCCCCeEEeeccCCcccc---CCCCC
Q 037627 656 SNLQTLKYVERGSWAEI---NPEKLVNLRDLRIISKYQEEEFSFKSI-----AYLKNLQLLSIRLSDDTCFD---SLQPL 724 (858)
Q Consensus 656 ~~L~~L~l~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~---~~~~l 724 (858)
++|++|++++|...... ....+++|+.|++++|....... ..+ ...++|+.|+|++|.+...+ ....+
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~-~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEAC-KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHH-HHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHH-HHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 46666666666532211 11234556666666665332221 222 12455666666665443211 00112
Q ss_pred CCCCCccEEEeccc-CCC-----CChhhhhccCCccEEEEecccCCCCC----ccccCCCCCCCeeEeeccccC
Q 037627 725 SDCSYLIDLRLSGK-IEK-----LPEDLHEVLPNLECLSLKKSHLKEDP----MPKLEKLPNLTILDLGLKSYG 788 (858)
Q Consensus 725 ~~l~~L~~L~l~~~-~~~-----~p~~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~~~ 788 (858)
..+++|++|+|++| ++. ++..+.. +++|+.|+|++|.++... ...+...++|++|+|++|.++
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~-~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDR-NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGG-CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhc-CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 33455666666654 211 1222222 355666666666554321 122334455666666665554
No 197
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.13 E-value=3.1e-06 Score=77.28 Aligned_cols=113 Identities=12% Similarity=0.095 Sum_probs=66.8
Q ss_pred ceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccc
Q 037627 177 NVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKI 256 (858)
Q Consensus 177 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 256 (858)
.++|+...++++.+.+........-|.|+|++|+|||++|+.+++.... ... ..+ ++++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~-~~~-~~v-~~~~~~~~~------------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRN-AQG-EFV-YRELTPDNA------------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTT-TTS-CCE-EEECCTTTS-------------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCc-cCC-CEE-EECCCCCcc-------------
Confidence 5789999999999888653333456889999999999999999873211 111 223 655543221
Q ss_pred cccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh--hHHHHHhhCCCCCCCcEEEEEeCch
Q 037627 257 NVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE--TWESLKRAFPDNKNGSRVIITTRIK 320 (858)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~--~~~~l~~~l~~~~~gs~ilvTtR~~ 320 (858)
. ... ..+.. .+.-.|++|+++... ....+...+.......++|.||...
T Consensus 66 ~---------~~~---~~~~~---a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 P---------QLN---DFIAL---AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp S---------CHH---HHHHH---HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred h---------hhh---cHHHH---cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 0 000 01111 123478999998653 3344555544444456788777643
No 198
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.08 E-value=3e-05 Score=80.55 Aligned_cols=176 Identities=13% Similarity=0.128 Sum_probs=101.8
Q ss_pred CceeeccccHHHHHHHHhcC-----------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHH
Q 037627 176 GNVVGFDDDVSKLLAKLLNK-----------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTK 244 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 244 (858)
.+++|.+..++++.+.+... -...+.+.|+|++|+|||+||+.++. ..... ++.+. ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~--~~~~~-----~i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQAN-----FISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH--HTTCE-----EEEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH--HhCCC-----EEEEE----hH
Confidence 46899999888888776431 23456899999999999999999997 33322 22332 22
Q ss_pred HHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh----------------hHHHHHhhCCC--
Q 037627 245 DLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE----------------TWESLKRAFPD-- 306 (858)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~----------------~~~~l~~~l~~-- 306 (858)
++..... ... ...+...+.......+.+|++|+++... ....+...+..
T Consensus 84 ~l~~~~~----g~~---------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~ 150 (301)
T 3cf0_A 84 ELLTMWF----GES---------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 150 (301)
T ss_dssp HHHHHHH----TTC---------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC
T ss_pred HHHhhhc----Cch---------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc
Confidence 2222211 110 1112233333334568999999997421 12344443321
Q ss_pred CCCCcEEEEEeCchhHH-hh-cC--CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHH
Q 037627 307 NKNGSRVIITTRIKEVA-ER-SD--ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLA 378 (858)
Q Consensus 307 ~~~gs~ilvTtR~~~~~-~~-~~--~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pla 378 (858)
...+..||.||...... .. .. .....+.+...+.++-.+++...........+ .....+++.+.|+|-+
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~---~~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 151 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD---VDLEFLAKMTNGFSGA 223 (301)
T ss_dssp TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSS---CCHHHHHHTCSSCCHH
T ss_pred CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCcc---chHHHHHHHcCCCCHH
Confidence 23356677777655322 11 11 12257889999999999999877654332111 1134567778887754
No 199
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.03 E-value=0.0002 Score=75.38 Aligned_cols=173 Identities=20% Similarity=0.174 Sum_probs=94.4
Q ss_pred CceeeccccHHHHHHHHhcC---CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHH
Q 037627 176 GNVVGFDDDVSKLLAKLLNK---EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIR 252 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 252 (858)
+.++|.+..++.+...+..+ +.....+.|+|++|+||||||+.++. .....|. ..+..-.....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~--~l~~~~~---~~sg~~~~~~~-------- 91 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS--ELQTNIH---VTSGPVLVKQG-------- 91 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH--HHTCCEE---EEETTTCCSHH--------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCEE---EEechHhcCHH--------
Confidence 45788887777776666432 22346799999999999999999997 3322221 11111101111
Q ss_pred hccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh--hHHHHHhhCCCC--------C----------CCcE
Q 037627 253 SFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE--TWESLKRAFPDN--------K----------NGSR 312 (858)
Q Consensus 253 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~--~~~~l~~~l~~~--------~----------~gs~ 312 (858)
.+...+ ..+ .++-++++|+++... ..+.+...+... . +...
T Consensus 92 -----------------~l~~~~-~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 92 -----------------DMAAIL-TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp -----------------HHHHHH-HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred -----------------HHHHHH-HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 111111 112 234577888876432 223332211110 0 0122
Q ss_pred EE-EEeCchhHHhhcCCC-CceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 037627 313 VI-ITTRIKEVAERSDEN-AYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVL 382 (858)
Q Consensus 313 il-vTtR~~~~~~~~~~~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 382 (858)
++ .|++...+....... .....+++.+.++..+++.+.+...... ..++.+..|+++++|.|-.+..+
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~--~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVE--IEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHTSTTCHHHHHHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHhcCCChHHHHHH
Confidence 33 244433222111111 1357899999999999999876433222 22567899999999999765444
No 200
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=7.9e-05 Score=78.70 Aligned_cols=175 Identities=15% Similarity=0.115 Sum_probs=101.1
Q ss_pred CCceeeccccHHHHHHHHhc-----------CCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCH
Q 037627 175 EGNVVGFDDDVSKLLAKLLN-----------KEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDT 243 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 243 (858)
=+++.|-++.+++|.+.+.- +-...+-+.++|++|+|||.||+++++ .....| +.++.+.-.+
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~s- 220 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAELVQ- 220 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGGGSC-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHHhhc-
Confidence 35678888888888776532 123456789999999999999999998 333332 3333332211
Q ss_pred HHHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh----------------hHHHHHhhCCC-
Q 037627 244 KDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE----------------TWESLKRAFPD- 306 (858)
Q Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~----------------~~~~l~~~l~~- 306 (858)
.. .......+...+...-...+++|++|+++... ....++..+..
T Consensus 221 -------------k~-----vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 282 (405)
T 4b4t_J 221 -------------KY-----IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF 282 (405)
T ss_dssp -------------SS-----TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT
T ss_pred -------------cc-----cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc
Confidence 00 00011223333333334678999999997430 12233333332
Q ss_pred -CCCCcEEEEEeCchhHH-hh---cCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCCh
Q 037627 307 -NKNGSRVIITTRIKEVA-ER---SDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLP 376 (858)
Q Consensus 307 -~~~gs~ilvTtR~~~~~-~~---~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 376 (858)
...+..||.||..++.. .. .+.....+.++.-+.++-.++|+.+......... . ....|++.+.|+-
T Consensus 283 ~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~d-v--dl~~lA~~t~G~S 354 (405)
T 4b4t_J 283 ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRG-I--NLRKVAEKMNGCS 354 (405)
T ss_dssp TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSS-C--CHHHHHHHCCSCC
T ss_pred CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCcc-C--CHHHHHHHCCCCC
Confidence 23355566677554321 11 1122267889888888888999877654332211 0 1466788888764
No 201
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.97 E-value=7.9e-05 Score=80.14 Aligned_cols=175 Identities=13% Similarity=0.124 Sum_probs=100.6
Q ss_pred CCceeeccccHHHHHHHHhc-----------CCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCH
Q 037627 175 EGNVVGFDDDVSKLLAKLLN-----------KEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDT 243 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 243 (858)
-+++.|-++.+++|.+.+.- +-...+-|.++|++|+|||+||+++++ ..... .+.++.+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~---~~~v~~s~l~s- 253 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGAN---FIFSPASGIVD- 253 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCE---EEEEEGGGTCC-
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCC---EEEEehhhhcc-
Confidence 35678888888888776542 123457899999999999999999998 33333 23344332211
Q ss_pred HHHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh------------h----hHHHHHhhCCC-
Q 037627 244 KDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK------------E----TWESLKRAFPD- 306 (858)
Q Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~------------~----~~~~l~~~l~~- 306 (858)
... ......+...+...-...+++|++|+++.. . .+..++..+..
T Consensus 254 -------------k~~-----Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 315 (437)
T 4b4t_L 254 -------------KYI-----GESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF 315 (437)
T ss_dssp -------------SSS-----SHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS
T ss_pred -------------ccc-----hHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc
Confidence 000 001122223333333467999999999742 0 12334443322
Q ss_pred -CCCCcEEEEEeCchhHHh-hcC-C--CCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCCh
Q 037627 307 -NKNGSRVIITTRIKEVAE-RSD-E--NAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLP 376 (858)
Q Consensus 307 -~~~gs~ilvTtR~~~~~~-~~~-~--~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 376 (858)
...+..||.||..+.... ... . ....+.++.-+.++-.++|..+......... -....|++.+.|+-
T Consensus 316 ~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d---~dl~~lA~~t~G~s 387 (437)
T 4b4t_L 316 DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGE---FDFEAAVKMSDGFN 387 (437)
T ss_dssp SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSC---CCHHHHHHTCCSCC
T ss_pred cCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcc---cCHHHHHHhCCCCC
Confidence 234566777776554322 211 1 1156788888888888888877654332211 01366788888764
No 202
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.97 E-value=6.8e-05 Score=81.36 Aligned_cols=241 Identities=11% Similarity=0.096 Sum_probs=117.9
Q ss_pred ccccCCcccceEeccCCc---ccccC-cccccCCCCcEEeccccccccccchhhhcccccccccc----ccccccCCCCC
Q 037627 584 EEMVKLVNLKYLRLTNAH---IDVIP-SCIAKLQRLQTLDISGNMAFMELPREICELKELRHLIG----NFTGTLNIENL 655 (858)
Q Consensus 584 ~~~~~l~~L~~L~L~~n~---i~~lp-~~l~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~~----~~~~~~~~~~l 655 (858)
..|.+|.+|+.+.+..+. ++.++ ..|.++.+|+.+.+..+ ....-...|..+.+|+.+.. ...+...+..+
T Consensus 81 ~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c 159 (394)
T 4gt6_A 81 NAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGVTSVADGMFSYC 159 (394)
T ss_dssp TTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTCCEECTTTTTTC
T ss_pred HHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccceeeeecccceecc
Confidence 346777778877776653 55553 34566677777666655 33333345566666666521 11122245556
Q ss_pred ccccccceeeccc-ccccCcccccCCCeeEEeecccccccchhhhhcCCCCCeEEeeccC--------------------
Q 037627 656 SNLQTLKYVERGS-WAEINPEKLVNLRDLRIISKYQEEEFSFKSIAYLKNLQLLSIRLSD-------------------- 714 (858)
Q Consensus 656 ~~L~~L~l~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------------------- 714 (858)
.+|+.+.+..+-. .....+. ..+|+.+.+...-. .... ..+..+..+.........
T Consensus 160 ~~L~~i~~~~~~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~-~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (394)
T 4gt6_A 160 YSLHTVTLPDSVTAIEERAFT-GTALTQIHIPAKVT-RIGT-NAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALI 236 (394)
T ss_dssp TTCCEEECCTTCCEECTTTTT-TCCCSEEEECTTCC-EECT-TTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEE
T ss_pred cccccccccceeeEecccccc-ccceeEEEECCccc-cccc-chhhhccccceecccccccccccceeeccccccccccc
Confidence 6666555433211 1111111 13344444432210 0111 233333333333221110
Q ss_pred ----------------CccccCCCCCCCCCCccEEEecccCCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCC
Q 037627 715 ----------------DTCFDSLQPLSDCSYLIDLRLSGKIEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLT 778 (858)
Q Consensus 715 ----------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 778 (858)
...+ ....|..+.+|+.+.+..+...+....+..+++|+.+.+.. .++......|.++++|+
T Consensus 237 ~~~~~~~~~~~~ip~~v~~i-~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~ 314 (394)
T 4gt6_A 237 RYPSQREDPAFKIPNGVARI-ETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLK 314 (394)
T ss_dssp ECCTTCCCSEEECCTTEEEE-CTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCC
T ss_pred ccccccccceEEcCCcceEc-ccceeeecccccEEecccccceecCcccccccccccccCCC-cccccCceeecCCCCcC
Confidence 0000 12245667777777777665555555555567788777753 34445556777788888
Q ss_pred eeEeeccccCCceEEECCCCccccceeeecCCCCCCeEEE-ccCccccccceeeccc
Q 037627 779 ILDLGLKSYGGKKMICTTKGFHLLEILQLIDLNDLAQWQV-EDGAMPILRGLRVTNA 834 (858)
Q Consensus 779 ~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c 834 (858)
.+.|..+ ++... .....++.+|+.+.+-. +++.+.. .+..+++|+.+++.++
T Consensus 315 ~i~lp~~-v~~I~-~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 315 SIDIPEG-ITQIL-DDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp EEECCTT-CCEEC-TTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred EEEeCCc-ccEeh-HhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCc
Confidence 8877643 22100 01123445666666642 2443321 1334566777766654
No 203
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.93 E-value=2.5e-05 Score=86.40 Aligned_cols=147 Identities=17% Similarity=0.222 Sum_probs=80.2
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCc------c-eEEEEEeCCCCCHHHHHH
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKF------D-RCAWVSVSQDYDTKDLLL 248 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f------~-~~~wv~~~~~~~~~~~~~ 248 (858)
+.+|||+.+++++...+.... ..-+.|+|++|+|||++|+.+++ .....+ + .++.++++.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~--~l~~~~~p~~l~~~~~~~l~~~~--------- 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ--QIINNEVPEILRDKRVMTLDMGT--------- 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH--HHHSSCSCTTTSSCCEECC-------------
T ss_pred CCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH--HHHhCCCChhhcCCeEEEeeCCc---------
Confidence 469999999999999987643 34678999999999999999987 321111 1 122233220
Q ss_pred HHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChhhHHHHHhhCCCCCCCcEEEEEeCchhHHhh---
Q 037627 249 RIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKETWESLKRAFPDNKNGSRVIITTRIKEVAER--- 325 (858)
Q Consensus 249 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~~~~~--- 325 (858)
..... . ......+. ...-..++.+|++| ...+....+...+. ....++|.+|........
T Consensus 247 ----~~~g~-----~-e~~~~~~~---~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 247 ----KYRGE-----F-EDRLKKVM---DEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp ----------------CTTHHHHH---HHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred ----cccch-----H-HHHHHHHH---HHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhc
Confidence 00000 0 00112222 22223567899999 22222222333332 223566666654432111
Q ss_pred ---cCCCCceeecCCCChhHHHHHHHHHhc
Q 037627 326 ---SDENAYAHKLRFLRSDESWELFCEKAF 352 (858)
Q Consensus 326 ---~~~~~~~~~l~~L~~~e~~~l~~~~~~ 352 (858)
.......+.+.+.+.++..+++.....
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHHH
Confidence 111125689999999999999987653
No 204
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.93 E-value=5.1e-05 Score=83.79 Aligned_cols=180 Identities=11% Similarity=0.099 Sum_probs=103.9
Q ss_pred CceeeccccHHHHHHHHhcC-----------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHH
Q 037627 176 GNVVGFDDDVSKLLAKLLNK-----------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTK 244 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 244 (858)
..++|.+..++++.+.+... ....+-+.|+|++|+|||++|+.+++ ..... .+.++.+
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~--~~~~~---fv~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAF---FFLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH--HCSSE---EEEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH--HhCCC---EEEEEch------
Confidence 46899999999998877532 23456799999999999999999987 33322 2333321
Q ss_pred HHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh-------------hhHHHHHhhCC--CCCC
Q 037627 245 DLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK-------------ETWESLKRAFP--DNKN 309 (858)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-------------~~~~~l~~~l~--~~~~ 309 (858)
.+...+.. .....+...+.....+++.+|+||+++.. .....+...+. ....
T Consensus 273 ----~l~~~~~g---------~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~ 339 (489)
T 3hu3_A 273 ----EIMSKLAG---------ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (489)
T ss_dssp ----HHHTSCTT---------HHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTS
T ss_pred ----Hhhhhhcc---------hhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCC
Confidence 11111110 01122333444444567889999999421 11233333332 1233
Q ss_pred CcEEEEEeCchhH-HhhcC---CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCC-hHHHHHH
Q 037627 310 GSRVIITTRIKEV-AERSD---ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGL-PLAIVVL 382 (858)
Q Consensus 310 gs~ilvTtR~~~~-~~~~~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~-Plai~~~ 382 (858)
+..||.||..... ..... .....+.+...+.++-.+++..++.......+ ....++++.+.|. +-.+..+
T Consensus 340 ~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~---~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp CEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT---CCHHHHHHTCTTCCHHHHHHH
T ss_pred ceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch---hhHHHHHHHccCCcHHHHHHH
Confidence 4566667765522 21111 11246889999999999999887654332211 1235677777775 4444444
No 205
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.91 E-value=5.2e-05 Score=78.33 Aligned_cols=148 Identities=14% Similarity=0.059 Sum_probs=89.4
Q ss_pred eccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCcc-ccCCcceEEEEEeCCCCCHHHHHHHHHHhccccc
Q 037627 180 GFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNND-VKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINV 258 (858)
Q Consensus 180 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 258 (858)
|-++.++.+...+..+. .+...++|++|+||||+|+.+++... .........+++.+......+..+++...+....
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhcc
Confidence 34555667777776654 67899999999999999999986210 1111222344443321111122233333222110
Q ss_pred cchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCch-hHHhhcCCCCceeec
Q 037627 259 LTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRIK-EVAERSDENAYAHKL 335 (858)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~-~~~~~~~~~~~~~~l 335 (858)
..+++-++|+|+++.. +..+.+...+....+.+.+|++|.++ .+....... .+++
T Consensus 79 --------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR--~~~f 136 (305)
T 2gno_A 79 --------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR--VFRV 136 (305)
T ss_dssp --------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SEEE
T ss_pred --------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce--eEeC
Confidence 1245679999999865 35566776666555677777776554 333333333 7899
Q ss_pred CCCChhHHHHHHHHHh
Q 037627 336 RFLRSDESWELFCEKA 351 (858)
Q Consensus 336 ~~L~~~e~~~l~~~~~ 351 (858)
.++++++..+.+.+..
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998876
No 206
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.90 E-value=2.5e-05 Score=81.78 Aligned_cols=46 Identities=30% Similarity=0.411 Sum_probs=37.3
Q ss_pred CceeeccccHHHHHHHHhcC------------CCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 176 GNVVGFDDDVSKLLAKLLNK------------EPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
+.++|++..++.+...+... ......+.|+|++|+|||++|+.+++
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999988877541 12345788999999999999999997
No 207
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.88 E-value=8.1e-05 Score=75.38 Aligned_cols=180 Identities=13% Similarity=0.091 Sum_probs=94.9
Q ss_pred CceeeccccHHHHHHHH---hcC-------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHH
Q 037627 176 GNVVGFDDDVSKLLAKL---LNK-------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKD 245 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L---~~~-------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 245 (858)
++++|.+..++++.+.+ ... ....+-+.|+|++|+||||||+.++. ..... .+.++.+.-..
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~--~~~~~---~~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG--EAKVP---FFTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH--HHTCC---EEEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH--HcCCC---EEEEeHHHHHH---
Confidence 56889888777765543 221 11234588999999999999999997 33222 23333222110
Q ss_pred HHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh----------------hhHHHHHhhCCC--C
Q 037627 246 LLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK----------------ETWESLKRAFPD--N 307 (858)
Q Consensus 246 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~----------------~~~~~l~~~l~~--~ 307 (858)
.... .....+...+.......+.++++|+++.. .....+...+.. .
T Consensus 84 -------~~~~---------~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (257)
T 1lv7_A 84 -------MFVG---------VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 147 (257)
T ss_dssp -------SCCC---------CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS
T ss_pred -------Hhhh---------hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc
Confidence 0000 01122333333333456789999998421 112233322221 2
Q ss_pred CCCcEEEEEeCchh-HHhhc-C--CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCC-ChHHHHHH
Q 037627 308 KNGSRVIITTRIKE-VAERS-D--ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRG-LPLAIVVL 382 (858)
Q Consensus 308 ~~gs~ilvTtR~~~-~~~~~-~--~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G-~Plai~~~ 382 (858)
..+..||.||.... +.... . .....+.+...+.++-.+++..........++ .....++..+.| .+--+..+
T Consensus 148 ~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~---~~~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 148 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD---IDAAIIARGTPGFSGADLANL 224 (257)
T ss_dssp SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCCHHHHHHH
T ss_pred CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHcCCCCHHHHHHH
Confidence 23456666776543 21111 1 11246778888888888888776543221111 113456777777 66544443
No 208
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=9.2e-05 Score=79.51 Aligned_cols=176 Identities=15% Similarity=0.113 Sum_probs=95.0
Q ss_pred cCCceeeccccHHHHHHHHhc-----------CCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCC
Q 037627 174 IEGNVVGFDDDVSKLLAKLLN-----------KEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYD 242 (858)
Q Consensus 174 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 242 (858)
.-+++.|-+..+++|.+.+.- +-...+-+.++|++|+|||+||+++++ ..... .+.++.+.-.+
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~--~~~~~---~~~v~~~~l~~ 244 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN--STKAA---FIRVNGSEFVH 244 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH--HHTCE---EEEEEGGGTCC
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCC---eEEEecchhhc
Confidence 345788999988888776532 123456799999999999999999998 33333 23344332211
Q ss_pred HHHHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh------------h----hHHHHHhhCC-
Q 037627 243 TKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK------------E----TWESLKRAFP- 305 (858)
Q Consensus 243 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~------------~----~~~~l~~~l~- 305 (858)
... ......+...+...-...+++|++|+++.. . ...+++..+.
T Consensus 245 --------------~~~-----Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg 305 (428)
T 4b4t_K 245 --------------KYL-----GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDG 305 (428)
T ss_dssp --------------SSC-----SHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHH
T ss_pred --------------ccc-----chhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhC
Confidence 000 001122333333333467899999998621 0 1233333332
Q ss_pred -CCCCCcEEEEEeCchhHH-hhc-C--CCCceeecCCCChhH-HHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCCh
Q 037627 306 -DNKNGSRVIITTRIKEVA-ERS-D--ENAYAHKLRFLRSDE-SWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLP 376 (858)
Q Consensus 306 -~~~~gs~ilvTtR~~~~~-~~~-~--~~~~~~~l~~L~~~e-~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 376 (858)
....+..||.||...... ... . .....+.+..+++.+ -.++|..+......... -....|++.+.|+-
T Consensus 306 ~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~---~dl~~lA~~t~G~s 379 (428)
T 4b4t_K 306 FDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPE---ADLDSLIIRNDSLS 379 (428)
T ss_dssp SCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTT---CCHHHHHHHTTTCC
T ss_pred CCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcc---cCHHHHHHHCCCCC
Confidence 223455667777654321 111 1 111457776665544 44566555543322111 11356777787753
No 209
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.86 E-value=9e-06 Score=73.97 Aligned_cols=46 Identities=17% Similarity=0.194 Sum_probs=34.5
Q ss_pred ceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcC
Q 037627 177 NVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 177 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
.++|++..++++.+.+........-|.|+|++|+|||++|+.+++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 5789999999888887543222345889999999999999999973
No 210
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.85 E-value=2.6e-05 Score=93.32 Aligned_cols=156 Identities=16% Similarity=0.168 Sum_probs=82.8
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCcccc---CC--cceEEEEEeCCCCCHHHHHHH
Q 037627 175 EGNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVK---NK--FDRCAWVSVSQDYDTKDLLLR 249 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~---~~--f~~~~wv~~~~~~~~~~~~~~ 249 (858)
-+.+|||+.+++++...+.... .+.+.|+|++|+|||++|+.+++..... .. -..+++++++.-..
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------- 239 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------- 239 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------
T ss_pred CcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-------
Confidence 3569999999999999987643 3457899999999999999998731100 00 11234443322110
Q ss_pred HHHhccccccchhhhhccHHHHHHHHHHHhc-CceEEEEEEcCCChh-------hH---HHHHhhCCCCCCCcEEEEEeC
Q 037627 250 IIRSFKINVLTRELEEMREEDLERYLHNCLQ-GKSYLVVVDDAWQKE-------TW---ESLKRAFPDNKNGSRVIITTR 318 (858)
Q Consensus 250 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDd~~~~~-------~~---~~l~~~l~~~~~gs~ilvTtR 318 (858)
+... .......+...+...-. +++.+|++|+++... .+ ..+...+.. .+..+|.+|.
T Consensus 240 -----g~~~-----~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~ 307 (854)
T 1qvr_A 240 -----GAKY-----RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATT 307 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEEC
T ss_pred -----cCcc-----chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecC
Confidence 0000 00001122222222222 468899999997542 01 122222222 2344665555
Q ss_pred chhH-----HhhcCCCCceeecCCCChhHHHHHHHHHh
Q 037627 319 IKEV-----AERSDENAYAHKLRFLRSDESWELFCEKA 351 (858)
Q Consensus 319 ~~~~-----~~~~~~~~~~~~l~~L~~~e~~~l~~~~~ 351 (858)
.... ..........+.+.+.+.++..+++....
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 4432 11111222568999999999999997543
No 211
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.84 E-value=8e-05 Score=79.99 Aligned_cols=176 Identities=13% Similarity=0.109 Sum_probs=98.4
Q ss_pred cCCceeeccccHHHHHHHHhc----C-------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCC
Q 037627 174 IEGNVVGFDDDVSKLLAKLLN----K-------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYD 242 (858)
Q Consensus 174 ~~~~~vGr~~~~~~l~~~L~~----~-------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 242 (858)
.-+++.|-++.+++|.+.+.. + -...+-|.++|++|+|||.||++++. ..... .+.++.+.-.+
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~---f~~v~~s~l~~ 253 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNAT---FLKLAAPQLVQ 253 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCE---EEEEEGGGGCS
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCC---EEEEehhhhhh
Confidence 345788999988888776432 1 23467899999999999999999998 33333 23333322111
Q ss_pred HHHHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh-------h---------hHHHHHhhCCC
Q 037627 243 TKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK-------E---------TWESLKRAFPD 306 (858)
Q Consensus 243 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-------~---------~~~~l~~~l~~ 306 (858)
... ......+...+...-...+++|++|+++.. . ....++..+..
T Consensus 254 --------------~~v-----Gese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg 314 (434)
T 4b4t_M 254 --------------MYI-----GEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDG 314 (434)
T ss_dssp --------------SCS-----SHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTT
T ss_pred --------------ccc-----chHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhc
Confidence 000 001112222222222356899999998632 0 12234444432
Q ss_pred C--CCCcEEEEEeCchhHHh-hcC---CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCCh
Q 037627 307 N--KNGSRVIITTRIKEVAE-RSD---ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLP 376 (858)
Q Consensus 307 ~--~~gs~ilvTtR~~~~~~-~~~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 376 (858)
. ..+..||.||..+.... ... .....+.++.-+.++-.++|..+......... . ....|++.+.|+-
T Consensus 315 ~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d-v--dl~~lA~~t~G~s 387 (434)
T 4b4t_M 315 FSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDD-I--NWQELARSTDEFN 387 (434)
T ss_dssp SCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSC-C--CHHHHHHHCSSCC
T ss_pred cCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCc-C--CHHHHHHhCCCCC
Confidence 2 23455666776553322 211 11156888888888888888766544322111 0 1356788887753
No 212
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.83 E-value=0.00022 Score=76.42 Aligned_cols=174 Identities=15% Similarity=0.106 Sum_probs=99.1
Q ss_pred CceeeccccHHHHHHHHhc-----------CCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHH
Q 037627 176 GNVVGFDDDVSKLLAKLLN-----------KEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTK 244 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 244 (858)
+++.|-++.+++|.+.+.- +-...+-|.++|++|+|||.||+++++ .....| +.++.+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f---i~vs~s~L~s-- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF---IRVIGSELVQ-- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGGCC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe---EEEEhHHhhc--
Confidence 4678888888888776421 123467899999999999999999998 343332 3333322111
Q ss_pred HHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh----------------hHHHHHhhCCC--
Q 037627 245 DLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE----------------TWESLKRAFPD-- 306 (858)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~----------------~~~~l~~~l~~-- 306 (858)
... ......+...+...-...+++|++|+++... ....++..+..
T Consensus 282 ------------k~v-----Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 344 (467)
T 4b4t_H 282 ------------KYV-----GEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD 344 (467)
T ss_dssp ------------CSS-----SHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC
T ss_pred ------------ccC-----CHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC
Confidence 000 0011223333333335678999999997430 11223333322
Q ss_pred CCCCcEEEEEeCchhHH-hh---cCCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCCh
Q 037627 307 NKNGSRVIITTRIKEVA-ER---SDENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLP 376 (858)
Q Consensus 307 ~~~gs~ilvTtR~~~~~-~~---~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 376 (858)
...+..||.||...... .. .+.....+.++.-+.++-.++|+.+......... . ....|++.|.|.-
T Consensus 345 ~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~d-v--dl~~LA~~T~GfS 415 (467)
T 4b4t_H 345 PRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERG-I--RWELISRLCPNST 415 (467)
T ss_dssp CTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSS-C--CHHHHHHHCCSCC
T ss_pred CCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCC-C--CHHHHHHHCCCCC
Confidence 23344556677544321 11 1122267888888888888999877654332211 1 1356788888764
No 213
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00017 Score=76.45 Aligned_cols=174 Identities=13% Similarity=0.106 Sum_probs=97.4
Q ss_pred CceeeccccHHHHHHHHhc----C-------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHH
Q 037627 176 GNVVGFDDDVSKLLAKLLN----K-------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTK 244 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~----~-------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 244 (858)
+++.|-++.+++|.+.+.- + -...+-|.++|++|+|||.||++++. .....| +.++.+.-.+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f---i~v~~s~l~s-- 254 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTSATF---LRIVGSELIQ-- 254 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCEE---EEEESGGGCC--
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhCCCE---EEEEHHHhhh--
Confidence 5677888888888776532 1 23457899999999999999999998 333332 2333322110
Q ss_pred HHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh----------------hhHHHHHhhCC--C
Q 037627 245 DLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK----------------ETWESLKRAFP--D 306 (858)
Q Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~----------------~~~~~l~~~l~--~ 306 (858)
... ......+...+...-...+++|++|+++.. ..+..++..+. .
T Consensus 255 ------------k~v-----Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 255 ------------KYL-----GDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp ------------SSS-----SHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred ------------ccC-----chHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 000 001122222333333467899999998732 01223333322 2
Q ss_pred CCCCcEEEEEeCchhHHh-hcCC---CCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCCh
Q 037627 307 NKNGSRVIITTRIKEVAE-RSDE---NAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLP 376 (858)
Q Consensus 307 ~~~gs~ilvTtR~~~~~~-~~~~---~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 376 (858)
...+..||.||...+... .... ....+.++.-+.++-.++|..+......... -....|++.+.|+-
T Consensus 318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~d---vdl~~LA~~T~GfS 388 (437)
T 4b4t_I 318 DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSED---VNLETLVTTKDDLS 388 (437)
T ss_dssp CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSC---CCHHHHHHHCCSCC
T ss_pred CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCc---CCHHHHHHhCCCCC
Confidence 233555666775554322 2211 1146778888888888888877654332211 01356777887754
No 214
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.73 E-value=0.00011 Score=74.86 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=34.9
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcC
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
+.++|.+..+.++.+.+.........+.|+|++|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 45899999999888777543223457889999999999999999974
No 215
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.73 E-value=0.00017 Score=79.63 Aligned_cols=96 Identities=15% Similarity=0.047 Sum_probs=58.5
Q ss_pred EEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEe---------Cc----h-hHHhhcCCCCceeecCCCChhHHHHHH
Q 037627 284 YLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITT---------RI----K-EVAERSDENAYAHKLRFLRSDESWELF 347 (858)
Q Consensus 284 ~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTt---------R~----~-~~~~~~~~~~~~~~l~~L~~~e~~~l~ 347 (858)
-++++|+++.. +.+..+...+...... .+|+.| .+ + .+..........+.+.+++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 49999999855 4677777777655444 344344 11 1 111111112245799999999999999
Q ss_pred HHHhcCCCCCChhHHHHHHHHHHHc-CCChHHHHHH
Q 037627 348 CEKAFRKSNGSEGLEKLGREMVEKC-RGLPLAIVVL 382 (858)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~I~~~~-~G~Plai~~~ 382 (858)
...+...... ..++....|++.+ +|.|..+..+
T Consensus 376 ~~~~~~~~~~--~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 376 KIRAQTEGIN--ISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHTCC--BCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHhCCC--CCHHHHHHHHHHccCCCHHHHHHH
Confidence 8876422221 1145667788888 7888654443
No 216
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.72 E-value=0.00036 Score=76.31 Aligned_cols=174 Identities=14% Similarity=0.097 Sum_probs=98.1
Q ss_pred CceeeccccHHHHHHHHh---cC-------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHH
Q 037627 176 GNVVGFDDDVSKLLAKLL---NK-------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKD 245 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~---~~-------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 245 (858)
.+++|.++.++++.+.+. .+ ....+-+.|+|++|+|||+||+.++. ..... .+.++.+.....
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~--~~~~~---f~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG--EANVP---FFHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH--HHTCC---EEEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HcCCC---eeeCCHHHHHHH--
Confidence 468898887777665542 21 11234588999999999999999997 33322 233443322110
Q ss_pred HHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh----------------hhHHHHHhhCCC--C
Q 037627 246 LLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK----------------ETWESLKRAFPD--N 307 (858)
Q Consensus 246 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~----------------~~~~~l~~~l~~--~ 307 (858)
+.. .....+...+.....+.+.+|+||+++.. ....++...+.. .
T Consensus 89 --------~~g---------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~ 151 (476)
T 2ce7_A 89 --------FVG---------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS 151 (476)
T ss_dssp --------CTT---------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG
T ss_pred --------Hhc---------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC
Confidence 000 01122334444455577899999999642 122333333221 1
Q ss_pred CCCcEEEEEeCchhHHh-h-cC--CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCCh
Q 037627 308 KNGSRVIITTRIKEVAE-R-SD--ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLP 376 (858)
Q Consensus 308 ~~gs~ilvTtR~~~~~~-~-~~--~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 376 (858)
..+..||.||....... . .. .....+.+...+.++-.+++..++.......+ . ....|++.+.|+.
T Consensus 152 ~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~-v--~l~~la~~t~G~s 221 (476)
T 2ce7_A 152 KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAED-V--NLEIIAKRTPGFV 221 (476)
T ss_dssp GGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT-C--CHHHHHHTCTTCC
T ss_pred CCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcch-h--hHHHHHHhcCCCc
Confidence 23556777776654322 1 11 11147788888888888888777654322111 1 1355888888887
No 217
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.67 E-value=0.00039 Score=71.95 Aligned_cols=46 Identities=24% Similarity=0.382 Sum_probs=37.9
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
+.++|+...+.++.+.+.........|.|+|++|+|||++|+.+++
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHH
Confidence 4589999999999888765433445788999999999999999987
No 218
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.65 E-value=0.00014 Score=75.96 Aligned_cols=62 Identities=19% Similarity=0.257 Sum_probs=43.1
Q ss_pred CceeeccccHHHHHHHHhcC-------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCC
Q 037627 176 GNVVGFDDDVSKLLAKLLNK-------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQ 239 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 239 (858)
..++|.+..++.+...+... ......+.|+|++|+|||++|+.++. .....-...+.++++.
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~--~~~~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIRIDMTE 85 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH--HHHSCGGGEEEEEGGG
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH--HHcCCCcceEEeeccc
Confidence 35789888888888777543 11235899999999999999999997 3322222345555543
No 219
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.63 E-value=3.5e-05 Score=73.26 Aligned_cols=117 Identities=21% Similarity=0.217 Sum_probs=60.0
Q ss_pred cccHHHHHHHHhcCC-CCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccc
Q 037627 182 DDDVSKLLAKLLNKE-PRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLT 260 (858)
Q Consensus 182 ~~~~~~l~~~L~~~~-~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 260 (858)
...++.+.+++..-. .....+.|+|++|+||||||+.++........+ .+++++ ..++...+.........
T Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~~~~- 91 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDEGKD- 91 (180)
T ss_dssp HHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcCchH-
Confidence 344444444443321 235689999999999999999998732112222 234443 33444444333221111
Q ss_pred hhhhhccHHHHHHHHHHHhcCceEEEEEEcCCC--hhhHH--HHHhhCCCC-CCCcEEEEEeCc
Q 037627 261 RELEEMREEDLERYLHNCLQGKSYLVVVDDAWQ--KETWE--SLKRAFPDN-KNGSRVIITTRI 319 (858)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~--~~~~~--~l~~~l~~~-~~gs~ilvTtR~ 319 (858)
...... + .+.-+|||||++. .+.|. .+...+... ..|..+|+||..
T Consensus 92 --------~~~~~~----~-~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 92 --------TKFLKT----V-LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp --------SHHHHH----H-HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred --------HHHHHH----h-cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 011111 1 2456899999973 23332 222222211 235678888863
No 220
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.62 E-value=0.00026 Score=83.76 Aligned_cols=156 Identities=13% Similarity=0.139 Sum_probs=86.9
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCcccc---C-CcceEEE-EEeCCCCCHHHHHHHH
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVK---N-KFDRCAW-VSVSQDYDTKDLLLRI 250 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~---~-~f~~~~w-v~~~~~~~~~~~~~~i 250 (858)
+.++||+.+++++.+.|.... ...+.|+|++|+|||++|+.++...... . .....+| ++.+...
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~--------- 254 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL--------- 254 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC------------
T ss_pred CCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh---------
Confidence 468999999999999987653 4567899999999999999998731100 0 0122222 2211100
Q ss_pred HHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh--------hh--HHHHHhhCCCCCCCcEEEEEeCch
Q 037627 251 IRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK--------ET--WESLKRAFPDNKNGSRVIITTRIK 320 (858)
Q Consensus 251 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--------~~--~~~l~~~l~~~~~gs~ilvTtR~~ 320 (858)
..... ...-.+.+...+...-..++.+|++|+++.. .. ...+...+... .+.++|.+|...
T Consensus 255 ----~~~~~----~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~-~~~~~I~at~~~ 325 (758)
T 1r6b_X 255 ----AGTKY----RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQ 325 (758)
T ss_dssp ----CCCCC----SSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-CCCEEEEEECHH
T ss_pred ----ccccc----cchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC-CCeEEEEEeCch
Confidence 00000 0001122223333333345789999999854 12 22222222222 345667766654
Q ss_pred hHHhhcC------CCCceeecCCCChhHHHHHHHHHh
Q 037627 321 EVAERSD------ENAYAHKLRFLRSDESWELFCEKA 351 (858)
Q Consensus 321 ~~~~~~~------~~~~~~~l~~L~~~e~~~l~~~~~ 351 (858)
....... .....+.+.+.+.++..+++....
T Consensus 326 ~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 4322111 111468899999999998887654
No 221
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.61 E-value=0.00065 Score=73.18 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=28.6
Q ss_pred CCCCCCccEEEecccCCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEee
Q 037627 724 LSDCSYLIDLRLSGKIEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLG 783 (858)
Q Consensus 724 l~~l~~L~~L~l~~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 783 (858)
+..+.+|+.+.+..++..++...+..+++|+.+.+.++.++.....+|.++++|+.+.|.
T Consensus 259 F~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 259 LQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred cceeehhccccccccceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 344444555555444444444444334555555555444443344445555555555554
No 222
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.57 E-value=0.00037 Score=82.39 Aligned_cols=151 Identities=15% Similarity=0.167 Sum_probs=81.2
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccc---cCCcceEEEEEeCCCCCHHHHHHHHHH
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDV---KNKFDRCAWVSVSQDYDTKDLLLRIIR 252 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~ 252 (858)
+.+|||+.+++++...+.... ..-+.++|++|+|||++|+.+++.... .......-++.++-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~------------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM------------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------------
Confidence 469999999999999997643 345789999999999999999873100 00001111121111
Q ss_pred hccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChhhHHHHHhhCCCCCCCcEEEEEeCchhHHhh------c
Q 037627 253 SFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKETWESLKRAFPDNKNGSRVIITTRIKEVAER------S 326 (858)
Q Consensus 253 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~~~~~------~ 326 (858)
+..... . -. ..+...+......++.+|++| ...+....+...+. ....++|.||........ .
T Consensus 245 --g~~~~G-~-~e---~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al 313 (758)
T 3pxi_A 245 --GTKYRG-E-FE---DRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAAL 313 (758)
T ss_dssp ------------C---TTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHH
T ss_pred --cccccc-h-HH---HHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHH
Confidence 000000 0 00 112222333334678899999 22222222333332 224567766655442111 1
Q ss_pred CCCCceeecCCCChhHHHHHHHHHhc
Q 037627 327 DENAYAHKLRFLRSDESWELFCEKAF 352 (858)
Q Consensus 327 ~~~~~~~~l~~L~~~e~~~l~~~~~~ 352 (858)
......+.+.+.+.++..+++.....
T Consensus 314 ~rRf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 314 ERRFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp HHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred HhhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 11115689999999999999986543
No 223
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.47 E-value=4.2e-05 Score=78.09 Aligned_cols=154 Identities=13% Similarity=0.039 Sum_probs=81.5
Q ss_pred CceeeccccHHHHHHHHhc----------CCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHH
Q 037627 176 GNVVGFDDDVSKLLAKLLN----------KEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKD 245 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 245 (858)
..++|.+..++.+.+.+.. +....+-+.|+|++|+|||+||+.++. .....| +.++.+.-.+
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~--~~~~~~---~~v~~~~~~~--- 82 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG--EAHVPF---FSMGGSSFIE--- 82 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH--HHTCCC---CCCCSCTTTT---
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH--HhCCCE---EEechHHHHH---
Confidence 5689999888888776541 111233478999999999999999997 333222 1111111100
Q ss_pred HHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh-----------------hHHHHHhhCCCC-
Q 037627 246 LLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE-----------------TWESLKRAFPDN- 307 (858)
Q Consensus 246 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-----------------~~~~l~~~l~~~- 307 (858)
....... ..... .+.......+.+|++|+++... ....+...+...
T Consensus 83 -------~~~~~~~------~~~~~---~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (268)
T 2r62_A 83 -------MFVGLGA------SRVRD---LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG 146 (268)
T ss_dssp -------SCSSSCS------SSSST---THHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS
T ss_pred -------hhcchHH------HHHHH---HHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc
Confidence 0000000 00011 1122223456899999996431 122233333221
Q ss_pred --CCCcEEEEEeCchhHH-hh-cC--CCCceeecCCCChhHHHHHHHHHhcC
Q 037627 308 --KNGSRVIITTRIKEVA-ER-SD--ENAYAHKLRFLRSDESWELFCEKAFR 353 (858)
Q Consensus 308 --~~gs~ilvTtR~~~~~-~~-~~--~~~~~~~l~~L~~~e~~~l~~~~~~~ 353 (858)
.....||.||...... .. .. .....+.+...+.++-.+++...+..
T Consensus 147 ~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~ 198 (268)
T 2r62_A 147 SENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKG 198 (268)
T ss_dssp CSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSS
T ss_pred cCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhc
Confidence 1224566666655321 11 11 11156788888999988888776643
No 224
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.45 E-value=0.00042 Score=80.29 Aligned_cols=176 Identities=11% Similarity=0.105 Sum_probs=101.0
Q ss_pred CCceeeccccHHHHHHHHh----cC-------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCH
Q 037627 175 EGNVVGFDDDVSKLLAKLL----NK-------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDT 243 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~----~~-------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 243 (858)
-+++.|-++.+++|.+.+. .+ -...+-|.++|++|+|||+||+.+++ ....+ .+.++.+
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~--elg~~---~~~v~~~----- 272 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAF---FFLINGP----- 272 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT--TTTCE---EEEEEHH-----
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCe---EEEEEhH-----
Confidence 3567889998888877653 21 12457899999999999999999998 33333 2334322
Q ss_pred HHHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh---------h----hHHHHHhhCCC--CC
Q 037627 244 KDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK---------E----TWESLKRAFPD--NK 308 (858)
Q Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~---------~----~~~~l~~~l~~--~~ 308 (858)
++..... ......+...+.......+.+|+||+++.. + ...++...+.. ..
T Consensus 273 -----~l~sk~~---------gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~ 338 (806)
T 3cf2_A 273 -----EIMSKLA---------GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR 338 (806)
T ss_dssp -----HHHSSCT---------THHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGG
T ss_pred -----Hhhcccc---------hHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccccc
Confidence 1111110 111233444455555677999999999742 1 12233322221 12
Q ss_pred CCcEEEEEeCchh-HHhhcC---CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCChH
Q 037627 309 NGSRVIITTRIKE-VAERSD---ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLPL 377 (858)
Q Consensus 309 ~gs~ilvTtR~~~-~~~~~~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl 377 (858)
.+..||.||...+ +..... .....+.+..-+.++-.+++..+......... -....|++++.|+--
T Consensus 339 ~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~d---vdl~~lA~~T~Gfsg 408 (806)
T 3cf2_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHVG 408 (806)
T ss_dssp GCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTT---CCHHHHHHHCCSCCH
T ss_pred CCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcc---cCHHHHHHhcCCCCH
Confidence 2344555665443 222222 12257888888888888888776543222111 124678888888753
No 225
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.42 E-value=0.0017 Score=70.14 Aligned_cols=108 Identities=12% Similarity=0.142 Sum_probs=71.8
Q ss_pred hhhhcCCCCCeEEeeccCCccccCCCCCCCCCCccEEEecccCCCCChhhhhccCCccEEEEecccCCCCCccccCCCCC
Q 037627 697 KSIAYLKNLQLLSIRLSDDTCFDSLQPLSDCSYLIDLRLSGKIEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPN 776 (858)
Q Consensus 697 ~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 776 (858)
.++.++..|+.+.+..+- ..+ ....+..+++|+.+.+...+..++...+..+.+|+.++|..+ ++.....+|.++.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~-~~I-~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSV-VSI-GTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTC-CEE-CTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEeccccc-cee-cCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 567778888888875432 222 334577788888888887777777777776888998888764 55555677888889
Q ss_pred CCeeEeeccccCCceEEECCCCccccceeeecC
Q 037627 777 LTILDLGLKSYGGKKMICTTKGFHLLEILQLID 809 (858)
Q Consensus 777 L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~ 809 (858)
|+.+.|..+ ++... ......+++|+.+.+.+
T Consensus 336 L~~i~ip~s-v~~I~-~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 336 LERIAIPSS-VTKIP-ESAFSNCTALNNIEYSG 366 (394)
T ss_dssp CCEEEECTT-CCBCC-GGGGTTCTTCCEEEESS
T ss_pred CCEEEECcc-cCEEh-HhHhhCCCCCCEEEECC
Confidence 998888643 32110 01123455666666654
No 226
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.39 E-value=0.00022 Score=69.19 Aligned_cols=60 Identities=20% Similarity=0.112 Sum_probs=38.0
Q ss_pred Cceeecc----ccHHHHHHHHhcCCCC--cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEe
Q 037627 176 GNVVGFD----DDVSKLLAKLLNKEPR--RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSV 237 (858)
Q Consensus 176 ~~~vGr~----~~~~~l~~~L~~~~~~--~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 237 (858)
+.|++.+ ..++.+.+++...... .+.+.|+|++|+|||+||+.+++ ........++|+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYV 90 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEH
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEh
Confidence 3455543 2344455555443221 26899999999999999999997 33333345666654
No 227
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.38 E-value=0.00015 Score=85.61 Aligned_cols=151 Identities=16% Similarity=0.182 Sum_probs=85.0
Q ss_pred CceeeccccHHHHHHHHhcCC-------CCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHH
Q 037627 176 GNVVGFDDDVSKLLAKLLNKE-------PRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLL 248 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 248 (858)
..++|.+..++.+...+.... .....+.++|++|+|||++|+.+++. ....-...+.++++.......
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~~--- 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKHS--- 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSCC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhcccccc---
Confidence 568999999988888876421 12347999999999999999999973 222222345555543211000
Q ss_pred HHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh--hhHHHHHhhCCC-----------CCCCcEEEE
Q 037627 249 RIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK--ETWESLKRAFPD-----------NKNGSRVII 315 (858)
Q Consensus 249 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~-----------~~~gs~ilv 315 (858)
. ....+...++. ...-+|+||+++.. +....+...+.. ...+.+||+
T Consensus 566 -------~----------~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 625 (758)
T 3pxi_A 566 -------T----------SGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIM 625 (758)
T ss_dssp -------C----------C---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEE
T ss_pred -------c----------ccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEE
Confidence 0 00111112221 23458999999754 334444433321 123567888
Q ss_pred EeCchh-----H----Hh-----hcCCCCceeecCCCChhHHHHHHHHHh
Q 037627 316 TTRIKE-----V----AE-----RSDENAYAHKLRFLRSDESWELFCEKA 351 (858)
Q Consensus 316 TtR~~~-----~----~~-----~~~~~~~~~~l~~L~~~e~~~l~~~~~ 351 (858)
||.... + .. ....-...+.+.+++.++..+++....
T Consensus 626 ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 626 TSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp EESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred eCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 887310 0 00 011111578999999999888886654
No 228
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.36 E-value=9.6e-05 Score=68.58 Aligned_cols=34 Identities=15% Similarity=0.144 Sum_probs=14.4
Q ss_pred CccEEEEeccc-CCCCCccccCCCCCCCeeEeecc
Q 037627 752 NLECLSLKKSH-LKEDPMPKLEKLPNLTILDLGLK 785 (858)
Q Consensus 752 ~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n 785 (858)
+|++|+|++|. ++......+..+++|+.|+|+++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 34444444442 33333333444444444444433
No 229
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.30 E-value=0.00013 Score=66.57 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=27.9
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCC
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQ 239 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 239 (858)
....++|+|+.|+|||||++.++...... .+ .+++++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHH
Confidence 35689999999999999999998732211 11 256665543
No 230
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.27 E-value=6.1e-05 Score=71.83 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=23.6
Q ss_pred cccCCcccceEeccCC-ccc-----ccCcccccCCCCcEEeccccc
Q 037627 585 EMVKLVNLKYLRLTNA-HID-----VIPSCIAKLQRLQTLDISGNM 624 (858)
Q Consensus 585 ~~~~l~~L~~L~L~~n-~i~-----~lp~~l~~l~~L~~L~L~~n~ 624 (858)
.+...++|++|+|++| .++ .+...+...++|++|+|++|.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~ 76 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR 76 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC
Confidence 3455666666666666 554 234445555666666666663
No 231
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.24 E-value=0.0028 Score=66.60 Aligned_cols=151 Identities=20% Similarity=0.225 Sum_probs=83.9
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
+.++|++..++.+...+..+. .+.++|++|+|||+||+.+++ .....| ..+.........++. ....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~----~vll~G~pGtGKT~la~~la~--~~~~~~---~~i~~~~~~~~~~l~----g~~~ 93 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG----HILLEGVPGLAKTLSVNTLAK--TMDLDF---HRIQFTPDLLPSDLI----GTMI 93 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC----CEEEESCCCHHHHHHHHHHHH--HTTCCE---EEEECCTTCCHHHHH----EEEE
T ss_pred cceeCcHHHHHHHHHHHHcCC----eEEEECCCCCcHHHHHHHHHH--HhCCCe---EEEecCCCCChhhcC----Ccee
Confidence 458899999998888886643 688999999999999999987 333332 233443333333221 1110
Q ss_pred ccccchhhhhccHHHHHHHHHHHhc-C--ceEEEEEEcCCCh--hhHHHHHhhCCC-----------CCCCcEEEEEeCc
Q 037627 256 INVLTRELEEMREEDLERYLHNCLQ-G--KSYLVVVDDAWQK--ETWESLKRAFPD-----------NKNGSRVIITTRI 319 (858)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~l~-~--~~~LlvlDd~~~~--~~~~~l~~~l~~-----------~~~gs~ilvTtR~ 319 (858)
.... .... .+. + ...++++|+++.. .....+...+.. ......|+.|+..
T Consensus 94 ~~~~---~~~~-----------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np 159 (331)
T 2r44_A 94 YNQH---KGNF-----------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNP 159 (331)
T ss_dssp EETT---TTEE-----------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECT
T ss_pred ecCC---CCce-----------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCC
Confidence 0000 0000 000 1 1258999999754 233333332211 1234455555552
Q ss_pred hh------HHhh-cCCCCceeecCCCChhHHHHHHHHHhcC
Q 037627 320 KE------VAER-SDENAYAHKLRFLRSDESWELFCEKAFR 353 (858)
Q Consensus 320 ~~------~~~~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~ 353 (858)
.. +... .......+.+.+.+.++-.+++......
T Consensus 160 ~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 160 VEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp TCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred CcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 21 1111 1111135889999999999999887654
No 232
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.22 E-value=0.00095 Score=65.50 Aligned_cols=91 Identities=21% Similarity=0.194 Sum_probs=54.0
Q ss_pred CCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcccccc-------c-hhhhhccH
Q 037627 197 PRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVL-------T-RELEEMRE 268 (858)
Q Consensus 197 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------~-~~~~~~~~ 268 (858)
+...++.|+|++|+||||||..++. . .-..++|++.....+...+. ++....+.... . ........
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTEGGFSPERLV-QMAETRGLNPEEALSRFILFTPSDFKEQ 91 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESSCCCCHHHHH-HHHHTTTCCHHHHHHHEEEECCTTTSHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECCCCCCHHHHH-HHHHhcCCChHHHhhcEEEEecCCHHHH
Confidence 3456999999999999999999986 1 12468888877655555443 34333322100 0 00011112
Q ss_pred HHHHHHHHHHhcCceEEEEEEcCCC
Q 037627 269 EDLERYLHNCLQGKSYLVVVDDAWQ 293 (858)
Q Consensus 269 ~~~~~~l~~~l~~~~~LlvlDd~~~ 293 (858)
......++..+..+.-+||+|.+..
T Consensus 92 ~~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 92 RRVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHHhhcCCCEEEEcCcHH
Confidence 2344445555444577999999753
No 233
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.16 E-value=0.00041 Score=69.57 Aligned_cols=76 Identities=21% Similarity=0.173 Sum_probs=55.6
Q ss_pred eeeeccCCccccccccCCC-CCccccccCCcccceEeccCCcccccCcccccCC--CCcEEeccccccccccch------
Q 037627 561 RVLNFEGVVSNVLCSVGGC-YNLPEEMVKLVNLKYLRLTNAHIDVIPSCIAKLQ--RLQTLDISGNMAFMELPR------ 631 (858)
Q Consensus 561 r~L~L~~~~~~~~~~~~~~-~~lp~~~~~l~~L~~L~L~~n~i~~lp~~l~~l~--~L~~L~L~~n~~~~~lp~------ 631 (858)
+.|+|++|. +.. ..+|..+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|.+.+.+|.
T Consensus 173 ~~L~Ls~N~-------l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 173 LSLNLSNNR-------LYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp CEEECTTSC-------CCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred CEEECCCCC-------CCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 778999998 551 13446677899999999999999877 3455555 999999999977666652
Q ss_pred -hhhcccccccccc
Q 037627 632 -EICELKELRHLIG 644 (858)
Q Consensus 632 -~~~~l~~L~~L~~ 644 (858)
.+..+++|+.|+.
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 2556677766643
No 234
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.16 E-value=0.0052 Score=62.33 Aligned_cols=152 Identities=11% Similarity=0.089 Sum_probs=79.4
Q ss_pred CceeeccccHHHHHHHHhcC------------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCH
Q 037627 176 GNVVGFDDDVSKLLAKLLNK------------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDT 243 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 243 (858)
.++.|-++.++++.+.+..+ ..... +.|+|++|+||||||+.++.. ... ..+++....-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~--~~~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE--SGL---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH--TTC---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH--cCC---CEEEEEcHHHHhh
Confidence 45677777777776644210 11223 999999999999999999972 222 2344443221110
Q ss_pred HHHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh-------------hHHHHHhhCCCC--C
Q 037627 244 KDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE-------------TWESLKRAFPDN--K 308 (858)
Q Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-------------~~~~l~~~l~~~--~ 308 (858)
.. .. ....+...+...-...+.++++|+++... ....+...+... .
T Consensus 84 --------------~~----~~-~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~ 144 (274)
T 2x8a_A 84 --------------YV----GE-SERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEAR 144 (274)
T ss_dssp --------------TT----HH-HHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCST
T ss_pred --------------hh----hH-HHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccccc
Confidence 00 00 00111111222123457899999997421 122333333221 2
Q ss_pred CCcEEEEEeCchhHHhhc----CCCCceeecCCCChhHHHHHHHHHhc
Q 037627 309 NGSRVIITTRIKEVAERS----DENAYAHKLRFLRSDESWELFCEKAF 352 (858)
Q Consensus 309 ~gs~ilvTtR~~~~~~~~----~~~~~~~~l~~L~~~e~~~l~~~~~~ 352 (858)
...-++.+|..+.+.... +.....+.++.-+.++-.+++.....
T Consensus 145 ~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 145 QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp TCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 234455566655433211 12225678888888888888887653
No 235
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.11 E-value=0.0093 Score=63.96 Aligned_cols=106 Identities=14% Similarity=0.047 Sum_probs=59.3
Q ss_pred CCCCCCCccEEEecccCCCCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccCCceEEECCCCcccc
Q 037627 723 PLSDCSYLIDLRLSGKIEKLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYGGKKMICTTKGFHLL 802 (858)
Q Consensus 723 ~l~~l~~L~~L~l~~~~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L 802 (858)
.+..+.+|+.+.+..++..+....+..+.+|+.+.+..+ +.......|.++++|+.+.+.++.++... ......+.+|
T Consensus 235 ~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~-~~aF~~c~~L 312 (379)
T 4h09_A 235 AFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLE-PRVFMDCVKL 312 (379)
T ss_dssp TTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEEC-TTTTTTCTTC
T ss_pred cccCCccceEEEcCCCccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceeh-hhhhcCCCCC
Confidence 355666777777776666555555555677777777544 44444566777888888888765553210 0112234566
Q ss_pred ceeeecCCCCCCeEEEc-cCccccccceeec
Q 037627 803 EILQLIDLNDLAQWQVE-DGAMPILRGLRVT 832 (858)
Q Consensus 803 ~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~ 832 (858)
+.+.+.+ +++.+... +..+++|+.+.+.
T Consensus 313 ~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 313 SSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred CEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 6666642 34433221 2234556655553
No 236
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.10 E-value=0.0031 Score=64.80 Aligned_cols=24 Identities=17% Similarity=0.465 Sum_probs=21.8
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.++.+.++|++|+|||+||+.+++
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999999999998
No 237
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.09 E-value=0.0021 Score=64.72 Aligned_cols=174 Identities=14% Similarity=0.093 Sum_probs=86.8
Q ss_pred CceeeccccHHHHHHHHh---cC------C-CCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHH
Q 037627 176 GNVVGFDDDVSKLLAKLL---NK------E-PRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKD 245 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~---~~------~-~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 245 (858)
++++|.+....++.+... .. + .-.+-+.|+|++|+||||||+.++.. ... ..+.++.. .
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~--~~~---~~i~~~~~------~ 84 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--ARV---PFITASGS------D 84 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH--TTC---CEEEEEHH------H
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCC---CEEEeeHH------H
Confidence 467887766655544322 11 0 01123899999999999999999973 332 23333321 1
Q ss_pred HHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh------------hh----HHHHHhhCCCCC-
Q 037627 246 LLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK------------ET----WESLKRAFPDNK- 308 (858)
Q Consensus 246 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~------------~~----~~~l~~~l~~~~- 308 (858)
+...... .....+...+...-...+.++++|+++.. .. ...+...+....
T Consensus 85 ----~~~~~~~---------~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 151 (254)
T 1ixz_A 85 ----FVEMFVG---------VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 151 (254)
T ss_dssp ----HHHSCTT---------HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT
T ss_pred ----HHHHHhh---------HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC
Confidence 1111000 00111222222222345689999998522 11 223333332221
Q ss_pred -CCcEEEEEeCchhHHhh-cC---CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCCh
Q 037627 309 -NGSRVIITTRIKEVAER-SD---ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLP 376 (858)
Q Consensus 309 -~gs~ilvTtR~~~~~~~-~~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 376 (858)
....++.||..+..... .. .....+.+...+.++-.+++...+.......+ .....|++.+.|+-
T Consensus 152 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~---~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 152 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPGFV 221 (254)
T ss_dssp TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCC
T ss_pred CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcc---cCHHHHHHHcCCCC
Confidence 22334455655543221 11 11256788888888888888776533221111 11345777777754
No 238
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.08 E-value=0.0025 Score=70.14 Aligned_cols=172 Identities=13% Similarity=0.061 Sum_probs=92.2
Q ss_pred cCCceeeccccHHHHHHHH---hcCC-------CCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCH
Q 037627 174 IEGNVVGFDDDVSKLLAKL---LNKE-------PRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDT 243 (858)
Q Consensus 174 ~~~~~vGr~~~~~~l~~~L---~~~~-------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 243 (858)
.-.+++|.+..++++.+.. .... .-.+-+.|+|++|+||||||+.++. .... ..+.++.+.-...
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~--~~~~---~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG--EARV---PFITASGSDFVEM 103 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHH--HTTC---CEEEEEGGGGTSS
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHH--HhCC---CEEEEehhHHHHh
Confidence 3457899888777665543 2210 1123489999999999999999997 3332 2344443321100
Q ss_pred HHHHHHHHHhccccccchhhhhccHHHHHHHHHHHhc----CceEEEEEEcCCCh------------h----hHHHHHhh
Q 037627 244 KDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQ----GKSYLVVVDDAWQK------------E----TWESLKRA 303 (858)
Q Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~----~~~~LlvlDd~~~~------------~----~~~~l~~~ 303 (858)
.. ......+...++ ..+.++++|+++.. + ...++...
T Consensus 104 --------------~~---------g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~ 160 (499)
T 2dhr_A 104 --------------FV---------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE 160 (499)
T ss_dssp --------------CT---------THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHH
T ss_pred --------------hh---------hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHH
Confidence 00 001111222222 24579999999532 1 12334443
Q ss_pred CCCC--CCCcEEEEEeCchhHHhh-cC---CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCCh
Q 037627 304 FPDN--KNGSRVIITTRIKEVAER-SD---ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLP 376 (858)
Q Consensus 304 l~~~--~~gs~ilvTtR~~~~~~~-~~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 376 (858)
+... ..+..++.||..+..... .. .....+.+...+.++-.+++..++.......+ .....|+..+.|+.
T Consensus 161 Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~d---v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 161 MDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPGFV 236 (499)
T ss_dssp GGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCS---STTHHHHTTSCSCC
T ss_pred hcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChH---HHHHHHHHhcCCCC
Confidence 3322 223445556665544221 11 11146788888888888888776543221111 11355777887776
No 239
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.03 E-value=0.00097 Score=74.96 Aligned_cols=160 Identities=13% Similarity=0.125 Sum_probs=78.2
Q ss_pred CceeeccccHHHHHHHHh----cCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHH
Q 037627 176 GNVVGFDDDVSKLLAKLL----NKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRII 251 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~----~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 251 (858)
..++|-+.-.+.+.+.+. .......++.|+|++|+||||||+.++. .....| ..++++...+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~--~l~~~~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK--SLGRKF---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH--HHTCEE---EEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH--hcCCCe---EEEEecccchhhhhhhHHH
Confidence 457787777776655432 1222456899999999999999999987 333222 2233332222111111111
Q ss_pred HhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChhh------HHHHHhhCCCCC---------------CC
Q 037627 252 RSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKET------WESLKRAFPDNK---------------NG 310 (858)
Q Consensus 252 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~------~~~l~~~l~~~~---------------~g 310 (858)
...+. ....+...+... ....-++++|+++.... ...+...+.... .+
T Consensus 156 ~~ig~----------~~~~~~~~~~~a-~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~ 224 (543)
T 3m6a_A 156 TYVGA----------MPGRIIQGMKKA-GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSK 224 (543)
T ss_dssp ------------------CHHHHHHTT-CSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSS
T ss_pred HHhcc----------CchHHHHHHHHh-hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccc
Confidence 11110 011112222222 22333888999986421 233343332111 23
Q ss_pred cEEEEEeCchhH-HhhcCCCCceeecCCCChhHHHHHHHHHh
Q 037627 311 SRVIITTRIKEV-AERSDENAYAHKLRFLRSDESWELFCEKA 351 (858)
Q Consensus 311 s~ilvTtR~~~~-~~~~~~~~~~~~l~~L~~~e~~~l~~~~~ 351 (858)
..+|.||..... ..........+.+.+++.++-.+++..+.
T Consensus 225 v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 225 VLFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp CEEEEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred eEEEeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 466666654421 11100111468899999999888887654
No 240
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.97 E-value=0.0017 Score=76.63 Aligned_cols=175 Identities=12% Similarity=0.111 Sum_probs=94.9
Q ss_pred CCceeeccccHHHHHHHHhc-----------CCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCH
Q 037627 175 EGNVVGFDDDVSKLLAKLLN-----------KEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDT 243 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 243 (858)
-+.++|.+..++++.+++.. .-.....|.|+|++|+||||||+.++. .....| +.++...
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~--~l~~~~---i~v~~~~---- 273 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLINGPE---- 273 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH--TTTCEE---EEEEHHH----
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH--HcCCcE---EEEEchH----
Confidence 35689999999999888753 123456799999999999999999997 333222 3333211
Q ss_pred HHHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh--------h-----hHHHHHhhCCC--CC
Q 037627 244 KDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK--------E-----TWESLKRAFPD--NK 308 (858)
Q Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--------~-----~~~~l~~~l~~--~~ 308 (858)
+. .... ......+...+.......+.++++|+++.. . ....+...+.. ..
T Consensus 274 ------l~----~~~~-----g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~ 338 (806)
T 1ypw_A 274 ------IM----SKLA-----GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR 338 (806)
T ss_dssp ------HS----SSST-----THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTT
T ss_pred ------hh----hhhh-----hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccc
Confidence 10 0000 001122223333333456789999998522 0 11223322221 12
Q ss_pred CCcEEEEEeCchh-HHhhcC---CCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCCh
Q 037627 309 NGSRVIITTRIKE-VAERSD---ENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLP 376 (858)
Q Consensus 309 ~gs~ilvTtR~~~-~~~~~~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 376 (858)
.+..+|.||.... +..... .....+.+...+.++-.+++...+........ ....+++..+.|..
T Consensus 339 ~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~---~~l~~la~~t~g~~ 407 (806)
T 1ypw_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHV 407 (806)
T ss_dssp SCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTT---CCTHHHHHSCSSCC
T ss_pred ccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCccc---chhHHHHHhhcCcc
Confidence 3455666665542 221111 11145778888888888888776543322111 11244566666654
No 241
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.95 E-value=0.0085 Score=61.07 Aligned_cols=176 Identities=14% Similarity=0.100 Sum_probs=89.2
Q ss_pred cCCceeeccccHHHHHHHHh---cC------C-CCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCH
Q 037627 174 IEGNVVGFDDDVSKLLAKLL---NK------E-PRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDT 243 (858)
Q Consensus 174 ~~~~~vGr~~~~~~l~~~L~---~~------~-~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 243 (858)
.-++++|.+..++++.+... .. + .-.+-+.|+|++|+||||||+.++. .... ..+.++..
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~--~~~~---~~i~~~~~----- 107 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG--EARV---PFITASGS----- 107 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHH--HTTC---CEEEEEHH-----
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHH--HcCC---CEEEecHH-----
Confidence 34568898877666654432 10 0 0112389999999999999999997 3332 23333321
Q ss_pred HHHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh------------h----hHHHHHhhCCCC
Q 037627 244 KDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK------------E----TWESLKRAFPDN 307 (858)
Q Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~------------~----~~~~l~~~l~~~ 307 (858)
. +...... .....+...+...-...+.++++|+++.. . ....+...+...
T Consensus 108 -~----~~~~~~~---------~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg 173 (278)
T 1iy2_A 108 -D----FVEMFVG---------VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 173 (278)
T ss_dssp -H----HHHSTTT---------HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTC
T ss_pred -H----HHHHHhh---------HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCC
Confidence 1 1111000 00111222222222345689999998521 1 122333333322
Q ss_pred C--CCcEEEEEeCchhHHh-hc---CCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCCh
Q 037627 308 K--NGSRVIITTRIKEVAE-RS---DENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGLP 376 (858)
Q Consensus 308 ~--~gs~ilvTtR~~~~~~-~~---~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 376 (858)
. ....++.||..+.... .. ......+.+...+.++-.+++...+.......+ .....|+..+.|+.
T Consensus 174 ~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~---~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 174 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPGFV 245 (278)
T ss_dssp CTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCC
T ss_pred CCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcc---cCHHHHHHHcCCCC
Confidence 2 1233444555543221 11 112257888888998888888876643221111 11345777777765
No 242
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.93 E-value=0.0019 Score=69.35 Aligned_cols=46 Identities=26% Similarity=0.310 Sum_probs=34.4
Q ss_pred CceeeccccHHHHHHHHhc----------------------------CCCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 176 GNVVGFDDDVSKLLAKLLN----------------------------KEPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~----------------------------~~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..++|.+..++.+...+.. .......+.++|++|+|||++|+.+++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 3578888888777766620 111245689999999999999999997
No 243
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.93 E-value=0.00016 Score=72.52 Aligned_cols=36 Identities=31% Similarity=0.468 Sum_probs=18.4
Q ss_pred CCcccceEeccCCccccc---CcccccCCCCcEEecccc
Q 037627 588 KLVNLKYLRLTNAHIDVI---PSCIAKLQRLQTLDISGN 623 (858)
Q Consensus 588 ~l~~L~~L~L~~n~i~~l---p~~l~~l~~L~~L~L~~n 623 (858)
++++|++|+|++|.|+.+ |..+..+++|+.|+|++|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 206 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC
Confidence 345555555555555433 233345555555555555
No 244
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.91 E-value=0.0023 Score=60.18 Aligned_cols=118 Identities=20% Similarity=0.101 Sum_probs=64.3
Q ss_pred EEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCC---CCHHHHHHHHHHhccc---------cccchhhhhcc
Q 037627 200 FVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQD---YDTKDLLLRIIRSFKI---------NVLTRELEEMR 267 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~---------~~~~~~~~~~~ 267 (858)
..|.|++..|.||||+|...+- +...+=-.+.++..-.. .....++..+. +.. .......+...
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~--v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHG--VEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGT--CEEEECCTTCCCCGGGHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCC--cEEEEcccccccCCCCcHHHHHH
Confidence 4677777777999999988876 33333334566654332 22233333320 000 00000011112
Q ss_pred HHHHHHHHHHHhcCceE-EEEEEcCCC-----hhhHHHHHhhCCCCCCCcEEEEEeCchh
Q 037627 268 EEDLERYLHNCLQGKSY-LVVVDDAWQ-----KETWESLKRAFPDNKNGSRVIITTRIKE 321 (858)
Q Consensus 268 ~~~~~~~l~~~l~~~~~-LlvlDd~~~-----~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 321 (858)
........++.+.+.+| |||||++-. .-..+++...+........||+|+|...
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 23344455555655444 999999832 2334556666655666778999999873
No 245
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.90 E-value=0.014 Score=61.54 Aligned_cols=157 Identities=9% Similarity=-0.064 Sum_probs=100.9
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHN 277 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 277 (858)
-.++..++|+.|.||++.+..+.... ....|+....+.+....+..++ .+.+..
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l-------------------------~~~~~~ 70 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVA-AAQGFEEHHTFSIDPNTDWNAI-------------------------FSLCQA 70 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHH-HHHTCCEEEEEECCTTCCHHHH-------------------------HHHHHH
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHH-HhCCCCeeEEEEecCCCCHHHH-------------------------HHHhcC
Confidence 45699999999999999999987631 1223432222223322333222 222211
Q ss_pred -HhcCceEEEEEEcCCC-h--hhHHHHHhhCCCCCCCcEEEEEeCc-------hhHHhhcCCCCceeecCCCChhHHHHH
Q 037627 278 -CLQGKSYLVVVDDAWQ-K--ETWESLKRAFPDNKNGSRVIITTRI-------KEVAERSDENAYAHKLRFLRSDESWEL 346 (858)
Q Consensus 278 -~l~~~~~LlvlDd~~~-~--~~~~~l~~~l~~~~~gs~ilvTtR~-------~~~~~~~~~~~~~~~l~~L~~~e~~~l 346 (858)
-+-+.+-++|+|+++. . +.++.+...+....+++.+|+++.. ..+..........++..+++.++....
T Consensus 71 ~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~ 150 (343)
T 1jr3_D 71 MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRW 150 (343)
T ss_dssp HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHH
T ss_pred cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHH
Confidence 1345677889999876 3 5677788777766667777776643 234444444447899999999999998
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHHHcCCChHHHHHH
Q 037627 347 FCEKAFRKSNGSEGLEKLGREMVEKCRGLPLAIVVL 382 (858)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plai~~~ 382 (858)
+.+.+...+.. -.++.+..|++.++|....+...
T Consensus 151 l~~~~~~~g~~--i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 151 VAARAKQLNLE--LDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHHHHHTTCE--ECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHHHHcCCC--CCHHHHHHHHHHhchHHHHHHHH
Confidence 88877544322 12467788999999998877653
No 246
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.82 E-value=0.0042 Score=73.40 Aligned_cols=46 Identities=22% Similarity=0.183 Sum_probs=36.6
Q ss_pred CceeeccccHHHHHHHHhcC-------CCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 176 GNVVGFDDDVSKLLAKLLNK-------EPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..++|.+..++.+...+... ......+.++|++|+|||++|+.+++
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 45889999888887776532 12235799999999999999999997
No 247
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.74 E-value=6.8e-05 Score=71.49 Aligned_cols=13 Identities=15% Similarity=0.424 Sum_probs=6.1
Q ss_pred CCccEEEEecccC
Q 037627 751 PNLECLSLKKSHL 763 (858)
Q Consensus 751 ~~L~~L~L~~n~l 763 (858)
++|++|+|++|.+
T Consensus 93 ~~L~~L~L~~N~i 105 (185)
T 1io0_A 93 NTLKSLNVESNFI 105 (185)
T ss_dssp SSCCEEECCSSCC
T ss_pred CCcCEEECcCCcC
Confidence 4444444444444
No 248
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.73 E-value=0.0079 Score=71.84 Aligned_cols=46 Identities=26% Similarity=0.316 Sum_probs=37.0
Q ss_pred CceeeccccHHHHHHHHhcC-------CCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 176 GNVVGFDDDVSKLLAKLLNK-------EPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..++|.+..++.+...+... ......+.|+|++|+|||++|+.+++
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999998888877532 11235899999999999999999987
No 249
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.73 E-value=0.0008 Score=68.51 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=45.3
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEe--CCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSV--SQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYL 275 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 275 (858)
..+++.|+|++|+|||+||.+++.. .-..++|+++ .+..+. .. .+.+...+.+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~----------~~----------~~le~~l~~i 176 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG----------YN----------TDFNVFVDDI 176 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT----------CB----------CCHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh----------hh----------cCHHHHHHHH
Confidence 3467899999999999999999873 1123567777 322110 00 1234445555
Q ss_pred HHHhcCceEEEEEEcCCCh
Q 037627 276 HNCLQGKSYLVVVDDAWQK 294 (858)
Q Consensus 276 ~~~l~~~~~LlvlDd~~~~ 294 (858)
.+.+...+ +||+|++...
T Consensus 177 ~~~l~~~~-LLVIDsI~aL 194 (331)
T 2vhj_A 177 ARAMLQHR-VIVIDSLKNV 194 (331)
T ss_dssp HHHHHHCS-EEEEECCTTT
T ss_pred HHHHhhCC-EEEEeccccc
Confidence 55555555 9999999653
No 250
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.72 E-value=0.0029 Score=66.24 Aligned_cols=100 Identities=17% Similarity=0.209 Sum_probs=58.9
Q ss_pred HHHHHHh-cCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccc-hhhh
Q 037627 187 KLLAKLL-NKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLT-RELE 264 (858)
Q Consensus 187 ~l~~~L~-~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~ 264 (858)
.+-..|. .+=+..+++.|+|++|+||||||.+++.. ....-..++|++.....+.. .++.++..... .-..
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~ 120 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQ 120 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEEC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhh
Confidence 3333443 23245679999999999999999999873 22222357899887776654 34444433210 0001
Q ss_pred hccHHHHHHHHHHHhc-CceEEEEEEcCCC
Q 037627 265 EMREEDLERYLHNCLQ-GKSYLVVVDDAWQ 293 (858)
Q Consensus 265 ~~~~~~~~~~l~~~l~-~~~~LlvlDd~~~ 293 (858)
..+.++....+...++ .+.-++|+|.+..
T Consensus 121 ~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 121 PDHGEQALEIVDELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp CSSHHHHHHHHHHHHHTSCCSEEEEECTTT
T ss_pred ccCHHHHHHHHHHHhhhcCCCeEEehHhhh
Confidence 1234455555555443 4566899998753
No 251
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.71 E-value=0.00062 Score=66.22 Aligned_cols=113 Identities=15% Similarity=0.075 Sum_probs=62.9
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHN 277 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 277 (858)
...++.|+|..|+||||++..++. +...+-..++.+...... . ....++..++...... .....+++.+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~--~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSV--EVESAPEILNYIMS 83 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCE--EESSTHHHHHHHHS
T ss_pred CcEEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCcccc--ccCCHHHHHHHHHH
Confidence 457999999999999999998887 333332234444433221 1 1123444444322111 11223445555555
Q ss_pred HhcCc-eEEEEEEcCCCh--hhHHHHHhhCCCCCCCcEEEEEeCch
Q 037627 278 CLQGK-SYLVVVDDAWQK--ETWESLKRAFPDNKNGSRVIITTRIK 320 (858)
Q Consensus 278 ~l~~~-~~LlvlDd~~~~--~~~~~l~~~l~~~~~gs~ilvTtR~~ 320 (858)
.+.+. .-+||+|.+... +.++.+.. +.+ .|..||+|.+..
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDK 126 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSB
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEeccc
Confidence 44444 449999999643 33333322 222 167799999854
No 252
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.57 E-value=0.0072 Score=61.22 Aligned_cols=86 Identities=12% Similarity=0.143 Sum_probs=53.8
Q ss_pred EEEEEecCcchHHHHHHHHhcCccccCC--cceEEEEEeCCCCCHHHHHHHHHHhccccccch-hhhhccHHHH-HHHHH
Q 037627 201 VISVYGMGGLGKTTLARKLYHNNDVKNK--FDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTR-ELEEMREEDL-ERYLH 276 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~-~~~l~ 276 (858)
++.|+|++|+||||||.+++.. .... -..++|++....++.. .++.++.....- -....+.++. ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 7899999999999999998863 2222 2468999988887764 256666543200 0011233444 33332
Q ss_pred HH--h-cCceEEEEEEcCCC
Q 037627 277 NC--L-QGKSYLVVVDDAWQ 293 (858)
Q Consensus 277 ~~--l-~~~~~LlvlDd~~~ 293 (858)
.. + .++.-+||+|-+..
T Consensus 103 ~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTT
T ss_pred HHHHhhccCceEEEEecccc
Confidence 22 2 45678999999854
No 253
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.55 E-value=0.0054 Score=64.02 Aligned_cols=58 Identities=16% Similarity=0.298 Sum_probs=40.4
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccC----CcceEEEEEeCCCCCHHHHHHHHHHhccc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKN----KFDRCAWVSVSQDYDTKDLLLRIIRSFKI 256 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 256 (858)
...++.|+|++|+||||||.+++....... .-..++|++....++...+. +++..++.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~ 167 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGL 167 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCC
Confidence 456999999999999999999986311111 02468999998877776654 34455543
No 254
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.48 E-value=0.0061 Score=60.69 Aligned_cols=57 Identities=12% Similarity=0.240 Sum_probs=37.8
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccC----CcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKN----KFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
...++.|+|++|+|||||+..++....... .-..++|++....+....+ .+++..++
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g 83 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYG 83 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcC
Confidence 456999999999999999999986211111 1357889988775555443 33444443
No 255
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.40 E-value=0.014 Score=61.38 Aligned_cols=67 Identities=15% Similarity=0.174 Sum_probs=44.2
Q ss_pred HHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccC----CcceEEEEEeCCCCCHHHHHHHHHHhcc
Q 037627 188 LLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKN----KFDRCAWVSVSQDYDTKDLLLRIIRSFK 255 (858)
Q Consensus 188 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 255 (858)
+-..|..+=+...++.|+|++|+||||||..++....... .-..++|++....+++..+. +++..++
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g 181 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFN 181 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcC
Confidence 3333433334567999999999999999999886311211 22468999998877776554 3444444
No 256
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.38 E-value=0.0057 Score=60.45 Aligned_cols=118 Identities=17% Similarity=0.214 Sum_probs=61.3
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccch---h------------
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTR---E------------ 262 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~------------ 262 (858)
...+++|+|++|+|||||++.++.. ....-..++|++... ....+...+. .++...... .
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~--~~~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAK--GLRDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKE 96 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHH--HHHHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccC
Confidence 3469999999999999999999852 211112466766543 3444433332 333211000 0
Q ss_pred ----hhhccHHHHHHHHHHHhc-Cce--EEEEEEcCC-----ChhhHHHHHhhCCC--CCCCcEEEEEeCch
Q 037627 263 ----LEEMREEDLERYLHNCLQ-GKS--YLVVVDDAW-----QKETWESLKRAFPD--NKNGSRVIITTRIK 320 (858)
Q Consensus 263 ----~~~~~~~~~~~~l~~~l~-~~~--~LlvlDd~~-----~~~~~~~l~~~l~~--~~~gs~ilvTtR~~ 320 (858)
....+.+++...+.+.+. .++ .+||+|... +......+...+.. ...|..||++|...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 97 DQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred ceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 011134455444444432 233 499999976 33233333333221 12367788888754
No 257
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.36 E-value=0.0082 Score=62.67 Aligned_cols=66 Identities=12% Similarity=0.124 Sum_probs=43.5
Q ss_pred HHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccC---------Cc-----ceEEEEEeCCCCCHHHHHHHHHHhc
Q 037627 189 LAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKN---------KF-----DRCAWVSVSQDYDTKDLLLRIIRSF 254 (858)
Q Consensus 189 ~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~~~~~i~~~l 254 (858)
-..|..+=+...++.|+|.+|+|||+||.+++....... .. ..++|++....++++.+.. ++..+
T Consensus 88 D~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~ 166 (322)
T 2i1q_A 88 DSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHA 166 (322)
T ss_dssp HHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHH
T ss_pred HHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHc
Confidence 333433323567999999999999999999886311110 11 4789999988877766553 34444
Q ss_pred c
Q 037627 255 K 255 (858)
Q Consensus 255 ~ 255 (858)
+
T Consensus 167 g 167 (322)
T 2i1q_A 167 G 167 (322)
T ss_dssp T
T ss_pred C
Confidence 4
No 258
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.28 E-value=0.0078 Score=63.47 Aligned_cols=88 Identities=23% Similarity=0.277 Sum_probs=54.6
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccch-hhhhccHHHHHHHHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTR-ELEEMREEDLERYLH 276 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~l~ 276 (858)
..+++.|+|.+|+||||||.+++.. ....-..++|++....++.. .+..++.....- -....+.+++...+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 4568999999999999999998863 22222368999998776653 234444321100 001123455556665
Q ss_pred HHhc-CceEEEEEEcCC
Q 037627 277 NCLQ-GKSYLVVVDDAW 292 (858)
Q Consensus 277 ~~l~-~~~~LlvlDd~~ 292 (858)
...+ ...-+||+|.+.
T Consensus 146 ~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHTTTCCSEEEEECTT
T ss_pred HHHhcCCCCEEEEeChH
Confidence 5554 345699999974
No 259
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.24 E-value=0.0032 Score=65.15 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=34.1
Q ss_pred ccHHHHHHHHhcCCC-CcEEEEEEecCcchHHHHHHHHhcCcccc-CCcceEEEEEe
Q 037627 183 DDVSKLLAKLLNKEP-RRFVISVYGMGGLGKTTLARKLYHNNDVK-NKFDRCAWVSV 237 (858)
Q Consensus 183 ~~~~~l~~~L~~~~~-~~~vv~I~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~wv~~ 237 (858)
..++.+.+++..... ....+.|+|++|+|||+||..+++. .. ..-..++++++
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~--~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 135 EAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHE--LSEKKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHH--HHHHSCCCEEEEEH
T ss_pred HHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEH
Confidence 344445555554322 2468899999999999999999983 32 22234556654
No 260
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.18 E-value=0.0086 Score=62.88 Aligned_cols=89 Identities=20% Similarity=0.254 Sum_probs=53.9
Q ss_pred CCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccch-hhhhccHHHHHHHH
Q 037627 197 PRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTR-ELEEMREEDLERYL 275 (858)
Q Consensus 197 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~l 275 (858)
+..+++.|+|++|+||||||.+++.. ....-..++|++.....+.. .++.++.....- -....+.++....+
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 34579999999999999999999863 22222468899988776653 234444321100 00111334444444
Q ss_pred HHHhc-CceEEEEEEcCC
Q 037627 276 HNCLQ-GKSYLVVVDDAW 292 (858)
Q Consensus 276 ~~~l~-~~~~LlvlDd~~ 292 (858)
..... .+.-+||+|.+.
T Consensus 132 ~~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHHTTTCCSEEEEECGG
T ss_pred HHHHhcCCCCEEEEcChH
Confidence 44443 346699999874
No 261
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.96 E-value=0.041 Score=54.02 Aligned_cols=47 Identities=21% Similarity=0.357 Sum_probs=32.2
Q ss_pred CCcEEEEEEecCcchHHHHHHHHhcCccc---cC-CcceEEEEEeCCCCCH
Q 037627 197 PRRFVISVYGMGGLGKTTLARKLYHNNDV---KN-KFDRCAWVSVSQDYDT 243 (858)
Q Consensus 197 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~---~~-~f~~~~wv~~~~~~~~ 243 (858)
....+++|+|+.|+|||||++.++..... .. ....++|+........
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 34579999999999999999999752111 11 1345788876554443
No 262
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.92 E-value=0.0097 Score=62.54 Aligned_cols=88 Identities=18% Similarity=0.245 Sum_probs=52.5
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchh-hhhccHHHHHHHHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRE-LEEMREEDLERYLH 276 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~l~ 276 (858)
..+++.|+|.+|+||||||.+++.. ....-..++|++....++... +..++.....-. ....+.+++.+.+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 4569999999999999999998863 222223689999987776532 344443211000 00112344444444
Q ss_pred HHh-cCceEEEEEEcCC
Q 037627 277 NCL-QGKSYLVVVDDAW 292 (858)
Q Consensus 277 ~~l-~~~~~LlvlDd~~ 292 (858)
... ..+.-+||+|.+.
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 333 2445689999874
No 263
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.91 E-value=0.015 Score=59.69 Aligned_cols=92 Identities=21% Similarity=0.222 Sum_probs=49.5
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHH--HHHHHHHHhccccccchhhhhccHHH-HHHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTK--DLLLRIIRSFKINVLTRELEEMREED-LERY 274 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~-~~~~ 274 (858)
...+++|+|++|+||||++..++.. .+..-..+.++... .+... +.+...+...+.+..+.. ...+... ..+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~-s~~~~~~v~~~a 178 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHS-EGADPAAVAFDA 178 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCS-TTCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecC-CccCHHHHHHHH
Confidence 4579999999999999999999873 32222235555543 23322 222333444333221111 1112222 2334
Q ss_pred HHHHhcCceEEEEEEcCCC
Q 037627 275 LHNCLQGKSYLVVVDDAWQ 293 (858)
Q Consensus 275 l~~~l~~~~~LlvlDd~~~ 293 (858)
+...+....-++|+|-.-.
T Consensus 179 l~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 179 VAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHTTCSEEEEEECCC
T ss_pred HHHHHhcCCCEEEEECCCc
Confidence 5554555566889998743
No 264
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.90 E-value=0.018 Score=53.73 Aligned_cols=20 Identities=45% Similarity=0.620 Sum_probs=18.8
Q ss_pred EEEEEEecCcchHHHHHHHH
Q 037627 200 FVISVYGMGGLGKTTLARKL 219 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~ 219 (858)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 265
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.81 E-value=0.03 Score=57.98 Aligned_cols=53 Identities=25% Similarity=0.278 Sum_probs=39.2
Q ss_pred CCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHh
Q 037627 197 PRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRS 253 (858)
Q Consensus 197 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 253 (858)
....++.|.|.+|+||||||..++.....+. ..++|++.. .+...+..++...
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 3456999999999999999999986322222 568888876 4567777777654
No 266
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.76 E-value=0.13 Score=50.26 Aligned_cols=52 Identities=13% Similarity=0.077 Sum_probs=32.6
Q ss_pred HHHHHhcCceEEEEEEcCCC---hhhHHHHHhh-CCCCCCCcEEEEEeCchhHHhh
Q 037627 274 YLHNCLQGKSYLVVVDDAWQ---KETWESLKRA-FPDNKNGSRVIITTRIKEVAER 325 (858)
Q Consensus 274 ~l~~~l~~~~~LlvlDd~~~---~~~~~~l~~~-l~~~~~gs~ilvTtR~~~~~~~ 325 (858)
.+.+.+..++-++++|+.-. ...-..+... +.....|..||++|.+......
T Consensus 140 ~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~ 195 (229)
T 2pze_A 140 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK 195 (229)
T ss_dssp HHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH
T ss_pred HHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHh
Confidence 45556667788999999753 3344455554 2333346678888888765543
No 267
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.75 E-value=0.0082 Score=60.07 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.3
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+++|.|+.|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 356999999999999999998883
No 268
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.73 E-value=0.031 Score=58.70 Aligned_cols=57 Identities=19% Similarity=0.317 Sum_probs=36.8
Q ss_pred CCcEEEEEEecCcchHHHHHHHHhcCccccCCc----ceEEEEEeCCCCCHHHHHHHHHHhc
Q 037627 197 PRRFVISVYGMGGLGKTTLARKLYHNNDVKNKF----DRCAWVSVSQDYDTKDLLLRIIRSF 254 (858)
Q Consensus 197 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~i~~~l 254 (858)
+...++.|+|++|+|||||+..++......... ..++|++....+.... +..++...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~-i~~i~q~~ 189 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNR 189 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH-HHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH-HHHHHHHc
Confidence 456899999999999999999998631111111 2458988766554433 33344443
No 269
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.59 E-value=0.03 Score=59.77 Aligned_cols=68 Identities=16% Similarity=0.260 Sum_probs=41.8
Q ss_pred HHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccc----cCCcceEEEEEeCCCCCHHHHHHHHHHhccc
Q 037627 188 LLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDV----KNKFDRCAWVSVSQDYDTKDLLLRIIRSFKI 256 (858)
Q Consensus 188 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 256 (858)
+-+.|..+=....++.|+|++|+|||||+..++-.... ...-..++|++....+....+ ..+++.++.
T Consensus 167 LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl 238 (400)
T 3lda_A 167 LDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGL 238 (400)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTC
T ss_pred HHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCC
Confidence 33334333234569999999999999999977531111 112346889988776655443 335555543
No 270
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.57 E-value=0.01 Score=52.23 Aligned_cols=54 Identities=22% Similarity=0.317 Sum_probs=42.4
Q ss_pred EEEeccc-CC--CCChhhhhccCCccEEEEecccCCCCCccccCCCCCCCeeEeeccccC
Q 037627 732 DLRLSGK-IE--KLPEDLHEVLPNLECLSLKKSHLKEDPMPKLEKLPNLTILDLGLKSYG 788 (858)
Q Consensus 732 ~L~l~~~-~~--~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 788 (858)
.++.+++ +. .+|..+ .++|+.|+|++|.|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555653 55 677654 468999999999998888888889999999999988764
No 271
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.49 E-value=0.07 Score=52.54 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=21.3
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|+|+.|+|||||++.++.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45999999999999999999986
No 272
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.46 E-value=0.012 Score=56.55 Aligned_cols=41 Identities=32% Similarity=0.479 Sum_probs=32.3
Q ss_pred ccccHHHHHHHHhcC-CCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 181 FDDDVSKLLAKLLNK-EPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 181 r~~~~~~l~~~L~~~-~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
|++.++.+.+.+... .....+++|+|+.|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455667777777653 34567999999999999999999986
No 273
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.46 E-value=0.0087 Score=65.90 Aligned_cols=43 Identities=21% Similarity=0.277 Sum_probs=36.7
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcC
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
..++|++..++.+...+..+. -|.|+|++|+|||+||+.+++.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHHH
Confidence 358899999988888876654 7899999999999999999983
No 274
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.41 E-value=0.1 Score=51.86 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=21.1
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|.|+.|+|||||++.++-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45999999999999999999975
No 275
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.41 E-value=0.029 Score=60.25 Aligned_cols=91 Identities=24% Similarity=0.302 Sum_probs=46.9
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCH--HHHHHHHHHhccccccchhhhhccHHHHH-HH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDT--KDLLLRIIRSFKINVLTRELEEMREEDLE-RY 274 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~~-~~ 274 (858)
..+++.++|++|+||||++..++.. .+..=..+..++... +.+ .+.+.......+.+..... ...+...+. ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~--l~~~G~kVllv~~D~-~r~~a~eqL~~~~~~~gv~~~~~~-~~~dp~~i~~~a 171 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF--YKKRGYKVGLVAADV-YRPAAYDQLLQLGNQIGVQVYGEP-NNQNPIEIAKKG 171 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH--HHHTTCCEEEEEECC-SCHHHHHHHHHHHHTTTCCEECCT-TCSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEecCc-cchhHHHHHHHHHHhcCCceeecc-ccCCHHHHHHHH
Confidence 4689999999999999999999873 222222344555432 322 2333333344443221111 111222222 33
Q ss_pred HHHHhcCceEEEEEEcCC
Q 037627 275 LHNCLQGKSYLVVVDDAW 292 (858)
Q Consensus 275 l~~~l~~~~~LlvlDd~~ 292 (858)
+........=++|+|-..
T Consensus 172 l~~a~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 172 VDIFVKNKMDIIIVDTAG 189 (433)
T ss_dssp HHHTTTTTCSEEEEEECC
T ss_pred HHHHHhcCCCEEEEECCC
Confidence 333322344466788764
No 276
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.38 E-value=0.002 Score=60.89 Aligned_cols=22 Identities=23% Similarity=0.043 Sum_probs=19.4
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 037627 200 FVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.++.|+|+.|+||||++..++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999977765
No 277
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.37 E-value=0.044 Score=56.79 Aligned_cols=25 Identities=40% Similarity=0.571 Sum_probs=22.6
Q ss_pred CCcEEEEEEecCcchHHHHHHHHhc
Q 037627 197 PRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 197 ~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
....+++|+|+.|+||||+++.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999986
No 278
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.33 E-value=0.0088 Score=57.89 Aligned_cols=37 Identities=30% Similarity=0.488 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 185 VSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 185 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
+++|.+.+........+++|.|+.|+|||||++.+..
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3344454443334567999999999999999999986
No 279
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.29 E-value=0.0086 Score=63.74 Aligned_cols=45 Identities=29% Similarity=0.305 Sum_probs=35.5
Q ss_pred ceeeccccHHHHHHHHh-------------cCCCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 177 NVVGFDDDVSKLLAKLL-------------NKEPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 177 ~~vGr~~~~~~l~~~L~-------------~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.++|.+..++.+...+. ......+.+.++|++|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 47888888888887773 1112346789999999999999999997
No 280
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.22 E-value=0.13 Score=51.44 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.9
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|.|+.|+|||||.+.++-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 34899999999999999999985
No 281
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.15 E-value=0.054 Score=56.11 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=38.4
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSF 254 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 254 (858)
...++.|.|.+|+||||||..++.. ....=..++|++.. .+...+..+++...
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~--~a~~g~~Vl~fSlE--ms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLS--ALNDDRGVAVFSLE--MSAEQLALRALSDL 97 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHH--HHHTTCEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCC--CCHHHHHHHHHHHh
Confidence 4569999999999999999999874 22222457787775 45677777776543
No 282
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.13 E-value=0.019 Score=66.61 Aligned_cols=174 Identities=11% Similarity=0.106 Sum_probs=79.2
Q ss_pred CCceeeccccHHHHHHHHhcC-----------CCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCH
Q 037627 175 EGNVVGFDDDVSKLLAKLLNK-----------EPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDT 243 (858)
Q Consensus 175 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 243 (858)
-..+.|.++..+++.+.+.-+ -...+-+.++|++|+|||.+|++++.. .... ++.++.
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~~-----f~~v~~---- 544 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIKG---- 544 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTCE-----EEECCH----
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCCc-----eEEecc----
Confidence 345677777777776665321 123456889999999999999999983 3322 333321
Q ss_pred HHHHHHHHHhccccccchhhhhccHHHHHHHHHHHhcCceEEEEEEcCCChh----------------hHHHHHhhCCCC
Q 037627 244 KDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQKE----------------TWESLKRAFPDN 307 (858)
Q Consensus 244 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~----------------~~~~l~~~l~~~ 307 (858)
. +++....+. ....+.+.+...-+..+.+|+||+++..- ...+|+..+...
T Consensus 545 ~----~l~s~~vGe---------se~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~ 611 (806)
T 3cf2_A 545 P----ELLTMWFGE---------SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 611 (806)
T ss_dssp H----HHHTTTCSS---------CHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSS
T ss_pred c----hhhccccch---------HHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCC
Confidence 1 222221111 22334444444445678999999987420 123444443322
Q ss_pred --CCCcEEEEEeCch-hHHhhc---CCCCceeecCCCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHHHcCCC
Q 037627 308 --KNGSRVIITTRIK-EVAERS---DENAYAHKLRFLRSDESWELFCEKAFRKSNGSEGLEKLGREMVEKCRGL 375 (858)
Q Consensus 308 --~~gs~ilvTtR~~-~~~~~~---~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 375 (858)
..+.-||-||..+ .+.... +.....+.+..-+.++-.++|+.+......... -....|++.+.|+
T Consensus 612 ~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~---~dl~~la~~t~g~ 682 (806)
T 3cf2_A 612 STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD---VDLEFLAKMTNGF 682 (806)
T ss_dssp CSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------
T ss_pred CCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCC---CCHHHHHHhCCCC
Confidence 2233333344333 221111 122256777666666666777655433221111 1234566666664
No 283
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.13 E-value=0.037 Score=59.41 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.8
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+|.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 368999999999999999998886
No 284
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.98 E-value=0.0098 Score=55.85 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=20.7
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 037627 200 FVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.+|.|+|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 285
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.96 E-value=0.017 Score=60.67 Aligned_cols=112 Identities=16% Similarity=0.116 Sum_probs=61.8
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNC 278 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 278 (858)
..+++|+|+.|+||||+.+.+.. .........+ +.+.++.... .... .....+.. ..... ......+...
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g--~~~~~~~~~i-~t~ed~~e~~--~~~~-~~~v~q~~-~~~~~---~~~~~~La~a 192 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLD--YLNNTKYHHI-LTIEDPIEFV--HESK-KCLVNQRE-VHRDT---LGFSEALRSA 192 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH--HHHHHCCCEE-EEEESSCCSC--CCCS-SSEEEEEE-BTTTB---SCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh--cccCCCCcEE-EEccCcHHhh--hhcc-ccceeeee-ecccc---CCHHHHHHHH
Confidence 35999999999999999999876 2221111222 2222221100 0000 00000000 00011 1234478888
Q ss_pred hcCceEEEEEEcCCChhhHHHHHhhCCCCCCCcEEEEEeCchhHH
Q 037627 279 LQGKSYLVVVDDAWQKETWESLKRAFPDNKNGSRVIITTRIKEVA 323 (858)
Q Consensus 279 l~~~~~LlvlDd~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~~~ 323 (858)
|...+=+|++|+..+.+.++.+..... .|..||+|+......
T Consensus 193 L~~~PdvillDEp~d~e~~~~~~~~~~---~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 193 LREDPDIILVGEMRDLETIRLALTAAE---TGHLVFGTLHTTSAA 234 (356)
T ss_dssp TTSCCSEEEESCCCSHHHHHHHHHHHH---TTCEEEEEESCSSHH
T ss_pred hhhCcCEEecCCCCCHHHHHHHHHHHh---cCCEEEEEEccChHH
Confidence 888999999999998777666554422 255688888765443
No 286
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.92 E-value=0.12 Score=50.76 Aligned_cols=105 Identities=17% Similarity=0.155 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCcc-ccCCc-ceEEEEEeCCCCCHHHHHHHHHHhcccccc---
Q 037627 185 VSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNND-VKNKF-DRCAWVSVSQDYDTKDLLLRIIRSFKINVL--- 259 (858)
Q Consensus 185 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~-~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--- 259 (858)
.++++..+..+ +.+.|.|+.|+||||+...+.-+.. ..... ...+.+..........+...+...++....
T Consensus 66 q~~~i~~i~~g----~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~ 141 (235)
T 3llm_A 66 ESEILEAISQN----SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSC 141 (235)
T ss_dssp HHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSE
T ss_pred HHHHHHHHhcC----CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceE
Confidence 34455555444 4899999999999987765543211 11112 122333333222233344444443332210
Q ss_pred -------------chhhhhccHHHHHHHHHHHhcCceEEEEEEcCCCh
Q 037627 260 -------------TRELEEMREEDLERYLHNCLQGKSYLVVVDDAWQK 294 (858)
Q Consensus 260 -------------~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~ 294 (858)
....--.+.+.+.+.+...+.+ --+||+|+++..
T Consensus 142 g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~-~~~lVlDEah~~ 188 (235)
T 3llm_A 142 GYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRG-ISHVIVDEIHER 188 (235)
T ss_dssp EEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTT-CCEEEECCTTSC
T ss_pred EEeechhhccCCCCCeEEEECHHHHHHHHHhhhcC-CcEEEEECCccC
Confidence 0011113455666666554433 347899999873
No 287
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.90 E-value=0.05 Score=54.00 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=29.3
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCC
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQ 239 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 239 (858)
...++.|.|++|+||||||.+++.. ....-..++|++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 3569999999999999999888753 222224578887654
No 288
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.86 E-value=0.048 Score=55.70 Aligned_cols=87 Identities=18% Similarity=0.205 Sum_probs=46.2
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCC-CCHHHHHHHHHHhccccccchhhhhccHHHHHHHHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQD-YDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLH 276 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 276 (858)
...+++|+|++|+||||++..++........ ..+..+..... ....+.+.......+.+... ..+...+...+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~----~~~~~~l~~al~ 178 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEV----CYTKEEFQQAKE 178 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCB----CSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEe----cCCHHHHHHHHH
Confidence 3569999999999999999999863221111 23555554332 22333343333333322211 012233444444
Q ss_pred HHhcCceEEEEEEcC
Q 037627 277 NCLQGKSYLVVVDDA 291 (858)
Q Consensus 277 ~~l~~~~~LlvlDd~ 291 (858)
. + .+.=++|+|-.
T Consensus 179 ~-~-~~~dlvIiDT~ 191 (296)
T 2px0_A 179 L-F-SEYDHVFVDTA 191 (296)
T ss_dssp H-G-GGSSEEEEECC
T ss_pred H-h-cCCCEEEEeCC
Confidence 3 3 44558889954
No 289
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.75 E-value=0.017 Score=54.98 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.9
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+++|+|++|+|||||++.++.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 356899999999999999999987
No 290
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.75 E-value=0.075 Score=54.87 Aligned_cols=39 Identities=21% Similarity=0.190 Sum_probs=27.8
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeC
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVS 238 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 238 (858)
..++++|+|++|+||||++..++.. ....-..+.++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~--l~~~g~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY--YAELGYKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH--HHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCC
Confidence 4679999999999999999999873 32222235555443
No 291
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.74 E-value=0.038 Score=52.98 Aligned_cols=86 Identities=19% Similarity=0.212 Sum_probs=47.9
Q ss_pred EEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcc---ccc--cchhhhhccHHHHHHHH
Q 037627 201 VISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFK---INV--LTRELEEMREEDLERYL 275 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~---~~~--~~~~~~~~~~~~~~~~l 275 (858)
+|.|.|++|+||||.|+.+++. |. ...++ ..+++++-+..-. ... ......-.+.+.+...+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~------~g-~~~is------tGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv 68 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE------KG-FVHIS------TGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALI 68 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH------HC-CEEEE------HHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH------HC-CeEEc------HHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHH
Confidence 5788999999999999999972 22 23343 3344444332110 000 00111123345566777
Q ss_pred HHHhcCceEEEEEEcCC-ChhhHHHH
Q 037627 276 HNCLQGKSYLVVVDDAW-QKETWESL 300 (858)
Q Consensus 276 ~~~l~~~~~LlvlDd~~-~~~~~~~l 300 (858)
.+.+..... +|||.+- +..+.+.+
T Consensus 69 ~~~l~~~~~-~ilDGfPRt~~Qa~~l 93 (206)
T 3sr0_A 69 EEVFPKHGN-VIFDGFPRTVKQAEAL 93 (206)
T ss_dssp HHHCCSSSC-EEEESCCCSHHHHHHH
T ss_pred HHhhccCCc-eEecCCchhHHHHHHH
Confidence 777765544 6889984 33444443
No 292
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.69 E-value=0.025 Score=57.64 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=33.6
Q ss_pred CCCcEEEEEEecCcchHHHHHHHHhcCccccC-CcceEEEEEeCCCCCHHHHHHHH
Q 037627 196 EPRRFVISVYGMGGLGKTTLARKLYHNNDVKN-KFDRCAWVSVSQDYDTKDLLLRI 250 (858)
Q Consensus 196 ~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i 250 (858)
.....+|+|+|..|+||||||+.+........ ....+..|+....+-.......+
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l 83 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKL 83 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHH
Confidence 44578999999999999999998876311110 02234444655444334444444
No 293
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.68 E-value=0.12 Score=57.56 Aligned_cols=53 Identities=13% Similarity=0.060 Sum_probs=38.3
Q ss_pred CCcEEEEEEecCcchHHHHHHHHhcCccccCC-cceEEEEEeCCCCCHHHHHHHHHHh
Q 037627 197 PRRFVISVYGMGGLGKTTLARKLYHNNDVKNK-FDRCAWVSVSQDYDTKDLLLRIIRS 253 (858)
Q Consensus 197 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~ 253 (858)
....++.|.|.+|+||||||.+++.+ .... =..++|++... +..++...++..
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~--~a~~~g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQ--WGTAMGKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHH--HTTTSCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHH--HHHhcCCcEEEEeccC--CHHHHHHHHHHH
Confidence 34569999999999999999999873 2222 23578888754 466777776543
No 294
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.68 E-value=0.14 Score=53.44 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.4
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+++|.|+.|+|||||++.+.-
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHhc
Confidence 346999999999999999999875
No 295
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.65 E-value=0.026 Score=58.72 Aligned_cols=24 Identities=21% Similarity=0.104 Sum_probs=21.4
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
....++|+|++|+|||||++.+++
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHH
Confidence 356899999999999999999876
No 296
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.60 E-value=0.3 Score=49.49 Aligned_cols=52 Identities=13% Similarity=0.071 Sum_probs=32.4
Q ss_pred HHHHHhcCceEEEEEEcCCC---hhhHHHHHhhC-CCCCCCcEEEEEeCchhHHhh
Q 037627 274 YLHNCLQGKSYLVVVDDAWQ---KETWESLKRAF-PDNKNGSRVIITTRIKEVAER 325 (858)
Q Consensus 274 ~l~~~l~~~~~LlvlDd~~~---~~~~~~l~~~l-~~~~~gs~ilvTtR~~~~~~~ 325 (858)
.+.+.+..++-++++|+.-. ...-..+...+ .....|..||++|.+......
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~ 224 (290)
T 2bbs_A 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK 224 (290)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH
T ss_pred HHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHc
Confidence 45555667788999999753 33344455542 232346678888888765543
No 297
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.55 E-value=0.057 Score=55.16 Aligned_cols=89 Identities=26% Similarity=0.177 Sum_probs=45.9
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHH--HHHHHHHhccccccchhhhhccHHHHH-HHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKD--LLLRIIRSFKINVLTRELEEMREEDLE-RYL 275 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~~~~-~~l 275 (858)
..+++|+|.+|+||||++..++.. ....-..+.++.... ..... .+..+....+....+... ..+...+. ..+
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~--~~~~~~~v~l~~~d~-~~~~~~~ql~~~~~~~~l~~~~~~~-~~~p~~l~~~~l 173 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVAADT-QRPAAREQLRLLGEKVGVPVLEVMD-GESPESIRRRVE 173 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH--HHHTTCCEEEEECCS-SCHHHHHHHHHHHHHHTCCEEECCT-TCCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEecCCc-ccHhHHHHHHHhcccCCeEEEEcCC-CCCHHHHHHHHH
Confidence 578999999999999999999873 322222355555432 22222 122333333322211100 11233332 333
Q ss_pred HHHhcCceEEEEEEcC
Q 037627 276 HNCLQGKSYLVVVDDA 291 (858)
Q Consensus 276 ~~~l~~~~~LlvlDd~ 291 (858)
........=++|+|-.
T Consensus 174 ~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 174 EKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHTCCEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 3333244457889986
No 298
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.55 E-value=0.08 Score=54.04 Aligned_cols=91 Identities=23% Similarity=0.184 Sum_probs=47.5
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCC-CHHHHHHHHHHhccccccchhhhhccHHHHHHHHHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDY-DTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHN 277 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 277 (858)
..+++++|.+|+||||++..++.. ....-..+.+++..... ...+.+.......+.+..+.. ...+...+.....+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~-~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEP-GEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCT-TCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecC-CCCCHHHHHHHHHH
Confidence 679999999999999999999863 22222346666654322 222333334443333211110 11223333333333
Q ss_pred Hhc-CceEEEEEEcCC
Q 037627 278 CLQ-GKSYLVVVDDAW 292 (858)
Q Consensus 278 ~l~-~~~~LlvlDd~~ 292 (858)
.++ ..-=++|+|-.-
T Consensus 175 ~~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTAG 190 (297)
T ss_dssp HHHHTTCSEEEEECCC
T ss_pred HHHhCCCCEEEEeCCC
Confidence 333 333378888763
No 299
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.55 E-value=0.039 Score=48.52 Aligned_cols=43 Identities=26% Similarity=0.384 Sum_probs=34.9
Q ss_pred CccccccCCcccceEeccCCcccccCcc-cccCCCCcEEecccccc
Q 037627 581 NLPEEMVKLVNLKYLRLTNAHIDVIPSC-IAKLQRLQTLDISGNMA 625 (858)
Q Consensus 581 ~lp~~~~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~n~~ 625 (858)
.+|..+. .+|++|+|++|+|+.||.. |..+++|++|+|++|.+
T Consensus 24 ~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 24 SLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5665443 3799999999999999765 67899999999999954
No 300
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.55 E-value=0.016 Score=54.40 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=20.5
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 037627 200 FVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999986
No 301
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.52 E-value=0.014 Score=54.33 Aligned_cols=22 Identities=32% Similarity=0.202 Sum_probs=20.3
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 037627 200 FVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.+|+|.|++|+||||+|+.++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999986
No 302
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.50 E-value=0.014 Score=61.67 Aligned_cols=44 Identities=30% Similarity=0.332 Sum_probs=32.7
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
+.++|.+..++.+...+.... ..-+.|+|++|+|||++|+.+++
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHH
Confidence 458999886665544443322 23499999999999999999987
No 303
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.32 E-value=0.023 Score=54.57 Aligned_cols=24 Identities=46% Similarity=0.587 Sum_probs=22.1
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+|+|+|+.|+||||+++.++.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 304
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.31 E-value=0.018 Score=55.28 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=21.3
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+|+|+|++|+||||+|+.++.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 305
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.31 E-value=0.066 Score=54.35 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=21.0
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..++.|+|++|+|||||+..++.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45999999999999999999875
No 306
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.28 E-value=0.13 Score=55.47 Aligned_cols=104 Identities=22% Similarity=0.247 Sum_probs=60.5
Q ss_pred HHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCC-CHHHHHHHHHHhcccc--------c
Q 037627 188 LLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDY-DTKDLLLRIIRSFKIN--------V 258 (858)
Q Consensus 188 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~--------~ 258 (858)
.++.|.-- .+...++|.|.+|+|||+|+.++++. ..+.+-+.++++-+++.. ...+++.++...-... .
T Consensus 155 vID~l~pi-gkGqr~gIfgg~GvGKT~L~~~l~~~-~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rt 232 (498)
T 1fx0_B 155 VVNLLAPY-RRGGKIGLFGGAGVGKTVLIMELINN-IAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV 232 (498)
T ss_dssp THHHHSCC-CTTCCEEEEECSSSSHHHHHHHHHHH-TTTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCE
T ss_pred Eeeeeccc-ccCCeEEeecCCCCCchHHHHHHHHH-HHhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccce
Confidence 34444322 24557999999999999999999872 122344677888777654 4556666666531111 0
Q ss_pred -------cchhhhhccHHHHHHHHHHHhc---CceEEEEEEcCCC
Q 037627 259 -------LTRELEEMREEDLERYLHNCLQ---GKSYLVVVDDAWQ 293 (858)
Q Consensus 259 -------~~~~~~~~~~~~~~~~l~~~l~---~~~~LlvlDd~~~ 293 (858)
..........-...-.+.++++ ++.+||++||+..
T Consensus 233 vvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 233 ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 0001111112223334445553 5799999999853
No 307
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.27 E-value=0.03 Score=52.78 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 185 VSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 185 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
+..+..++.+ -+....+.|+|++|+||||+|..+++
T Consensus 45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 4445555543 33445799999999999999999987
No 308
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.27 E-value=0.02 Score=53.83 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=21.1
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999986
No 309
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.27 E-value=0.014 Score=54.91 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=20.0
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 037627 200 FVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
|.|+|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999986
No 310
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.19 E-value=0.024 Score=53.87 Aligned_cols=24 Identities=38% Similarity=0.383 Sum_probs=21.7
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 311
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.19 E-value=0.028 Score=55.77 Aligned_cols=36 Identities=19% Similarity=0.099 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 186 SKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 186 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.++.+...........|+|.|++|+||||+|+.+.+
T Consensus 16 ~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 16 NELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp HHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 334433333333567899999999999999999986
No 312
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.17 E-value=0.018 Score=54.46 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.9
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.+.|.|+|++|+||||+|+.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 313
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.13 E-value=0.3 Score=50.88 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=21.0
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|.|+.|+|||||.+.++-
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHT
T ss_pred CCEEEEECCCCccHHHHHHHHHc
Confidence 45999999999999999999975
No 314
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.12 E-value=0.11 Score=55.65 Aligned_cols=65 Identities=26% Similarity=0.340 Sum_probs=41.7
Q ss_pred HHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCC-CHHHHHHHHHHh
Q 037627 187 KLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDY-DTKDLLLRIIRS 253 (858)
Q Consensus 187 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 253 (858)
+.++.|.-- .+...++|.|.+|+|||+|+.++++. ..+.+-+.++++-+++.. ...++++++...
T Consensus 142 r~ID~l~pi-gkGQr~~Ifgg~G~GKT~L~~~i~~~-~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPY-AKGGKIGLFGGAGVGKTVLIMELINN-VAKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCE-ETTCEEEEEECTTSSHHHHHHHHHHH-TTTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEeccccc-ccCCeeeeecCCCCChHHHHHHHHHh-hHhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 445555322 23458999999999999999999872 112333567777776543 345566666553
No 315
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.10 E-value=0.081 Score=56.95 Aligned_cols=50 Identities=26% Similarity=0.451 Sum_probs=31.9
Q ss_pred EEEEEEecCcchHHHHHHHHhcCccccCCc-ceEEEEEeCCCC-CHHHHHHHHH
Q 037627 200 FVISVYGMGGLGKTTLARKLYHNNDVKNKF-DRCAWVSVSQDY-DTKDLLLRII 251 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~-~~~~~~~~i~ 251 (858)
+.++|+|.+|+|||||+..+... ....+ +.++++-+++.. ...+++.++.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~--~~~~~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHN--IAQEHGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHH--HHHHTCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhh--hhhccCcEEEEeeeccCchHHHHHHHHhh
Confidence 46899999999999999998873 22222 345666665543 2334444443
No 316
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.05 E-value=0.14 Score=55.83 Aligned_cols=64 Identities=19% Similarity=0.141 Sum_probs=42.1
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHh
Q 037627 186 SKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRS 253 (858)
Q Consensus 186 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 253 (858)
..+-+.+ .+=....++.|.|.+|+||||||..++...... .-..++|++... +...+..+++..
T Consensus 188 ~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~--~~~~l~~R~~~~ 251 (444)
T 2q6t_A 188 KELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEM--PAAQLTLRMMCS 251 (444)
T ss_dssp HHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred Hhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCC--CHHHHHHHHHHH
Confidence 3444444 443445699999999999999999998732211 123588887753 456777776543
No 317
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.02 E-value=0.097 Score=56.47 Aligned_cols=39 Identities=31% Similarity=0.317 Sum_probs=28.1
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCC-cceEEEEEeC
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNK-FDRCAWVSVS 238 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~wv~~~ 238 (858)
..++|.|+|.+|+||||++..++.. .... =..+.-+++.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~--l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKF--LREKHKKKVLVVSAD 138 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHH--HHHTSCCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHhcCCeEEEEecC
Confidence 4689999999999999999999873 3222 1245555554
No 318
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.00 E-value=0.037 Score=56.39 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.9
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...++.|.|++|+||||+|+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
No 319
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.99 E-value=0.21 Score=52.02 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.9
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|.|+.|+|||||.+.++-
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45999999999999999999975
No 320
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.99 E-value=0.032 Score=52.06 Aligned_cols=24 Identities=25% Similarity=0.542 Sum_probs=21.7
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+++|+|+.|+||||+++.++.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 321
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.99 E-value=0.19 Score=52.78 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=21.0
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|.|+.|+|||||.+.++-
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHc
Confidence 45999999999999999999975
No 322
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.97 E-value=0.24 Score=51.90 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=21.0
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|.|+.|+|||||.+.++-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 45999999999999999999975
No 323
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.97 E-value=0.02 Score=53.31 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=20.5
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 037627 200 FVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.+|+|+|+.|+||||+++.++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 324
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.96 E-value=0.026 Score=54.56 Aligned_cols=24 Identities=29% Similarity=0.602 Sum_probs=21.9
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+++|+|+.|+|||||++.++.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 356999999999999999999987
No 325
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.96 E-value=0.026 Score=53.68 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.4
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 037627 200 FVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.+|+|.|++|+||||+|+.+++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 326
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.90 E-value=0.028 Score=52.27 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=19.7
Q ss_pred cEEEEEEecCcchHHHHHHHHh
Q 037627 199 RFVISVYGMGGLGKTTLARKLY 220 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~ 220 (858)
..+++|+|+.|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 5699999999999999999754
No 327
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.89 E-value=0.21 Score=65.73 Aligned_cols=137 Identities=14% Similarity=0.096 Sum_probs=74.4
Q ss_pred EEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchh-hhhccHHHHHHHHHHH
Q 037627 200 FVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRE-LEEMREEDLERYLHNC 278 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~l~~~ 278 (858)
+-+.++|++|+|||++|+.+... . ..+ ..+.++.+...+...+...+-..+........ .-.. .
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~--~-~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P-----------~ 1332 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRN--S-SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLP-----------K 1332 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS--C-SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEE-----------B
T ss_pred CeEEEECCCCCCHHHHHHHHHhc--C-CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccC-----------C
Confidence 57889999999999999777753 2 222 35567777777776666555544432110000 0000 0
Q ss_pred hcCceEEEEEEcCCCh--------hhHHHHHhhCCCC-----C-------CCcEEEEEeCchh------HHhhcCCCCce
Q 037627 279 LQGKSYLVVVDDAWQK--------ETWESLKRAFPDN-----K-------NGSRVIITTRIKE------VAERSDENAYA 332 (858)
Q Consensus 279 l~~~~~LlvlDd~~~~--------~~~~~l~~~l~~~-----~-------~gs~ilvTtR~~~------~~~~~~~~~~~ 332 (858)
-.+++.++.+||++-. ...+-+...+... . .+..+|.|+-... +..........
T Consensus 1333 ~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~v 1412 (2695)
T 4akg_A 1333 SDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAI 1412 (2695)
T ss_dssp SSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEE
T ss_pred CCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeE
Confidence 0367889999996532 1233333332211 1 1233444443321 11111111256
Q ss_pred eecCCCChhHHHHHHHHHh
Q 037627 333 HKLRFLRSDESWELFCEKA 351 (858)
Q Consensus 333 ~~l~~L~~~e~~~l~~~~~ 351 (858)
+.+...+.++-..+|....
T Consensus 1413 i~i~~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1413 LYLGYPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp EECCCCTTTHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHH
Confidence 8888888888888887665
No 328
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.88 E-value=0.026 Score=54.15 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=21.4
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|+|+.|+||||+++.++.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999999986
No 329
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.87 E-value=0.074 Score=54.48 Aligned_cols=24 Identities=42% Similarity=0.530 Sum_probs=21.7
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+++|+|++|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 356999999999999999999986
No 330
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.81 E-value=0.24 Score=51.76 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=21.0
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|.|+.|+|||||.+.++-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHC
Confidence 45999999999999999999975
No 331
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.78 E-value=0.029 Score=53.99 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.0
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|+|+.|+|||||++.++.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 45899999999999999999986
No 332
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.73 E-value=0.058 Score=68.32 Aligned_cols=89 Identities=19% Similarity=0.273 Sum_probs=54.9
Q ss_pred CCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhh-hhccHHHHHHHH
Q 037627 197 PRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTREL-EEMREEDLERYL 275 (858)
Q Consensus 197 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~~l 275 (858)
+..+.+.|+|++|+|||+||.+++.. ...+=..++|+++....++.. ++.++.+...-.. .....++..+.+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 34679999999999999999999873 333334688898888776655 4444422110000 001123344444
Q ss_pred HHHh-cCceEEEEEEcCC
Q 037627 276 HNCL-QGKSYLVVVDDAW 292 (858)
Q Consensus 276 ~~~l-~~~~~LlvlDd~~ 292 (858)
.+.. ..+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 4443 3567799999985
No 333
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.71 E-value=0.043 Score=56.50 Aligned_cols=43 Identities=23% Similarity=0.326 Sum_probs=31.1
Q ss_pred eeccccHHHHHHHHhcC--CCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 179 VGFDDDVSKLLAKLLNK--EPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 179 vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
+|-...+..+...+... .....+++|.|+.|+||||+++.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 44445555555555443 34567999999999999999999876
No 334
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.69 E-value=0.029 Score=56.03 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.4
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 037627 200 FVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.+++|.|++|+||||||+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999986
No 335
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.68 E-value=0.023 Score=53.34 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=20.9
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.++|.|+|++|+||||+|+.++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45789999999999999999986
No 336
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.65 E-value=0.099 Score=54.33 Aligned_cols=104 Identities=14% Similarity=0.157 Sum_probs=56.8
Q ss_pred EEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHHHh
Q 037627 200 FVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHNCL 279 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 279 (858)
.+++|+|+.|+|||||++.++.- .. .-.+.+.+.-........ .-..+..- .. ........+...+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~--~~-~~~g~i~i~~~~e~~~~~----~~~~i~~~--~g-----gg~~~r~~la~aL 237 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF--IP-KEERIISIEDTEEIVFKH----HKNYTQLF--FG-----GNITSADCLKSCL 237 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG--SC-TTSCEEEEESSCCCCCSS----CSSEEEEE--CB-----TTBCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--Cc-CCCcEEEECCeecccccc----chhEEEEE--eC-----CChhHHHHHHHHh
Confidence 48999999999999999999862 22 224555554322211000 00000000 00 1112344566677
Q ss_pred cCceEEEEEEcCCChhhHHHHHhhCCCCCCCcEEEEEeCch
Q 037627 280 QGKSYLVVVDDAWQKETWESLKRAFPDNKNGSRVIITTRIK 320 (858)
Q Consensus 280 ~~~~~LlvlDd~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 320 (858)
..++=+|++|++.+.+.++.+. .+... +.-+|+||...
T Consensus 238 ~~~p~ilildE~~~~e~~~~l~-~~~~g--~~tvi~t~H~~ 275 (330)
T 2pt7_A 238 RMRPDRIILGELRSSEAYDFYN-VLCSG--HKGTLTTLHAG 275 (330)
T ss_dssp TSCCSEEEECCCCSTHHHHHHH-HHHTT--CCCEEEEEECS
T ss_pred hhCCCEEEEcCCChHHHHHHHH-HHhcC--CCEEEEEEccc
Confidence 7888899999998765555443 33222 22266666543
No 337
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.63 E-value=0.024 Score=54.51 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=21.0
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+|+|+|+.|+||||+|+.++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 338
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.62 E-value=0.13 Score=55.86 Aligned_cols=42 Identities=26% Similarity=0.486 Sum_probs=29.2
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCC
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYD 242 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 242 (858)
...+++|+|..|+|||||++.++. ..+.. .+.+++.....+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg--ll~~~-~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR--QFEQQ-GKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH--HHHHT-TCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHH--Hhhhc-CCeEEEecCcccc
Confidence 467999999999999999999986 22221 3445554444444
No 339
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.61 E-value=0.03 Score=60.25 Aligned_cols=46 Identities=30% Similarity=0.411 Sum_probs=35.3
Q ss_pred CceeeccccHHHHHHHHhcC------------CCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 176 GNVVGFDDDVSKLLAKLLNK------------EPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..++|.+..++.+...+... ....+-+.++|++|+||||+|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 46788888888877666321 11245689999999999999999997
No 340
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.61 E-value=0.031 Score=52.78 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=21.2
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...|+|+|+.|+||||+++.++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 341
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.59 E-value=0.04 Score=53.08 Aligned_cols=24 Identities=42% Similarity=0.711 Sum_probs=21.9
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+|+|+|++|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 342
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.59 E-value=0.029 Score=53.22 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.6
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 037627 200 FVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.+|+|.|++|+||||+|+.++.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999987
No 343
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.59 E-value=0.038 Score=53.48 Aligned_cols=24 Identities=46% Similarity=0.592 Sum_probs=21.8
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+++|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999999986
No 344
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.57 E-value=0.035 Score=52.64 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.3
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 037627 200 FVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.+++|.|+.|+|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999985
No 345
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.53 E-value=0.026 Score=54.27 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=21.8
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..++++|+|++|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999986
No 346
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.52 E-value=0.034 Score=52.02 Aligned_cols=21 Identities=43% Similarity=0.635 Sum_probs=19.4
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 037627 201 VISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.++|+|+.|+|||||++.++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999886
No 347
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.51 E-value=0.23 Score=54.41 Aligned_cols=24 Identities=42% Similarity=0.495 Sum_probs=20.8
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..++|+|+|.+|+||||++..++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999986
No 348
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.50 E-value=0.026 Score=53.38 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=20.3
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 037627 200 FVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
++++|.|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 349
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.50 E-value=0.046 Score=54.60 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=22.3
Q ss_pred CCcEEEEEEecCcchHHHHHHHHhc
Q 037627 197 PRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 197 ~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
....++.|+|++|+||||+|+.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999986
No 350
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.45 E-value=0.035 Score=52.81 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=21.0
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+|+|.|++|+||||+|+.++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 351
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.44 E-value=0.031 Score=51.82 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.8
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+|+|.|+.|+||||+|+.++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 352
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.43 E-value=0.055 Score=55.95 Aligned_cols=42 Identities=26% Similarity=0.367 Sum_probs=29.6
Q ss_pred eccccHHHHHHHHhcC--CCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 180 GFDDDVSKLLAKLLNK--EPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 180 Gr~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
+-+.-.+++++.+... .+....+.|+|++|+||||+++.++.
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3344455555555422 33456799999999999999998886
No 353
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.40 E-value=0.036 Score=53.33 Aligned_cols=24 Identities=25% Similarity=0.653 Sum_probs=21.5
Q ss_pred cEEEEEEecCcchHHHHHHHHhcC
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
..+++|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999873
No 354
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.40 E-value=0.15 Score=55.38 Aligned_cols=63 Identities=22% Similarity=0.164 Sum_probs=40.7
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHh
Q 037627 186 SKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRS 253 (858)
Q Consensus 186 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 253 (858)
..+-+.+ .+=....++.|.|.+|+||||+|.+++.+...+ -..++|++.... ...+..+++..
T Consensus 185 ~~LD~~l-gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms--~~ql~~R~~~~ 247 (444)
T 3bgw_A 185 TELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMG--KKENIKRLIVT 247 (444)
T ss_dssp HHHHHHH-SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSC--TTHHHHHHHHH
T ss_pred HHHHhhc-CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCC--HHHHHHHHHHH
Confidence 3444444 332345699999999999999999998742222 235778776643 44566665543
No 355
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.39 E-value=0.19 Score=53.85 Aligned_cols=37 Identities=38% Similarity=0.307 Sum_probs=26.5
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEe
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSV 237 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 237 (858)
..++.|+|++|+||||++..++.. ....-..+..+..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~--l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVAA 134 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEeec
Confidence 578999999999999999999873 3322223445544
No 356
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.36 E-value=0.037 Score=52.76 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=21.2
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+|+|.|++|+||||+|+.++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 357
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.35 E-value=0.042 Score=52.66 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.7
Q ss_pred CCcEEEEEEecCcchHHHHHHHHhc
Q 037627 197 PRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 197 ~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.+..+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999997
No 358
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.35 E-value=0.037 Score=52.38 Aligned_cols=24 Identities=21% Similarity=0.481 Sum_probs=21.6
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..++++|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 356899999999999999999986
No 359
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.32 E-value=0.3 Score=55.30 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.5
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+++|+|+.|.|||||++.++.
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456999999999999999999875
No 360
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.30 E-value=0.039 Score=55.39 Aligned_cols=23 Identities=30% Similarity=0.611 Sum_probs=21.2
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+|.|+|++|+||||+|+.++.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 361
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.29 E-value=0.18 Score=47.88 Aligned_cols=49 Identities=18% Similarity=0.269 Sum_probs=30.4
Q ss_pred EEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHH
Q 037627 201 VISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRII 251 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 251 (858)
.|+|-|.-|+||||.++.+++ ..+..-..+++..-.......+.++.++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHHh
Confidence 478889999999999999987 3333322344444333333344444444
No 362
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.24 E-value=0.041 Score=51.93 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=21.0
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...|+|.|++|+||||+|+.+++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 363
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.23 E-value=0.15 Score=49.03 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.6
Q ss_pred cEEEEEEecCcchHHHHHHHHhcC
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
...|+|.|+.|+||||+++.+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 364
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.21 E-value=0.044 Score=51.72 Aligned_cols=24 Identities=38% Similarity=0.595 Sum_probs=21.9
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+|.|.|++|+||||+++.++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 365
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.21 E-value=0.044 Score=52.60 Aligned_cols=24 Identities=42% Similarity=0.401 Sum_probs=21.8
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+|+|.|+.|+||||+|+.+++
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 366
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.19 E-value=0.031 Score=53.44 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=20.4
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.++++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999975
No 367
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.19 E-value=0.027 Score=53.09 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.1
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 037627 200 FVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.+|+|+|++|+||||+|+.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 368
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.17 E-value=0.043 Score=53.06 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.2
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+|+|.|++|+||||+|+.++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 369
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.16 E-value=0.051 Score=49.59 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.8
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+++|.|+.|+|||||++.++.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456999999999999999999986
No 370
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.15 E-value=0.036 Score=51.80 Aligned_cols=21 Identities=48% Similarity=0.577 Sum_probs=19.7
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 037627 201 VISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.|.|.|++|+||||+|+.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 371
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.15 E-value=0.045 Score=52.81 Aligned_cols=25 Identities=40% Similarity=0.413 Sum_probs=22.8
Q ss_pred CCcEEEEEEecCcchHHHHHHHHhc
Q 037627 197 PRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 197 ~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...++|.|.|++|+||||.|+.+++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999987
No 372
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.14 E-value=0.043 Score=54.81 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.9
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999986
No 373
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.13 E-value=0.18 Score=51.59 Aligned_cols=24 Identities=46% Similarity=0.553 Sum_probs=21.9
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+++|+|+.|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357999999999999999999986
No 374
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.13 E-value=0.18 Score=55.07 Aligned_cols=52 Identities=25% Similarity=0.339 Sum_probs=36.3
Q ss_pred CCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHH
Q 037627 197 PRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRII 251 (858)
Q Consensus 197 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 251 (858)
....++.|.|.+|+||||||..++...... .-..++|++... +...+...++
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHH
Confidence 345699999999999999999998742211 112578887654 4566666654
No 375
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.12 E-value=0.052 Score=57.56 Aligned_cols=110 Identities=18% Similarity=0.153 Sum_probs=57.4
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcce-EEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDR-CAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLH 276 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 276 (858)
...+++|+|+.|+||||+++.+... ......+ ++++...-.+.. . ..... ..+..-..+...+...+.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~--~~~~~~g~I~~~e~~~e~~~----~---~~~~~--v~Q~~~g~~~~~~~~~l~ 203 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVF----K---HKKSI--VNQREVGEDTKSFADALR 203 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH--HHHHSCCEEEEEESSCCSCC----C---CSSSE--EEEEEBTTTBSCSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh--cCcCCCcEEEEecccHhhhh----c---cCceE--EEeeecCCCHHHHHHHHH
Confidence 3569999999999999999999862 2211122 333332111000 0 00000 000000000112244666
Q ss_pred HHhcCceEEEEEEcCCChhhHHHHHhhCCCCCCCcEEEEEeCchh
Q 037627 277 NCLQGKSYLVVVDDAWQKETWESLKRAFPDNKNGSRVIITTRIKE 321 (858)
Q Consensus 277 ~~l~~~~~LlvlDd~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 321 (858)
..+...+-+|++|++.+.+.+..+.... ..|..|+.|+....
T Consensus 204 ~~L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 204 AALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp HHTTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred HHhhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 7777778899999998766555444332 23555777765443
No 376
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.11 E-value=0.041 Score=52.89 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=19.8
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 037627 201 VISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~ 221 (858)
+|+|+|+.|+||||+++.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999986
No 377
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.10 E-value=0.039 Score=52.71 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=21.1
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+|+|.|++|+||||+|+.+++
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 378
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.07 E-value=0.039 Score=52.97 Aligned_cols=21 Identities=29% Similarity=0.627 Sum_probs=19.8
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 037627 201 VISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.|+|.|+.|+||||+++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999987
No 379
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.04 E-value=0.047 Score=52.55 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.3
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 037627 200 FVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999985
No 380
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.98 E-value=0.047 Score=51.80 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=21.2
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+|+|.|++|+||||+|+.++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 381
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.96 E-value=0.033 Score=51.84 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=20.2
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 037627 200 FVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.+|.|+|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 382
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.95 E-value=0.031 Score=52.63 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=17.0
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 383
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.87 E-value=0.048 Score=52.58 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.1
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|.|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45999999999999999999986
No 384
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.86 E-value=0.05 Score=52.11 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=21.0
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+|+|+|++|+||||+|+.++.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 385
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.84 E-value=0.089 Score=50.04 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=19.8
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 037627 201 VISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 386
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.81 E-value=0.048 Score=52.90 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.8
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+++|+|+.|+|||||++.++.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 456999999999999999999986
No 387
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.81 E-value=0.057 Score=53.61 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=21.6
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+++|.|+.|+|||||++.++.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999999876
No 388
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.77 E-value=0.046 Score=50.52 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=19.7
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 037627 201 VISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.|+|.|++|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 389
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.77 E-value=0.049 Score=53.35 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=20.5
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 037627 200 FVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999986
No 390
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=92.77 E-value=0.73 Score=48.61 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=33.3
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..++|....+.++.+.+.........|.|+|.+|+||+++|+.+..
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~ 174 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHR 174 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHH
Confidence 3578887777776665543222234577999999999999999876
No 391
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.76 E-value=0.056 Score=55.62 Aligned_cols=25 Identities=44% Similarity=0.587 Sum_probs=22.5
Q ss_pred CCcEEEEEEecCcchHHHHHHHHhc
Q 037627 197 PRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 197 ~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
....+++|.|+.|+|||||++.++.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3567999999999999999999886
No 392
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.73 E-value=0.049 Score=52.61 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=21.3
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+|+|.|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 393
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.69 E-value=0.043 Score=53.37 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=21.1
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|+|+.|+|||||++.++.
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999986
No 394
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.67 E-value=0.051 Score=54.03 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=21.1
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|.|+.|+|||||++.+++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999985
No 395
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.66 E-value=0.053 Score=52.49 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=21.3
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+|+|.|+.|+||||+|+.+++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 396
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.64 E-value=0.088 Score=51.41 Aligned_cols=25 Identities=36% Similarity=0.399 Sum_probs=22.3
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcC
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
....|+|+|.+|+|||||+..++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999873
No 397
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.62 E-value=0.12 Score=54.34 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 185 VSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 185 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+.+.+........+|+|+|.+|+|||||+..++.
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4455555554445678999999999999999999876
No 398
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.58 E-value=0.06 Score=50.42 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.6
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+|+|+|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 399
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.57 E-value=0.089 Score=52.11 Aligned_cols=34 Identities=29% Similarity=0.372 Sum_probs=26.3
Q ss_pred HHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 188 LLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 188 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
+..++....+....+.++|++|+|||.+|..+++
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 4444544324456899999999999999999987
No 400
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.56 E-value=0.089 Score=54.15 Aligned_cols=40 Identities=28% Similarity=0.363 Sum_probs=29.3
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCC
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQ 239 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 239 (858)
+.+||+|+|-|||||||.+..++. -....=..+.-+++..
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~--aLA~~GkkVllID~Dp 86 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA--AFSILGKRVLQIGCDP 86 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEESS
T ss_pred CceEEEEECCCccCHHHHHHHHHH--HHHHCCCeEEEEecCC
Confidence 578999999999999999987765 2222223467777663
No 401
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.55 E-value=0.095 Score=51.49 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=21.2
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|+|+.|+|||||++.++-
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 45999999999999999999985
No 402
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.52 E-value=0.054 Score=51.29 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=22.0
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+|+|+|+.|+||||+|+.+.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999986
No 403
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.51 E-value=0.052 Score=51.54 Aligned_cols=21 Identities=52% Similarity=0.820 Sum_probs=19.8
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 037627 201 VISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~ 221 (858)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 404
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.48 E-value=0.26 Score=51.55 Aligned_cols=24 Identities=46% Similarity=0.553 Sum_probs=22.0
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+++|+|+.|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 457999999999999999999987
No 405
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.40 E-value=0.18 Score=49.33 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=21.8
Q ss_pred cEEEEEEecCcchHHHHHHHHhcC
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
...|+|.|+.|+||||+++.+++.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 406
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.39 E-value=0.061 Score=49.46 Aligned_cols=23 Identities=39% Similarity=0.294 Sum_probs=21.3
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.+++.|+|..|+|||||+..+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 407
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.37 E-value=0.13 Score=49.96 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=18.7
Q ss_pred cEEEEEEecCcchHHHHHHHHhcC
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
...|+|.|+.|+||||+++.+++.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 408
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.36 E-value=0.059 Score=49.90 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=20.4
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 037627 200 FVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
++++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999986
No 409
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.34 E-value=0.056 Score=52.94 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=21.0
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...|+|.|++|+||||+|+.++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 410
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.33 E-value=0.2 Score=53.42 Aligned_cols=95 Identities=14% Similarity=0.157 Sum_probs=51.0
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCcccc-CCc-ceEEEEEeCCC-CCHHHHHHHHHHhccccc--------cchhhhhcc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVK-NKF-DRCAWVSVSQD-YDTKDLLLRIIRSFKINV--------LTRELEEMR 267 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~-~~f-~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~--------~~~~~~~~~ 267 (858)
...++|.|..|+|||+|+.++++..... .+- -.++++-+++. ....+++..+...=.... .........
T Consensus 151 GQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~ 230 (465)
T 3vr4_D 151 GQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIA 230 (465)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHH
T ss_pred CCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHH
Confidence 3467899999999999999998743221 111 14666666543 344555555543210110 000001111
Q ss_pred HHHHHHHHHHHh---cCceEEEEEEcCCC
Q 037627 268 EEDLERYLHNCL---QGKSYLVVVDDAWQ 293 (858)
Q Consensus 268 ~~~~~~~l~~~l---~~~~~LlvlDd~~~ 293 (858)
.-...-.+.+++ .++.+||++||+..
T Consensus 231 a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 231 TPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 111223344444 37899999999853
No 411
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.30 E-value=0.11 Score=59.12 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=36.1
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 176 GNVVGFDDDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 176 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
+.++|.+..++.+...+..+ ..+.|+|++|+||||||+.++.
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhc
Confidence 56899988888887777654 3899999999999999999987
No 412
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.27 E-value=0.042 Score=53.19 Aligned_cols=21 Identities=43% Similarity=0.659 Sum_probs=19.8
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 037627 201 VISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~ 221 (858)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 413
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.26 E-value=0.091 Score=58.77 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=0.0
Q ss_pred CCcEEEEEEecCcchHHHHHHHH-hcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhh------------
Q 037627 197 PRRFVISVYGMGGLGKTTLARKL-YHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTREL------------ 263 (858)
Q Consensus 197 ~~~~vv~I~G~~GiGKTtLa~~~-~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~------------ 263 (858)
+...+++|.|+.|+|||||++.+ +. -....-.+.++++... ...-.......++........
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~--Gl~~~~~g~i~v~g~~---~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~ 111 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYN--GIIEFDEPGVFVTFEE---TPQDIIKNARSFGWDLAKLVDEGKLFILDASPD 111 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHHHCCCEEEEESSS---CHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH--HHHhCCCCEEEEEEeC---CHHHHHHHHHHcCCChHHhhccCcEEEEecCcc
Q ss_pred -------hhccHHHHHHHHHHHhc-CceEEEEEEcC-----------CChhhHHHHHhhCCCCCCCcEEEEEe
Q 037627 264 -------EEMREEDLERYLHNCLQ-GKSYLVVVDDA-----------WQKETWESLKRAFPDNKNGSRVIITT 317 (858)
Q Consensus 264 -------~~~~~~~~~~~l~~~l~-~~~~LlvlDd~-----------~~~~~~~~l~~~l~~~~~gs~ilvTt 317 (858)
+..+.+.+...+...+. +++-++++|.+ .....+..+...+.. .|..||++|
T Consensus 112 ~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~--~g~tvl~it 182 (525)
T 1tf7_A 112 PEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ--IGATTVMTT 182 (525)
T ss_dssp SSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH--HTCEEEEEE
T ss_pred cchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHH--CCCEEEEEe
No 414
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.23 E-value=0.06 Score=52.45 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.9
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...|+|.|++|+||||+|+.++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 415
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.21 E-value=0.14 Score=64.15 Aligned_cols=102 Identities=19% Similarity=0.209 Sum_probs=61.9
Q ss_pred HHHHHHHHh-cCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccch-h
Q 037627 185 VSKLLAKLL-NKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTR-E 262 (858)
Q Consensus 185 ~~~l~~~L~-~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~ 262 (858)
...|-..|. .+=+..+++.|+|++|+||||||.+++.. ....-..++|++.....+... ++.++.....- -
T Consensus 368 i~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~--~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i 440 (1706)
T 3cmw_A 368 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLC 440 (1706)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEE
T ss_pred cHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEE
Confidence 344444443 23234679999999999999999999873 322334689999888776532 45555432100 0
Q ss_pred hhhccHHHHHHHHHHHh-cCceEEEEEEcCCC
Q 037627 263 LEEMREEDLERYLHNCL-QGKSYLVVVDDAWQ 293 (858)
Q Consensus 263 ~~~~~~~~~~~~l~~~l-~~~~~LlvlDd~~~ 293 (858)
....+.+++.+.+.... ..+.-+||+|-+..
T Consensus 441 ~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 441 SQPDTGEQALEICDALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp ECCSSHHHHHHHHHHHHHHTCCSEEEESCSTT
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEECCHHH
Confidence 01123445555554443 34566999999863
No 416
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.20 E-value=0.071 Score=51.51 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=21.4
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+|+|.|+.|+||||+++.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999986
No 417
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.20 E-value=0.14 Score=52.37 Aligned_cols=51 Identities=18% Similarity=0.218 Sum_probs=33.6
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcc-eEEEEEeCCCCCHHHHHHHHHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFD-RCAWVSVSQDYDTKDLLLRIIR 252 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~ 252 (858)
...+++|.|++|+|||||++.++.. ....-. .++|++... +...+...+..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~~e~--~~~~~~~r~~~ 85 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAMLEE--SVEETAEDLIG 85 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEeCcC--CHHHHHHHHHH
Confidence 3569999999999999999999863 222212 466776543 34445444443
No 418
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.20 E-value=0.2 Score=48.17 Aligned_cols=53 Identities=15% Similarity=0.150 Sum_probs=32.0
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHH
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIR 252 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 252 (858)
...|+|.|+.|+||||+++.+++.... ..+..+++..-.......+.+++++.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQ-LGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-cCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 358999999999999999999874222 22323343333222223444555544
No 419
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.18 E-value=0.066 Score=53.39 Aligned_cols=23 Identities=43% Similarity=0.512 Sum_probs=21.3
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+|+|+|+.|+||||+++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45999999999999999999995
No 420
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.18 E-value=0.061 Score=51.56 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=21.2
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...|+|.|+.|+||||+++.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999997
No 421
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.17 E-value=0.061 Score=52.16 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=19.3
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 037627 201 VISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 422
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.16 E-value=0.078 Score=53.82 Aligned_cols=24 Identities=29% Similarity=0.649 Sum_probs=21.6
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+|+|+|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999983
No 423
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.05 E-value=0.091 Score=51.10 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=27.4
Q ss_pred ccHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhcC
Q 037627 183 DDVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 183 ~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
+..+++...+... ..++++|+|.+|+|||||+..++..
T Consensus 16 ~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 16 RLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3344444444322 4689999999999999999999873
No 424
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.04 E-value=0.17 Score=64.22 Aligned_cols=106 Identities=18% Similarity=0.203 Sum_probs=63.8
Q ss_pred eccccHHHHHHHHh-cCCCCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccc
Q 037627 180 GFDDDVSKLLAKLL-NKEPRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINV 258 (858)
Q Consensus 180 Gr~~~~~~l~~~L~-~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 258 (858)
+...-...|-..|. .+=+..+++.|+|++|+||||||.+++.. ....-..++|++.....+... ++.++...
T Consensus 363 ~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~--~a~~G~~vlyis~E~s~~~~~-----a~~lGvd~ 435 (2050)
T 3cmu_A 363 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDI 435 (2050)
T ss_dssp EECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCT
T ss_pred eeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcCCCHHHHH-----HHHcCCCH
Confidence 33333445555553 23234679999999999999999999873 332224689999888776542 44554432
Q ss_pred cch-hhhhccHHHHHHHHHHHh-cCceEEEEEEcCC
Q 037627 259 LTR-ELEEMREEDLERYLHNCL-QGKSYLVVVDDAW 292 (858)
Q Consensus 259 ~~~-~~~~~~~~~~~~~l~~~l-~~~~~LlvlDd~~ 292 (858)
..- -.+..+.+++.+.++... ....-+||+|-+.
T Consensus 436 ~~L~I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 436 DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp TTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred HHeEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHH
Confidence 100 001123455555555443 3456799999875
No 425
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.02 E-value=0.12 Score=50.35 Aligned_cols=23 Identities=35% Similarity=0.356 Sum_probs=21.1
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|+|+.|+|||||++.++-
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45999999999999999999985
No 426
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.01 E-value=0.085 Score=54.25 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=22.0
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..++|+|+|+.|+||||||..++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999997
No 427
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.00 E-value=0.066 Score=51.94 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=19.2
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 037627 201 VISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.|+|+|++|+||||+|+.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 428
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.98 E-value=0.061 Score=52.49 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.9
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...|+|.|++|+||||+|+.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 429
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.96 E-value=0.12 Score=51.68 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=21.2
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|+|+.|+|||||++.++-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46999999999999999999985
No 430
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.93 E-value=0.33 Score=52.48 Aligned_cols=91 Identities=15% Similarity=0.161 Sum_probs=49.0
Q ss_pred cEEEEEEecCcchHHHHHH-HHhcCccccCCcc-eEEEEEeCCCC-CHHHHHHHHHHhcccccc---chhhhhccH----
Q 037627 199 RFVISVYGMGGLGKTTLAR-KLYHNNDVKNKFD-RCAWVSVSQDY-DTKDLLLRIIRSFKINVL---TRELEEMRE---- 268 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~-~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~---- 268 (858)
...++|.|.+|+|||+||. .+++. . .-+ .++++-+++.. ...++.+.+...=..... ....++...
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 250 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQ--K--GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYI 250 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTT--T--TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHh--h--cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHH
Confidence 4578999999999999964 66663 2 234 34666676543 344555555442111100 000011001
Q ss_pred -HHHHHHHHHHh--cCceEEEEEEcCCC
Q 037627 269 -EDLERYLHNCL--QGKSYLVVVDDAWQ 293 (858)
Q Consensus 269 -~~~~~~l~~~l--~~~~~LlvlDd~~~ 293 (858)
-...-.+.+++ .++.+||++||+..
T Consensus 251 a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 251 APYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 11112233333 57899999999853
No 431
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.92 E-value=0.19 Score=48.59 Aligned_cols=25 Identities=32% Similarity=0.411 Sum_probs=22.5
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcC
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
....|+|.|+.|+||||+++.+.+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999973
No 432
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.91 E-value=0.088 Score=50.56 Aligned_cols=22 Identities=32% Similarity=0.237 Sum_probs=20.2
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 037627 200 FVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.+++|.|+.|+|||||++.++-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3899999999999999999875
No 433
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=91.83 E-value=0.41 Score=53.82 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.7
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.+++.|+|.+|+||||++..+..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~ 226 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVAD 226 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999886
No 434
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.81 E-value=0.43 Score=49.64 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=25.8
Q ss_pred HHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 187 KLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 187 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
++++.+..- .....++|.|.+|+|||+|+.++++
T Consensus 164 raID~l~Pi-grGQR~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 164 RLIDLFAPI-GKGQRGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp HHHHHHSCC-BTTCEEEEEECTTCCHHHHHHHHHH
T ss_pred hhhhhcccc-cCCceEEEecCCCCChhHHHHHHHH
Confidence 455555432 2355889999999999999998887
No 435
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.81 E-value=0.12 Score=50.78 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=20.7
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 037627 200 FVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.+++|.|+.|+|||||++.++-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6999999999999999999975
No 436
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.80 E-value=0.081 Score=53.62 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=21.3
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.++|+|.|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999999997
No 437
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=91.77 E-value=0.2 Score=53.88 Aligned_cols=93 Identities=11% Similarity=0.170 Sum_probs=50.8
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCccccCC--cceEEEEEeCCC-CCHHHHHHHHHHhccccc--------cchhhhhcc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVKNK--FDRCAWVSVSQD-YDTKDLLLRIIRSFKINV--------LTRELEEMR 267 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~--------~~~~~~~~~ 267 (858)
...++|.|.+|+|||+|+.+++.+...... =+.++++-+++. ....+++..+...=.... .........
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~ 231 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIV 231 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHH
Confidence 456788999999999999999874332111 135666666544 344556666654311110 000000011
Q ss_pred HHHHHHHHHHHh---cCceEEEEEEcC
Q 037627 268 EEDLERYLHNCL---QGKSYLVVVDDA 291 (858)
Q Consensus 268 ~~~~~~~l~~~l---~~~~~LlvlDd~ 291 (858)
.-...-.+.+++ +++.+||++||+
T Consensus 232 ~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 232 TPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 111222333343 378999999996
No 438
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.77 E-value=0.16 Score=54.18 Aligned_cols=95 Identities=11% Similarity=0.167 Sum_probs=50.7
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCcccc--------CCcc-eEEEEEeCCC-CCHHHHHHHHHHhccccc--c-chhhhh
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVK--------NKFD-RCAWVSVSQD-YDTKDLLLRIIRSFKINV--L-TRELEE 265 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~--------~~f~-~~~wv~~~~~-~~~~~~~~~i~~~l~~~~--~-~~~~~~ 265 (858)
...++|.|.+|+|||+|+.++++..... .+-+ .++++-+++. ....++...+...=.... . ....++
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~ 226 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADD 226 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCC
Confidence 4567899999999999999998743321 1111 4566666544 334455555443210100 0 000011
Q ss_pred ccH-----HHHHHHHHHHh---cCceEEEEEEcCCC
Q 037627 266 MRE-----EDLERYLHNCL---QGKSYLVVVDDAWQ 293 (858)
Q Consensus 266 ~~~-----~~~~~~l~~~l---~~~~~LlvlDd~~~ 293 (858)
... -...-.+.+++ .++.+||++||+..
T Consensus 227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 111 11223344444 37899999999853
No 439
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.71 E-value=0.088 Score=51.13 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.9
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+|+|+|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 440
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.70 E-value=0.058 Score=53.02 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=16.5
Q ss_pred cEEEEEEecCcchHHHHHHHHh-c
Q 037627 199 RFVISVYGMGGLGKTTLARKLY-H 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~-~ 221 (858)
..+++|+|+.|+|||||++.++ .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 4589999999999999999998 5
No 441
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.69 E-value=0.14 Score=51.23 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=21.5
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+++|+|+.|+|||||++.++-
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 346999999999999999999985
No 442
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.69 E-value=0.13 Score=51.73 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.9
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|+|+.|+|||||++.++-
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 45999999999999999999975
No 443
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=91.67 E-value=0.27 Score=55.61 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.5
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+++|+|+.|+|||||++.++.
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 356999999999999999999975
No 444
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.66 E-value=0.09 Score=49.31 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.6
Q ss_pred cEEEEEEecCcchHHHHHHHHhcC
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
.+.|.|.|+.|+||||||.+++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999873
No 445
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.62 E-value=0.098 Score=53.90 Aligned_cols=25 Identities=36% Similarity=0.464 Sum_probs=22.4
Q ss_pred CCcEEEEEEecCcchHHHHHHHHhc
Q 037627 197 PRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 197 ~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
....+++|+|+.|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999986
No 446
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.62 E-value=0.081 Score=54.58 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.8
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 037627 200 FVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.+|+|.|+.|+||||||..++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999987
No 447
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.59 E-value=0.07 Score=50.36 Aligned_cols=22 Identities=36% Similarity=0.397 Sum_probs=19.9
Q ss_pred EEEEEecCcchHHHHHHHHhcC
Q 037627 201 VISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
+++|+|+.|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999998863
No 448
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.50 E-value=0.13 Score=54.35 Aligned_cols=36 Identities=28% Similarity=0.259 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 186 SKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 186 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+.+.+.-.-+...+++|+|++|+|||||++.++.
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 344444433334567999999999999999999986
No 449
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.39 E-value=0.15 Score=49.95 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=22.4
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcC
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
....|+|.|+.|+||||+++.++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999973
No 450
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.37 E-value=0.15 Score=51.21 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=21.5
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+++|+|+.|+|||||++.++-
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346999999999999999999975
No 451
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.34 E-value=0.15 Score=50.48 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=21.1
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|+|+.|+|||||++.++.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45999999999999999999976
No 452
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.34 E-value=0.089 Score=53.90 Aligned_cols=22 Identities=36% Similarity=0.309 Sum_probs=20.8
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 037627 200 FVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
++|+|+|+.|+||||||+.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999997
No 453
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.32 E-value=0.57 Score=52.07 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=21.8
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+++|+|+.|+|||||.+.++-
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 457999999999999999999876
No 454
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.28 E-value=0.088 Score=50.60 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=20.1
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 037627 201 VISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~ 221 (858)
+|+|.|+.|+||||+|+.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999986
No 455
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.28 E-value=0.089 Score=51.30 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=21.0
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|.|++|+||||+|+.++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 456
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.24 E-value=0.13 Score=49.47 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.9
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|+|+.|+|||||++.++-
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999976
No 457
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.22 E-value=0.097 Score=52.98 Aligned_cols=24 Identities=33% Similarity=0.264 Sum_probs=21.9
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..++++|.|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 357899999999999999999997
No 458
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.21 E-value=0.16 Score=50.11 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=21.1
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|+|+.|+|||||.+.++-
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45999999999999999999986
No 459
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.16 E-value=0.36 Score=52.13 Aligned_cols=92 Identities=22% Similarity=0.210 Sum_probs=49.1
Q ss_pred CcEEEEEEecCcchHHHHHH-HHhcCccccCCcc-eEEEEEeCCCC-CHHHHHHHHHHhcccccc---chhhhhccHH--
Q 037627 198 RRFVISVYGMGGLGKTTLAR-KLYHNNDVKNKFD-RCAWVSVSQDY-DTKDLLLRIIRSFKINVL---TRELEEMREE-- 269 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~-~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~-- 269 (858)
+...++|.|.+|+|||+||. .+++. . .-+ .++++-+++.. ...++...+...-..... ....++....
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~ 236 (502)
T 2qe7_A 161 RGQRELIIGDRQTGKTTIAIDTIINQ--K--GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLY 236 (502)
T ss_dssp TTCBCEEEECSSSCHHHHHHHHHHGG--G--SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHH
T ss_pred cCCEEEEECCCCCCchHHHHHHHHHh--h--cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHH
Confidence 34578999999999999964 66652 2 234 34666676543 344555555442111100 0000111111
Q ss_pred ---HHHHHHHHHh--cCceEEEEEEcCCC
Q 037627 270 ---DLERYLHNCL--QGKSYLVVVDDAWQ 293 (858)
Q Consensus 270 ---~~~~~l~~~l--~~~~~LlvlDd~~~ 293 (858)
...-.+.+++ .++.+||++||+..
T Consensus 237 ~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 237 LAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 1112233333 58899999999853
No 460
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.13 E-value=0.25 Score=47.05 Aligned_cols=111 Identities=10% Similarity=0.074 Sum_probs=51.4
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLHN 277 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 277 (858)
...+..++|..|.||||.+...+.+ ....-..++.+..... .+..-..+...++.......... .+ .+.+
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r--~~~~g~kVli~k~~~d--~R~ge~~i~s~~g~~~~a~~~~~--~~----~~~~ 96 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRR--TQFAKQHAIVFKPCID--NRYSEEDVVSHNGLKVKAVPVSA--SK----DIFK 96 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEECC-------------------CCEEECSS--GG----GGGG
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEeccC--CcchHHHHHhhcCCeeEEeecCC--HH----HHHH
Confidence 3578999999999999999888873 3222223333332211 11111233333332211000000 01 1122
Q ss_pred HhcCceEEEEEEcCCC--hhhHHHHHhhCCCCCCCcEEEEEeCchh
Q 037627 278 CLQGKSYLVVVDDAWQ--KETWESLKRAFPDNKNGSRVIITTRIKE 321 (858)
Q Consensus 278 ~l~~~~~LlvlDd~~~--~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 321 (858)
.+.++--+|++|++.- .+.++.+....+ .|..||+|.++.+
T Consensus 97 ~~~~~~dvViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 97 HITEEMDVIAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLDQD 139 (214)
T ss_dssp GCCSSCCEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECSBC
T ss_pred HHhcCCCEEEEECcccCCHHHHHHHHHHhh---CCCEEEEEecccc
Confidence 2223334999999863 344544433222 2678999999543
No 461
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.13 E-value=0.097 Score=50.66 Aligned_cols=21 Identities=29% Similarity=0.240 Sum_probs=19.4
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 037627 201 VISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 462
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.13 E-value=0.08 Score=52.42 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=21.0
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+|+|+|+.|+||||+++.++.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999999986
No 463
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.09 E-value=0.16 Score=50.95 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=21.3
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|+|+.|+|||||++.++.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 45999999999999999999986
No 464
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.07 E-value=0.12 Score=51.14 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=21.5
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+++|+|+.|+|||||++.++-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 356999999999999999999875
No 465
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.06 E-value=0.17 Score=50.73 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=21.0
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|+|+.|+|||||++.++-
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45999999999999999999975
No 466
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.04 E-value=0.54 Score=44.86 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=20.6
Q ss_pred EEEEEEecCcchHHHHHHHHhcC
Q 037627 200 FVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
+.|+|-|..|+||||+++.+++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~ 25 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHR 25 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHH
Confidence 57899999999999999999873
No 467
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.04 E-value=0.1 Score=50.70 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=20.2
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 037627 200 FVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..|+|.|++|+||||+|+.++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 468
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.97 E-value=0.17 Score=50.48 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=21.1
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|+|+.|+|||||.+.++-
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45999999999999999999975
No 469
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.90 E-value=0.18 Score=51.51 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=21.5
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+++|+|+.|+|||||++.++.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 356999999999999999999975
No 470
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.90 E-value=0.099 Score=50.98 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=19.5
Q ss_pred EEEEEecCcchHHHHHHHHhc
Q 037627 201 VISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 471
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.86 E-value=0.17 Score=63.33 Aligned_cols=89 Identities=19% Similarity=0.275 Sum_probs=58.1
Q ss_pred CCcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhccccccchhhhh-ccHHHHHHHH
Q 037627 197 PRRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVLTRELEE-MREEDLERYL 275 (858)
Q Consensus 197 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~~~~~l 275 (858)
++.++|-|+|+.|+||||||.++.. ..+..=..++|++..+..++.- ++.++.....--... ..-++-...+
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 4568999999999999999999986 3444445789999988887753 667666543100000 1113333334
Q ss_pred HHHh-cCceEEEEEEcCC
Q 037627 276 HNCL-QGKSYLVVVDDAW 292 (858)
Q Consensus 276 ~~~l-~~~~~LlvlDd~~ 292 (858)
...+ .+..-+||+|-|.
T Consensus 1502 ~~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHHHTCCSEEEESCST
T ss_pred HHHHHcCCCCEEEEccHH
Confidence 4444 3556799999874
No 472
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.81 E-value=0.13 Score=51.42 Aligned_cols=111 Identities=19% Similarity=0.146 Sum_probs=57.9
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCC-CCCHHHHHHHHHHhccccccchhhhhccHHHHHHHHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQ-DYDTKDLLLRIIRSFKINVLTRELEEMREEDLERYLH 276 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 276 (858)
...+++|+|+.|+|||||++.+.. .....+.+.+++.-.. .+-.... ..+..+.. -..+. ..+...+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g--~~~~~~~G~I~~~g~~i~~~~~~~-----~~~v~q~~-~gl~~---~~l~~~la 92 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPIEYVFKHK-----KSIVNQRE-VGEDT---KSFADALR 92 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH--HHHHHCCCEEEEEESSCCSCCCCS-----SSEEEEEE-BTTTB---SCHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH--hCCCCCCCEEEEcCCcceeecCCc-----ceeeeHHH-hCCCH---HHHHHHHH
Confidence 457999999999999999999886 2222112333332211 0000000 00000000 00000 12244566
Q ss_pred HHhcCceEEEEEEcCCChhhHHHHHhhCCCCCCCcEEEEEeCchhH
Q 037627 277 NCLQGKSYLVVVDDAWQKETWESLKRAFPDNKNGSRVIITTRIKEV 322 (858)
Q Consensus 277 ~~l~~~~~LlvlDd~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~~ 322 (858)
+.+..++=+|++|+..+.+....+.... ..|.-|++||.....
T Consensus 93 ~aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 93 AALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred HHHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 6666677789999997665544443332 235568888876543
No 473
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.78 E-value=0.11 Score=48.21 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=21.2
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.++++|+|..|+|||||+..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 474
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.76 E-value=0.2 Score=48.22 Aligned_cols=107 Identities=21% Similarity=0.284 Sum_probs=54.7
Q ss_pred EEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHHHHhcccccc------chhhhhccHHHHHH
Q 037627 200 FVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRIIRSFKINVL------TRELEEMREEDLER 273 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~~~~ 273 (858)
-.|.+.|.||+||||+|..++.... +..+ .+..+.+....+... ..++..+..... .....+.+.+.+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~-~~G~-~V~v~d~D~q~~~~~--~al~~gl~~~~~~~~~~~~~~~~e~~l~~~-- 80 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQL-RQGV-RVMAGVVETHGRAET--EALLNGLPQQPLLRTEYRGMTLEEMDLDAL-- 80 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH-HTTC-CEEEEECCCTTCHHH--HHHHTTSCBCCCEEEEETTEEEEECCHHHH--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH-HCCC-CEEEEEeCCCCChhH--HHHhcCccccCcceeecCCcccccccHHHH--
Confidence 3588899999999999988887322 2223 355555544333321 122222221100 000111222221
Q ss_pred HHHHHhcCceEEEEEEcCCCh--------hhHHHHHhhCCCCCCCcEEEEEeCch
Q 037627 274 YLHNCLQGKSYLVVVDDAWQK--------ETWESLKRAFPDNKNGSRVIITTRIK 320 (858)
Q Consensus 274 ~l~~~l~~~~~LlvlDd~~~~--------~~~~~l~~~l~~~~~gs~ilvTtR~~ 320 (858)
+..+.=++|+|++-.. .-|+.+...++ .|.-++.|+.-+
T Consensus 81 -----L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~---sgidVitT~Nlq 127 (228)
T 2r8r_A 81 -----LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA---AGIDVYTTVNVQ 127 (228)
T ss_dssp -----HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH---TTCEEEEEEEGG
T ss_pred -----HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc---CCCCEEEEcccc
Confidence 2224569999986432 24666655333 255588777644
No 475
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.66 E-value=0.17 Score=51.47 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=22.2
Q ss_pred CCcEEEEEEecCcchHHHHHHHHhc
Q 037627 197 PRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 197 ~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
+...+++|+|+.|+|||||++.+..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 3456999999999999999999986
No 476
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=90.66 E-value=0.62 Score=50.17 Aligned_cols=99 Identities=16% Similarity=0.281 Sum_probs=53.0
Q ss_pred HHHHHhcCCCCcEEEEEEecCcchHHHHH-HHHhcCccccCCcc-eEEEEEeCCCC-CHHHHHHHHHHhccccc------
Q 037627 188 LLAKLLNKEPRRFVISVYGMGGLGKTTLA-RKLYHNNDVKNKFD-RCAWVSVSQDY-DTKDLLLRIIRSFKINV------ 258 (858)
Q Consensus 188 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa-~~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------ 258 (858)
.++.|..- .+...++|.|..|+|||+|| ..+.+. + +-+ .++++-+++.. ...++...+...=....
T Consensus 152 aID~l~Pi-grGQR~~Ifg~~g~GKT~l~l~~I~n~---~-~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~a 226 (513)
T 3oaa_A 152 AVDSMIPI-GRGQRELIIGDRQTGKTALAIDAIINQ---R-DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVA 226 (513)
T ss_dssp HHHHHSCC-BTTCBCEEEESSSSSHHHHHHHHHHTT---S-SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEE
T ss_pred eecccccc-ccCCEEEeecCCCCCcchHHHHHHHhh---c-cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEE
Confidence 44444322 23457899999999999996 466652 2 223 35777777653 34455555443211110
Q ss_pred ---cchhhhh---ccHHHHHHHHHHHhcCceEEEEEEcCCC
Q 037627 259 ---LTRELEE---MREEDLERYLHNCLQGKSYLVVVDDAWQ 293 (858)
Q Consensus 259 ---~~~~~~~---~~~~~~~~~l~~~l~~~~~LlvlDd~~~ 293 (858)
.+..... ...-.+.+.++. +++.+||++||+..
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsltr 265 (513)
T 3oaa_A 227 TASESAALQYLAPYAGCAMGEYFRD--RGEDALIIYDDLSK 265 (513)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEETHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHh--cCCCEEEEecChHH
Confidence 0000000 001123344443 58999999999854
No 477
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.61 E-value=0.12 Score=53.23 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=20.5
Q ss_pred EEEEEEecCcchHHHHHHHHhc
Q 037627 200 FVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 478
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.59 E-value=0.12 Score=50.89 Aligned_cols=23 Identities=35% Similarity=0.317 Sum_probs=20.9
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...|+|.|++|+||||+|+.++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 479
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.54 E-value=0.12 Score=51.56 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=21.2
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|+|+.|+|||||++.++.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45999999999999999999976
No 480
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.52 E-value=0.11 Score=55.91 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=22.0
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+|.|+|++|+||||+|+.++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 481
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=90.48 E-value=0.37 Score=54.41 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.3
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+++|+|+.|+|||||++.+..
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCCEEEEECCCCChHHHHHHHHhc
Confidence 356999999999999999998875
No 482
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.47 E-value=0.13 Score=51.72 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=21.3
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|+|+.|+|||||++.++-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45999999999999999999987
No 483
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=90.46 E-value=0.12 Score=48.74 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=21.8
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcC
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
..++..++|..|.||||.+...+++
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r 31 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRR 31 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 3579999999999999999888874
No 484
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.41 E-value=0.066 Score=54.55 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=18.6
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
+..+|+|.|..|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 485
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=90.36 E-value=0.94 Score=52.92 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=23.9
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEecCcchHHHHHHHHhc
Q 037627 184 DVSKLLAKLLNKEPRRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 184 ~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+.+...+..+ .++.|+|+.|.||||++..+..
T Consensus 98 q~~~i~~~l~~~----~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 98 QRDEFLKLYQNN----QIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp GHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhCC----CeEEEECCCCCCHHHHHHHHHH
Confidence 344555555443 3899999999999996666543
No 486
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.34 E-value=0.16 Score=46.70 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.8
Q ss_pred EEEEEEecCcchHHHHHHHHhcC
Q 037627 200 FVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 200 ~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999864
No 487
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=90.33 E-value=0.33 Score=52.52 Aligned_cols=91 Identities=15% Similarity=0.222 Sum_probs=49.1
Q ss_pred CcEEEEEEecCcchHHHHH-HHHhcCccccCCcc-eEEEEEeCCCC-CHHHHHHHHHHhccccc--------cchhhhhc
Q 037627 198 RRFVISVYGMGGLGKTTLA-RKLYHNNDVKNKFD-RCAWVSVSQDY-DTKDLLLRIIRSFKINV--------LTRELEEM 266 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa-~~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~--------~~~~~~~~ 266 (858)
+...++|.|.+|+|||+|| ..+++. .. -+ .++++-+++.. ...++.+.+...=.... ........
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~--~~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~ 237 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQ--QG--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQY 237 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTC--CT--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTT
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHh--hc--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHH
Confidence 4567899999999999996 466663 22 33 35667676543 23333444332110000 00000011
Q ss_pred ----cHHHHHHHHHHHhcCceEEEEEEcCCCh
Q 037627 267 ----REEDLERYLHNCLQGKSYLVVVDDAWQK 294 (858)
Q Consensus 267 ----~~~~~~~~l~~~l~~~~~LlvlDd~~~~ 294 (858)
..-.+.+.++. .++.+||++||+...
T Consensus 238 ~a~~~a~tiAEyfrd--~G~dVLli~Dsltr~ 267 (507)
T 1fx0_A 238 LAPYTGAALAEYFMY--RERHTLIIYDDLSKQ 267 (507)
T ss_dssp HHHHHHHHHHHHHHH--TTCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHH--cCCcEEEEEecHHHH
Confidence 11133444444 589999999998543
No 488
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.30 E-value=0.21 Score=50.38 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=21.2
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|+|+.|+|||||++.++-
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45999999999999999999986
No 489
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.29 E-value=0.14 Score=48.46 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=21.3
Q ss_pred cEEEEEEecCcchHHHHHHHHhcC
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
.-.++|+|..|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999864
No 490
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.25 E-value=0.19 Score=46.99 Aligned_cols=26 Identities=31% Similarity=0.463 Sum_probs=22.5
Q ss_pred CCcEEEEEEecCcchHHHHHHHHhcC
Q 037627 197 PRRFVISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 197 ~~~~vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
.....|+|+|.+|+|||||...+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999874
No 491
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.23 E-value=0.13 Score=48.37 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.9
Q ss_pred EEEEEecCcchHHHHHHHHhcC
Q 037627 201 VISVYGMGGLGKTTLARKLYHN 222 (858)
Q Consensus 201 vv~I~G~~GiGKTtLa~~~~~~ 222 (858)
-|+|+|.+|+|||||+..++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999873
No 492
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.22 E-value=0.13 Score=51.05 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=21.2
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|+|+.|+|||||++.++-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45999999999999999999986
No 493
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.18 E-value=0.15 Score=51.08 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.7
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...++.+.|.||+||||++..++.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
No 494
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=90.09 E-value=1.1 Score=53.05 Aligned_cols=122 Identities=15% Similarity=0.200 Sum_probs=64.4
Q ss_pred cEEEEEEecCcchHHHHHHHHhcCcccc-----CCcceEEEEEeCCC-------CCH-----------HHHHHHHHHhcc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYHNNDVK-----NKFDRCAWVSVSQD-------YDT-----------KDLLLRIIRSFK 255 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~-----~~f~~~~wv~~~~~-------~~~-----------~~~~~~i~~~l~ 255 (858)
..+++|+|+.|+|||||++.++.- .+. ... .+.++ .+. .+. ..-..+++..++
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~LagG-~i~g~~~~~~~-~~~~v--~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lg 536 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIANG-QVDGFPTQEEC-RTVYV--EHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFG 536 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHT-CSTTCCCTTTS-CEEET--TCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CcCCCccccce-eEEEE--cccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcC
Confidence 458999999999999999999731 111 001 12222 111 111 222344555555
Q ss_pred cccc--chhhhhccHH-HHHHHHHHHhcCceEEEEEEcCCCh---hhHHHHHhhCCCCCCCcEEEEEeCchhHHhhc
Q 037627 256 INVL--TRELEEMREE-DLERYLHNCLQGKSYLVVVDDAWQK---ETWESLKRAFPDNKNGSRVIITTRIKEVAERS 326 (858)
Q Consensus 256 ~~~~--~~~~~~~~~~-~~~~~l~~~l~~~~~LlvlDd~~~~---~~~~~l~~~l~~~~~gs~ilvTtR~~~~~~~~ 326 (858)
.... .......+-. ...-.+.+.+..++=+|+||+--.. .....+...+.. .|..||++|.+.......
T Consensus 537 L~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~ 611 (986)
T 2iw3_A 537 FTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNV 611 (986)
T ss_dssp CCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHH
T ss_pred CChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHh
Confidence 4210 1111222222 2333455566678889999997532 222333333333 356688888887665543
No 495
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.01 E-value=0.14 Score=50.71 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=21.1
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|+|+.|+|||||++.++-
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999986
No 496
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.97 E-value=0.23 Score=51.15 Aligned_cols=42 Identities=26% Similarity=0.332 Sum_probs=30.3
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCC
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDY 241 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 241 (858)
..++|+|+|-||+||||+|..++.. ....=..++-|++....
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~~~ 81 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDPKH 81 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESSSC
T ss_pred CceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCCCC
Confidence 4688999999999999999988863 32222357777776443
No 497
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=89.90 E-value=0.38 Score=54.62 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.5
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+++|+|+.|+|||||++.++.
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 356999999999999999999975
No 498
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.84 E-value=0.11 Score=51.60 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=32.9
Q ss_pred CcEEEEEEecCcchHHHHHHHHhcCccccCCcceEEEEEeCCCCCHHHHHHHH
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYHNNDVKNKFDRCAWVSVSQDYDTKDLLLRI 250 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 250 (858)
...++.|.|.+|+|||++|.+++.+ .....-..+++++... +...+...+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~-~~~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK-GAEEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH-HHHHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH-HHHhcCCCceeecccC--CHHHHHHHH
Confidence 4569999999999999999998752 1122223567777654 344444443
No 499
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.82 E-value=0.71 Score=52.17 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.4
Q ss_pred CcEEEEEEecCcchHHHHHHHHhc
Q 037627 198 RRFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 198 ~~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
...+++|+|+.|+|||||++.+..
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 356999999999999999998875
No 500
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.81 E-value=0.15 Score=50.75 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=21.1
Q ss_pred cEEEEEEecCcchHHHHHHHHhc
Q 037627 199 RFVISVYGMGGLGKTTLARKLYH 221 (858)
Q Consensus 199 ~~vv~I~G~~GiGKTtLa~~~~~ 221 (858)
..+++|+|+.|+|||||.+.++.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999986
Done!