BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037631
(388 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LLI|A Chain A, Low Resolution Structure Of Rna-Binding Subunit Of The
Tramp Complex
Length = 124
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 21/119 (17%)
Query: 256 CKHCGREGHRKFYCPEL---KDGLTD--------RGFKCRLCGERGHNRRTCPKSRLSYH 304
C +C + GH K CP + G TD + +C C E GH R CP
Sbjct: 7 CNNCSQRGHLKKDCPHIICSYCGATDDHYSRHCPKAIQCSKCDEVGHYRSQCPHKW---- 62
Query: 305 NGTVSKHHRCQICRQRGHNRRTCPQVTGEKRHDNNGQKHIP-TSASKTCTCRFCGEKGH 362
K +C +C+ + H++ CP + ++ +K P T C CG KGH
Sbjct: 63 -----KKVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGH 116
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 282 KCRLCGERGHNRRTCPKSRLSYHNGTVSKHHR-------CQICRQRGHNRRTCPQ 329
KC C +RGH ++ CP SY T + R C C + GH R CP
Sbjct: 6 KCNNCSQRGHLKKDCPHIICSYCGATDDHYSRHCPKAIQCSKCDEVGHYRSQCPH 60
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 313 RCQICRQRGHNRRTCPQVTGEK--RHDNNGQKHIPTSASKTCTCRFCGEKGHNIRTCPRR 370
+C C QRGH ++ CP + D++ +H P K C C E GH CP +
Sbjct: 6 KCNNCSQRGHLKKDCPHIICSYCGATDDHYSRHCP----KAIQCSKCDEVGHYRSQCPHK 61
>pdb|2IHX|A Chain A, Solution Structure Of The Rous Sarcoma Virus Nucleocapsid
Protein:upsi Rna Packaging Signal Complex
Length = 61
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 283 CRLCGERGHNRRTCPKSRLSYHNGTVSKHHRCQICRQRGHNRRTCPQVTGEKRHDNNGQK 342
C CG GH + CPK R S ++ RCQ+C GHN + C KR N GQ+
Sbjct: 7 CYTCGSPGHYQAQCPKKRKSGNS-----RERCQLCNGMGHNAKQC-----RKRDGNQGQR 56
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 252 VRFYCKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCPK 298
R C CG GH + CP+ + R +C+LC GHN + C K
Sbjct: 3 ARGLCYTCGSPGHYQAQCPKKRKSGNSR-ERCQLCNGMGHNAKQCRK 48
>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
pdb|3FI9|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
Length = 343
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 53/144 (36%), Gaps = 33/144 (22%)
Query: 246 SIAMKGVRFYCKHCGREGHRKFYCPELKDGLTDRGFKCRLCG---ERGHNRRTCPKSRLS 302
++ ++GV +HCG EG + ++K+ LTD + G + G R K
Sbjct: 44 AVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKG--- 100
Query: 303 YHNGTVSKHHRCQICRQRGHNRRT-CPQVTGEKRHDNNGQKHI-----PTSASKTCTCRF 356
+I Q G + ++ CP KH+ P + T +
Sbjct: 101 ----------NAEIAAQLGKDIKSYCPDC-----------KHVIIIFNPADITGLVTLIY 139
Query: 357 CGEKGHNIRTCPRRNLEQLKSEEA 380
G K + T + +L+SE A
Sbjct: 140 SGLKPSQVTTLAGLDSTRLQSELA 163
>pdb|3IQB|A Chain A, Tt I75fL144F H-Nox
Length = 188
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 110 GKGIMTCRQCSGDCVIWEESVDEQPWENAHSVSPLKVKEDDEVDNLEIKVGVK 162
G I T R G+ V+ +ES+ WE ++PL+ +DDEV + KV K
Sbjct: 7 GTWIKTLRDLYGNDVV-DESLKSVGWEPDRVITPLEDIDDDEVRRIFAKVSEK 58
>pdb|3SJ5|A Chain A, I5f Mutant Structure Of T. Tengcongensis H-Nox
pdb|3SJ5|B Chain B, I5f Mutant Structure Of T. Tengcongensis H-Nox
Length = 188
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 110 GKGIMTCRQCSGDCVIWEESVDEQPWENAHSVSPLKVKEDDEVDNLEIKVGVK 162
G I T R G+ V+ +ES+ WE ++PL+ +DDEV + KV K
Sbjct: 7 GTWIKTLRDLYGNDVV-DESLKSVGWEPDRVITPLEDIDDDEVRRIFAKVSEK 58
>pdb|1U4H|A Chain A, Crystal Structure Of An Oxygen Binding H-Nox Domain
Related To Soluble Guanylate Cyclases (Oxygen Complex)
pdb|1U4H|B Chain B, Crystal Structure Of An Oxygen Binding H-Nox Domain
Related To Soluble Guanylate Cyclases (Oxygen Complex)
Length = 188
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 110 GKGIMTCRQCSGDCVIWEESVDEQPWENAHSVSPLKVKEDDEVDNLEIKVGVK 162
G I T R G+ V+ +ES+ WE ++PL+ +DDEV + KV K
Sbjct: 7 GTWIKTLRDLYGNDVV-DESLKSVGWEPDRVITPLEDIDDDEVRRIFAKVSEK 58
>pdb|3NVR|A Chain A, Modulating Heme Redox Potential Through Protein-Induced
Porphyrin Distortion
pdb|3NVR|B Chain B, Modulating Heme Redox Potential Through Protein-Induced
Porphyrin Distortion
Length = 188
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 110 GKGIMTCRQCSGDCVIWEESVDEQPWENAHSVSPLKVKEDDEVDNLEIKVGVK 162
G I T R G+ V+ +ES+ WE ++PL+ +DDEV + KV K
Sbjct: 7 GTWIKTLRDLYGNDVV-DESLKSVGWEPDRVITPLEDIDDDEVRRIFAKVSEK 58
>pdb|1XBN|A Chain A, Crystal Structure Of A Bacterial Nitric Oxide Sensor: An
Ortholog Of Mammalian Soluble Guanylate Cyclase Heme
Domain
Length = 195
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 110 GKGIMTCRQCSGDCVIWEESVDEQPWENAHSVSPLKVKEDDEVDNLEIKV 159
G I T R G+ V+ +ES+ WE ++PL+ +DDEV + KV
Sbjct: 7 GTWIKTLRDLYGNDVV-DESLKSVGWEPDRVITPLEDIDDDEVRRIFAKV 55
>pdb|1U55|A Chain A, Crystal Structure Of An Oxygen Binding H-nox Domain
Related To Soluble Guanylate Cyclases (oxygen Complex)
pdb|1U55|B Chain B, Crystal Structure Of An Oxygen Binding H-nox Domain
Related To Soluble Guanylate Cyclases (oxygen Complex)
pdb|1U56|A Chain A, Crystal Structure Of An Oxygen Binding H-Nox Domain
Related To Soluble Guanylate Cyclases (Water-Ligated,
Ferric Form)
pdb|1U56|B Chain B, Crystal Structure Of An Oxygen Binding H-Nox Domain
Related To Soluble Guanylate Cyclases (Water-Ligated,
Ferric Form)
pdb|3M0B|A Chain A, Ru-Porphyrin Protein Scaffolds For Sensing O2
pdb|3TF0|A Chain A, Crystal Structure Of An H-Nox Protein From T.
Tengcongensis
pdb|3TF0|B Chain B, Crystal Structure Of An H-Nox Protein From T.
Tengcongensis
pdb|3TF1|A Chain A, Crystal Structure Of An H-Nox Protein From T.
Tengcongensis Under 6 Atm Of Xenon
pdb|3TF1|B Chain B, Crystal Structure Of An H-Nox Protein From T.
Tengcongensis Under 6 Atm Of Xenon
pdb|4IT2|A Chain A, Mn(iii)-ppix Bound Tt H-nox
pdb|4IT2|B Chain B, Mn(iii)-ppix Bound Tt H-nox
Length = 188
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 110 GKGIMTCRQCSGDCVIWEESVDEQPWENAHSVSPLKVKEDDEVDNLEIKVGVK 162
G I T R G+ V+ +ES+ WE ++PL+ +DDEV + KV K
Sbjct: 7 GTWIKTLRDLYGNDVV-DESLKSVGWEPDRVITPLEDIDDDEVRRIFAKVSEK 58
>pdb|3NVU|A Chain A, Modulating Heme Redox Potential Through Protein-Induced
Porphyrin Distortion
pdb|3NVU|B Chain B, Modulating Heme Redox Potential Through Protein-Induced
Porphyrin Distortion
Length = 188
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 110 GKGIMTCRQCSGDCVIWEESVDEQPWENAHSVSPLKVKEDDEVDNLEIKVGVK 162
G I T R G+ V+ +ES+ WE ++PL+ +DDEV + KV K
Sbjct: 7 GTWIKTLRDLYGNDVV-DESLKSVGWEPDRVITPLEDIDDDEVRRIFAKVSEK 58
>pdb|3LAH|A Chain A, Structural Insights Into The Molecular Mechanism Of H-Nox
Activation
pdb|3LAH|B Chain B, Structural Insights Into The Molecular Mechanism Of H-Nox
Activation
pdb|3LAI|A Chain A, Structural Insights Into The Molecular Mechanism Of H-Nox
Activation
pdb|3LAI|B Chain B, Structural Insights Into The Molecular Mechanism Of H-Nox
Activation
pdb|3LAI|C Chain C, Structural Insights Into The Molecular Mechanism Of H-Nox
Activation
Length = 188
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 110 GKGIMTCRQCSGDCVIWEESVDEQPWENAHSVSPLKVKEDDEVDNLEIKV 159
G I T R G+ V+ +ES+ WE ++PL+ +DDEV + KV
Sbjct: 7 GTWIKTLRDLYGNDVV-DESLKSVGWEPDRVITPLEDIDDDEVRRIFAKV 55
>pdb|3EEE|A Chain A, Probing The Function Of Heme Distortion In The H-Nox
Family
pdb|3EEE|B Chain B, Probing The Function Of Heme Distortion In The H-Nox
Family
pdb|3EEE|C Chain C, Probing The Function Of Heme Distortion In The H-Nox
Family
pdb|3EEE|D Chain D, Probing The Function Of Heme Distortion In The H-Nox
Family
Length = 188
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 110 GKGIMTCRQCSGDCVIWEESVDEQPWENAHSVSPLKVKEDDEVDNLEIKV 159
G I T R G+ V+ +ES+ WE ++PL+ +DDEV + KV
Sbjct: 7 GTWIKTLRDLYGNDVV-DESLKSVGWEPDRVITPLEDIDDDEVRRIFAKV 55
>pdb|3NYB|B Chain B, Structure And Function Of The Polymerase Core Of Tramp, A
Rna Surveillance Complex
Length = 83
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 313 RCQICRQRGHNRRTCPQVTGEKRHDNNGQKHIP-TSASKTCTCRFCGEKGHNIRTCPRRN 371
+C +C+ + H++ CP + ++ +K P T C CG KGH C +
Sbjct: 7 QCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGDDCKEKR 66
Query: 372 LEQLKSEEASQQASS 386
++ +E+ S S
Sbjct: 67 SSRVPNEDGSAFTGS 81
>pdb|2ELI|A Chain A, Solution Structure Of The Second Phorbol
EstersDIACYLGLYCEROL BINDING DOMAIN OF HUMAN PROTEIN
Kinase C Alpha Type
Length = 85
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 10/57 (17%)
Query: 237 SDPENRQKRSIAMKGVRFYCKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNR 293
DP ++ K I G +C HCG L GL +G KC C H +
Sbjct: 12 DDPRSKHKFKIHTYGSPTFCDHCG----------SLLYGLIHQGMKCDTCDMNVHKQ 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,856,304
Number of Sequences: 62578
Number of extensions: 500385
Number of successful extensions: 953
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 881
Number of HSP's gapped (non-prelim): 99
length of query: 388
length of database: 14,973,337
effective HSP length: 101
effective length of query: 287
effective length of database: 8,652,959
effective search space: 2483399233
effective search space used: 2483399233
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)