Query 037633
Match_columns 138
No_of_seqs 104 out of 160
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 04:10:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037633.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037633hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d4p_A Hypothetical protein TT 61.4 5.5 0.00019 29.7 2.8 46 44-89 61-119 (141)
2 3nrw_A Phage integrase/site-sp 55.7 6.4 0.00022 26.0 2.1 24 60-83 84-107 (117)
3 3lys_A Prophage PI2 protein 01 52.0 5.9 0.0002 25.7 1.5 30 58-87 78-107 (112)
4 2l6w_A Beta-type platelet-deri 53.4 3.9 0.00013 25.2 0.0 11 76-86 28-39 (39)
5 1ou8_A Stringent starvation pr 45.8 9 0.00031 28.1 1.7 14 58-71 12-25 (111)
6 1yfn_A Stringent starvation pr 44.6 9.5 0.00033 28.2 1.7 16 56-71 11-26 (118)
7 3o70_A PHD finger protein 13; 42.2 8.1 0.00028 25.1 0.9 27 98-126 15-41 (68)
8 1ou9_A Stringent starvation pr 40.7 12 0.0004 28.2 1.7 15 58-72 12-26 (129)
9 3i5p_A Nucleoporin NUP170; hel 39.8 6.9 0.00023 34.7 0.3 60 16-76 127-198 (525)
10 2wbn_A G2P, terminase large su 38.0 16 0.00054 27.9 2.1 41 46-86 78-128 (212)
11 2kj5_A Phage integrase; GFT PS 33.4 25 0.00085 22.3 2.2 25 60-84 80-104 (116)
12 2khq_A Integrase; all-alpha, s 32.9 25 0.00087 22.0 2.2 23 60-82 76-98 (110)
13 2kkp_A Phage integrase; SAM-li 32.7 25 0.00084 22.2 2.1 23 60-82 83-105 (117)
14 2oxo_A Integrase; DNA-binding 31.7 16 0.00056 21.9 1.0 25 59-83 74-98 (103)
15 2kob_A Uncharacterized protein 31.6 27 0.00092 21.7 2.1 22 60-81 74-95 (108)
16 2key_A Putative phage integras 31.2 28 0.00096 22.0 2.2 24 60-83 83-106 (112)
17 3o7a_A PHD finger protein 13 v 30.5 13 0.00044 22.6 0.4 23 102-126 4-26 (52)
18 2kiw_A INT protein; alpha, str 28.0 28 0.00094 21.9 1.7 25 60-84 73-97 (111)
19 1jmt_B Splicing factor U2AF 65 28.0 16 0.00056 20.8 0.5 12 9-22 9-20 (28)
20 2lv9_A Histone-lysine N-methyl 26.4 16 0.00054 25.1 0.3 22 103-126 29-50 (98)
21 2kd1_A DNA integration/recombi 25.9 32 0.0011 21.8 1.7 24 60-83 81-104 (118)
22 3epz_A DNA (cytosine-5)-methyl 24.9 25 0.00087 29.2 1.3 23 47-69 165-187 (268)
23 3h92_A Uncharacterized ATP-bin 23.8 37 0.0013 24.1 1.8 16 56-71 52-67 (92)
24 1we9_A PHD finger family prote 23.7 34 0.0012 21.1 1.5 26 99-125 3-29 (64)
25 1x4i_A Inhibitor of growth pro 23.7 27 0.00091 22.8 1.0 25 99-126 3-27 (70)
26 1xgw_A Epsin 4; ENTH, enthopro 23.4 41 0.0014 25.9 2.2 46 25-70 33-104 (176)
27 2pr1_A Uncharacterized N-acety 22.7 53 0.0018 22.3 2.5 42 47-88 84-134 (163)
28 3kqi_A GRC5, PHD finger protei 21.9 22 0.00074 23.1 0.3 27 98-125 6-32 (75)
29 3vej_A Ubiquitin-like protein 21.1 27 0.00093 21.5 0.6 9 17-25 8-16 (41)
30 4dkw_A Large terminase protein 20.5 27 0.00094 26.8 0.6 42 45-86 53-110 (211)
31 2kj9_A Integrase; DNA_BRE_C su 20.4 61 0.0021 21.1 2.3 24 60-83 84-107 (118)
32 2hx6_A Ribonuclease, GP61.9; a 20.3 50 0.0017 25.4 2.0 49 20-68 18-83 (153)
33 2vnf_A ING 4, P29ING4, inhibit 20.1 21 0.00071 22.5 -0.1 27 98-127 6-32 (60)
No 1
>2d4p_A Hypothetical protein TTHA1254; structural genomics, NPPSFA, national project on protein STR and functional analyses; 1.70A {Thermus thermophilus} SCOP: d.108.1.1 PDB: 2d4o_A
Probab=61.38 E-value=5.5 Score=29.71 Aligned_cols=46 Identities=17% Similarity=0.114 Sum_probs=34.4
Q ss_pred cceeeeecchhhhhhhHHHHH----HHHhcccc---------CHHHHhhcCCCcccccc
Q 037633 44 KSAIFFYLYHRKKEISMELYD----FCLDHGHA---------DRNLIAKCKKPGYESLC 89 (138)
Q Consensus 44 k~eYIydlyyk~k~ISkeLY~----~~lk~~ya---------D~~LIaKWKK~GYE~LC 89 (138)
+.-|||||+|+++-|.+.|-+ |+.++|.. +....+-|.+.||.+-=
T Consensus 61 ~~~~L~dl~~R~~GIG~~Ll~~a~~~a~~~G~~rv~L~~~~~N~~a~~fye~~Gf~~~~ 119 (141)
T 2d4p_A 61 TTVLVTRIEGRSVEALRGLLRAVVKSAYDAGVYEVALHLDPERKELEEALKAEGFALGP 119 (141)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHHHHHHHHTTCSEEEECCCTTCHHHHHHHHHTTCCCCS
T ss_pred eEEEEeHHhhccccHHHHHHHHHHHHHHHCCCCEEEEEecccCHHHHHHHHHCCCEecC
Confidence 334999999999999998876 55556632 24477889999997643
No 2
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=55.73 E-value=6.4 Score=26.03 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=20.4
Q ss_pred HHHHHHHHhccccCHHHHhhcCCC
Q 037633 60 MELYDFCLDHGHADRNLIAKCKKP 83 (138)
Q Consensus 60 keLY~~~lk~~yaD~~LIaKWKK~ 83 (138)
+-+|+|++++|+++.|..+.-+.+
T Consensus 84 r~f~~~l~~~g~i~~nP~~~v~~p 107 (117)
T 3nrw_A 84 KNWLEYLARIDVVDEDLPEKVHVP 107 (117)
T ss_dssp HHHHHHHHHTTSSCTTSGGGCCCC
T ss_pred HHHHHHHHHcCCcccCHHHHccCC
Confidence 469999999999999988876654
No 3
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=52.04 E-value=5.9 Score=25.75 Aligned_cols=30 Identities=10% Similarity=0.220 Sum_probs=26.1
Q ss_pred hhHHHHHHHHhccccCHHHHhhcCCCcccc
Q 037633 58 ISMELYDFCLDHGHADRNLIAKCKKPGYES 87 (138)
Q Consensus 58 ISkeLY~~~lk~~yaD~~LIaKWKK~GYE~ 87 (138)
+=+.+++|.+++|+++.|-++.-+.+|-|.
T Consensus 78 ~l~~i~~~Av~~g~i~~NP~~~v~~~~~~~ 107 (112)
T 3lys_A 78 RVRASIQCLIEEGRLQKDFTTRAVVKGLEH 107 (112)
T ss_dssp HHHHHHHHHHHTTSCSSCTTSSTTCCCCCC
T ss_pred HHHHHHHHHHHCCCcccCccccceeccccc
Confidence 335799999999999999999999999773
No 4
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=53.42 E-value=3.9 Score=25.20 Aligned_cols=11 Identities=55% Similarity=0.815 Sum_probs=8.0
Q ss_pred HHhhcC-CCccc
Q 037633 76 LIAKCK-KPGYE 86 (138)
Q Consensus 76 LIaKWK-K~GYE 86 (138)
||.+|+ ||-||
T Consensus 28 Li~~w~qKPrYe 39 (39)
T 2l6w_A 28 LIMLWQKKPRYE 39 (39)
Confidence 788998 55565
No 5
>1ou8_A Stringent starvation protein B homolog; peptide-binding pocket, protein-peptide complex, homodimer, transport protein; 1.60A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1zsz_A 1twb_A 1zsz_B
Probab=45.79 E-value=9 Score=28.09 Aligned_cols=14 Identities=21% Similarity=0.515 Sum_probs=12.2
Q ss_pred hhHHHHHHHHhccc
Q 037633 58 ISMELYDFCLDHGH 71 (138)
Q Consensus 58 ISkeLY~~~lk~~y 71 (138)
+=|.+||||+++++
T Consensus 12 LiRA~yeWi~DN~~ 25 (111)
T 1ou8_A 12 LLRAYYDWLVDNSF 25 (111)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCC
Confidence 55789999999996
No 6
>1yfn_A Stringent starvation protein B; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli} SCOP: b.136.1.1 PDB: 1ox9_A 1ox8_A
Probab=44.63 E-value=9.5 Score=28.22 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=13.2
Q ss_pred hhhhHHHHHHHHhccc
Q 037633 56 KEISMELYDFCLDHGH 71 (138)
Q Consensus 56 k~ISkeLY~~~lk~~y 71 (138)
--+=|.+||||+++++
T Consensus 11 PYLiRA~yeWi~DN~~ 26 (118)
T 1yfn_A 11 PYLLRAFYEWLLDNQL 26 (118)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHcCCC
Confidence 3356789999999997
No 7
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=42.18 E-value=8.1 Score=25.13 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=19.1
Q ss_pred CCCCCcceEeeccccccccceeeeeeccc
Q 037633 98 DHNFQSTCVCRVPKNLREEKVIEFVHCCW 126 (138)
Q Consensus 98 ~~n~gttCICRVPk~l~~~~~~eCv~CGC 126 (138)
+.+-+..|||+.|.. .+..|+|..|.-
T Consensus 15 ~~~~~~~CiC~~~~~--~~~MIqCd~C~~ 41 (68)
T 3o70_A 15 YFQGLVTCFCMKPFA--GRPMIECNECHT 41 (68)
T ss_dssp TTTTCCCSTTCCCCT--TCCEEECTTTCC
T ss_pred CCCCceEeECCCcCC--CCCEEECCCCCc
Confidence 344578899998853 235899988753
No 8
>1ou9_A Stringent starvation protein B homolog; SSRA peptide-binding protein, homodimer, transport protein; 1.80A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1oul_A 1zsz_C
Probab=40.73 E-value=12 Score=28.17 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=12.5
Q ss_pred hhHHHHHHHHhcccc
Q 037633 58 ISMELYDFCLDHGHA 72 (138)
Q Consensus 58 ISkeLY~~~lk~~ya 72 (138)
+=|.+||||+++++-
T Consensus 12 LiRA~yeWi~DN~~T 26 (129)
T 1ou9_A 12 LLRAYYDWLVDNSFT 26 (129)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCc
Confidence 557899999999963
No 9
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=39.77 E-value=6.9 Score=34.70 Aligned_cols=60 Identities=15% Similarity=0.262 Sum_probs=30.2
Q ss_pred CccchHHHHHHHHHHHHHhhCCCCCC----------CCcceeeeec--chhhhhhhHHHHHHHHhccccCHHH
Q 037633 16 CWDLIEPTLRKFQAKMTEAENDPHDG----------KRKSAIFFYL--YHRKKEISMELYDFCLDHGHADRNL 76 (138)
Q Consensus 16 ~~e~IeptL~e~~~kmreae~e~~~g----------krk~eYIydl--yyk~k~ISkeLY~~~lk~~yaD~~L 76 (138)
||+.|-.+|+.++.+....+.+...| +.+. =+|++ =.+.+..--.||+|++.+|..|.-|
T Consensus 127 cY~~I~~~L~~ld~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~s~DelFH~~LYdWli~~gl~d~LL 198 (525)
T 3i5p_A 127 VYDLVFDTLIKVDELAEKKQSSKTQNQISISNDDEVKLRQ-KSYEAALKYNDRLFHYHMYDWLVSQNREEKLL 198 (525)
T ss_dssp HHHHHHHHHHHTC------------------------CCS-TTHHHHSSSCCHHHHHHHHHHHHHTTCGGGGG
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCCccccccchhHHHHHH-HHHHHHHcCChHHHHHHHHHHHHhCCCcchhh
Confidence 68888888988876554222221111 1111 12211 1344555567999999999887644
No 10
>2wbn_A G2P, terminase large subunit; large terminase, nuclease, viral protein, DNA packaging; 1.90A {Bacillus phage SPP1} PDB: 2wc9_A
Probab=37.99 E-value=16 Score=27.86 Aligned_cols=41 Identities=15% Similarity=0.011 Sum_probs=33.9
Q ss_pred eeeeecchhhhhhhHHHHHHHHhccc---------cCHHHHhhcCCC-ccc
Q 037633 46 AIFFYLYHRKKEISMELYDFCLDHGH---------ADRNLIAKCKKP-GYE 86 (138)
Q Consensus 46 eYIydlyyk~k~ISkeLY~~~lk~~y---------aD~~LIaKWKK~-GYE 86 (138)
=||++-||.++....++.+++.+.|| |.+.+|+-.++. |+.
T Consensus 78 lyi~~E~y~~~~~~~~~a~~i~~~~~~~~~i~~DsA~~~~I~~l~~~~G~~ 128 (212)
T 2wbn_A 78 IYAIDELVDHKVSLKRTADFVRKNKYESARIIADSSEPRSIDALKLEHGIN 128 (212)
T ss_dssp EEEEEEEEESSCCHHHHHHHHHHTTCTTSCEEECTTCHHHHHHHHHTTCCT
T ss_pred EEEEEehhhcCCCHHHHHHHHHHcCCCCceeeeCCcCHHHHHHHHHhCCcc
Confidence 39999999988888899999887766 567899999886 873
No 11
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=33.44 E-value=25 Score=22.31 Aligned_cols=25 Identities=8% Similarity=0.207 Sum_probs=19.9
Q ss_pred HHHHHHHHhccccCHHHHhhcCCCc
Q 037633 60 MELYDFCLDHGHADRNLIAKCKKPG 84 (138)
Q Consensus 60 keLY~~~lk~~yaD~~LIaKWKK~G 84 (138)
+.+|+|++++|+++.|-+..-+.+.
T Consensus 80 ~~~~~~A~~~~~i~~NP~~~i~~p~ 104 (116)
T 2kj5_A 80 KRMFNYAIKRHIIEYNPAAAFDPGD 104 (116)
T ss_dssp HHHHHHHHHTTSCSSCGGGGSCCCC
T ss_pred HHHHHHHHHcCccccCchhhCCCCC
Confidence 4789999999999988877666543
No 12
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=32.90 E-value=25 Score=21.96 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=18.7
Q ss_pred HHHHHHHHhccccCHHHHhhcCC
Q 037633 60 MELYDFCLDHGHADRNLIAKCKK 82 (138)
Q Consensus 60 keLY~~~lk~~yaD~~LIaKWKK 82 (138)
+.+|+|++++|+++.|-+..-+.
T Consensus 76 ~~~~~~a~~~~~i~~NP~~~v~~ 98 (110)
T 2khq_A 76 RNAFDDAIHEGYVIKNPTYKAEL 98 (110)
T ss_dssp HHHHHHHHHTTCCCCCGGGGCCC
T ss_pred HHHHHHHHHCCCcccCccccccc
Confidence 57899999999999887765544
No 13
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=32.74 E-value=25 Score=22.19 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=15.8
Q ss_pred HHHHHHHHhccccCHHHHhhcCC
Q 037633 60 MELYDFCLDHGHADRNLIAKCKK 82 (138)
Q Consensus 60 keLY~~~lk~~yaD~~LIaKWKK 82 (138)
+.+|+|++++|+++.|-...-+.
T Consensus 83 ~~~~~~A~~~~~i~~nP~~~i~~ 105 (117)
T 2kkp_A 83 HEAMSQARESGLLLQNPTEAAKP 105 (117)
T ss_dssp HHHHHHHHTTTSCSSCGGGGSCC
T ss_pred HHHHHHHHHCCCcccCccccCCC
Confidence 36778888888877776655443
No 14
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=31.73 E-value=16 Score=21.91 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=16.7
Q ss_pred hHHHHHHHHhccccCHHHHhhcCCC
Q 037633 59 SMELYDFCLDHGHADRNLIAKCKKP 83 (138)
Q Consensus 59 SkeLY~~~lk~~yaD~~LIaKWKK~ 83 (138)
=+.+|+|++++|+++.|-...-+.+
T Consensus 74 l~~~~~~a~~~~~i~~nP~~~v~~~ 98 (103)
T 2oxo_A 74 LSDAFREAIAEGHITTNHVAATRAA 98 (103)
T ss_dssp HHHHHHHHHHTTSCSSCTTC-----
T ss_pred HHHHHHHHHHcCCCCCChHhhcCCC
Confidence 3578999999999988876654443
No 15
>2kob_A Uncharacterized protein; alpha beta, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium leptum dsm 753}
Probab=31.57 E-value=27 Score=21.66 Aligned_cols=22 Identities=9% Similarity=0.259 Sum_probs=17.1
Q ss_pred HHHHHHHHhccccCHHHHhhcC
Q 037633 60 MELYDFCLDHGHADRNLIAKCK 81 (138)
Q Consensus 60 keLY~~~lk~~yaD~~LIaKWK 81 (138)
+.+|+|.+++|+++.|-+..-+
T Consensus 74 ~~~~~~A~~~~~i~~NP~~~v~ 95 (108)
T 2kob_A 74 SQIFRLAIENRAIDFNPADYVR 95 (108)
T ss_dssp HHHHHHHHHTTSSSSCGGGTCC
T ss_pred HHHHHHHHHcCCcccCccccCc
Confidence 5789999999998888766443
No 16
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown F protein structure initiative; NMR {Bacteroides fragilis}
Probab=31.18 E-value=28 Score=21.99 Aligned_cols=24 Identities=4% Similarity=0.011 Sum_probs=19.2
Q ss_pred HHHHHHHHhccccCHHHHhhcCCC
Q 037633 60 MELYDFCLDHGHADRNLIAKCKKP 83 (138)
Q Consensus 60 keLY~~~lk~~yaD~~LIaKWKK~ 83 (138)
+-+|+|++++|+++.|-...-+.|
T Consensus 83 r~~~~~a~~~~~i~~nP~~~v~~p 106 (112)
T 2key_A 83 KIYVSAAIKKGYMENDPFKDFGLE 106 (112)
T ss_dssp HHHHHHHHHTTSCCSCHHHHHTCC
T ss_pred HHHHHHHHHCCCcccCCcccCCCc
Confidence 468999999999998877766554
No 17
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=30.55 E-value=13 Score=22.59 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=16.6
Q ss_pred CcceEeeccccccccceeeeeeccc
Q 037633 102 QSTCVCRVPKNLREEKVIEFVHCCW 126 (138)
Q Consensus 102 gttCICRVPk~l~~~~~~eCv~CGC 126 (138)
...|||+.|.. .+..|+|-+|.-
T Consensus 4 ~~~C~C~~~~~--~~~MI~Cd~C~~ 26 (52)
T 3o7a_A 4 LVTCFCMKPFA--GRPMIECNECHT 26 (52)
T ss_dssp CBCSTTCCBCT--TCCEEECTTTCC
T ss_pred CeEEEeCCcCC--CCCEEEcCCCCc
Confidence 45799998863 346899988753
No 18
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=27.97 E-value=28 Score=21.90 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=19.3
Q ss_pred HHHHHHHHhccccCHHHHhhcCCCc
Q 037633 60 MELYDFCLDHGHADRNLIAKCKKPG 84 (138)
Q Consensus 60 keLY~~~lk~~yaD~~LIaKWKK~G 84 (138)
+.+|+|++++|+++.|-+..-+.+.
T Consensus 73 r~~~~~A~~~~~i~~nP~~~i~~pk 97 (111)
T 2kiw_A 73 NMIFKYAYDTRLIKAMPSEGIKRPK 97 (111)
T ss_dssp HHHHHHHHHTTSCSCCTTTTCCCCS
T ss_pred HHHHHHHHHhCChhhCccccCCCCC
Confidence 5789999999999888776555443
No 19
>1jmt_B Splicing factor U2AF 65 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens}
Probab=27.96 E-value=16 Score=20.83 Aligned_cols=12 Identities=42% Similarity=0.911 Sum_probs=10.0
Q ss_pred CCCCCCCCccchHH
Q 037633 9 VQYPPEGCWDLIEP 22 (138)
Q Consensus 9 k~~pP~G~~e~Iep 22 (138)
-- ||+| ||.|-|
T Consensus 9 Dv-pP~G-yE~vtp 20 (28)
T 1jmt_B 9 DV-PPPG-FEHITP 20 (28)
T ss_dssp TC-CCTT-CTTSCH
T ss_pred CC-CCCC-ccccCH
Confidence 45 8999 999887
No 20
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=26.39 E-value=16 Score=25.12 Aligned_cols=22 Identities=18% Similarity=0.572 Sum_probs=16.4
Q ss_pred cceEeeccccccccceeeeeeccc
Q 037633 103 STCVCRVPKNLREEKVIEFVHCCW 126 (138)
Q Consensus 103 ttCICRVPk~l~~~~~~eCv~CGC 126 (138)
+.|||++|.. .+..|+|-.|.-
T Consensus 29 vrCiC~~~~~--~~~mi~Cd~C~~ 50 (98)
T 2lv9_A 29 TRCICGFTHD--DGYMICCDKCSV 50 (98)
T ss_dssp CCCTTSCCSC--SSCEEEBTTTCB
T ss_pred EEeECCCccC--CCcEEEcCCCCC
Confidence 6799999852 356899987754
No 21
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=25.87 E-value=32 Score=21.84 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=18.0
Q ss_pred HHHHHHHHhccccCHHHHhhcCCC
Q 037633 60 MELYDFCLDHGHADRNLIAKCKKP 83 (138)
Q Consensus 60 keLY~~~lk~~yaD~~LIaKWKK~ 83 (138)
+.+|+|++++|+++.|-+..-+.+
T Consensus 81 ~~~~~~a~~~~~i~~nP~~~i~~~ 104 (118)
T 2kd1_A 81 RNSLEHAIDLELITKNVAAKTKLP 104 (118)
T ss_dssp HHHHHHHHHTTSCSSCTTTTCCCC
T ss_pred HHHHHHHHHcCCcccCccccccCC
Confidence 468899999998888776655544
No 22
>3epz_A DNA (cytosine-5)-methyltransferase 1; winged helix domain, SH3-like barrel, cell cycle, metal BIND binding,DNA replication; HET: DNA BGC; 2.31A {Homo sapiens}
Probab=24.87 E-value=25 Score=29.22 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=21.2
Q ss_pred eeeecchhhhhhhHHHHHHHHhc
Q 037633 47 IFFYLYHRKKEISMELYDFCLDH 69 (138)
Q Consensus 47 YIydlyyk~k~ISkeLY~~~lk~ 69 (138)
=+|+.||.+--+|+++|++|.++
T Consensus 165 ~~~~~f~eK~~~s~~Vie~L~~~ 187 (268)
T 3epz_A 165 PIFGLMQEKIYISKIVVEFLQSN 187 (268)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 37899999999999999999997
No 23
>3h92_A Uncharacterized ATP-binding protein mjecl15; protein with unknown function, structural genomics, PSI; HET: PG6; 2.20A {Methanocaldococcus jannaschii}
Probab=23.84 E-value=37 Score=24.07 Aligned_cols=16 Identities=13% Similarity=0.200 Sum_probs=13.9
Q ss_pred hhhhHHHHHHHHhccc
Q 037633 56 KEISMELYDFCLDHGH 71 (138)
Q Consensus 56 k~ISkeLY~~~lk~~y 71 (138)
..|++++|.||+++++
T Consensus 52 ~~I~~~i~~~LIk~NI 67 (92)
T 3h92_A 52 SKIKRKIRIFLIKENI 67 (92)
T ss_dssp GGSCHHHHHHHHHTTS
T ss_pred hhccHHHHHHHHHhce
Confidence 3499999999999875
No 24
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=23.72 E-value=34 Score=21.14 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=17.7
Q ss_pred CCCCcce-Eeeccccccccceeeeeecc
Q 037633 99 HNFQSTC-VCRVPKNLREEKVIEFVHCC 125 (138)
Q Consensus 99 ~n~gttC-ICRVPk~l~~~~~~eCv~CG 125 (138)
.+-++.| ||+-|-+ ..+..|+|..|.
T Consensus 3 ~~e~~~C~~C~~~~~-~~~~mI~Cd~C~ 29 (64)
T 1we9_A 3 SGSSGQCGACGESYA-ADEFWICCDLCE 29 (64)
T ss_dssp CSSCCCCSSSCCCCC-SSSCEEECSSSC
T ss_pred CCCCCCCCCCCCccC-CCCCEEEccCCC
Confidence 3457789 9998852 124579998774
No 25
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.66 E-value=27 Score=22.77 Aligned_cols=25 Identities=8% Similarity=0.159 Sum_probs=18.8
Q ss_pred CCCCcceEeeccccccccceeeeeeccc
Q 037633 99 HNFQSTCVCRVPKNLREEKVIEFVHCCW 126 (138)
Q Consensus 99 ~n~gttCICRVPk~l~~~~~~eCv~CGC 126 (138)
.+-..-|||+-|. .+..|+|-+|.|
T Consensus 3 ~~~~~yC~C~~~~---~g~MI~CD~cdC 27 (70)
T 1x4i_A 3 SGSSGYCICNQVS---YGEMVGCDNQDC 27 (70)
T ss_dssp CSCCCCSTTSCCC---CSSEECCSCTTC
T ss_pred CCCCeEEEcCCCC---CCCEeEeCCCCC
Confidence 4556789998773 346899999976
No 26
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=23.45 E-value=41 Score=25.87 Aligned_cols=46 Identities=20% Similarity=0.315 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhCCCCCCCCcce---------------eeeecchhhhh---------h--hHHHHHHHHhcc
Q 037633 25 RKFQAKMTEAENDPHDGKRKSA---------------IFFYLYHRKKE---------I--SMELYDFCLDHG 70 (138)
Q Consensus 25 ~e~~~kmreae~e~~~gkrk~e---------------YIydlyyk~k~---------I--SkeLY~~~lk~~ 70 (138)
.+.+.+.|||.|+..-|..... .|.++.++|=. | |=-|.||||++|
T Consensus 33 s~~E~kVreATnnd~wGPs~~~m~eIa~~T~~~~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~LLeYLl~nG 104 (176)
T 1xgw_A 33 SEIESKVREATNDDPWGPSGQLMGEIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNG 104 (176)
T ss_dssp CHHHHHHHHHTCSCSSCCCHHHHHHHHHHTTCTTTHHHHHHHHHHHHHSSCTTCHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhC
Confidence 4567788899888766644322 45555555411 1 113889999999
No 27
>2pr1_A Uncharacterized N-acetyltransferase YLBP; YIBP protein, coenzyme A, structural GE PSI-2, protein structure initiative; HET: SUC COA; 3.20A {Bacillus subtilis}
Probab=22.67 E-value=53 Score=22.25 Aligned_cols=42 Identities=10% Similarity=0.118 Sum_probs=32.1
Q ss_pred eeeecc----hhhhhhhHHHHHHHHhccc-----cCHHHHhhcCCCccccc
Q 037633 47 IFFYLY----HRKKEISMELYDFCLDHGH-----ADRNLIAKCKKPGYESL 88 (138)
Q Consensus 47 YIydly----yk~k~ISkeLY~~~lk~~y-----aD~~LIaKWKK~GYE~L 88 (138)
||..++ |+++-|-+.|.+++++.|+ ++...++-++|.||+..
T Consensus 84 ~i~~l~V~p~~rg~GiG~~Ll~~~~~~g~~l~~~~~n~a~~fY~k~GF~~~ 134 (163)
T 2pr1_A 84 ELWKLEVLPGYQNRGYGRALVEFAKSFKMPIRTNPRMKSAEFWNKMNFKTV 134 (163)
T ss_dssp EEEEEEECTTSTTSSHHHHHHHHHHTTCSCEEECCCGGGHHHHHHTTCEEC
T ss_pred EEEEEEECHHHcCCCHHHHHHHHHHHcCcEEEEecCchHHHHHHHcCCEEe
Confidence 566776 8888999999999999774 23345777888888754
No 28
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=21.89 E-value=22 Score=23.06 Aligned_cols=27 Identities=30% Similarity=0.575 Sum_probs=19.0
Q ss_pred CCCCCcceEeeccccccccceeeeeecc
Q 037633 98 DHNFQSTCVCRVPKNLREEKVIEFVHCC 125 (138)
Q Consensus 98 ~~n~gttCICRVPk~l~~~~~~eCv~CG 125 (138)
..+.+..|||+.|-.- .+..|+|..|.
T Consensus 6 ~~~~~~yCiC~~~~~~-~~~MI~Cd~C~ 32 (75)
T 3kqi_A 6 MATVPVYCVCRLPYDV-TRFMIECDACK 32 (75)
T ss_dssp TCCCCEETTTTEECCT-TSCEEECTTTC
T ss_pred CCCCeeEEECCCcCCC-CCCEEEcCCCC
Confidence 3456789999988521 24579998775
No 29
>3vej_A Ubiquitin-like protein MDY2; alpha helical, dimerization, homodimerization, protein bindi; 1.23A {Saccharomyces cerevisiae}
Probab=21.09 E-value=27 Score=21.53 Aligned_cols=9 Identities=56% Similarity=1.044 Sum_probs=8.1
Q ss_pred ccchHHHHH
Q 037633 17 WDLIEPTLR 25 (138)
Q Consensus 17 ~e~IeptL~ 25 (138)
|++||.+|+
T Consensus 8 Wd~Ie~lL~ 16 (41)
T 3vej_A 8 WDDIEALLK 16 (41)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999885
No 30
>4dkw_A Large terminase protein; DNA-packaging, small terminase, nuclease FO endonuclease, DNA, DNA-packaging motor, hydrolase; 2.02A {Enterobacteria phage P22}
Probab=20.52 E-value=27 Score=26.82 Aligned_cols=42 Identities=5% Similarity=0.213 Sum_probs=31.0
Q ss_pred ceeeeecchhhhhhhHHHHHHHHhccc----------------cCHHHHhhcCCCccc
Q 037633 45 SAIFFYLYHRKKEISMELYDFCLDHGH----------------ADRNLIAKCKKPGYE 86 (138)
Q Consensus 45 ~eYIydlyyk~k~ISkeLY~~~lk~~y----------------aD~~LIaKWKK~GYE 86 (138)
.-||++-||.++....++.+.+.+-|+ |.+.+|+..+..|+.
T Consensus 53 ~lyi~~E~y~~~~t~~~~a~~i~~~g~~~~~~~~~d~~~~~DsA~~s~i~~lr~~G~~ 110 (211)
T 4dkw_A 53 VFYLARVWKKSENTAVQAWGAVKSWANKIPVAWPHDGHQHEKGGGEQLKTQYADAGFS 110 (211)
T ss_dssp EEEEEEEEEESSCCHHHHHHHHHHHHTTCEEECCCSSCSSSSSCHHHHHHHHHHHTCE
T ss_pred eEEEEEehhhcCCCHHHHHHHHHHhccCCceeeccccceecCCcCHHHHHHHHHCCCc
Confidence 339999999987677777777666553 337788888888863
No 31
>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=20.36 E-value=61 Score=21.10 Aligned_cols=24 Identities=4% Similarity=0.036 Sum_probs=19.8
Q ss_pred HHHHHHHHhccccCHHHHhhcCCC
Q 037633 60 MELYDFCLDHGHADRNLIAKCKKP 83 (138)
Q Consensus 60 keLY~~~lk~~yaD~~LIaKWKK~ 83 (138)
+.+|+|.++.|+++.|-+..-+.+
T Consensus 84 ~~if~~Av~~g~i~~NP~~~v~~~ 107 (118)
T 2kj9_A 84 TAIMRYAVQQKMIRFNPAYDLEGA 107 (118)
T ss_dssp HHHHHHHHHTTSSSSCHHHHCCSC
T ss_pred HHHHHHHHHcCCcccCchHHHHHH
Confidence 579999999999998887766554
No 32
>2hx6_A Ribonuclease, GP61.9; alpha/beta fold, hydrolase; NMR {Enterobacteria phage T4}
Probab=20.31 E-value=50 Score=25.41 Aligned_cols=49 Identities=20% Similarity=0.349 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCCCc----------------ce-eeeecchhhhhhhHHHHHHHHh
Q 037633 20 IEPTLRKFQAKMTEAENDPHDGKRK----------------SA-IFFYLYHRKKEISMELYDFCLD 68 (138)
Q Consensus 20 IeptL~e~~~kmreae~e~~~gkrk----------------~e-YIydlyyk~k~ISkeLY~~~lk 68 (138)
.|....+.++++++|-++..-+.=- .| |||+||.+=+.==+|+.+|+.-
T Consensus 18 fEtEFr~iN~~I~~a~~~~g~~~F~ikYs~HllDr~i~ReIDe~yvf~Lf~ki~~hv~Ei~efl~m 83 (153)
T 2hx6_A 18 FESEFRQINNEIREASKAAGVSSFHLKYSQALLDRAIQREIDETYVFELFHKIKDHVLEVNEFLSM 83 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCEEECCHHHHHHHHHTSTTCCHHHHHHHHGGGGHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHHHhhccHHHHHHHHHHHhhhHHHHHHHHcC
Confidence 3555666677777766553322210 11 9999999988888999999854
No 33
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=20.11 E-value=21 Score=22.47 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=18.1
Q ss_pred CCCCCcceEeeccccccccceeeeeecccc
Q 037633 98 DHNFQSTCVCRVPKNLREEKVIEFVHCCWR 127 (138)
Q Consensus 98 ~~n~gttCICRVPk~l~~~~~~eCv~CGC~ 127 (138)
|.+-...||||-|. .+..|.|-+|.|.
T Consensus 6 d~~e~~~C~C~~~~---~g~mi~CD~cdC~ 32 (60)
T 2vnf_A 6 DPNEPTYCLCHQVS---YGEMIGCDNPDCS 32 (60)
T ss_dssp ---CCEETTTTEEC---CSEEEECSCTTCS
T ss_pred CCCCCCEEECCCcC---CCCEEEeCCCCCC
Confidence 45567889998774 2568999997764
Done!