Query 037631
Match_columns 388
No_of_seqs 289 out of 1625
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 02:56:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037631.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037631hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00368 universal minicircle 99.8 9.3E-19 2E-23 155.3 8.2 109 253-370 27-148 (148)
2 PTZ00368 universal minicircle 99.8 1.8E-18 3.9E-23 153.4 7.8 110 254-370 1-122 (148)
3 COG5082 AIR1 Arginine methyltr 99.6 3E-16 6.6E-21 144.7 5.5 111 251-376 58-179 (190)
4 KOG4400 E3 ubiquitin ligase in 99.1 3.7E-11 8.1E-16 116.0 5.7 94 253-373 92-186 (261)
5 COG5082 AIR1 Arginine methyltr 99.1 1.2E-10 2.7E-15 107.8 4.5 82 280-375 60-144 (190)
6 KOG4400 E3 ubiquitin ligase in 99.0 7.3E-10 1.6E-14 107.0 6.3 78 281-370 73-162 (261)
7 PF00607 Gag_p24: gag gene pro 98.4 5.1E-08 1.1E-12 91.9 -0.9 86 134-227 111-205 (206)
8 PF00098 zf-CCHC: Zinc knuckle 97.8 9.9E-06 2.2E-10 48.3 1.8 17 353-369 2-18 (18)
9 PF00098 zf-CCHC: Zinc knuckle 97.6 2.5E-05 5.3E-10 46.6 0.8 17 313-329 2-18 (18)
10 PF13696 zf-CCHC_2: Zinc knuck 96.4 0.0018 3.9E-08 44.2 1.8 21 350-370 7-27 (32)
11 PF13696 zf-CCHC_2: Zinc knuck 96.2 0.0024 5.3E-08 43.5 1.4 21 311-331 8-28 (32)
12 KOG0119 Splicing factor 1/bran 95.2 0.018 3.8E-07 60.7 4.0 44 253-299 261-304 (554)
13 PLN03165 chaperone protein dna 94.8 0.019 4.1E-07 49.7 2.3 45 81-125 54-98 (111)
14 PF13917 zf-CCHC_3: Zinc knuck 93.6 0.041 8.8E-07 39.8 1.6 19 351-369 4-22 (42)
15 PF00684 DnaJ_CXXCXGXG: DnaJ c 93.2 0.069 1.5E-06 41.5 2.5 20 72-91 34-53 (66)
16 KOG2824 Glutaredoxin-related p 93.1 0.063 1.4E-06 53.1 2.5 42 80-121 230-281 (281)
17 KOG0119 Splicing factor 1/bran 92.6 0.075 1.6E-06 56.1 2.5 43 281-330 262-304 (554)
18 PF00684 DnaJ_CXXCXGXG: DnaJ c 92.0 0.089 1.9E-06 40.9 1.7 42 80-121 16-64 (66)
19 smart00343 ZnF_C2HC zinc finge 92.0 0.075 1.6E-06 33.9 1.0 19 353-371 1-19 (26)
20 PRK14289 chaperone protein Dna 91.7 0.099 2.1E-06 53.7 2.2 55 76-130 151-228 (386)
21 PF13917 zf-CCHC_3: Zinc knuck 91.1 0.12 2.6E-06 37.4 1.4 19 311-329 4-22 (42)
22 PRK14295 chaperone protein Dna 90.9 0.14 3.1E-06 52.7 2.3 53 76-128 163-234 (389)
23 PRK10767 chaperone protein Dna 90.9 0.16 3.5E-06 51.8 2.6 53 76-128 139-210 (371)
24 smart00343 ZnF_C2HC zinc finge 90.6 0.11 2.3E-06 33.2 0.7 18 313-330 1-18 (26)
25 PRK14301 chaperone protein Dna 90.5 0.17 3.8E-06 51.8 2.5 53 76-128 141-212 (373)
26 PRK14294 chaperone protein Dna 90.5 0.18 4E-06 51.4 2.7 54 75-128 140-212 (366)
27 PRK14285 chaperone protein Dna 90.3 0.2 4.2E-06 51.3 2.7 54 75-128 142-214 (365)
28 KOG2813 Predicted molecular ch 90.2 0.16 3.4E-06 51.3 1.8 84 35-122 149-254 (406)
29 PRK14293 chaperone protein Dna 90.1 0.21 4.5E-06 51.1 2.7 54 75-128 139-215 (374)
30 PRK14284 chaperone protein Dna 90.0 0.19 4.2E-06 51.7 2.4 52 77-128 156-226 (391)
31 PRK14296 chaperone protein Dna 90.0 0.25 5.4E-06 50.7 3.2 53 76-128 146-221 (372)
32 PRK14282 chaperone protein Dna 89.9 0.21 4.5E-06 51.1 2.5 54 75-128 148-224 (369)
33 PRK14286 chaperone protein Dna 89.7 0.21 4.6E-06 51.1 2.4 53 76-128 147-218 (372)
34 TIGR02349 DnaJ_bact chaperone 89.5 0.25 5.5E-06 50.0 2.7 55 75-129 139-216 (354)
35 PRK14300 chaperone protein Dna 89.5 0.24 5.2E-06 50.7 2.6 53 76-128 142-213 (372)
36 PRK14298 chaperone protein Dna 89.4 0.24 5.3E-06 50.8 2.5 53 76-128 138-213 (377)
37 PRK14280 chaperone protein Dna 89.3 0.26 5.5E-06 50.6 2.7 53 76-128 140-215 (376)
38 PRK14277 chaperone protein Dna 89.1 0.24 5.3E-06 50.9 2.3 53 76-128 152-227 (386)
39 PRK14297 chaperone protein Dna 89.0 0.27 5.9E-06 50.4 2.6 52 76-127 145-219 (380)
40 PTZ00037 DnaJ_C chaperone prot 88.7 0.33 7.1E-06 50.8 3.0 54 76-129 147-224 (421)
41 PRK14278 chaperone protein Dna 88.2 0.34 7.3E-06 49.8 2.6 54 75-128 135-211 (378)
42 PRK14290 chaperone protein Dna 87.5 0.49 1.1E-05 48.3 3.3 17 76-92 146-162 (365)
43 cd03031 GRX_GRX_like Glutaredo 87.4 0.34 7.3E-06 43.7 1.8 37 80-116 100-147 (147)
44 PRK14283 chaperone protein Dna 87.0 0.44 9.6E-06 48.8 2.7 53 76-128 143-218 (378)
45 PRK14276 chaperone protein Dna 86.5 0.46 9.9E-06 48.8 2.4 54 75-128 142-218 (380)
46 PRK14287 chaperone protein Dna 86.4 0.44 9.6E-06 48.8 2.3 52 76-127 135-209 (371)
47 KOG0314 Predicted E3 ubiquitin 86.0 1.1 2.4E-05 47.3 5.0 68 253-332 112-179 (448)
48 PF14392 zf-CCHC_4: Zinc knuck 86.0 0.29 6.2E-06 36.0 0.5 24 248-271 26-49 (49)
49 KOG0314 Predicted E3 ubiquitin 85.4 0.98 2.1E-05 47.7 4.2 47 253-301 133-179 (448)
50 KOG0109 RNA-binding protein LA 84.8 0.49 1.1E-05 47.4 1.6 26 351-376 160-185 (346)
51 PRK14279 chaperone protein Dna 84.8 0.73 1.6E-05 47.6 3.0 54 76-129 170-242 (392)
52 PRK14290 chaperone protein Dna 84.3 0.71 1.5E-05 47.1 2.6 34 80-113 166-216 (365)
53 PRK14288 chaperone protein Dna 84.1 0.78 1.7E-05 47.0 2.8 52 76-127 137-206 (369)
54 PRK14281 chaperone protein Dna 83.9 0.71 1.5E-05 47.8 2.5 53 76-128 160-234 (397)
55 COG5222 Uncharacterized conser 83.5 0.62 1.4E-05 46.8 1.8 21 311-331 176-196 (427)
56 COG5222 Uncharacterized conser 82.5 0.74 1.6E-05 46.3 1.8 24 349-372 174-197 (427)
57 PRK14301 chaperone protein Dna 82.5 0.76 1.6E-05 47.1 2.0 35 80-114 162-209 (373)
58 KOG0712 Molecular chaperone (D 82.4 0.73 1.6E-05 47.0 1.8 52 79-130 143-203 (337)
59 PRK14291 chaperone protein Dna 82.3 0.94 2E-05 46.6 2.6 53 76-128 153-223 (382)
60 PRK14292 chaperone protein Dna 82.3 0.95 2.1E-05 46.2 2.6 54 75-128 135-212 (371)
61 PRK14284 chaperone protein Dna 82.2 0.86 1.9E-05 47.0 2.3 35 80-114 176-223 (391)
62 PRK14289 chaperone protein Dna 82.1 0.91 2E-05 46.7 2.4 36 79-114 171-223 (386)
63 PRK14297 chaperone protein Dna 81.7 0.96 2.1E-05 46.5 2.4 35 80-114 166-217 (380)
64 PRK10767 chaperone protein Dna 80.4 1.2 2.5E-05 45.6 2.5 35 80-114 160-207 (371)
65 PRK14298 chaperone protein Dna 80.3 1.3 2.8E-05 45.6 2.7 36 80-115 159-211 (377)
66 PF14392 zf-CCHC_4: Zinc knuck 79.9 0.57 1.2E-05 34.4 0.0 17 312-328 32-48 (49)
67 PF15288 zf-CCHC_6: Zinc knuck 79.8 0.9 1.9E-05 32.6 1.0 19 312-330 2-22 (40)
68 PRK14285 chaperone protein Dna 78.4 1.5 3.3E-05 44.8 2.6 35 80-114 164-211 (365)
69 PRK14296 chaperone protein Dna 78.4 1.4 3E-05 45.3 2.3 34 80-113 167-217 (372)
70 PF15288 zf-CCHC_6: Zinc knuck 78.2 1.5 3.3E-05 31.5 1.7 23 352-374 2-26 (40)
71 PRK14286 chaperone protein Dna 77.9 1.4 3E-05 45.3 2.1 36 80-115 168-216 (372)
72 PRK14288 chaperone protein Dna 77.9 1.7 3.6E-05 44.6 2.7 35 80-114 157-204 (369)
73 KOG2813 Predicted molecular ch 77.7 1 2.2E-05 45.8 1.0 57 80-137 218-280 (406)
74 PRK14278 chaperone protein Dna 77.4 1.6 3.4E-05 44.9 2.4 23 92-114 184-208 (378)
75 TIGR02349 DnaJ_bact chaperone 76.5 1.7 3.6E-05 44.1 2.3 36 79-114 160-212 (354)
76 PTZ00037 DnaJ_C chaperone prot 76.5 1.8 3.8E-05 45.4 2.5 36 79-114 166-220 (421)
77 PRK14279 chaperone protein Dna 75.8 1.5 3.3E-05 45.3 1.8 35 80-114 191-238 (392)
78 KOG0109 RNA-binding protein LA 75.7 1.4 2.9E-05 44.4 1.3 22 310-331 159-180 (346)
79 PRK14294 chaperone protein Dna 74.7 2.1 4.5E-05 43.8 2.4 35 80-114 162-209 (366)
80 PRK14281 chaperone protein Dna 74.3 2.2 4.8E-05 44.1 2.5 36 79-114 179-231 (397)
81 PRK14295 chaperone protein Dna 72.8 2.1 4.6E-05 44.2 1.9 34 81-114 185-231 (389)
82 PRK14291 chaperone protein Dna 72.6 2.5 5.3E-05 43.5 2.4 35 80-114 174-220 (382)
83 COG0484 DnaJ DnaJ-class molecu 72.3 2.3 5.1E-05 43.9 2.1 53 76-128 139-212 (371)
84 PRK14287 chaperone protein Dna 72.2 2.4 5.2E-05 43.5 2.1 36 80-115 156-208 (371)
85 PRK14282 chaperone protein Dna 71.9 2.7 5.8E-05 43.1 2.4 35 80-114 170-221 (369)
86 PRK14276 chaperone protein Dna 69.4 3.2 6.9E-05 42.7 2.3 35 80-114 164-215 (380)
87 TIGR02642 phage_xxxx uncharact 69.0 2.3 4.9E-05 40.1 1.0 31 76-113 96-126 (186)
88 PRK14280 chaperone protein Dna 68.2 3.5 7.6E-05 42.3 2.4 35 80-114 161-212 (376)
89 COG0484 DnaJ DnaJ-class molecu 67.9 2.8 6E-05 43.4 1.5 36 78-113 158-208 (371)
90 PRK14292 chaperone protein Dna 66.9 3.9 8.5E-05 41.8 2.4 22 93-114 186-209 (371)
91 PLN03165 chaperone protein dna 66.5 4.8 0.0001 34.9 2.5 25 79-115 41-65 (111)
92 PRK14277 chaperone protein Dna 65.9 4.1 8.8E-05 42.0 2.3 35 80-114 173-224 (386)
93 PF14787 zf-CCHC_5: GAG-polypr 65.5 3.7 8E-05 28.9 1.3 21 352-372 3-23 (36)
94 PRK14293 chaperone protein Dna 64.5 4.4 9.4E-05 41.6 2.2 22 93-114 189-212 (374)
95 PRK14300 chaperone protein Dna 63.7 4.7 0.0001 41.3 2.3 35 80-114 163-210 (372)
96 PRK14283 chaperone protein Dna 61.4 5.2 0.00011 41.1 2.1 35 80-114 164-215 (378)
97 TIGR00630 uvra excinuclease AB 59.7 7.3 0.00016 44.9 3.0 64 41-113 707-770 (924)
98 PF14787 zf-CCHC_5: GAG-polypr 59.2 5.6 0.00012 28.0 1.3 17 255-271 4-20 (36)
99 COG1107 Archaea-specific RecJ- 57.0 5.2 0.00011 43.8 1.2 43 76-129 50-96 (715)
100 PF11781 RRN7: RNA polymerase 49.7 9 0.00019 26.7 1.1 17 81-97 10-32 (36)
101 PRK00349 uvrA excinuclease ABC 48.6 19 0.00041 41.7 4.0 62 42-113 710-772 (943)
102 PRK00635 excinuclease ABC subu 41.3 14 0.00031 45.4 1.7 72 33-113 1566-1641(1809)
103 PRK14559 putative protein seri 40.3 22 0.00047 39.5 2.8 42 80-121 2-49 (645)
104 PRK14890 putative Zn-ribbon RN 38.7 17 0.00036 28.3 1.1 34 78-112 24-58 (59)
105 TIGR02642 phage_xxxx uncharact 31.8 24 0.00052 33.3 1.2 20 73-92 108-128 (186)
106 PF05741 zf-nanos: Nanos RNA b 30.4 23 0.00049 27.2 0.7 18 281-298 34-54 (55)
107 COG1405 SUA7 Transcription ini 30.1 46 0.00099 33.3 3.0 37 112-150 19-62 (285)
108 PRK00423 tfb transcription ini 29.0 32 0.0007 34.4 1.7 22 112-135 29-51 (310)
109 COG1198 PriA Primosomal protei 27.7 37 0.00081 38.3 2.1 31 86-119 428-468 (730)
110 PF12675 DUF3795: Protein of u 27.2 44 0.00096 26.7 1.9 40 76-121 31-71 (78)
111 smart00647 IBR In Between Ring 24.4 76 0.0016 23.2 2.6 17 351-367 48-64 (64)
112 PF13248 zf-ribbon_3: zinc-rib 23.1 46 0.001 21.2 1.0 18 80-97 3-23 (26)
113 PRK10523 lipoprotein involved 23.1 47 0.001 32.5 1.6 27 62-91 34-60 (234)
114 KOG2044 5'-3' exonuclease HKE1 23.0 38 0.00083 38.5 1.1 24 349-372 258-281 (931)
115 PF04805 Pox_E10: E10-like pro 22.9 16 0.00035 29.2 -1.3 9 78-86 14-22 (70)
116 PF07295 DUF1451: Protein of u 22.7 55 0.0012 29.7 1.8 39 70-113 96-141 (146)
117 KOG2044 5'-3' exonuclease HKE1 21.4 58 0.0013 37.1 2.0 22 250-271 257-278 (931)
118 KOG0107 Alternative splicing f 21.3 49 0.0011 31.3 1.3 15 313-327 102-116 (195)
119 KOG0712 Molecular chaperone (D 21.3 86 0.0019 32.3 3.1 40 78-124 126-165 (337)
120 KOG3116 Predicted C3H1-type Zn 20.9 22 0.00048 32.7 -1.1 22 311-332 27-48 (177)
121 KOG2673 Uncharacterized conser 20.8 49 0.0011 35.3 1.3 22 254-275 129-150 (485)
122 PF12353 eIF3g: Eukaryotic tra 20.5 54 0.0012 29.0 1.3 21 350-371 105-125 (128)
123 COG5179 TAF1 Transcription ini 20.5 66 0.0014 35.9 2.2 18 281-298 938-957 (968)
No 1
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=99.76 E-value=9.3e-19 Score=155.30 Aligned_cols=109 Identities=31% Similarity=0.630 Sum_probs=82.4
Q ss_pred ccccccccccCccccCCCCCcCCCCcCcccceecccCCCccccCCCCCCCCCCCCCCCcceeeecCCCccccCCCCCCC-
Q 037631 253 RFYCKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCPKSRLSYHNGTVSKHHRCQICRQRGHNRRTCPQVT- 331 (388)
Q Consensus 253 ~~~Cf~CG~~GH~ar~CP~~~~~~~~~~~~C~~CG~~GH~ardCp~~~~~~~~G~~~~~~~C~~CGe~GH~ardCP~~~- 331 (388)
...||+|++.||++++||..... .....|++|++.||++++||+.... .....|++|++.||++++||+..
T Consensus 27 ~~~C~~Cg~~GH~~~~Cp~~~~~--~~~~~C~~Cg~~GH~~~~Cp~~~~~------~~~~~C~~Cg~~GH~~~~C~~~~~ 98 (148)
T PTZ00368 27 ARPCYKCGEPGHLSRECPSAPGG--RGERSCYNCGKTGHLSRECPEAPPG------SGPRSCYNCGQTGHISRECPNRAK 98 (148)
T ss_pred CccCccCCCCCcCcccCcCCCCC--CCCcccCCCCCcCcCcccCCCcccC------CCCcccCcCCCCCcccccCCCccc
Confidence 56888899999998898875431 1235789999989999999875321 12467999999999999998855
Q ss_pred -------CCCCCCCCCCcccCCCC-----CCCccccccCCCCcCCCCCCCC
Q 037631 332 -------GEKRHDNNGQKHIPTSA-----SKTCTCRFCGEKGHNIRTCPRR 370 (388)
Q Consensus 332 -------~~~Cg~~Gh~~~~~~~~-----~~~~~Cy~CGe~GH~ardCP~~ 370 (388)
++.|+..||++. +|.. .....||+|++.||+++|||+.
T Consensus 99 ~~~~~~~C~~Cg~~gH~~~-~C~~~~~~~~~~~~C~~Cg~~gH~~~dCp~~ 148 (148)
T PTZ00368 99 GGAARRACYNCGGEGHISR-DCPNAGKRPGGDKTCYNCGQTGHLSRDCPDK 148 (148)
T ss_pred ccccchhhcccCcCCcchh-cCCCccccCCCCCccccCCCcCcccccCCCC
Confidence 577888888862 3332 2457899999999999999973
No 2
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=99.75 E-value=1.8e-18 Score=153.45 Aligned_cols=110 Identities=28% Similarity=0.614 Sum_probs=89.5
Q ss_pred cccccccccCccccCCCCCcCCCCcCcccceecccCCCccccCCCCCCCCCCCCCCCcceeeecCCCccccCCCCCCC--
Q 037631 254 FYCKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCPKSRLSYHNGTVSKHHRCQICRQRGHNRRTCPQVT-- 331 (388)
Q Consensus 254 ~~Cf~CG~~GH~ar~CP~~~~~~~~~~~~C~~CG~~GH~ardCp~~~~~~~~G~~~~~~~C~~CGe~GH~ardCP~~~-- 331 (388)
++||+|++.||++++||............|++|++.||++++||+..... ....|++|++.||++++||+..
T Consensus 1 ~~C~~C~~~GH~~~~c~~~~~~~~~~~~~C~~Cg~~GH~~~~Cp~~~~~~------~~~~C~~Cg~~GH~~~~Cp~~~~~ 74 (148)
T PTZ00368 1 MVCYRCGGVGHQSRECPNSAPAGAAKARPCYKCGEPGHLSRECPSAPGGR------GERSCYNCGKTGHLSRECPEAPPG 74 (148)
T ss_pred CcCCCCCCCCcCcccCcCCCCCCCCCCccCccCCCCCcCcccCcCCCCCC------CCcccCCCCCcCcCcccCCCcccC
Confidence 37999999999999999854433344579999999999999999865321 2468999999999999999874
Q ss_pred -----CCCCCCCCCCcccCCCC-----CCCccccccCCCCcCCCCCCCC
Q 037631 332 -----GEKRHDNNGQKHIPTSA-----SKTCTCRFCGEKGHNIRTCPRR 370 (388)
Q Consensus 332 -----~~~Cg~~Gh~~~~~~~~-----~~~~~Cy~CGe~GH~ardCP~~ 370 (388)
++.|+..||++. +|.. .....||+|++.||++++||+.
T Consensus 75 ~~~~~C~~Cg~~GH~~~-~C~~~~~~~~~~~~C~~Cg~~gH~~~~C~~~ 122 (148)
T PTZ00368 75 SGPRSCYNCGQTGHISR-ECPNRAKGGAARRACYNCGGEGHISRDCPNA 122 (148)
T ss_pred CCCcccCcCCCCCcccc-cCCCcccccccchhhcccCcCCcchhcCCCc
Confidence 688999999973 3322 2346899999999999999986
No 3
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.62 E-value=3e-16 Score=144.68 Aligned_cols=111 Identities=26% Similarity=0.559 Sum_probs=66.1
Q ss_pred ccccccccccccCccccCCCCC---------cCC-CCcCcccceecccCCCccccC-CCCCCCCCCCCCCCcceeeecCC
Q 037631 251 GVRFYCKHCGREGHRKFYCPEL---------KDG-LTDRGFKCRLCGERGHNRRTC-PKSRLSYHNGTVSKHHRCQICRQ 319 (388)
Q Consensus 251 g~~~~Cf~CG~~GH~ar~CP~~---------~~~-~~~~~~~C~~CG~~GH~ardC-p~~~~~~~~G~~~~~~~C~~CGe 319 (388)
....+||+||+.||.+++||.. -.. .-...+.|++||+.||++++| |... ....|+.|+.
T Consensus 58 ~~~~~C~nCg~~GH~~~DCP~~iC~~C~~~~H~s~~C~~~~~C~~Cg~~GH~~~dC~P~~~---------~~~~C~~C~s 128 (190)
T COG5082 58 EENPVCFNCGQNGHLRRDCPHSICYNCSWDGHRSNHCPKPKKCYNCGETGHLSRDCNPSKD---------QQKSCFDCNS 128 (190)
T ss_pred ccccccchhcccCcccccCChhHhhhcCCCCcccccCCcccccccccccCccccccCcccc---------cCcceeccCC
Confidence 3467999999999999999920 000 001124555555555555555 2321 1235555555
Q ss_pred CccccCCCCCCCCCCCCCCCCCcccCCCCCCCccccccCCCCcCCCCCCCCCCCCcc
Q 037631 320 RGHNRRTCPQVTGEKRHDNNGQKHIPTSASKTCTCRFCGEKGHNIRTCPRRNLEQLK 376 (388)
Q Consensus 320 ~GH~ardCP~~~~~~Cg~~Gh~~~~~~~~~~~~~Cy~CGe~GH~ardCP~~~~s~~~ 376 (388)
.+|++++||+.|...-...|+.. .....||+|+..||+++||+.+..+..+
T Consensus 129 ~~H~s~~Cp~~~k~y~~~~~~~~------~~~~~cy~c~~~~H~~~dc~~~~~s~~~ 179 (190)
T COG5082 129 TRHSSEDCPSIWKHYVLNNGDGH------PIKKFCYSCGSAGHFGDDCKEPRSSRVP 179 (190)
T ss_pred CccccccCcccccccccccCCCc------ceeeeccccCCccccCCCCCCCcccccc
Confidence 55555555555532211111111 1246799999999999999999887776
No 4
>KOG4400 consensus E3 ubiquitin ligase interacting with arginine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=3.7e-11 Score=116.01 Aligned_cols=94 Identities=31% Similarity=0.651 Sum_probs=56.2
Q ss_pred ccccccccccCccccCCCCCcCCCCcCcccceecccCCCcc-ccCCCCCCCCCCCCCCCcceeeecCCCccccCCCCCCC
Q 037631 253 RFYCKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNR-RTCPKSRLSYHNGTVSKHHRCQICRQRGHNRRTCPQVT 331 (388)
Q Consensus 253 ~~~Cf~CG~~GH~ar~CP~~~~~~~~~~~~C~~CG~~GH~a-rdCp~~~~~~~~G~~~~~~~C~~CGe~GH~ardCP~~~ 331 (388)
...|++|++.||++++||....... ....|+.|+..||.. .++..... ... ..||+||+.||++++||++
T Consensus 92 ~~~c~~C~~~gH~~~~c~~~~~~~~-~~~~~~~c~~~gh~~~~~~~~~~~------~~~-~~Cy~Cg~~GH~s~~C~~~- 162 (261)
T KOG4400|consen 92 AAACFNCGEGGHIERDCPEAGKEGS-SETSCYSCGKTGHRGCPDADPVDG------PKP-AKCYSCGEQGHISDDCPEN- 162 (261)
T ss_pred chhhhhCCCCccchhhCCcccCccc-ccceeeccCCCccccCcccccccC------CCC-CccCCCCcCCcchhhCCCC-
Confidence 4567777777777777766554321 234566777777766 22221110 111 4577777777777777754
Q ss_pred CCCCCCCCCCcccCCCCCCCccccccCCCCcCCCCCCCCCCC
Q 037631 332 GEKRHDNNGQKHIPTSASKTCTCRFCGEKGHNIRTCPRRNLE 373 (388)
Q Consensus 332 ~~~Cg~~Gh~~~~~~~~~~~~~Cy~CGe~GH~ardCP~~~~s 373 (388)
....||.|++.||..+|||.....
T Consensus 163 ------------------~~~~c~~c~~~~h~~~~C~~~~~~ 186 (261)
T KOG4400|consen 163 ------------------KGGTCFRCGKVGHGSRDCPSKQKS 186 (261)
T ss_pred ------------------CCCccccCCCcceecccCCccccc
Confidence 135677777777777777777654
No 5
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.06 E-value=1.2e-10 Score=107.79 Aligned_cols=82 Identities=26% Similarity=0.518 Sum_probs=68.7
Q ss_pred cccceecccCCCccccCCCCCCCCCCCCCCCcceeeecCCCccccCCCCCC-CCCCCCCCCCCcccCC--CCCCCccccc
Q 037631 280 GFKCRLCGERGHNRRTCPKSRLSYHNGTVSKHHRCQICRQRGHNRRTCPQV-TGEKRHDNNGQKHIPT--SASKTCTCRF 356 (388)
Q Consensus 280 ~~~C~~CG~~GH~ardCp~~~~~~~~G~~~~~~~C~~CGe~GH~ardCP~~-~~~~Cg~~Gh~~~~~~--~~~~~~~Cy~ 356 (388)
...|++||+.||.++|||. ..|++|...||.+..||.. .|+.||..||++ .+| .......|+.
T Consensus 60 ~~~C~nCg~~GH~~~DCP~-------------~iC~~C~~~~H~s~~C~~~~~C~~Cg~~GH~~-~dC~P~~~~~~~C~~ 125 (190)
T COG5082 60 NPVCFNCGQNGHLRRDCPH-------------SICYNCSWDGHRSNHCPKPKKCYNCGETGHLS-RDCNPSKDQQKSCFD 125 (190)
T ss_pred ccccchhcccCcccccCCh-------------hHhhhcCCCCcccccCCcccccccccccCccc-cccCcccccCcceec
Confidence 3789999999999999993 4899998889999999987 578888888886 345 3345568999
Q ss_pred cCCCCcCCCCCCCCCCCCc
Q 037631 357 CGEKGHNIRTCPRRNLEQL 375 (388)
Q Consensus 357 CGe~GH~ardCP~~~~s~~ 375 (388)
|...+|++++||+..+...
T Consensus 126 C~s~~H~s~~Cp~~~k~y~ 144 (190)
T COG5082 126 CNSTRHSSEDCPSIWKHYV 144 (190)
T ss_pred cCCCccccccCcccccccc
Confidence 9999999999999887543
No 6
>KOG4400 consensus E3 ubiquitin ligase interacting with arginine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=7.3e-10 Score=107.04 Aligned_cols=78 Identities=31% Similarity=0.711 Sum_probs=45.2
Q ss_pred ccceecccCCCccccCCCCCCCCCCCCCCCcceeeecCCCccccCCCCCCCCC--------CCCCCCCCcccCC----CC
Q 037631 281 FKCRLCGERGHNRRTCPKSRLSYHNGTVSKHHRCQICRQRGHNRRTCPQVTGE--------KRHDNNGQKHIPT----SA 348 (388)
Q Consensus 281 ~~C~~CG~~GH~ardCp~~~~~~~~G~~~~~~~C~~CGe~GH~ardCP~~~~~--------~Cg~~Gh~~~~~~----~~ 348 (388)
..|+.||+.||..+.|+.. ...|++|++.||++++||..+.. .|+..+|....+. ..
T Consensus 73 ~~c~~~g~~~~~~~~~~~~-----------~~~c~~C~~~gH~~~~c~~~~~~~~~~~~~~~c~~~gh~~~~~~~~~~~~ 141 (261)
T KOG4400|consen 73 VSCYICGEKGHLGRRCTRI-----------AAACFNCGEGGHIERDCPEAGKEGSSETSCYSCGKTGHRGCPDADPVDGP 141 (261)
T ss_pred ceeeecCCCCchhhcCccc-----------chhhhhCCCCccchhhCCcccCcccccceeeccCCCccccCcccccccCC
Confidence 4455555555555555541 24555555555555555554432 2444455441111 11
Q ss_pred CCCccccccCCCCcCCCCCCCC
Q 037631 349 SKTCTCRFCGEKGHNIRTCPRR 370 (388)
Q Consensus 349 ~~~~~Cy~CGe~GH~ardCP~~ 370 (388)
.. +.||+||+.||+.++||++
T Consensus 142 ~~-~~Cy~Cg~~GH~s~~C~~~ 162 (261)
T KOG4400|consen 142 KP-AKCYSCGEQGHISDDCPEN 162 (261)
T ss_pred CC-CccCCCCcCCcchhhCCCC
Confidence 22 6799999999999999975
No 7
>PF00607 Gag_p24: gag gene protein p24 (core nucleocapsid protein); InterPro: IPR000721 The Gag protein from retroviruses, also known as p24, forms the inner protein layer of the nucleocapsid. This protein performs highly complex orchestrated tasks during the assembly, budding, maturation and infection stages of the viral replication cycle. During viral assembly, the proteins form membrane associations and self-associations that ultimately result in budding of an immature virion from the infected cell. Gag precursors also function during viral assembly to selectively bind and package two plus strands of genomic RNA. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro.; GO: 0016032 viral reproduction; PDB: 1BMX_A 1SJH_C 1SJE_C 1U57_A 1FGL_B 1G03_A 2XT1_A 2JO0_A 2L6E_A 2HJL_C ....
Probab=98.37 E-value=5.1e-08 Score=91.88 Aligned_cols=86 Identities=16% Similarity=0.190 Sum_probs=72.0
Q ss_pred cchh-hcccCCc-cccccc--ccchhhhhhccccccccccCCCChhH-----HHHHHHHHHHhhhccchhHHHHHHhcCC
Q 037631 134 PWEN-AHSVSPL-KVKEDD--EVDNLEIKVGVKKKSKRVYHSPPPEV-----GLKISRSLKSLNAKTGLFTKRMKIIHRD 204 (388)
Q Consensus 134 ~~~~-~~~~spl-~ike~~--~~~~~~~~~~~~~k~kR~y~~l~ae~-----~~~~t~~Lk~~na~~~~~s~~~Kal~~~ 204 (388)
.|.+ +++++|. .+..++ |.|+|.++|+ |+|.+++.++ .+||+++|..+|||+++ +.+|+.++.+
T Consensus 111 Aw~~l~~~~~~~~~~~~I~QGp~Epf~dFv~------rl~~a~~~~~~~~~~~~~~~~~L~~eNAN~~C-~~~~~~l~~~ 183 (206)
T PF00607_consen 111 AWRKLPRKGSPGESFTKIKQGPKEPFADFVD------RLQKAIRREQGENEVKNILIRQLAYENANPDC-RRIIRPLGKD 183 (206)
T ss_dssp HHHHHHHHHSSSSTGGGH-S-TTSHHHHHHH------HHHHHHHCSSSTHHHHHHHHHHHHHHTS-HHH-HHHHHHH-TT
T ss_pred hhhcccccccccccHHHhhhccccchHHHHH------HHHHHHhhcccccchhhHHHHHhhhccchHHH-HHHHHccCCC
Confidence 4655 7788888 888887 9999999999 8887776665 47999999999999999 8999999999
Q ss_pred chhHHHHHHHHHhcCChhHHHHH
Q 037631 205 PKLHAQRVAAIKKAKGTAAARKH 227 (388)
Q Consensus 205 p~l~a~rvaA~q~~kG~~~~rr~ 227 (388)
++| ++|+.||++++++.++.+.
T Consensus 184 ~~l-ee~~~~C~~vg~~~~k~~~ 205 (206)
T PF00607_consen 184 APL-EEMIRACQGVGGPSHKAQA 205 (206)
T ss_dssp STH-HHHHHHTTTTSSTTSSSBB
T ss_pred CCH-HHHHHHhhccCCHhhhhhc
Confidence 999 9999999999998876543
No 8
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=97.83 E-value=9.9e-06 Score=48.27 Aligned_cols=17 Identities=53% Similarity=1.212 Sum_probs=12.9
Q ss_pred cccccCCCCcCCCCCCC
Q 037631 353 TCRFCGEKGHNIRTCPR 369 (388)
Q Consensus 353 ~Cy~CGe~GH~ardCP~ 369 (388)
.||+|++.||++++||+
T Consensus 2 ~C~~C~~~GH~~~~Cp~ 18 (18)
T PF00098_consen 2 KCFNCGEPGHIARDCPK 18 (18)
T ss_dssp BCTTTSCSSSCGCTSSS
T ss_pred cCcCCCCcCcccccCcc
Confidence 57777777777777774
No 9
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=97.58 E-value=2.5e-05 Score=46.58 Aligned_cols=17 Identities=41% Similarity=1.069 Sum_probs=11.3
Q ss_pred eeeecCCCccccCCCCC
Q 037631 313 RCQICRQRGHNRRTCPQ 329 (388)
Q Consensus 313 ~C~~CGe~GH~ardCP~ 329 (388)
.||+|++.||++++||+
T Consensus 2 ~C~~C~~~GH~~~~Cp~ 18 (18)
T PF00098_consen 2 KCFNCGEPGHIARDCPK 18 (18)
T ss_dssp BCTTTSCSSSCGCTSSS
T ss_pred cCcCCCCcCcccccCcc
Confidence 56667777777776663
No 10
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=96.43 E-value=0.0018 Score=44.15 Aligned_cols=21 Identities=43% Similarity=1.005 Sum_probs=15.9
Q ss_pred CCccccccCCCCcCCCCCCCC
Q 037631 350 KTCTCRFCGEKGHNIRTCPRR 370 (388)
Q Consensus 350 ~~~~Cy~CGe~GH~ardCP~~ 370 (388)
..+.|+.|++.||+..|||++
T Consensus 7 ~~Y~C~~C~~~GH~i~dCP~~ 27 (32)
T PF13696_consen 7 PGYVCHRCGQKGHWIQDCPTN 27 (32)
T ss_pred CCCEeecCCCCCccHhHCCCC
Confidence 356788888888888888873
No 11
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=96.19 E-value=0.0024 Score=43.51 Aligned_cols=21 Identities=33% Similarity=0.725 Sum_probs=17.9
Q ss_pred cceeeecCCCccccCCCCCCC
Q 037631 311 HHRCQICRQRGHNRRTCPQVT 331 (388)
Q Consensus 311 ~~~C~~CGe~GH~ardCP~~~ 331 (388)
.+.|++|++.||+.++||+..
T Consensus 8 ~Y~C~~C~~~GH~i~dCP~~~ 28 (32)
T PF13696_consen 8 GYVCHRCGQKGHWIQDCPTNK 28 (32)
T ss_pred CCEeecCCCCCccHhHCCCCC
Confidence 578999999999999999843
No 12
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=95.24 E-value=0.018 Score=60.70 Aligned_cols=44 Identities=32% Similarity=0.812 Sum_probs=36.0
Q ss_pred ccccccccccCccccCCCCCcCCCCcCcccceecccCCCccccCCCC
Q 037631 253 RFYCKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCPKS 299 (388)
Q Consensus 253 ~~~Cf~CG~~GH~ar~CP~~~~~~~~~~~~C~~CG~~GH~ardCp~~ 299 (388)
...|.+||..||...+||..... . ...|..||..||++.+|+..
T Consensus 261 ~~~c~~cg~~~H~q~~cp~r~~~-~--~n~c~~cg~~gH~~~dc~~~ 304 (554)
T KOG0119|consen 261 NRACRNCGSTGHKQYDCPGRIPN-T--TNVCKICGPLGHISIDCKVN 304 (554)
T ss_pred cccccccCCCccccccCCccccc-c--cccccccCCcccccccCCCc
Confidence 46899999999999999987321 1 12899999999999999876
No 13
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=94.78 E-value=0.019 Score=49.67 Aligned_cols=45 Identities=33% Similarity=0.708 Sum_probs=36.5
Q ss_pred cCCCCCCCccccccccCCCccccCCCcccCccceeeecccCceee
Q 037631 81 PCPSCRGRGYTPCVECGIERTRSDCSLCNGKGIMTCRQCSGDCVI 125 (388)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 125 (388)
+|+.|+|+|+..-+.-+.......|+.|+|.|...|..|.|.-++
T Consensus 54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~~C~~C~G~G~~ 98 (111)
T PLN03165 54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSLTCTTCQGSGIQ 98 (111)
T ss_pred CCCCCcCcCeEEEEeCCcEEEEEECCCCCCcceeeCCCCCCCEEE
Confidence 788888888877655444556778999999999899999998775
No 14
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=93.56 E-value=0.041 Score=39.79 Aligned_cols=19 Identities=42% Similarity=1.020 Sum_probs=16.7
Q ss_pred CccccccCCCCcCCCCCCC
Q 037631 351 TCTCRFCGEKGHNIRTCPR 369 (388)
Q Consensus 351 ~~~Cy~CGe~GH~ardCP~ 369 (388)
...|.+|++.||+..+||+
T Consensus 4 ~~~CqkC~~~GH~tyeC~~ 22 (42)
T PF13917_consen 4 RVRCQKCGQKGHWTYECPN 22 (42)
T ss_pred CCcCcccCCCCcchhhCCC
Confidence 4679999999999999993
No 15
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=93.21 E-value=0.069 Score=41.51 Aligned_cols=20 Identities=35% Similarity=0.913 Sum_probs=9.8
Q ss_pred CCCceeccccCCCCCCCccc
Q 037631 72 PNGQYIRELPCPSCRGRGYT 91 (388)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~ 91 (388)
|.|.+..+-+||.|+|.|+.
T Consensus 34 ~~~~~~~~~~C~~C~G~G~~ 53 (66)
T PF00684_consen 34 PGGVFQMQQTCPKCGGTGKI 53 (66)
T ss_dssp SSTTEEEEEE-TTTSSSSEE
T ss_pred CCeEEEEEEECCCCcceeeE
Confidence 44445555555555555554
No 16
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.05 E-value=0.063 Score=53.06 Aligned_cols=42 Identities=33% Similarity=0.812 Sum_probs=36.8
Q ss_pred ccCCCCCCCccccccccCCCcccc----------CCCcccCccceeeecccC
Q 037631 80 LPCPSCRGRGYTPCVECGIERTRS----------DCSLCNGKGIMTCRQCSG 121 (388)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~g~~~~~~~~~ 121 (388)
+.|.+|-|.+|.||..|++-+-.. -|+.||--|+..|.-|+.
T Consensus 230 ~~C~~CGg~rFlpC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvrCp~Cs~ 281 (281)
T KOG2824|consen 230 GVCESCGGARFLPCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVRCPVCSN 281 (281)
T ss_pred CcCCCcCCcceEecCCCCCceeeeeeccCCCcEEECcccCCCCceeCCccCC
Confidence 679999999999999998766544 499999999999998863
No 17
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=92.60 E-value=0.075 Score=56.14 Aligned_cols=43 Identities=33% Similarity=0.723 Sum_probs=35.9
Q ss_pred ccceecccCCCccccCCCCCCCCCCCCCCCcceeeecCCCccccCCCCCC
Q 037631 281 FKCRLCGERGHNRRTCPKSRLSYHNGTVSKHHRCQICRQRGHNRRTCPQV 330 (388)
Q Consensus 281 ~~C~~CG~~GH~ardCp~~~~~~~~G~~~~~~~C~~CGe~GH~ardCP~~ 330 (388)
..|.+||..||...+||..... ....|.+|+..||++++|+..
T Consensus 262 ~~c~~cg~~~H~q~~cp~r~~~-------~~n~c~~cg~~gH~~~dc~~~ 304 (554)
T KOG0119|consen 262 RACRNCGSTGHKQYDCPGRIPN-------TTNVCKICGPLGHISIDCKVN 304 (554)
T ss_pred ccccccCCCccccccCCccccc-------ccccccccCCcccccccCCCc
Confidence 6899999999999999986211 133899999999999999876
No 18
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=92.02 E-value=0.089 Score=40.90 Aligned_cols=42 Identities=31% Similarity=0.885 Sum_probs=23.5
Q ss_pred ccCCCCCCCccccccc---cCCCccccCCCcccCcccee----eecccC
Q 037631 80 LPCPSCRGRGYTPCVE---CGIERTRSDCSLCNGKGIMT----CRQCSG 121 (388)
Q Consensus 80 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~----~~~~~~ 121 (388)
..||.|+|+|+..=.. =++-.....|+.|+|+|... |..|.|
T Consensus 16 ~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G 64 (66)
T PF00684_consen 16 KTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKG 64 (66)
T ss_dssp EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTT
T ss_pred cCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCC
Confidence 3677788777764322 13334556788888888764 555554
No 19
>smart00343 ZnF_C2HC zinc finger.
Probab=91.96 E-value=0.075 Score=33.89 Aligned_cols=19 Identities=42% Similarity=1.088 Sum_probs=16.0
Q ss_pred cccccCCCCcCCCCCCCCC
Q 037631 353 TCRFCGEKGHNIRTCPRRN 371 (388)
Q Consensus 353 ~Cy~CGe~GH~ardCP~~~ 371 (388)
.|++|++.||++++||+..
T Consensus 1 ~C~~CG~~GH~~~~C~~~~ 19 (26)
T smart00343 1 KCYNCGKEGHIARDCPKXX 19 (26)
T ss_pred CCccCCCCCcchhhCCccc
Confidence 3899999999999998543
No 20
>PRK14289 chaperone protein DnaJ; Provisional
Probab=91.73 E-value=0.099 Score=53.68 Aligned_cols=55 Identities=36% Similarity=1.005 Sum_probs=41.4
Q ss_pred eeccccCCCCCCCcc------cccccc--------------CCCccccCCCcccCccce---eeecccCceeeccccc
Q 037631 76 YIRELPCPSCRGRGY------TPCVEC--------------GIERTRSDCSLCNGKGIM---TCRQCSGDCVIWEESV 130 (388)
Q Consensus 76 ~~~~~~~~~~~~~~~------~~~~~~--------------~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~ 130 (388)
|-+.-.|+.|.|.|+ ..|..| |+-.....|+.|+|.|.. .|..|.|.-+|-++..
T Consensus 151 ~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~ 228 (386)
T PRK14289 151 VKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEV 228 (386)
T ss_pred EEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEE
Confidence 456789999999997 468888 334445678999998865 5888888888766543
No 21
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=91.09 E-value=0.12 Score=37.41 Aligned_cols=19 Identities=47% Similarity=1.017 Sum_probs=14.8
Q ss_pred cceeeecCCCccccCCCCC
Q 037631 311 HHRCQICRQRGHNRRTCPQ 329 (388)
Q Consensus 311 ~~~C~~CGe~GH~ardCP~ 329 (388)
...|.+|++.||+..+||+
T Consensus 4 ~~~CqkC~~~GH~tyeC~~ 22 (42)
T PF13917_consen 4 RVRCQKCGQKGHWTYECPN 22 (42)
T ss_pred CCcCcccCCCCcchhhCCC
Confidence 4578888888888888883
No 22
>PRK14295 chaperone protein DnaJ; Provisional
Probab=90.89 E-value=0.14 Score=52.74 Aligned_cols=53 Identities=28% Similarity=0.765 Sum_probs=38.3
Q ss_pred eeccccCCCCCCCcc------ccccccCCCc----------cccCCCcccCccce---eeecccCceeeccc
Q 037631 76 YIRELPCPSCRGRGY------TPCVECGIER----------TRSDCSLCNGKGIM---TCRQCSGDCVIWEE 128 (388)
Q Consensus 76 ~~~~~~~~~~~~~~~------~~~~~~~~~~----------~~~~~~~~~~~g~~---~~~~~~~~~~~~~~ 128 (388)
|-+.-.|+.|.|.|+ ..|..|+..- ....|+.|+|.|.. .|..|.|.-+|-++
T Consensus 163 ~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~ 234 (389)
T PRK14295 163 LTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSS 234 (389)
T ss_pred eeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEeccCCCCCCCCceEeee
Confidence 456778999999996 4577777542 34578888888865 48888887776554
No 23
>PRK10767 chaperone protein DnaJ; Provisional
Probab=90.85 E-value=0.16 Score=51.84 Aligned_cols=53 Identities=26% Similarity=0.759 Sum_probs=37.5
Q ss_pred eeccccCCCCCCCccc------cccccCCCc----------cccCCCcccCccce---eeecccCceeeccc
Q 037631 76 YIRELPCPSCRGRGYT------PCVECGIER----------TRSDCSLCNGKGIM---TCRQCSGDCVIWEE 128 (388)
Q Consensus 76 ~~~~~~~~~~~~~~~~------~~~~~~~~~----------~~~~~~~~~~~g~~---~~~~~~~~~~~~~~ 128 (388)
|-+.-.|+.|.|.|.. .|..|+..- ....|+.|+|+|.. .|..|.|.-++-++
T Consensus 139 ~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~ 210 (371)
T PRK10767 139 IPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKE 210 (371)
T ss_pred eeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECCCCCCCCCCCceEeee
Confidence 4567789999999964 677776542 23468888888865 58888887776443
No 24
>smart00343 ZnF_C2HC zinc finger.
Probab=90.60 E-value=0.11 Score=33.16 Aligned_cols=18 Identities=39% Similarity=1.051 Sum_probs=15.6
Q ss_pred eeeecCCCccccCCCCCC
Q 037631 313 RCQICRQRGHNRRTCPQV 330 (388)
Q Consensus 313 ~C~~CGe~GH~ardCP~~ 330 (388)
.|++|++.||++++||..
T Consensus 1 ~C~~CG~~GH~~~~C~~~ 18 (26)
T smart00343 1 KCYNCGKEGHIARDCPKX 18 (26)
T ss_pred CCccCCCCCcchhhCCcc
Confidence 489999999999999844
No 25
>PRK14301 chaperone protein DnaJ; Provisional
Probab=90.50 E-value=0.17 Score=51.79 Aligned_cols=53 Identities=26% Similarity=0.807 Sum_probs=37.6
Q ss_pred eeccccCCCCCCCccc------cccccCCCc----------cccCCCcccCccce---eeecccCceeeccc
Q 037631 76 YIRELPCPSCRGRGYT------PCVECGIER----------TRSDCSLCNGKGIM---TCRQCSGDCVIWEE 128 (388)
Q Consensus 76 ~~~~~~~~~~~~~~~~------~~~~~~~~~----------~~~~~~~~~~~g~~---~~~~~~~~~~~~~~ 128 (388)
|-+...|+.|.|.|+. .|..|...- ....|+.|+|.|.. .|..|.|.-++-++
T Consensus 141 ~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~ 212 (373)
T PRK14301 141 IPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQT 212 (373)
T ss_pred eeecccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecCCCCCCCCCCceeccc
Confidence 5567789999999974 477776542 24568888888864 57778887776554
No 26
>PRK14294 chaperone protein DnaJ; Provisional
Probab=90.47 E-value=0.18 Score=51.40 Aligned_cols=54 Identities=28% Similarity=0.762 Sum_probs=40.2
Q ss_pred ceeccccCCCCCCCccc------cccccCCCc----------cccCCCcccCccce---eeecccCceeeccc
Q 037631 75 QYIRELPCPSCRGRGYT------PCVECGIER----------TRSDCSLCNGKGIM---TCRQCSGDCVIWEE 128 (388)
Q Consensus 75 ~~~~~~~~~~~~~~~~~------~~~~~~~~~----------~~~~~~~~~~~g~~---~~~~~~~~~~~~~~ 128 (388)
.|-+.-.|+.|.|.|.. .|..|...- ....|+.|+|+|.. .|..|.|.-++-++
T Consensus 140 ~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~ 212 (366)
T PRK14294 140 RIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVS 212 (366)
T ss_pred EeeecccCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecCcCCCCCCCceEeecc
Confidence 35567789999999964 577776543 34578888888865 68888888877554
No 27
>PRK14285 chaperone protein DnaJ; Provisional
Probab=90.33 E-value=0.2 Score=51.28 Aligned_cols=54 Identities=26% Similarity=0.698 Sum_probs=39.9
Q ss_pred ceeccccCCCCCCCccc------cccccCCCc----------cccCCCcccCccce---eeecccCceeeccc
Q 037631 75 QYIRELPCPSCRGRGYT------PCVECGIER----------TRSDCSLCNGKGIM---TCRQCSGDCVIWEE 128 (388)
Q Consensus 75 ~~~~~~~~~~~~~~~~~------~~~~~~~~~----------~~~~~~~~~~~g~~---~~~~~~~~~~~~~~ 128 (388)
.|-+...|+.|+|.|.. .|..|...- ....|+.|+|.|.. .|..|.|.-++-++
T Consensus 142 ~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~ 214 (365)
T PRK14285 142 NITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKK 214 (365)
T ss_pred EeeecccCCCCCCcccCCCCCCccCCCccCceeEEecCceeEEeeecCCCCCcccccCCCCCCCCCCCEEecc
Confidence 35567899999999964 578887643 34578888888864 58888888877554
No 28
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.16 E-value=0.16 Score=51.35 Aligned_cols=84 Identities=26% Similarity=0.594 Sum_probs=44.3
Q ss_pred CCCCCCCCcchhhcCCCCCCCCCCCCCCCCCCcccccCCCceec---------cccCCCCCCCc--------cccccccC
Q 037631 35 KQNQLGYDPSEELLGLGVDLKPRNAAPSTPKPRSWFGPNGQYIR---------ELPCPSCRGRG--------YTPCVECG 97 (388)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~--------~~~~~~~~ 97 (388)
...+-|+.|- |. ++|+.|+-..--.+--+-.+=||---+. ..-|+.|+|-| -+-|+-|-
T Consensus 149 dG~~hg~~pr--lw--~~d~~~~gp~mf~~~~~~~~vphs~~v~~ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~ 224 (406)
T KOG2813|consen 149 DGTIHGFHPR--LW--GTDKCSRGPGMFSGVAHPAVVPHSMIVTFCHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCT 224 (406)
T ss_pred CCcccccCcc--cc--ccccccCCCCcccccccceeccchHhhhhhhcccCCCceeccCcCCCCccccccCcceeccccc
Confidence 3445555552 33 3366665544333333444444422211 23477777777 55566654
Q ss_pred C-----CccccCCCcccCccceeeecccCc
Q 037631 98 I-----ERTRSDCSLCNGKGIMTCRQCSGD 122 (388)
Q Consensus 98 ~-----~~~~~~~~~~~~~g~~~~~~~~~~ 122 (388)
+ +-+.--|.+|+|+|+..|.-|+|-
T Consensus 225 G~~~~k~gt~~~C~~C~G~G~~~C~tC~gr 254 (406)
T KOG2813|consen 225 GVPPPKIGTHDLCYMCHGRGIKECHTCKGR 254 (406)
T ss_pred CCCCCCCCccchhhhccCCCcccCCcccCC
Confidence 3 334455777777777777666654
No 29
>PRK14293 chaperone protein DnaJ; Provisional
Probab=90.10 E-value=0.21 Score=51.14 Aligned_cols=54 Identities=35% Similarity=0.805 Sum_probs=39.6
Q ss_pred ceeccccCCCCCCCcccc------ccccCCCcc--------------ccCCCcccCccce---eeecccCceeeccc
Q 037631 75 QYIRELPCPSCRGRGYTP------CVECGIERT--------------RSDCSLCNGKGIM---TCRQCSGDCVIWEE 128 (388)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~--------------~~~~~~~~~~g~~---~~~~~~~~~~~~~~ 128 (388)
.|-+.-+|+.|.|.|+.. |..|...-. ...|+.|.|.|.. .|..|.|..+|=++
T Consensus 139 ~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~ 215 (374)
T PRK14293 139 RIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVT 215 (374)
T ss_pred EeeccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccccc
Confidence 466778999999999864 777765532 2368888888865 68888887777554
No 30
>PRK14284 chaperone protein DnaJ; Provisional
Probab=90.05 E-value=0.19 Score=51.72 Aligned_cols=52 Identities=29% Similarity=0.673 Sum_probs=38.3
Q ss_pred eccccCCCCCCCccc------cccccCCCcc----------ccCCCcccCccce---eeecccCceeeccc
Q 037631 77 IRELPCPSCRGRGYT------PCVECGIERT----------RSDCSLCNGKGIM---TCRQCSGDCVIWEE 128 (388)
Q Consensus 77 ~~~~~~~~~~~~~~~------~~~~~~~~~~----------~~~~~~~~~~g~~---~~~~~~~~~~~~~~ 128 (388)
-+.-.|+.|.|.|.. .|..|+..-. ...|+.|+|.|.. .|..|.|.-+|-++
T Consensus 156 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~ 226 (391)
T PRK14284 156 SGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDK 226 (391)
T ss_pred eeeccCCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccCCcCCCCCCcceecce
Confidence 466789999999874 4788875532 3578888888864 58888888777543
No 31
>PRK14296 chaperone protein DnaJ; Provisional
Probab=90.02 E-value=0.25 Score=50.70 Aligned_cols=53 Identities=28% Similarity=0.680 Sum_probs=40.0
Q ss_pred eeccccCCCCCCCccc------cccccCCCc--------------cccCCCcccCcccee---eecccCceeeccc
Q 037631 76 YIRELPCPSCRGRGYT------PCVECGIER--------------TRSDCSLCNGKGIMT---CRQCSGDCVIWEE 128 (388)
Q Consensus 76 ~~~~~~~~~~~~~~~~------~~~~~~~~~--------------~~~~~~~~~~~g~~~---~~~~~~~~~~~~~ 128 (388)
|-+.-.|+.|.|.|.. .|..|+..- ....|+.|+|.|... |..|.|.-++-++
T Consensus 146 ~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~ 221 (372)
T PRK14296 146 LDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLER 221 (372)
T ss_pred EeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEEE
Confidence 4456789999999974 588887542 235799999999764 8899988877654
No 32
>PRK14282 chaperone protein DnaJ; Provisional
Probab=89.86 E-value=0.21 Score=51.08 Aligned_cols=54 Identities=31% Similarity=0.788 Sum_probs=39.4
Q ss_pred ceeccccCCCCCCCccc------cccccCCC--------------ccccCCCcccCccce---eeecccCceeeccc
Q 037631 75 QYIRELPCPSCRGRGYT------PCVECGIE--------------RTRSDCSLCNGKGIM---TCRQCSGDCVIWEE 128 (388)
Q Consensus 75 ~~~~~~~~~~~~~~~~~------~~~~~~~~--------------~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~ 128 (388)
.|-+...|+.|.|.|+. .|..|+.. .....|+.|+|+|.. .|..|.|.-+|=++
T Consensus 148 ~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~ 224 (369)
T PRK14282 148 EYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRR 224 (369)
T ss_pred EeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEEEE
Confidence 35567789999999864 57888543 234478888888864 58888888777664
No 33
>PRK14286 chaperone protein DnaJ; Provisional
Probab=89.70 E-value=0.21 Score=51.14 Aligned_cols=53 Identities=32% Similarity=0.795 Sum_probs=39.2
Q ss_pred eeccccCCCCCCCcc------ccccccCCCc----------cccCCCcccCccce---eeecccCceeeccc
Q 037631 76 YIRELPCPSCRGRGY------TPCVECGIER----------TRSDCSLCNGKGIM---TCRQCSGDCVIWEE 128 (388)
Q Consensus 76 ~~~~~~~~~~~~~~~------~~~~~~~~~~----------~~~~~~~~~~~g~~---~~~~~~~~~~~~~~ 128 (388)
|-+.-.|+.|.|.|+ +.|..|...- ....|+.|.|.|.. .|..|.|.-++-++
T Consensus 147 ~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~ 218 (372)
T PRK14286 147 IPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKR 218 (372)
T ss_pred eeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEecccCCCCCCCcEEecc
Confidence 556778999999996 5677777542 34478888888864 58888888777654
No 34
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=89.46 E-value=0.25 Score=50.00 Aligned_cols=55 Identities=29% Similarity=0.778 Sum_probs=38.9
Q ss_pred ceeccccCCCCCCCcc------ccccccCCCc--------------cccCCCcccCccce---eeecccCceeecccc
Q 037631 75 QYIRELPCPSCRGRGY------TPCVECGIER--------------TRSDCSLCNGKGIM---TCRQCSGDCVIWEES 129 (388)
Q Consensus 75 ~~~~~~~~~~~~~~~~------~~~~~~~~~~--------------~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~ 129 (388)
.|-+.-.|+.|.|.|. ..|..|++.- ....|+.|+|+|.. .|..|.|.-+|=++.
T Consensus 139 ~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~ 216 (354)
T TIGR02349 139 EIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERK 216 (354)
T ss_pred EeecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEecccc
Confidence 3556778999999994 5677777532 12368888888864 488888877776553
No 35
>PRK14300 chaperone protein DnaJ; Provisional
Probab=89.46 E-value=0.24 Score=50.71 Aligned_cols=53 Identities=28% Similarity=0.773 Sum_probs=36.8
Q ss_pred eeccccCCCCCCCcc------ccccccCCCc----------cccCCCcccCccce---eeecccCceeeccc
Q 037631 76 YIRELPCPSCRGRGY------TPCVECGIER----------TRSDCSLCNGKGIM---TCRQCSGDCVIWEE 128 (388)
Q Consensus 76 ~~~~~~~~~~~~~~~------~~~~~~~~~~----------~~~~~~~~~~~g~~---~~~~~~~~~~~~~~ 128 (388)
|-+.-.|+.|.|.|+ +.|.+|...- ....|+.|+|.|.. .|..|.|.-+|=++
T Consensus 142 ~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~ 213 (372)
T PRK14300 142 FSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQ 213 (372)
T ss_pred eeeccccCCCCCcccCCCCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeCCCCCCCCCceEEEee
Confidence 556678999999885 4566776542 23468888888865 47888887776554
No 36
>PRK14298 chaperone protein DnaJ; Provisional
Probab=89.37 E-value=0.24 Score=50.84 Aligned_cols=53 Identities=34% Similarity=0.799 Sum_probs=40.0
Q ss_pred eeccccCCCCCCCcc------ccccccCCCc--------------cccCCCcccCccce---eeecccCceeeccc
Q 037631 76 YIRELPCPSCRGRGY------TPCVECGIER--------------TRSDCSLCNGKGIM---TCRQCSGDCVIWEE 128 (388)
Q Consensus 76 ~~~~~~~~~~~~~~~------~~~~~~~~~~--------------~~~~~~~~~~~g~~---~~~~~~~~~~~~~~ 128 (388)
|-+...|+.|.|.|. ..|..|...- ....|+.|+|.|.. .|..|.|.-++=++
T Consensus 138 ~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~ 213 (377)
T PRK14298 138 VPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKT 213 (377)
T ss_pred EEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEE
Confidence 556778999999997 5688887543 34578889988864 58888888877554
No 37
>PRK14280 chaperone protein DnaJ; Provisional
Probab=89.32 E-value=0.26 Score=50.58 Aligned_cols=53 Identities=32% Similarity=0.804 Sum_probs=39.5
Q ss_pred eeccccCCCCCCCcc------ccccccCCCc--------------cccCCCcccCccce---eeecccCceeeccc
Q 037631 76 YIRELPCPSCRGRGY------TPCVECGIER--------------TRSDCSLCNGKGIM---TCRQCSGDCVIWEE 128 (388)
Q Consensus 76 ~~~~~~~~~~~~~~~------~~~~~~~~~~--------------~~~~~~~~~~~g~~---~~~~~~~~~~~~~~ 128 (388)
|-+.-.|+.|.|.|. ..|..|++.- ....|+.|+|+|.. .|.+|.|.-+|-++
T Consensus 140 ~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~ 215 (376)
T PRK14280 140 IPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKR 215 (376)
T ss_pred EeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEEEE
Confidence 456778999999995 5688887542 23479999999874 48889888877543
No 38
>PRK14277 chaperone protein DnaJ; Provisional
Probab=89.07 E-value=0.24 Score=50.91 Aligned_cols=53 Identities=28% Similarity=0.674 Sum_probs=39.4
Q ss_pred eeccccCCCCCCCcc------ccccccCCCc--------------cccCCCcccCccce---eeecccCceeeccc
Q 037631 76 YIRELPCPSCRGRGY------TPCVECGIER--------------TRSDCSLCNGKGIM---TCRQCSGDCVIWEE 128 (388)
Q Consensus 76 ~~~~~~~~~~~~~~~------~~~~~~~~~~--------------~~~~~~~~~~~g~~---~~~~~~~~~~~~~~ 128 (388)
|-+.-.|+.|.|.|+ ..|..|...- ....|+.|.|.|.. .|..|.|.-+|=++
T Consensus 152 ~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~ 227 (386)
T PRK14277 152 VERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRR 227 (386)
T ss_pred EEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEeee
Confidence 556778999999996 4588887552 22478888888876 48889888877443
No 39
>PRK14297 chaperone protein DnaJ; Provisional
Probab=88.97 E-value=0.27 Score=50.42 Aligned_cols=52 Identities=29% Similarity=0.808 Sum_probs=33.4
Q ss_pred eeccccCCCCCCCccc------cccccCCCc--------------cccCCCcccCccce---eeecccCceeecc
Q 037631 76 YIRELPCPSCRGRGYT------PCVECGIER--------------TRSDCSLCNGKGIM---TCRQCSGDCVIWE 127 (388)
Q Consensus 76 ~~~~~~~~~~~~~~~~------~~~~~~~~~--------------~~~~~~~~~~~g~~---~~~~~~~~~~~~~ 127 (388)
|-+...|+.|.|.|.. .|..|...- ....|+.|+|+|.. .|..|.|.-++=+
T Consensus 145 ~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~ 219 (380)
T PRK14297 145 VTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRK 219 (380)
T ss_pred eeeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEe
Confidence 5567789999999974 466665441 23457777777754 4666666555433
No 40
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=88.68 E-value=0.33 Score=50.76 Aligned_cols=54 Identities=33% Similarity=0.795 Sum_probs=40.3
Q ss_pred eeccccCCCCCCCcc-----ccccccCCCc--------------cccCCCcccCccce-----eeecccCceeecccc
Q 037631 76 YIRELPCPSCRGRGY-----TPCVECGIER--------------TRSDCSLCNGKGIM-----TCRQCSGDCVIWEES 129 (388)
Q Consensus 76 ~~~~~~~~~~~~~~~-----~~~~~~~~~~--------------~~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~ 129 (388)
|-+...|+.|.|.|. ..|..|++.- ....|+.|+|.|.. .|..|.|.-+|-++.
T Consensus 147 ~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~ 224 (421)
T PTZ00037 147 INKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRK 224 (421)
T ss_pred eeccccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeee
Confidence 556778999999885 4588887543 34579999999864 599999988886653
No 41
>PRK14278 chaperone protein DnaJ; Provisional
Probab=88.22 E-value=0.34 Score=49.80 Aligned_cols=54 Identities=30% Similarity=0.757 Sum_probs=40.1
Q ss_pred ceeccccCCCCCCCcc------ccccccCCCc--------------cccCCCcccCccce---eeecccCceeeccc
Q 037631 75 QYIRELPCPSCRGRGY------TPCVECGIER--------------TRSDCSLCNGKGIM---TCRQCSGDCVIWEE 128 (388)
Q Consensus 75 ~~~~~~~~~~~~~~~~------~~~~~~~~~~--------------~~~~~~~~~~~g~~---~~~~~~~~~~~~~~ 128 (388)
.|-+...|+.|.|.|. ..|..|...- ....|+.|+|.|.. .|..|.|.-++=++
T Consensus 135 ~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~ 211 (378)
T PRK14278 135 TVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRAR 211 (378)
T ss_pred EEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEecc
Confidence 3566779999999996 4688887542 13478889998864 58888888877554
No 42
>PRK14290 chaperone protein DnaJ; Provisional
Probab=87.51 E-value=0.49 Score=48.31 Aligned_cols=17 Identities=41% Similarity=0.946 Sum_probs=13.2
Q ss_pred eeccccCCCCCCCcccc
Q 037631 76 YIRELPCPSCRGRGYTP 92 (388)
Q Consensus 76 ~~~~~~~~~~~~~~~~~ 92 (388)
|-+...|+.|.|.|+..
T Consensus 146 ~~r~~~C~~C~G~g~~~ 162 (365)
T PRK14290 146 YRRNAMCPDCSGTGAKN 162 (365)
T ss_pred eeecccCCCCccccCCC
Confidence 44567899999999753
No 43
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=87.35 E-value=0.34 Score=43.72 Aligned_cols=37 Identities=32% Similarity=0.837 Sum_probs=31.0
Q ss_pred ccCCCCCCCccccccccCCCc-----------cccCCCcccCccceee
Q 037631 80 LPCPSCRGRGYTPCVECGIER-----------TRSDCSLCNGKGIMTC 116 (388)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~g~~~~ 116 (388)
.+|..|-|.+|.||..|++-+ .-.-|+.||--|++.|
T Consensus 100 ~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~~c 147 (147)
T cd03031 100 GVCEGCGGARFVPCSECNGSCKVFAENATAAGGFLRCPECNENGLVRC 147 (147)
T ss_pred CCCCCCCCcCeEECCCCCCcceEEeccCcccccEEECCCCCccccccC
Confidence 479999999999999998743 2467999999998766
No 44
>PRK14283 chaperone protein DnaJ; Provisional
Probab=86.97 E-value=0.44 Score=48.84 Aligned_cols=53 Identities=30% Similarity=0.760 Sum_probs=35.0
Q ss_pred eeccccCCCCCCCccc------cccccCCCcc--------------ccCCCcccCccce---eeecccCceeeccc
Q 037631 76 YIRELPCPSCRGRGYT------PCVECGIERT--------------RSDCSLCNGKGIM---TCRQCSGDCVIWEE 128 (388)
Q Consensus 76 ~~~~~~~~~~~~~~~~------~~~~~~~~~~--------------~~~~~~~~~~g~~---~~~~~~~~~~~~~~ 128 (388)
|-+...|+.|.|.|.. .|.+|...-. ...|+.|.|.|.. .|..|.|.-++-++
T Consensus 143 ~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~ 218 (378)
T PRK14283 143 VRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRET 218 (378)
T ss_pred eeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeeccc
Confidence 4566789999998864 4666665422 2357777777754 57777776666544
No 45
>PRK14276 chaperone protein DnaJ; Provisional
Probab=86.48 E-value=0.46 Score=48.84 Aligned_cols=54 Identities=30% Similarity=0.739 Sum_probs=38.2
Q ss_pred ceeccccCCCCCCCcc------ccccccCCCc--------------cccCCCcccCccce---eeecccCceeeccc
Q 037631 75 QYIRELPCPSCRGRGY------TPCVECGIER--------------TRSDCSLCNGKGIM---TCRQCSGDCVIWEE 128 (388)
Q Consensus 75 ~~~~~~~~~~~~~~~~------~~~~~~~~~~--------------~~~~~~~~~~~g~~---~~~~~~~~~~~~~~ 128 (388)
.|-+.-.|+.|.|.|. ..|..|+..- ....|+.|.|.|.. .|.+|.|.-++=++
T Consensus 142 ~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~ 218 (380)
T PRK14276 142 SYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQA 218 (380)
T ss_pred EeeccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEEEE
Confidence 3566778999999996 4577776542 23468888888864 58888887776443
No 46
>PRK14287 chaperone protein DnaJ; Provisional
Probab=86.43 E-value=0.44 Score=48.80 Aligned_cols=52 Identities=33% Similarity=0.815 Sum_probs=35.1
Q ss_pred eeccccCCCCCCCccc------cccccCCCc--------------cccCCCcccCccce---eeecccCceeecc
Q 037631 76 YIRELPCPSCRGRGYT------PCVECGIER--------------TRSDCSLCNGKGIM---TCRQCSGDCVIWE 127 (388)
Q Consensus 76 ~~~~~~~~~~~~~~~~------~~~~~~~~~--------------~~~~~~~~~~~g~~---~~~~~~~~~~~~~ 127 (388)
|-+.-.|+.|.|.|+. .|..|...- ....|+.|.|+|.. .|..|.|.-+|=+
T Consensus 135 ~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~ 209 (371)
T PRK14287 135 IPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRK 209 (371)
T ss_pred EeeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEee
Confidence 4566789999999864 466666442 23467888888764 4777877766643
No 47
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.03 E-value=1.1 Score=47.27 Aligned_cols=68 Identities=21% Similarity=0.419 Sum_probs=50.9
Q ss_pred ccccccccccCccccCCCCCcCCCCcCcccceecccCCCccccCCCCCCCCCCCCCCCcceeeecCCCccccCCCCCCCC
Q 037631 253 RFYCKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCPKSRLSYHNGTVSKHHRCQICRQRGHNRRTCPQVTG 332 (388)
Q Consensus 253 ~~~Cf~CG~~GH~ar~CP~~~~~~~~~~~~C~~CG~~GH~ardCp~~~~~~~~G~~~~~~~C~~CGe~GH~ardCP~~~~ 332 (388)
...++.++..||..+.+..... .+|..|-..+|+...|...... ...+.|++|+..||+...||....
T Consensus 112 ~q~~~~~~~~~~~~~~~t~~~~------~~~~~~~~~~~~iq~~~~~g~P------ppsy~c~rc~~~g~wikacptv~~ 179 (448)
T KOG0314|consen 112 IQMNGRMGGRGFGMRRQTPPPG------YVCHRCNSPGHFIQHCSTNGSP------PPSYKCVKCPTPGPWIKACPTVSG 179 (448)
T ss_pred hhhccccccCCcccccCCCccc------ceeeecccCccccccccccCCC------CCCcceecCCCCCccceeccccCC
Confidence 3478888999998888844332 6888888899988888765332 235788888888888888887653
No 48
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=85.97 E-value=0.29 Score=36.00 Aligned_cols=24 Identities=38% Similarity=0.887 Sum_probs=19.2
Q ss_pred hccccccccccccccCccccCCCC
Q 037631 248 AMKGVRFYCKHCGREGHRKFYCPE 271 (388)
Q Consensus 248 ~~~g~~~~Cf~CG~~GH~ar~CP~ 271 (388)
.+.+.+..|++||..||...+||.
T Consensus 26 ~YE~lp~~C~~C~~~gH~~~~C~k 49 (49)
T PF14392_consen 26 KYERLPRFCFHCGRIGHSDKECPK 49 (49)
T ss_pred EECCcChhhcCCCCcCcCHhHcCC
Confidence 355667789999999999998873
No 49
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.42 E-value=0.98 Score=47.66 Aligned_cols=47 Identities=23% Similarity=0.550 Sum_probs=33.3
Q ss_pred ccccccccccCccccCCCCCcCCCCcCcccceecccCCCccccCCCCCC
Q 037631 253 RFYCKHCGREGHRKFYCPELKDGLTDRGFKCRLCGERGHNRRTCPKSRL 301 (388)
Q Consensus 253 ~~~Cf~CG~~GH~ar~CP~~~~~~~~~~~~C~~CG~~GH~ardCp~~~~ 301 (388)
..+|..|-..+|+...|..... ..-...|++|+..||+...||....
T Consensus 133 ~~~~~~~~~~~~~iq~~~~~g~--Pppsy~c~rc~~~g~wikacptv~~ 179 (448)
T KOG0314|consen 133 GYVCHRCNSPGHFIQHCSTNGS--PPPSYKCVKCPTPGPWIKACPTVSG 179 (448)
T ss_pred cceeeecccCccccccccccCC--CCCCcceecCCCCCccceeccccCC
Confidence 4578888888888888865332 1123678888888888888887643
No 50
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=84.79 E-value=0.49 Score=47.38 Aligned_cols=26 Identities=27% Similarity=0.689 Sum_probs=20.6
Q ss_pred CccccccCCCCcCCCCCCCCCCCCcc
Q 037631 351 TCTCRFCGEKGHNIRTCPRRNLEQLK 376 (388)
Q Consensus 351 ~~~Cy~CGe~GH~ardCP~~~~s~~~ 376 (388)
...||.||++|||+++||....+...
T Consensus 160 q~~cyrcGkeghwskEcP~~~~~rva 185 (346)
T KOG0109|consen 160 QSGCYRCGKEGHWSKECPVDRTGRVA 185 (346)
T ss_pred HHHheeccccccccccCCccCCCccc
Confidence 34699999999999999988876543
No 51
>PRK14279 chaperone protein DnaJ; Provisional
Probab=84.77 E-value=0.73 Score=47.61 Aligned_cols=54 Identities=28% Similarity=0.719 Sum_probs=36.2
Q ss_pred eeccccCCCCCCCccc------cccccCCCc----------cccCCCcccCccce---eeecccCceeecccc
Q 037631 76 YIRELPCPSCRGRGYT------PCVECGIER----------TRSDCSLCNGKGIM---TCRQCSGDCVIWEES 129 (388)
Q Consensus 76 ~~~~~~~~~~~~~~~~------~~~~~~~~~----------~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~ 129 (388)
|-+.-.|+.|.|.|+. .|..|...- ....|+.|+|+|.. .|..|.|.-+|-++.
T Consensus 170 ~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~~ 242 (392)
T PRK14279 170 LTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTR 242 (392)
T ss_pred eeccccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeCCcCCCCCCCeEEEEee
Confidence 4566789999999974 466666432 23467777777754 477777777665543
No 52
>PRK14290 chaperone protein DnaJ; Provisional
Probab=84.31 E-value=0.71 Score=47.14 Aligned_cols=34 Identities=41% Similarity=1.085 Sum_probs=20.0
Q ss_pred ccCCCCCCCcc---------------ccccccCCCc--cccCCCcccCccc
Q 037631 80 LPCPSCRGRGY---------------TPCVECGIER--TRSDCSLCNGKGI 113 (388)
Q Consensus 80 ~~~~~~~~~~~---------------~~~~~~~~~~--~~~~~~~~~~~g~ 113 (388)
-.||.|+|.|. +.|..|++.- ....|+.|+|+|+
T Consensus 166 ~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 216 (365)
T PRK14290 166 ITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGT 216 (365)
T ss_pred ccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCCCCcee
Confidence 46888888884 3455554322 2344666666655
No 53
>PRK14288 chaperone protein DnaJ; Provisional
Probab=84.13 E-value=0.78 Score=47.00 Aligned_cols=52 Identities=31% Similarity=0.747 Sum_probs=29.8
Q ss_pred eeccccCCCCCCCccc-----cccccCCCc----------cccCCCcccCccc---eeeecccCceeecc
Q 037631 76 YIRELPCPSCRGRGYT-----PCVECGIER----------TRSDCSLCNGKGI---MTCRQCSGDCVIWE 127 (388)
Q Consensus 76 ~~~~~~~~~~~~~~~~-----~~~~~~~~~----------~~~~~~~~~~~g~---~~~~~~~~~~~~~~ 127 (388)
|-+.-.|+.|.|.|.. .|..|+..- ....|+.|.|+|. ..|..|.|.-+|-+
T Consensus 137 ~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~ 206 (369)
T PRK14288 137 VQYQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIKTPCQACKGKTYILK 206 (369)
T ss_pred EEeeccCCCCCCcccCCCCCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEccccCccCCCcceEEE
Confidence 4455689999998854 455554322 1224666666663 23666666555443
No 54
>PRK14281 chaperone protein DnaJ; Provisional
Probab=83.94 E-value=0.71 Score=47.76 Aligned_cols=53 Identities=28% Similarity=0.771 Sum_probs=34.4
Q ss_pred eeccccCCCCCCCccc-----cccccCCCcc--------------ccCCCcccCccce---eeecccCceeeccc
Q 037631 76 YIRELPCPSCRGRGYT-----PCVECGIERT--------------RSDCSLCNGKGIM---TCRQCSGDCVIWEE 128 (388)
Q Consensus 76 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~--------------~~~~~~~~~~g~~---~~~~~~~~~~~~~~ 128 (388)
|-+.-.|+.|.|.|.. .|..|+..-. ...|+.|.|.|.. .|..|.|..+|=++
T Consensus 160 ~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~ 234 (397)
T PRK14281 160 IKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGE 234 (397)
T ss_pred EEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEecc
Confidence 4566789999999975 4666654421 2357777777753 46677776666554
No 55
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=83.55 E-value=0.62 Score=46.82 Aligned_cols=21 Identities=33% Similarity=0.686 Sum_probs=18.0
Q ss_pred cceeeecCCCccccCCCCCCC
Q 037631 311 HHRCQICRQRGHNRRTCPQVT 331 (388)
Q Consensus 311 ~~~C~~CGe~GH~ardCP~~~ 331 (388)
++.||+||+.||+..+||...
T Consensus 176 gY~CyRCGqkgHwIqnCpTN~ 196 (427)
T COG5222 176 GYVCYRCGQKGHWIQNCPTNQ 196 (427)
T ss_pred ceeEEecCCCCchhhcCCCCC
Confidence 578999999999999998765
No 56
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=82.53 E-value=0.74 Score=46.29 Aligned_cols=24 Identities=38% Similarity=0.814 Sum_probs=20.6
Q ss_pred CCCccccccCCCCcCCCCCCCCCC
Q 037631 349 SKTCTCRFCGEKGHNIRTCPRRNL 372 (388)
Q Consensus 349 ~~~~~Cy~CGe~GH~ardCP~~~~ 372 (388)
...+.||+||++|||..+||-+.-
T Consensus 174 PpgY~CyRCGqkgHwIqnCpTN~D 197 (427)
T COG5222 174 PPGYVCYRCGQKGHWIQNCPTNQD 197 (427)
T ss_pred CCceeEEecCCCCchhhcCCCCCC
Confidence 356789999999999999997763
No 57
>PRK14301 chaperone protein DnaJ; Provisional
Probab=82.52 E-value=0.76 Score=47.14 Aligned_cols=35 Identities=37% Similarity=0.883 Sum_probs=27.0
Q ss_pred ccCCCCCCCcc-----------ccccccCCCc--cccCCCcccCccce
Q 037631 80 LPCPSCRGRGY-----------TPCVECGIER--TRSDCSLCNGKGIM 114 (388)
Q Consensus 80 ~~~~~~~~~~~-----------~~~~~~~~~~--~~~~~~~~~~~g~~ 114 (388)
..|+.|+|+|. ++|..|+..- ....|+.|+|+|+.
T Consensus 162 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 209 (373)
T PRK14301 162 ETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKCKGSGIV 209 (373)
T ss_pred cccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecCCCCCCCCCCcee
Confidence 46899999886 4788887554 35679999999974
No 58
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=82.38 E-value=0.73 Score=47.01 Aligned_cols=52 Identities=31% Similarity=0.650 Sum_probs=43.2
Q ss_pred cccCCCCCCCccccccccCCC----ccccCCCcccCccce-----eeecccCceeeccccc
Q 037631 79 ELPCPSCRGRGYTPCVECGIE----RTRSDCSLCNGKGIM-----TCRQCSGDCVIWEESV 130 (388)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~ 130 (388)
..+|+.|+|+|..-=...... ..++.|..|+|.|.- .|..|+|..++=+..+
T Consensus 143 ~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kki 203 (337)
T KOG0712|consen 143 APKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKI 203 (337)
T ss_pred CCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhhhhhhe
Confidence 347999999988766665555 888999999999998 9999999999877665
No 59
>PRK14291 chaperone protein DnaJ; Provisional
Probab=82.32 E-value=0.94 Score=46.58 Aligned_cols=53 Identities=32% Similarity=0.937 Sum_probs=36.2
Q ss_pred eeccccCCCCCCCcc------ccccccCCCc----------cccCCCcccCccce--eeecccCceeeccc
Q 037631 76 YIRELPCPSCRGRGY------TPCVECGIER----------TRSDCSLCNGKGIM--TCRQCSGDCVIWEE 128 (388)
Q Consensus 76 ~~~~~~~~~~~~~~~------~~~~~~~~~~----------~~~~~~~~~~~g~~--~~~~~~~~~~~~~~ 128 (388)
|-+...|+.|.|.|. ..|..|...- ....|+.|+|.|.. .|..|.|.-+|=++
T Consensus 153 ~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~C~~C~G~g~v~~~ 223 (382)
T PRK14291 153 VPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVLREPCSKCNGRGLVIKK 223 (382)
T ss_pred EeeeccCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceEEccCCCCCCCCceEEee
Confidence 456778999999995 4577776432 24567777777742 47777777776554
No 60
>PRK14292 chaperone protein DnaJ; Provisional
Probab=82.30 E-value=0.95 Score=46.24 Aligned_cols=54 Identities=24% Similarity=0.621 Sum_probs=37.7
Q ss_pred ceeccccCCCCCCCcc-------ccccccCCCcc--------------ccCCCcccCccce---eeecccCceeeccc
Q 037631 75 QYIRELPCPSCRGRGY-------TPCVECGIERT--------------RSDCSLCNGKGIM---TCRQCSGDCVIWEE 128 (388)
Q Consensus 75 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~--------------~~~~~~~~~~g~~---~~~~~~~~~~~~~~ 128 (388)
.|-+.-.|+.|.|.|+ ..|..|+.... ...|+.|+|.|+. .|..|.|.-++-++
T Consensus 135 ~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~ 212 (371)
T PRK14292 135 EVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKA 212 (371)
T ss_pred EEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEeec
Confidence 3556778999999885 45777766432 2368888888865 58888887766443
No 61
>PRK14284 chaperone protein DnaJ; Provisional
Probab=82.16 E-value=0.86 Score=47.01 Aligned_cols=35 Identities=40% Similarity=0.993 Sum_probs=26.8
Q ss_pred ccCCCCCCCcc-----------ccccccCCCc--cccCCCcccCccce
Q 037631 80 LPCPSCRGRGY-----------TPCVECGIER--TRSDCSLCNGKGIM 114 (388)
Q Consensus 80 ~~~~~~~~~~~-----------~~~~~~~~~~--~~~~~~~~~~~g~~ 114 (388)
-.|+.|.|.|+ ..|..|+..- ....|+.|.|+|+.
T Consensus 176 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 223 (391)
T PRK14284 176 KVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVITDPCSVCRGQGRI 223 (391)
T ss_pred eecCccCCeeEEEEEeceEEEEEECCCCCCCCcccCCcCCCCCCccee
Confidence 46888888887 5788887654 34569999999974
No 62
>PRK14289 chaperone protein DnaJ; Provisional
Probab=82.08 E-value=0.91 Score=46.68 Aligned_cols=36 Identities=36% Similarity=0.992 Sum_probs=27.8
Q ss_pred cccCCCCCCCccc---------------cccccCCCc--cccCCCcccCccce
Q 037631 79 ELPCPSCRGRGYT---------------PCVECGIER--TRSDCSLCNGKGIM 114 (388)
Q Consensus 79 ~~~~~~~~~~~~~---------------~~~~~~~~~--~~~~~~~~~~~g~~ 114 (388)
.-.|+.|+|+|+. +|..|+..- ....|..|.|+|+.
T Consensus 171 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 223 (386)
T PRK14289 171 SETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIV 223 (386)
T ss_pred CCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEE
Confidence 4679999998875 588886553 45679999999983
No 63
>PRK14297 chaperone protein DnaJ; Provisional
Probab=81.66 E-value=0.96 Score=46.46 Aligned_cols=35 Identities=34% Similarity=0.869 Sum_probs=26.9
Q ss_pred ccCCCCCCCccc---------------cccccCCCc--cccCCCcccCccce
Q 037631 80 LPCPSCRGRGYT---------------PCVECGIER--TRSDCSLCNGKGIM 114 (388)
Q Consensus 80 ~~~~~~~~~~~~---------------~~~~~~~~~--~~~~~~~~~~~g~~ 114 (388)
-.|+.|+|+|+. .|..|+... ....|..|+|+|+.
T Consensus 166 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 217 (380)
T PRK14297 166 KTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKV 217 (380)
T ss_pred ccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEE
Confidence 469999999864 588887654 34569999999963
No 64
>PRK10767 chaperone protein DnaJ; Provisional
Probab=80.44 E-value=1.2 Score=45.62 Aligned_cols=35 Identities=31% Similarity=0.898 Sum_probs=26.8
Q ss_pred ccCCCCCCCccc-----------cccccCCCc--cccCCCcccCccce
Q 037631 80 LPCPSCRGRGYT-----------PCVECGIER--TRSDCSLCNGKGIM 114 (388)
Q Consensus 80 ~~~~~~~~~~~~-----------~~~~~~~~~--~~~~~~~~~~~g~~ 114 (388)
-.|+.|+|+|.. .|..|+..- ....|+.|+|+|..
T Consensus 160 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 207 (371)
T PRK10767 160 KTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRV 207 (371)
T ss_pred ccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECCCCCCCCCCCceE
Confidence 479999998865 488887553 34679999999984
No 65
>PRK14298 chaperone protein DnaJ; Provisional
Probab=80.25 E-value=1.3 Score=45.63 Aligned_cols=36 Identities=36% Similarity=0.901 Sum_probs=23.6
Q ss_pred ccCCCCCCCcc---------------ccccccCCCc--cccCCCcccCcccee
Q 037631 80 LPCPSCRGRGY---------------TPCVECGIER--TRSDCSLCNGKGIMT 115 (388)
Q Consensus 80 ~~~~~~~~~~~---------------~~~~~~~~~~--~~~~~~~~~~~g~~~ 115 (388)
-.|+.|+|.|. +.|..|+..- ....|+.|.|+|..+
T Consensus 159 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 211 (377)
T PRK14298 159 KRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVR 211 (377)
T ss_pred CcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEE
Confidence 34666666664 2466665432 345799999999853
No 66
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=79.90 E-value=0.57 Score=34.41 Aligned_cols=17 Identities=35% Similarity=0.952 Sum_probs=10.2
Q ss_pred ceeeecCCCccccCCCC
Q 037631 312 HRCQICRQRGHNRRTCP 328 (388)
Q Consensus 312 ~~C~~CGe~GH~ardCP 328 (388)
..|+.||..||..++||
T Consensus 32 ~~C~~C~~~gH~~~~C~ 48 (49)
T PF14392_consen 32 RFCFHCGRIGHSDKECP 48 (49)
T ss_pred hhhcCCCCcCcCHhHcC
Confidence 45666666666666665
No 67
>PF15288 zf-CCHC_6: Zinc knuckle
Probab=79.78 E-value=0.9 Score=32.63 Aligned_cols=19 Identities=37% Similarity=0.922 Sum_probs=12.8
Q ss_pred ceeeecCCCcccc--CCCCCC
Q 037631 312 HRCQICRQRGHNR--RTCPQV 330 (388)
Q Consensus 312 ~~C~~CGe~GH~a--rdCP~~ 330 (388)
..|.+||..||.+ +.||-.
T Consensus 2 ~kC~~CG~~GH~~t~k~CP~~ 22 (40)
T PF15288_consen 2 VKCKNCGAFGHMRTNKRCPMY 22 (40)
T ss_pred ccccccccccccccCccCCCC
Confidence 4677777777776 457754
No 68
>PRK14285 chaperone protein DnaJ; Provisional
Probab=78.44 E-value=1.5 Score=44.80 Aligned_cols=35 Identities=34% Similarity=0.786 Sum_probs=25.1
Q ss_pred ccCCCCCCCcc-----------ccccccCCCc--cccCCCcccCccce
Q 037631 80 LPCPSCRGRGY-----------TPCVECGIER--TRSDCSLCNGKGIM 114 (388)
Q Consensus 80 ~~~~~~~~~~~-----------~~~~~~~~~~--~~~~~~~~~~~g~~ 114 (388)
-.|+.|+|+|. +.|..|+..- ....|+.|+|+|..
T Consensus 164 ~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 211 (365)
T PRK14285 164 SICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSL 211 (365)
T ss_pred ccCCCccCceeEEecCceeEEeeecCCCCCcccccCCCCCCCCCCCEE
Confidence 35888888774 3677776544 34579999999974
No 69
>PRK14296 chaperone protein DnaJ; Provisional
Probab=78.42 E-value=1.4 Score=45.25 Aligned_cols=34 Identities=32% Similarity=0.797 Sum_probs=22.8
Q ss_pred ccCCCCCCCccc---------------cccccCCCc--cccCCCcccCccc
Q 037631 80 LPCPSCRGRGYT---------------PCVECGIER--TRSDCSLCNGKGI 113 (388)
Q Consensus 80 ~~~~~~~~~~~~---------------~~~~~~~~~--~~~~~~~~~~~g~ 113 (388)
..|+.|.|+|.. .|..|+..- ....|+.|+|+|.
T Consensus 167 ~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~ 217 (372)
T PRK14296 167 HICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGK 217 (372)
T ss_pred ccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceE
Confidence 347777777653 566665433 3556999999996
No 70
>PF15288 zf-CCHC_6: Zinc knuckle
Probab=78.19 E-value=1.5 Score=31.49 Aligned_cols=23 Identities=30% Similarity=0.707 Sum_probs=19.2
Q ss_pred ccccccCCCCcCC--CCCCCCCCCC
Q 037631 352 CTCRFCGEKGHNI--RTCPRRNLEQ 374 (388)
Q Consensus 352 ~~Cy~CGe~GH~a--rdCP~~~~s~ 374 (388)
+.|.+||..||.. +.||......
T Consensus 2 ~kC~~CG~~GH~~t~k~CP~~~~~~ 26 (40)
T PF15288_consen 2 VKCKNCGAFGHMRTNKRCPMYCWSG 26 (40)
T ss_pred ccccccccccccccCccCCCCCCCC
Confidence 5799999999998 7899887543
No 71
>PRK14286 chaperone protein DnaJ; Provisional
Probab=77.91 E-value=1.4 Score=45.28 Aligned_cols=36 Identities=31% Similarity=0.865 Sum_probs=26.5
Q ss_pred ccCCCCCCCccc-----------cccccCCCc--cccCCCcccCcccee
Q 037631 80 LPCPSCRGRGYT-----------PCVECGIER--TRSDCSLCNGKGIMT 115 (388)
Q Consensus 80 ~~~~~~~~~~~~-----------~~~~~~~~~--~~~~~~~~~~~g~~~ 115 (388)
-.|+.|+|+|+. .|..|+..- ....|+.|+|+|+..
T Consensus 168 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~ 216 (372)
T PRK14286 168 TTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVISNPCKTCGGQGLQE 216 (372)
T ss_pred ccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEecccCCCCCCCcEEe
Confidence 468888888853 688887552 345699999999854
No 72
>PRK14288 chaperone protein DnaJ; Provisional
Probab=77.86 E-value=1.7 Score=44.63 Aligned_cols=35 Identities=29% Similarity=0.799 Sum_probs=26.3
Q ss_pred ccCCCCCCCccc-----------cccccCCCc--cccCCCcccCccce
Q 037631 80 LPCPSCRGRGYT-----------PCVECGIER--TRSDCSLCNGKGIM 114 (388)
Q Consensus 80 ~~~~~~~~~~~~-----------~~~~~~~~~--~~~~~~~~~~~g~~ 114 (388)
-.|+.|.|+|.. .|.+|+... ....|+.|+|+|+.
T Consensus 157 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 204 (369)
T PRK14288 157 ETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIKTPCQACKGKTYI 204 (369)
T ss_pred cCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEccccCccCCCcceE
Confidence 458888888863 588887654 35669999999873
No 73
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=77.66 E-value=1 Score=45.77 Aligned_cols=57 Identities=30% Similarity=0.691 Sum_probs=37.0
Q ss_pred ccCCCCCC---Cc---cccccccCCCccccCCCcccCccceeeecccCceeeccccccCCcchh
Q 037631 80 LPCPSCRG---RG---YTPCVECGIERTRSDCSLCNGKGIMTCRQCSGDCVIWEESVDEQPWEN 137 (388)
Q Consensus 80 ~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (388)
.-|++|-| ++ =+.|..|. ++-.+-|+-|.|.|..+|.-|+|.--+..-++----|+.
T Consensus 218 m~c~sc~G~~~~k~gt~~~C~~C~-G~G~~~C~tC~grG~k~C~TC~gtgsll~~t~~vV~wKn 280 (406)
T KOG2813|consen 218 MHCMSCTGVPPPKIGTHDLCYMCH-GRGIKECHTCKGRGKKPCTTCSGTGSLLNYTRIVVYWKN 280 (406)
T ss_pred eecccccCCCCCCCCccchhhhcc-CCCcccCCcccCCCCcccccccCccceeeeEEEEEEeec
Confidence 34666655 22 23455554 344456777889999999999998877766665555643
No 74
>PRK14278 chaperone protein DnaJ; Provisional
Probab=77.40 E-value=1.6 Score=44.90 Aligned_cols=23 Identities=30% Similarity=0.742 Sum_probs=15.2
Q ss_pred cccccCCCc--cccCCCcccCccce
Q 037631 92 PCVECGIER--TRSDCSLCNGKGIM 114 (388)
Q Consensus 92 ~~~~~~~~~--~~~~~~~~~~~g~~ 114 (388)
.|..|+..- ....|+.|+|+|..
T Consensus 184 ~C~~C~G~G~~~~~~C~~C~G~g~v 208 (378)
T PRK14278 184 PCPTCRGVGEVIPDPCHECAGDGRV 208 (378)
T ss_pred ECCCCCccceeeCCCCCCCCCceeE
Confidence 455554332 24569999999974
No 75
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=76.52 E-value=1.7 Score=44.09 Aligned_cols=36 Identities=42% Similarity=1.003 Sum_probs=27.5
Q ss_pred cccCCCCCCCcc---------------ccccccCCCcc--ccCCCcccCccce
Q 037631 79 ELPCPSCRGRGY---------------TPCVECGIERT--RSDCSLCNGKGIM 114 (388)
Q Consensus 79 ~~~~~~~~~~~~---------------~~~~~~~~~~~--~~~~~~~~~~g~~ 114 (388)
.-.|+.|+|.|+ ..|..|+.... ...|+.|.|+|..
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 212 (354)
T TIGR02349 160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRV 212 (354)
T ss_pred CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEe
Confidence 356999999885 46888876543 4579999999974
No 76
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=76.51 E-value=1.8 Score=45.38 Aligned_cols=36 Identities=31% Similarity=0.818 Sum_probs=28.3
Q ss_pred cccCCCCCCCcc---------------ccccccCCCccc----cCCCcccCccce
Q 037631 79 ELPCPSCRGRGY---------------TPCVECGIERTR----SDCSLCNGKGIM 114 (388)
Q Consensus 79 ~~~~~~~~~~~~---------------~~~~~~~~~~~~----~~~~~~~~~g~~ 114 (388)
.-.|+.|+|+|+ +.|..|+..-.. ..|+.|+|+|..
T Consensus 166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v 220 (421)
T PTZ00037 166 FVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVK 220 (421)
T ss_pred CccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCccee
Confidence 357999999995 379999766543 469999999975
No 77
>PRK14279 chaperone protein DnaJ; Provisional
Probab=75.83 E-value=1.5 Score=45.27 Aligned_cols=35 Identities=34% Similarity=0.981 Sum_probs=22.8
Q ss_pred ccCCCCCCCccc-----------cccccCCCc--cccCCCcccCccce
Q 037631 80 LPCPSCRGRGYT-----------PCVECGIER--TRSDCSLCNGKGIM 114 (388)
Q Consensus 80 ~~~~~~~~~~~~-----------~~~~~~~~~--~~~~~~~~~~~g~~ 114 (388)
-.|+.|+|+|.. .|..|+..- ....|..|.|+|..
T Consensus 191 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v 238 (392)
T PRK14279 191 KVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIEDPCEECKGTGVT 238 (392)
T ss_pred CCCCCCcceEEEEEEecceEEEEecCCCCceeEEeCCcCCCCCCCeEE
Confidence 357777777653 577775433 34568888888864
No 78
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=75.67 E-value=1.4 Score=44.35 Aligned_cols=22 Identities=27% Similarity=0.700 Sum_probs=19.4
Q ss_pred CcceeeecCCCccccCCCCCCC
Q 037631 310 KHHRCQICRQRGHNRRTCPQVT 331 (388)
Q Consensus 310 ~~~~C~~CGe~GH~ardCP~~~ 331 (388)
..-.||+||+.||++++||...
T Consensus 159 Dq~~cyrcGkeghwskEcP~~~ 180 (346)
T KOG0109|consen 159 DQSGCYRCGKEGHWSKECPVDR 180 (346)
T ss_pred CHHHheeccccccccccCCccC
Confidence 4567999999999999999876
No 79
>PRK14294 chaperone protein DnaJ; Provisional
Probab=74.74 E-value=2.1 Score=43.82 Aligned_cols=35 Identities=37% Similarity=0.870 Sum_probs=24.8
Q ss_pred ccCCCCCCCcc-----------ccccccCCCc--cccCCCcccCccce
Q 037631 80 LPCPSCRGRGY-----------TPCVECGIER--TRSDCSLCNGKGIM 114 (388)
Q Consensus 80 ~~~~~~~~~~~-----------~~~~~~~~~~--~~~~~~~~~~~g~~ 114 (388)
-.|+.|+|+|. +.|..|++.. ....|+.|+|+|..
T Consensus 162 ~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 209 (366)
T PRK14294 162 TTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRV 209 (366)
T ss_pred ccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecCcCCCCCCCceEe
Confidence 45777777775 3577776544 34679999999974
No 80
>PRK14281 chaperone protein DnaJ; Provisional
Probab=74.32 E-value=2.2 Score=44.14 Aligned_cols=36 Identities=42% Similarity=1.013 Sum_probs=27.1
Q ss_pred cccCCCCCCCcc---------------ccccccCCCc--cccCCCcccCccce
Q 037631 79 ELPCPSCRGRGY---------------TPCVECGIER--TRSDCSLCNGKGIM 114 (388)
Q Consensus 79 ~~~~~~~~~~~~---------------~~~~~~~~~~--~~~~~~~~~~~g~~ 114 (388)
.-.|+.|+|+|. +.|..|+..- ....|+.|.|+|+.
T Consensus 179 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 231 (397)
T PRK14281 179 TETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIK 231 (397)
T ss_pred CccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccE
Confidence 346888888885 3588887554 35679999999985
No 81
>PRK14295 chaperone protein DnaJ; Provisional
Probab=72.80 E-value=2.1 Score=44.22 Aligned_cols=34 Identities=35% Similarity=0.983 Sum_probs=22.2
Q ss_pred cCCCCCCCcc-----------ccccccCCCc--cccCCCcccCccce
Q 037631 81 PCPSCRGRGY-----------TPCVECGIER--TRSDCSLCNGKGIM 114 (388)
Q Consensus 81 ~~~~~~~~~~-----------~~~~~~~~~~--~~~~~~~~~~~g~~ 114 (388)
.|+.|+|+|. ..|..|+..- ....|..|.|+|..
T Consensus 185 ~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~ 231 (389)
T PRK14295 185 VCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADDPCLVCKGSGRA 231 (389)
T ss_pred CCCCCCCEeEEEEEecceEEEEecCCCcceeEEeccCCCCCCCCceE
Confidence 4666666664 3566665443 34569999999873
No 82
>PRK14291 chaperone protein DnaJ; Provisional
Probab=72.63 E-value=2.5 Score=43.54 Aligned_cols=35 Identities=46% Similarity=1.080 Sum_probs=24.5
Q ss_pred ccCCCCCCCcc-----------ccccccCCCc-cccCCCcccCccce
Q 037631 80 LPCPSCRGRGY-----------TPCVECGIER-TRSDCSLCNGKGIM 114 (388)
Q Consensus 80 ~~~~~~~~~~~-----------~~~~~~~~~~-~~~~~~~~~~~g~~ 114 (388)
-.||.|+|.|. +.|..|+..- ....|+.|+|+|+.
T Consensus 174 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~C~~C~G~g~v 220 (382)
T PRK14291 174 KVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVLREPCSKCNGRGLV 220 (382)
T ss_pred ccCCCCCCceEEEEecceEEEEecCCCCCCceEEccCCCCCCCCceE
Confidence 35888888875 3677775543 34569999998873
No 83
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=72.28 E-value=2.3 Score=43.93 Aligned_cols=53 Identities=28% Similarity=0.765 Sum_probs=34.7
Q ss_pred eeccccCCCCCCCcc------ccccccCC------------CccccCCCcccCcccee---eecccCceeeccc
Q 037631 76 YIRELPCPSCRGRGY------TPCVECGI------------ERTRSDCSLCNGKGIMT---CRQCSGDCVIWEE 128 (388)
Q Consensus 76 ~~~~~~~~~~~~~~~------~~~~~~~~------------~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~ 128 (388)
|-+.-.|+.|.|.|. ..|..|+. -.....|+.|+|.|-.. |.+|-|.-+|-+.
T Consensus 139 ~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~ 212 (371)
T COG0484 139 VTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKK 212 (371)
T ss_pred cceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCCCCCCCCeEeee
Confidence 445566777777744 34555543 33456788888888764 8888888776543
No 84
>PRK14287 chaperone protein DnaJ; Provisional
Probab=72.19 E-value=2.4 Score=43.52 Aligned_cols=36 Identities=31% Similarity=0.791 Sum_probs=26.0
Q ss_pred ccCCCCCCCcc---------------ccccccCCCc--cccCCCcccCcccee
Q 037631 80 LPCPSCRGRGY---------------TPCVECGIER--TRSDCSLCNGKGIMT 115 (388)
Q Consensus 80 ~~~~~~~~~~~---------------~~~~~~~~~~--~~~~~~~~~~~g~~~ 115 (388)
-.|+.|+|.|+ +.|..|...- ....|+.|.|+|...
T Consensus 156 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 208 (371)
T PRK14287 156 ETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVR 208 (371)
T ss_pred cccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEe
Confidence 45888888886 3577786543 356799999999753
No 85
>PRK14282 chaperone protein DnaJ; Provisional
Probab=71.93 E-value=2.7 Score=43.06 Aligned_cols=35 Identities=34% Similarity=0.920 Sum_probs=23.6
Q ss_pred ccCCCCCCCccc---------------cccccCCCc--cccCCCcccCccce
Q 037631 80 LPCPSCRGRGYT---------------PCVECGIER--TRSDCSLCNGKGIM 114 (388)
Q Consensus 80 ~~~~~~~~~~~~---------------~~~~~~~~~--~~~~~~~~~~~g~~ 114 (388)
-.|+.|+|.|+. .|..|+..- ....|+.|+|+|+.
T Consensus 170 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 221 (369)
T PRK14282 170 VTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRI 221 (369)
T ss_pred cCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeE
Confidence 357777777753 366665433 34569999999974
No 86
>PRK14276 chaperone protein DnaJ; Provisional
Probab=69.43 E-value=3.2 Score=42.70 Aligned_cols=35 Identities=29% Similarity=0.766 Sum_probs=24.0
Q ss_pred ccCCCCCCCccc---------------cccccCCCc--cccCCCcccCccce
Q 037631 80 LPCPSCRGRGYT---------------PCVECGIER--TRSDCSLCNGKGIM 114 (388)
Q Consensus 80 ~~~~~~~~~~~~---------------~~~~~~~~~--~~~~~~~~~~~g~~ 114 (388)
-.|+.|+|.|+. +|..|+..- ....|+.|+|+|+.
T Consensus 164 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~ 215 (380)
T PRK14276 164 VTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHE 215 (380)
T ss_pred ccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEE
Confidence 357777777652 466665432 34569999999984
No 87
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=69.04 E-value=2.3 Score=40.07 Aligned_cols=31 Identities=32% Similarity=0.860 Sum_probs=22.1
Q ss_pred eeccccCCCCCCCccccccccCCCccccCCCcccCccc
Q 037631 76 YIRELPCPSCRGRGYTPCVECGIERTRSDCSLCNGKGI 113 (388)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 113 (388)
|-+.-.||.|+|.|+..=. ..-|+.|+|.|.
T Consensus 96 y~~~~~C~~C~G~G~~i~~-------~~~C~~C~G~G~ 126 (186)
T TIGR02642 96 VLNSCKCPRCRGTGLIQRR-------QRECDTCAGTGR 126 (186)
T ss_pred HHcCCcCCCCCCeeEEecC-------CCCCCCCCCccE
Confidence 5568899999999986411 134667778887
No 88
>PRK14280 chaperone protein DnaJ; Provisional
Probab=68.25 E-value=3.5 Score=42.32 Aligned_cols=35 Identities=31% Similarity=0.850 Sum_probs=24.8
Q ss_pred ccCCCCCCCccc---------------cccccCCCc--cccCCCcccCccce
Q 037631 80 LPCPSCRGRGYT---------------PCVECGIER--TRSDCSLCNGKGIM 114 (388)
Q Consensus 80 ~~~~~~~~~~~~---------------~~~~~~~~~--~~~~~~~~~~~g~~ 114 (388)
-.|+.|+|.|.. .|..|...- ....|+.|+|+|..
T Consensus 161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 212 (376)
T PRK14280 161 ETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKV 212 (376)
T ss_pred ccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEE
Confidence 358888887752 577776543 24569999999974
No 89
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=67.89 E-value=2.8 Score=43.39 Aligned_cols=36 Identities=33% Similarity=0.816 Sum_probs=25.5
Q ss_pred ccccCCCCCCCc-------------cccccccCCCcccc--CCCcccCccc
Q 037631 78 RELPCPSCRGRG-------------YTPCVECGIERTRS--DCSLCNGKGI 113 (388)
Q Consensus 78 ~~~~~~~~~~~~-------------~~~~~~~~~~~~~~--~~~~~~~~g~ 113 (388)
.-..||+|+|.| .+.|..|+..-.-. -|+.|+|+|-
T Consensus 158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~ 208 (371)
T COG0484 158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGR 208 (371)
T ss_pred CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCCCCCCCCe
Confidence 445677777777 34677777655444 7999999987
No 90
>PRK14292 chaperone protein DnaJ; Provisional
Probab=66.94 E-value=3.9 Score=41.78 Aligned_cols=22 Identities=32% Similarity=0.859 Sum_probs=15.2
Q ss_pred ccccCCCc--cccCCCcccCccce
Q 037631 93 CVECGIER--TRSDCSLCNGKGIM 114 (388)
Q Consensus 93 ~~~~~~~~--~~~~~~~~~~~g~~ 114 (388)
|..|.... ....|+.|+|+|+.
T Consensus 186 C~~C~G~G~~~~~~C~~C~G~g~v 209 (371)
T PRK14292 186 CPTCRGEGQIITDPCTVCRGRGRT 209 (371)
T ss_pred cCCCcccceecCCCCCCCCCceEE
Confidence 55554332 35679999999975
No 91
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=66.50 E-value=4.8 Score=34.92 Aligned_cols=25 Identities=40% Similarity=0.938 Sum_probs=19.8
Q ss_pred cccCCCCCCCccccccccCCCccccCCCcccCcccee
Q 037631 79 ELPCPSCRGRGYTPCVECGIERTRSDCSLCNGKGIMT 115 (388)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 115 (388)
.-.|+.|.|.|+. .|+.|+|.|..+
T Consensus 41 ~v~C~~C~GsG~~------------~C~~C~G~G~v~ 65 (111)
T PLN03165 41 TQPCFPCSGTGAQ------------VCRFCVGSGNVT 65 (111)
T ss_pred CCCCCCCCCCCCc------------CCCCCcCcCeEE
Confidence 4579999999984 577888888755
No 92
>PRK14277 chaperone protein DnaJ; Provisional
Probab=65.89 E-value=4.1 Score=42.02 Aligned_cols=35 Identities=34% Similarity=0.907 Sum_probs=24.6
Q ss_pred ccCCCCCCCccc---------------cccccCCCc--cccCCCcccCccce
Q 037631 80 LPCPSCRGRGYT---------------PCVECGIER--TRSDCSLCNGKGIM 114 (388)
Q Consensus 80 ~~~~~~~~~~~~---------------~~~~~~~~~--~~~~~~~~~~~g~~ 114 (388)
-.|+.|+|+|.. .|..|+..- ....|+.|+|+|+.
T Consensus 173 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 224 (386)
T PRK14277 173 VTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRI 224 (386)
T ss_pred ccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEE
Confidence 357777777752 477776543 34579999999984
No 93
>PF14787 zf-CCHC_5: GAG-polyprotein viral zinc-finger; PDB: 1CL4_A 1DSV_A.
Probab=65.52 E-value=3.7 Score=28.87 Aligned_cols=21 Identities=24% Similarity=0.446 Sum_probs=13.0
Q ss_pred ccccccCCCCcCCCCCCCCCC
Q 037631 352 CTCRFCGEKGHNIRTCPRRNL 372 (388)
Q Consensus 352 ~~Cy~CGe~GH~ardCP~~~~ 372 (388)
..|.+|++-.|++.||-....
T Consensus 3 ~~CprC~kg~Hwa~~C~sk~d 23 (36)
T PF14787_consen 3 GLCPRCGKGFHWASECRSKTD 23 (36)
T ss_dssp -C-TTTSSSCS-TTT---TCC
T ss_pred ccCcccCCCcchhhhhhhhhc
Confidence 469999999999999976654
No 94
>PRK14293 chaperone protein DnaJ; Provisional
Probab=64.53 E-value=4.4 Score=41.58 Aligned_cols=22 Identities=27% Similarity=0.827 Sum_probs=14.2
Q ss_pred ccccCCCc--cccCCCcccCccce
Q 037631 93 CVECGIER--TRSDCSLCNGKGIM 114 (388)
Q Consensus 93 ~~~~~~~~--~~~~~~~~~~~g~~ 114 (388)
|..|...- ....|..|.|+|+.
T Consensus 189 C~~C~G~G~~~~~~C~~C~G~g~v 212 (374)
T PRK14293 189 CPTCNGTGQVIEDPCDACGGQGVK 212 (374)
T ss_pred CCCCCcceeEeccCCCCCCCCccc
Confidence 55554332 23469999999973
No 95
>PRK14300 chaperone protein DnaJ; Provisional
Probab=63.73 E-value=4.7 Score=41.33 Aligned_cols=35 Identities=29% Similarity=0.777 Sum_probs=24.3
Q ss_pred ccCCCCCCCcc-----------ccccccCCCc--cccCCCcccCccce
Q 037631 80 LPCPSCRGRGY-----------TPCVECGIER--TRSDCSLCNGKGIM 114 (388)
Q Consensus 80 ~~~~~~~~~~~-----------~~~~~~~~~~--~~~~~~~~~~~g~~ 114 (388)
-.||.|+|.|- .+|..|...- ....|+.|.|+|..
T Consensus 163 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 210 (372)
T PRK14300 163 TTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRY 210 (372)
T ss_pred ccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeCCCCCCCCCceEE
Confidence 36788887773 3577775432 34579999999984
No 96
>PRK14283 chaperone protein DnaJ; Provisional
Probab=61.41 E-value=5.2 Score=41.12 Aligned_cols=35 Identities=40% Similarity=1.007 Sum_probs=23.4
Q ss_pred ccCCCCCCCccc---------------cccccCCCc--cccCCCcccCccce
Q 037631 80 LPCPSCRGRGYT---------------PCVECGIER--TRSDCSLCNGKGIM 114 (388)
Q Consensus 80 ~~~~~~~~~~~~---------------~~~~~~~~~--~~~~~~~~~~~g~~ 114 (388)
-.|+.|+|.|.. .|..|+..- ....|..|+|+|+.
T Consensus 164 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 215 (378)
T PRK14283 164 KTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVV 215 (378)
T ss_pred ccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceee
Confidence 457777777653 366665432 24569999999984
No 97
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=59.70 E-value=7.3 Score=44.86 Aligned_cols=64 Identities=23% Similarity=0.395 Sum_probs=38.3
Q ss_pred CCcchhhcCCCCCCCCCCCCCCCCCCcccccCCCceeccccCCCCCCCccccccccCCCccccCCCcccCccc
Q 037631 41 YDPSEELLGLGVDLKPRNAAPSTPKPRSWFGPNGQYIRELPCPSCRGRGYTPCVECGIERTRSDCSLCNGKGI 113 (388)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 113 (388)
||+.-.||---.+-+++. .--++|-+|- ..--||.|.|.||..=--==..-....|+.|+||..
T Consensus 707 ~d~iR~lfa~~~~a~~~g------~~~~~FSfN~---~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~ 770 (924)
T TIGR00630 707 FDEIRELFAETPEAKARG------YTPGRFSFNV---KGGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRY 770 (924)
T ss_pred HHHHHHHHhcCCccccCC------CChhhcCCCC---CCCCCCCCccceEEEEEccCCCCcccCCCCcCCcee
Confidence 355556664433333332 3446787776 466799999999986100001223457888888876
No 98
>PF14787 zf-CCHC_5: GAG-polyprotein viral zinc-finger; PDB: 1CL4_A 1DSV_A.
Probab=59.24 E-value=5.6 Score=27.97 Aligned_cols=17 Identities=29% Similarity=0.698 Sum_probs=6.6
Q ss_pred ccccccccCccccCCCC
Q 037631 255 YCKHCGREGHRKFYCPE 271 (388)
Q Consensus 255 ~Cf~CG~~GH~ar~CP~ 271 (388)
.|++|++-.|++.+|..
T Consensus 4 ~CprC~kg~Hwa~~C~s 20 (36)
T PF14787_consen 4 LCPRCGKGFHWASECRS 20 (36)
T ss_dssp C-TTTSSSCS-TTT---
T ss_pred cCcccCCCcchhhhhhh
Confidence 45555555555555544
No 99
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=56.99 E-value=5.2 Score=43.78 Aligned_cols=43 Identities=47% Similarity=1.079 Sum_probs=27.3
Q ss_pred eeccccCCCCCCCc----cccccccCCCccccCCCcccCccceeeecccCceeecccc
Q 037631 76 YIRELPCPSCRGRG----YTPCVECGIERTRSDCSLCNGKGIMTCRQCSGDCVIWEES 129 (388)
Q Consensus 76 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 129 (388)
+-.+.|||-|+|+| |..|.+||+--- +++|.-|.-.-+-|++-
T Consensus 50 ~~~~~pc~~c~gkG~V~v~~~c~~c~G~gk-----------v~~c~~cG~~~~~~~~~ 96 (715)
T COG1107 50 ASFEIPCPKCRGKGTVTVYDTCPECGGTGK-----------VLTCDICGDIIVPWEEG 96 (715)
T ss_pred ccCCCCCCeeccceeEEEEeecccCCCcee-----------EEeeccccceecCcccc
Confidence 33588999999998 677777774443 34455554444445443
No 100
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=49.67 E-value=9 Score=26.68 Aligned_cols=17 Identities=53% Similarity=1.470 Sum_probs=13.5
Q ss_pred cCCCCCCC------ccccccccC
Q 037631 81 PCPSCRGR------GYTPCVECG 97 (388)
Q Consensus 81 ~~~~~~~~------~~~~~~~~~ 97 (388)
+|+-|+.+ |+.+|.+||
T Consensus 10 ~C~~C~~~~~~~~dG~~yC~~cG 32 (36)
T PF11781_consen 10 PCPVCGSRWFYSDDGFYYCDRCG 32 (36)
T ss_pred cCCCCCCeEeEccCCEEEhhhCc
Confidence 48888775 788888888
No 101
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=48.63 E-value=19 Score=41.70 Aligned_cols=62 Identities=27% Similarity=0.476 Sum_probs=36.2
Q ss_pred CcchhhcCCCCCCCCCCCCCCCCCCcccccCCCceeccccCCCCCCCccccccccC-CCccccCCCcccCccc
Q 037631 42 DPSEELLGLGVDLKPRNAAPSTPKPRSWFGPNGQYIRELPCPSCRGRGYTPCVECG-IERTRSDCSLCNGKGI 113 (388)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~ 113 (388)
|..-+||.-..+-+++. ..-++|-.|. ..--||.|.|.||..= +=+ .......|+.|+|+..
T Consensus 710 d~iR~lfa~~~~a~~~g------~~~~~FS~N~---~~G~C~~C~G~G~~~~-~~~f~~~~~~~C~~C~G~R~ 772 (943)
T PRK00349 710 DPIRELFAGTPEAKARG------YKPGRFSFNV---KGGRCEACQGDGVIKI-EMHFLPDVYVPCDVCKGKRY 772 (943)
T ss_pred HHHHHHhccCccccccC------CCcccCCCCC---CCCCCCcccccceEEE-EeccCCCccccCccccCccc
Confidence 66667775433333322 2234566665 4568999999998761 111 1123456888888866
No 102
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=41.25 E-value=14 Score=45.37 Aligned_cols=72 Identities=19% Similarity=0.313 Sum_probs=44.0
Q ss_pred cCCCCCCCC----CcchhhcCCCCCCCCCCCCCCCCCCcccccCCCceeccccCCCCCCCccccccccCCCccccCCCcc
Q 037631 33 VPKQNQLGY----DPSEELLGLGVDLKPRNAAPSTPKPRSWFGPNGQYIRELPCPSCRGRGYTPCVECGIERTRSDCSLC 108 (388)
Q Consensus 33 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (388)
+|+++...| |+.-+||.--.+-+- ++.-.++|--|. +.--||.|.|.||..---==++-...-|+.|
T Consensus 1566 t~RS~paTY~g~fd~IR~lFA~~~~ak~------rg~~~~~FSfN~---~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C 1636 (1809)
T PRK00635 1566 SQRSDISTYFDIAPSLRNFYASLTQAKA------LNISASMFSTNT---KQGQCSDCWGLGYQWIDRAFYALEKRPCPTC 1636 (1809)
T ss_pred CCCCchhhhhhhHHHHHHHHhcCHHHHH------cCCCcccccccC---CCCCCCCCccCceEEEecccCCCcccCCCCC
Confidence 344444443 566666654333332 233446787785 5678999999999653221234556679999
Q ss_pred cCccc
Q 037631 109 NGKGI 113 (388)
Q Consensus 109 ~~~g~ 113 (388)
+||..
T Consensus 1637 ~G~R~ 1641 (1809)
T PRK00635 1637 SGFRI 1641 (1809)
T ss_pred CCcCC
Confidence 99965
No 103
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=40.25 E-value=22 Score=39.51 Aligned_cols=42 Identities=29% Similarity=0.759 Sum_probs=26.7
Q ss_pred ccCCCCC---CCccccccccCCCccccCCCccc---CccceeeecccC
Q 037631 80 LPCPSCR---GRGYTPCVECGIERTRSDCSLCN---GKGIMTCRQCSG 121 (388)
Q Consensus 80 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~ 121 (388)
+.||.|. -.|...|.+||..-....|+.|. -.|...|.+|.-
T Consensus 2 ~~Cp~Cg~~n~~~akFC~~CG~~l~~~~Cp~CG~~~~~~~~fC~~CG~ 49 (645)
T PRK14559 2 LICPQCQFENPNNNRFCQKCGTSLTHKPCPQCGTEVPVDEAHCPNCGA 49 (645)
T ss_pred CcCCCCCCcCCCCCccccccCCCCCCCcCCCCCCCCCcccccccccCC
Confidence 4577773 45677788887654444566663 446667777753
No 104
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=38.68 E-value=17 Score=28.35 Aligned_cols=34 Identities=26% Similarity=0.719 Sum_probs=27.3
Q ss_pred ccccCCCCCCCc-cccccccCCCccccCCCcccCcc
Q 037631 78 RELPCPSCRGRG-YTPCVECGIERTRSDCSLCNGKG 112 (388)
Q Consensus 78 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g 112 (388)
-+.+||+| |.= +.-|..|..-...-.||.|.=.|
T Consensus 24 ~~F~CPnC-G~~~I~RC~~CRk~~~~Y~CP~CGF~G 58 (59)
T PRK14890 24 VKFLCPNC-GEVIIYRCEKCRKQSNPYTCPKCGFEG 58 (59)
T ss_pred CEeeCCCC-CCeeEeechhHHhcCCceECCCCCCcC
Confidence 56889999 555 78899999888888898886544
No 105
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=31.80 E-value=24 Score=33.29 Aligned_cols=20 Identities=30% Similarity=0.632 Sum_probs=16.0
Q ss_pred CCceec-cccCCCCCCCcccc
Q 037631 73 NGQYIR-ELPCPSCRGRGYTP 92 (388)
Q Consensus 73 ~~~~~~-~~~~~~~~~~~~~~ 92 (388)
.|..|+ .-||+.|+|.||..
T Consensus 108 ~G~~i~~~~~C~~C~G~G~v~ 128 (186)
T TIGR02642 108 TGLIQRRQRECDTCAGTGRFR 128 (186)
T ss_pred eeEEecCCCCCCCCCCccEEe
Confidence 466776 47999999999974
No 106
>PF05741 zf-nanos: Nanos RNA binding domain; InterPro: IPR024161 Nanos is a highly conserved RNA-binding protein in higher eukaryotes and functions as a key regulatory protein in translational control using a 3' untranslated region during the development and maintenance of germ cells. Nanos comprises a non-conserved amino-terminus and highly conserved carboxy- terminal regions. The C-terminal region has two conserved Cys-Cys-His-Cys (CCHC)-type zinc-finger motifs that are indispensable for nanos function [, , ]. The structure of the nanos-type zinc finger is composed of two independent zinc-finger (ZF) lobes, the N-terminal ZF1 and the C-terminal ZF2, which are connected by a linker helix []. These lobes create a large cleft. Zinc ions in ZF1 and ZF2 are bound to the CCHC motif by tetrahedral coordination.; PDB: 3ALR_B.
Probab=30.43 E-value=23 Score=27.16 Aligned_cols=18 Identities=44% Similarity=1.267 Sum_probs=4.9
Q ss_pred ccceecccCC---CccccCCC
Q 037631 281 FKCRLCGERG---HNRRTCPK 298 (388)
Q Consensus 281 ~~C~~CG~~G---H~ardCp~ 298 (388)
..|-.||..| |..+.||.
T Consensus 34 y~Cp~CgAtGd~AHT~~yCP~ 54 (55)
T PF05741_consen 34 YVCPICGATGDNAHTIKYCPK 54 (55)
T ss_dssp ---TTT---GGG---GGG-TT
T ss_pred CcCCCCcCcCccccccccCcC
Confidence 4666666543 55555554
No 107
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=30.05 E-value=46 Score=33.34 Aligned_cols=37 Identities=27% Similarity=0.630 Sum_probs=22.0
Q ss_pred cceeeecccCceeeccccccCCc-ch---h---hcccCCccccccc
Q 037631 112 GIMTCRQCSGDCVIWEESVDEQP-WE---N---AHSVSPLKVKEDD 150 (388)
Q Consensus 112 g~~~~~~~~~~~~~~~~~~~~~~-~~---~---~~~~spl~ike~~ 150 (388)
|+-+|..|. +||=+..+|..| |. + -|...|++....+
T Consensus 19 ge~VC~~CG--~Vi~~~~id~gpewr~f~e~~~~r~g~P~t~~~~d 62 (285)
T COG1405 19 GEIVCADCG--LVLEDSLIDPGPEWRAFDERHERRVGAPLTPSIHD 62 (285)
T ss_pred CeEEeccCC--EEeccccccCCCCcccccccccccccCCCccccCc
Confidence 444444443 455566665544 65 1 1566898888886
No 108
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=29.01 E-value=32 Score=34.38 Aligned_cols=22 Identities=41% Similarity=0.980 Sum_probs=11.0
Q ss_pred cceeeecccCceeeccccccCCc-c
Q 037631 112 GIMTCRQCSGDCVIWEESVDEQP-W 135 (388)
Q Consensus 112 g~~~~~~~~~~~~~~~~~~~~~~-~ 135 (388)
|.++|..|. .||=|..||+.| |
T Consensus 29 Ge~vC~~CG--~Vl~e~~iD~g~EW 51 (310)
T PRK00423 29 GEIVCADCG--LVIEENIIDQGPEW 51 (310)
T ss_pred CeEeecccC--CcccccccccCCCc
Confidence 444444443 345555666655 6
No 109
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=27.74 E-value=37 Score=38.29 Aligned_cols=31 Identities=35% Similarity=1.047 Sum_probs=0.0
Q ss_pred CCCccc---cccccCCCccccCCCcc-------cCccceeeecc
Q 037631 86 RGRGYT---PCVECGIERTRSDCSLC-------NGKGIMTCRQC 119 (388)
Q Consensus 86 ~~~~~~---~~~~~~~~~~~~~~~~~-------~~~g~~~~~~~ 119 (388)
|-|||- +|..|| ...-||.| ...|.+.|.+|
T Consensus 428 nRRGys~~l~C~~Cg---~v~~Cp~Cd~~lt~H~~~~~L~CH~C 468 (730)
T COG1198 428 NRRGYAPLLLCRDCG---YIAECPNCDSPLTLHKATGQLRCHYC 468 (730)
T ss_pred ccCCccceeecccCC---CcccCCCCCcceEEecCCCeeEeCCC
No 110
>PF12675 DUF3795: Protein of unknown function (DUF3795); InterPro: IPR024227 This family of proteins is functionally uncharacterised and is found in bacteria and archaea. Proteins in this family are typically between 99 and 171 amino acids in length. These proteins are likely to be zinc binding given the conserved cysteines.
Probab=27.16 E-value=44 Score=26.69 Aligned_cols=40 Identities=33% Similarity=0.843 Sum_probs=28.8
Q ss_pred eeccccCCCCCCCcc-ccccccCCCccccCCCcccCccceeeecccC
Q 037631 76 YIRELPCPSCRGRGY-TPCVECGIERTRSDCSLCNGKGIMTCRQCSG 121 (388)
Q Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 121 (388)
...++.|+-||..+- ..+..|.| .+| +..||+-.|.||..
T Consensus 31 ~~~~~~C~GCr~~~~~~~~~~C~i----~~C--~~ekgv~~C~eC~e 71 (78)
T PF12675_consen 31 SPEKIRCPGCRSGGGKCCCKSCKI----RQC--AKEKGVDFCGECPE 71 (78)
T ss_pred cCCCCcCcCCcCCCCCcCCCCCCc----CcH--HhhCCCCeeecCCC
Confidence 456778999999886 45556653 233 45889999999963
No 111
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=24.39 E-value=76 Score=23.23 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=14.3
Q ss_pred CccccccCCCCcCCCCC
Q 037631 351 TCTCRFCGEKGHNIRTC 367 (388)
Q Consensus 351 ~~~Cy~CGe~GH~ardC 367 (388)
...|++|++..|....|
T Consensus 48 ~~fC~~C~~~~H~~~~C 64 (64)
T smart00647 48 FSFCFRCKVPWHSPVSC 64 (64)
T ss_pred CeECCCCCCcCCCCCCC
Confidence 46799999999987766
No 112
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=23.06 E-value=46 Score=21.20 Aligned_cols=18 Identities=33% Similarity=0.962 Sum_probs=10.6
Q ss_pred ccCCCCCC---CccccccccC
Q 037631 80 LPCPSCRG---RGYTPCVECG 97 (388)
Q Consensus 80 ~~~~~~~~---~~~~~~~~~~ 97 (388)
..||.|.- .+.+.|..||
T Consensus 3 ~~Cp~Cg~~~~~~~~fC~~CG 23 (26)
T PF13248_consen 3 MFCPNCGAEIDPDAKFCPNCG 23 (26)
T ss_pred CCCcccCCcCCcccccChhhC
Confidence 45666643 3566666666
No 113
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=23.05 E-value=47 Score=32.47 Aligned_cols=27 Identities=19% Similarity=0.490 Sum_probs=20.2
Q ss_pred CCCCCcccccCCCceeccccCCCCCCCccc
Q 037631 62 STPKPRSWFGPNGQYIRELPCPSCRGRGYT 91 (388)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (388)
....++.| .|-|.-.|||++|-|==|+
T Consensus 34 ~~~~l~p~---~gtY~G~LPCADC~GI~tt 60 (234)
T PRK10523 34 QAAELKPM---QQSWRGVLPCADCEGIETS 60 (234)
T ss_pred cccccCcc---ccEEeEEEECCCCCCceEE
Confidence 44556777 7899999999999764443
No 114
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=23.03 E-value=38 Score=38.48 Aligned_cols=24 Identities=29% Similarity=0.791 Sum_probs=18.5
Q ss_pred CCCccccccCCCCcCCCCCCCCCC
Q 037631 349 SKTCTCRFCGEKGHNIRTCPRRNL 372 (388)
Q Consensus 349 ~~~~~Cy~CGe~GH~ardCP~~~~ 372 (388)
.....|+.||+.||.+.||.....
T Consensus 258 ~~~~~C~~cgq~gh~~~dc~g~~~ 281 (931)
T KOG2044|consen 258 NKPRRCFLCGQTGHEAKDCEGKPR 281 (931)
T ss_pred CCcccchhhcccCCcHhhcCCcCC
Confidence 345668888888888888877655
No 115
>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses.; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process
Probab=22.93 E-value=16 Score=29.15 Aligned_cols=9 Identities=67% Similarity=1.730 Sum_probs=6.0
Q ss_pred ccccCCCCC
Q 037631 78 RELPCPSCR 86 (388)
Q Consensus 78 ~~~~~~~~~ 86 (388)
.-||||+||
T Consensus 14 ~tLPC~~Cr 22 (70)
T PF04805_consen 14 STLPCPECR 22 (70)
T ss_pred hcCCCHHHH
Confidence 457777775
No 116
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=22.74 E-value=55 Score=29.67 Aligned_cols=39 Identities=28% Similarity=0.585 Sum_probs=26.0
Q ss_pred ccCCCceec-cccCCCCCCCccccccccCCCc------cccCCCcccCccc
Q 037631 70 FGPNGQYIR-ELPCPSCRGRGYTPCVECGIER------TRSDCSLCNGKGI 113 (388)
Q Consensus 70 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~ 113 (388)
|--+|.|.. |. -|.|...|.+||-.- .-+.||.|.+...
T Consensus 96 ~~h~g~Y~sGE~-----~g~G~l~C~~Cg~~~~~~~~~~l~~Cp~C~~~~F 141 (146)
T PF07295_consen 96 LEHHGVYHSGEV-----VGPGTLVCENCGHEVELTHPERLPPCPKCGHTEF 141 (146)
T ss_pred HHhcCCeecCcE-----ecCceEecccCCCEEEecCCCcCCCCCCCCCCee
Confidence 444666654 33 388999999999643 3467888877643
No 117
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=21.42 E-value=58 Score=37.14 Aligned_cols=22 Identities=27% Similarity=0.526 Sum_probs=12.7
Q ss_pred cccccccccccccCccccCCCC
Q 037631 250 KGVRFYCKHCGREGHRKFYCPE 271 (388)
Q Consensus 250 ~g~~~~Cf~CG~~GH~ar~CP~ 271 (388)
++....|+.||+.||.+.+|..
T Consensus 257 P~~~~~C~~cgq~gh~~~dc~g 278 (931)
T KOG2044|consen 257 PNKPRRCFLCGQTGHEAKDCEG 278 (931)
T ss_pred CCCcccchhhcccCCcHhhcCC
Confidence 3444556666666666666654
No 118
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=21.31 E-value=49 Score=31.30 Aligned_cols=15 Identities=47% Similarity=1.034 Sum_probs=9.0
Q ss_pred eeeecCCCccccCCC
Q 037631 313 RCQICRQRGHNRRTC 327 (388)
Q Consensus 313 ~C~~CGe~GH~ardC 327 (388)
.|++||+.||+.+.|
T Consensus 102 ~~~r~G~rg~~~r~~ 116 (195)
T KOG0107|consen 102 FCYRCGERGHIGRNC 116 (195)
T ss_pred ccccCCCcccccccc
Confidence 366666666665444
No 119
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=21.31 E-value=86 Score=32.29 Aligned_cols=40 Identities=28% Similarity=0.654 Sum_probs=31.4
Q ss_pred ccccCCCCCCCccccccccCCCccccCCCcccCccceeeecccCcee
Q 037631 78 RELPCPSCRGRGYTPCVECGIERTRSDCSLCNGKGIMTCRQCSGDCV 124 (388)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 124 (388)
+.--|+.|+|+|- ..-+...|+.|.|.|+.+-.+..+-.+
T Consensus 126 ~~~iCs~C~GsGg-------ksg~~~~C~~C~GsGv~~~~~~~gPg~ 165 (337)
T KOG0712|consen 126 RNFICSKCSGSGG-------KSGSAPKCTTCRGSGVQTRTRQMGPGM 165 (337)
T ss_pred cCccCCcCCCCCC-------CCCCCCCCCCCCCCCceeEEEeccccc
Confidence 4456999999984 344555899999999999988888743
No 120
>KOG3116 consensus Predicted C3H1-type Zn-finger protein [General function prediction only]
Probab=20.87 E-value=22 Score=32.67 Aligned_cols=22 Identities=36% Similarity=0.647 Sum_probs=13.5
Q ss_pred cceeeecCCCccccCCCCCCCC
Q 037631 311 HHRCQICRQRGHNRRTCPQVTG 332 (388)
Q Consensus 311 ~~~C~~CGe~GH~ardCP~~~~ 332 (388)
...|.+|-+.||+..+|.+.+.
T Consensus 27 ~~rCQKClq~GHWtYECk~kRk 48 (177)
T KOG3116|consen 27 SARCQKCLQAGHWTYECKNKRK 48 (177)
T ss_pred chhHHHHHhhccceeeecCcee
Confidence 3466666666666666665543
No 121
>KOG2673 consensus Uncharacterized conserved protein, contains PSP domain [Function unknown]
Probab=20.83 E-value=49 Score=35.32 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.0
Q ss_pred cccccccccCccccCCCCCcCC
Q 037631 254 FYCKHCGREGHRKFYCPELKDG 275 (388)
Q Consensus 254 ~~Cf~CG~~GH~ar~CP~~~~~ 275 (388)
..|||||..-|.-++||.+...
T Consensus 129 ~~CFNC~g~~hsLrdC~rp~d~ 150 (485)
T KOG2673|consen 129 DPCFNCGGTPHSLRDCPRPFDF 150 (485)
T ss_pred ccccccCCCCCccccCCCcccc
Confidence 3499999999999999988753
No 122
>PF12353 eIF3g: Eukaryotic translation initiation factor 3 subunit G ; InterPro: IPR024675 At least eleven different protein factors are involved in initiation of protein synthesis in eukaryotes. Binding of initiator tRNA and mRNA to the 40S subunit requires the presence of the translation initiation factors eIF-2 and eIF-3, with eIF-3 being particularly important for 80S ribosome dissociation and mRNA binding []. eIF-3 is the most complex translation inititation factor, consisting of about 13 putative subunits and having a molecular weight of between 550 - 700 kDa in mammalian cells. Subunits are designated eIF-3a - eIF-3m; the large number of subunits means that the interactions between the individual subunits that make up the eIF-3 complex are complex and varied. Subunit G is required for eIF3 integrity. This entry represents a domain of approximately 130 amino acids in length found at the N terminus of eukaryotic translation initiation factor 3 subunit G. This domain is commonly found in association with the RNA recognition domain PF00076 from PFAM.
Probab=20.54 E-value=54 Score=28.96 Aligned_cols=21 Identities=29% Similarity=0.806 Sum_probs=15.1
Q ss_pred CCccccccCCCCcCCCCCCCCC
Q 037631 350 KTCTCRFCGEKGHNIRTCPRRN 371 (388)
Q Consensus 350 ~~~~Cy~CGe~GH~ardCP~~~ 371 (388)
..+.|..|+ -.||...||-..
T Consensus 105 ~~v~CR~Ck-GdH~T~~CPyKd 125 (128)
T PF12353_consen 105 SKVKCRICK-GDHWTSKCPYKD 125 (128)
T ss_pred ceEEeCCCC-CCcccccCCccc
Confidence 346788885 778888888654
No 123
>COG5179 TAF1 Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=20.46 E-value=66 Score=35.89 Aligned_cols=18 Identities=44% Similarity=1.126 Sum_probs=8.7
Q ss_pred ccceecccCCCcc--ccCCC
Q 037631 281 FKCRLCGERGHNR--RTCPK 298 (388)
Q Consensus 281 ~~C~~CG~~GH~a--rdCp~ 298 (388)
..|.+||+.||+. +.||.
T Consensus 938 r~C~nCGQvGHmkTNK~CP~ 957 (968)
T COG5179 938 RTCGNCGQVGHMKTNKACPK 957 (968)
T ss_pred eecccccccccccccccCcc
Confidence 3455555555542 33554
Done!