BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037631
(388 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=4 SV=1
Length = 271
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 54/140 (38%), Gaps = 28/140 (20%)
Query: 256 CKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCPKSRLSYHNGTV------- 308
C++CG+EGH CPE +R C CGE GH R CP S G +
Sbjct: 18 CRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGE 77
Query: 309 ----------------SKHHRCQICRQRGHNRRTCPQVTGEKRHDNNGQKHIPTSA---- 348
+K C C Q GH R CP G R GQK + A
Sbjct: 78 AGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSR-GGYGQKRGRSGAQGGY 136
Query: 349 SKTCTCRFCGEKGHNIRTCP 368
S TC CG+ GH R CP
Sbjct: 137 SGDRTCYKCGDAGHISRDCP 156
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 50/131 (38%), Gaps = 21/131 (16%)
Query: 256 CKHCGREGHRKFYCPELKDGLTDRGFK-CRLCGERGHNRRTCPKSRLSYHNGTVSKHHRC 314
C CG GH CP + G + G + C CG+ GH R CP + Y + + +C
Sbjct: 142 CYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGY---SGAGDRKC 198
Query: 315 QICRQRGHNRRTCPQVTGEKRHDNNGQK-HIPTSASKTC----------------TCRFC 357
C + GH R CP D K P S+ C TC C
Sbjct: 199 YKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYKC 258
Query: 358 GEKGHNIRTCP 368
GE GH R CP
Sbjct: 259 GEAGHISRDCP 269
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 51/137 (37%), Gaps = 33/137 (24%)
Query: 248 AMKGVRFYCKHCGREGHRKFYCPELKDGL------------TDRGFK----CRLCGERGH 291
A KG F C CG+EGH CP + G G+ C CG+ GH
Sbjct: 93 AAKG--FECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGH 150
Query: 292 NRRTCPKSRLSYHNGTVSKHHRCQICRQRGHNRRTCPQVTGEKRHDNNGQKHIPTSASKT 351
R CP + Y + + C C GH R CP NGQ + +
Sbjct: 151 ISRDCPNGQGGY---SGAGDRTCYKCGDAGHISRDCP----------NGQGGYSGAGDRK 197
Query: 352 CTCRFCGEKGHNIRTCP 368
C CGE GH R CP
Sbjct: 198 CY--KCGESGHMSRECP 212
Score = 36.6 bits (83), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 17/92 (18%)
Query: 277 TDRGFKCRLCGERGHNRRTCPKSRLSYHNGTVSKHHRCQICRQRGHNRRTCPQVTGEKRH 336
T+ CR CG+ GH R CP++ + + C C + GH R CP E R
Sbjct: 12 TESSTSCRNCGKEGHYARECPEADSKGDERSTT----CFRCGEEGHMSRECPN---EAR- 63
Query: 337 DNNGQKHIPTSASKTCTCRFCGEKGHNIRTCP 368
+ A+ TC CGE GH R CP
Sbjct: 64 ---------SGAAGAMTCFRCGEAGHMSRDCP 86
>sp|P03354|POL_RSVP Gag-Pro-Pol polyprotein OS=Rous sarcoma virus (strain Prague C)
GN=gag-pro-pol PE=1 SV=2
Length = 1603
Score = 47.4 bits (111), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 14/74 (18%)
Query: 273 KDGLTDRGFK----CRLCGERGHNRRTCPKSRLSYHNGTVSKHHRCQICRQRGHNRRTCP 328
+DG T G + C CG GH + CPK R S ++ RCQ+C GHN + C
Sbjct: 495 RDGQTGSGGRARGLCYTCGSPGHYQAQCPKKRKSGNS-----RERCQLCNGMGHNAKQC- 548
Query: 329 QVTGEKRHDNNGQK 342
KR N GQ+
Sbjct: 549 ----RKRDGNQGQR 558
Score = 38.9 bits (89), Expect = 0.077, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 207 LHAQRVAAIKKAKGTAAARKHASETLKAFFSDPENRQKRSIAMKGVRFYCKHCGREGHRK 266
L Q+ A + +G AAA A + L + E R ++ + R C CG GH +
Sbjct: 462 LDRQKTAPLTD-QGIAAAMSSAIQPLIMAVVNRE-RDGQTGSGGRARGLCYTCGSPGHYQ 519
Query: 267 FYCPELKDGLTDRGFKCRLCGERGHNRRTCPK 298
CP+ + R +C+LC GHN + C K
Sbjct: 520 AQCPKKRKSGNSRE-RCQLCNGMGHNAKQCRK 550
>sp|O92956|POL_RSVSB Gag-Pro-Pol polyprotein OS=Rous sarcoma virus (strain
Schmidt-Ruppin B) GN=gag-pro-pol PE=1 SV=2
Length = 1603
Score = 46.2 bits (108), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 14/74 (18%)
Query: 273 KDGLTDRGFK----CRLCGERGHNRRTCPKSRLSYHNGTVSKHHRCQICRQRGHNRRTCP 328
+DG T G + C CG GH + CPK R S ++ RCQ+C GHN + C
Sbjct: 495 RDGQTGSGGRARRLCYTCGSPGHYQAQCPKKRKSGNS-----RERCQLCDGMGHNAKQC- 548
Query: 329 QVTGEKRHDNNGQK 342
+R N GQ+
Sbjct: 549 ----RRRDSNQGQR 558
Score = 38.9 bits (89), Expect = 0.076, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 207 LHAQRVAAIKKAKGTAAARKHASETLKAFFSDPENRQKRSIAMKGVRFYCKHCGREGHRK 266
L Q++A + +G AAA A + L + E R ++ + R C CG GH +
Sbjct: 462 LDRQKIAPLTD-QGIAAAMSSAIQPLVMAVVNRE-RDGQTGSGGRARRLCYTCGSPGHYQ 519
Query: 267 FYCPELKDGLTDRGFKCRLCGERGHNRRTC 296
CP+ + R +C+LC GHN + C
Sbjct: 520 AQCPKKRKSGNSRE-RCQLCDGMGHNAKQC 548
Score = 33.9 bits (76), Expect = 1.9, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 14/61 (22%)
Query: 314 CQICRQRGHNRRTCPQVTGEKRHDNNGQKHIPTSASKTCTCRFCGEKGHNIRTCPRRNLE 373
C C GH + CP+ KR N ++ C+ C GHN + C RR+
Sbjct: 509 CYTCGSPGHYQAQCPK----KRKSGNSRER----------CQLCDGMGHNAKQCRRRDSN 554
Query: 374 Q 374
Q
Sbjct: 555 Q 555
>sp|Q04095|POL_RSVSA Gag-Pro-Pol polyprotein OS=Avian leukosis virus RSA GN=gag-pro-pol
PE=3 SV=2
Length = 1603
Score = 45.8 bits (107), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 14/74 (18%)
Query: 273 KDGLTDRGFK----CRLCGERGHNRRTCPKSRLSYHNGTVSKHHRCQICRQRGHNRRTCP 328
+DG T G + C CG GH + CPK R S ++ RCQ+C GHN + C
Sbjct: 495 RDGQTGSGGRARGLCYTCGSPGHYQAQCPKKRKSGNS-----RERCQLCDGMGHNAKQC- 548
Query: 329 QVTGEKRHDNNGQK 342
+R N GQ+
Sbjct: 549 ----RRRDGNQGQR 558
Score = 38.5 bits (88), Expect = 0.078, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 207 LHAQRVAAIKKAKGTAAARKHASETLKAFFSDPENRQKRSIAMKGVRFYCKHCGREGHRK 266
L Q++A + +G AAA A + L + E R ++ + R C CG GH +
Sbjct: 462 LDRQKIAPLTD-QGIAAAMSSAIQPLVMAVVNRE-RDGQTGSGGRARGLCYTCGSPGHYQ 519
Query: 267 FYCPELKDGLTDRGFKCRLCGERGHNRRTC 296
CP+ + R +C+LC GHN + C
Sbjct: 520 AQCPKKRKSGNSRE-RCQLCDGMGHNAKQC 548
Score = 33.5 bits (75), Expect = 2.5, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 14/61 (22%)
Query: 314 CQICRQRGHNRRTCPQVTGEKRHDNNGQKHIPTSASKTCTCRFCGEKGHNIRTCPRRNLE 373
C C GH + CP+ KR N ++ C+ C GHN + C RR+
Sbjct: 509 CYTCGSPGHYQAQCPK----KRKSGNSRER----------CQLCDGMGHNAKQCRRRDGN 554
Query: 374 Q 374
Q
Sbjct: 555 Q 555
>sp|Q4WXV6|BBP_ASPFU Branchpoint-bridging protein OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=bbp PE=3
SV=1
Length = 566
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 256 CKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCP 297
C++CG+ GHRK+ CPE ++ + CR+CG GH R CP
Sbjct: 306 CQNCGQIGHRKYDCPEQRNFTAN--IICRVCGNAGHMARDCP 345
Score = 37.0 bits (84), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 17/72 (23%)
Query: 301 LSYHNGTV--SKHHRCQICRQRGHNRRTCPQVTGEKRHDNNGQKHIPTSASKTCTCRFCG 358
L+ NGT+ ++ CQ C Q GH + CP+ Q++ + CR CG
Sbjct: 291 LAALNGTLRDDENQACQNCGQIGHRKYDCPE-----------QRNF----TANIICRVCG 335
Query: 359 EKGHNIRTCPRR 370
GH R CP R
Sbjct: 336 NAGHMARDCPDR 347
Score = 32.0 bits (71), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 278 DRGFKCRLCGERGHNRRTCPKSRLSYHNGTVSKHHRCQICRQRGHNRRTCP 328
D C+ CG+ GH + CP+ R + + C++C GH R CP
Sbjct: 301 DENQACQNCGQIGHRKYDCPEQR------NFTANIICRVCGNAGHMARDCP 345
>sp|Q8NIW7|BBP_NEUCR Branchpoint-bridging protein OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=bpb-1 PE=3 SV=1
Length = 607
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 256 CKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCP 297
C++CG+ GHRK+ CPE ++ + CR+CG GH R CP
Sbjct: 321 CQNCGQIGHRKYDCPEKQNYTAN--IICRVCGNAGHMARDCP 360
Score = 36.2 bits (82), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 17/72 (23%)
Query: 301 LSYHNGTV--SKHHRCQICRQRGHNRRTCPQVTGEKRHDNNGQKHIPTSASKTCTCRFCG 358
L+ NGT+ ++ CQ C Q GH + CP+ + + CR CG
Sbjct: 306 LAALNGTLRDDENQACQNCGQIGHRKYDCPEKQ---------------NYTANIICRVCG 350
Query: 359 EKGHNIRTCPRR 370
GH R CP R
Sbjct: 351 NAGHMARDCPDR 362
>sp|P03322|GAG_RSVP Gag-Pro polyprotein OS=Rous sarcoma virus (strain Prague C)
GN=gag-pro PE=1 SV=1
Length = 701
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 14/74 (18%)
Query: 273 KDGLTDRGFK----CRLCGERGHNRRTCPKSRLSYHNGTVSKHHRCQICRQRGHNRRTCP 328
+DG T G + C CG GH + CPK R S ++ RCQ+C GHN + C
Sbjct: 495 RDGQTGSGGRARGLCYTCGSPGHYQAQCPKKRKSGNS-----RERCQLCNGMGHNAKQC- 548
Query: 329 QVTGEKRHDNNGQK 342
KR N GQ+
Sbjct: 549 ----RKRDGNQGQR 558
Score = 35.0 bits (79), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 207 LHAQRVAAIKKAKGTAAARKHASETLKAFFSDPENRQKRSIAMKG--VRFYCKHCGREGH 264
L Q+ A + +G AAA A + L NR++ G R C CG GH
Sbjct: 462 LDRQKTAPLTD-QGIAAAMSSAIQPLIMAVV---NRERDGQTGSGGRARGLCYTCGSPGH 517
Query: 265 RKFYCPELKDGLTDRGFKCRLCGERGHNRRTC 296
+ CP+ + R +C+LC GHN + C
Sbjct: 518 YQAQCPKKRKSGNSR-ERCQLCNGMGHNAKQC 548
>sp|Q4P0H7|BBP_USTMA Branchpoint-bridging protein OS=Ustilago maydis (strain 521 / FGSC
9021) GN=BBP PE=3 SV=1
Length = 625
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 256 CKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCPKSRLSYHNGT 307
CK+CG +GHR F CPE ++ C CG +GH R C + R NG
Sbjct: 370 CKNCGNKGHRAFECPEQRNWTAH--IICHRCGGQGHLARDCTQGRAGAFNGA 419
>sp|Q12476|AIR2_YEAST Protein AIR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=AIR2 PE=1 SV=1
Length = 344
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 59/146 (40%), Gaps = 21/146 (14%)
Query: 248 AMKGVRFYCKHCGREGHRKFYCPEL---KDGLTD--------RGFKCRLCGERGHNRRTC 296
A+K C +C + GH K CP + G TD + +C C E GH R C
Sbjct: 55 AIKEAAPKCNNCSQRGHLKKDCPHIICSYCGATDDHYSRHCPKAIQCSKCDEVGHYRSQC 114
Query: 297 PKSRLSYHNGTVSKHHRCQICRQRGHNRRTCPQVTGEKRHDNNGQKHIP-TSASKTCTCR 355
P K +C +C+ + H++ CP + ++ +K P T C
Sbjct: 115 PHKW---------KKVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCY 165
Query: 356 FCGEKGHNIRTCPRRNLEQLKSEEAS 381
CG KGH C + ++ +E+ S
Sbjct: 166 NCGGKGHFGDDCKEKRSSRVPNEDGS 191
>sp|O92954|GAG_RSVSB Gag-Pro polyprotein OS=Rous sarcoma virus (strain Schmidt-Ruppin B)
GN=gag-pro PE=1 SV=1
Length = 701
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 14/74 (18%)
Query: 273 KDGLTDRGFK----CRLCGERGHNRRTCPKSRLSYHNGTVSKHHRCQICRQRGHNRRTCP 328
+DG T G + C CG GH + CPK R S ++ RCQ+C GHN + C
Sbjct: 495 RDGQTGSGGRARRLCYTCGSPGHYQAQCPKKRKSGNS-----RERCQLCDGMGHNAKQC- 548
Query: 329 QVTGEKRHDNNGQK 342
+R N GQ+
Sbjct: 549 ----RRRDSNQGQR 558
Score = 35.8 bits (81), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 207 LHAQRVAAIKKAKGTAAARKHASETLKAFFSDPENRQKRSIAMKG--VRFYCKHCGREGH 264
L Q++A + +G AAA A + L NR++ G R C CG GH
Sbjct: 462 LDRQKIAPLTD-QGIAAAMSSAIQPLVMAVV---NRERDGQTGSGGRARRLCYTCGSPGH 517
Query: 265 RKFYCPELKDGLTDRGFKCRLCGERGHNRRTC 296
+ CP+ + R +C+LC GHN + C
Sbjct: 518 YQAQCPKKRKSGNSR-ERCQLCDGMGHNAKQC 548
>sp|P0C776|GAG_RSVSA Gag-Pro polyprotein OS=Avian leukosis virus RSA GN=gag-pro PE=3
SV=1
Length = 701
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 14/74 (18%)
Query: 273 KDGLTDRGFK----CRLCGERGHNRRTCPKSRLSYHNGTVSKHHRCQICRQRGHNRRTCP 328
+DG T G + C CG GH + CPK R S ++ RCQ+C GHN + C
Sbjct: 495 RDGQTGSGGRARGLCYTCGSPGHYQAQCPKKRKSGNS-----RERCQLCDGMGHNAKQC- 548
Query: 329 QVTGEKRHDNNGQK 342
+R N GQ+
Sbjct: 549 ----RRRDGNQGQR 558
Score = 36.6 bits (83), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 53/136 (38%), Gaps = 17/136 (12%)
Query: 207 LHAQRVAAIKKAKGTAAARKHASETLKAFFSDPENRQKRSIAMKG--VRFYCKHCGREGH 264
L Q++A + +G AAA A + L NR++ G R C CG GH
Sbjct: 462 LDRQKIAPLTD-QGIAAAMSSAIQPLVMAVV---NRERDGQTGSGGRARGLCYTCGSPGH 517
Query: 265 RKFYCPELKDGLTDRGFKCRLCGERGHNRRTC----------PKSRLSYHNGTVSKHHRC 314
+ CP+ + R +C+LC GHN + C P LS + VS+
Sbjct: 518 YQAQCPKKRKSGNSR-ERCQLCDGMGHNAKQCRRRDGNQGQRPGKGLSSGSWPVSEQPAV 576
Query: 315 QICRQRGHNRRTCPQV 330
+ H R +V
Sbjct: 577 SLAMTMEHKDRPLVRV 592
>sp|O74555|BBP_SCHPO Branchpoint-bridging protein OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=bpb1 PE=1 SV=1
Length = 587
Score = 40.4 bits (93), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 256 CKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCP 297
C++CG GHR+F CPE + + CR CG GH R CP
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMN--IVCRHCGSIGHIARDCP 350
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 17/74 (22%)
Query: 300 RLSYHNGTV--SKHHRCQICRQRGHNRRTCPQVTGEKRHDNNGQKHIPTSASKTCTCRFC 357
+L+ NGT+ ++ CQ C GH R CP+ + CR C
Sbjct: 295 QLATLNGTLRDDENQVCQNCGNVGHRRFDCPERINH---------------TMNIVCRHC 339
Query: 358 GEKGHNIRTCPRRN 371
G GH R CP R+
Sbjct: 340 GSIGHIARDCPVRD 353
>sp|Q8A8C3|DNAJ_BACTN Chaperone protein DnaJ OS=Bacteroides thetaiotaomicron (strain ATCC
29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=dnaJ
PE=3 SV=1
Length = 396
Score = 40.0 bits (92), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 82 CPSCRGRGYT---PCVECGIERTRSDCSLCNGKGIMT---CRQCSGDCVIWEESV 130
CP+C+G G G +TR+ C CNG+G + C++C GD +++ E V
Sbjct: 184 CPTCKGSGSVIRNQQTILGTMQTRTTCPTCNGEGKIIKNKCKECGGDGIVYGEEV 238
>sp|Q8N567|ZCHC9_HUMAN Zinc finger CCHC domain-containing protein 9 OS=Homo sapiens
GN=ZCCHC9 PE=2 SV=2
Length = 271
Score = 39.7 bits (91), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%)
Query: 256 CKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCPKSRLSYHNGTVSK 310
C CG GH CP+ GL G C+LCG H ++ CP+S+ S TV +
Sbjct: 186 CFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSERMVTVGR 240
Score = 36.6 bits (83), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 46/129 (35%), Gaps = 15/129 (11%)
Query: 240 ENRQKRSIAMKGVRFYCKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCPKS 299
E R+ + A K C HC + GH CP + C CG H C K+
Sbjct: 114 EGRRLKRQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKC-KA 172
Query: 300 RLSYHNGTVSKHHRCQICRQRGHNRRTCPQVTGEKRHDNNGQKHIPTSASKTCTCRFCGE 359
++ G +C +C + GH R+CP D G C+ CG
Sbjct: 173 KVDPALGEFP-FAKCFVCGEMGHLSRSCPDNPKGLYADGGG-------------CKLCGS 218
Query: 360 KGHNIRTCP 368
H + CP
Sbjct: 219 VEHLKKDCP 227
Score = 35.8 bits (81), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 256 CKHCGREGHRKFYCPELKD-GLTDRGF-KCRLCGERGHNRRTCPKSRLSYHNGTVSKHHR 313
C CG H C D L + F KC +CGE GH R+CP + G +
Sbjct: 157 CYRCGSTEHEITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCPDN----PKGLYADGGG 212
Query: 314 CQICRQRGHNRRTCPQVTGEKR 335
C++C H ++ CP+ +R
Sbjct: 213 CKLCGSVEHLKKDCPESQNSER 234
>sp|Q12186|BBP_YEAST Branchpoint-bridging protein OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MSL5 PE=1 SV=1
Length = 476
Score = 39.7 bits (91), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 256 CKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCPKS--RLSYHNGTVSKHHR 313
C CG + H+++ CP K +G C++CG+ GH R C S R+S + + ++
Sbjct: 273 CPICGLKDHKRYDCPNRKIP-NIQGIVCKICGQTGHFSRDCNSSSQRMSRFDRNATVNNS 331
Query: 314 CQICRQRGH-NRRTCP-QVTGEKRHDNN 339
I H N T P Q R+DNN
Sbjct: 332 APIQSNDVHYNSNTHPIQAPKRSRYDNN 359
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 271 ELKDGLTDRGFKCRLCGERGHNRRTCPKSRLSYHNGTVSKHHRCQICRQRGHNRRTC 327
EL L + C +CG + H R CP ++ G V C+IC Q GH R C
Sbjct: 261 ELNGTLREDNRPCPICGLKDHKRYDCPNRKIPNIQGIV-----CKICGQTGHFSRDC 312
Score = 32.0 bits (71), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 15/68 (22%)
Query: 301 LSYHNGTVSKHHR-CQICRQRGHNRRTCPQVTGEKRHDNNGQKHIPTSASKTCTCRFCGE 359
L+ NGT+ + +R C IC + H R CP + IP + C+ CG+
Sbjct: 259 LAELNGTLREDNRPCPICGLKDHKRYDCPN------------RKIPNI--QGIVCKICGQ 304
Query: 360 KGHNIRTC 367
GH R C
Sbjct: 305 TGHFSRDC 312
>sp|B1AX39|ZCHC7_MOUSE Zinc finger CCHC domain-containing protein 7 OS=Mus musculus
GN=Zcchc7 PE=2 SV=1
Length = 541
Score = 39.3 bits (90), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 64/170 (37%), Gaps = 30/170 (17%)
Query: 228 ASETLKAFFSDPENRQK----RSIAMKGVRFY-------CKHCGREGHRKFYCPELKDGL 276
A + + F SD + K RS R+Y C++C + GH CP L
Sbjct: 199 AEDDVNWFISDKDIEAKIDNNRSSGRWNNRYYSVNKNVTCRNCDKRGHLSKNCP-----L 253
Query: 277 TDRGFKCRLCGERGHNRRTCPKSRLSYHNGTVSKHHRC----------QICRQRGHNRRT 326
+ C LC ERGH + CP + +S +HRC C GH+
Sbjct: 254 PQKVRACCLCSERGHLQYGCPARYCLDCSLPMSSNHRCFERLSWRKRCDRCDMIGHHADA 313
Query: 327 CPQVTGE----KRHDNNGQKHIPTSASKTCTCRFCGEKGHNIRTCPRRNL 372
CP++ + + + P+ S C C +KGH C R +
Sbjct: 314 CPEIWRQYHLTTKPGPPKKPKTPSGQSALVYCYNCAQKGHYGHECTERRM 363
>sp|A1L2T6|ZCHC7_XENLA Zinc finger CCHC domain-containing protein 7 OS=Xenopus laevis
GN=zcchc7 PE=2 SV=2
Length = 563
Score = 38.5 bits (88), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 60/156 (38%), Gaps = 37/156 (23%)
Query: 239 PENRQKRSIAMKGVRFYCKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCPK 298
P R R K V C++C + GH CP K + C LCGERGH + +CP
Sbjct: 252 PLRRSNRYYTDKNV--VCRNCDKRGHLSKNCPVPK-----KLPACCLCGERGHYQNSCP- 303
Query: 299 SRL--------SYHNGTVSKHH---RCQICRQRGHNRRTCPQVTGE-----------KRH 336
SR + + + + C C GH CP++ + K
Sbjct: 304 SRYCLNCFLPGHFFKECIERAYWRKTCHRCSMPGHYADACPEIWRQYHLTIKAGPIKKPK 363
Query: 337 DNNGQKHIPTSASKTCTCRFCGEKGHNIRTCPRRNL 372
++GQK I C C +KGH I C R +
Sbjct: 364 SHSGQKDI-------VYCCNCAKKGHCIYECKERRM 392
>sp|B2RX14|TUT4_MOUSE Terminal uridylyltransferase 4 OS=Mus musculus GN=Zcchc11 PE=1 SV=2
Length = 1644
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 31/120 (25%)
Query: 256 CKHCGREGHRKFYCPELK---------------------DGLTDRGFKCRLCGERGHNRR 294
C+ CG+ GH CP+ K D L R +C +CG+ GH RR
Sbjct: 1312 CRVCGKIGHYMKDCPKRKRLKKKDSEEEKEGNEEEKDSRDLLDSRDLRCFICGDAGHVRR 1371
Query: 295 TCPKSRLSYH-NGTVSKHHRCQICRQRGHNRRTCPQVTGEKRHDNNGQKHIPTSASKTCT 353
CP+ +++ N +V+ Q+ R N QV G + ++ + I T S C+
Sbjct: 1372 ECPEVKMARQRNSSVAA---AQLVR----NLVNAQQVAGSAQQQSD--QSIRTRQSSECS 1422
Score = 33.1 bits (74), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 53/151 (35%), Gaps = 35/151 (23%)
Query: 220 GTAAARKHASETLKAFFSDPENRQKRSIAMKGVRFYCKHCGREGHRKFYCPELKDG-LTD 278
G +RK + +KAF N +K + G FY GRE F L DG L
Sbjct: 1257 GAGVSRKMTNFIMKAFI----NGRK----LFGTPFY-PLIGREAEYFFDSRVLTDGELAP 1307
Query: 279 RGFKCRLCGERGHNRRTCPK-SRLSYHNGTVSKHHRCQICRQRGHNRRTCPQVTGEKRHD 337
CR+CG+ GH + CPK RL + K + R
Sbjct: 1308 NDRCCRVCGKIGHYMKDCPKRKRLKKKDSEEEKEGNEEEKDSRD---------------- 1351
Query: 338 NNGQKHIPTSASKTCTCRFCGEKGHNIRTCP 368
S+ C CG+ GH R CP
Sbjct: 1352 --------LLDSRDLRCFICGDAGHVRRECP 1374
>sp|Q9NUD5|ZCHC3_HUMAN Zinc finger CCHC domain-containing protein 3 OS=Homo sapiens
GN=ZCCHC3 PE=1 SV=1
Length = 404
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 11/55 (20%)
Query: 256 CKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCPKSRLSYHNGTVSK 310
C CG EGH YC +G C LCG+RGH CPK + HN ++
Sbjct: 354 CFRCGEEGHLSPYC--------RKGIVCNLCGKRGHAFAQCPK---AVHNSVAAQ 397
>sp|Q5TAX3|TUT4_HUMAN Terminal uridylyltransferase 4 OS=Homo sapiens GN=ZCCHC11 PE=1 SV=3
Length = 1644
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 52/145 (35%), Gaps = 43/145 (29%)
Query: 220 GTAAARKHASETLKAFFSDPENRQKRSIAMKGVRFYCKHCGREGHRKFYCPELKDG-LTD 278
G +RK + +KAF N +K + G FY GRE F L DG L
Sbjct: 1240 GAGVSRKMTNFIMKAFI----NGRK----LFGTPFY-PLIGREAEYFFDSRVLTDGELAP 1290
Query: 279 RGFKCRLCGERGHNRRTCPKS-----RLSYHNGTVS------------------------ 309
CR+CG+ GH + CPK RL +
Sbjct: 1291 NDRCCRVCGKIGHYMKDCPKRKSLLFRLKKKDSEEEKEGNEEEKDSRDVLDPRDLHDTRD 1350
Query: 310 ----KHHRCQICRQRGHNRRTCPQV 330
+ RC IC GH RR CP+V
Sbjct: 1351 FRDPRDLRCFICGDAGHVRRECPEV 1375
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 279 RGFKCRLCGERGHNRRTCPKSRLSYH-NGTVSKHHRCQICRQRGHNRRTCPQVTGEKRHD 337
R +C +CG+ GH RR CP+ +L+ N +V+ Q+ R N QV G +
Sbjct: 1355 RDLRCFICGDAGHVRRECPEVKLARQRNSSVAA---AQLVR----NLVNAQQVAGSAQQ- 1406
Query: 338 NNGQKHIPTSASKTCT 353
G + I T S C+
Sbjct: 1407 -QGDQSIRTRQSSECS 1421
>sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 OS=Caenorhabditis elegans GN=glh-4
PE=2 SV=2
Length = 1156
Score = 36.6 bits (83), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 256 CKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCPKSRLSYHNGTVSKHHRCQ 315
C++CG EGH C + K RG CR CG+ GH + C R+ + C+
Sbjct: 618 CRNCGIEGHFAVDCDQPK---VPRG-PCRNCGQEGHFAKDCQNERVR-----MEPTEPCR 668
Query: 316 ICRQRGHNRRTCP 328
C + GH CP
Sbjct: 669 RCAEEGHWGYECP 681
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 62/173 (35%), Gaps = 33/173 (19%)
Query: 213 AAIKKAKGTAAARKHASETLKAFFSDPENRQKRSIAMKGVRFYCKHCGREGHRKFYCPEL 272
A+K A G A ++ F +P + Q+ + C +CG EGH C +
Sbjct: 529 GAVKSAFGAAGFGSSSNFGNGNTFGEPSDNQRGNWDGGERPRGCHNCGEEGHISKECDKP 588
Query: 273 KDGLTDRGFKCRLCGERGHNRRTCPKSRLSY---HNGTVSKHHR------------CQIC 317
K R F CR C + GH C + R+ N + H C+ C
Sbjct: 589 K---VPR-FPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDCDQPKVPRGPCRNC 644
Query: 318 RQRGHNRRTCPQVTGEKRHDNNGQKHIPTSASKTCTCRFCGEKGHNIRTCPRR 370
Q GH + C N + PT CR C E+GH CP R
Sbjct: 645 GQEGHFAKDC---------QNERVRMEPTEP-----CRRCAEEGHWGYECPTR 683
>sp|P0CO44|BBP_CRYNJ Branchpoint-bridging protein OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=BBP PE=3 SV=1
Length = 546
Score = 36.2 bits (82), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 39/104 (37%), Gaps = 19/104 (18%)
Query: 287 GERGHNRRTCPKSRLSYHNGTV--SKHHRCQICRQRGHNRRTCPQVTGEKRHDNNGQKHI 344
GE H R L+ NGT+ ++ CQ C ++GH R CPQ
Sbjct: 343 GENDHKRNQL--RELASLNGTLRDDENQLCQNCGEKGHRRWECPQQR------------- 387
Query: 345 PTSASKTCTCRFCGEKGHNIRTCPRRNLEQLKSEEASQQASSFT 388
S CR CG GH R C R L + + S +T
Sbjct: 388 --VYSANVICRICGGAGHMARDCRGRGDPSLTQNKQTAFDSEYT 429
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 283 CRLCGERGHNRRTCPKSRLSYHNGTVSKHHRCQICRQRGHNRRTC 327
C+ CGE+GH R CP+ R+ S + C+IC GH R C
Sbjct: 370 CQNCGEKGHRRWECPQQRV------YSANVICRICGGAGHMARDC 408
>sp|P0CO45|BBP_CRYNB Branchpoint-bridging protein OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=BBP PE=3 SV=1
Length = 546
Score = 36.2 bits (82), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 39/104 (37%), Gaps = 19/104 (18%)
Query: 287 GERGHNRRTCPKSRLSYHNGTV--SKHHRCQICRQRGHNRRTCPQVTGEKRHDNNGQKHI 344
GE H R L+ NGT+ ++ CQ C ++GH R CPQ
Sbjct: 343 GENDHKRNQL--RELASLNGTLRDDENQLCQNCGEKGHRRWECPQQR------------- 387
Query: 345 PTSASKTCTCRFCGEKGHNIRTCPRRNLEQLKSEEASQQASSFT 388
S CR CG GH R C R L + + S +T
Sbjct: 388 --VYSANVICRICGGAGHMARDCRGRGDPSLTQNKQTAFDSEYT 429
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 283 CRLCGERGHNRRTCPKSRLSYHNGTVSKHHRCQICRQRGHNRRTC 327
C+ CGE+GH R CP+ R+ S + C+IC GH R C
Sbjct: 370 CQNCGEKGHRRWECPQQRV------YSANVICRICGGAGHMARDC 408
>sp|Q8N3Z6|ZCHC7_HUMAN Zinc finger CCHC domain-containing protein 7 OS=Homo sapiens
GN=ZCCHC7 PE=1 SV=2
Length = 543
Score = 36.2 bits (82), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 50/131 (38%), Gaps = 19/131 (14%)
Query: 256 CKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCPKSRLSY-------HNGTV 308
C++C + GH CP L + +C LC RGH +CP Y + +
Sbjct: 243 CRNCDKRGHLSKNCP-----LPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCL 297
Query: 309 SKHH---RCQICRQRGHNRRTCPQVTGE----KRHDNNGQKHIPTSASKTCTCRFCGEKG 361
+H +C C GH C ++ + + + P+ S C C +KG
Sbjct: 298 FRHSWDKQCDRCHMLGHYTDACTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCYHCAQKG 357
Query: 362 HNIRTCPRRNL 372
H CP R +
Sbjct: 358 HYGHECPEREV 368
>sp|P52739|ZN131_HUMAN Zinc finger protein 131 OS=Homo sapiens GN=ZNF131 PE=1 SV=2
Length = 623
Score = 36.2 bits (82), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 22/119 (18%)
Query: 237 SDPENRQKRSIAMKGVR-------FYCKHCGREGHRKFYCPELKDGLTDRGFKCRLCGER 289
SDP ++Q I + ++ F+C+ C R ++ E + FKC +C +R
Sbjct: 237 SDPTSKQVEGIEIVELQLSHVKDLFHCEKCNRSFKLFYHFKEHMKSHSTESFKCEICNKR 296
Query: 290 GHNRRTCPKSRLS-YH--NGTVSKH-------HRCQICRQR----GHNRRTCPQVTGEK 334
+ R + K L+ YH G VSK H CQ C ++ GH + + TGEK
Sbjct: 297 -YLRESAWKQHLNCYHLEEGGVSKKQRTGKKIHVCQYCEKQFDHFGHFKEHLRKHTGEK 354
>sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag-pol PE=3 SV=2
Length = 1467
Score = 36.2 bits (82), Expect = 0.47, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 15/105 (14%)
Query: 256 CKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCPKSRLSYHNGTVSKHHRCQ 315
C +CG+ GH + CPE R +C CG+ GH + C + TV +
Sbjct: 404 CYNCGKFGHMQRQCPE------PRKMRCLKCGKPGHLAKDCRGQVNFFRVWTVDGGKTEK 457
Query: 316 ICRQRGHNRRTCPQVTGEKRHDNNGQKHIPTSASKTCTCRFCGEK 360
R+ + C T ++H P SK C E+
Sbjct: 458 FSRRYSWSGTECASST---------ERHHPIRPSKEAPAAICRER 493
Score = 32.3 bits (72), Expect = 7.0, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 10/46 (21%)
Query: 282 KCRLCGERGHNRRTCPKSRLSYHNGTVSKHHRCQICRQRGHNRRTC 327
KC CG+ GH +R CP+ R RC C + GH + C
Sbjct: 403 KCYNCGKFGHMQRQCPEPR----------KMRCLKCGKPGHLAKDC 438
>sp|Q1A267|POL_SIVMB Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate MB66)
GN=gag-pol PE=3 SV=4
Length = 1438
Score = 35.8 bits (81), Expect = 0.50, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 44/128 (34%), Gaps = 23/128 (17%)
Query: 227 HASETLKAFFSDPENRQKRSIAMKGVR--FYCKHCGREGHRKFYCPELKDGLTDRGFKCR 284
H + L S ++ KG + C +CG+EGH C R C
Sbjct: 356 HKARVLAEAMSQAQHSNDAKRQFKGPKRIVKCFNCGKEGHIARNCK------APRRKGCW 409
Query: 285 LCGERGHNRRTCPKSR--------LSYHNGTVSKHHRCQICRQRGHNRR-------TCPQ 329
CG+ GH R C R L++ G + + NR TCP+
Sbjct: 410 KCGQEGHQMRNCTNERQANFFRETLAFQQGKAREFPSEETRTNSSTNRELRVQGGGTCPE 469
Query: 330 VTGEKRHD 337
E+R D
Sbjct: 470 GGSEERGD 477
>sp|Q9HFF2|YL92_SCHPO Uncharacterized protein C683.02c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC683.02c PE=4 SV=1
Length = 218
Score = 35.8 bits (81), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 54/136 (39%), Gaps = 24/136 (17%)
Query: 240 ENRQKRSIAMKGVRFYCKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCPKS 299
E R+ R I + +C C ++GH CPE KD ++ C CG + H+ C K
Sbjct: 63 EYRRLRRINQRNRDKFCFACRQQGHIVQDCPEAKDNVS----ICFRCGSKEHSLNACSK- 117
Query: 300 RLSYHNGTVSKHHRCQICRQRGHNRRTCPQVTGEKRHDNNGQKHIPTSASKTCTCRFCGE 359
G + K +C IC + GH C Q N + P C+FC
Sbjct: 118 -----KGPL-KFAKCFICHENGHLSGQCEQ---------NPKGLYPKGG----CCKFCSS 158
Query: 360 KGHNIRTCPRRNLEQL 375
H + C + N + +
Sbjct: 159 VHHLAKDCDQVNKDDV 174
>sp|B1WC15|ZCHC7_RAT Zinc finger CCHC domain-containing protein 7 OS=Rattus norvegicus
GN=Zcchc7 PE=2 SV=1
Length = 542
Score = 35.4 bits (80), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 62/178 (34%), Gaps = 30/178 (16%)
Query: 220 GTAAARKHASETLKAFFSDPENRQK----RSIAMKGVRFY-------CKHCGREGHRKFY 268
G A + F SD + K RS R+Y C++C + GH
Sbjct: 193 GCKDAGAEGENDVNWFISDKDIEAKIDNNRSSGRWNNRYYSVNKNVTCRNCDKRGHLSKN 252
Query: 269 CPELKDGLTDRGFKCRLCGERGHNRRTCPKSRLSYHNGTVSKHHRC----------QICR 318
CP L + C LC ERGH + CP + +S HRC C
Sbjct: 253 CP-----LPQKVRPCCLCSERGHLQYGCPARYCLDCSLPMSSTHRCFERSSWRKRCDRCD 307
Query: 319 QRGHNRRTCPQVTGE----KRHDNNGQKHIPTSASKTCTCRFCGEKGHNIRTCPRRNL 372
GH CP++ + + + P+ S C C +KGH C R +
Sbjct: 308 MIGHYADACPEIWRQYHLTTKPGPPKKPKTPSGQSALVYCYNCAQKGHYGHECTERRM 365
>sp|P36627|BYR3_SCHPO Cellular nucleic acid-binding protein homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=byr3 PE=4 SV=1
Length = 179
Score = 35.4 bits (80), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 33/92 (35%), Gaps = 30/92 (32%)
Query: 277 TDRGFKCRLCGERGHNRRTCPKSRLSYHNGTVSKHHRCQICRQRGHNRRTCPQVTGEKRH 336
T G +C CGE GH R C K + Y+ C Q GH C + EK
Sbjct: 13 TRPGPRCYNCGENGHQARECTKGSICYN------------CNQTGHKASECTEPQQEK-- 58
Query: 337 DNNGQKHIPTSASKTCTCRFCGEKGHNIRTCP 368
TC CG GH +R CP
Sbjct: 59 ----------------TCYACGTAGHLVRDCP 74
>sp|P27973|POL_SIVV1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM155) GN=gag-pol PE=3 SV=2
Length = 1470
Score = 35.0 bits (79), Expect = 0.95, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 256 CKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTC 296
C +CG+ GH + CPE R KC CG+ GH + C
Sbjct: 400 CYNCGKFGHMQRQCPE------PRKIKCLKCGKPGHLAKDC 434
>sp|Q8K3J5|ZN131_MOUSE Zinc finger protein 131 OS=Mus musculus GN=Znf131 PE=2 SV=1
Length = 619
Score = 35.0 bits (79), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 22/119 (18%)
Query: 237 SDPENRQKRSIAMKGVR-------FYCKHCGREGHRKFYCPELKDGLTDRGFKCRLCGER 289
SDP ++Q I + ++ F+C+ C R ++ E + FKC +C +R
Sbjct: 237 SDPISKQVEGIEIVELQLSHVKDLFHCEKCNRSFKLFYHFKEHMKSHSTESFKCEICNKR 296
Query: 290 GHNRRTCPKSRLS-YH--NGTVSKH-------HRCQICRQR----GHNRRTCPQVTGEK 334
+ R + K L+ YH G VSK H CQ C ++ GH + + TGEK
Sbjct: 297 -YLRESAWKQHLNCYHLEEGGVSKKQRTGKKIHICQYCDKQFDHFGHFKEHLRKHTGEK 354
>sp|Q8BX22|SALL4_MOUSE Sal-like protein 4 OS=Mus musculus GN=Sall4 PE=1 SV=2
Length = 1067
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 46/115 (40%), Gaps = 15/115 (13%)
Query: 278 DRGFKCRLCGERGHNRRTCPKSRLSYH--NGTVSKHHRCQICRQRGHNRRTCPQVTGEKR 335
+R F+C++CG R + + K+ L H N TV H C IC+++ N Q R
Sbjct: 598 ERPFQCKICG-RAFSTKGNLKTHLGVHRTNTTVKTQHSCPICQKKFTNAVMLQQ---HIR 653
Query: 336 HDNNGQKHIPTSASKTCTCRFCG-------EKGHNIRTCPRRNLEQLKSEEASQQ 383
GQ IP + C F E G C E +++EE Q
Sbjct: 654 MHMGGQ--IPNTPLPESPCDFTAPEPVAVSENGSASGVCQDDAAEGMEAEEVCSQ 706
>sp|Q8NEG7|DEN6B_HUMAN Protein DENND6B OS=Homo sapiens GN=DENND6B PE=2 SV=1
Length = 585
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 157 IKVGVKKKSKRVYHSPPPEVGLKISRSLKSLNAKTGLFTKRMKIIHRDPKLHAQRVAAIK 216
++VG K S + P +V LK LK+L+ K GL+T +HRD L + + ++
Sbjct: 349 LRVGEPKMSGDL----PKQVKLKKPSRLKTLDTKPGLYTAYTAHLHRDKALLKRLLKGVQ 404
Query: 217 KAK----GTAAARKHASETLKAFFSDPENRQKRSIAMK 250
K + +A R+H E ++F E+ + ++
Sbjct: 405 KKRPSDVQSALLRRHLLELTQSFIIPLEHYMASLMPLQ 442
>sp|Q9D9V7|DEN6B_MOUSE Protein DENND6B OS=Mus musculus GN=Dennd6b PE=2 SV=3
Length = 585
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 173 PPEVGLKISRSLKSLNAKTGLFTKRMKIIHRDPKLHAQRVAAIKKAK----GTAAARKHA 228
P +V LK LK+L+ K GL+T +HRD L + + ++K + +A R+H
Sbjct: 361 PKQVKLKKPSRLKTLDTKPGLYTSYTAHLHRDKALLKRLLKGVQKKRPWDVQSALLRRHL 420
Query: 229 SETLKAFFSDPENRQKRSIAMK 250
E ++F E+ + ++
Sbjct: 421 LELTQSFIIPLEHYMASLMPLQ 442
>sp|P17757|POL_HV2D1 Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate D194) GN=gag-pol PE=3 SV=3
Length = 1462
Score = 34.7 bits (78), Expect = 1.3, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 15/95 (15%)
Query: 216 KKAKGTAAARKHASETLKAFFSDPENRQKRSIAMKGVRFYCKHCGREGHRKFYCPELKDG 275
+KA+ A A K A F+ + Q+R+I C +CG+EGH C
Sbjct: 360 QKARLMAEALKEALTPAPIPFAAAQ--QRRAIR-------CWNCGKEGHSAKQCR----- 405
Query: 276 LTDRGFKCRLCGERGHNRRTCPKSRLSYHNGTVSK 310
R C CG+ GH CP+ + + +G K
Sbjct: 406 -APRRQGCWKCGKSGHIMANCPERQAGFLDGPTGK 439
>sp|P53849|GIS2_YEAST Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GIS2 PE=1 SV=1
Length = 153
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 15/78 (19%)
Query: 253 RFYCKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCPKSRLSYHNGTVSKHH 312
+ C CG H C + +DG++ G KC CG+ GH R C RL Y+
Sbjct: 91 KVSCYKCGGPNHMAKDCMK-EDGIS--GLKCYTCGQAGHMSRDCQNDRLCYN-------- 139
Query: 313 RCQICRQRGHNRRTCPQV 330
C + GH + CP+
Sbjct: 140 ----CNETGHISKDCPKA 153
>sp|Q79666|POL_HV1MV Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag-pol PE=3 SV=3
Length = 1446
Score = 34.3 bits (77), Expect = 1.7, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 217 KAKGTAAARKHASETLKAFFSDPENRQKRSIAMKGVRFYCKHCGREGHRKFYCPELKDGL 276
KAK A A A + LK ++ ++ ++ KG C +CG+EGH C +
Sbjct: 358 KAKILAEAMASAQQDLKGGYTAVFMQRGQNPNRKG-PIKCFNCGKEGHIAKNCRAPRK-- 414
Query: 277 TDRGFKCRLCGERGHNRRTCPKSR 300
RG C CG+ GH + C R
Sbjct: 415 --RG--CWKCGQEGHQMKDCKNGR 434
>sp|Q6FW77|BBP_CANGA Branchpoint-bridging protein OS=Candida glabrata (strain ATCC 2001
/ CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=BBP
PE=3 SV=1
Length = 465
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 16/68 (23%)
Query: 301 LSYHNGTVSKHHR-CQICRQRGHNRRTCPQVTGEKRHDNNGQKHIPTSASKTCTCRFCGE 359
L+ NGT+ + +R C C Q+GH + CP H T A K CR C +
Sbjct: 245 LAELNGTLREDNRPCATCGQQGHKKYECP--------------HRETFAMKII-CRRCNQ 289
Query: 360 KGHNIRTC 367
GH IR C
Sbjct: 290 PGHTIRDC 297
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 256 CKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTC 296
C CG++GH+K+ CP + CR C + GH R C
Sbjct: 259 CATCGQQGHKKYECPHRETFAMK--IICRRCNQPGHTIRDC 297
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 271 ELKDGLTDRGFKCRLCGERGHNRRTCPKSRLSYHNGTVSKHHRCQICRQRGHNRRTC 327
EL L + C CG++GH + CP H T + C+ C Q GH R C
Sbjct: 247 ELNGTLREDNRPCATCGQQGHKKYECP------HRETFAMKIICRRCNQPGHTIRDC 297
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 34.3 bits (77), Expect = 1.9, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 8/104 (7%)
Query: 217 KAKGTAAARKHASETLKAFFSDPENRQKRSIAMKGVRFYCKHCGREGHRKFYCPELKDGL 276
KA+ A A A + LK ++ ++ ++ KG C +CG+EGH C
Sbjct: 358 KARVLAEAMATAQQDLKGGYTAVFMQRGQNPIRKGT-IKCFNCGKEGHIARNCR------ 410
Query: 277 TDRGFKCRLCGERGHNRRTCPKSRLSYHNGTVSKHHRC-QICRQ 319
R C CG+ GH + C + + S H Q+C +
Sbjct: 411 APRKKGCWKCGQEGHQMKDCRNGKQFFRQILASGGHEARQLCAE 454
>sp|P35955|GAG_VILVK Gag polyprotein OS=Maedi visna virus (strain KV1772) GN=gag PE=3
SV=1
Length = 442
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 223 AARKHASETLKAFFSDPENRQKRSIAMKGVRFYCKHCGREGHRKFYCPELKDGLTDRGFK 282
A R SE K R + KGV C +CG+ GH C +G
Sbjct: 354 ACRDVGSEGFKMQLLAQALRPQGKAGQKGVNQKCYNCGKPGHLARQC--------RQGII 405
Query: 283 CRLCGERGHNRRTCPKSRLSYHN 305
C CG+RGH ++ C + + +N
Sbjct: 406 CHHCGKRGHMQKDCRQKKQQGNN 428
>sp|P27980|POL_SIVVG Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM3) GN=gag-pol PE=3 SV=2
Length = 1465
Score = 33.9 bits (76), Expect = 2.0, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 256 CKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTC 296
C +CG+ GH + CPE R +C CG+ GH + C
Sbjct: 404 CYNCGKFGHMQRQCPE------PRKMRCLKCGKPGHLAKDC 438
Score = 32.3 bits (72), Expect = 7.0, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 10/46 (21%)
Query: 282 KCRLCGERGHNRRTCPKSRLSYHNGTVSKHHRCQICRQRGHNRRTC 327
KC CG+ GH +R CP+ R RC C + GH + C
Sbjct: 403 KCYNCGKFGHMQRQCPEPR----------KMRCLKCGKPGHLAKDC 438
>sp|P03341|GAG_BAEVM Gag polyprotein OS=Baboon endogenous virus (strain M7) GN=gag PE=3
SV=4
Length = 537
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
Query: 274 DGLTDRGFKCRL-CGERGHNRRTCPKSRLSYHNGTVSKHHRCQICRQRGHNRRTCPQVTG 332
DG+ G + + E+ +N+R P+ R + + + ++ H + V
Sbjct: 423 DGIQTHGLQELVREAEKVYNKRETPEEREARLIKEQEEREDRRDRKRDKHLTKILAAVVT 482
Query: 333 EKRHDNNGQKHIPTSASKTCTCRFCGEKGHNIRTCPRRNLEQLK 376
EKR +G+ K C +C E+GH I+ CP+R +Q K
Sbjct: 483 EKRAGKSGETRRRPKVDKD-QCAYCKERGHWIKDCPKRPRDQKK 525
>sp|O42395|CNBP_CHICK Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2
SV=1
Length = 172
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 45/112 (40%), Gaps = 14/112 (12%)
Query: 256 CKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCPKSRLSYHNGTVSKHHRCQ 315
C +CGR GH C E K +R C CG+ GH R C + +C
Sbjct: 69 CYNCGRGGHIAKDCKEPK---REREQCCYNCGKPGHLARDCDH----------ADEQKCY 115
Query: 316 ICRQRGHNRRTCPQVTGEKRHDNNGQKHIPTSASKTCTCRFCGEKGHNIRTC 367
C + GH ++ C +V R G I S + C CGE GH R C
Sbjct: 116 SCGEFGHIQKDCTKVKC-YRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 166
>sp|O91080|POL_HV1YF Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF30) GN=gag-pol PE=3 SV=3
Length = 1449
Score = 33.9 bits (76), Expect = 2.4, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 15/82 (18%)
Query: 217 KAKGTAAARKHASETLKAFFSDPENRQKRSIAMKGVR--FYCKHCGREGHRKFYCPELKD 274
KA+ A A + + F+ N KG+R C +CG+EGH C +
Sbjct: 361 KARVLAEAMSQVQQPTTSVFAQRGN-------FKGIRKPIKCFNCGKEGHLARNCKAPRR 413
Query: 275 GLTDRGFKCRLCGERGHNRRTC 296
G C CG+ GH + C
Sbjct: 414 G------GCWKCGQEGHQMKDC 429
>sp|Q750X2|BBP_ASHGO Branchpoint-bridging protein OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=BBP PE=3 SV=2
Length = 507
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 283 CRLCGERGHNRRTCPKSRLSYHNGTVSKHHRCQICRQRGHNRRTC 327
C LCGE+GH + C N ++S CQ C Q GH R C
Sbjct: 274 CPLCGEQGHKKWEC------SSNPSLSMTVICQRCNQPGHAARDC 312
>sp|Q5SLW9|DNAJ1_THET8 Chaperone protein DnaJ 1 OS=Thermus thermophilus (strain HB8 / ATCC
27634 / DSM 579) GN=dnaJ1 PE=3 SV=1
Length = 350
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 73 NGQYIRELPCPSCRGRGYTPCVE---CGIERTRSDCSLCNGKGIM---TCRQCSG 121
G+ R PCP+CRG+G G TR+ C C G+G + TC C G
Sbjct: 133 GGEGGRRTPCPTCRGQGVVESYRQSFFGTVVTRTACPHCKGRGYLLAETCPACRG 187
>sp|Q72GN6|DNAJ_THET2 Chaperone protein DnaJ OS=Thermus thermophilus (strain HB27 / ATCC
BAA-163 / DSM 7039) GN=dnaJ PE=3 SV=1
Length = 350
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 73 NGQYIRELPCPSCRGRGYTPCVE---CGIERTRSDCSLCNGKGIM---TCRQCSG 121
G+ R PCP+CRG+G G TR+ C C G+G + TC C G
Sbjct: 133 GGEGGRRTPCPTCRGQGVVESYRQSFFGTVVTRTACPHCKGRGYLLAETCPACRG 187
>sp|Q8R1J3|ZCHC9_MOUSE Zinc finger CCHC domain-containing protein 9 OS=Mus musculus
GN=Zcchc9 PE=2 SV=1
Length = 273
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 46/128 (35%), Gaps = 15/128 (11%)
Query: 240 ENRQKRSIAMKGVRFYCKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCPKS 299
E R+ + A K C HC + GH CP + + C CG H C ++
Sbjct: 114 EGRRLKRQAAKKNAMVCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKC-RA 172
Query: 300 RLSYHNGTVSKHHRCQICRQRGHNRRTCPQVTGEKRHDNNGQKHIPTSASKTCTCRFCGE 359
+ G +C +C + GH R+CP T D +C+ CG
Sbjct: 173 NVDPALGEFP-FAKCFVCGEMGHLSRSCPDNTKGVYADGG-------------SCKLCGS 218
Query: 360 KGHNIRTC 367
H + C
Sbjct: 219 VEHFKKDC 226
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 256 CKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCPKSRLSYHNGTVSK 310
C CG GH CP+ G+ G C+LCG H ++ C +++ S TV +
Sbjct: 186 CFVCGEMGHLSRSCPDNTKGVYADGGSCKLCGSVEHFKKDCRENQNSDRIITVGR 240
>sp|Q2KIN0|ZCHC7_BOVIN Zinc finger CCHC domain-containing protein 7 OS=Bos taurus
GN=ZCCHC7 PE=2 SV=2
Length = 546
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 63/178 (35%), Gaps = 30/178 (16%)
Query: 220 GTAAARKHASETLKAFFSDPENR----QKRSIAMKGVRFY-------CKHCGREGHRKFY 268
G + + + F SD + KRS R+Y C++C + GH
Sbjct: 196 GCEKSVNEGEDDVNWFISDKDIEAQIGNKRSSGRWTHRYYTANKNVTCRNCDKCGHLSKN 255
Query: 269 CPELKDGLTDRGFKCRLCGERGHNRRTCPKSRLSYHNGTVSKHH----------RCQICR 318
CP + C LC ERGH + CP + +S H RC C
Sbjct: 256 CP-----FPQKVRPCCLCSERGHLQYACPARFCLGCSLPMSSTHRCLERASWRKRCDRCD 310
Query: 319 QRGHNRRTCPQVTGE----KRHDNNGQKHIPTSASKTCTCRFCGEKGHNIRTCPRRNL 372
GH CP++ + + + P+ S C CG++GH C R +
Sbjct: 311 MIGHYADACPEIWRQYHLTTKPGPPKKPKTPSGQSTLVYCYNCGQEGHYGHECTERRM 368
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,570,562
Number of Sequences: 539616
Number of extensions: 6875338
Number of successful extensions: 19956
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 274
Number of HSP's that attempted gapping in prelim test: 18995
Number of HSP's gapped (non-prelim): 928
length of query: 388
length of database: 191,569,459
effective HSP length: 119
effective length of query: 269
effective length of database: 127,355,155
effective search space: 34258536695
effective search space used: 34258536695
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)