BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037633
(138 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q65WT0|BD31B_ORYSJ Protein BUD31 homolog 2 OS=Oryza sativa subsp. japonica
GN=Os05g0446300 PE=2 SV=1
Length = 145
Score = 189 bits (480), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 100/147 (68%), Positives = 113/147 (76%), Gaps = 16/147 (10%)
Query: 1 MPKVKTNTVQYPPEGCWDLIEPTLRKFQAKMTEAENDPHDGKRK--------------SA 46
MPK+KT+ V+YP EG W+LIEPTLR +AKM EAENDPHDGKRK S
Sbjct: 1 MPKIKTSRVKYP-EG-WELIEPTLRDLEAKMREAENDPHDGKRKCEALWPIFRISHQKSR 58
Query: 47 IFFYLYHRKKEISMELYDFCLDHGHADRNLIAKCKKPGYESLCCLRCMQPRDHNFQSTCV 106
+ LY+R+KEIS ELY+FCLD GHAD+NLIAK KKPGYE LCCLRC+Q RDHNF +TCV
Sbjct: 59 YIYDLYYRRKEISKELYEFCLDQGHADKNLIAKWKKPGYERLCCLRCIQTRDHNFATTCV 118
Query: 107 CRVPKNLREEKVIEFVHCCWRGRASGD 133
CRVPK+LREEKVIE VHC RG ASGD
Sbjct: 119 CRVPKHLREEKVIECVHCGCRGCASGD 145
>sp|Q94DE2|BD31A_ORYSJ Protein BUD31 homolog 1 OS=Oryza sativa subsp. japonica
GN=Os01g0857700 PE=2 SV=1
Length = 145
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 97/147 (65%), Positives = 111/147 (75%), Gaps = 16/147 (10%)
Query: 1 MPKVKTNTVQYPPEGCWDLIEPTLRKFQAKMTEAENDPHDGKRK--------------SA 46
MPK+KT+ V+YP G W+LIEPT+R+ AKM EAEND HDGKRK S
Sbjct: 1 MPKIKTSRVKYP--GGWELIEPTIRELDAKMREAENDTHDGKRKCEALWPIFRISHQRSR 58
Query: 47 IFFYLYHRKKEISMELYDFCLDHGHADRNLIAKCKKPGYESLCCLRCMQPRDHNFQSTCV 106
+ LY+R+KEIS ELY+FCLD G+ADRNLIAK KKPGYE LCCLRC+Q RDHNF +TCV
Sbjct: 59 YIYDLYYRRKEISKELYEFCLDQGYADRNLIAKWKKPGYERLCCLRCIQTRDHNFATTCV 118
Query: 107 CRVPKNLREEKVIEFVHCCWRGRASGD 133
CRVPK+LREEKVIE VHC RG ASGD
Sbjct: 119 CRVPKHLREEKVIECVHCGCRGCASGD 145
>sp|P35682|BD31C_ORYSJ Protein BUD31 homolog 3 OS=Oryza sativa subsp. japonica
GN=Os12g0149800 PE=2 SV=2
Length = 145
Score = 178 bits (452), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 92/147 (62%), Positives = 108/147 (73%), Gaps = 16/147 (10%)
Query: 1 MPKVKTNTVQYPPEGCWDLIEPTLRKFQAKMTEAENDPHDGKRK--------------SA 46
MPK+KT+ V+YP W+LIEPTL + +KM EAENDPHDG+RK S
Sbjct: 1 MPKIKTSGVKYPDG--WELIEPTLSELHSKMREAENDPHDGRRKCEALWPIFKINHQRSR 58
Query: 47 IFFYLYHRKKEISMELYDFCLDHGHADRNLIAKCKKPGYESLCCLRCMQPRDHNFQSTCV 106
+ LY+ +KEIS ELY+FCLD GHADRNLIAK KK GYE LCCLRC+Q RDHNF +TCV
Sbjct: 59 YLYDLYYNRKEISQELYEFCLDQGHADRNLIAKWKKQGYERLCCLRCIQTRDHNFATTCV 118
Query: 107 CRVPKNLREEKVIEFVHCCWRGRASGD 133
CRVPK+LREE+VIE VHC +G ASGD
Sbjct: 119 CRVPKHLREEQVIECVHCGCKGCASGD 145
>sp|Q962X9|BUD31_BRABE Protein BUD31 homolog OS=Branchiostoma belcheri PE=2 SV=1
Length = 144
Score = 139 bits (349), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 76/143 (53%), Positives = 97/143 (67%), Gaps = 17/143 (11%)
Query: 1 MPKVKTNTVQYPPEGCWDLIEPTLRKFQAKMTEAENDPHDGKRK--------------SA 46
MPKV+ + + PPEG W+LIEPTL + KM EAE +PH+GKRK S
Sbjct: 1 MPKVR-RSRKPPPEG-WELIEPTLDELDQKMREAETEPHEGKRKVEALWPIFKIHHQKSR 58
Query: 47 IFFYLYHRKKEISMELYDFCLDHGHADRNLIAKCKKPGYESLCCLRCMQPRDHNFQSTCV 106
F L++R+K IS ELY++CL G AD+NLIAK KK GYE+LCCLRC+Q RD NF + C+
Sbjct: 59 YIFDLFYRRKAISRELYEYCLKEGIADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCI 118
Query: 107 CRVPKN-LREEKVIEFVHCCWRG 128
CRVPK+ L E +++E VHC RG
Sbjct: 119 CRVPKSKLEEGRIVECVHCGCRG 141
>sp|P12805|BUD31_XENLA Protein BUD31 homolog OS=Xenopus laevis GN=bud31 PE=2 SV=1
Length = 144
Score = 136 bits (342), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 95/143 (66%), Gaps = 17/143 (11%)
Query: 1 MPKVKTNTVQYPPEGCWDLIEPTLRKFQAKMTEAENDPHDGKRK--------------SA 46
MPKVK + + PP+G W+LIEPTL + KM EAE DPH+GKRK +
Sbjct: 1 MPKVK-RSRKPPPDG-WELIEPTLDELDQKMREAETDPHEGKRKVESLWPIFRIHHQKTR 58
Query: 47 IFFYLYHRKKEISMELYDFCLDHGHADRNLIAKCKKPGYESLCCLRCMQPRDHNFQSTCV 106
F L++++K IS ELYD+C+ G+AD+NLIAK KK GYE+LCCLRC+Q RD NF + C+
Sbjct: 59 YIFDLFYKRKAISRELYDYCIREGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCI 118
Query: 107 CRVPKN-LREEKVIEFVHCCWRG 128
CRVPK L ++IE HC RG
Sbjct: 119 CRVPKTKLEVGRIIECTHCGCRG 141
>sp|O70454|BUD31_RAT Protein BUD31 homolog OS=Rattus norvegicus GN=Bud31 PE=2 SV=2
Length = 144
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/143 (50%), Positives = 96/143 (67%), Gaps = 17/143 (11%)
Query: 1 MPKVKTNTVQYPPEGCWDLIEPTLRKFQAKMTEAENDPHDGKRK--------------SA 46
MPKVK + + PP+G W+LIEPTL + KM EAE +PH+GKRK +
Sbjct: 1 MPKVK-RSRKAPPDG-WELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTR 58
Query: 47 IFFYLYHRKKEISMELYDFCLDHGHADRNLIAKCKKPGYESLCCLRCMQPRDHNFQSTCV 106
F L++++K IS ELY++C+ G+AD+NLIAK KK GYE+LCCLRC+Q RD NF + C+
Sbjct: 59 YIFDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCI 118
Query: 107 CRVPKN-LREEKVIEFVHCCWRG 128
CRVPK+ L ++IE HC RG
Sbjct: 119 CRVPKSKLEVGRIIECTHCGCRG 141
>sp|P41223|BUD31_HUMAN Protein BUD31 homolog OS=Homo sapiens GN=BUD31 PE=1 SV=2
Length = 144
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/143 (50%), Positives = 96/143 (67%), Gaps = 17/143 (11%)
Query: 1 MPKVKTNTVQYPPEGCWDLIEPTLRKFQAKMTEAENDPHDGKRK--------------SA 46
MPKVK + + PP+G W+LIEPTL + KM EAE +PH+GKRK +
Sbjct: 1 MPKVK-RSRKAPPDG-WELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTR 58
Query: 47 IFFYLYHRKKEISMELYDFCLDHGHADRNLIAKCKKPGYESLCCLRCMQPRDHNFQSTCV 106
F L++++K IS ELY++C+ G+AD+NLIAK KK GYE+LCCLRC+Q RD NF + C+
Sbjct: 59 YIFDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCI 118
Query: 107 CRVPKN-LREEKVIEFVHCCWRG 128
CRVPK+ L ++IE HC RG
Sbjct: 119 CRVPKSKLEVGRIIECTHCGCRG 141
>sp|Q2NKU3|BUD31_BOVIN Protein BUD31 homolog OS=Bos taurus GN=BUD31 PE=2 SV=1
Length = 144
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/143 (50%), Positives = 96/143 (67%), Gaps = 17/143 (11%)
Query: 1 MPKVKTNTVQYPPEGCWDLIEPTLRKFQAKMTEAENDPHDGKRK--------------SA 46
MPKVK + + PP+G W+LIEPTL + KM EAE +PH+GKRK +
Sbjct: 1 MPKVK-RSRKAPPDG-WELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTR 58
Query: 47 IFFYLYHRKKEISMELYDFCLDHGHADRNLIAKCKKPGYESLCCLRCMQPRDHNFQSTCV 106
F L++++K IS ELY++C+ G+AD+NLIAK KK GYE+LCCLRC+Q RD NF + C+
Sbjct: 59 YIFDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCI 118
Query: 107 CRVPKN-LREEKVIEFVHCCWRG 128
CRVPK+ L ++IE HC RG
Sbjct: 119 CRVPKSKLEVGRIIECTHCGCRG 141
>sp|P34313|BUD31_CAEEL Protein BUD31 homolog OS=Caenorhabditis elegans GN=C07A9.2 PE=2
SV=1
Length = 147
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/128 (54%), Positives = 88/128 (68%), Gaps = 16/128 (12%)
Query: 12 PPEGCWDLIEPTLRKFQAKMTEAENDPHDGKRKSAI--------------FFYLYHRKKE 57
PPEG WDLIEPTL +F+AKM EAE +PH+GKRK+ I + +Y++K E
Sbjct: 14 PPEG-WDLIEPTLEQFEAKMREAETEPHEGKRKTEINWPIFRIHHQRSRYVYDMYYKKAE 72
Query: 58 ISMELYDFCLDHGHADRNLIAKCKKPGYESLCCLRCMQPRDHNFQSTCVCRVPKN-LREE 116
IS ELY+FCL AD LIAK KK GYE+LCC++C+ RD NF + C+CRVPK+ L E
Sbjct: 73 ISRELYEFCLTAKFADAALIAKWKKQGYENLCCVKCVNTRDSNFGTACICRVPKSKLDAE 132
Query: 117 KVIEFVHC 124
+VIE VHC
Sbjct: 133 RVIECVHC 140
>sp|Q567Z7|BUD31_DANRE Protein BUD31 homolog OS=Danio rerio GN=bud31 PE=2 SV=1
Length = 144
Score = 132 bits (331), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 72/143 (50%), Positives = 94/143 (65%), Gaps = 17/143 (11%)
Query: 1 MPKVKTNTVQYPPEGCWDLIEPTLRKFQAKMTEAENDPHDGKRK--------------SA 46
MPKVK + + PP+G W+L+EPTL + KM EAE +PH+GKRK S
Sbjct: 1 MPKVK-RSRKPPPDG-WELVEPTLDELDQKMREAETEPHEGKRKVESLWPIFRLHHQRSR 58
Query: 47 IFFYLYHRKKEISMELYDFCLDHGHADRNLIAKCKKPGYESLCCLRCMQPRDHNFQSTCV 106
F L++++K IS ELY +C+ G+AD+NLIAK KK GYE+LCCLRC+Q RD NF + C+
Sbjct: 59 YIFDLFYKRKAISRELYKYCIRGGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCI 118
Query: 107 CRVPKN-LREEKVIEFVHCCWRG 128
CRVPK L ++IE HC RG
Sbjct: 119 CRVPKGKLEVGRIIECTHCGCRG 141
>sp|O74772|CWF14_SCHPO Pre-mRNA-splicing factor cwf14 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cwf14 PE=1 SV=1
Length = 146
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 91/147 (61%), Gaps = 15/147 (10%)
Query: 1 MPKVKTNTVQYPPEGCWDLIEPTLRKFQAKMTEAENDPHDGKR-------------KSAI 47
MP+++T+ + PP+G +D IEPTL +FQ +M + EN G + +S
Sbjct: 1 MPRLRTSRTKRPPDG-FDEIEPTLIEFQDRMRQIENTMGKGTKTEMLAPIFQLHHQRSRY 59
Query: 48 FFYLYHRKKEISMELYDFCLDHGHADRNLIAKCKKPGYESLCCLRCMQPRDHNFQSTCVC 107
+ LY++++ IS ELY++ L +AD NLIAK KKPGYE LCCLRC+Q + F STC+C
Sbjct: 60 IYDLYYKREAISTELYNWLLKQNYADGNLIAKWKKPGYEKLCCLRCIQTAESKFGSTCIC 119
Query: 108 RVPKN-LREEKVIEFVHCCWRGRASGD 133
RVPK+ L +++ + HC G AS D
Sbjct: 120 RVPKSKLDKDQRVRCTHCGCNGCASCD 146
>sp|Q6PGH1|BUD31_MOUSE Protein BUD31 homolog OS=Mus musculus GN=Bud31 PE=2 SV=1
Length = 103
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 76/129 (58%), Gaps = 30/129 (23%)
Query: 1 MPKVKTNTVQYPPEGCWDLIEPTLRKFQAKMTEAENDPHDGKRKSAIFFYLYHRKKEISM 60
MPKVK + + PP+G W+LIEPTL + KM E
Sbjct: 1 MPKVK-RSRKAPPDG-WELIEPTLDELDQKMRE--------------------------- 31
Query: 61 ELYDFCLDHGHADRNLIAKCKKPGYESLCCLRCMQPRDHNFQSTCVCRVPKN-LREEKVI 119
ELY++C+ G+AD+NLIAK KK GYE+LCCLRC+Q RD NF + C+CRVPK+ L ++I
Sbjct: 32 ELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICRVPKSKLEVGRII 91
Query: 120 EFVHCCWRG 128
E HC RG
Sbjct: 92 ECTHCGCRG 100
>sp|P25337|BUD31_YEAST Pre-mRNA-splicing factor BUD31 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BUD31 PE=1 SV=1
Length = 157
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 88/158 (55%), Gaps = 26/158 (16%)
Query: 1 MPKVKTNTVQYPPEGCWDLIEPTLRKFQAKMTEAENDPHDG----------------KRK 44
MP++KT + P+G ++ I+PTL F+ ++ +A+ D ++
Sbjct: 1 MPRIKTRRSKPAPDG-FEKIKPTLTDFEIQLRDAQKDKSSKLAAKSNEQLWEIMQLHHQR 59
Query: 45 SAIFFYLYHRKKEISMELYDFCLDHGHADRNLIAKCKKPGYESLCCLRCMQPRDHNFQST 104
S + LY+++K IS +LYD+ + +AD+ LIAK +K GYE LCCLRC+Q + N ST
Sbjct: 60 SRYIYTLYYKRKAISKDLYDWLIKEKYADKLLIAKWRKTGYEKLCCLRCIQKNETNNGST 119
Query: 105 CVCRVPKNLREEKV------IEF---VHCCWRGRASGD 133
C+CRVP+ EE+ + F VHC RG AS D
Sbjct: 120 CICRVPRAQLEEEARKKGTQVSFHQCVHCGCRGCASTD 157
>sp|Q01667|CAB6_ARATH Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis
thaliana GN=LHCA1 PE=1 SV=1
Length = 241
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 23/59 (38%)
Query: 68 DHGHADRNLIAKCKKPGYESLCCLRCMQPRDHNFQSTCVCRVPKNLREEKVIEFVHCCW 126
+ G+ R +A PG L P D F + VP NL K E +HC W
Sbjct: 35 NAGNVGRIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRW 93
>sp|P12360|CB11_SOLLC Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum
lycopersicum GN=CAB6A PE=2 SV=1
Length = 246
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 18/44 (40%)
Query: 83 PGYESLCCLRCMQPRDHNFQSTCVCRVPKNLREEKVIEFVHCCW 126
PG L P D F S + VP NL K E +HC W
Sbjct: 51 PGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRW 94
>sp|O94383|SMC1_SCHPO Structural maintenance of chromosomes protein 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=psm1 PE=1 SV=2
Length = 1228
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 24 LRKFQAKMTEAENDPHDGKRKSAIFFYLYHRKKEISMELYDFCLD---HGHADRN 75
L K K+ E + HD ++K + L+H+ +E++ EL CL ADRN
Sbjct: 447 LAKINEKIESLELEKHDQQKKRLTYSELFHKTQELNEELQS-CLQKILEASADRN 500
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.462
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,762,856
Number of Sequences: 539616
Number of extensions: 2020005
Number of successful extensions: 4852
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4814
Number of HSP's gapped (non-prelim): 24
length of query: 138
length of database: 191,569,459
effective HSP length: 103
effective length of query: 35
effective length of database: 135,989,011
effective search space: 4759615385
effective search space used: 4759615385
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)