Query 037628
Match_columns 166
No_of_seqs 207 out of 816
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 02:53:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037628.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037628hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04928 ACT_TyrKc Uncharacteri 99.7 8.3E-17 1.8E-21 111.3 8.1 55 92-146 2-56 (68)
2 PRK03059 PII uridylyl-transfer 99.6 9.2E-16 2E-20 147.3 9.2 98 2-143 633-730 (856)
3 PRK04374 PII uridylyl-transfer 99.6 2.6E-15 5.7E-20 144.4 11.7 98 2-143 645-742 (869)
4 cd04900 ACT_UUR-like_1 ACT dom 99.6 1.7E-15 3.7E-20 104.3 7.0 55 91-145 1-55 (73)
5 PRK00275 glnD PII uridylyl-tra 99.6 2E-15 4.4E-20 145.5 9.9 103 2-145 656-758 (895)
6 PRK05092 PII uridylyl-transfer 99.6 1.1E-14 2.3E-19 140.9 10.4 99 2-143 686-784 (931)
7 TIGR01693 UTase_glnD [Protein- 99.5 2.1E-14 4.5E-19 137.5 10.5 99 2-144 623-721 (850)
8 PRK05007 PII uridylyl-transfer 99.5 5.3E-14 1.1E-18 135.6 12.4 98 2-144 657-754 (884)
9 PRK01759 glnD PII uridylyl-tra 99.5 4.9E-14 1.1E-18 135.4 11.5 97 2-144 634-730 (854)
10 cd04927 ACT_ACR-like_2 Second 99.5 7.8E-14 1.7E-18 97.4 7.0 52 93-144 2-53 (76)
11 cd04925 ACT_ACR_2 ACT domain-c 99.4 3.7E-13 8.1E-18 93.2 6.6 50 92-142 1-50 (74)
12 COG2844 GlnD UTP:GlnB (protein 99.4 2.5E-12 5.4E-17 122.1 9.7 99 4-147 642-740 (867)
13 cd04895 ACT_ACR_1 ACT domain-c 99.3 1.2E-11 2.6E-16 86.4 6.8 57 92-149 2-58 (72)
14 cd04926 ACT_ACR_4 C-terminal 99.2 2.1E-11 4.6E-16 83.9 6.6 53 91-144 1-53 (72)
15 COG0788 PurU Formyltetrahydrof 99.2 6.4E-12 1.4E-16 106.8 4.6 73 90-162 6-85 (287)
16 cd04897 ACT_ACR_3 ACT domain-c 99.2 2.8E-11 6.1E-16 85.2 6.5 60 91-151 1-60 (75)
17 cd04893 ACT_GcvR_1 ACT domains 99.1 1.5E-10 3.3E-15 80.6 5.6 72 92-163 2-76 (77)
18 PRK03381 PII uridylyl-transfer 99.1 2.1E-10 4.6E-15 109.5 7.0 54 89-143 597-650 (774)
19 cd04896 ACT_ACR-like_3 ACT dom 99.0 8.4E-10 1.8E-14 77.7 6.0 53 92-145 1-54 (75)
20 PRK00275 glnD PII uridylyl-tra 99.0 7.4E-10 1.6E-14 107.3 7.7 59 87-146 810-868 (895)
21 cd04872 ACT_1ZPV ACT domain pr 98.9 4.8E-10 1E-14 79.5 2.7 72 92-163 2-78 (88)
22 cd04899 ACT_ACR-UUR-like_2 C-t 98.9 3.9E-09 8.3E-14 70.7 6.4 53 92-145 1-53 (70)
23 cd04875 ACT_F4HF-DF N-terminal 98.9 9.5E-10 2.1E-14 75.4 3.0 67 93-159 1-74 (74)
24 PRK04374 PII uridylyl-transfer 98.9 3.5E-09 7.5E-14 102.5 7.7 58 87-145 792-849 (869)
25 TIGR00655 PurU formyltetrahydr 98.9 2.2E-09 4.7E-14 91.9 5.4 70 93-162 2-79 (280)
26 PRK03059 PII uridylyl-transfer 98.9 7.1E-09 1.5E-13 100.1 8.6 55 87-142 782-836 (856)
27 PRK13010 purU formyltetrahydro 98.8 2.4E-09 5.2E-14 92.0 4.3 74 89-162 7-88 (289)
28 PRK03381 PII uridylyl-transfer 98.8 1.1E-08 2.3E-13 98.0 8.9 56 89-145 705-760 (774)
29 cd04869 ACT_GcvR_2 ACT domains 98.8 9.3E-09 2E-13 70.9 4.5 68 94-161 2-79 (81)
30 cd04873 ACT_UUR-ACR-like ACT d 98.8 2.9E-08 6.3E-13 65.7 6.4 51 93-144 2-52 (70)
31 PRK00194 hypothetical protein; 98.7 1.9E-08 4.1E-13 71.2 4.4 71 91-162 3-79 (90)
32 PF01842 ACT: ACT domain; Int 98.7 1.2E-07 2.7E-12 62.0 7.4 39 92-130 1-39 (66)
33 PRK05092 PII uridylyl-transfer 98.6 1E-07 2.2E-12 92.8 7.8 59 87-146 839-897 (931)
34 PRK01759 glnD PII uridylyl-tra 98.5 3E-07 6.5E-12 89.0 7.0 60 87-147 779-838 (854)
35 PRK05007 PII uridylyl-transfer 98.5 3.4E-07 7.3E-12 88.9 7.0 60 87-147 804-863 (884)
36 cd04870 ACT_PSP_1 CT domains f 98.4 4E-07 8.6E-12 62.7 4.5 66 94-160 2-72 (75)
37 PRK13011 formyltetrahydrofolat 98.4 6.7E-07 1.4E-11 76.8 6.0 71 91-162 7-84 (286)
38 PF13740 ACT_6: ACT domain; PD 98.4 1.7E-06 3.7E-11 59.9 6.7 49 91-140 2-50 (76)
39 PRK06027 purU formyltetrahydro 98.1 3.2E-06 7E-11 72.5 5.0 71 91-161 6-83 (286)
40 TIGR01693 UTase_glnD [Protein- 98.1 9.4E-06 2E-10 78.4 8.6 58 87-145 775-832 (850)
41 PRK11589 gcvR glycine cleavage 98.0 9.7E-06 2.1E-10 66.0 5.0 52 89-141 6-57 (190)
42 COG2844 GlnD UTP:GlnB (protein 97.9 2.6E-05 5.7E-10 75.1 7.2 54 90-144 790-843 (867)
43 PF13291 ACT_4: ACT domain; PD 97.9 6.4E-05 1.4E-09 51.8 7.3 48 91-138 6-54 (80)
44 cd04889 ACT_PDH-BS-like C-term 97.8 0.00013 2.8E-09 47.0 6.9 47 94-140 1-47 (56)
45 cd04887 ACT_MalLac-Enz ACT_Mal 97.7 0.00028 6.1E-09 47.4 7.6 45 94-138 2-46 (74)
46 PRK11589 gcvR glycine cleavage 97.7 8E-05 1.7E-09 60.7 5.6 73 91-163 95-177 (190)
47 cd04908 ACT_Bt0572_1 N-termina 97.6 0.0003 6.5E-09 46.9 6.9 39 92-130 2-40 (66)
48 cd04883 ACT_AcuB C-terminal AC 97.6 0.00016 3.5E-09 48.3 5.4 49 92-140 2-51 (72)
49 cd04886 ACT_ThrD-II-like C-ter 97.5 0.00046 9.9E-09 45.0 6.8 45 94-138 1-49 (73)
50 COG3830 ACT domain-containing 97.5 0.00015 3.3E-09 52.7 4.4 47 92-139 4-50 (90)
51 cd04874 ACT_Af1403 N-terminal 97.5 0.0008 1.7E-08 43.9 7.5 49 93-141 2-50 (72)
52 cd04879 ACT_3PGDH-like ACT_3PG 97.5 0.00074 1.6E-08 43.6 7.0 47 94-140 2-49 (71)
53 cd04909 ACT_PDH-BS C-terminal 97.4 0.0012 2.7E-08 43.8 7.3 48 92-139 2-50 (69)
54 cd04902 ACT_3PGDH-xct C-termin 97.4 0.00081 1.8E-08 44.6 6.3 48 94-141 2-50 (73)
55 cd04903 ACT_LSD C-terminal ACT 97.3 0.0015 3.3E-08 42.3 7.2 48 94-141 2-50 (71)
56 cd04878 ACT_AHAS N-terminal AC 97.3 0.0018 3.9E-08 42.0 7.3 49 92-140 1-50 (72)
57 cd04882 ACT_Bt0572_2 C-termina 97.3 0.0012 2.6E-08 42.8 6.3 47 94-140 2-49 (65)
58 PLN02828 formyltetrahydrofolat 97.2 8.6E-05 1.9E-09 63.5 0.4 55 108-162 1-65 (268)
59 cd04888 ACT_PheB-BS C-terminal 97.2 0.002 4.3E-08 43.2 7.1 48 93-140 2-49 (76)
60 cd02116 ACT ACT domains are co 97.2 0.0027 5.9E-08 37.5 6.7 35 94-128 1-35 (60)
61 TIGR00119 acolac_sm acetolacta 97.1 0.0026 5.6E-08 50.5 8.0 49 92-140 2-51 (157)
62 cd04894 ACT_ACR-like_1 ACT dom 97.1 0.0013 2.9E-08 45.2 5.2 48 92-141 1-49 (69)
63 cd04877 ACT_TyrR N-terminal AC 97.1 0.0027 5.8E-08 43.3 6.7 35 93-127 2-36 (74)
64 cd04884 ACT_CBS C-terminal ACT 97.0 0.0011 2.5E-08 44.6 4.5 34 94-127 2-35 (72)
65 PRK11895 ilvH acetolactate syn 97.0 0.0038 8.2E-08 49.8 8.0 49 92-140 3-52 (161)
66 cd04901 ACT_3PGDH C-terminal A 97.0 0.00079 1.7E-08 44.4 3.3 47 94-141 2-48 (69)
67 cd04881 ACT_HSDH-Hom ACT_HSDH_ 97.0 0.0053 1.2E-07 40.4 7.1 46 94-139 3-49 (79)
68 PRK06737 acetolactate synthase 96.9 0.005 1.1E-07 43.4 6.7 48 92-139 3-51 (76)
69 PRK11152 ilvM acetolactate syn 96.9 0.0062 1.3E-07 42.9 7.1 48 92-139 4-52 (76)
70 cd04905 ACT_CM-PDT C-terminal 96.9 0.0076 1.6E-07 41.5 7.5 39 92-130 2-40 (80)
71 cd04876 ACT_RelA-SpoT ACT dom 96.8 0.008 1.7E-07 37.4 6.8 46 94-139 1-46 (71)
72 PRK00227 glnD PII uridylyl-tra 96.8 0.0022 4.9E-08 61.3 5.7 50 92-143 547-597 (693)
73 PRK08577 hypothetical protein; 96.8 0.011 2.5E-07 45.0 8.6 52 89-140 54-108 (136)
74 PRK13562 acetolactate synthase 96.8 0.0055 1.2E-07 44.1 6.4 48 92-139 3-51 (84)
75 PRK08178 acetolactate synthase 96.8 0.0075 1.6E-07 44.4 7.2 50 90-139 7-57 (96)
76 CHL00100 ilvH acetohydroxyacid 96.7 0.0058 1.3E-07 49.3 7.0 49 92-140 3-52 (174)
77 PRK04435 hypothetical protein; 96.6 0.013 2.9E-07 45.6 8.1 52 89-140 67-118 (147)
78 COG1707 ACT domain-containing 96.4 0.008 1.7E-07 49.0 5.9 49 93-141 4-53 (218)
79 cd04871 ACT_PSP_2 ACT domains 96.1 0.0025 5.4E-08 45.1 1.2 69 93-161 1-82 (84)
80 COG2716 GcvR Glycine cleavage 95.9 0.0062 1.4E-07 49.2 2.9 51 89-140 3-53 (176)
81 cd04880 ACT_AAAH-PDT-like ACT 95.8 0.055 1.2E-06 36.6 6.9 36 94-129 2-37 (75)
82 PRK07334 threonine dehydratase 95.5 0.059 1.3E-06 48.0 7.8 50 91-140 326-381 (403)
83 TIGR00719 sda_beta L-serine de 95.4 0.087 1.9E-06 43.2 7.9 52 90-141 147-199 (208)
84 PF13710 ACT_5: ACT domain; PD 95.2 0.07 1.5E-06 35.8 5.5 41 100-140 1-42 (63)
85 COG4747 ACT domain-containing 95.1 0.076 1.7E-06 41.0 6.0 50 92-141 70-119 (142)
86 PRK10872 relA (p)ppGpp synthet 94.8 0.12 2.6E-06 50.1 7.9 50 91-140 666-718 (743)
87 PRK11092 bifunctional (p)ppGpp 94.3 0.18 3.9E-06 48.6 7.9 50 91-140 626-677 (702)
88 PRK11790 D-3-phosphoglycerate 94.2 0.082 1.8E-06 47.5 5.0 51 90-141 337-387 (409)
89 TIGR00691 spoT_relA (p)ppGpp s 93.9 0.24 5.2E-06 47.5 7.9 51 90-140 609-661 (683)
90 COG2716 GcvR Glycine cleavage 93.8 0.11 2.5E-06 42.0 4.7 36 88-123 89-124 (176)
91 PRK06545 prephenate dehydrogen 93.8 0.14 3E-06 44.9 5.6 42 89-130 288-329 (359)
92 cd04885 ACT_ThrD-I Tandem C-te 93.3 0.11 2.3E-06 34.8 3.2 29 95-124 2-30 (68)
93 PRK06382 threonine dehydratase 93.3 0.37 8.1E-06 43.0 7.6 53 89-141 328-384 (406)
94 COG2150 Predicted regulator of 93.2 0.17 3.7E-06 40.7 4.8 36 89-124 93-128 (167)
95 cd04931 ACT_PAH ACT domain of 93.1 0.69 1.5E-05 33.3 7.3 40 90-129 13-52 (90)
96 PRK08818 prephenate dehydrogen 92.9 0.47 1E-05 42.4 7.6 41 90-130 294-335 (370)
97 COG4747 ACT domain-containing 92.2 0.56 1.2E-05 36.3 6.1 49 92-141 4-52 (142)
98 PRK13581 D-3-phosphoglycerate 91.9 0.37 8.1E-06 44.6 5.9 52 90-141 451-503 (526)
99 cd04904 ACT_AAAH ACT domain of 91.7 0.72 1.6E-05 31.4 5.8 38 93-130 2-39 (74)
100 PF13840 ACT_7: ACT domain ; P 91.7 0.37 8.1E-06 32.2 4.3 34 90-123 5-42 (65)
101 COG0317 SpoT Guanosine polypho 90.8 0.85 1.8E-05 44.1 7.2 52 89-140 625-678 (701)
102 TIGR01327 PGDH D-3-phosphoglyc 90.7 0.45 9.7E-06 44.1 5.1 52 90-141 450-502 (525)
103 cd04929 ACT_TPH ACT domain of 90.4 1.4 3E-05 30.5 6.2 38 93-130 2-39 (74)
104 TIGR01127 ilvA_1Cterm threonin 90.1 1.3 2.9E-05 38.8 7.4 36 90-125 304-339 (380)
105 cd04930 ACT_TH ACT domain of t 89.6 1.5 3.2E-05 33.0 6.3 37 91-127 41-77 (115)
106 cd04891 ACT_AK-LysC-DapG-like_ 89.4 1.8 3.9E-05 26.6 5.8 43 98-140 8-50 (61)
107 COG0440 IlvH Acetolactate synt 89.0 1 2.2E-05 36.2 5.3 50 91-140 4-54 (163)
108 PRK08198 threonine dehydratase 88.9 1 2.2E-05 39.9 5.8 38 88-125 324-361 (404)
109 PF05088 Bac_GDH: Bacterial NA 87.8 3.7 8.1E-05 43.0 9.7 98 4-143 444-545 (1528)
110 cd04906 ACT_ThrD-I_1 First of 87.3 3.2 6.9E-05 28.9 6.5 46 93-140 3-50 (85)
111 PRK11899 prephenate dehydratas 87.2 2.7 5.9E-05 36.1 7.2 40 91-130 194-233 (279)
112 KOG2663 Acetolactate synthase, 86.6 0.74 1.6E-05 39.8 3.3 52 90-141 76-128 (309)
113 cd04913 ACT_AKii-LysC-BS-like_ 83.2 5 0.00011 25.7 5.5 42 98-140 9-51 (75)
114 COG0077 PheA Prephenate dehydr 82.8 4.8 0.0001 34.9 6.7 51 90-140 193-243 (279)
115 PRK06349 homoserine dehydrogen 80.5 6.2 0.00013 35.6 6.9 37 91-127 348-384 (426)
116 COG4492 PheB ACT domain-contai 80.4 7.5 0.00016 30.6 6.3 48 90-137 71-118 (150)
117 cd04932 ACT_AKiii-LysC-EC_1 AC 78.0 4.4 9.5E-05 27.8 4.0 25 98-122 11-35 (75)
118 PRK00227 glnD PII uridylyl-tra 78.0 2.4 5.1E-05 41.0 3.6 43 92-139 632-674 (693)
119 PRK10622 pheA bifunctional cho 77.2 10 0.00022 34.1 7.1 40 91-130 297-336 (386)
120 cd04868 ACT_AK-like ACT domain 75.7 13 0.00027 22.2 5.4 25 100-124 12-36 (60)
121 PRK08526 threonine dehydratase 75.2 5.9 0.00013 35.6 5.1 37 89-125 324-360 (403)
122 cd04937 ACT_AKi-DapG-BS_2 ACT 69.7 11 0.00025 24.4 4.3 22 99-120 12-33 (64)
123 cd04892 ACT_AK-like_2 ACT doma 67.2 26 0.00056 21.3 5.5 31 94-124 3-36 (65)
124 cd04922 ACT_AKi-HSDH-ThrA_2 AC 66.6 20 0.00043 22.6 4.9 26 99-124 12-37 (66)
125 PF04083 Abhydro_lipase: Parti 63.3 26 0.00057 23.4 5.2 32 110-142 3-34 (63)
126 TIGR01268 Phe4hydrox_tetr phen 62.4 39 0.00085 31.2 7.6 37 91-127 16-52 (436)
127 cd04935 ACT_AKiii-DAPDC_1 ACT 61.9 8.7 0.00019 26.3 2.7 25 98-122 11-35 (75)
128 cd04898 ACT_ACR-like_4 ACT dom 61.0 3.1 6.7E-05 29.5 0.3 44 94-137 3-47 (77)
129 cd04919 ACT_AK-Hom3_2 ACT doma 60.9 30 0.00065 21.9 5.0 26 99-124 12-37 (66)
130 PF05088 Bac_GDH: Bacterial NA 60.6 14 0.0003 39.0 4.9 33 89-121 15-47 (1528)
131 cd04933 ACT_AK1-AT_1 ACT domai 59.8 10 0.00022 26.5 2.7 25 98-122 11-35 (78)
132 cd04914 ACT_AKi-DapG-BS_1 ACT 58.0 21 0.00047 23.6 4.0 44 93-141 3-47 (67)
133 PRK10820 DNA-binding transcrip 56.7 17 0.00037 33.6 4.4 33 93-125 2-34 (520)
134 cd04936 ACT_AKii-LysC-BS-like_ 56.3 27 0.00059 21.5 4.1 26 98-123 10-35 (63)
135 cd04916 ACT_AKiii-YclM-BS_2 AC 55.8 49 0.0011 20.7 5.8 26 99-124 12-37 (66)
136 PRK11898 prephenate dehydratas 54.3 57 0.0012 27.9 7.0 40 90-129 195-235 (283)
137 cd04912 ACT_AKiii-LysC-EC-like 54.1 21 0.00047 23.9 3.6 24 98-121 11-34 (75)
138 COG3978 Acetolactate synthase 54.0 50 0.0011 23.8 5.4 51 91-141 3-54 (86)
139 cd04923 ACT_AK-LysC-DapG-like_ 54.0 25 0.00054 21.7 3.7 25 99-123 11-35 (63)
140 cd04890 ACT_AK-like_1 ACT doma 51.9 17 0.00036 23.1 2.6 24 99-122 11-34 (62)
141 TIGR01270 Trp_5_monoox tryptop 51.6 50 0.0011 30.7 6.5 40 88-127 28-67 (464)
142 cd04921 ACT_AKi-HSDH-ThrA-like 50.8 70 0.0015 21.0 5.9 27 98-124 11-37 (80)
143 PRK06635 aspartate kinase; Rev 49.2 29 0.00063 30.6 4.5 33 90-122 339-374 (404)
144 PLN02317 arogenate dehydratase 47.1 79 0.0017 28.7 6.9 36 91-126 283-318 (382)
145 cd04918 ACT_AK1-AT_2 ACT domai 44.1 77 0.0017 20.5 5.0 25 100-124 12-36 (65)
146 cd08343 ED_TypeI_classII_C C-t 43.8 39 0.00084 24.3 3.8 72 90-164 59-130 (131)
147 TIGR02079 THD1 threonine dehyd 43.6 1.3E+02 0.0029 26.9 7.9 37 89-125 323-359 (409)
148 PRK06635 aspartate kinase; Rev 43.4 59 0.0013 28.7 5.6 43 98-140 270-312 (404)
149 PRK08639 threonine dehydratase 42.9 57 0.0012 29.3 5.4 37 89-125 334-370 (420)
150 PF10719 ComFB: Late competenc 42.1 9.7 0.00021 26.6 0.3 13 3-15 38-50 (85)
151 PRK12483 threonine dehydratase 40.7 56 0.0012 30.6 5.2 35 89-125 343-377 (521)
152 cd04934 ACT_AK-Hom3_1 CT domai 40.2 29 0.00064 23.6 2.5 23 100-122 13-35 (73)
153 cd04924 ACT_AK-Arch_2 ACT doma 39.9 92 0.002 19.3 6.3 26 99-124 12-37 (66)
154 cd04915 ACT_AK-Ectoine_2 ACT d 39.3 75 0.0016 20.8 4.4 24 101-124 14-37 (66)
155 TIGR00656 asp_kin_monofn aspar 38.0 58 0.0013 28.7 4.6 33 89-121 335-370 (401)
156 PF08753 NikR_C: NikR C termin 37.4 1.4E+02 0.0029 20.6 7.8 51 91-141 2-52 (78)
157 TIGR00656 asp_kin_monofn aspar 36.5 1.3E+02 0.0027 26.5 6.5 35 90-124 259-296 (401)
158 PTZ00324 glutamate dehydrogena 36.3 1E+02 0.0022 31.4 6.4 68 92-159 231-304 (1002)
159 PLN02550 threonine dehydratase 32.2 65 0.0014 30.8 4.2 33 91-125 417-449 (591)
160 PRK09224 threonine dehydratase 32.1 92 0.002 28.8 5.1 34 90-125 327-360 (504)
161 PRK06291 aspartate kinase; Pro 31.0 1.8E+02 0.0039 26.5 6.7 35 90-124 320-357 (465)
162 cd07253 Glo_EDI_BRP_like_2 Thi 30.3 1.4E+02 0.0031 20.2 4.8 54 90-146 67-120 (125)
163 PRK08210 aspartate kinase I; R 29.6 1.3E+02 0.0028 26.7 5.4 35 90-124 270-305 (403)
164 KOG2972 Uncharacterized conser 29.0 1.2E+02 0.0025 26.4 4.8 29 94-124 207-235 (276)
165 TIGR00657 asp_kinases aspartat 29.0 1E+02 0.0023 27.6 4.8 35 89-123 376-413 (441)
166 COG3603 Uncharacterized conser 28.9 64 0.0014 24.9 2.9 29 98-126 73-101 (128)
167 PF02577 DNase-RNase: Bifuncti 26.8 2.3E+02 0.005 21.3 5.7 39 99-137 49-88 (135)
168 TIGR01124 ilvA_2Cterm threonin 26.6 1.3E+02 0.0029 27.9 5.1 35 89-125 323-357 (499)
169 COG2061 ACT-domain-containing 26.4 95 0.0021 25.1 3.6 32 91-122 5-36 (170)
170 cd04920 ACT_AKiii-DAPDC_2 ACT 25.5 84 0.0018 20.3 2.7 22 99-120 11-32 (63)
171 PRK08841 aspartate kinase; Val 25.2 1.2E+02 0.0027 27.1 4.6 33 89-121 316-348 (392)
172 PRK08210 aspartate kinase I; R 25.1 1.4E+02 0.003 26.4 4.9 32 90-121 338-372 (403)
173 PRK15385 magnesium transport p 24.6 3.1E+02 0.0066 23.1 6.5 38 91-128 142-181 (225)
174 PRK01002 nickel responsive reg 22.3 3.7E+02 0.008 20.7 7.4 52 91-143 58-110 (141)
175 PRK09034 aspartate kinase; Rev 21.3 1.4E+02 0.0029 27.3 4.1 33 90-122 307-342 (454)
176 PRK04460 nickel responsive reg 21.0 3.9E+02 0.0085 20.5 7.5 52 90-142 54-106 (137)
177 cd07261 Glo_EDI_BRP_like_11 Th 21.0 2.8E+02 0.006 18.8 5.5 51 89-144 58-108 (114)
178 PRK09034 aspartate kinase; Rev 20.1 3.9E+02 0.0084 24.3 6.8 36 89-124 383-421 (454)
No 1
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.70 E-value=8.3e-17 Score=111.33 Aligned_cols=55 Identities=64% Similarity=1.033 Sum_probs=52.5
Q ss_pred EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCCCC
Q 037628 92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEGS 146 (166)
Q Consensus 92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~~~ 146 (166)
++|+|+|+||||||+++|++|+.+|+||++|+++|+.||+++|+|+|.+++++++
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~~ 56 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGET 56 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccch
Confidence 6999999999999999999999999999999999999999999999999988654
No 2
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.62 E-value=9.2e-16 Score=147.30 Aligned_cols=98 Identities=23% Similarity=0.341 Sum_probs=82.5
Q ss_pred cccccCccccccCCCCchHhHHHHHHHHHHhCCCCCCCeeEEEEeeeecccCCCCCcccccccccccCCCCCCCCCCCcc
Q 037628 2 HFFHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENLCTRTDGNDDQLFVNSISTARPSLDADNEGIVP 81 (166)
Q Consensus 2 hf~rlP~rY~ldv~~~~aedVl~H~~lL~~a~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~ 81 (166)
++.+||++|++... +++|+.|.+++..+...+. |.+-+ .
T Consensus 633 ~~~~~~~~Yf~~~~---~~~I~~h~~~~~~~~~~~~-~~v~~---~---------------------------------- 671 (856)
T PRK03059 633 LWDQLDVGYFLRHD---AADIAWHTRHLYRHVDTDT-PIVRA---R---------------------------------- 671 (856)
T ss_pred HHHhCChHHhccCC---HHHHHHHHHHHHhcccCCC-CeEEE---E----------------------------------
Confidence 57899999999999 5999999999988754333 32223 1
Q ss_pred cccccCCCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCC
Q 037628 82 SQKRQELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPV 143 (166)
Q Consensus 82 ~~~~~~~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~ 143 (166)
..+..++++|+|+|+|+||||++|||+|+.+|+||++|+|+|+.||+++|+|+|.++.+
T Consensus 672 ---~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~ 730 (856)
T PRK03059 672 ---LSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEE 730 (856)
T ss_pred ---ecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCC
Confidence 12334789999999999999999999999999999999999999999999999987655
No 3
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.62 E-value=2.6e-15 Score=144.41 Aligned_cols=98 Identities=19% Similarity=0.129 Sum_probs=82.1
Q ss_pred cccccCccccccCCCCchHhHHHHHHHHHHhCCCCCCCeeEEEEeeeecccCCCCCcccccccccccCCCCCCCCCCCcc
Q 037628 2 HFFHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENLCTRTDGNDDQLFVNSISTARPSLDADNEGIVP 81 (166)
Q Consensus 2 hf~rlP~rY~ldv~~~~aedVl~H~~lL~~a~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~ 81 (166)
++++||++|++... +++|+.|.+++..+. +.. |.+-++.
T Consensus 645 ~~~~l~~~Y~~~~~---~~~I~~h~~~~~~~~-~~~-~~v~~~~------------------------------------ 683 (869)
T PRK04374 645 QFAGMPDENFLRFR---PEQLAWQAASLIEVE-IGQ-TLVKARR------------------------------------ 683 (869)
T ss_pred HHHhCCchhhcCCC---HHHHHHHHHHHHhcC-CCC-CeEEEee------------------------------------
Confidence 57899999999999 599999999998864 222 2222211
Q ss_pred cccccCCCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCC
Q 037628 82 SQKRQELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPV 143 (166)
Q Consensus 82 ~~~~~~~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~ 143 (166)
..+..++++|+|+|+|+||||++|||+|+.+|+||++|+|||+.||+++|+|+|.++++
T Consensus 684 ---~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~ 742 (869)
T PRK04374 684 ---AVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDT 742 (869)
T ss_pred ---eccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCC
Confidence 12335789999999999999999999999999999999999999999999999998766
No 4
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.61 E-value=1.7e-15 Score=104.27 Aligned_cols=55 Identities=42% Similarity=0.628 Sum_probs=50.8
Q ss_pred eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCCC
Q 037628 91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEG 145 (166)
Q Consensus 91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~~ 145 (166)
+++|+|+|+||||||+++|++|+.+|+||++|+|+|+.+|+++|+|+|.++++..
T Consensus 1 ~~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~ 55 (73)
T cd04900 1 GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEP 55 (73)
T ss_pred CEEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCC
Confidence 3789999999999999999999999999999999999899999999998876543
No 5
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.61 E-value=2e-15 Score=145.53 Aligned_cols=103 Identities=18% Similarity=0.292 Sum_probs=84.0
Q ss_pred cccccCccccccCCCCchHhHHHHHHHHHHhCCCCCCCeeEEEEeeeecccCCCCCcccccccccccCCCCCCCCCCCcc
Q 037628 2 HFFHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENLCTRTDGNDDQLFVNSISTARPSLDADNEGIVP 81 (166)
Q Consensus 2 hf~rlP~rY~ldv~~~~aedVl~H~~lL~~a~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~ 81 (166)
++.+||++|++..+ +++|.-|.+++..+..+.. |.+.++.-.
T Consensus 656 ~~~~~~~~Y~l~~~---~~~I~~h~~~~~~~~~~~~-~~v~~~~~~---------------------------------- 697 (895)
T PRK00275 656 LWSQLGDDYFLRHT---AGDIAWHTEAILQHPDDGG-PLVLIKETT---------------------------------- 697 (895)
T ss_pred HHHhCCcHHhcCCC---HHHHHHHHHHHHhcccCCC-CeEEEEecC----------------------------------
Confidence 57899999999999 5999999999988754444 333231100
Q ss_pred cccccCCCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCCC
Q 037628 82 SQKRQELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEG 145 (166)
Q Consensus 82 ~~~~~~~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~~ 145 (166)
.....++++|+|+|+|+||||++||++|+.+|+||++|+|+|+.+|+++|+|+|.++++..
T Consensus 698 ---~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~ 758 (895)
T PRK00275 698 ---QREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEP 758 (895)
T ss_pred ---ccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCC
Confidence 0112478999999999999999999999999999999999999999999999999877643
No 6
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.57 E-value=1.1e-14 Score=140.87 Aligned_cols=99 Identities=26% Similarity=0.353 Sum_probs=85.0
Q ss_pred cccccCccccccCCCCchHhHHHHHHHHHHhCCCCCCCeeEEEEeeeecccCCCCCcccccccccccCCCCCCCCCCCcc
Q 037628 2 HFFHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENLCTRTDGNDDQLFVNSISTARPSLDADNEGIVP 81 (166)
Q Consensus 2 hf~rlP~rY~ldv~~~~aedVl~H~~lL~~a~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~ 81 (166)
++.+||++|++..+ +++|+.|.+++....+....+++.++.
T Consensus 686 ~~~~~~~~yf~~~~---~~~i~~h~~~~~~~~~~~~~~~v~~~~------------------------------------ 726 (931)
T PRK05092 686 YLARHYPAYWLAVD---LDTQARHARFIRDADDAGRPLATEVRP------------------------------------ 726 (931)
T ss_pred HHHhCCcHHhcCCC---HHHHHHHHHHHHhccccCCCcEEEEEe------------------------------------
Confidence 57899999999999 599999999999886544556665511
Q ss_pred cccccCCCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCC
Q 037628 82 SQKRQELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPV 143 (166)
Q Consensus 82 ~~~~~~~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~ 143 (166)
....++++|+|+|+|+||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|.++++
T Consensus 727 ----~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g 784 (931)
T PRK05092 727 ----DPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFG 784 (931)
T ss_pred ----cCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCC
Confidence 1234689999999999999999999999999999999999999999999999977655
No 7
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.55 E-value=2.1e-14 Score=137.53 Aligned_cols=99 Identities=24% Similarity=0.297 Sum_probs=83.0
Q ss_pred cccccCccccccCCCCchHhHHHHHHHHHHhCCCCCCCeeEEEEeeeecccCCCCCcccccccccccCCCCCCCCCCCcc
Q 037628 2 HFFHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENLCTRTDGNDDQLFVNSISTARPSLDADNEGIVP 81 (166)
Q Consensus 2 hf~rlP~rY~ldv~~~~aedVl~H~~lL~~a~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~ 81 (166)
++.++|.+|++...+ ++|+.|.+++.++.+.++ |.+.+
T Consensus 623 ~~~~~~~~y~~~~~~---~~I~~h~~~~~~~~~~~~-~~v~~-------------------------------------- 660 (850)
T TIGR01693 623 LWLRAYDDYFLRFTH---KEIAWHAESLRRALSSGG-PLALI-------------------------------------- 660 (850)
T ss_pred HHHhCCchhhcCCCH---HHHHHHHHHHHhcccCCC-CEEEE--------------------------------------
Confidence 568899999999995 999999999998754333 33333
Q ss_pred cccccCCCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCC
Q 037628 82 SQKRQELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVE 144 (166)
Q Consensus 82 ~~~~~~~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~ 144 (166)
......++++|+|+|+||||||++|+++|+.+|+||++|+|+||.+|+++|+|+|.+.++.
T Consensus 661 --~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~ 721 (850)
T TIGR01693 661 --DGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGS 721 (850)
T ss_pred --eccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCC
Confidence 0011257899999999999999999999999999999999999999999999999887664
No 8
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.54 E-value=5.3e-14 Score=135.61 Aligned_cols=98 Identities=20% Similarity=0.293 Sum_probs=83.1
Q ss_pred cccccCccccccCCCCchHhHHHHHHHHHHhCCCCCCCeeEEEEeeeecccCCCCCcccccccccccCCCCCCCCCCCcc
Q 037628 2 HFFHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENLCTRTDGNDDQLFVNSISTARPSLDADNEGIVP 81 (166)
Q Consensus 2 hf~rlP~rY~ldv~~~~aedVl~H~~lL~~a~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~ 81 (166)
++..||++|++... +++|+.|.+++..+.. ..|.+.+ .
T Consensus 657 ~~~~~~~~yf~~~~---~~~I~~h~~~~~~~~~--~~p~V~i---~---------------------------------- 694 (884)
T PRK05007 657 IWSRCRADYFLRHT---PNQLAWHARHLLQHDL--DKPLVLL---S---------------------------------- 694 (884)
T ss_pred HHHhCChHHhcCCC---HHHHHHHHHHHHhccC--CCCeEEE---E----------------------------------
Confidence 57899999999999 5999999999988643 2244433 1
Q ss_pred cccccCCCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCC
Q 037628 82 SQKRQELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVE 144 (166)
Q Consensus 82 ~~~~~~~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~ 144 (166)
.....++++|+|+|+|+||||++||++|+.+|+||++|+|+|+.+|+++|+|+|.+.++.
T Consensus 695 ---~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~ 754 (884)
T PRK05007 695 ---KQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGS 754 (884)
T ss_pred ---ecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCC
Confidence 123357899999999999999999999999999999999999999999999999887664
No 9
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.53 E-value=4.9e-14 Score=135.43 Aligned_cols=97 Identities=20% Similarity=0.246 Sum_probs=82.1
Q ss_pred cccccCccccccCCCCchHhHHHHHHHHHHhCCCCCCCeeEEEEeeeecccCCCCCcccccccccccCCCCCCCCCCCcc
Q 037628 2 HFFHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENLCTRTDGNDDQLFVNSISTARPSLDADNEGIVP 81 (166)
Q Consensus 2 hf~rlP~rY~ldv~~~~aedVl~H~~lL~~a~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~ 81 (166)
++.+||.+|.+... +++|+.|.+++..... .|.+.+ .
T Consensus 634 ~~~~~~~~yf~~~~---~~~I~~h~~~~~~~~~---~~~V~i---~---------------------------------- 670 (854)
T PRK01759 634 LWQRCPEDYFLRNT---PKQIAWHALLLLDFRG---DLLVKI---S---------------------------------- 670 (854)
T ss_pred HHHhCCcHHhcCCC---HHHHHHHHHHHHhcCC---CCEEEE---E----------------------------------
Confidence 57889999999998 5999999999977642 233333 1
Q ss_pred cccccCCCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCC
Q 037628 82 SQKRQELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVE 144 (166)
Q Consensus 82 ~~~~~~~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~ 144 (166)
.....++++|+|+|+||||||++||++|+.+|+||++|+|+|+.+|+++|+|+|.+.++.
T Consensus 671 ---~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~ 730 (854)
T PRK01759 671 ---NRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGK 730 (854)
T ss_pred ---ecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCC
Confidence 123457899999999999999999999999999999999999999999999999887664
No 10
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.49 E-value=7.8e-14 Score=97.38 Aligned_cols=52 Identities=25% Similarity=0.361 Sum_probs=48.6
Q ss_pred EEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCC
Q 037628 93 EVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVE 144 (166)
Q Consensus 93 eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~ 144 (166)
.+.|+|+||||||++++++|+++|+||++|+|+||.+|+++|+|+|.++.+.
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~ 53 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL 53 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC
Confidence 5789999999999999999999999999999999999999999999887653
No 11
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.43 E-value=3.7e-13 Score=93.20 Aligned_cols=50 Identities=28% Similarity=0.405 Sum_probs=46.3
Q ss_pred EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCC
Q 037628 92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWP 142 (166)
Q Consensus 92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~ 142 (166)
+.|.|+++||||||++||++|+++||||++|++++. +|+++|+|+|.+++
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~-~~~~~d~f~V~d~~ 50 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH-NGRLACVIYVRDEE 50 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE-CCEEEEEEEEEcCc
Confidence 468999999999999999999999999999999965 88999999998765
No 12
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=2.5e-12 Score=122.13 Aligned_cols=99 Identities=30% Similarity=0.347 Sum_probs=83.0
Q ss_pred cccCccccccCCCCchHhHHHHHHHHHHhCCCCCCCeeEEEEeeeecccCCCCCcccccccccccCCCCCCCCCCCcccc
Q 037628 4 FHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENLCTRTDGNDDQLFVNSISTARPSLDADNEGIVPSQ 83 (166)
Q Consensus 4 ~rlP~rY~ldv~~~~aedVl~H~~lL~~a~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~ 83 (166)
.+++..|.+-+. +.||.-|-+.|.+. +..+ |.+..+
T Consensus 642 ~~~~~~yflr~~---~~~iawH~~~l~~~-~~~~-~Lv~~~--------------------------------------- 677 (867)
T COG2844 642 ARCYANYFLRHS---ARDIAWHARHLVRH-DLGK-PLVLIS--------------------------------------- 677 (867)
T ss_pred HhccccceeecC---HHHHhHHHHHHHhh-hccC-cceeee---------------------------------------
Confidence 478999999999 59999999999998 4333 333320
Q ss_pred cccCCCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCCCCC
Q 037628 84 KRQELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEGSV 147 (166)
Q Consensus 84 ~~~~~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~~~~ 147 (166)
.....+++||+|+|+|+|.||+.++++++..|+||++|+|||+.||+++|+|.|.++.+...+
T Consensus 678 -~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~ 740 (867)
T COG2844 678 -VRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVE 740 (867)
T ss_pred -ecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccc
Confidence 112237899999999999999999999999999999999999999999999999988775555
No 13
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.28 E-value=1.2e-11 Score=86.40 Aligned_cols=57 Identities=26% Similarity=0.332 Sum_probs=50.1
Q ss_pred EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCCCCCCC
Q 037628 92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEGSVLS 149 (166)
Q Consensus 92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~~~~f~ 149 (166)
+.|.|.++|||||+++|+.+|+.+|++|..|+| +|..+.+.|+|+|.+.++.+...+
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkI-sT~Gerv~DvFyV~d~~g~kl~d~ 58 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYI-SSDGGWFMDVFHVTDQLGNKLTDD 58 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEE-eecCCeEEEEEEEECCCCCCCCCH
Confidence 678999999999999999999999999999999 456779999999998877554433
No 14
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.24 E-value=2.1e-11 Score=83.88 Aligned_cols=53 Identities=21% Similarity=0.303 Sum_probs=47.6
Q ss_pred eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCC
Q 037628 91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVE 144 (166)
Q Consensus 91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~ 144 (166)
+++|+|+++|+||+|++|+++|+++|+||++|+++++ +++.+++|+|.++++.
T Consensus 1 gtri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~-~~~~~d~f~v~~~~~~ 53 (72)
T cd04926 1 GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ-GDMAVNVFYVTDANGN 53 (72)
T ss_pred CeEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecC-CCeEEEEEEEECCCCC
Confidence 3689999999999999999999999999999999865 6799999999886653
No 15
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=99.24 E-value=6.4e-12 Score=106.81 Aligned_cols=73 Identities=23% Similarity=0.446 Sum_probs=62.2
Q ss_pred CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCC-C-eEEEE-EEEcCC----CCCCCCCCccccceeeEEEEE
Q 037628 90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTD-G-YSLDV-FVVDGW----PVEGSVLSPNVADFAMLWSGY 162 (166)
Q Consensus 90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~d-g-~~ldv-F~V~~~----~~~~~~f~~~a~~f~m~~~~~ 162 (166)
...+++++|||++||+++||++|+.+|+||.++++|++.+ | |++++ |...+. +....+|++.+++|.|+|++.
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~f~m~~~~~ 85 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEEFGMDWRLH 85 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHHHHHhhCceeEEe
Confidence 4589999999999999999999999999999999997764 4 78888 887654 223556888999999999975
No 16
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.23 E-value=2.8e-11 Score=85.17 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=51.2
Q ss_pred eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCCCCCCCcc
Q 037628 91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEGSVLSPN 151 (166)
Q Consensus 91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~~~~f~~~ 151 (166)
++.|.|.|+|||||+++|+.+|+.+|++|..|+|- |..+.+.|+|+|.+..+.+...+..
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~-T~gera~D~FyV~d~~g~kl~~~~~ 60 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATID-TDGDDAHQEYYIRHKDGRTLSTEGE 60 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEe-ecCceEEEEEEEEcCCCCccCCHHH
Confidence 36899999999999999999999999999999995 4666999999999887765544433
No 17
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=99.10 E-value=1.5e-10 Score=80.63 Aligned_cols=72 Identities=15% Similarity=0.152 Sum_probs=55.3
Q ss_pred EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEE-EEEcCCCC--CCCCCCccccceeeEEEEEE
Q 037628 92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDV-FVVDGWPV--EGSVLSPNVADFAMLWSGYR 163 (166)
Q Consensus 92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldv-F~V~~~~~--~~~~f~~~a~~f~m~~~~~~ 163 (166)
..|++.||||||++++||++|+++|+||.+++++...+-|+++. |.+..... .+..+++.++++.++.++-|
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~~~~~~l~~~l~~~~~~~~l~i~v~~ 76 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSWDAIAKLEAALPGLARRLDLTLMMKR 76 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEeccccHHHHHHHHHHHHHHcCCEEEEEe
Confidence 57899999999999999999999999999999998444477776 66653211 23346667788887776643
No 18
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.07 E-value=2.1e-10 Score=109.50 Aligned_cols=54 Identities=31% Similarity=0.295 Sum_probs=51.2
Q ss_pred CCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCC
Q 037628 89 VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPV 143 (166)
Q Consensus 89 ~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~ 143 (166)
.++++|+|+|+||||||++||++|+.+|+||++|+|+| .+|+++++|+|.++.+
T Consensus 597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t-~dg~~ld~F~V~~~~~ 650 (774)
T PRK03381 597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS-HDGVAVLEFVVSPRFG 650 (774)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe-cCCEEEEEEEEECCCC
Confidence 68899999999999999999999999999999999997 9999999999998655
No 19
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.01 E-value=8.4e-10 Score=77.68 Aligned_cols=53 Identities=19% Similarity=0.169 Sum_probs=44.4
Q ss_pred EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEee-cCCCeEEEEEEEcCCCCCC
Q 037628 92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFS-TTDGYSLDVFVVDGWPVEG 145 (166)
Q Consensus 92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~t-t~dg~~ldvF~V~~~~~~~ 145 (166)
+.|.|.|+|||||+++|+.+|+.+|++|..|+|-+ |....+.|+|+| +..+..
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~k 54 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKK 54 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCc
Confidence 35789999999999999999999999999999952 455589999999 544433
No 20
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.00 E-value=7.4e-10 Score=107.31 Aligned_cols=59 Identities=17% Similarity=0.307 Sum_probs=53.2
Q ss_pred CCCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCCCC
Q 037628 87 ELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEGS 146 (166)
Q Consensus 87 ~~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~~~ 146 (166)
...++++|.|+|+||||||++||++|+.+|+||++|+|+|+ +|+++|+|+|.+.++...
T Consensus 810 ~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~-g~~v~D~F~V~d~~g~~l 868 (895)
T PRK00275 810 AQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATL-GERVEDVFFITDADNQPL 868 (895)
T ss_pred CCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEec-CCEEEEEEEEECCCCCCC
Confidence 34578999999999999999999999999999999999887 889999999998776543
No 21
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.94 E-value=4.8e-10 Score=79.48 Aligned_cols=72 Identities=8% Similarity=0.057 Sum_probs=55.2
Q ss_pred EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEE-EEEcCCCC----CCCCCCccccceeeEEEEEE
Q 037628 92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDV-FVVDGWPV----EGSVLSPNVADFAMLWSGYR 163 (166)
Q Consensus 92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldv-F~V~~~~~----~~~~f~~~a~~f~m~~~~~~ 163 (166)
+.|++.|+|+||++++||++|+++|+||.+.++++..+-+++.. +.+..... .+.++++.+++++|+|.+.+
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~l~~~i~~ 78 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISESNLDFAELQEELEELGKELGVKIRIQH 78 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCCEEEEEh
Confidence 57899999999999999999999999999999987433366654 55442011 23456677889999999864
No 22
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.92 E-value=3.9e-09 Score=70.65 Aligned_cols=53 Identities=26% Similarity=0.444 Sum_probs=46.6
Q ss_pred EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCCC
Q 037628 92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEG 145 (166)
Q Consensus 92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~~ 145 (166)
+.|.|.++|+||+|++|+++|+.+|+||.++++.+.. ++++++|++.+..+..
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~-~~~~~~f~i~~~~~~~ 53 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLG-ERAEDVFYVTDADGQP 53 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecC-CEEEEEEEEECCCCCc
Confidence 4689999999999999999999999999999998654 5899999998866543
No 23
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.90 E-value=9.5e-10 Score=75.37 Aligned_cols=67 Identities=28% Similarity=0.575 Sum_probs=49.0
Q ss_pred EEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC--eEEEE-EEEcCC----CCCCCCCCccccceeeEE
Q 037628 93 EVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG--YSLDV-FVVDGW----PVEGSVLSPNVADFAMLW 159 (166)
Q Consensus 93 eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg--~~ldv-F~V~~~----~~~~~~f~~~a~~f~m~~ 159 (166)
.|++.|+||||++++||++|+++|+||.+.+.++...+ +.+.+ +.+... ...+..+++.+++++|.|
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~ 74 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVAAEFDMDW 74 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCCcC
Confidence 37899999999999999999999999999999875444 44444 444321 112344566677777776
No 24
>PRK04374 PII uridylyl-transferase; Provisional
Probab=98.89 E-value=3.5e-09 Score=102.47 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=52.6
Q ss_pred CCCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCCC
Q 037628 87 ELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEG 145 (166)
Q Consensus 87 ~~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~~ 145 (166)
...+.++|.|+|+||||||++||++|+++|+||+.|+|+|. +|.++|+|+|.+.++..
T Consensus 792 ~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~-g~~a~D~F~V~d~~g~~ 849 (869)
T PRK04374 792 AGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF-GERAEDQFQITDEHDRP 849 (869)
T ss_pred CCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec-CCEEEEEEEEECCCCCc
Confidence 34578999999999999999999999999999999999886 88999999999877643
No 25
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=98.89 E-value=2.2e-09 Score=91.88 Aligned_cols=70 Identities=20% Similarity=0.393 Sum_probs=56.0
Q ss_pred EEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC-CC-eEEEE-EEEcCCCC----CCCCCCc-cccceeeEEEEE
Q 037628 93 EVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT-DG-YSLDV-FVVDGWPV----EGSVLSP-NVADFAMLWSGY 162 (166)
Q Consensus 93 eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~-dg-~~ldv-F~V~~~~~----~~~~f~~-~a~~f~m~~~~~ 162 (166)
.||+.|+|+||++|+||++|+++|+||.+.+++.+. .| |+|+. |.+.+... .+.++++ .++++.|+|++.
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~~~~~~~~l~i~l~ 79 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKSALAEKFEMTWELI 79 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhCCEEEEe
Confidence 689999999999999999999999999999999864 34 66665 66543111 2345777 899999999975
No 26
>PRK03059 PII uridylyl-transferase; Provisional
Probab=98.86 E-value=7.1e-09 Score=100.12 Aligned_cols=55 Identities=22% Similarity=0.301 Sum_probs=50.1
Q ss_pred CCCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCC
Q 037628 87 ELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWP 142 (166)
Q Consensus 87 ~~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~ 142 (166)
...+.++|.|+|+||||||++||++|+.+|+||+.|+|+|+ +|.++|+|+|.+.+
T Consensus 782 ~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~-~~~v~DvF~V~~~~ 836 (856)
T PRK03059 782 ERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTL-GERVEDTFLIDGSG 836 (856)
T ss_pred CCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeec-CCEEEEEEEEcCCC
Confidence 34578999999999999999999999999999999999986 88999999996554
No 27
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=98.84 E-value=2.4e-09 Score=92.03 Aligned_cols=74 Identities=19% Similarity=0.326 Sum_probs=57.8
Q ss_pred CCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEee--cCCCeEEEE-EEEcCCCC-----CCCCCCccccceeeEEE
Q 037628 89 VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFS--TTDGYSLDV-FVVDGWPV-----EGSVLSPNVADFAMLWS 160 (166)
Q Consensus 89 ~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~t--t~dg~~ldv-F~V~~~~~-----~~~~f~~~a~~f~m~~~ 160 (166)
...+.|++.|+|||||.|+||++|+++|+||.+.++++ ..+.|++.+ |....+.. .+.++++.++++.|.|+
T Consensus 7 m~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~~~l~l~~~ 86 (289)
T PRK13010 7 SPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQPVAEKFDMQWA 86 (289)
T ss_pred ccCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHhCCeEE
Confidence 34578999999999999999999999999999999984 334588877 55332221 23456778899999999
Q ss_pred EE
Q 037628 161 GY 162 (166)
Q Consensus 161 ~~ 162 (166)
+.
T Consensus 87 i~ 88 (289)
T PRK13010 87 IH 88 (289)
T ss_pred Ee
Confidence 75
No 28
>PRK03381 PII uridylyl-transferase; Provisional
Probab=98.84 E-value=1.1e-08 Score=98.00 Aligned_cols=56 Identities=27% Similarity=0.346 Sum_probs=51.3
Q ss_pred CCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCCC
Q 037628 89 VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEG 145 (166)
Q Consensus 89 ~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~~ 145 (166)
.+.++|+|+|+||||||++||++|+.+|+||+.|+|+|. +|.++|+|+|.+.++..
T Consensus 705 ~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~-g~~a~D~F~V~d~~g~~ 760 (774)
T PRK03381 705 PDATVLEVRAADRPGLLARLARALERAGVDVRWARVATL-GADVVDVFYVTGAAGGP 760 (774)
T ss_pred CCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeec-CCeEEEEEEEECCCCCc
Confidence 467999999999999999999999999999999999876 88999999999877643
No 29
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=98.77 E-value=9.3e-09 Score=70.88 Aligned_cols=68 Identities=13% Similarity=0.164 Sum_probs=50.7
Q ss_pred EEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCC-----C-eEEEE-EEEcCC---CCCCCCCCccccceeeEEEE
Q 037628 94 VVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTD-----G-YSLDV-FVVDGW---PVEGSVLSPNVADFAMLWSG 161 (166)
Q Consensus 94 I~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~d-----g-~~ldv-F~V~~~---~~~~~~f~~~a~~f~m~~~~ 161 (166)
|++.|+|+||++++||.+|+++|+||.+...++... + +++.. +.+... ...+.++++.+++++|+|.+
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l~~~~~~~~~~ 79 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEELCDDLNVDISL 79 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHHHHHhcceEEe
Confidence 789999999999999999999999999999988651 3 44444 554321 01133456677888888875
No 30
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.76 E-value=2.9e-08 Score=65.68 Aligned_cols=51 Identities=35% Similarity=0.544 Sum_probs=45.8
Q ss_pred EEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCC
Q 037628 93 EVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVE 144 (166)
Q Consensus 93 eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~ 144 (166)
+|.|.++|+||++++|+++|+.+|+||.++++++..+ ...++|.+.++.+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~-~~~~~~~v~~~~~~ 52 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGE-RALDVFYVTDSDGR 52 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCC-EEEEEEEEECCCCC
Confidence 6889999999999999999999999999999988765 88899999876653
No 31
>PRK00194 hypothetical protein; Validated
Probab=98.70 E-value=1.9e-08 Score=71.21 Aligned_cols=71 Identities=13% Similarity=0.119 Sum_probs=53.0
Q ss_pred eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC-eEEEE-EEEcCCCC----CCCCCCccccceeeEEEEE
Q 037628 91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG-YSLDV-FVVDGWPV----EGSVLSPNVADFAMLWSGY 162 (166)
Q Consensus 91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg-~~ldv-F~V~~~~~----~~~~f~~~a~~f~m~~~~~ 162 (166)
.+.|++.|+|+||++++++++|+++|+||.+....+ ..| +.+.. +.+...+. .+..+++..+++.++|.+.
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 79 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTI-MDGYFTMIMLVDISESKKDFAELKEELEELGKELGVKIRIQ 79 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHh-hCCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEE
Confidence 478999999999999999999999999999999986 445 44443 45432111 1234566778888888764
No 32
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.67 E-value=1.2e-07 Score=61.97 Aligned_cols=39 Identities=31% Similarity=0.496 Sum_probs=36.8
Q ss_pred EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC
Q 037628 92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG 130 (166)
Q Consensus 92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg 130 (166)
+.|.+.|+||||++++++++|+++|+||..++++++.++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~ 39 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDG 39 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESST
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCC
Confidence 578999999999999999999999999999999998884
No 33
>PRK05092 PII uridylyl-transferase; Provisional
Probab=98.60 E-value=1e-07 Score=92.79 Aligned_cols=59 Identities=29% Similarity=0.318 Sum_probs=52.0
Q ss_pred CCCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCCCC
Q 037628 87 ELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEGS 146 (166)
Q Consensus 87 ~~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~~~ 146 (166)
...+.++|.|+|+||||||++|+++|+++|+||..|+|.| .++.+.|+|+|.+.++...
T Consensus 839 ~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T-~~~~~~D~F~v~d~~g~~i 897 (931)
T PRK05092 839 ASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIAT-YGERAVDVFYVTDLFGLKI 897 (931)
T ss_pred CCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEE-cCCEEEEEEEEeCCCCCcC
Confidence 3456799999999999999999999999999999999985 5789999999988766443
No 34
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=98.47 E-value=3e-07 Score=88.98 Aligned_cols=60 Identities=23% Similarity=0.328 Sum_probs=52.2
Q ss_pred CCCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCCCCC
Q 037628 87 ELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEGSV 147 (166)
Q Consensus 87 ~~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~~~~ 147 (166)
.+...+.|.|.|+|||||+++|+.+|+++|++|..|+| +|..+.+.|+|+|.+..+....
T Consensus 779 ~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI-~T~gerv~D~Fyv~~~~g~~l~ 838 (854)
T PRK01759 779 EKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKI-TTIGEKAEDFFILTNQQGQALD 838 (854)
T ss_pred CCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEE-cccCceEEEEEEEECCCCCcCC
Confidence 34568999999999999999999999999999999999 4577799999999987765433
No 35
>PRK05007 PII uridylyl-transferase; Provisional
Probab=98.46 E-value=3.4e-07 Score=88.89 Aligned_cols=60 Identities=17% Similarity=0.282 Sum_probs=52.2
Q ss_pred CCCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCCCCC
Q 037628 87 ELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEGSV 147 (166)
Q Consensus 87 ~~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~~~~ 147 (166)
.+..++.|.|.|+|||||+++|+.+|+.+|++|..|+|. |..+.+.|+|+|.+..+...+
T Consensus 804 ~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~-T~gera~DvFyV~~~~g~~l~ 863 (884)
T PRK05007 804 HTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARIT-TIGERVEDLFILATADRRALN 863 (884)
T ss_pred CCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEe-ccCceEEEEEEEEcCCCCcCC
Confidence 345689999999999999999999999999999999994 567799999999887765433
No 36
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.41 E-value=4e-07 Score=62.69 Aligned_cols=66 Identities=17% Similarity=0.094 Sum_probs=46.4
Q ss_pred EEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCC-----CCCCCCccccceeeEEE
Q 037628 94 VVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPV-----EGSVLSPNVADFAMLWS 160 (166)
Q Consensus 94 I~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~-----~~~~f~~~a~~f~m~~~ 160 (166)
|++.++||||+.+++|++|+++|+||.+..+-+ .+|.+.-.+.+..+.. .+.+++..+++.+++..
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~-~~~~f~~~~~v~~p~~~~~~~l~~~l~~l~~~l~l~i~ 72 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAV-IHGRLSLGILVQIPDSADSEALLKDLLFKAHELGLQVR 72 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEE-EcCeeEEEEEEEcCCCCCHHHHHHHHHHHHHHcCceEE
Confidence 789999999999999999999999999998644 4565444566665433 12234444555554443
No 37
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=98.37 E-value=6.7e-07 Score=76.82 Aligned_cols=71 Identities=18% Similarity=0.275 Sum_probs=54.7
Q ss_pred eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCC-C-eEEEEEEEcCCCC-----CCCCCCccccceeeEEEEE
Q 037628 91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTD-G-YSLDVFVVDGWPV-----EGSVLSPNVADFAMLWSGY 162 (166)
Q Consensus 91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~d-g-~~ldvF~V~~~~~-----~~~~f~~~a~~f~m~~~~~ 162 (166)
.+.|++.|+||||++++||++|+++|+||.+..++++.. + |.+ .+.+..+.+ .+..+++.+++++|+|++.
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m-~~~~~~p~~~~~~~L~~~L~~l~~~l~l~i~i~ 84 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFM-RVEFHSEEGLDEDALRAGFAPIAARFGMQWELH 84 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEE-EEEEecCCCCCHHHHHHHHHHHHHHhCcEEEEe
Confidence 578999999999999999999999999999999986543 3 444 344432222 2345677888999999876
No 38
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.35 E-value=1.7e-06 Score=59.90 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=36.7
Q ss_pred eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcC
Q 037628 91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDG 140 (166)
Q Consensus 91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~ 140 (166)
...|++.++||||++++++++|+.+|+||.+.++.+ .+|.+.-.+.|+.
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~-~~~~f~~~~~v~~ 50 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAV-LGGRFTLIMLVSI 50 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEE-ETTEEEEEEEEEE
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEE-EcCeEEEEEEEEe
Confidence 367999999999999999999999999999999976 4554444444443
No 39
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=98.13 E-value=3.2e-06 Score=72.51 Aligned_cols=71 Identities=25% Similarity=0.390 Sum_probs=52.9
Q ss_pred eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeec-CCC-eEEEE-EEEcC-C---CCCCCCCCccccceeeEEEE
Q 037628 91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFST-TDG-YSLDV-FVVDG-W---PVEGSVLSPNVADFAMLWSG 161 (166)
Q Consensus 91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt-~dg-~~ldv-F~V~~-~---~~~~~~f~~~a~~f~m~~~~ 161 (166)
...|++.|+||||+++.||++|+++|+||.+....+. ..| |.+.. +.++. + ...+.++++.+++++++|.+
T Consensus 6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~~~l~l~i~l 83 (286)
T PRK06027 6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALAEEFEMDWRL 83 (286)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHhCCEEEE
Confidence 4789999999999999999999999999999999762 334 44443 44411 1 11244577778888888875
No 40
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=98.12 E-value=9.4e-06 Score=78.39 Aligned_cols=58 Identities=22% Similarity=0.287 Sum_probs=50.8
Q ss_pred CCCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCCC
Q 037628 87 ELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEG 145 (166)
Q Consensus 87 ~~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~~ 145 (166)
.+...+.|.|.|+|||||++.|+.+|+.+|+||..|+|.| ..+.+.|+|+|++..+..
T Consensus 775 ~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t-~~~~~~d~F~v~~~~g~~ 832 (850)
T TIGR01693 775 ASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITT-FGEKAEDVFYVTDLFGLK 832 (850)
T ss_pred CCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEe-cCccceeEEEEECCCCCC
Confidence 3456899999999999999999999999999999999976 456889999998766543
No 41
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=97.99 E-value=9.7e-06 Score=66.04 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=42.4
Q ss_pred CCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCC
Q 037628 89 VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGW 141 (166)
Q Consensus 89 ~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~ 141 (166)
.....|++.++|||||+++||++|+++||||.+.++ +.-.|.|--++.|..+
T Consensus 6 ~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~-t~lgg~Fa~i~lvs~~ 57 (190)
T PRK11589 6 QHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRL-AMLGEEFTFIMLLSGS 57 (190)
T ss_pred ccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhh-HhhCCceEEEEEEeCC
Confidence 356899999999999999999999999999999998 4456655555555543
No 42
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=2.6e-05 Score=75.07 Aligned_cols=54 Identities=26% Similarity=0.436 Sum_probs=48.8
Q ss_pred CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCC
Q 037628 90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVE 144 (166)
Q Consensus 90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~ 144 (166)
..+.+.+.+.|||||+++++++|+.+|++|+.|+| +|-+..+.|+|+|++..+.
T Consensus 790 ~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkI-tT~GErveD~F~vt~~~~~ 843 (867)
T COG2844 790 DKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKI-TTFGERVEDVFIVTDADGQ 843 (867)
T ss_pred CceEEEEEeCCcccHHHHHHHHHHhcccceeeeee-ccccccceeEEEEeccccc
Confidence 57899999999999999999999999999999999 4566689999999987653
No 43
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.91 E-value=6.4e-05 Score=51.77 Aligned_cols=48 Identities=25% Similarity=0.431 Sum_probs=37.5
Q ss_pred eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC-CCeEEEEEEE
Q 037628 91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT-DGYSLDVFVV 138 (166)
Q Consensus 91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~-dg~~ldvF~V 138 (166)
.+.|.|.+.||||+++.|+.++++.|+||.+.++.+.. +|.+.-.|.+
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v 54 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTV 54 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEE
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEE
Confidence 47899999999999999999999999999999998874 6755544443
No 44
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.80 E-value=0.00013 Score=46.96 Aligned_cols=47 Identities=17% Similarity=0.394 Sum_probs=40.3
Q ss_pred EEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcC
Q 037628 94 VVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDG 140 (166)
Q Consensus 94 I~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~ 140 (166)
|.+..+|+||.+++++..|+++|+||.....+...++..+-.|.+++
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 35688999999999999999999999999998766567777777765
No 45
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.69 E-value=0.00028 Score=47.39 Aligned_cols=45 Identities=13% Similarity=0.349 Sum_probs=37.1
Q ss_pred EEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEE
Q 037628 94 VVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVV 138 (166)
Q Consensus 94 I~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V 138 (166)
|.+.++|+||+|+.|+.++++.|.||.+.+.-+..+|.+...|.+
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~v 46 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITV 46 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEE
Confidence 678899999999999999999999999988866556755444444
No 46
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=97.68 E-value=8e-05 Score=60.69 Aligned_cols=73 Identities=14% Similarity=0.049 Sum_probs=53.9
Q ss_pred eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC---CC--eEEEEEEEcCCCC-----CCCCCCccccceeeEEE
Q 037628 91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT---DG--YSLDVFVVDGWPV-----EGSVLSPNVADFAMLWS 160 (166)
Q Consensus 91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~---dg--~~ldvF~V~~~~~-----~~~~f~~~a~~f~m~~~ 160 (166)
.+.++++.+|||||++++|++|+++|+||.+-+..+-. .| .+.-.+.+.-+.+ .+.+|+..+++++.+..
T Consensus 95 ~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~~L~~~l~~l~~eL~vd~~ 174 (190)
T PRK11589 95 TVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQDAANIEQAFKALCTELNAQGS 174 (190)
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHHHHHHHHHHHHHHhCceEE
Confidence 48999999999999999999999999999977665443 34 3444477665544 23446677777777765
Q ss_pred EEE
Q 037628 161 GYR 163 (166)
Q Consensus 161 ~~~ 163 (166)
+..
T Consensus 175 l~~ 177 (190)
T PRK11589 175 INV 177 (190)
T ss_pred EEE
Confidence 544
No 47
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.63 E-value=0.0003 Score=46.93 Aligned_cols=39 Identities=26% Similarity=0.422 Sum_probs=35.1
Q ss_pred EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC
Q 037628 92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG 130 (166)
Q Consensus 92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg 130 (166)
..|+|..+|+||.+++++.+|+++|+||....++...+.
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~ 40 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF 40 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC
Confidence 468899999999999999999999999999999876553
No 48
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.61 E-value=0.00016 Score=48.26 Aligned_cols=49 Identities=24% Similarity=0.460 Sum_probs=39.7
Q ss_pred EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeec-CCCeEEEEEEEcC
Q 037628 92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFST-TDGYSLDVFVVDG 140 (166)
Q Consensus 92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt-~dg~~ldvF~V~~ 140 (166)
+.+.+..+|+||.+++++.+|+++|+||.+...+.. ..+...-+|.++.
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~ 51 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQT 51 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEec
Confidence 578999999999999999999999999998876554 3445555577654
No 49
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.54 E-value=0.00046 Score=44.99 Aligned_cols=45 Identities=22% Similarity=0.216 Sum_probs=35.0
Q ss_pred EEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC----CCeEEEEEEE
Q 037628 94 VVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT----DGYSLDVFVV 138 (166)
Q Consensus 94 I~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~----dg~~ldvF~V 138 (166)
+.|.++|+||++++|+.+|++.|+||.+....... .+...-.|.+
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v 49 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTL 49 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEE
Confidence 35788999999999999999999999988876543 3544433444
No 50
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.51 E-value=0.00015 Score=52.74 Aligned_cols=47 Identities=21% Similarity=0.396 Sum_probs=38.0
Q ss_pred EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEc
Q 037628 92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVD 139 (166)
Q Consensus 92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~ 139 (166)
..|||...||||+.+.++++|+++|.||++-.+ |--+|++-=.+.|+
T Consensus 4 avITV~GkDr~GIva~is~vLAe~~vNIldisQ-tvm~~~ftm~~lV~ 50 (90)
T COG3830 4 AVITVIGKDRVGIVAAVSRVLAEHGVNILDISQ-TVMDGFFTMIMLVD 50 (90)
T ss_pred EEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHH-HHHhhhceeeeEEc
Confidence 679999999999999999999999999998777 44677443333333
No 51
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.50 E-value=0.0008 Score=43.91 Aligned_cols=49 Identities=22% Similarity=0.365 Sum_probs=39.1
Q ss_pred EEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCC
Q 037628 93 EVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGW 141 (166)
Q Consensus 93 eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~ 141 (166)
+|.+.++|+||.+++++..|+++++||......+..++...-++.+.+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~ 50 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEGV 50 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEecc
Confidence 6889999999999999999999999999988865544544334666543
No 52
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=97.47 E-value=0.00074 Score=43.61 Aligned_cols=47 Identities=23% Similarity=0.415 Sum_probs=39.8
Q ss_pred EEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC-CCeEEEEEEEcC
Q 037628 94 VVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT-DGYSLDVFVVDG 140 (166)
Q Consensus 94 I~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~-dg~~ldvF~V~~ 140 (166)
+.+.++|++|++++++.+|+++|+||.+....... ++...-.|.+++
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~ 49 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDS 49 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCC
Confidence 67899999999999999999999999999997755 466666677744
No 53
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.37 E-value=0.0012 Score=43.77 Aligned_cols=48 Identities=15% Similarity=0.412 Sum_probs=37.9
Q ss_pred EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC-eEEEEEEEc
Q 037628 92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG-YSLDVFVVD 139 (166)
Q Consensus 92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg-~~ldvF~V~ 139 (166)
+.+.+.++|+||.++++++.|+++|+||.+...+....+ .....+.+.
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~ 50 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK 50 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence 578899999999999999999999999998887765333 223345554
No 54
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=97.36 E-value=0.00081 Score=44.60 Aligned_cols=48 Identities=27% Similarity=0.453 Sum_probs=39.6
Q ss_pred EEEEecCCCchHHHHHHHHHHCCCcEEEEEEeec-CCCeEEEEEEEcCC
Q 037628 94 VVFSTVDKPKLLSQLSALLSDIGLNIREAHVFST-TDGYSLDVFVVDGW 141 (166)
Q Consensus 94 I~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt-~dg~~ldvF~V~~~ 141 (166)
+++..+|+||.++++++.|+++|+||.+...... .++...-+|.++.+
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~ 50 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEP 50 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCC
Confidence 5678999999999999999999999998877654 34566667888763
No 55
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.33 E-value=0.0015 Score=42.33 Aligned_cols=48 Identities=25% Similarity=0.317 Sum_probs=38.5
Q ss_pred EEEEecCCCchHHHHHHHHHHCCCcEEEEEEeec-CCCeEEEEEEEcCC
Q 037628 94 VVFSTVDKPKLLSQLSALLSDIGLNIREAHVFST-TDGYSLDVFVVDGW 141 (166)
Q Consensus 94 I~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt-~dg~~ldvF~V~~~ 141 (166)
|.+.++|+||.+++++..|+++|+||........ .++...-.+.+.+.
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~ 50 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP 50 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC
Confidence 5788999999999999999999999999988763 34555444776654
No 56
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=97.29 E-value=0.0018 Score=41.96 Aligned_cols=49 Identities=31% Similarity=0.449 Sum_probs=39.8
Q ss_pred EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeec-CCCeEEEEEEEcC
Q 037628 92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFST-TDGYSLDVFVVDG 140 (166)
Q Consensus 92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt-~dg~~ldvF~V~~ 140 (166)
|.|.+.+.|+||+++.++.+|+++|+||......+. .++.+.-.|.+..
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 50 (72)
T cd04878 1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG 50 (72)
T ss_pred CEEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC
Confidence 357889999999999999999999999999998765 4555555566653
No 57
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.29 E-value=0.0012 Score=42.83 Aligned_cols=47 Identities=28% Similarity=0.427 Sum_probs=38.1
Q ss_pred EEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC-CCeEEEEEEEcC
Q 037628 94 VVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT-DGYSLDVFVVDG 140 (166)
Q Consensus 94 I~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~-dg~~ldvF~V~~ 140 (166)
+.+..+|+||-++++++.|+++|+||.....+... .|...-.|.+++
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~ 49 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED 49 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC
Confidence 56788999999999999999999999988876654 355555577754
No 58
>PLN02828 formyltetrahydrofolate deformylase
Probab=97.23 E-value=8.6e-05 Score=63.55 Aligned_cols=55 Identities=18% Similarity=0.157 Sum_probs=43.0
Q ss_pred HHHHHHHCCCcEEEEEEeecCCC--eEEEE-EEEcCC----CCCCCCCCccccceee---EEEEE
Q 037628 108 LSALLSDIGLNIREAHVFSTTDG--YSLDV-FVVDGW----PVEGSVLSPNVADFAM---LWSGY 162 (166)
Q Consensus 108 It~~La~~glNI~~A~i~tt~dg--~~ldv-F~V~~~----~~~~~~f~~~a~~f~m---~~~~~ 162 (166)
||++|+++|+||.++++|++.++ |+|++ |...+. ...+..|++.+++|.| +|++.
T Consensus 1 ~~~~~~~~~~ni~~~~~~~d~~~~~ff~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (268)
T PLN02828 1 LSDCIASRGGNILGVDVFVPENKNVFYSRSEFIFDPVKWPRAQMDEDFQEISKHFKALKSVVRVP 65 (268)
T ss_pred CcHHHHhCCCCEeEcccccCCCCCeeEEEEEEEeCCCCCCHHHHHHHHHHHHHhcCCcceEEEEc
Confidence 57899999999999999998765 78888 876531 1224567889999999 77764
No 59
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.23 E-value=0.002 Score=43.20 Aligned_cols=48 Identities=13% Similarity=0.157 Sum_probs=38.3
Q ss_pred EEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcC
Q 037628 93 EVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDG 140 (166)
Q Consensus 93 eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~ 140 (166)
.+.+.++|+||++++|++.|+..|+||....+.+..+|.+--.|.+..
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v 49 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDT 49 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEc
Confidence 578999999999999999999999999998875544564443466643
No 60
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=97.18 E-value=0.0027 Score=37.54 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=31.4
Q ss_pred EEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC
Q 037628 94 VVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT 128 (166)
Q Consensus 94 I~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~ 128 (166)
|.+.++|++|++++++++|+.+|++|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46889999999999999999999999999886543
No 61
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=97.14 E-value=0.0026 Score=50.51 Aligned_cols=49 Identities=29% Similarity=0.356 Sum_probs=42.4
Q ss_pred EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC-CCeEEEEEEEcC
Q 037628 92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT-DGYSLDVFVVDG 140 (166)
Q Consensus 92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~-dg~~ldvF~V~~ 140 (166)
+.|.+...|+||.+++|+++|+..|+||.+-.+..+. +|...-+++|++
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~ 51 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG 51 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC
Confidence 5789999999999999999999999999999998876 466655688865
No 62
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.11 E-value=0.0013 Score=45.17 Aligned_cols=48 Identities=29% Similarity=0.362 Sum_probs=41.7
Q ss_pred EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC-eEEEEEEEcCC
Q 037628 92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG-YSLDVFVVDGW 141 (166)
Q Consensus 92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg-~~ldvF~V~~~ 141 (166)
++|+|.|||+.||=..++.++-+.|++|..++.- .|| ..+-+|+|...
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~s--TDGkWCyiv~wVv~~ 49 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDS--TDGRWCYIVFWVVPR 49 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccc--cCCcEEEEEEEEecC
Confidence 4799999999999999999999999999999984 355 78888887653
No 63
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.09 E-value=0.0027 Score=43.27 Aligned_cols=35 Identities=11% Similarity=0.245 Sum_probs=32.2
Q ss_pred EEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeec
Q 037628 93 EVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFST 127 (166)
Q Consensus 93 eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt 127 (166)
.|.|.+.||+|+++.|+.+++..|.||...++.+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~ 36 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK 36 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence 47899999999999999999999999999999654
No 64
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.05 E-value=0.0011 Score=44.64 Aligned_cols=34 Identities=21% Similarity=0.187 Sum_probs=30.6
Q ss_pred EEEEecCCCchHHHHHHHHHHCCCcEEEEEEeec
Q 037628 94 VVFSTVDKPKLLSQLSALLSDIGLNIREAHVFST 127 (166)
Q Consensus 94 I~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt 127 (166)
+.+..+|+||-+++++..|+++|+||.+...+..
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 6788999999999999999999999998877654
No 65
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=97.03 E-value=0.0038 Score=49.77 Aligned_cols=49 Identities=31% Similarity=0.409 Sum_probs=42.0
Q ss_pred EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC-CCeEEEEEEEcC
Q 037628 92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT-DGYSLDVFVVDG 140 (166)
Q Consensus 92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~-dg~~ldvF~V~~ 140 (166)
+.|.+...|+||.+++|+++|+.+|+||.+-.+..+. +|..--++++++
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~ 52 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG 52 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC
Confidence 6789999999999999999999999999999888776 466555577764
No 66
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=97.00 E-value=0.00079 Score=44.37 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=37.5
Q ss_pred EEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCC
Q 037628 94 VVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGW 141 (166)
Q Consensus 94 I~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~ 141 (166)
|++.+.|+||++++++..|+..|+||......+ .+|.+.-.|.++..
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~-~~~~a~~~~~~~~~ 48 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQT-RGEIGYVVIDIDSE 48 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccC-CCCEEEEEEEcCCC
Confidence 678999999999999999999999998876543 23666656776554
No 67
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.96 E-value=0.0053 Score=40.42 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=35.9
Q ss_pred EEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCC-CeEEEEEEEc
Q 037628 94 VVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTD-GYSLDVFVVD 139 (166)
Q Consensus 94 I~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~d-g~~ldvF~V~ 139 (166)
|.+.+.|++|++++++.+|+.+|+||.........+ +.+.-.+.+.
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~ 49 (79)
T cd04881 3 LRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTH 49 (79)
T ss_pred EEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEc
Confidence 678899999999999999999999999988754444 5443334443
No 68
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=96.88 E-value=0.005 Score=43.42 Aligned_cols=48 Identities=13% Similarity=0.227 Sum_probs=38.9
Q ss_pred EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEE-EEEc
Q 037628 92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDV-FVVD 139 (166)
Q Consensus 92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldv-F~V~ 139 (166)
+.|.+...|+||++++++++++..|.||.+-.+-.+.+.-..+. +.+.
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~ 51 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV 51 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE
Confidence 67899999999999999999999999999988876665433333 5543
No 69
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.87 E-value=0.0062 Score=42.89 Aligned_cols=48 Identities=15% Similarity=0.385 Sum_probs=41.6
Q ss_pred EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEE-EEEc
Q 037628 92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDV-FVVD 139 (166)
Q Consensus 92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldv-F~V~ 139 (166)
+.|.+...++||.+++++++++..|.||.+-..-.+.++-..+. +.|.
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~ 52 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA 52 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC
Confidence 67899999999999999999999999999999988777744554 7774
No 70
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.87 E-value=0.0076 Score=41.53 Aligned_cols=39 Identities=21% Similarity=0.445 Sum_probs=33.7
Q ss_pred EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC
Q 037628 92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG 130 (166)
Q Consensus 92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg 130 (166)
+.+++..+|+||.++++...|+++|+||.+-......++
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~ 40 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGG 40 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCC
Confidence 357778899999999999999999999999887766554
No 71
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.82 E-value=0.008 Score=37.41 Aligned_cols=46 Identities=17% Similarity=0.425 Sum_probs=35.6
Q ss_pred EEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEc
Q 037628 94 VVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVD 139 (166)
Q Consensus 94 I~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~ 139 (166)
|.+.++|+||.++.++.+|+.+++||.+..+....+++..-.|.+.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 46 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLE 46 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEE
Confidence 4578999999999999999999999999988654435443334443
No 72
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=96.79 E-value=0.0022 Score=61.33 Aligned_cols=50 Identities=24% Similarity=0.167 Sum_probs=44.4
Q ss_pred EEEEEEe-cCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCC
Q 037628 92 HEVVFST-VDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPV 143 (166)
Q Consensus 92 ~eI~I~~-~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~ 143 (166)
..++|.. +|++|++++++++|+.+|++|.+|.+.+ +|.....|.|....+
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~--~~~~~~~~~v~~~~~ 597 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA--NGPWSAEFDVRANGP 597 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec--CCceEEEEEEecCCC
Confidence 5777777 9999999999999999999999999976 887888899987555
No 73
>PRK08577 hypothetical protein; Provisional
Probab=96.79 E-value=0.011 Score=44.99 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=41.2
Q ss_pred CCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC-CCeEEEE--EEEcC
Q 037628 89 VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT-DGYSLDV--FVVDG 140 (166)
Q Consensus 89 ~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~-dg~~ldv--F~V~~ 140 (166)
...+.|.+.+.|+||+++.++++|+++|.||.+....+.. ++++.-. +.+.+
T Consensus 54 k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~ 108 (136)
T PRK08577 54 KKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSK 108 (136)
T ss_pred ccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCC
Confidence 4578999999999999999999999999999998886655 4544333 44443
No 74
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.78 E-value=0.0055 Score=44.13 Aligned_cols=48 Identities=19% Similarity=0.222 Sum_probs=40.0
Q ss_pred EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC-eEEEEEEEc
Q 037628 92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG-YSLDVFVVD 139 (166)
Q Consensus 92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg-~~ldvF~V~ 139 (166)
+.|.+...|+||+++++|++|+..|.||.+-.+-.|.+. +.--++++.
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~ 51 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD 51 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe
Confidence 578999999999999999999999999999998776664 443446664
No 75
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.78 E-value=0.0075 Score=44.44 Aligned_cols=50 Identities=14% Similarity=0.295 Sum_probs=40.8
Q ss_pred CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEE-EEEc
Q 037628 90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDV-FVVD 139 (166)
Q Consensus 90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldv-F~V~ 139 (166)
+-+.|.+...|+||++++||++|+..|.||.+-.+-.+.+.-.-+. ..+.
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~ 57 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN 57 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc
Confidence 4588999999999999999999999999999988877766533333 4554
No 76
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.74 E-value=0.0058 Score=49.31 Aligned_cols=49 Identities=24% Similarity=0.337 Sum_probs=39.6
Q ss_pred EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC-eEEEEEEEcC
Q 037628 92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG-YSLDVFVVDG 140 (166)
Q Consensus 92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg-~~ldvF~V~~ 140 (166)
+.|.+...|+||++++||++|+..|.||.+-.+..+.+. ..--++.+.+
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~ 52 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG 52 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC
Confidence 679999999999999999999999999999999765554 3322255544
No 77
>PRK04435 hypothetical protein; Provisional
Probab=96.62 E-value=0.013 Score=45.63 Aligned_cols=52 Identities=17% Similarity=0.155 Sum_probs=42.2
Q ss_pred CCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcC
Q 037628 89 VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDG 140 (166)
Q Consensus 89 ~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~ 140 (166)
+....|.+.+.|+||++++|++.|+..|+||...++....+|.+--.|.+..
T Consensus 67 ~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVev 118 (147)
T PRK04435 67 GKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDT 118 (147)
T ss_pred CcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEe
Confidence 4568999999999999999999999999999998885545675544466544
No 78
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=96.44 E-value=0.008 Score=48.98 Aligned_cols=49 Identities=27% Similarity=0.428 Sum_probs=42.4
Q ss_pred EEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC-eEEEEEEEcCC
Q 037628 93 EVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG-YSLDVFVVDGW 141 (166)
Q Consensus 93 eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg-~~ldvF~V~~~ 141 (166)
-+.|.+.++||.+..+|+.++++|.||..||+|.-.|| ..+--|.+.+-
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi 53 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGI 53 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCC
Confidence 36788899999999999999999999999999999999 55555777653
No 79
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=96.10 E-value=0.0025 Score=45.14 Aligned_cols=69 Identities=19% Similarity=0.188 Sum_probs=46.3
Q ss_pred EEEEEecC-CCchHHHHHHHHHHCCCcEEEEEEeecCC--------CeEEEEEEEcCCCCC----CCCCCccccceeeEE
Q 037628 93 EVVFSTVD-KPKLLSQLSALLSDIGLNIREAHVFSTTD--------GYSLDVFVVDGWPVE----GSVLSPNVADFAMLW 159 (166)
Q Consensus 93 eI~I~~~D-rpGLfa~It~~La~~glNI~~A~i~tt~d--------g~~ldvF~V~~~~~~----~~~f~~~a~~f~m~~ 159 (166)
.||+..+| +.|+++++|++|+++|+||..-+..+..- ...+-.|.|.++... ..++...+++..++.
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~lr~~L~~la~elgvDI 80 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLELASELNVDI 80 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCCCCCHHHHHHHHHHHhcccCceE
Confidence 37999999 99999999999999999999766643211 122334777655432 222445566666666
Q ss_pred EE
Q 037628 160 SG 161 (166)
Q Consensus 160 ~~ 161 (166)
.+
T Consensus 81 av 82 (84)
T cd04871 81 AF 82 (84)
T ss_pred EE
Confidence 54
No 80
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=95.93 E-value=0.0062 Score=49.25 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=40.0
Q ss_pred CCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcC
Q 037628 89 VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDG 140 (166)
Q Consensus 89 ~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~ 140 (166)
.++..|+++..|+||+...||...+++||||.++++-. -.+.+.-+..+.+
T Consensus 3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~-~g~~~a~i~lisg 53 (176)
T COG2716 3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAM-LGEEFAGIMLISG 53 (176)
T ss_pred ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHH-hhcceeEEEEEee
Confidence 35689999999999999999999999999999999943 4443333433433
No 81
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=95.83 E-value=0.055 Score=36.58 Aligned_cols=36 Identities=22% Similarity=0.416 Sum_probs=30.9
Q ss_pred EEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCC
Q 037628 94 VVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTD 129 (166)
Q Consensus 94 I~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~d 129 (166)
+.+..+|+||-++.+...|+.+|+||..-+......
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~ 37 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRK 37 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCC
Confidence 567779999999999999999999999887665444
No 82
>PRK07334 threonine dehydratase; Provisional
Probab=95.54 E-value=0.059 Score=47.99 Aligned_cols=50 Identities=18% Similarity=0.261 Sum_probs=40.5
Q ss_pred eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeec----CCCeEE-EE-EEEcC
Q 037628 91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFST----TDGYSL-DV-FVVDG 140 (166)
Q Consensus 91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt----~dg~~l-dv-F~V~~ 140 (166)
...|.|.+.||+|+|++|+.+|++.++||.+.+..+. .++.+. .+ +.|.+
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d 381 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRD 381 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCC
Confidence 4799999999999999999999999999999998654 456543 33 55544
No 83
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=95.44 E-value=0.087 Score=43.15 Aligned_cols=52 Identities=15% Similarity=0.163 Sum_probs=44.1
Q ss_pred CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCC-CeEEEEEEEcCC
Q 037628 90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTD-GYSLDVFVVDGW 141 (166)
Q Consensus 90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~d-g~~ldvF~V~~~ 141 (166)
.++.+.+.-.|+||...+|+.+|.++|+||-..++-.... |-++-+..++.+
T Consensus 147 ~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~ 199 (208)
T TIGR00719 147 EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDKN 199 (208)
T ss_pred CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCC
Confidence 4578888889999999999999999999999999976544 478878888754
No 84
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.21 E-value=0.07 Score=35.83 Aligned_cols=41 Identities=27% Similarity=0.437 Sum_probs=32.0
Q ss_pred CCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEE-EEEcC
Q 037628 100 DKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDV-FVVDG 140 (166)
Q Consensus 100 DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldv-F~V~~ 140 (166)
|+||.+.+|++++...|.||.+-.+..+.++-..++ +.+.+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~ 42 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG 42 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee
Confidence 689999999999999999999999987666634444 66665
No 85
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=95.06 E-value=0.076 Score=41.02 Aligned_cols=50 Identities=22% Similarity=0.276 Sum_probs=45.4
Q ss_pred EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCC
Q 037628 92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGW 141 (166)
Q Consensus 92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~ 141 (166)
-.+-+-.+|+||=+++|+++|..+++|+--+..|++...-++-++.+++-
T Consensus 70 dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed~ 119 (142)
T COG4747 70 DVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVEDI 119 (142)
T ss_pred eEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhHH
Confidence 36778899999999999999999999999999999999888888888764
No 86
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=94.78 E-value=0.12 Score=50.14 Aligned_cols=50 Identities=16% Similarity=0.140 Sum_probs=40.6
Q ss_pred eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC-CCeEEEE--EEEcC
Q 037628 91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT-DGYSLDV--FVVDG 140 (166)
Q Consensus 91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~-dg~~ldv--F~V~~ 140 (166)
...|.|.+.||+||++.|+.+|+..++||.+.++-+.. ++++.-. +.|.+
T Consensus 666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~ 718 (743)
T PRK10872 666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYN 718 (743)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECC
Confidence 46899999999999999999999999999999987654 6654433 55544
No 87
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=94.30 E-value=0.18 Score=48.57 Aligned_cols=50 Identities=16% Similarity=0.194 Sum_probs=40.4
Q ss_pred eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEE-EE-EEEcC
Q 037628 91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSL-DV-FVVDG 140 (166)
Q Consensus 91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~l-dv-F~V~~ 140 (166)
.+.|.|.+.||+|+++.|+.+|+..++||.+++.-+..++++. .. +.|.+
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~ 677 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARD 677 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECC
Confidence 4688999999999999999999999999999998665556543 32 55544
No 88
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=94.15 E-value=0.082 Score=47.49 Aligned_cols=51 Identities=18% Similarity=0.289 Sum_probs=44.2
Q ss_pred CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCC
Q 037628 90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGW 141 (166)
Q Consensus 90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~ 141 (166)
+.+.|++.-+|+||.+++|+++|+++|+||...+..+ ..+.++-++.+++.
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~-~~~~A~~iie~D~~ 387 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQT-DGEIGYVVIDVDAD 387 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheecc-CCCEEEEEEEeCCC
Confidence 5688999999999999999999999999999888854 44788888888763
No 89
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=93.92 E-value=0.24 Score=47.52 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=40.8
Q ss_pred CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEE-EE-EEEcC
Q 037628 90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSL-DV-FVVDG 140 (166)
Q Consensus 90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~l-dv-F~V~~ 140 (166)
-.+.|.|.+.||+|+++.|+.+|+..++||.+.+.-+..++++. .. +.|.+
T Consensus 609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~ 661 (683)
T TIGR00691 609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKN 661 (683)
T ss_pred eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECC
Confidence 35689999999999999999999999999999998665456443 33 55544
No 90
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=93.82 E-value=0.11 Score=42.01 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=31.5
Q ss_pred CCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEE
Q 037628 88 LVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAH 123 (166)
Q Consensus 88 ~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~ 123 (166)
..-.+.+-+.+.||||++.++|.+|..+|+||-+-.
T Consensus 89 ~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~ 124 (176)
T COG2716 89 NPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLV 124 (176)
T ss_pred CCceEEEEEEecCCccHHHHHHHHHHhcCCchhhce
Confidence 345678999999999999999999999999997543
No 91
>PRK06545 prephenate dehydrogenase; Validated
Probab=93.81 E-value=0.14 Score=44.93 Aligned_cols=42 Identities=14% Similarity=0.442 Sum_probs=37.3
Q ss_pred CCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC
Q 037628 89 VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG 130 (166)
Q Consensus 89 ~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg 130 (166)
...++|.|.-+|+||-+++|++.|+..|+||.+-+|.-..++
T Consensus 288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~ 329 (359)
T PRK06545 288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEARED 329 (359)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCC
Confidence 457999999999999999999999999999999999655443
No 92
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.30 E-value=0.11 Score=34.82 Aligned_cols=29 Identities=28% Similarity=0.364 Sum_probs=26.2
Q ss_pred EEEecCCCchHHHHHHHHHHCCCcEEEEEE
Q 037628 95 VFSTVDKPKLLSQLSALLSDIGLNIREAHV 124 (166)
Q Consensus 95 ~I~~~DrpGLfa~It~~La~~glNI~~A~i 124 (166)
.+.-|||||=|.+++.+|+. |.||.+-+-
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~ 30 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHY 30 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEE
Confidence 56779999999999999999 999998755
No 93
>PRK06382 threonine dehydratase; Provisional
Probab=93.26 E-value=0.37 Score=42.99 Aligned_cols=53 Identities=23% Similarity=0.266 Sum_probs=41.6
Q ss_pred CCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEe----ecCCCeEEEEEEEcCC
Q 037628 89 VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVF----STTDGYSLDVFVVDGW 141 (166)
Q Consensus 89 ~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~----tt~dg~~ldvF~V~~~ 141 (166)
...+.+.|..+|+||-|++++..|.++|+||.+...+ ....+...-+|.++..
T Consensus 328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~ 384 (406)
T PRK06382 328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR 384 (406)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC
Confidence 4568999999999999999999999999999987664 3344555555666543
No 94
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=93.24 E-value=0.17 Score=40.67 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=30.5
Q ss_pred CCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEE
Q 037628 89 VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHV 124 (166)
Q Consensus 89 ~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i 124 (166)
.+..+|.....+.||+++.+++.++.+|++|.++-.
T Consensus 93 ~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~ 128 (167)
T COG2150 93 LGVIEIYPEDARYPGILAGVASLIAKRGISIRQIIS 128 (167)
T ss_pred CeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEec
Confidence 355666666788899999999999999999998765
No 95
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.05 E-value=0.69 Score=33.30 Aligned_cols=40 Identities=13% Similarity=0.216 Sum_probs=33.8
Q ss_pred CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCC
Q 037628 90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTD 129 (166)
Q Consensus 90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~d 129 (166)
+.+.|.+..+|+||-|+++-+.|+.+|+|+..-.......
T Consensus 13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~ 52 (90)
T cd04931 13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRL 52 (90)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCC
Confidence 4578888889999999999999999999999776655433
No 96
>PRK08818 prephenate dehydrogenase; Provisional
Probab=92.89 E-value=0.47 Score=42.37 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=35.0
Q ss_pred CeEEEEEEec-CCCchHHHHHHHHHHCCCcEEEEEEeecCCC
Q 037628 90 PIHEVVFSTV-DKPKLLSQLSALLSDIGLNIREAHVFSTTDG 130 (166)
Q Consensus 90 ~~~eI~I~~~-DrpGLfa~It~~La~~glNI~~A~i~tt~dg 130 (166)
..+.|.+..+ |+||.+++|++.|+.+|+||..-++.....+
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~ 335 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAG 335 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCc
Confidence 4678888887 9999999999999999999998888544444
No 97
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=92.18 E-value=0.56 Score=36.33 Aligned_cols=49 Identities=24% Similarity=0.361 Sum_probs=37.0
Q ss_pred EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCC
Q 037628 92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGW 141 (166)
Q Consensus 92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~ 141 (166)
-+|.+...++||-++.++..|+++|+||..-.|-. ...|-+-...|+.+
T Consensus 4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAd-t~dFGIiRmvV~~~ 52 (142)
T COG4747 4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIAD-TGDFGIIRMVVDRP 52 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHcCCceEEEEecc-ccCcceEEEEcCCh
Confidence 36889999999999999999999999999766633 33354444555543
No 98
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=91.92 E-value=0.37 Score=44.59 Aligned_cols=52 Identities=25% Similarity=0.401 Sum_probs=43.4
Q ss_pred CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCC-CeEEEEEEEcCC
Q 037628 90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTD-GYSLDVFVVDGW 141 (166)
Q Consensus 90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~d-g~~ldvF~V~~~ 141 (166)
.++.+.+..+|+||.+++++..|+.+++||-..++..... |.++-++.++..
T Consensus 451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~~ 503 (526)
T PRK13581 451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDP 503 (526)
T ss_pred CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCCC
Confidence 4567777889999999999999999999999998875444 478888888764
No 99
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=91.72 E-value=0.72 Score=31.42 Aligned_cols=38 Identities=16% Similarity=0.320 Sum_probs=31.5
Q ss_pred EEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC
Q 037628 93 EVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG 130 (166)
Q Consensus 93 eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg 130 (166)
.|.+..+|+||-++.+-+.|+.+|+|+..-.......+
T Consensus 2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~ 39 (74)
T cd04904 2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRN 39 (74)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCC
Confidence 46677799999999999999999999997766654443
No 100
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=91.67 E-value=0.37 Score=32.19 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=28.3
Q ss_pred CeEEEEEEec----CCCchHHHHHHHHHHCCCcEEEEE
Q 037628 90 PIHEVVFSTV----DKPKLLSQLSALLSDIGLNIREAH 123 (166)
Q Consensus 90 ~~~eI~I~~~----DrpGLfa~It~~La~~glNI~~A~ 123 (166)
+...|+|..+ |.||+.+++++.|++.|+||...-
T Consensus 5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 5 DWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred CEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 4567888888 799999999999999999998644
No 101
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=90.83 E-value=0.85 Score=44.12 Aligned_cols=52 Identities=19% Similarity=0.313 Sum_probs=41.5
Q ss_pred CCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeE-EEE-EEEcC
Q 037628 89 VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYS-LDV-FVVDG 140 (166)
Q Consensus 89 ~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~-ldv-F~V~~ 140 (166)
.-.+.|.|.+-||+|||+.|+.+|+..+.||.....-++.++++ ++. +.|.+
T Consensus 625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~n 678 (701)
T COG0317 625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVKN 678 (701)
T ss_pred ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEECc
Confidence 34679999999999999999999999999999999987644433 333 45543
No 102
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=90.65 E-value=0.45 Score=44.07 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=43.1
Q ss_pred CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC-eEEEEEEEcCC
Q 037628 90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG-YSLDVFVVDGW 141 (166)
Q Consensus 90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg-~~ldvF~V~~~ 141 (166)
.++.+.+...|+||..++++..|+++++||-..++.....| .++-++.++..
T Consensus 450 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~~ 502 (525)
T TIGR01327 450 EGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQP 502 (525)
T ss_pred CccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCCC
Confidence 34567777899999999999999999999998888755544 78888888764
No 103
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.43 E-value=1.4 Score=30.49 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=31.4
Q ss_pred EEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC
Q 037628 93 EVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG 130 (166)
Q Consensus 93 eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg 130 (166)
.+.+..+|+||-++++-..|+.+|+|+..-........
T Consensus 2 sl~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~ 39 (74)
T cd04929 2 SVIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRR 39 (74)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCC
Confidence 46677799999999999999999999997766654443
No 104
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=90.10 E-value=1.3 Score=38.84 Aligned_cols=36 Identities=17% Similarity=0.093 Sum_probs=32.0
Q ss_pred CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEe
Q 037628 90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVF 125 (166)
Q Consensus 90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~ 125 (166)
....+.|..+|+||.|++++..+++.|.||.+-...
T Consensus 304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~ 339 (380)
T TIGR01127 304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHD 339 (380)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 345899999999999999999999999999987543
No 105
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.62 E-value=1.5 Score=32.97 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=32.1
Q ss_pred eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeec
Q 037628 91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFST 127 (166)
Q Consensus 91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt 127 (166)
-+.+.+..+|+||-|+.+-..|+.+|+|+..-.....
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~ 77 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPS 77 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcC
Confidence 4778888899999999999999999999997666544
No 106
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.43 E-value=1.8 Score=26.57 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=31.0
Q ss_pred ecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcC
Q 037628 98 TVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDG 140 (166)
Q Consensus 98 ~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~ 140 (166)
.++.+|.++++.+.|+.+|+||....+....+|..--+|.+..
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~ 50 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPK 50 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeH
Confidence 5889999999999999999999876664333342222366643
No 107
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=89.04 E-value=1 Score=36.18 Aligned_cols=50 Identities=26% Similarity=0.304 Sum_probs=40.9
Q ss_pred eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEE-EEEcC
Q 037628 91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDV-FVVDG 140 (166)
Q Consensus 91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldv-F~V~~ 140 (166)
.+.+.+.-.|.||.+++++|.++..|.||-+--+-.|.+.-..+. +++.+
T Consensus 4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g 54 (163)
T COG0440 4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG 54 (163)
T ss_pred eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC
Confidence 478888999999999999999999999999988876665544444 66655
No 108
>PRK08198 threonine dehydratase; Provisional
Probab=88.95 E-value=1 Score=39.95 Aligned_cols=38 Identities=16% Similarity=0.269 Sum_probs=34.1
Q ss_pred CCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEe
Q 037628 88 LVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVF 125 (166)
Q Consensus 88 ~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~ 125 (166)
......+.|.-+|+||-|+++...++..|.||.+-...
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 34567999999999999999999999999999998775
No 109
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=87.84 E-value=3.7 Score=43.04 Aligned_cols=98 Identities=17% Similarity=0.167 Sum_probs=71.3
Q ss_pred cccCccccccCCCCchHhHHHHHHHHHHhCCCCCCCeeEEEEeeeecccCCCCCcccccccccccCCCCCCCCCCCcccc
Q 037628 4 FHFGISYGLDVNMDRVEDVLLHQKLLAVAKDPEKRPAYHIRFIENLCTRTDGNDDQLFVNSISTARPSLDADNEGIVPSQ 83 (166)
Q Consensus 4 ~rlP~rY~ldv~~~~aedVl~H~~lL~~a~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~ 83 (166)
+.+|..|.-++.+ +.-+.+...|+.+..+. +..+.. .+ .
T Consensus 444 ~aFp~~Yre~f~p---~~Av~Di~~le~l~~~~-~~~~~l--~~----------------------~------------- 482 (1528)
T PF05088_consen 444 NAFPASYREDFSP---EEAVRDIERLESLSGEG-PLAVDL--YR----------------------P------------- 482 (1528)
T ss_pred HhCCHHHHhhCCc---hhHHHHHHHHHhhcCCC-CceEEE--ec----------------------c-------------
Confidence 4689999999997 66677888888886533 233322 22 0
Q ss_pred cccCCCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecC--CC--eEEEEEEEcCCCC
Q 037628 84 KRQELVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTT--DG--YSLDVFVVDGWPV 143 (166)
Q Consensus 84 ~~~~~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~--dg--~~ldvF~V~~~~~ 143 (166)
.....+.+.+.|+.+.++..|+++.-+|...|+.|.+.+-|.-. +| +.+-.|.+....+
T Consensus 483 -~~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~ 545 (1528)
T PF05088_consen 483 -AGAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDG 545 (1528)
T ss_pred -CCCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCC
Confidence 11123468999999999999999999999999999998877543 44 5556688877655
No 110
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.28 E-value=3.2 Score=28.87 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=31.4
Q ss_pred EEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC--eEEEEEEEcC
Q 037628 93 EVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG--YSLDVFVVDG 140 (166)
Q Consensus 93 eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg--~~ldvF~V~~ 140 (166)
.+.+.-||+||=|++++.+|+ +.||.+..--....+ .++-++.+.+
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~ 50 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVAN 50 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCC
Confidence 367788999999999999999 788885444222223 3333466655
No 111
>PRK11899 prephenate dehydratase; Provisional
Probab=87.18 E-value=2.7 Score=36.15 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=34.7
Q ss_pred eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC
Q 037628 91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG 130 (166)
Q Consensus 91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg 130 (166)
-+.|.+..+|+||.|..+-+.|+.+|+|+..-...-+.++
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~ 233 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGS 233 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCC
Confidence 5778888899999999999999999999997777665555
No 112
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=86.58 E-value=0.74 Score=39.79 Aligned_cols=52 Identities=27% Similarity=0.296 Sum_probs=39.7
Q ss_pred CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC-eEEEEEEEcCC
Q 037628 90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG-YSLDVFVVDGW 141 (166)
Q Consensus 90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg-~~ldvF~V~~~ 141 (166)
.-|.|-+...|.||++++|+|+|+..|.||-+.-+--+.+- .+--+.++.+.
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gt 128 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGT 128 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEecc
Confidence 45788888899999999999999999999998877655554 22123555553
No 113
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=83.16 E-value=5 Score=25.68 Aligned_cols=42 Identities=24% Similarity=0.371 Sum_probs=29.8
Q ss_pred ecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEE-EEEEcC
Q 037628 98 TVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLD-VFVVDG 140 (166)
Q Consensus 98 ~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ld-vF~V~~ 140 (166)
.+|.+|.++++...|+..|+||.-..+.....+ ... +|.+..
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~-~~~is~~v~~ 51 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQNVSRDG-TTDISFTVPK 51 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCC-cEEEEEEecH
Confidence 578999999999999999999985544322232 233 366643
No 114
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=82.83 E-value=4.8 Score=34.90 Aligned_cols=51 Identities=20% Similarity=0.324 Sum_probs=38.7
Q ss_pred CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcC
Q 037628 90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDG 140 (166)
Q Consensus 90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~ 140 (166)
.-+.|.+..+|+||-|.++-+.|+.+|+|...-...-+..+.--=.|.++-
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~ 243 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDI 243 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEE
Confidence 478899999999999999999999999999865555444443333355543
No 115
>PRK06349 homoserine dehydrogenase; Provisional
Probab=80.49 E-value=6.2 Score=35.58 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=33.0
Q ss_pred eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeec
Q 037628 91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFST 127 (166)
Q Consensus 91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt 127 (166)
-+-|.+...|+||.+++|+++|+.+|.||.+..+-..
T Consensus 348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~ 384 (426)
T PRK06349 348 KYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGA 384 (426)
T ss_pred eEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccC
Confidence 4788899999999999999999999999998877543
No 116
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=80.36 E-value=7.5 Score=30.63 Aligned_cols=48 Identities=17% Similarity=0.183 Sum_probs=40.1
Q ss_pred CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEE
Q 037628 90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFV 137 (166)
Q Consensus 90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~ 137 (166)
..+.+.++-.||.|.++++-.++++.++||+.-++----+|.+=-+..
T Consensus 71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtls 118 (150)
T COG4492 71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLS 118 (150)
T ss_pred eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEE
Confidence 457889999999999999999999999999999996666775543333
No 117
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=77.96 E-value=4.4 Score=27.82 Aligned_cols=25 Identities=8% Similarity=0.235 Sum_probs=22.7
Q ss_pred ecCCCchHHHHHHHHHHCCCcEEEE
Q 037628 98 TVDKPKLLSQLSALLSDIGLNIREA 122 (166)
Q Consensus 98 ~~DrpGLfa~It~~La~~glNI~~A 122 (166)
.++.||+.++|...|+.+|+||---
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI 35 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLI 35 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEE
Confidence 5788999999999999999999854
No 118
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=77.95 E-value=2.4 Score=41.02 Aligned_cols=43 Identities=14% Similarity=0.072 Sum_probs=37.7
Q ss_pred EEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEc
Q 037628 92 HEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVD 139 (166)
Q Consensus 92 ~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~ 139 (166)
..+.|-+.||+|++..|+++|. .|..|++. |.....+|+|++.
T Consensus 632 ~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~-~~g~~~~~~~~~~ 674 (693)
T PRK00227 632 NILEVRTEDRRGALGALLGVLP----DLLWITAS-TPGATMIVQAALK 674 (693)
T ss_pred cEEEEEeCccccHHHHHHHHhh----hhhhHhhc-CCCcceEEEEEec
Confidence 5889999999999999999999 88889984 4666788999987
No 119
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=77.21 E-value=10 Score=34.11 Aligned_cols=40 Identities=10% Similarity=0.080 Sum_probs=34.2
Q ss_pred eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC
Q 037628 91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG 130 (166)
Q Consensus 91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg 130 (166)
-+.+.+..+|+||.|..+-+.|+.+|+|...-...-+..+
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~ 336 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGN 336 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCC
Confidence 5778888899999999999999999999997777655554
No 120
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=75.69 E-value=13 Score=22.22 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=21.9
Q ss_pred CCCchHHHHHHHHHHCCCcEEEEEE
Q 037628 100 DKPKLLSQLSALLSDIGLNIREAHV 124 (166)
Q Consensus 100 DrpGLfa~It~~La~~glNI~~A~i 124 (166)
+.+|.++++...|+.++++|.....
T Consensus 12 ~~~~~~~~i~~~l~~~~i~i~~i~~ 36 (60)
T cd04868 12 GTPGVAAKIFSALAEAGINVDMISQ 36 (60)
T ss_pred CCCCHHHHHHHHHHHCCCcEEEEEc
Confidence 4789999999999999999986554
No 121
>PRK08526 threonine dehydratase; Provisional
Probab=75.15 E-value=5.9 Score=35.56 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=33.3
Q ss_pred CCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEe
Q 037628 89 VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVF 125 (166)
Q Consensus 89 ~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~ 125 (166)
.....+.+.-||+||-|++++..+++.+.||.+-+-.
T Consensus 324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~ 360 (403)
T PRK08526 324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYD 360 (403)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEE
Confidence 4568999999999999999999999999999987663
No 122
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=69.67 E-value=11 Score=24.37 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=20.5
Q ss_pred cCCCchHHHHHHHHHHCCCcEE
Q 037628 99 VDKPKLLSQLSALLSDIGLNIR 120 (166)
Q Consensus 99 ~DrpGLfa~It~~La~~glNI~ 120 (166)
.+.||+++++..+|+..|+||.
T Consensus 12 ~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 12 RGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred cCCcCHHHHHHHHHHHCCCCEE
Confidence 3789999999999999999996
No 123
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=67.19 E-value=26 Score=21.30 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=25.1
Q ss_pred EEEEec---CCCchHHHHHHHHHHCCCcEEEEEE
Q 037628 94 VVFSTV---DKPKLLSQLSALLSDIGLNIREAHV 124 (166)
Q Consensus 94 I~I~~~---DrpGLfa~It~~La~~glNI~~A~i 124 (166)
|++.+. +++|+.+++...|+..+++|....+
T Consensus 3 i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 3 VSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 455443 7899999999999999999986554
No 124
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=66.61 E-value=20 Score=22.61 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=22.6
Q ss_pred cCCCchHHHHHHHHHHCCCcEEEEEE
Q 037628 99 VDKPKLLSQLSALLSDIGLNIREAHV 124 (166)
Q Consensus 99 ~DrpGLfa~It~~La~~glNI~~A~i 124 (166)
++.+|+++++...|+..|++|.--.+
T Consensus 12 ~~~~~~~~~i~~~l~~~~I~v~~i~~ 37 (66)
T cd04922 12 AGTPGVAATFFSALAKANVNIRAIAQ 37 (66)
T ss_pred CCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 57899999999999999999975544
No 125
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=63.27 E-value=26 Score=23.44 Aligned_cols=32 Identities=28% Similarity=0.409 Sum_probs=20.2
Q ss_pred HHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCC
Q 037628 110 ALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWP 142 (166)
Q Consensus 110 ~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~ 142 (166)
.....+|..+-+ +..+|.|||.+.+|.+....
T Consensus 3 ~~i~~~GY~~E~-h~V~T~DGYiL~l~RIp~~~ 34 (63)
T PF04083_consen 3 ELIEKHGYPCEE-HEVTTEDGYILTLHRIPPGK 34 (63)
T ss_dssp HHHHHTT---EE-EEEE-TTSEEEEEEEE-SBT
T ss_pred HHHHHcCCCcEE-EEEEeCCCcEEEEEEccCCC
Confidence 455667776655 44578999999999997655
No 126
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=62.43 E-value=39 Score=31.17 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=32.4
Q ss_pred eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeec
Q 037628 91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFST 127 (166)
Q Consensus 91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt 127 (166)
-+.|.++.+|+||-|+++-.+|+.+|+|+..-.....
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPs 52 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPS 52 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccC
Confidence 5788899999999999999999999999997665543
No 127
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=61.92 E-value=8.7 Score=26.26 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=22.2
Q ss_pred ecCCCchHHHHHHHHHHCCCcEEEE
Q 037628 98 TVDKPKLLSQLSALLSDIGLNIREA 122 (166)
Q Consensus 98 ~~DrpGLfa~It~~La~~glNI~~A 122 (166)
.++.+|+.+++.++|+.+|+||---
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI 35 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLV 35 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEE
Confidence 3677999999999999999999854
No 128
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=61.05 E-value=3.1 Score=29.53 Aligned_cols=44 Identities=20% Similarity=0.394 Sum_probs=33.7
Q ss_pred EEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCC-eEEEEEE
Q 037628 94 VVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDG-YSLDVFV 137 (166)
Q Consensus 94 I~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg-~~ldvF~ 137 (166)
|.++.+-||..|..+|-+|..+|.-|-+|.|--...+ .-..+|.
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR 47 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYR 47 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEE
Confidence 4578899999999999999999999999999433222 4444433
No 129
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=60.94 E-value=30 Score=21.89 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=22.4
Q ss_pred cCCCchHHHHHHHHHHCCCcEEEEEE
Q 037628 99 VDKPKLLSQLSALLSDIGLNIREAHV 124 (166)
Q Consensus 99 ~DrpGLfa~It~~La~~glNI~~A~i 124 (166)
++++|+.+++.+.|+..|+||.-..+
T Consensus 12 ~~~~~~~~~if~~L~~~~I~v~~i~q 37 (66)
T cd04919 12 KNMIGIAGRMFTTLADHRINIEMISQ 37 (66)
T ss_pred CCCcCHHHHHHHHHHHCCCCEEEEEe
Confidence 36799999999999999999976544
No 130
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=60.63 E-value=14 Score=39.04 Aligned_cols=33 Identities=24% Similarity=0.229 Sum_probs=30.7
Q ss_pred CCeEEEEEEecCCCchHHHHHHHHHHCCCcEEE
Q 037628 89 VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIRE 121 (166)
Q Consensus 89 ~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~ 121 (166)
.+.+.|.|+++|.|-|+..|++.|..+|++|..
T Consensus 15 ~~~TvI~IV~dDmPFLVDSV~~~L~r~gl~I~~ 47 (1528)
T PF05088_consen 15 SDHTVIEIVTDDMPFLVDSVRMELNRQGLTIHL 47 (1528)
T ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhCCCceEE
Confidence 347999999999999999999999999999984
No 131
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.76 E-value=10 Score=26.50 Aligned_cols=25 Identities=8% Similarity=0.353 Sum_probs=22.3
Q ss_pred ecCCCchHHHHHHHHHHCCCcEEEE
Q 037628 98 TVDKPKLLSQLSALLSDIGLNIREA 122 (166)
Q Consensus 98 ~~DrpGLfa~It~~La~~glNI~~A 122 (166)
.++.||..++|...|+.+|+||---
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI 35 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVV 35 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEE
Confidence 4678999999999999999999854
No 132
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=58.00 E-value=21 Score=23.61 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=29.8
Q ss_pred EEEEEe-cCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCC
Q 037628 93 EVVFST-VDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGW 141 (166)
Q Consensus 93 eI~I~~-~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~ 141 (166)
.|+|.. ++.||..++|.+.|+++|+||---.+. ... -+|.+...
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI~~~--~~~---isFtv~~~ 47 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLINVS--PEE---VIFTVDGE 47 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEEEec--CCC---EEEEEchh
Confidence 344443 456899999999999999999866332 222 23777653
No 133
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=56.74 E-value=17 Score=33.61 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=30.9
Q ss_pred EEEEEecCCCchHHHHHHHHHHCCCcEEEEEEe
Q 037628 93 EVVFSTVDKPKLLSQLSALLSDIGLNIREAHVF 125 (166)
Q Consensus 93 eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~ 125 (166)
.+.|.|.||.|+-..|...|..+++||..-.|.
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~ 34 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEID 34 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEc
Confidence 578999999999999999999999999998884
No 134
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=56.33 E-value=27 Score=21.52 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=22.3
Q ss_pred ecCCCchHHHHHHHHHHCCCcEEEEE
Q 037628 98 TVDKPKLLSQLSALLSDIGLNIREAH 123 (166)
Q Consensus 98 ~~DrpGLfa~It~~La~~glNI~~A~ 123 (166)
.++.+|+++++.+.|+..|++|.-..
T Consensus 10 ~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 10 MRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 35779999999999999999996544
No 135
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.75 E-value=49 Score=20.71 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.6
Q ss_pred cCCCchHHHHHHHHHHCCCcEEEEEE
Q 037628 99 VDKPKLLSQLSALLSDIGLNIREAHV 124 (166)
Q Consensus 99 ~DrpGLfa~It~~La~~glNI~~A~i 124 (166)
++.+|+.+++...|++.|++|.-..+
T Consensus 12 ~~~~~~~~~i~~~L~~~~i~v~~i~~ 37 (66)
T cd04916 12 KNTVGVSARATAALAKAGINIRMINQ 37 (66)
T ss_pred CCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 46799999999999999999976554
No 136
>PRK11898 prephenate dehydratase; Provisional
Probab=54.32 E-value=57 Score=27.91 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=31.6
Q ss_pred CeEEEEEEecC-CCchHHHHHHHHHHCCCcEEEEEEeecCC
Q 037628 90 PIHEVVFSTVD-KPKLLSQLSALLSDIGLNIREAHVFSTTD 129 (166)
Q Consensus 90 ~~~eI~I~~~D-rpGLfa~It~~La~~glNI~~A~i~tt~d 129 (166)
.-+.|.+..++ +||-|+++-+.|+.+|+|+..-...-..+
T Consensus 195 ~ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~ 235 (283)
T PRK11898 195 DKTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKT 235 (283)
T ss_pred CeEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCC
Confidence 34677777766 59999999999999999999766654333
No 137
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=54.11 E-value=21 Score=23.91 Aligned_cols=24 Identities=13% Similarity=0.307 Sum_probs=21.4
Q ss_pred ecCCCchHHHHHHHHHHCCCcEEE
Q 037628 98 TVDKPKLLSQLSALLSDIGLNIRE 121 (166)
Q Consensus 98 ~~DrpGLfa~It~~La~~glNI~~ 121 (166)
.++.+|+.+++.++|+.+|+||..
T Consensus 11 l~~~~g~~~~if~~L~~~~I~v~~ 34 (75)
T cd04912 11 MLGAHGFLAKVFEIFAKHGLSVDL 34 (75)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEE
Confidence 367799999999999999999964
No 138
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=54.05 E-value=50 Score=23.82 Aligned_cols=51 Identities=14% Similarity=0.192 Sum_probs=40.5
Q ss_pred eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEE-EEEcCC
Q 037628 91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDV-FVVDGW 141 (166)
Q Consensus 91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldv-F~V~~~ 141 (166)
-+.+.+..+++|+.+-++-++-.-.|..|...+.-.-.|+--..+ +.|+..
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~ 54 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSD 54 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCC
Confidence 378999999999999999999999999999877755445534444 777664
No 139
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.98 E-value=25 Score=21.68 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=21.8
Q ss_pred cCCCchHHHHHHHHHHCCCcEEEEE
Q 037628 99 VDKPKLLSQLSALLSDIGLNIREAH 123 (166)
Q Consensus 99 ~DrpGLfa~It~~La~~glNI~~A~ 123 (166)
++.+|+++++...|+.+|++|.-..
T Consensus 11 ~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 11 RSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred CCCccHHHHHHHHHHHCCCCEEEEE
Confidence 5679999999999999999997554
No 140
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=51.88 E-value=17 Score=23.06 Aligned_cols=24 Identities=13% Similarity=0.256 Sum_probs=21.4
Q ss_pred cCCCchHHHHHHHHHHCCCcEEEE
Q 037628 99 VDKPKLLSQLSALLSDIGLNIREA 122 (166)
Q Consensus 99 ~DrpGLfa~It~~La~~glNI~~A 122 (166)
.+++|+.+++...|+.+|+||.--
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i 34 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLI 34 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEE
Confidence 567899999999999999999854
No 141
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=51.60 E-value=50 Score=30.72 Aligned_cols=40 Identities=23% Similarity=0.170 Sum_probs=33.5
Q ss_pred CCCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeec
Q 037628 88 LVPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFST 127 (166)
Q Consensus 88 ~~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt 127 (166)
..+.+.|.+..+|+||-|+++-+.|+.+|+|+..-.....
T Consensus 28 ~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPs 67 (464)
T TIGR01270 28 GVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDS 67 (464)
T ss_pred CCceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcC
Confidence 3456788888899999999999999999999997655443
No 142
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=50.78 E-value=70 Score=21.04 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=23.0
Q ss_pred ecCCCchHHHHHHHHHHCCCcEEEEEE
Q 037628 98 TVDKPKLLSQLSALLSDIGLNIREAHV 124 (166)
Q Consensus 98 ~~DrpGLfa~It~~La~~glNI~~A~i 124 (166)
..+.+|+.+++..+|+.+|++|.-..+
T Consensus 11 ~~~~~~~~~~i~~~L~~~~I~v~~i~~ 37 (80)
T cd04921 11 MVGVPGIAARIFSALARAGINVILISQ 37 (80)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEe
Confidence 357789999999999999999976554
No 143
>PRK06635 aspartate kinase; Reviewed
Probab=49.17 E-value=29 Score=30.60 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=27.5
Q ss_pred CeEEEEEEe---cCCCchHHHHHHHHHHCCCcEEEE
Q 037628 90 PIHEVVFST---VDKPKLLSQLSALLSDIGLNIREA 122 (166)
Q Consensus 90 ~~~eI~I~~---~DrpGLfa~It~~La~~glNI~~A 122 (166)
+...+.+.+ ++.||.++++..+|+++|+||.-.
T Consensus 339 ~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i 374 (404)
T PRK06635 339 DIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMI 374 (404)
T ss_pred CeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence 445577765 789999999999999999999763
No 144
>PLN02317 arogenate dehydratase
Probab=47.07 E-value=79 Score=28.67 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=31.3
Q ss_pred eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEee
Q 037628 91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFS 126 (166)
Q Consensus 91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~t 126 (166)
-+.|.+..+|+||.|.++-++|+..|+|+..-....
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP 318 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRP 318 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeee
Confidence 477888889999999999999999999999765544
No 145
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.10 E-value=77 Score=20.49 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=21.3
Q ss_pred CCCchHHHHHHHHHHCCCcEEEEEE
Q 037628 100 DKPKLLSQLSALLSDIGLNIREAHV 124 (166)
Q Consensus 100 DrpGLfa~It~~La~~glNI~~A~i 124 (166)
..+|+++++..+|++.|+||.-..+
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~ 36 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQ 36 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEe
Confidence 4589999999999999999975544
No 146
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=43.79 E-value=39 Score=24.28 Aligned_cols=72 Identities=17% Similarity=0.177 Sum_probs=45.7
Q ss_pred CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCCCCCCCccccceeeEEEEEEe
Q 037628 90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEGSVLSPNVADFAMLWSGYRW 164 (166)
Q Consensus 90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~~~~f~~~a~~f~m~~~~~~~ 164 (166)
+...+.+.+.|... |..+..-|.+.|+.|..-.... ..+ ....|.+.+++|...++..-...++-+|.--||
T Consensus 59 ~~~hl~~~v~d~~~-~~~~~~~l~~~G~~i~~~~~~~-~~~-~~~~~~~~DPdG~~iei~~~~~~~~~~~~~~~~ 130 (131)
T cd08343 59 GLHHVAFEVESLDD-ILRAADRLAANGIQIEFGPGRH-GPG-NNLFLYFRDPDGNRVELSAEMYRIDPDWEPRRW 130 (131)
T ss_pred CeeEEEEEcCCHHH-HHHHHHHHHHcCCeeEECCCcc-CCC-CcEEEEEECCCCCEEEEEcCCcccCCCcCcccC
Confidence 45567777777554 4567777888999987422111 111 123466777877666666555666778988887
No 147
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=43.64 E-value=1.3e+02 Score=26.87 Aligned_cols=37 Identities=11% Similarity=-0.002 Sum_probs=30.8
Q ss_pred CCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEe
Q 037628 89 VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVF 125 (166)
Q Consensus 89 ~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~ 125 (166)
.....+.+.-|||||=|++++..+...+.||.+-+-.
T Consensus 323 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~ 359 (409)
T TIGR02079 323 GLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYT 359 (409)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 3467899999999999999999666777799976654
No 148
>PRK06635 aspartate kinase; Reviewed
Probab=43.45 E-value=59 Score=28.66 Aligned_cols=43 Identities=23% Similarity=0.286 Sum_probs=31.0
Q ss_pred ecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcC
Q 037628 98 TVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDG 140 (166)
Q Consensus 98 ~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~ 140 (166)
..++||.++++..+|++.|+||.-..+..+.+|..--.|.+..
T Consensus 270 ~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~ 312 (404)
T PRK06635 270 VPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR 312 (404)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH
Confidence 5678999999999999999999976554334333333456543
No 149
>PRK08639 threonine dehydratase; Validated
Probab=42.93 E-value=57 Score=29.25 Aligned_cols=37 Identities=11% Similarity=0.046 Sum_probs=30.5
Q ss_pred CCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEe
Q 037628 89 VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVF 125 (166)
Q Consensus 89 ~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~ 125 (166)
.....+.+.-|||||-|.+++..+...+.||.+-+-.
T Consensus 334 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~ 370 (420)
T PRK08639 334 GLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYL 370 (420)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence 4567899999999999999999666666699987654
No 150
>PF10719 ComFB: Late competence development protein ComFB; InterPro: IPR019657 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. The development of genetic competence in Bacillus subtilis is a highly regulated adaptive response to stationary-phase stress. For competence to develop, the transcriptional regulator, ComK, must be activated. ComK is required for the expression of genes encoding proteins that function in DNA uptake. In log-phase cultures, ComK is inactive in a complex with MecA and ClpC. The comS gene is induced in response to high culture cell density and nutritional stress and its product functions to release active ComK from the complex. ComK then stimulates the transcription initiation of its own gene as well as that of the late competence operons []. The comF locus has three open reading frames and is driven by a single sigma A-like promoter in front of comFORF1. It is dependent on early regulatory competence genes and is only expressed in competence medium. ComFORF1 is similar to an extensive family of ATP-dependent RNA/DNA helicases with closer similarity to the DEAD protein subfamily and to the PriA protein in Escherichia coli. ComFORF1 late gene product plays an essential role during the binding and uptake events involved in B. subtilis transformation []. ComFB is the second protein encoded within the late competence locus ComF []. The function of ComFB within late competence development is not known.
Probab=42.09 E-value=9.7 Score=26.64 Aligned_cols=13 Identities=8% Similarity=-0.003 Sum_probs=10.9
Q ss_pred ccccCccccccCC
Q 037628 3 FFHFGISYGLDVN 15 (166)
Q Consensus 3 f~rlP~rY~ldv~ 15 (166)
+|+|||||...-.
T Consensus 38 LN~LPPrYv~~~~ 50 (85)
T PF10719_consen 38 LNRLPPRYVVSEV 50 (85)
T ss_pred HcCCCCeEEEecC
Confidence 6899999987655
No 151
>PRK12483 threonine dehydratase; Reviewed
Probab=40.74 E-value=56 Score=30.59 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=30.1
Q ss_pred CCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEe
Q 037628 89 VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVF 125 (166)
Q Consensus 89 ~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~ 125 (166)
.....+.+.-|||||-|++++.+|+.. ||.+-+--
T Consensus 343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~ 377 (521)
T PRK12483 343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYR 377 (521)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEE
Confidence 456789999999999999999999988 99976654
No 152
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=40.17 E-value=29 Score=23.56 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.4
Q ss_pred CCCchHHHHHHHHHHCCCcEEEE
Q 037628 100 DKPKLLSQLSALLSDIGLNIREA 122 (166)
Q Consensus 100 DrpGLfa~It~~La~~glNI~~A 122 (166)
..+|+.++|.+.|+.+|+||---
T Consensus 13 ~~~g~~~~If~~la~~~I~vd~I 35 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVDLI 35 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEEEE
Confidence 34899999999999999999854
No 153
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.86 E-value=92 Score=19.30 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=22.3
Q ss_pred cCCCchHHHHHHHHHHCCCcEEEEEE
Q 037628 99 VDKPKLLSQLSALLSDIGLNIREAHV 124 (166)
Q Consensus 99 ~DrpGLfa~It~~La~~glNI~~A~i 124 (166)
++.+|+.+++.+.|++.|++|.-..+
T Consensus 12 ~~~~~~~~~i~~~L~~~~I~v~~i~q 37 (66)
T cd04924 12 RGTPGVAGRVFGALGKAGINVIMISQ 37 (66)
T ss_pred CCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 46789999999999999999975544
No 154
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=39.34 E-value=75 Score=20.80 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=20.5
Q ss_pred CCchHHHHHHHHHHCCCcEEEEEE
Q 037628 101 KPKLLSQLSALLSDIGLNIREAHV 124 (166)
Q Consensus 101 rpGLfa~It~~La~~glNI~~A~i 124 (166)
++|+.+++..+|+..|+|+.-..+
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~ 37 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQ 37 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEe
Confidence 689999999999999999975433
No 155
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=38.00 E-value=58 Score=28.68 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=27.0
Q ss_pred CCeEEEEEEec---CCCchHHHHHHHHHHCCCcEEE
Q 037628 89 VPIHEVVFSTV---DKPKLLSQLSALLSDIGLNIRE 121 (166)
Q Consensus 89 ~~~~eI~I~~~---DrpGLfa~It~~La~~glNI~~ 121 (166)
.+...|.+... ++||+++++..+|+..|+||..
T Consensus 335 ~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 335 EGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 34555667664 7899999999999999999983
No 156
>PF08753 NikR_C: NikR C terminal nickel binding domain; InterPro: IPR014864 NikR is a transcription factor that regulates nickel uptake. It consists of two dimeric DNA binding domains separated by a tetrameric regulatory domain that binds nickel. This protein corresponds to the C-terminal regulatory domain which contains four nickel binding sites at the tetramer interface []. ; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 2WVB_B 2WVD_C 3QSI_B 3LGH_A 2CAD_A ....
Probab=37.43 E-value=1.4e+02 Score=20.55 Aligned_cols=51 Identities=18% Similarity=0.104 Sum_probs=39.5
Q ss_pred eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCC
Q 037628 91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGW 141 (166)
Q Consensus 91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~ 141 (166)
++...+|-..++++-.+++..-.++.--|.+..-.--.+..+|.+|.+.++
T Consensus 2 g~it~vydh~~~~l~~~l~~iqH~~~~~I~s~~Hvhl~~~~ClEvivv~G~ 52 (78)
T PF08753_consen 2 GTITIVYDHHKRELSERLTEIQHEYHDIIISSLHVHLDHDNCLEVIVVRGP 52 (78)
T ss_dssp EEEEEEEETTSTTHHHHHHHHHHHTTTCEEEEEEEEESSSEEEEEEEEEEE
T ss_pred EEEEEEEcCCchhHHHHHHHHHHhCcCeEEEeeEEeecCCCeEEEEEEEcC
Confidence 356678888889999999999999887666444333345689999999875
No 157
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=36.47 E-value=1.3e+02 Score=26.53 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=28.6
Q ss_pred CeEEEEEE---ecCCCchHHHHHHHHHHCCCcEEEEEE
Q 037628 90 PIHEVVFS---TVDKPKLLSQLSALLSDIGLNIREAHV 124 (166)
Q Consensus 90 ~~~eI~I~---~~DrpGLfa~It~~La~~glNI~~A~i 124 (166)
+...|++. ..+++|+++++...|+++|+||..-.+
T Consensus 259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~ 296 (401)
T TIGR00656 259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQ 296 (401)
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEc
Confidence 45567777 678899999999999999999975433
No 158
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=36.27 E-value=1e+02 Score=31.43 Aligned_cols=68 Identities=10% Similarity=0.197 Sum_probs=48.0
Q ss_pred EEEEE---EecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCCC---CCCCccccceeeEE
Q 037628 92 HEVVF---STVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEG---SVLSPNVADFAMLW 159 (166)
Q Consensus 92 ~eI~I---~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~~---~~f~~~a~~f~m~~ 159 (166)
..+.+ -.+...|+|++++.++..+||.+..+.+-+-.+|..+-+|+|+...... .+..+++++..+.+
T Consensus 231 ~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~~~~~~~~~~~~~~~~~~ll~ 304 (1002)
T PTZ00324 231 FTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTADDNPDLSIEDRASLIRLLY 304 (1002)
T ss_pred EEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCCCCCcccccHHHHHHhcCeeE
Confidence 34555 2345569999999999999999999999888899777788887654321 23344455544443
No 159
>PLN02550 threonine dehydratase
Probab=32.20 E-value=65 Score=30.78 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=28.2
Q ss_pred eEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEe
Q 037628 91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVF 125 (166)
Q Consensus 91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~ 125 (166)
...+.+.-||+||-|++++.+|... ||.+-+--
T Consensus 417 ~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~ 449 (591)
T PLN02550 417 EAVLATFMPEEPGSFKRFCELVGPM--NITEFKYR 449 (591)
T ss_pred EEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEE
Confidence 4678899999999999999999986 99876553
No 160
>PRK09224 threonine dehydratase; Reviewed
Probab=32.15 E-value=92 Score=28.83 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=29.2
Q ss_pred CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEe
Q 037628 90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVF 125 (166)
Q Consensus 90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~ 125 (166)
....+.|.-|||||=|.+++..|+ +.||.+-+--
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr 360 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYR 360 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEE
Confidence 467888999999999999999998 7999986553
No 161
>PRK06291 aspartate kinase; Provisional
Probab=31.02 E-value=1.8e+02 Score=26.52 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=27.7
Q ss_pred CeEEEEEEec---CCCchHHHHHHHHHHCCCcEEEEEE
Q 037628 90 PIHEVVFSTV---DKPKLLSQLSALLSDIGLNIREAHV 124 (166)
Q Consensus 90 ~~~eI~I~~~---DrpGLfa~It~~La~~glNI~~A~i 124 (166)
+...|++... +.+|+++++.++|+.+|+||.--.+
T Consensus 320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq 357 (465)
T PRK06291 320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQ 357 (465)
T ss_pred CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEe
Confidence 3456677654 6899999999999999999986544
No 162
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=30.28 E-value=1.4e+02 Score=20.16 Aligned_cols=54 Identities=17% Similarity=0.054 Sum_probs=33.6
Q ss_pred CeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCCCC
Q 037628 90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEGS 146 (166)
Q Consensus 90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~~~ 146 (166)
+...+.+.+.+. +.++...|...|++|...-.......-....|++.+++|...
T Consensus 67 ~~~hi~~~~~~~---~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~v 120 (125)
T cd07253 67 GSDDLCLITEPP---IDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLI 120 (125)
T ss_pred CCceEEEEeccc---HHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEE
Confidence 445666676654 889999999999998765443221111124466777776443
No 163
>PRK08210 aspartate kinase I; Reviewed
Probab=29.56 E-value=1.3e+02 Score=26.66 Aligned_cols=35 Identities=9% Similarity=0.253 Sum_probs=28.0
Q ss_pred CeEEEEEEecCC-CchHHHHHHHHHHCCCcEEEEEE
Q 037628 90 PIHEVVFSTVDK-PKLLSQLSALLSDIGLNIREAHV 124 (166)
Q Consensus 90 ~~~eI~I~~~Dr-pGLfa~It~~La~~glNI~~A~i 124 (166)
+...|+|...+. +|.+++|.+.|+.+|+||--..+
T Consensus 270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~ 305 (403)
T PRK08210 270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINI 305 (403)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEe
Confidence 455666665554 99999999999999999997644
No 164
>KOG2972 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.01 E-value=1.2e+02 Score=26.42 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=23.1
Q ss_pred EEEEecCCCchHHHHHHHHHHCCCcEEEEEE
Q 037628 94 VVFSTVDKPKLLSQLSALLSDIGLNIREAHV 124 (166)
Q Consensus 94 I~I~~~DrpGLfa~It~~La~~glNI~~A~i 124 (166)
..++|. |.=+.+|+.-|.+.|++|.+..+
T Consensus 207 fkiv~e--~ssl~qV~~~Lr~~G~~i~d~~l 235 (276)
T KOG2972|consen 207 FKIVTE--PSSLNQVAHKLRSKGFEIKDSGL 235 (276)
T ss_pred eEEEec--cchHHHHHHHhhcCCceeecccc
Confidence 556665 66789999999999999996544
No 165
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=28.97 E-value=1e+02 Score=27.61 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=27.9
Q ss_pred CCeEEEEEEe---cCCCchHHHHHHHHHHCCCcEEEEE
Q 037628 89 VPIHEVVFST---VDKPKLLSQLSALLSDIGLNIREAH 123 (166)
Q Consensus 89 ~~~~eI~I~~---~DrpGLfa~It~~La~~glNI~~A~ 123 (166)
.+...|++.+ ++.||+.+++...|+.+|+||.-..
T Consensus 376 ~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 376 KGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred CCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 3455677753 5789999999999999999997543
No 166
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=28.87 E-value=64 Score=24.94 Aligned_cols=29 Identities=24% Similarity=0.356 Sum_probs=24.4
Q ss_pred ecCCCchHHHHHHHHHHCCCcEEEEEEee
Q 037628 98 TVDKPKLLSQLSALLSDIGLNIREAHVFS 126 (166)
Q Consensus 98 ~~DrpGLfa~It~~La~~glNI~~A~i~t 126 (166)
.-|-+|+++.|...|+.+|+-|---..|+
T Consensus 73 ~FgltGilasV~~pLsd~gigIFavStyd 101 (128)
T COG3603 73 DFGLTGILASVSQPLSDNGIGIFAVSTYD 101 (128)
T ss_pred cCCcchhhhhhhhhHhhCCccEEEEEecc
Confidence 35888999999999999999998655554
No 167
>PF02577 DNase-RNase: Bifunctional nuclease; InterPro: IPR003729 This entry describes proteins of unknown function. The structure has been determined for one member of this group, the hypothetical protein TM0160 from Thermotoga maritima, which was found to consist of a duplication of two beta(3)-alpha(2) structural repeats, forming a single barrel-like beta-sheet [].; PDB: 1SJ5_A 1VJL_A.
Probab=26.75 E-value=2.3e+02 Score=21.32 Aligned_cols=39 Identities=21% Similarity=0.289 Sum_probs=30.0
Q ss_pred cCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeE-EEEEE
Q 037628 99 VDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYS-LDVFV 137 (166)
Q Consensus 99 ~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~-ldvF~ 137 (166)
+-||-...-+..+|..+|..+....|..-.||.+ ..++.
T Consensus 49 ~~RP~thdLl~~~l~~lg~~v~~V~I~~~~dg~f~A~L~l 88 (135)
T PF02577_consen 49 PPRPLTHDLLSDLLEALGAEVERVVIDDLEDGVFYARLVL 88 (135)
T ss_dssp -SS--HHHHHHHHHHHTTEEEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHcCCEEEEEEEEEEECCEEEEEEEE
Confidence 5688888888899999999999999998889944 45544
No 168
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=26.63 E-value=1.3e+02 Score=27.86 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=29.5
Q ss_pred CCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEe
Q 037628 89 VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVF 125 (166)
Q Consensus 89 ~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~ 125 (166)
.....+.|.-|||||-|.+++.+|+. .||.+-+--
T Consensus 323 ~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr 357 (499)
T TIGR01124 323 QREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYR 357 (499)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEE
Confidence 34678888999999999999999997 699986654
No 169
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=26.43 E-value=95 Score=25.07 Aligned_cols=32 Identities=28% Similarity=0.229 Sum_probs=28.7
Q ss_pred eEEEEEEecCCCchHHHHHHHHHHCCCcEEEE
Q 037628 91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIREA 122 (166)
Q Consensus 91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~A 122 (166)
...+.|--+|+||-+-++-.=|+..|.||..-
T Consensus 5 ritldIEL~D~PGQLl~vLqPls~~g~NiItI 36 (170)
T COG2061 5 RITLDIELKDKPGQLLKVLQPLSKTGANIITI 36 (170)
T ss_pred EEEEEEEecCCCcchhhhhcchhhcCccEEEE
Confidence 36788889999999999999999999999964
No 170
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.51 E-value=84 Score=20.30 Aligned_cols=22 Identities=5% Similarity=-0.023 Sum_probs=18.5
Q ss_pred cCCCchHHHHHHHHHHCCCcEE
Q 037628 99 VDKPKLLSQLSALLSDIGLNIR 120 (166)
Q Consensus 99 ~DrpGLfa~It~~La~~glNI~ 120 (166)
++.+|+.+++..+|+..++++.
T Consensus 11 ~~~~gv~~~~~~~L~~~~i~~i 32 (63)
T cd04920 11 RSLLHKLGPALEVFGKKPVHLV 32 (63)
T ss_pred ccCccHHHHHHHHHhcCCceEE
Confidence 3679999999999998877664
No 171
>PRK08841 aspartate kinase; Validated
Probab=25.22 E-value=1.2e+02 Score=27.12 Aligned_cols=33 Identities=12% Similarity=0.358 Sum_probs=29.7
Q ss_pred CCeEEEEEEecCCCchHHHHHHHHHHCCCcEEE
Q 037628 89 VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIRE 121 (166)
Q Consensus 89 ~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~ 121 (166)
.+...|.+.....||+.+++..+|+..|+||..
T Consensus 316 ~~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~ 348 (392)
T PRK08841 316 ESVSLLTLVGLEANGMVEHACNLLAQNGIDVRQ 348 (392)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHhCCCCEEE
Confidence 457789999999999999999999999999964
No 172
>PRK08210 aspartate kinase I; Reviewed
Probab=25.08 E-value=1.4e+02 Score=26.39 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=25.9
Q ss_pred CeEEEEEEe---cCCCchHHHHHHHHHHCCCcEEE
Q 037628 90 PIHEVVFST---VDKPKLLSQLSALLSDIGLNIRE 121 (166)
Q Consensus 90 ~~~eI~I~~---~DrpGLfa~It~~La~~glNI~~ 121 (166)
+...|.+.. +++||+++++..+|++.|+||..
T Consensus 338 ~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 338 NCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred CcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 445555655 47899999999999999999973
No 173
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=24.63 E-value=3.1e+02 Score=23.11 Aligned_cols=38 Identities=3% Similarity=0.017 Sum_probs=31.7
Q ss_pred eEEEEEEecCCCc--hHHHHHHHHHHCCCcEEEEEEeecC
Q 037628 91 IHEVVFSTVDKPK--LLSQLSALLSDIGLNIREAHVFSTT 128 (166)
Q Consensus 91 ~~eI~I~~~DrpG--Lfa~It~~La~~glNI~~A~i~tt~ 128 (166)
.+.+.+.|.+.++ +...+-..|...++.+.+.++....
T Consensus 142 ~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~ 181 (225)
T PRK15385 142 RYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQ 181 (225)
T ss_pred EEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecC
Confidence 5788889988775 5899999999999999999996543
No 174
>PRK01002 nickel responsive regulator; Provisional
Probab=22.26 E-value=3.7e+02 Score=20.66 Aligned_cols=52 Identities=19% Similarity=0.163 Sum_probs=39.0
Q ss_pred eEEEEEEecCCCchHHHHHHHHHHCCCcEEE-EEEeecCCCeEEEEEEEcCCCC
Q 037628 91 IHEVVFSTVDKPKLLSQLSALLSDIGLNIRE-AHVFSTTDGYSLDVFVVDGWPV 143 (166)
Q Consensus 91 ~~eI~I~~~DrpGLfa~It~~La~~glNI~~-A~i~tt~dg~~ldvF~V~~~~~ 143 (166)
++...+|-+++.++-.+++.+..++.-.|.. .+++- ..+.++.++.|.++..
T Consensus 58 GvItivydh~~~~l~~~l~~iqH~~~~~Iiss~Hvhl-d~~~ClEvivv~G~~~ 110 (141)
T PRK01002 58 GTISVIYDHHSTGVMEKLTDIQHDYSDLIVASLHIHL-DHDHCLEVIVVRGDAK 110 (141)
T ss_pred EEEEEEEeccchhHHHHHHHHHHhccCeEEEeeeeec-CCCcEEEEEEEEcCHH
Confidence 4455588888889999999999998776663 44543 4457999999987643
No 175
>PRK09034 aspartate kinase; Reviewed
Probab=21.33 E-value=1.4e+02 Score=27.27 Aligned_cols=33 Identities=12% Similarity=0.177 Sum_probs=26.4
Q ss_pred CeEEEEEE---ecCCCchHHHHHHHHHHCCCcEEEE
Q 037628 90 PIHEVVFS---TVDKPKLLSQLSALLSDIGLNIREA 122 (166)
Q Consensus 90 ~~~eI~I~---~~DrpGLfa~It~~La~~glNI~~A 122 (166)
+...|++. .++++|+.++|.+.|+++|+||.--
T Consensus 307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i 342 (454)
T PRK09034 307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM 342 (454)
T ss_pred CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE
Confidence 34555555 4678999999999999999999863
No 176
>PRK04460 nickel responsive regulator; Provisional
Probab=21.05 E-value=3.9e+02 Score=20.55 Aligned_cols=52 Identities=19% Similarity=0.178 Sum_probs=38.9
Q ss_pred CeEEEEEEecCCCchHHHHHHHHHHCCCcEE-EEEEeecCCCeEEEEEEEcCCC
Q 037628 90 PIHEVVFSTVDKPKLLSQLSALLSDIGLNIR-EAHVFSTTDGYSLDVFVVDGWP 142 (166)
Q Consensus 90 ~~~eI~I~~~DrpGLfa~It~~La~~glNI~-~A~i~tt~dg~~ldvF~V~~~~ 142 (166)
-++...+|-..+.++..+++.+-..+.-.|. ..|++- .+..+|.++.+.++.
T Consensus 54 ~Gvi~vvYdH~~~~l~~~l~~iqH~~~d~Iiss~HvHl-d~~~ClEvivv~G~~ 106 (137)
T PRK04460 54 AGTVTLVYNHHVSDLAQKLTEIQHDHHDEIISSLHVHL-DHHNCLEVLVLKGKA 106 (137)
T ss_pred EEEEEEEEeCCcchHHHHHHHHHHhhhceEEEEEEEec-CCCcEEEEEEEEcCH
Confidence 3556668888888999999999988765555 445543 334799999998863
No 177
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=20.96 E-value=2.8e+02 Score=18.77 Aligned_cols=51 Identities=22% Similarity=0.145 Sum_probs=31.4
Q ss_pred CCeEEEEEEecCCCchHHHHHHHHHHCCCcEEEEEEeecCCCeEEEEEEEcCCCCC
Q 037628 89 VPIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVE 144 (166)
Q Consensus 89 ~~~~eI~I~~~DrpGLfa~It~~La~~glNI~~A~i~tt~dg~~ldvF~V~~~~~~ 144 (166)
.+.+.+.+.+.|...+ .++..-+..+|.+|...-. ....|. .+++.+++|.
T Consensus 58 ~~~~~~~~~v~~~~~~-~~~~~~~~~~g~~v~~~~~-~~~~g~---~~~~~DPdGn 108 (114)
T cd07261 58 GGGSELAFMVDDGAAV-DALYAEWQAKGVKIIQEPT-EMDFGY---TFVALDPDGH 108 (114)
T ss_pred CCceEEEEEcCCHHHH-HHHHHHHHHCCCeEecCcc-ccCCcc---EEEEECCCCC
Confidence 3557788888886666 4455556679999875322 223332 4566677663
No 178
>PRK09034 aspartate kinase; Reviewed
Probab=20.08 E-value=3.9e+02 Score=24.31 Aligned_cols=36 Identities=8% Similarity=0.166 Sum_probs=29.1
Q ss_pred CCeEEEEEEe---cCCCchHHHHHHHHHHCCCcEEEEEE
Q 037628 89 VPIHEVVFST---VDKPKLLSQLSALLSDIGLNIREAHV 124 (166)
Q Consensus 89 ~~~~eI~I~~---~DrpGLfa~It~~La~~glNI~~A~i 124 (166)
.+...|.+.. ++.+|+.+++..+|+.+|+||.-..+
T Consensus 383 ~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq 421 (454)
T PRK09034 383 HDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQ 421 (454)
T ss_pred CCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 3566777753 57899999999999999999986544
Done!