Query 037633
Match_columns 138
No_of_seqs 104 out of 160
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 02:56:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037633.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037633hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3404 G10 protein/predicted 100.0 1.6E-78 3.4E-83 465.5 8.4 130 1-132 1-145 (145)
2 PF01125 G10: G10 protein; In 100.0 5.7E-77 1.2E-81 460.7 7.2 130 1-131 1-145 (145)
3 COG5132 BUD31 Cell cycle contr 100.0 4.9E-65 1.1E-69 390.2 6.5 132 1-133 1-146 (146)
4 PF04376 ATE_N: Arginine-tRNA- 73.5 2.8 6.1E-05 29.2 2.1 30 55-94 28-60 (80)
5 PF14553 YqbF: YqbF, hypotheti 67.3 3 6.4E-05 27.0 1.0 19 54-72 17-35 (43)
6 PRK12726 flagellar biosynthesi 59.2 13 0.00028 33.8 3.9 46 17-80 119-164 (407)
7 PF08513 LisH: LisH; InterPro 57.8 8.1 0.00018 21.9 1.6 19 57-75 2-20 (27)
8 PRK01305 arginyl-tRNA-protein 51.2 11 0.00024 31.5 2.1 26 55-89 35-63 (240)
9 cd08307 Death_Pelle Death doma 49.3 8.5 0.00018 28.2 0.9 65 12-77 20-85 (97)
10 smart00667 LisH Lissencephaly 48.7 14 0.0003 20.0 1.6 21 55-75 3-23 (34)
11 PF14077 WD40_alt: Alternative 46.8 11 0.00024 25.0 1.1 12 56-67 31-42 (48)
12 PRK11798 ClpXP protease specif 42.2 16 0.00034 28.8 1.5 17 57-73 10-26 (138)
13 PF06677 Auto_anti-p27: Sjogre 41.6 10 0.00022 23.9 0.3 23 102-125 17-41 (41)
14 cd08796 Death_IRAK-M Death dom 36.8 12 0.00025 27.2 0.1 62 12-74 23-84 (89)
15 KOG2752 Uncharacterized conser 35.6 24 0.00052 31.6 1.8 60 71-130 79-164 (345)
16 COG2969 SspB Stringent starvat 35.5 23 0.00049 28.5 1.5 15 57-71 11-25 (155)
17 PRK00420 hypothetical protein; 33.2 19 0.0004 27.3 0.6 22 103-125 24-47 (112)
18 KOG0487 Transcription factor A 32.5 14 0.00031 32.3 -0.1 16 47-62 254-272 (308)
19 PF03604 DNA_RNApol_7kD: DNA d 32.1 16 0.00036 21.9 0.1 16 112-127 11-26 (32)
20 COG0694 Thioredoxin-like prote 29.6 20 0.00043 26.3 0.2 11 124-134 51-61 (93)
21 PF08343 RNR_N: Ribonucleotide 28.6 55 0.0012 23.3 2.4 55 12-81 12-66 (82)
22 cd08793 Death_IRAK4 Death doma 27.1 17 0.00036 27.2 -0.5 59 12-74 20-88 (100)
23 COG3433 Aryl carrier domain [S 26.3 23 0.00049 25.4 0.1 12 75-86 36-47 (74)
24 PTZ00087 thrombosponding-relat 26.0 21 0.00046 31.6 -0.2 19 47-65 314-332 (340)
25 PF08946 Osmo_CC: Osmosensory 25.2 75 0.0016 21.0 2.3 21 14-35 12-32 (46)
26 PF08574 DUF1762: Protein of u 22.1 39 0.00083 23.4 0.6 9 47-55 6-14 (77)
27 COG3529 Predicted nucleic-acid 21.1 31 0.00067 24.2 -0.1 11 118-128 32-42 (66)
28 PF10737 GerPC: Spore germinat 21.1 1.1E+02 0.0024 24.8 3.1 35 19-53 3-37 (176)
29 PF00583 Acetyltransf_1: Acety 20.8 65 0.0014 20.0 1.4 23 46-68 26-52 (83)
No 1
>KOG3404 consensus G10 protein/predicted nuclear transcription regulator [Transcription]
Probab=100.00 E-value=1.6e-78 Score=465.52 Aligned_cols=130 Identities=59% Similarity=1.110 Sum_probs=128.3
Q ss_pred CCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhCCCCCCCCcce--------------eeeecchhhhhhhHHHHHHH
Q 037633 1 MPKVKTNTVQYPPEGCWDLIEPTLRKFQAKMTEAENDPHDGKRKSA--------------IFFYLYHRKKEISMELYDFC 66 (138)
Q Consensus 1 MPkir~~~k~~pP~G~~e~IeptL~e~~~kmreae~e~~~gkrk~e--------------YIydlyyk~k~ISkeLY~~~ 66 (138)
||||+++||+ ||+| ||+|||||++|+++|||||+++|+|+|++| |||||||||++||+|||+||
T Consensus 1 mpkv~~~rk~-~Pdg-~e~IeptL~e~e~kmReae~~~~~~~~~~E~lwpIfqlhHQrsRYiYdlyykR~~IS~eLY~~~ 78 (145)
T KOG3404|consen 1 MPKVKRSRKP-PPDG-WELIEPTLEEFEAKMREAETEPHEGKRKTESLWPIFQLHHQRSRYIYDLYYKRKAISRELYDYC 78 (145)
T ss_pred CCccCcCCCC-CCcc-hhhhhhhHHHHHHHHHHhhcCcccCCCcchhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999988 9999 999999999999999999999999999988 99999999999999999999
Q ss_pred HhccccCHHHHhhcCCCcccccccccccccCCCCCCcceEeeccc-cccccceeeeeecccccccCC
Q 037633 67 LDHGHADRNLIAKCKKPGYESLCCLRCMQPRDHNFQSTCVCRVPK-NLREEKVIEFVHCCWRGRASG 132 (138)
Q Consensus 67 lk~~yaD~~LIaKWKK~GYE~LCCl~CIq~~~~n~gttCICRVPk-~l~~~~~~eCv~CGC~GCaS~ 132 (138)
|+++|||++|||||||+|||+|||||||||+|+|||||||||||+ +|+++++++||||||+||||+
T Consensus 79 l~~~yaD~~LiakWkk~GYE~LCClRCIq~~dsn~Gt~CICRVPk~~ld~~~~~~C~hCGCrGCs~~ 145 (145)
T KOG3404|consen 79 LKEKYADKNLIAKWKKQGYENLCCLRCIQTRDSNFGTTCICRVPKSKLDVERIVECVHCGCRGCSGY 145 (145)
T ss_pred HHcccchHHHHHHHhhcCccceeeeeeccccccCCCceEEEeCChhhcChhheeeeeccCcCCCCCC
Confidence 999999999999999999999999999999999999999999999 999999999999999999985
No 2
>PF01125 G10: G10 protein; InterPro: IPR001748 A Xenopus protein known as G10 [] has been found to be highly conserved in a wide range of eukaryotic species. The function of G10 is still unknown. G10 is a protein of about 17 to 18 kDa (143 to 157 residues) which is hydrophilic and whose C-terminal half is rich in cysteines and could be involved in metal-binding.; GO: 0005634 nucleus
Probab=100.00 E-value=5.7e-77 Score=460.66 Aligned_cols=130 Identities=59% Similarity=1.061 Sum_probs=126.2
Q ss_pred CCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhCCCCCCCCcce--------------eeeecchhhhhhhHHHHHHH
Q 037633 1 MPKVKTNTVQYPPEGCWDLIEPTLRKFQAKMTEAENDPHDGKRKSA--------------IFFYLYHRKKEISMELYDFC 66 (138)
Q Consensus 1 MPkir~~~k~~pP~G~~e~IeptL~e~~~kmreae~e~~~gkrk~e--------------YIydlyyk~k~ISkeLY~~~ 66 (138)
||+||+++++.||+| ||+|||||+||++|||||+|++|+||+++| |||||||++|+|||||||||
T Consensus 1 MPkir~~~~k~pP~G-~~~Ie~tL~e~~~kmr~ae~~~~~~k~k~e~lWpI~rI~hqrSRYIydlyYk~k~ISkeLY~~l 79 (145)
T PF01125_consen 1 MPKIRTSRKKPPPEG-FEKIEPTLEEFEQKMREAENEPHEGKRKNESLWPIFRIHHQRSRYIYDLYYKRKAISKELYDWL 79 (145)
T ss_pred CCCcccCCCCCCCCc-hHHHHHHHHHHHHHHHHHhhCCCcCCCCCccccceeeecchhhhHHHHHHHHhhhccHHHHHHH
Confidence 999998763339999 999999999999999999999999999888 99999999999999999999
Q ss_pred HhccccCHHHHhhcCCCcccccccccccccCCCCCCcceEeeccc-cccccceeeeeecccccccC
Q 037633 67 LDHGHADRNLIAKCKKPGYESLCCLRCMQPRDHNFQSTCVCRVPK-NLREEKVIEFVHCCWRGRAS 131 (138)
Q Consensus 67 lk~~yaD~~LIaKWKK~GYE~LCCl~CIq~~~~n~gttCICRVPk-~l~~~~~~eCv~CGC~GCaS 131 (138)
|+++|||++|||||||+|||+||||+|||++|+|||+|||||||+ +|+++.+++||||||+||||
T Consensus 80 l~~~yaD~~LIaKWKk~GYE~LCCl~Ciq~~~~n~g~tCICRVP~~~l~~~~~~~c~~CGC~GCaS 145 (145)
T PF01125_consen 80 LKEKYADANLIAKWKKPGYEKLCCLRCIQTRDTNFGTTCICRVPKAKLEEKQFVECVHCGCRGCAS 145 (145)
T ss_pred HHcCCcCHHHHHHhccccHHHHHHHHHhccccccCCCceEEeCcHHHhccCcccccCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999 99999999999999999998
No 3
>COG5132 BUD31 Cell cycle control protein, G10 family [Transcription / Cell division and chromosome partitioning]
Probab=100.00 E-value=4.9e-65 Score=390.15 Aligned_cols=132 Identities=45% Similarity=0.811 Sum_probs=124.6
Q ss_pred CCCCCCCCCCCCCCCCccchHHHHHHHHHHHHHhhCCCCCCCC-------------cceeeeecchhhhhhhHHHHHHHH
Q 037633 1 MPKVKTNTVQYPPEGCWDLIEPTLRKFQAKMTEAENDPHDGKR-------------KSAIFFYLYHRKKEISMELYDFCL 67 (138)
Q Consensus 1 MPkir~~~k~~pP~G~~e~IeptL~e~~~kmreae~e~~~gkr-------------k~eYIydlyyk~k~ISkeLY~~~l 67 (138)
||+|+++|.++||+| ||+|+|||++|+.+||+|||.+..+.+ +++|||+|||||++||.+||+||+
T Consensus 1 MPRi~t~rskp~Pdg-Feki~ptL~~fe~~mRqaen~~~~~sk~E~lwpIfQLHHQRSRYIY~LyyKR~aISt~LY~wL~ 79 (146)
T COG5132 1 MPRIPTNRSKPAPDG-FEKIRPTLEKFEAEMRQAENAPLAPSKPENLWPIFQLHHQRSRYIYNLYYKRGAISTKLYGWLS 79 (146)
T ss_pred CCcCccCCCCCCCcc-hhhhcchHHHHHHHHHHHhcCCCCCCChHHhhHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999995538999 999999999999999999999876533 344999999999999999999999
Q ss_pred hccccCHHHHhhcCCCcccccccccccccCCCCCCcceEeeccc-cccccceeeeeecccccccCCC
Q 037633 68 DHGHADRNLIAKCKKPGYESLCCLRCMQPRDHNFQSTCVCRVPK-NLREEKVIEFVHCCWRGRASGD 133 (138)
Q Consensus 68 k~~yaD~~LIaKWKK~GYE~LCCl~CIq~~~~n~gttCICRVPk-~l~~~~~~eCv~CGC~GCaS~D 133 (138)
+++|||.+|||||+|.|||+||||||||+.+++||+|||||||+ +|++.+.+.|+||||+||||.|
T Consensus 80 k~~yaD~~LiakW~k~GYEkLCCLRCIQ~~esk~GstCICRVP~~~ld~~qr~kC~hCGCrGCas~d 146 (146)
T COG5132 80 KNRYADHELIAKWDKVGYEKLCCLRCIQPIESKHGSTCICRVPQRNLDVSQRLKCDHCGCRGCASYD 146 (146)
T ss_pred HhcccchhHhhhhcccchhhhhhHhhcCcccccCCCEEEEeCchhhcCHHHhccccccCCCcccCCC
Confidence 99999999999999999999999999999999999999999999 9999999999999999999987
No 4
>PF04376 ATE_N: Arginine-tRNA-protein transferase, N terminus; InterPro: IPR007471 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the N-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=73.48 E-value=2.8 Score=29.22 Aligned_cols=30 Identities=33% Similarity=0.686 Sum_probs=25.7
Q ss_pred hhhhhHHHHHHHHhccccCHHHHhhcCCCc---cccccccccc
Q 037633 55 KKEISMELYDFCLDHGHADRNLIAKCKKPG---YESLCCLRCM 94 (138)
Q Consensus 55 ~k~ISkeLY~~~lk~~yaD~~LIaKWKK~G---YE~LCCl~CI 94 (138)
-..++.++|+.|++.| |++.| |..-| ..|-
T Consensus 28 ~~~~~~~~y~~Ll~~G---------~RRsG~~~YrP~c-~~C~ 60 (80)
T PF04376_consen 28 SESLSPEDYQQLLDRG---------FRRSGNYFYRPNC-QSCC 60 (80)
T ss_pred cccCCHHHHHHHHHhC---------CcccCCEEecCCC-CCCc
Confidence 4569999999999999 99999 88877 6665
No 5
>PF14553 YqbF: YqbF, hypothetical protein domain; PDB: 2HJQ_A.
Probab=67.31 E-value=3 Score=26.99 Aligned_cols=19 Identities=16% Similarity=0.462 Sum_probs=14.6
Q ss_pred hhhhhhHHHHHHHHhcccc
Q 037633 54 RKKEISMELYDFCLDHGHA 72 (138)
Q Consensus 54 k~k~ISkeLY~~~lk~~ya 72 (138)
....||+++|+||.++++-
T Consensus 17 ~ee~V~kk~y~YL~~ne~F 35 (43)
T PF14553_consen 17 QEEKVSKKIYNYLNDNEFF 35 (43)
T ss_dssp -EEEE-HHHHHHHHHSTTE
T ss_pred CeeehhHHHHHHHhcCCcE
Confidence 3567999999999998864
No 6
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=59.22 E-value=13 Score=33.81 Aligned_cols=46 Identities=11% Similarity=0.245 Sum_probs=33.7
Q ss_pred ccchHHHHHHHHHHHHHhhCCCCCCCCcceeeeecchhhhhhhHHHHHHHHhccccCHHHHhhc
Q 037633 17 WDLIEPTLRKFQAKMTEAENDPHDGKRKSAIFFYLYHRKKEISMELYDFCLDHGHADRNLIAKC 80 (138)
Q Consensus 17 ~e~IeptL~e~~~kmreae~e~~~gkrk~eYIydlyyk~k~ISkeLY~~~lk~~yaD~~LIaKW 80 (138)
++.|..-|+.++.+|+. +| +..|+=++|+|+||+++| +|..++..+
T Consensus 119 ~~~~~~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~~L~~~g-V~~~~~~~l 164 (407)
T PRK12726 119 LSAMRLELAALNRELAV----------------KM-REEREQNSDFVKFLKGRG-ISDTYVADF 164 (407)
T ss_pred HHHHHHHHHHHHHHHHH----------------Hh-hhhhcccHHHHHHHHHcC-CCHHHHHHH
Confidence 77778888888888883 34 445544569999999999 676666655
No 7
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=57.79 E-value=8.1 Score=21.92 Aligned_cols=19 Identities=21% Similarity=0.602 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHhccccCHH
Q 037633 57 EISMELYDFCLDHGHADRN 75 (138)
Q Consensus 57 ~ISkeLY~~~lk~~yaD~~ 75 (138)
.|..=+|+||+++||.+..
T Consensus 2 ~Ln~lI~~YL~~~Gy~~tA 20 (27)
T PF08513_consen 2 ELNQLIYDYLVENGYKETA 20 (27)
T ss_dssp HHHHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHHHHCCcHHHH
Confidence 4666789999999998764
No 8
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=51.25 E-value=11 Score=31.53 Aligned_cols=26 Identities=38% Similarity=0.767 Sum_probs=23.2
Q ss_pred hhhhhHHHHHHHHhccccCHHHHhhcCCCc---ccccc
Q 037633 55 KKEISMELYDFCLDHGHADRNLIAKCKKPG---YESLC 89 (138)
Q Consensus 55 ~k~ISkeLY~~~lk~~yaD~~LIaKWKK~G---YE~LC 89 (138)
...++.++|+.|+..| |++.| |+.-|
T Consensus 35 ~~~~~~~~y~~L~~~G---------fRRsG~~~YrP~C 63 (240)
T PRK01305 35 SHPIAAELYDELLQAG---------FRRSGNIAYRPHC 63 (240)
T ss_pred cccCCHHHHHHHHHcC---------cCcCCCeeecCCC
Confidence 4578999999999999 99999 88886
No 9
>cd08307 Death_Pelle Death domain of the protein kinase Pelle. Death domain (DD) of the protein kinase Pelle from Drosophila melanogaster and simlar proteins. In Drosophila, interaction between the DDs of Tube and Pelle is an important component of the Toll pathway, which functions in establishing dorsoventral polarity in embryos and in mediating innate immune responses to pathogens. Tube and Pelle transmit the signal from the Toll receptor to the Dorsal/Cactus complex. Pelle also functions in photoreceptor axon targeting. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=49.32 E-value=8.5 Score=28.22 Aligned_cols=65 Identities=9% Similarity=0.151 Sum_probs=44.5
Q ss_pred CCCCCccchHHHHHHH-HHHHHHhhCCCCCCCCcceeeeecchhhhhhhHHHHHHHHhccccCHHHH
Q 037633 12 PPEGCWDLIEPTLRKF-QAKMTEAENDPHDGKRKSAIFFYLYHRKKEISMELYDFCLDHGHADRNLI 77 (138)
Q Consensus 12 pP~G~~e~IeptL~e~-~~kmreae~e~~~gkrk~eYIydlyyk~k~ISkeLY~~~lk~~yaD~~LI 77 (138)
|.+| |..+...+-.+ ..+++..+.....|+..++-+-...=.+.-.=.|||+.+.+.|+.-+.-|
T Consensus 20 ~~~~-W~~LA~~i~~ys~~~v~~i~~~~~~g~SPt~eLL~~WG~~n~Tv~~L~~~L~k~kl~~Am~i 85 (97)
T cd08307 20 TDNV-WEELAFVMMGYSNDDVEGIQRCCLRGRSPTEELLDIWGNKNHTITELFVLLYREKLFRAMRI 85 (97)
T ss_pred CcCc-HHHHHHHHhcCCHHHHHHHHHHHcCCCChHHHHHHHHhhcCCCHHHHHHHHHHhchHHHHHH
Confidence 4578 99999998756 67888888775677777773222222223344589999999997766543
No 10
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=48.67 E-value=14 Score=20.03 Aligned_cols=21 Identities=14% Similarity=0.417 Sum_probs=17.4
Q ss_pred hhhhhHHHHHHHHhccccCHH
Q 037633 55 KKEISMELYDFCLDHGHADRN 75 (138)
Q Consensus 55 ~k~ISkeLY~~~lk~~yaD~~ 75 (138)
+..|.+=+++||+++||.+..
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta 23 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETA 23 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHH
Confidence 456788899999999997765
No 11
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=46.76 E-value=11 Score=25.00 Aligned_cols=12 Identities=33% Similarity=0.816 Sum_probs=9.7
Q ss_pred hhhhHHHHHHHH
Q 037633 56 KEISMELYDFCL 67 (138)
Q Consensus 56 k~ISkeLY~~~l 67 (138)
+.|+|+||||.-
T Consensus 31 rKINrdLfdFSt 42 (48)
T PF14077_consen 31 RKINRDLFDFST 42 (48)
T ss_pred HHHhHHHHhhhh
Confidence 349999999964
No 12
>PRK11798 ClpXP protease specificity-enhancing factor; Provisional
Probab=42.24 E-value=16 Score=28.75 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHhccccC
Q 037633 57 EISMELYDFCLDHGHAD 73 (138)
Q Consensus 57 ~ISkeLY~~~lk~~yaD 73 (138)
-+=|-|||||++||+--
T Consensus 10 YLlRA~yeW~~Dn~~TP 26 (138)
T PRK11798 10 YLLRALYEWIVDNGLTP 26 (138)
T ss_pred HHHHHHHHHHhhCCCCc
Confidence 35578999999999643
No 13
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=41.56 E-value=10 Score=23.90 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=15.8
Q ss_pred Ccce-Eeeccc-cccccceeeeeecc
Q 037633 102 QSTC-VCRVPK-NLREEKVIEFVHCC 125 (138)
Q Consensus 102 gttC-ICRVPk-~l~~~~~~eCv~CG 125 (138)
+.+| .|.+|. +...+ .+-||+|+
T Consensus 17 ~~~Cp~C~~PL~~~k~g-~~~Cv~C~ 41 (41)
T PF06677_consen 17 DEHCPDCGTPLMRDKDG-KIYCVSCG 41 (41)
T ss_pred cCccCCCCCeeEEecCC-CEECCCCC
Confidence 3455 678998 64444 57899885
No 14
>cd08796 Death_IRAK-M Death domain of Interleukin 1 Receptor Associated Kinase-M. Death Domain (DD) of Interleukin-1 Receptor-Associated Kinase M (IRAK-M). IRAKs are essential components of innate immunity and inflammation in mammals and other vertebrates. They are involved in signal transduction pathways involving IL-1 and IL-18 receptors, Toll-like receptors(TLRs), nuclear factor-kappaB (NF-kB), and mitogen-activated protein kinases (MAPKs). IRAKs contain an N-terminal DD domain and a C-terminal kinase domain. IRAK-M, also called IRAK-3, is an inactive kinase present only in macrophages in an inducible manner. It is a negative regulator of TLR signaling and it contributes to the attenuation of NF-kB activation. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitme
Probab=36.78 E-value=12 Score=27.20 Aligned_cols=62 Identities=18% Similarity=0.263 Sum_probs=42.5
Q ss_pred CCCCCccchHHHHHHHHHHHHHhhCCCCCCCCcceeeeecchhhhhhhHHHHHHHHhccccCH
Q 037633 12 PPEGCWDLIEPTLRKFQAKMTEAENDPHDGKRKSAIFFYLYHRKKEISMELYDFCLDHGHADR 74 (138)
Q Consensus 12 pP~G~~e~IeptL~e~~~kmreae~e~~~gkrk~eYIydlyyk~k~ISkeLY~~~lk~~yaD~ 74 (138)
+|.+ |..+...+.-...++|.+++....|+..++=+-+.+=.+-..=.||++-+.++|+.-+
T Consensus 23 ~~~~-W~~lA~~i~~~~~~vr~ie~~~~~G~SPT~eLL~~Wg~~n~TV~eL~~~L~~~~l~rA 84 (89)
T cd08796 23 GGLG-WRTLAERLSSSWLEVRHIEKYVVQGKSGTRELLWSWAQKNKTVGDLLQVLDEMGHARA 84 (89)
T ss_pred cccc-HHHHHHHHhccHHHHHHHHHHHHcCCCcHHHHHHHHHccCCCHHHHHHHHHHcCcHHH
Confidence 3567 9999999998889999999877777777662222221222233578888888876543
No 15
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=35.60 E-value=24 Score=31.57 Aligned_cols=60 Identities=23% Similarity=0.444 Sum_probs=45.3
Q ss_pred ccCHHHHhhcCCCccccccccccccc-----------------CCCCC-CcceEeeccc-c--cc-ccceeeeeecc---
Q 037633 71 HADRNLIAKCKKPGYESLCCLRCMQP-----------------RDHNF-QSTCVCRVPK-N--LR-EEKVIEFVHCC--- 125 (138)
Q Consensus 71 yaD~~LIaKWKK~GYE~LCCl~CIq~-----------------~~~n~-gttCICRVPk-~--l~-~~~~~eCv~CG--- 125 (138)
+.+..|+-=|-|.-++=-|+..+.-+ -+||| |--|+|-+|- . .. ++..+||+-|-
T Consensus 79 H~~H~lveL~tKR~FrCDCg~sk~g~~sc~l~~~~~~~n~~N~YNhNfqG~~C~Cd~~Ypdp~~~~e~~m~QC~iCEDWF 158 (345)
T KOG2752|consen 79 HDGHELVELYTKRNFRCDCGNSKFGRCSCNLLEDKDAENSENLYNHNFQGLFCKCDTPYPDPVRTEEGEMLQCVICEDWF 158 (345)
T ss_pred cCCceeeeccccCCcccccccccccccccccccccccccchhhhhhhhcceeEEecCCCCCccccccceeeeEEeccchh
Confidence 35667778899999998898766533 23677 8999998877 5 32 34679999999
Q ss_pred -ccccc
Q 037633 126 -WRGRA 130 (138)
Q Consensus 126 -C~GCa 130 (138)
|-||.
T Consensus 159 Hce~c~ 164 (345)
T KOG2752|consen 159 HCEGCM 164 (345)
T ss_pred cccccC
Confidence 99995
No 16
>COG2969 SspB Stringent starvation protein B [General function prediction only]
Probab=35.51 E-value=23 Score=28.53 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHhccc
Q 037633 57 EISMELYDFCLDHGH 71 (138)
Q Consensus 57 ~ISkeLY~~~lk~~y 71 (138)
-+=|.|||||+++++
T Consensus 11 YLlRA~yeWl~DN~~ 25 (155)
T COG2969 11 YLLRALYEWLLDNQL 25 (155)
T ss_pred hHHHHHHHHHhcCCC
Confidence 366889999999996
No 17
>PRK00420 hypothetical protein; Validated
Probab=33.19 E-value=19 Score=27.27 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=14.6
Q ss_pred cce-Eeeccc-cccccceeeeeecc
Q 037633 103 STC-VCRVPK-NLREEKVIEFVHCC 125 (138)
Q Consensus 103 ttC-ICRVPk-~l~~~~~~eCv~CG 125 (138)
.+| .|-.|- .+. +..+.|++||
T Consensus 24 ~~CP~Cg~pLf~lk-~g~~~Cp~Cg 47 (112)
T PRK00420 24 KHCPVCGLPLFELK-DGEVVCPVHG 47 (112)
T ss_pred CCCCCCCCcceecC-CCceECCCCC
Confidence 455 677777 653 4468888887
No 18
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=32.53 E-value=14 Score=32.34 Aligned_cols=16 Identities=31% Similarity=0.702 Sum_probs=13.2
Q ss_pred eeeecc---hhhhhhhHHH
Q 037633 47 IFFYLY---HRKKEISMEL 62 (138)
Q Consensus 47 YIydly---yk~k~ISkeL 62 (138)
|+|+|| -||.+||+-|
T Consensus 254 FlfN~YitkeKR~ElSr~l 272 (308)
T KOG0487|consen 254 FLFNMYITKEKRLELSRTL 272 (308)
T ss_pred HHHHHHHhHHHHHHHHHhc
Confidence 999999 4677888865
No 19
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=32.07 E-value=16 Score=21.87 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=11.1
Q ss_pred cccccceeeeeecccc
Q 037633 112 NLREEKVIEFVHCCWR 127 (138)
Q Consensus 112 ~l~~~~~~eCv~CGC~ 127 (138)
+++....|.|.+||.|
T Consensus 11 ~~~~~~~irC~~CG~R 26 (32)
T PF03604_consen 11 ELKPGDPIRCPECGHR 26 (32)
T ss_dssp -BSTSSTSSBSSSS-S
T ss_pred EcCCCCcEECCcCCCe
Confidence 3555667999999986
No 20
>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]
Probab=29.59 E-value=20 Score=26.30 Aligned_cols=11 Identities=18% Similarity=0.081 Sum_probs=8.5
Q ss_pred cccccccCCCC
Q 037633 124 CCWRGRASGDR 134 (138)
Q Consensus 124 CGC~GCaS~D~ 134 (138)
=+|.||+|++.
T Consensus 51 GaC~gC~sS~~ 61 (93)
T COG0694 51 GACSGCPSSTV 61 (93)
T ss_pred CcCCCCcccHH
Confidence 46899999864
No 21
>PF08343 RNR_N: Ribonucleotide reductase N-terminal; InterPro: IPR013554 This domain is found at the N terminus of bacterial ribonucleoside-diphosphate reductases (ribonucleotide reductases, RNRs) which catalyse the formation of deoxyribonucleotides []. It occurs together with the RNR all-alpha domain (IPR013509 from INTERPRO) and the RNR barrel domain (IPR000788 from INTERPRO). ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0006260 DNA replication, 0055114 oxidation-reduction process, 0005971 ribonucleoside-diphosphate reductase complex; PDB: 1PEM_A 2BQ1_E 1PEU_A 1PEQ_A 1PEO_A.
Probab=28.60 E-value=55 Score=23.26 Aligned_cols=55 Identities=16% Similarity=0.185 Sum_probs=31.6
Q ss_pred CCCCCccchHHHHHHHHHHHHHhhCCCCCCCCcceeeeecchhhhhhhHHHHHHHHhccccCHHHHhhcC
Q 037633 12 PPEGCWDLIEPTLRKFQAKMTEAENDPHDGKRKSAIFFYLYHRKKEISMELYDFCLDHGHADRNLIAKCK 81 (138)
Q Consensus 12 pP~G~~e~IeptL~e~~~kmreae~e~~~gkrk~eYIydlyyk~k~ISkeLY~~~lk~~yaD~~LIaKWK 81 (138)
+++| .-.++.-.+.+++=|++-.+.... -| .=-+|=.+||+++||-|+.++.+..
T Consensus 12 ~~~G-~~~l~kD~eA~~~y~~~~V~pnt~-------~F-------~S~~Erl~yLv~~~YYe~~~l~~Ys 66 (82)
T PF08343_consen 12 DEDG-KIQLEKDKEAVRAYFKEHVNPNTV-------KF-------NSLKERLDYLVENDYYEKEVLDKYS 66 (82)
T ss_dssp -TTS----THHHHHHHHHHHHHTTGGGB-----------------SSHHHHHHHHHHTTSB-HHHHTTS-
T ss_pred CCCC-CcCchhHHHHHHHHHHHhccccee-------ec-------CCHHHHHHHHHHcCcHHHHHHHhCC
Confidence 6788 666777777777777772221110 01 0113568999999999999988653
No 22
>cd08793 Death_IRAK4 Death domain of Interleukin-1 Receptor-Associated Kinase 4. Death Domain (DD) of Interleukin-1 Receptor-Associated Kinase 4 (IRAK4). IRAKs are essential components of innate immunity and inflammation in mammals and other vertebrates. They are involved in signal transduction pathways involving IL-1 and IL-18 receptors, Toll-like receptors, nuclear factor-kappaB, and mitogen-activated protein kinases. IRAKs contain an N-terminal DD domain and a C-terminal kinase domain. IRAK4 is an active kinase that is also involved in T-cell receptor signaling pathways, implying that it may function in acquired immunity and not just in innate immunity. It is known as the master IRAK member because its absence strongly impairs TLR- and IL-1-mediated signaling and innate immune defenses, while the absence of other IRAK proteins only shows slight effects. IRAK4-deficient patients have impaired inflammatory responses and recurrent life-threatening infections. DDs are protein-protein int
Probab=27.14 E-value=17 Score=27.17 Aligned_cols=59 Identities=19% Similarity=0.325 Sum_probs=39.7
Q ss_pred CCCCCccchHHHHHH------HHH-HHHHhhCCCCCCCCcce---eeeecchhhhhhhHHHHHHHHhccccCH
Q 037633 12 PPEGCWDLIEPTLRK------FQA-KMTEAENDPHDGKRKSA---IFFYLYHRKKEISMELYDFCLDHGHADR 74 (138)
Q Consensus 12 pP~G~~e~IeptL~e------~~~-kmreae~e~~~gkrk~e---YIydlyyk~k~ISkeLY~~~lk~~yaD~ 74 (138)
|+++ |+.|...+.. |.. ++|..|.....|+..++ .++.- ..+.=.+|++-+.+.++..+
T Consensus 20 p~~~-W~~LA~~i~~~~~~~~y~~~ei~~ie~~~~~g~SPT~~LL~dWgt---~N~TV~~L~~lL~k~~l~~a 88 (100)
T cd08793 20 PQEG-WKKIAVAIKKPSGDPRYSQFHIRRFEALVQQGKSPTCELLFDWGT---TNCTVGDLVDLLIQNEFFAP 88 (100)
T ss_pred Cccc-HHHHHHHHhcccCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHcc---CCCcHHHHHHHHHHcccHHH
Confidence 6788 9999998864 766 78888776556666665 33322 23333478888888876544
No 23
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.30 E-value=23 Score=25.41 Aligned_cols=12 Identities=25% Similarity=0.564 Sum_probs=10.2
Q ss_pred HHHhhcCCCccc
Q 037633 75 NLIAKCKKPGYE 86 (138)
Q Consensus 75 ~LIaKWKK~GYE 86 (138)
.|.++||+.|++
T Consensus 36 ~L~~~wR~~G~~ 47 (74)
T COG3433 36 ALLERWRKRGAD 47 (74)
T ss_pred HHHHHHHHcCCc
Confidence 578999999975
No 24
>PTZ00087 thrombosponding-related protein; Provisional
Probab=26.03 E-value=21 Score=31.61 Aligned_cols=19 Identities=32% Similarity=0.630 Sum_probs=17.4
Q ss_pred eeeecchhhhhhhHHHHHH
Q 037633 47 IFFYLYHRKKEISMELYDF 65 (138)
Q Consensus 47 YIydlyyk~k~ISkeLY~~ 65 (138)
.+|.+||++|.-.+|||+=
T Consensus 314 ily~ify~~k~~ekelyen 332 (340)
T PTZ00087 314 ILYHIFYKKKGAEKELYEN 332 (340)
T ss_pred HHHHHhhhccchHHHHHHh
Confidence 6799999999999999984
No 25
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=25.19 E-value=75 Score=20.95 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=16.7
Q ss_pred CCCccchHHHHHHHHHHHHHhh
Q 037633 14 EGCWDLIEPTLRKFQAKMTEAE 35 (138)
Q Consensus 14 ~G~~e~IeptL~e~~~kmreae 35 (138)
+- +|.||..++++++++.+.+
T Consensus 12 e~-~d~IEqkiedid~qIaeLe 32 (46)
T PF08946_consen 12 EH-YDNIEQKIEDIDEQIAELE 32 (46)
T ss_dssp ----THHHHHHHHHHHHHHHHH
T ss_pred HH-HHhHHHhHHHHHHHHHHHH
Confidence 44 8999999999999998887
No 26
>PF08574 DUF1762: Protein of unknown function (DUF1762); InterPro: IPR013883 Iwr1 is involved in transcription from polymerase II promoters; it interacts with with most of the polymerase II subunits []. Deletion of this protein results in hypersensitivity to the K1 killer toxin []
Probab=22.13 E-value=39 Score=23.42 Aligned_cols=9 Identities=22% Similarity=0.556 Sum_probs=7.7
Q ss_pred eeeecchhh
Q 037633 47 IFFYLYHRK 55 (138)
Q Consensus 47 YIydlyyk~ 55 (138)
|||++||.+
T Consensus 6 YVYD~Y~~~ 14 (77)
T PF08574_consen 6 YVYDVYYRE 14 (77)
T ss_pred EEEEEEEEc
Confidence 999999943
No 27
>COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=21.08 E-value=31 Score=24.23 Aligned_cols=11 Identities=27% Similarity=0.570 Sum_probs=8.9
Q ss_pred eeeeeeccccc
Q 037633 118 VIEFVHCCWRG 128 (138)
Q Consensus 118 ~~eCv~CGC~G 128 (138)
.+|||.||-.-
T Consensus 32 ~vECV~CG~~~ 42 (66)
T COG3529 32 IVECVKCGHHM 42 (66)
T ss_pred eEehhhcchHh
Confidence 59999998654
No 28
>PF10737 GerPC: Spore germination protein GerPC; InterPro: IPR019673 GerPC is required for the formation of functionally normal spores. The gerP locus encodes a number of proteins which are thought to be involved in the establishment of normal spore coat structure and/or permeability, which allows the access of germinants to their receptor [].
Probab=21.06 E-value=1.1e+02 Score=24.78 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=29.4
Q ss_pred chHHHHHHHHHHHHHhhCCCCCCCCcceeeeecch
Q 037633 19 LIEPTLRKFQAKMTEAENDPHDGKRKSAIFFYLYH 53 (138)
Q Consensus 19 ~IeptL~e~~~kmreae~e~~~gkrk~eYIydlyy 53 (138)
.+|..|.+|+++|.+..+.|+..--|.||=||...
T Consensus 3 ~LE~~~~~l~~e~~~Lk~~p~~~iekiEYkFdqLK 37 (176)
T PF10737_consen 3 RLEQRLQELQQELEELKQQPPTSIEKIEYKFDQLK 37 (176)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCceeheeeehhhhe
Confidence 47889999999999999888777778888888763
No 29
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=20.82 E-value=65 Score=20.03 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=18.0
Q ss_pred eeeeecc----hhhhhhhHHHHHHHHh
Q 037633 46 AIFFYLY----HRKKEISMELYDFCLD 68 (138)
Q Consensus 46 eYIydly----yk~k~ISkeLY~~~lk 68 (138)
-||..++ |+++-|-+.|+++++.
T Consensus 26 ~~i~~~~v~~~~r~~Gig~~L~~~~~~ 52 (83)
T PF00583_consen 26 AYIHRLAVDPEYRGQGIGSKLLQAAEE 52 (83)
T ss_dssp EEEEEEEECGGGTTSSHHHHHHHHHHH
T ss_pred EEEEEEEEcHHHhhCCCchhhhhhhhh
Confidence 3777777 8888888888887765
Done!