Query 037637
Match_columns 136
No_of_seqs 129 out of 850
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 02:58:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037637.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037637hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02432 Nodulin-21_like_1 Nodu 100.0 4.9E-38 1.1E-42 247.3 13.7 123 1-124 52-218 (218)
2 cd02433 Nodulin-21_like_2 Nodu 100.0 1E-37 2.2E-42 247.7 13.8 125 1-125 64-234 (234)
3 cd02434 Nodulin-21_like_3 Nodu 100.0 7.2E-36 1.6E-40 235.8 13.7 124 1-124 47-224 (225)
4 cd02435 CCC1 CCC1. CCC1: This 100.0 1.3E-35 2.8E-40 236.6 13.6 124 1-124 65-241 (241)
5 KOG4473 Uncharacterized membra 100.0 1.5E-34 3.3E-39 225.7 11.6 125 1-125 79-247 (247)
6 PF01988 VIT1: VIT family; In 100.0 2.4E-34 5.2E-39 224.7 12.8 123 1-123 46-213 (213)
7 cd02431 Ferritin_CCC1_C CCC1-r 100.0 1.1E-31 2.3E-36 200.7 11.2 105 1-124 45-149 (149)
8 TIGR00267 conserved hypothetic 100.0 6.8E-29 1.5E-33 188.7 12.5 120 1-122 43-168 (169)
9 cd02437 CCC1_like_1 CCC1-relat 99.9 1.8E-27 4E-32 181.3 11.0 123 1-124 48-175 (175)
10 cd02436 Nodulin-21 Nodulin-21. 99.9 1.6E-27 3.4E-32 177.6 9.3 97 1-98 47-151 (152)
11 cd01059 CCC1_like CCC1-related 99.9 1.5E-24 3.2E-29 160.5 10.6 98 1-124 45-143 (143)
12 COG1814 Uncharacterized membra 99.9 2.7E-23 5.9E-28 164.4 11.2 127 1-127 57-228 (229)
13 cd02437 CCC1_like_1 CCC1-relat 88.9 3.6 7.8E-05 31.1 8.1 33 28-61 84-116 (175)
14 PF08006 DUF1700: Protein of u 87.1 9.2 0.0002 28.7 9.3 25 102-126 142-166 (181)
15 TIGR00267 conserved hypothetic 76.4 30 0.00066 26.0 9.6 22 13-34 48-69 (169)
16 COG4709 Predicted membrane pro 73.4 43 0.00092 26.3 12.5 17 45-61 84-100 (195)
17 PF10166 DUF2368: Uncharacteri 64.6 7.5 0.00016 28.6 2.9 57 10-66 12-86 (131)
18 COG3135 BenE Uncharacterized p 64.3 92 0.002 27.0 9.6 65 37-106 295-364 (402)
19 TIGR00843 benE benzoate transp 64.0 73 0.0016 27.6 9.1 64 38-106 297-365 (395)
20 PRK09573 (S)-2,3-di-O-geranylg 56.5 1E+02 0.0022 24.6 11.0 25 99-123 253-277 (279)
21 TIGR02359 thiW thiW protein. L 53.0 97 0.0021 23.4 9.6 72 41-124 47-118 (160)
22 TIGR02185 Trep_Strep conserved 50.6 91 0.002 23.8 6.9 33 36-68 101-133 (189)
23 PF14257 DUF4349: Domain of un 47.8 79 0.0017 25.0 6.4 12 54-65 240-251 (262)
24 COG2056 Predicted permease [Ge 47.7 77 0.0017 27.6 6.6 58 72-130 263-320 (444)
25 PF13829 DUF4191: Domain of un 47.5 71 0.0015 25.6 6.0 25 88-113 42-66 (224)
26 PF03594 BenE: Benzoate membra 46.7 1.9E+02 0.0042 25.0 9.7 66 38-108 281-351 (378)
27 COG3086 RseC Positive regulato 45.0 55 0.0012 24.7 4.7 27 29-65 65-91 (150)
28 PF02532 PsbI: Photosystem II 40.9 45 0.00097 19.2 2.9 26 73-98 7-32 (36)
29 PF13807 GNVR: G-rich domain o 40.3 1E+02 0.0022 20.0 5.4 24 40-64 55-78 (82)
30 PRK14853 nhaA pH-dependent sod 40.3 94 0.002 27.2 6.1 32 35-67 88-119 (423)
31 KOG4783 Uncharacterized conser 39.4 1.4E+02 0.0029 21.1 7.0 69 34-102 16-98 (102)
32 PRK10457 hypothetical protein; 36.3 1.3E+02 0.0029 20.1 6.3 39 87-125 13-51 (82)
33 PRK10404 hypothetical protein; 35.5 41 0.00088 23.5 2.6 23 96-125 77-99 (101)
34 PF11151 DUF2929: Protein of u 35.0 1.1E+02 0.0025 19.0 4.7 37 73-113 7-45 (57)
35 PF14015 DUF4231: Protein of u 34.6 1.4E+02 0.0031 20.0 5.6 20 47-66 24-43 (112)
36 COG0586 DedA Uncharacterized m 34.5 1.3E+02 0.0029 23.1 5.7 39 88-126 45-83 (208)
37 TIGR00997 ispZ intracellular s 34.5 2E+02 0.0043 22.1 6.5 10 57-66 7-16 (178)
38 COG0382 UbiA 4-hydroxybenzoate 33.3 2.1E+02 0.0045 22.9 6.8 14 12-25 64-77 (289)
39 PRK10132 hypothetical protein; 33.2 42 0.00092 23.7 2.4 20 39-58 84-104 (108)
40 PF03547 Mem_trans: Membrane t 33.0 2.7E+02 0.0058 22.8 7.6 75 47-121 249-331 (385)
41 PRK12884 ubiA prenyltransferas 32.5 2.5E+02 0.0055 22.2 11.0 24 99-122 254-277 (279)
42 PF05957 DUF883: Bacterial pro 32.0 42 0.00092 22.5 2.2 13 113-125 80-92 (94)
43 PF06081 DUF939: Bacterial pro 31.6 1.7E+02 0.0038 21.1 5.6 34 35-68 41-74 (141)
44 PF01062 Bestrophin: Bestrophi 30.6 2.7E+02 0.0059 22.0 7.3 55 35-91 208-262 (293)
45 COG2733 Predicted membrane pro 30.6 2.3E+02 0.005 24.8 6.8 54 77-132 13-70 (415)
46 COG4575 ElaB Uncharacterized c 30.6 55 0.0012 23.2 2.6 24 96-126 80-103 (104)
47 COG0728 MviN Uncharacterized m 30.2 4.1E+02 0.0088 23.9 10.9 89 35-127 382-475 (518)
48 PRK11602 cysW sulfate/thiosulf 29.8 2.8E+02 0.0061 21.9 8.7 24 41-64 19-42 (283)
49 PHA00094 VI minor coat protein 29.5 1.9E+02 0.0042 20.7 5.3 41 84-124 19-59 (112)
50 PF04246 RseC_MucC: Positive r 29.5 1.4E+02 0.0031 21.1 4.8 21 39-66 65-85 (135)
51 PF06379 RhaT: L-rhamnose-prot 29.4 3.6E+02 0.0077 23.1 7.7 83 39-121 98-193 (344)
52 COG1007 NuoN NADH:ubiquinone o 29.3 94 0.002 27.6 4.4 27 38-64 359-385 (475)
53 PF11712 Vma12: Endoplasmic re 29.2 2.2E+02 0.0048 20.5 6.7 23 71-93 79-101 (142)
54 PF06380 DUF1072: Protein of u 29.1 1E+02 0.0022 18.0 3.2 24 71-94 4-27 (39)
55 PF12301 CD99L2: CD99 antigen 29.1 43 0.00094 25.6 2.0 25 75-99 117-141 (169)
56 PF06826 Asp-Al_Ex: Predicted 29.0 2.5E+02 0.0055 21.1 7.6 47 87-133 67-114 (169)
57 PF11361 DUF3159: Protein of u 28.8 1.8E+02 0.0039 22.5 5.5 68 56-125 10-77 (187)
58 PF12344 UvrB: Ultra-violet re 28.8 69 0.0015 19.2 2.5 30 13-42 10-42 (44)
59 TIGR01594 holin_lambda phage h 27.9 2.2E+02 0.0047 20.0 6.4 35 87-121 33-67 (107)
60 PF01024 Colicin: Colicin pore 27.6 1.6E+02 0.0035 23.0 5.0 21 72-92 136-156 (187)
61 PF11283 DUF3084: Protein of u 27.0 1.5E+02 0.0032 20.0 4.1 29 98-126 39-67 (79)
62 PF04956 TrbC: TrbC/VIRB2 fami 26.5 2E+02 0.0043 19.0 6.8 31 91-122 68-98 (99)
63 COG4129 Predicted membrane pro 26.5 3.9E+02 0.0085 22.5 9.5 38 35-72 47-84 (332)
64 KOG4686 Predicted sugar transp 26.5 4.3E+02 0.0093 22.9 7.7 77 38-117 352-434 (459)
65 PF13770 DUF4169: Domain of un 26.0 75 0.0016 19.9 2.4 20 11-30 32-51 (55)
66 PF05106 Phage_holin_3: Phage 25.9 2.3E+02 0.0049 19.5 6.7 34 88-121 32-65 (100)
67 PF10710 DUF2512: Protein of u 25.3 2.7E+02 0.0059 20.3 5.7 22 105-126 61-82 (136)
68 PF11166 DUF2951: Protein of u 25.1 1.4E+02 0.0031 20.9 3.9 22 73-94 75-96 (98)
69 COG0475 KefB Kef-type K+ trans 25.0 4.3E+02 0.0093 22.4 9.3 83 1-96 243-325 (397)
70 KOG3088 Secretory carrier memb 24.5 34 0.00075 28.6 0.8 12 11-22 63-74 (313)
71 PF08690 GET2: GET complex sub 23.6 61 0.0013 26.9 2.1 13 16-28 4-16 (302)
72 PRK15050 2-aminoethylphosphona 22.7 3.8E+02 0.0083 21.2 6.6 24 41-64 24-47 (296)
73 PF03699 UPF0182: Uncharacteri 22.3 2E+02 0.0042 27.2 5.3 51 76-126 172-222 (774)
74 PRK09561 nhaA pH-dependent sod 21.8 4E+02 0.0086 23.1 6.7 31 36-67 86-116 (388)
75 COG5393 Predicted membrane pro 21.8 3.3E+02 0.0072 20.0 8.1 64 38-102 44-110 (131)
76 PRK14855 nhaA pH-dependent sod 21.5 2.2E+02 0.0048 24.9 5.2 31 36-67 90-120 (423)
77 PRK14856 nhaA pH-dependent sod 21.5 2.1E+02 0.0045 25.2 5.1 31 36-67 95-125 (438)
78 PRK03612 spermidine synthase; 21.5 5.7E+02 0.012 22.6 8.0 18 40-57 12-29 (521)
79 PF11241 DUF3043: Protein of u 21.4 3.8E+02 0.0083 20.5 7.5 26 41-66 69-94 (170)
80 PF04279 IspA: Intracellular s 21.3 3.7E+02 0.008 20.3 6.8 10 57-66 7-16 (176)
81 PRK00259 intracellular septati 20.8 3.9E+02 0.0084 20.4 6.8 10 57-66 7-16 (179)
82 TIGR01666 YCCS hypothetical me 20.8 6.9E+02 0.015 23.3 10.1 50 41-94 56-105 (704)
83 PF11808 DUF3329: Domain of un 20.8 2.2E+02 0.0047 19.0 4.1 17 76-92 11-27 (90)
84 PRK11469 hypothetical protein; 20.4 4E+02 0.0086 20.3 6.7 20 77-96 140-159 (188)
No 1
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=100.00 E-value=4.9e-38 Score=247.28 Aligned_cols=123 Identities=21% Similarity=0.297 Sum_probs=115.0
Q ss_pred CceecchhhhhhhhhHHHHHHHHHHHHHhh--------------------------------------------cCCCCC
Q 037637 1 MRIATSVLVSVHTQVDTINFQAERDFKMER--------------------------------------------SVDQRT 36 (136)
Q Consensus 1 ~SMa~GeYlS~~sq~d~~~ae~~re~~e~~--------------------------------------------lGi~~~ 36 (136)
+|||+|||+|+|||||.++++++||+||++ +|++++
T Consensus 52 ~SMa~G~yls~~sq~d~~~~~~~~e~~~i~~~p~~e~~el~~~~~~~G~~~~~a~~~a~~l~~~~~~~~~~~~e~g~~~~ 131 (218)
T cd02432 52 LSMAAGEYVSVSSQRDTEKADIAKERRELAEDPEAELEELADIYEERGLSPELARQVADELMAKDALEAHARDELGITEG 131 (218)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcChHHHHHHHhcCCCCC
Confidence 699999999999999999999999998652 677777
Q ss_pred CcccHHHHHHHHHHHHHhhhhhhhHHHhcccchhhHHHHHHHHHHHHHHHHHHHhHHhcCCCchhHHHHHHHHHHHHHHH
Q 037637 37 AVPSAIQIAVASSLAFLFWGKVPMLAAGFIKDHHLRSSIALVAAILSMVMLGIAGAALGKVPTMRSCVRVVVGGFVAVPI 116 (136)
Q Consensus 37 ~~~~P~~aal~s~~sF~~Gg~vPllp~~~~~~~~~~~~~s~~~~~~aL~~lG~~~a~~s~~~~~rs~~~~l~~G~~aa~v 116 (136)
+.+|||++|++||+||++|+++|++||+|. +...+++.+++++.++|+++|+++++++++|++|+++||+++|++|+++
T Consensus 132 ~~~~p~~aal~s~~sf~lg~liPllpy~~~-~~~~~~~~s~~~~~~aL~~~G~~~a~~~~~~~~~~~l~~~~iG~~aa~v 210 (218)
T cd02432 132 EYANPWQAALASAISFSVGALLPLLAILLA-PAAWKVPVTIIATLLALALTGYVSARLGGASVLRAILRNVIWGALAMAL 210 (218)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999999999999987 5567799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 037637 117 RWGKVKII 124 (136)
Q Consensus 117 ty~iG~l~ 124 (136)
||++|+++
T Consensus 211 ty~iG~l~ 218 (218)
T cd02432 211 TYLIGRLF 218 (218)
T ss_pred HHHHHhhC
Confidence 99999875
No 2
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=100.00 E-value=1e-37 Score=247.74 Aligned_cols=125 Identities=17% Similarity=0.102 Sum_probs=116.7
Q ss_pred CceecchhhhhhhhhHHHHHHHHHHHHHhh----------------------------------------------cCCC
Q 037637 1 MRIATSVLVSVHTQVDTINFQAERDFKMER----------------------------------------------SVDQ 34 (136)
Q Consensus 1 ~SMa~GeYlS~~sq~d~~~ae~~re~~e~~----------------------------------------------lGi~ 34 (136)
+|||+|||+|+|||+|.++++++||+||++ +|++
T Consensus 64 ~SMa~GeYls~kse~d~~~~~~~re~~~i~~~p~~e~~el~~iy~~~G~~~~~a~~~~~~l~~~~~~~~~~~~~~e~g~~ 143 (234)
T cd02433 64 LSMAAGEYVSVTSQRELLEASIPDERRELRKHPLEEAAELALIYRAKGLDEEEAKRVASQLMNDPEQALDTLAREELGLD 143 (234)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCcchhHHHHHHHhcCCC
Confidence 699999999999999999999999998652 7788
Q ss_pred CCCcccHHHHHHHHHHHHHhhhhhhhHHHhcccchhhHHHHHHHHHHHHHHHHHHHhHHhcCCCchhHHHHHHHHHHHHH
Q 037637 35 RTAVPSAIQIAVASSLAFLFWGKVPMLAAGFIKDHHLRSSIALVAAILSMVMLGIAGAALGKVPTMRSCVRVVVGGFVAV 114 (136)
Q Consensus 35 ~~~~~~P~~aal~s~~sF~~Gg~vPllp~~~~~~~~~~~~~s~~~~~~aL~~lG~~~a~~s~~~~~rs~~~~l~~G~~aa 114 (136)
+++.+|||++|++||+||++|+++||+||++..+...++.++++++.++|+++|+++++++++|+||+++||+++|++|+
T Consensus 144 ~~~~~~P~~aAl~sflsF~ig~liPLLPf~~~~~~~~~~~~s~~~~~~~L~~lG~~~a~~s~~~~~~~~l~~~~~G~~aa 223 (234)
T cd02433 144 PELLGNPWSAAVSSFLLFALGALIPVLPFLFGMSGLAALVLSVLLVGLALLATGAVTGLLSGRSPGISALRQLAIGGGAA 223 (234)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999987455578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 037637 115 PIRWGKVKIIE 125 (136)
Q Consensus 115 ~vty~iG~l~~ 125 (136)
+++|++|++|+
T Consensus 224 ~vsy~iG~l~~ 234 (234)
T cd02433 224 AVTYLLGLLFG 234 (234)
T ss_pred HHHHHHHHHcC
Confidence 99999999874
No 3
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=100.00 E-value=7.2e-36 Score=235.80 Aligned_cols=124 Identities=15% Similarity=0.173 Sum_probs=112.7
Q ss_pred CceecchhhhhhhhhHHHHHHHHHHHHHhh----------------------------------------------cCCC
Q 037637 1 MRIATSVLVSVHTQVDTINFQAERDFKMER----------------------------------------------SVDQ 34 (136)
Q Consensus 1 ~SMa~GeYlS~~sq~d~~~ae~~re~~e~~----------------------------------------------lGi~ 34 (136)
+|||.|||+|+|||+|.+++|++||+||++ +|++
T Consensus 47 ~SMa~GeYls~kse~d~~~~e~~re~~~i~~~pe~E~~el~~iy~~kG~~~~~a~~v~~~l~~~~~~~~~~m~~~elg~~ 126 (225)
T cd02434 47 ISMAAGEYVSTKAERDFLHSEKKREEWEIENYPEGEKSEMVEIYSLKGLSEEVADQVVELLSKYRKLFVDIMMTEELGLI 126 (225)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCchhhHHHHHHhhccCC
Confidence 599999999999999999999999998752 6777
Q ss_pred CCC-cccHHHHHHHHHHHHHhhhhhhhHHHhcccc------hhhHHHHHHHH-HHHHHHHHHHHhHHhcCCCchhHHHHH
Q 037637 35 RTA-VPSAIQIAVASSLAFLFWGKVPMLAAGFIKD------HHLRSSIALVA-AILSMVMLGIAGAALGKVPTMRSCVRV 106 (136)
Q Consensus 35 ~~~-~~~P~~aal~s~~sF~~Gg~vPllp~~~~~~------~~~~~~~s~~~-~~~aL~~lG~~~a~~s~~~~~rs~~~~ 106 (136)
+++ ..|||++|++||+||.+|+++||+||++..+ ....+.+++++ +.++|+++|++|++++++||+|+++||
T Consensus 127 ~~~~~~~P~~aAl~sflsf~~ggliPLlp~~~~~~~~~~~~~~~~~~~s~~~~~~~~L~~~G~~~~~~~~~~~~~~~l~~ 206 (225)
T cd02434 127 PDDELPSPLKTALVTFLSFLVFGIIPLLPYLLGLYYYSQKEIDSVFALSILIFVAFTLFLLGSFKSKLYNGKWIISGIIM 206 (225)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 766 5799999999999999999999999998632 14567888888 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 037637 107 VVGGFVAVPIRWGKVKII 124 (136)
Q Consensus 107 l~~G~~aa~vty~iG~l~ 124 (136)
+++|++|+++||++|+++
T Consensus 207 ~~~G~~aa~~ty~iG~l~ 224 (225)
T cd02434 207 LINGAASGGVSFFLGVLF 224 (225)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999999886
No 4
>cd02435 CCC1 CCC1. CCC1: This domain is present in the CCC1, an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants.
Probab=100.00 E-value=1.3e-35 Score=236.57 Aligned_cols=124 Identities=15% Similarity=0.222 Sum_probs=114.6
Q ss_pred CceecchhhhhhhhhHHHHHHHHHHHHHh------------------------------------------------hcC
Q 037637 1 MRIATSVLVSVHTQVDTINFQAERDFKME------------------------------------------------RSV 32 (136)
Q Consensus 1 ~SMa~GeYlS~~sq~d~~~ae~~re~~e~------------------------------------------------~lG 32 (136)
+|||+|||+|+|||+|.++++++||+||+ |+|
T Consensus 65 ~SMa~GeYlS~~sq~d~~~~~~~~e~~~i~~~~~~E~~e~l~~~~~~~G~~~~~~~~~~~~~l~~~~~~~~~~~~~~elg 144 (241)
T cd02435 65 ISMGLGGYLAAKSERDHYQREHKRKQEAVEASPSTEQEEIILYDLVQYGLVPLETAASTVTDLRKNPQALVDFLMRFGLG 144 (241)
T ss_pred HHHHHhhHHHhhhhHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhChhHHHHHHHHHhhC
Confidence 69999999999999999999999988753 167
Q ss_pred CCCCCcccHHHHHHHHHHHHHhhhhhhhHHHhcccchhhHHHHHHHHHHHHHHHHHHHhHHhcCCCch-----hHHHHHH
Q 037637 33 DQRTAVPSAIQIAVASSLAFLFWGKVPMLAAGFIKDHHLRSSIALVAAILSMVMLGIAGAALGKVPTM-----RSCVRVV 107 (136)
Q Consensus 33 i~~~~~~~P~~aal~s~~sF~~Gg~vPllp~~~~~~~~~~~~~s~~~~~~aL~~lG~~~a~~s~~~~~-----rs~~~~l 107 (136)
+++++..|||++|++||+||++|+++|++||++..+...++.++++++.++|+++|++++++++++++ |+++||+
T Consensus 145 ~~~~~~~~p~~aAl~s~lsf~lG~liPLlPy~~~~~~~~a~~~si~l~~~aL~ilG~~~s~~s~~~~~~~~~~~s~lrml 224 (241)
T cd02435 145 LEEPDTSRALISALTIGLSYFIGGLIPLLPYFFVSTVGEALLLSVIVTLVALFVFGYVKTWFTGGWGGAGGGVWGAVQML 224 (241)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHH
Confidence 77777789999999999999999999999999875566899999999999999999999999999998 9999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 037637 108 VGGFVAVPIRWGKVKII 124 (136)
Q Consensus 108 ~~G~~aa~vty~iG~l~ 124 (136)
++|++|+++||+++++|
T Consensus 225 ~~G~~aa~vty~l~~~~ 241 (241)
T cd02435 225 VVGGLAAGAAWGLVKLL 241 (241)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999999875
No 5
>KOG4473 consensus Uncharacterized membrane protein [Function unknown]
Probab=100.00 E-value=1.5e-34 Score=225.71 Aligned_cols=125 Identities=36% Similarity=0.499 Sum_probs=118.4
Q ss_pred CceecchhhhhhhhhHHHHHHHHHHHHHh--------------------------------------------hcCCCCC
Q 037637 1 MRIATSVLVSVHTQVDTINFQAERDFKME--------------------------------------------RSVDQRT 36 (136)
Q Consensus 1 ~SMa~GeYlS~~sq~d~~~ae~~re~~e~--------------------------------------------~lGi~~~ 36 (136)
||||+|||+|+|||+|+|.+|+++||+|. |+|++++
T Consensus 79 ~SMaiGeyvsv~Sq~D~e~ae~q~erre~~a~~~~e~~E~~~Il~g~~~~E~lpvi~alq~~p~~~ldf~~R~elGl~~p 158 (247)
T KOG4473|consen 79 CSMAIGEYVSVKSQYDIEVAEVQMERREFYANSNLENDEIADILLGEEEKEELPVIKALQRTPELMLDFIIRYELGLDEP 158 (247)
T ss_pred HHHhhccceeecchhhHHHHHHHHHHHHhhccchhhhHHHHHHhcCCCchhccchhHHhhhChHHHHHHHHHhhcccCCC
Confidence 79999999999999999999888888542 2889999
Q ss_pred CcccHHHHHHHHHHHHHhhhhhhhHHHhcccchhhHHHHHHHHHHHHHHHHHHHhHHhcCCCchhHHHHHHHHHHHHHHH
Q 037637 37 AVPSAIQIAVASSLAFLFWGKVPMLAAGFIKDHHLRSSIALVAAILSMVMLGIAGAALGKVPTMRSCVRVVVGGFVAVPI 116 (136)
Q Consensus 37 ~~~~P~~aal~s~~sF~~Gg~vPllp~~~~~~~~~~~~~s~~~~~~aL~~lG~~~a~~s~~~~~rs~~~~l~~G~~aa~v 116 (136)
+..+|.|+|++++++|.+||++||+||+|.+++..++.++++++.++|+.+|++++.+++.++.|+++|++++|++||++
T Consensus 159 ~~~~p~qaA~asa~afslGg~vPLl~~~fi~~~~~~~v~~vv~~~~aL~~fG~~ga~lg~ak~vrs~~r~vv~G~lAmaa 238 (247)
T KOG4473|consen 159 AENRPLQAAAASALAFSLGGIVPLLPAAFVKDYKVRIVVSVVATTFALFMFGYVGAHLGKAKVVRSSVRVVVGGWLAMAA 238 (247)
T ss_pred CCCchHHHHHHHHHHHHhccHHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 037637 117 RWGKVKIIE 125 (136)
Q Consensus 117 ty~iG~l~~ 125 (136)
||+++++++
T Consensus 239 tf~l~Klig 247 (247)
T KOG4473|consen 239 TFGLTKLIG 247 (247)
T ss_pred HHHHHHhcC
Confidence 999999874
No 6
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=100.00 E-value=2.4e-34 Score=224.71 Aligned_cols=123 Identities=20% Similarity=0.222 Sum_probs=113.7
Q ss_pred CceecchhhhhhhhhHHHHHHHHHHHHHhh---------------------------------------------cCCCC
Q 037637 1 MRIATSVLVSVHTQVDTINFQAERDFKMER---------------------------------------------SVDQR 35 (136)
Q Consensus 1 ~SMa~GeYlS~~sq~d~~~ae~~re~~e~~---------------------------------------------lGi~~ 35 (136)
+|||+|+|+|+|+|||++++|++||+||++ +|+++
T Consensus 46 ~SMa~G~yls~~se~~~~~~e~~re~~e~~~~pe~e~~el~~iy~~~Gl~~~~a~~i~~~l~~~~~~~~~m~~ee~g~~~ 125 (213)
T PF01988_consen 46 ISMAVGEYLSVKSERDLYEAEREREEWELENNPEEEKEELVEIYRAKGLSEEDAEEIAEELSKDKDALDFMMREELGLSP 125 (213)
T ss_pred HHHHHHHHHHHHhhhhHHHHHhHHHHHHHHhChHhHHHHHHHHHHHCCCCHHHHHHHHHHHHhCchHHHHHHhhhccCCc
Confidence 599999999999999999999999998753 56677
Q ss_pred CCcccHHHHHHHHHHHHHhhhhhhhHHHhcccchhhHHHHHHHHHHHHHHHHHHHhHHhcCCCchhHHHHHHHHHHHHHH
Q 037637 36 TAVPSAIQIAVASSLAFLFWGKVPMLAAGFIKDHHLRSSIALVAAILSMVMLGIAGAALGKVPTMRSCVRVVVGGFVAVP 115 (136)
Q Consensus 36 ~~~~~P~~aal~s~~sF~~Gg~vPllp~~~~~~~~~~~~~s~~~~~~aL~~lG~~~a~~s~~~~~rs~~~~l~~G~~aa~ 115 (136)
++..|||++|+++|+||++|+++|++||++......++.++++++.++|+++|++|++++++|++|+++||+++|+++++
T Consensus 126 ~~~~~p~~~al~~~~sf~lg~liPllp~~~~~~~~~a~~~s~~~~~~~L~~~G~~~a~~~~~~~~~~~l~~~~~G~~aa~ 205 (213)
T PF01988_consen 126 EEEESPWKAALATFLSFILGGLIPLLPYFFLPSVSEAFIASIAVTILALFILGYFKARISGQSWWRSGLEMLLIGLIAAA 205 (213)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999999999999983124789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 037637 116 IRWGKVKI 123 (136)
Q Consensus 116 vty~iG~l 123 (136)
++|++|+|
T Consensus 206 ~~~~iG~L 213 (213)
T PF01988_consen 206 VTYLIGYL 213 (213)
T ss_pred HHHHHhhC
Confidence 99999975
No 7
>cd02431 Ferritin_CCC1_C CCC1-related domain of ferritin. Ferritin_CCC1_like_C: The proteins of this family contain two domains. This is the C-terminal domain that is closely related to the CCC1, a vacuole transmembrane protein functioning as an iron and manganese transporter. The N-terminal domain is similar to ferritin-like diiron-carboxylate proteins, which are involved in a variety of iron ion related functions, such as iron storage and regulation, mono-oxygenation, and reactive radical production. This family may be unique to certain bacteria and archaea.
Probab=99.97 E-value=1.1e-31 Score=200.66 Aligned_cols=105 Identities=10% Similarity=0.173 Sum_probs=98.8
Q ss_pred CceecchhhhhhhhhHHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHhhhhhhhHHHhcccchhhHHHHHHHHH
Q 037637 1 MRIATSVLVSVHTQVDTINFQAERDFKMERSVDQRTAVPSAIQIAVASSLAFLFWGKVPMLAAGFIKDHHLRSSIALVAA 80 (136)
Q Consensus 1 ~SMa~GeYlS~~sq~d~~~ae~~re~~e~~lGi~~~~~~~P~~aal~s~~sF~~Gg~vPllp~~~~~~~~~~~~~s~~~~ 80 (136)
+||+.|||+|+|||||.+++ ||||+|++|++||.+|+++|++||++..+...++.++++++
T Consensus 45 ~SMa~G~YlS~kse~d~~~~-------------------~p~~~al~s~~sf~~g~~iPllp~~~~~~~~~a~~~s~~~~ 105 (149)
T cd02431 45 LSMAIGAYLSTKSESGVKES-------------------NPVKSALYTGIAYIIGVVIPILPYLLLSSVYLALALSVTLA 105 (149)
T ss_pred HHHHHHHHHHHhhHHhHHhc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence 59999999999999997654 89999999999999999999999998844468999999999
Q ss_pred HHHHHHHHHHhHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 037637 81 ILSMVMLGIAGAALGKVPTMRSCVRVVVGGFVAVPIRWGKVKII 124 (136)
Q Consensus 81 ~~aL~~lG~~~a~~s~~~~~rs~~~~l~~G~~aa~vty~iG~l~ 124 (136)
.++|+++|+++++++++|++|+++||+++|.+++.++|++|+++
T Consensus 106 ~~~L~~~G~~~~~~s~~~~~~~~l~~~~~G~~aa~~t~~iG~l~ 149 (149)
T cd02431 106 VLAILIFNFYISVASGISFRKKFIEMAGLALGAAFISFLLGYLL 149 (149)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999875
No 8
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=99.96 E-value=6.8e-29 Score=188.67 Aligned_cols=120 Identities=12% Similarity=0.148 Sum_probs=103.7
Q ss_pred CceecchhhhhhhhhHHHHHHHHHHHHHhhcCCCCC------CcccHHHHHHHHHHHHHhhhhhhhHHHhcccchhhHHH
Q 037637 1 MRIATSVLVSVHTQVDTINFQAERDFKMERSVDQRT------AVPSAIQIAVASSLAFLFWGKVPMLAAGFIKDHHLRSS 74 (136)
Q Consensus 1 ~SMa~GeYlS~~sq~d~~~ae~~re~~e~~lGi~~~------~~~~P~~aal~s~~sF~~Gg~vPllp~~~~~~~~~~~~ 74 (136)
+||+.|||++.|+|+|.|+.|.+++. ..+.|+.++ ...|||++|+++++||++|+++|++||++. |...++.
T Consensus 43 ~Sma~GeYv~e~ae~~~e~~ele~~~-~~~~g~~~~~~~~~~~~~~p~~aAl~sgls~~~g~liPllp~~~~-~~~~a~~ 120 (169)
T TIGR00267 43 MSNAFGAFTAERAEEEREMRELEKSM-LMDEGKLDDTIIYKQARRRVYMSGFIDGFSTFMGSFVPVLPFLVF-DRMTATI 120 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHc-chhHHHH
Confidence 59999999998888886665554333 233454433 346999999999999999999999999984 7778999
Q ss_pred HHHHHHHHHHHHHHHHhHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 037637 75 IALVAAILSMVMLGIAGAALGKVPTMRSCVRVVVGGFVAVPIRWGKVK 122 (136)
Q Consensus 75 ~s~~~~~~aL~~lG~~~a~~s~~~~~rs~~~~l~~G~~aa~vty~iG~ 122 (136)
++++++.++|+++|+++++++++|++|+++||+++|.+++++||++|.
T Consensus 121 ~s~~~~~~~L~ilG~~~a~~s~~~~~~s~lr~~~~G~~aa~it~~iG~ 168 (169)
T TIGR00267 121 VTVLLTLIALLVLGVYLGRISRENILISSLKMVVIGLLVAVVSLLIEG 168 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999974
No 9
>cd02437 CCC1_like_1 CCC1-related protein family. CCC1_like_1: This is a protein family closely related to CCC1, a family of proteins involved in iron and manganese transport. Yeast CCC1 is a vacuole transmembrane protein responsible for the iron and manganese accumulation in vacuole.
Probab=99.95 E-value=1.8e-27 Score=181.27 Aligned_cols=123 Identities=13% Similarity=0.146 Sum_probs=99.2
Q ss_pred CceecchhhhhhhhhHHHHHHHHHH---HHHhh--cCCCCCCcccHHHHHHHHHHHHHhhhhhhhHHHhcccchhhHHHH
Q 037637 1 MRIATSVLVSVHTQVDTINFQAERD---FKMER--SVDQRTAVPSAIQIAVASSLAFLFWGKVPMLAAGFIKDHHLRSSI 75 (136)
Q Consensus 1 ~SMa~GeYlS~~sq~d~~~ae~~re---~~e~~--lGi~~~~~~~P~~aal~s~~sF~~Gg~vPllp~~~~~~~~~~~~~ 75 (136)
+||+.|||+|.|+|+.-++.|.++. .+|.+ ...+++...|||++++.+++||++|+++|++||++. |...++.+
T Consensus 48 ~Sma~g~yvs~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~al~sgls~~~G~llPLlp~~~~-~~~~a~~~ 126 (175)
T cd02437 48 ISNGLGAAVAEEGSLRGMLEEKEKILLRLEQMLTSTREELAIRKADLPSGLIQGISTTLGGLLPLLPFLPF-DLWLAAGI 126 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHhccccChHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHH
Confidence 6999999999997632222111110 01111 112233446899999999999999999999999976 56689999
Q ss_pred HHHHHHHHHHHHHHHhHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 037637 76 ALVAAILSMVMLGIAGAALGKVPTMRSCVRVVVGGFVAVPIRWGKVKII 124 (136)
Q Consensus 76 s~~~~~~aL~~lG~~~a~~s~~~~~rs~~~~l~~G~~aa~vty~iG~l~ 124 (136)
+++++.++|+++|+++++++++|++|+++|++.+|+++++++|.+|++|
T Consensus 127 si~~~~~~L~~~G~~~~~~~~~~~~~~~~r~~~~g~la~~~t~~vg~l~ 175 (175)
T cd02437 127 AVAIVLAILFILGLVIGKISKINVAISFVWAVGMVITGISLVFSVGKLF 175 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999875
No 10
>cd02436 Nodulin-21 Nodulin-21. Nodulin-21: This is a family of proteins that may be unique to certain plants. The family member in soybean is found to be nodule-specific and is abundant during nodule development. The proteins of this family thus may play a role in symbiotic nitrogen fixation.
Probab=99.95 E-value=1.6e-27 Score=177.63 Aligned_cols=97 Identities=21% Similarity=0.125 Sum_probs=89.7
Q ss_pred CceecchhhhhhhhhHHHHHHHHHHHHHh--------hcCCCCCCcccHHHHHHHHHHHHHhhhhhhhHHHhcccchhhH
Q 037637 1 MRIATSVLVSVHTQVDTINFQAERDFKME--------RSVDQRTAVPSAIQIAVASSLAFLFWGKVPMLAAGFIKDHHLR 72 (136)
Q Consensus 1 ~SMa~GeYlS~~sq~d~~~ae~~re~~e~--------~lGi~~~~~~~P~~aal~s~~sF~~Gg~vPllp~~~~~~~~~~ 72 (136)
+||+.|||+|++||+|.|+++++||++|+ |+|+++++..||||+|+.|++||.+|+++|+++++|..|..++
T Consensus 47 ~SMa~GeYvSv~sq~d~e~a~i~~e~~el~rGl~~~lelgi~~~~~~~P~qAA~aSa~sF~~Ga~lPll~~~fl~p~~~~ 126 (152)
T cd02436 47 CPMAIGEFVRVYRQYRRPRAARCLRGRNRARGPAPDSEPEGLRRQAPSPSSAATASALSFAAGALFPLLAAWFVASYASR 126 (152)
T ss_pred HHHhhcchhhcccccchHHHHHHHHHHHhhcCCChhhhcCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 69999999999999999999999999875 5778888889999999999999999999999999955577778
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhcCCC
Q 037637 73 SSIALVAAILSMVMLGIAGAALGKVP 98 (136)
Q Consensus 73 ~~~s~~~~~~aL~~lG~~~a~~s~~~ 98 (136)
.++++.+.++|+++|++.+++++.+
T Consensus 127 -~~~~~~~~~aL~~~G~~~A~~g~a~ 151 (152)
T cd02436 127 -RVLPPQSSAPAAPPGRSPATVTASS 151 (152)
T ss_pred -hHHHHHHHHHHHHHhHHHHHhcCCC
Confidence 8999999999999999999999876
No 11
>cd01059 CCC1_like CCC1-related family of proteins. CCC1_like: This protein family includes the proteins related to CCC1, a yeast vacuole transmembrane protein responsible for the iron and manganese transport from the cytosol into vacuole. It also includes the proteins similar to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation.
Probab=99.92 E-value=1.5e-24 Score=160.55 Aligned_cols=98 Identities=28% Similarity=0.446 Sum_probs=92.5
Q ss_pred CceecchhhhhhhhhHHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHhhhhhhhHHHhcccchhhHHHHHHHH-
Q 037637 1 MRIATSVLVSVHTQVDTINFQAERDFKMERSVDQRTAVPSAIQIAVASSLAFLFWGKVPMLAAGFIKDHHLRSSIALVA- 79 (136)
Q Consensus 1 ~SMa~GeYlS~~sq~d~~~ae~~re~~e~~lGi~~~~~~~P~~aal~s~~sF~~Gg~vPllp~~~~~~~~~~~~~s~~~- 79 (136)
+||+.|||+|+|+|+| ++|+++++||.+|+++|++||++..+.+.++..++++
T Consensus 45 ~Sma~g~yls~~~e~~--------------------------~~al~~~~s~~~g~lipllp~~~~~~~~~a~~~si~~~ 98 (143)
T cd01059 45 ISMAAGEYVSVKSQRD--------------------------KAALASGLSFILGGLLPLLPYLLLPAGSLALAVSVALV 98 (143)
T ss_pred HHHHHHHHHHHhhHHh--------------------------HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 5999999999999999 9999999999999999999999884446788999998
Q ss_pred HHHHHHHHHHHhHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 037637 80 AILSMVMLGIAGAALGKVPTMRSCVRVVVGGFVAVPIRWGKVKII 124 (136)
Q Consensus 80 ~~~aL~~lG~~~a~~s~~~~~rs~~~~l~~G~~aa~vty~iG~l~ 124 (136)
+.++|+++|+.|+|.+++||+|+++||+.+|.+++.++|.+|+++
T Consensus 99 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~~a~i~~~~g~l~ 143 (143)
T cd01059 99 VALALFLLGAFVAKLGGAKKIRAALRMVVLGLLAAALTYLLGRLF 143 (143)
T ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999875
No 12
>COG1814 Uncharacterized membrane protein [Function unknown]
Probab=99.90 E-value=2.7e-23 Score=164.38 Aligned_cols=127 Identities=17% Similarity=0.229 Sum_probs=111.2
Q ss_pred CceecchhhhhhhhhHHHHHHHHHHHHHhh--------------------------------------------cCCCCC
Q 037637 1 MRIATSVLVSVHTQVDTINFQAERDFKMER--------------------------------------------SVDQRT 36 (136)
Q Consensus 1 ~SMa~GeYlS~~sq~d~~~ae~~re~~e~~--------------------------------------------lGi~~~ 36 (136)
+||+.|||+|+++|.|.+.++.++|+++.. .++...
T Consensus 57 l~mi~ge~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 136 (229)
T COG1814 57 LSMIIGEYLSVSSQLDAELAEIQKERRLLALSLGVADALVEILGALRGESEEEAREVAEQLLQGLIVGVHGRLSMGIGAY 136 (229)
T ss_pred HHHHHhhhhhHHHHHhhhhhhhHHHHHHHhcCcchhHHHHHHHHHHcCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 589999999999999999999886553310 223333
Q ss_pred CcccHHHHH-HHHHHHHHhhhhhhhHHHhcccchhhHHHHHHHHHHHHHHHHHHHhHHhcCCCchhHHHHHHHHHHHHHH
Q 037637 37 AVPSAIQIA-VASSLAFLFWGKVPMLAAGFIKDHHLRSSIALVAAILSMVMLGIAGAALGKVPTMRSCVRVVVGGFVAVP 115 (136)
Q Consensus 37 ~~~~P~~aa-l~s~~sF~~Gg~vPllp~~~~~~~~~~~~~s~~~~~~aL~~lG~~~a~~s~~~~~rs~~~~l~~G~~aa~ 115 (136)
...+|++++ +++++||++|+++|++||++..+...+++++++++.++|+++|++++++++.+++|+++||+..|++++.
T Consensus 137 ~~~~~~~~~~l~sg~s~~~G~l~Pllp~~~~~~~~~al~~si~~~~l~L~ilG~~~a~~s~~~~~~~~lr~v~~gl~aa~ 216 (229)
T COG1814 137 LSSRPLLAATLSSGISFIIGALLPLLPFFFLPDVLSALIASIILALLALAILGAVLARLSGASIAKSILRMVLLGLLAAL 216 (229)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 336899999 7999999999999999999995555578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhh
Q 037637 116 IRWGKVKIIENR 127 (136)
Q Consensus 116 vty~iG~l~~~~ 127 (136)
++|.+|++++..
T Consensus 217 lt~~vg~l~~~~ 228 (229)
T COG1814 217 LTYLVGRLFGIF 228 (229)
T ss_pred HHHHHHHHHHhh
Confidence 999999999864
No 13
>cd02437 CCC1_like_1 CCC1-related protein family. CCC1_like_1: This is a protein family closely related to CCC1, a family of proteins involved in iron and manganese transport. Yeast CCC1 is a vacuole transmembrane protein responsible for the iron and manganese accumulation in vacuole.
Probab=88.94 E-value=3.6 Score=31.10 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=17.0
Q ss_pred HhhcCCCCCCcccHHHHHHHHHHHHHhhhhhhhH
Q 037637 28 MERSVDQRTAVPSAIQIAVASSLAFLFWGKVPML 61 (136)
Q Consensus 28 e~~lGi~~~~~~~P~~aal~s~~sF~~Gg~vPll 61 (136)
++|++...++..+|+++++.. .-..+.-++|.+
T Consensus 84 ~~e~~~~~~~~~~al~sgls~-~~G~llPLlp~~ 116 (175)
T cd02437 84 REELAIRKADLPSGLIQGIST-TLGGLLPLLPFL 116 (175)
T ss_pred HHHhccccChHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 334455444555666666633 334555555554
No 14
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=87.12 E-value=9.2 Score=28.72 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 037637 102 SCVRVVVGGFVAVPIRWGKVKIIEN 126 (136)
Q Consensus 102 s~~~~l~~G~~aa~vty~iG~l~~~ 126 (136)
.++-.+.+|++...+++.+.+.+-+
T Consensus 142 ~~i~~~glGlll~~~~~~l~k~~~~ 166 (181)
T PF08006_consen 142 FGIGLFGLGLLLIVITFYLTKLFIK 166 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555667777777777777766644
No 15
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=76.41 E-value=30 Score=26.04 Aligned_cols=22 Identities=9% Similarity=0.030 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHHHHhhcCCC
Q 037637 13 TQVDTINFQAERDFKMERSVDQ 34 (136)
Q Consensus 13 sq~d~~~ae~~re~~e~~lGi~ 34 (136)
.|.-.|++|++||++|+|....
T Consensus 48 GeYv~e~ae~~~e~~ele~~~~ 69 (169)
T TIGR00267 48 GAFTAERAEEEREMRELEKSML 69 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3677889999999998875543
No 16
>COG4709 Predicted membrane protein [Function unknown]
Probab=73.41 E-value=43 Score=26.33 Aligned_cols=17 Identities=18% Similarity=0.116 Sum_probs=7.9
Q ss_pred HHHHHHHHHhhhhhhhH
Q 037637 45 AVASSLAFLFWGKVPML 61 (136)
Q Consensus 45 al~s~~sF~~Gg~vPll 61 (136)
++....+|.+.-.+|++
T Consensus 84 ~~~~L~~~~v~i~Lpl~ 100 (195)
T COG4709 84 ALIGLGLLAVIIGLPLL 100 (195)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444455444444444
No 17
>PF10166 DUF2368: Uncharacterised conserved protein (DUF2368); InterPro: IPR019319 This family is conserved from nematodes to humans. The function is not known.
Probab=64.58 E-value=7.5 Score=28.57 Aligned_cols=57 Identities=12% Similarity=0.016 Sum_probs=28.5
Q ss_pred hhhhhhHHHHHHHHHHHH--------HhhcCCCCCCcccHHHHHHHHHHHHHh----------hhhhhhHHHhcc
Q 037637 10 SVHTQVDTINFQAERDFK--------MERSVDQRTAVPSAIQIAVASSLAFLF----------WGKVPMLAAGFI 66 (136)
Q Consensus 10 S~~sq~d~~~ae~~re~~--------e~~lGi~~~~~~~P~~aal~s~~sF~~----------Gg~vPllp~~~~ 66 (136)
+-+.|+|+++.+++||-. +....+...-+.=.|.++.+...+... .-++|++|..|.
T Consensus 12 ~~k~~Qe~~~~q~Erql~mqn~m~erq~A~qiA~~RE~~~w~~~f~~l~~~~~~~~~~k~K~~~~l~PlvPL~fv 86 (131)
T PF10166_consen 12 NMKKQQEFYRQQMERQLAMQNQMRERQMAMQIAWARELFKWFASFYALAAVGLIAGAIKRKNPLFLIPLVPLTFV 86 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhHHHHHHH
Confidence 345566666666655521 111222222223467666655554433 336777777665
No 18
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=64.33 E-value=92 Score=27.02 Aligned_cols=65 Identities=17% Similarity=0.228 Sum_probs=42.4
Q ss_pred CcccHHHHHHHHHHHHHhhhhhhh-HHHhcccchhhHHHHHHHHHHHHHHHHHHHhHH----hcCCCchhHHHHH
Q 037637 37 AVPSAIQIAVASSLAFLFWGKVPM-LAAGFIKDHHLRSSIALVAAILSMVMLGIAGAA----LGKVPTMRSCVRV 106 (136)
Q Consensus 37 ~~~~P~~aal~s~~sF~~Gg~vPl-lp~~~~~~~~~~~~~s~~~~~~aL~~lG~~~a~----~s~~~~~rs~~~~ 106 (136)
|..+-|++++..++.|.+.|++-= +.-++ ..++.+.+.....|.++|.++.- +++++.+..++-+
T Consensus 295 D~~rry~Aa~~agi~ylv~GlF~~~~~~l~-----~alP~~li~~lAGLALlg~~~~~l~~A~~~~~~R~aAlvt 364 (402)
T COG3135 295 DPARRYTAALVAGIFYLLAGLFGGALVGLM-----AALPASLIAALAGLALLGTLGNSLQAALKDEREREAALVT 364 (402)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHCcHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhhhh
Confidence 345679999999999999887632 11111 24556666667777777766554 4666776655544
No 19
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=64.03 E-value=73 Score=27.57 Aligned_cols=64 Identities=20% Similarity=0.225 Sum_probs=42.8
Q ss_pred cccHHHHHHHHHHHHHhhhhh-hhHHHhcccchhhHHHHHHHHHHHHHHHHHHHh----HHhcCCCchhHHHHH
Q 037637 38 VPSAIQIAVASSLAFLFWGKV-PMLAAGFIKDHHLRSSIALVAAILSMVMLGIAG----AALGKVPTMRSCVRV 106 (136)
Q Consensus 38 ~~~P~~aal~s~~sF~~Gg~v-Pllp~~~~~~~~~~~~~s~~~~~~aL~~lG~~~----a~~s~~~~~rs~~~~ 106 (136)
.++-|.+++..++.|.+.++. +.+..++. .++..++.+...|.++|.+. +-+.+.+.+.+++-+
T Consensus 297 ~~rR~~a~i~~Gv~yll~glfag~i~~l~~-----~~P~~li~~laGlAll~~~~~~l~~a~~~~~~r~~a~~t 365 (395)
T TIGR00843 297 KDKRWIAAAAAGIFYLLAGLFAGAITALFA-----ALPKELIAALAGLALLGAIAGNIKIALHEDQERDAALIA 365 (395)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHH-----HCCHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHH
Confidence 456799999999999999998 77766654 23444555555566665554 444556666666555
No 20
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=56.49 E-value=1e+02 Score=24.63 Aligned_cols=25 Identities=4% Similarity=-0.153 Sum_probs=19.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Q 037637 99 TMRSCVRVVVGGFVAVPIRWGKVKI 123 (136)
Q Consensus 99 ~~rs~~~~l~~G~~aa~vty~iG~l 123 (136)
..|...+.+......+.+++.+|.+
T Consensus 253 ~~~~~~~~~~~~m~~g~~~~~~~~~ 277 (279)
T PRK09573 253 GASKASKYLKIIMILGLIAFLIGSL 277 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3466777788888888888888864
No 21
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=53.04 E-value=97 Score=23.37 Aligned_cols=72 Identities=8% Similarity=-0.020 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHhcccchhhHHHHHHHHHHHHHHHHHHHhHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 037637 41 AIQIAVASSLAFLFWGKVPMLAAGFIKDHHLRSSIALVAAILSMVMLGIAGAALGKVPTMRSCVRVVVGGFVAVPIRWGK 120 (136)
Q Consensus 41 P~~aal~s~~sF~~Gg~vPllp~~~~~~~~~~~~~s~~~~~~aL~~lG~~~a~~s~~~~~rs~~~~l~~G~~aa~vty~i 120 (136)
||..++..+++-.+..+.+.- ....++.+.+ ..++..+..|-++..++....|.+..|.+.+.++|-+
T Consensus 47 P~~g~~~a~i~~ll~~l~~~g-------~~~afpg~~~-----~a~laGliyrk~~~~~~a~~ge~igt~iig~~~s~pi 114 (160)
T TIGR02359 47 PWYALAVAFIIGLLRNTLGLG-------TVLAFPGGMP-----GALLAGLLYRFGRKHYWASLGEILGTGIIGSLLAYPV 114 (160)
T ss_pred hHHHHHHHHHHHHHHHHhCCC-------chHHHHHHHH-----HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777776666554311 1123332222 1222333346667777788999999999999988887
Q ss_pred HHHh
Q 037637 121 VKII 124 (136)
Q Consensus 121 G~l~ 124 (136)
-..+
T Consensus 115 ~~~~ 118 (160)
T TIGR02359 115 AAWL 118 (160)
T ss_pred HHHH
Confidence 7544
No 22
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=50.58 E-value=91 Score=23.82 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=24.2
Q ss_pred CCcccHHHHHHHHHHHHHhhhhhhhHHHhcccc
Q 037637 36 TAVPSAIQIAVASSLAFLFWGKVPMLAAGFIKD 68 (136)
Q Consensus 36 ~~~~~P~~aal~s~~sF~~Gg~vPllp~~~~~~ 68 (136)
.+.+|++++.+.-.+.+.++..-|.+|+++..|
T Consensus 101 g~Yks~~~~~ia~~~~~~~~~~g~~~p~~~~~d 133 (189)
T TIGR02185 101 GGYKNKRKVTIAYVLFFLLVAMGPILPIWLFKD 133 (189)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 456788888887666666777788888887643
No 23
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=47.76 E-value=79 Score=25.03 Aligned_cols=12 Identities=25% Similarity=0.360 Sum_probs=6.2
Q ss_pred hhhhhhhHHHhc
Q 037637 54 FWGKVPMLAAGF 65 (136)
Q Consensus 54 ~Gg~vPllp~~~ 65 (136)
+.+++|++|+++
T Consensus 240 l~~l~p~~~~~~ 251 (262)
T PF14257_consen 240 LVGLLPWLPLIL 251 (262)
T ss_pred HHHHHHHHHHHH
Confidence 445555555543
No 24
>COG2056 Predicted permease [General function prediction only]
Probab=47.69 E-value=77 Score=27.64 Aligned_cols=58 Identities=10% Similarity=0.117 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 037637 72 RSSIALVAAILSMVMLGIAGAALGKVPTMRSCVRVVVGGFVAVPIRWGKVKIIENRLHI 130 (136)
Q Consensus 72 ~~~~s~~~~~~aL~~lG~~~a~~s~~~~~rs~~~~l~~G~~aa~vty~iG~l~~~~~~i 130 (136)
+.+....+..+.+++.|.+|-+=++.-.-.+.-.|-.+|. -|.++-+.+..+....++
T Consensus 263 smilgal~gliv~~~~gv~~~ke~d~~~~~G~kmMa~IgF-VMl~AaGfa~Vi~~TG~V 320 (444)
T COG2056 263 SMILGALAGLIVFFLSGVIKWKETDDVFTEGVKMMAFIGF-VMLVAAGFAEVINATGAV 320 (444)
T ss_pred cchHHHHHHHHHHHHhcceehhhhHHHHHhhHHHHHHHHH-HHHHHhHHHHHHHhccCH
Confidence 3555556666677788888877776666556666666666 566666666666655444
No 25
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=47.51 E-value=71 Score=25.62 Aligned_cols=25 Identities=12% Similarity=-0.141 Sum_probs=9.8
Q ss_pred HHHhHHhcCCCchhHHHHHHHHHHHH
Q 037637 88 GIAGAALGKVPTMRSCVRVVVGGFVA 113 (136)
Q Consensus 88 G~~~a~~s~~~~~rs~~~~l~~G~~a 113 (136)
+.+.+.+.+ +||--.+--+..|+++
T Consensus 42 ~v~ig~l~~-~~~~~~i~gi~~g~l~ 66 (224)
T PF13829_consen 42 FVLIGLLFG-SWWYWLIIGILLGLLA 66 (224)
T ss_pred HHHHHHHHc-cHHHHHHHHHHHHHHH
Confidence 333333333 4444433334444433
No 26
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=46.73 E-value=1.9e+02 Score=24.96 Aligned_cols=66 Identities=23% Similarity=0.300 Sum_probs=39.0
Q ss_pred cccHHHHHHHHHHHHHhhhhhhh-HHHhcccchhhHHHHHHHHHHHHHHHHHH----HhHHhcCCCchhHHHHHHH
Q 037637 38 VPSAIQIAVASSLAFLFWGKVPM-LAAGFIKDHHLRSSIALVAAILSMVMLGI----AGAALGKVPTMRSCVRVVV 108 (136)
Q Consensus 38 ~~~P~~aal~s~~sF~~Gg~vPl-lp~~~~~~~~~~~~~s~~~~~~aL~~lG~----~~a~~s~~~~~rs~~~~l~ 108 (136)
.++-|++++..+..|.+.|+.-= +.-++. .++-..+.....|.++|. +.+-+++...+.+++-+.+
T Consensus 281 p~rRy~Aav~~Gv~yll~Gl~a~~~v~l~~-----~lP~~li~~lAGLALlg~l~~sl~~A~~~~~~r~aAlvtFl 351 (378)
T PF03594_consen 281 PSRRYIAAVAAGVFYLLFGLFAAALVALFA-----ALPPALIAALAGLALLGTLGGSLQTAFSDEKYREAALVTFL 351 (378)
T ss_pred cccchHHHHHHhHHHHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence 35679999999999999887632 222222 222333444444555544 4555666666666665543
No 27
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=44.98 E-value=55 Score=24.69 Aligned_cols=27 Identities=11% Similarity=0.042 Sum_probs=16.9
Q ss_pred hhcCCCCCCcccHHHHHHHHHHHHHhhhhhhhHHHhc
Q 037637 29 ERSVDQRTAVPSAIQIAVASSLAFLFWGKVPMLAAGF 65 (136)
Q Consensus 29 ~~lGi~~~~~~~P~~aal~s~~sF~~Gg~vPllp~~~ 65 (136)
+|+|++| ++++++|+..-+. ||+-+++
T Consensus 65 VeiGi~E---kslL~sA~LvYi~-------PL~~l~v 91 (150)
T COG3086 65 VELGIEE---KSLLKSALLVYIF-------PLVGLFL 91 (150)
T ss_pred EEEccCc---ccHHHHHHHHHHH-------HHHHHHH
Confidence 4577755 5789998755443 6665543
No 28
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=40.88 E-value=45 Score=19.23 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhcCCC
Q 037637 73 SSIALVAAILSMVMLGIAGAALGKVP 98 (136)
Q Consensus 73 ~~~s~~~~~~aL~~lG~~~a~~s~~~ 98 (136)
+.-+++...++||++|....--++.|
T Consensus 7 ~Vy~vV~ffv~LFifGflsnDp~RnP 32 (36)
T PF02532_consen 7 FVYTVVIFFVSLFIFGFLSNDPGRNP 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTSSS
T ss_pred eehhhHHHHHHHHhccccCCCCCCCC
Confidence 34467777888999999877655444
No 29
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=40.28 E-value=1e+02 Score=19.98 Aligned_cols=24 Identities=17% Similarity=-0.021 Sum_probs=15.2
Q ss_pred cHHHHHHHHHHHHHhhhhhhhHHHh
Q 037637 40 SAIQIAVASSLAFLFWGKVPMLAAG 64 (136)
Q Consensus 40 ~P~~aal~s~~sF~~Gg~vPllp~~ 64 (136)
+| +..+...+++++|.++++.-.+
T Consensus 55 ~P-~~~lil~l~~~~Gl~lgi~~~~ 78 (82)
T PF13807_consen 55 SP-KRALILALGLFLGLILGIGLAF 78 (82)
T ss_pred CC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 44 4556667777777777766544
No 30
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=40.26 E-value=94 Score=27.16 Aligned_cols=32 Identities=19% Similarity=0.000 Sum_probs=22.6
Q ss_pred CCCcccHHHHHHHHHHHHHhhhhhhhHHHhccc
Q 037637 35 RTAVPSAIQIAVASSLAFLFWGKVPMLAAGFIK 67 (136)
Q Consensus 35 ~~~~~~P~~aal~s~~sF~~Gg~vPllp~~~~~ 67 (136)
..+.+||-|+++= .++=.-|-++|.+-|++..
T Consensus 88 ~GeL~~~~~a~lP-~~aAlGGm~vPaliy~~~n 119 (423)
T PRK14853 88 AGDLRDPSRAALP-VAAALGGMIVPALIYVAVN 119 (423)
T ss_pred ccchhhHHHHHHH-HHHHHHhHHHHHHHHHHHh
Confidence 3455666666664 6666778889999998764
No 31
>KOG4783 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.40 E-value=1.4e+02 Score=21.11 Aligned_cols=69 Identities=19% Similarity=0.121 Sum_probs=42.4
Q ss_pred CCCCcccHHHHHHHHHHHHH-hhhhhhhHHHhccc-----------chhhHHHHHHHHHHHHHHHHHH--HhHHhcCCCc
Q 037637 34 QRTAVPSAIQIAVASSLAFL-FWGKVPMLAAGFIK-----------DHHLRSSIALVAAILSMVMLGI--AGAALGKVPT 99 (136)
Q Consensus 34 ~~~~~~~P~~aal~s~~sF~-~Gg~vPllp~~~~~-----------~~~~~~~~s~~~~~~aL~~lG~--~~a~~s~~~~ 99 (136)
+++.......+.+-+.++|. +--.+|+..|+... ..+..++.+++.++.....+|. +.|+..+.+-
T Consensus 16 ppn~r~qs~~s~vktlLfy~~lii~vPiatfF~lK~fvleg~lgis~~da~iySaI~aVVavHvalglyiy~A~~~~sr~ 95 (102)
T KOG4783|consen 16 PPNTRIQSSVSIVKTLLFYCSLIIGVPIATFFALKFFVLEGYLGISEVDADIYSAICAVVAVHVALGLYIYRAIYAKSRT 95 (102)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 34444444677777777774 44568999887532 1223456666666666777776 4566666666
Q ss_pred hhH
Q 037637 100 MRS 102 (136)
Q Consensus 100 ~rs 102 (136)
+|.
T Consensus 96 ~ke 98 (102)
T KOG4783|consen 96 AKE 98 (102)
T ss_pred ccc
Confidence 664
No 32
>PRK10457 hypothetical protein; Provisional
Probab=36.28 E-value=1.3e+02 Score=20.11 Aligned_cols=39 Identities=10% Similarity=-0.024 Sum_probs=23.7
Q ss_pred HHHHhHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 037637 87 LGIAGAALGKVPTMRSCVRVVVGGFVAVPIRWGKVKIIE 125 (136)
Q Consensus 87 lG~~~a~~s~~~~~rs~~~~l~~G~~aa~vty~iG~l~~ 125 (136)
.|.+..++.+.+-....+.++++|.+.+.+...+++.++
T Consensus 13 aG~lA~~i~pg~~~~G~~~tiilGiiGA~iGg~l~~~~g 51 (82)
T PRK10457 13 AGILAKWIMPGKDGGGFFMTIILGIVGAVVGGWISTFFG 51 (82)
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344444444333334677778888877777777766654
No 33
>PRK10404 hypothetical protein; Provisional
Probab=35.49 E-value=41 Score=23.49 Aligned_cols=23 Identities=9% Similarity=0.076 Sum_probs=14.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 037637 96 KVPTMRSCVRVVVGGFVAVPIRWGKVKIIE 125 (136)
Q Consensus 96 ~~~~~rs~~~~l~~G~~aa~vty~iG~l~~ 125 (136)
..|||++. | +++++++.+|.|+.
T Consensus 77 ~e~Pw~av------G-iaagvGlllG~Ll~ 99 (101)
T PRK10404 77 HEKPWQGI------G-VGAAVGLVLGLLLA 99 (101)
T ss_pred HhCcHHHH------H-HHHHHHHHHHHHHh
Confidence 35777753 3 36667777777764
No 34
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=35.04 E-value=1.1e+02 Score=18.98 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhcCCCc--hhHHHHHHHHHHHH
Q 037637 73 SSIALVAAILSMVMLGIAGAALGKVPT--MRSCVRVVVGGFVA 113 (136)
Q Consensus 73 ~~~s~~~~~~aL~~lG~~~a~~s~~~~--~rs~~~~l~~G~~a 113 (136)
+.|++++ ..++|++.+.+++.+. ..+..-.++.|.+.
T Consensus 7 ~fWs~il----~~vvgyI~ssL~~~~~n~~~~~Ii~vi~~i~~ 45 (57)
T PF11151_consen 7 FFWSFIL----GEVVGYIGSSLTGVTYNFTTAAIIAVIFGIIV 45 (57)
T ss_pred hHHHHHH----HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 4444444 5678888888888744 33433334444333
No 35
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=34.61 E-value=1.4e+02 Score=19.98 Aligned_cols=20 Identities=25% Similarity=0.140 Sum_probs=12.5
Q ss_pred HHHHHHHhhhhhhhHHHhcc
Q 037637 47 ASSLAFLFWGKVPMLAAGFI 66 (136)
Q Consensus 47 ~s~~sF~~Gg~vPllp~~~~ 66 (136)
.+.+.-.+++++|++..+..
T Consensus 24 ~~i~~~~~~a~i~~l~~~~~ 43 (112)
T PF14015_consen 24 ASIILSVLGAVIPVLASLSG 43 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34444447888998666543
No 36
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=34.54 E-value=1.3e+02 Score=23.11 Aligned_cols=39 Identities=18% Similarity=0.075 Sum_probs=30.5
Q ss_pred HHHhHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037637 88 GIAGAALGKVPTMRSCVRVVVGGFVAVPIRWGKVKIIEN 126 (136)
Q Consensus 88 G~~~a~~s~~~~~rs~~~~l~~G~~aa~vty~iG~l~~~ 126 (136)
+.+.+..+.-|++-..+-..+.+.+...+.|.+|+.+++
T Consensus 45 ~G~l~~~g~~~~~~~i~~~~lga~lGd~i~Y~iGr~~G~ 83 (208)
T COG0586 45 AGALAAQGKLNLWLVILVATLGALLGDLISYWIGRRFGR 83 (208)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcH
Confidence 333334557888888888888889999999999999875
No 37
>TIGR00997 ispZ intracellular septation protein A. This partially characterized protein, whose absence can cause a cell division defect in an intracellularly replicating bacterium, is found only so far only in the Proteobacteria.
Probab=34.48 E-value=2e+02 Score=22.09 Aligned_cols=10 Identities=10% Similarity=0.089 Sum_probs=5.9
Q ss_pred hhhhHHHhcc
Q 037637 57 KVPMLAAGFI 66 (136)
Q Consensus 57 ~vPllp~~~~ 66 (136)
+.|++.|+..
T Consensus 7 ~~Pli~Ff~~ 16 (178)
T TIGR00997 7 LLPLIVFFAT 16 (178)
T ss_pred HHHHHHHHHH
Confidence 4566666654
No 38
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=33.32 E-value=2.1e+02 Score=22.93 Aligned_cols=14 Identities=14% Similarity=-0.002 Sum_probs=7.8
Q ss_pred hhhhHHHHHHHHHH
Q 037637 12 HTQVDTINFQAERD 25 (136)
Q Consensus 12 ~sq~d~~~ae~~re 25 (136)
..=||+.+.|++|+
T Consensus 64 ~~iND~~D~eiD~~ 77 (289)
T COG0382 64 YVINDLADREIDRI 77 (289)
T ss_pred HHHHHHhhhhccCC
Confidence 34567666555544
No 39
>PRK10132 hypothetical protein; Provisional
Probab=33.16 E-value=42 Score=23.72 Aligned_cols=20 Identities=5% Similarity=0.016 Sum_probs=15.0
Q ss_pred ccHHHHH-HHHHHHHHhhhhh
Q 037637 39 PSAIQIA-VASSLAFLFWGKV 58 (136)
Q Consensus 39 ~~P~~aa-l~s~~sF~~Gg~v 58 (136)
+|||++- +..++.|++|.++
T Consensus 84 ~~Pw~svgiaagvG~llG~Ll 104 (108)
T PRK10132 84 ERPWCSVGTAAAVGIFIGALL 104 (108)
T ss_pred hCcHHHHHHHHHHHHHHHHHH
Confidence 5999985 6777777777663
No 40
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=33.04 E-value=2.7e+02 Score=22.78 Aligned_cols=75 Identities=17% Similarity=0.062 Sum_probs=46.3
Q ss_pred HHHHHHHhhhhhhhHHHhcccc-hhhHHHHHHHHHHHHHHHHHHHhHHhcCC---Cch----hHHHHHHHHHHHHHHHHH
Q 037637 47 ASSLAFLFWGKVPMLAAGFIKD-HHLRSSIALVAAILSMVMLGIAGAALGKV---PTM----RSCVRVVVGGFVAVPIRW 118 (136)
Q Consensus 47 ~s~~sF~~Gg~vPllp~~~~~~-~~~~~~~s~~~~~~aL~~lG~~~a~~s~~---~~~----rs~~~~l~~G~~aa~vty 118 (136)
...+++.++...|..|.++... .+.--..+-..+-++|+.+|+..++-... +.. ....|+++.=++...+.+
T Consensus 249 a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~ 328 (385)
T PF03547_consen 249 AIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLIGIGIVF 328 (385)
T ss_pred HHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666433211 01122344566788899999887754222 111 266788998888888888
Q ss_pred HHH
Q 037637 119 GKV 121 (136)
Q Consensus 119 ~iG 121 (136)
.++
T Consensus 329 ~~~ 331 (385)
T PF03547_consen 329 LLG 331 (385)
T ss_pred HHC
Confidence 777
No 41
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=32.51 E-value=2.5e+02 Score=22.17 Aligned_cols=24 Identities=8% Similarity=0.218 Sum_probs=16.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q 037637 99 TMRSCVRVVVGGFVAVPIRWGKVK 122 (136)
Q Consensus 99 ~~rs~~~~l~~G~~aa~vty~iG~ 122 (136)
..+..-.....|.+-+.+++.+|.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~ 277 (279)
T PRK12884 254 TIRKVRKITLTAMLLALVAFALGA 277 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555667777777778887775
No 42
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=32.02 E-value=42 Score=22.47 Aligned_cols=13 Identities=8% Similarity=0.020 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhh
Q 037637 113 AVPIRWGKVKIIE 125 (136)
Q Consensus 113 aa~vty~iG~l~~ 125 (136)
|+++++++|.++.
T Consensus 80 AagvG~llG~Ll~ 92 (94)
T PF05957_consen 80 AAGVGFLLGLLLR 92 (94)
T ss_pred HHHHHHHHHHHHh
Confidence 5556666666654
No 43
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=31.59 E-value=1.7e+02 Score=21.06 Aligned_cols=34 Identities=12% Similarity=0.074 Sum_probs=26.4
Q ss_pred CCCcccHHHHHHHHHHHHHhhhhhhhHHHhcccc
Q 037637 35 RTAVPSAIQIAVASSLAFLFWGKVPMLAAGFIKD 68 (136)
Q Consensus 35 ~~~~~~P~~aal~s~~sF~~Gg~vPllp~~~~~~ 68 (136)
.++.++.++.+.--..+..+|+++-++-+.+..+
T Consensus 41 q~T~~~S~~~~~~Ri~~~~iG~~~a~~~~~~~g~ 74 (141)
T PF06081_consen 41 QPTVYRSLKQGLNRILGTLIGALLALLFFLILGY 74 (141)
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 3455788899999999999999988887765533
No 44
>PF01062 Bestrophin: Bestrophin, RFP-TM, chloride channel; InterPro: IPR021134 Bestrophin is a 68kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE). It is encoded by the VMD2 gene, which is mutated in Best macular dystrophy, a disease characterised by a depressed light peak in the electrooculogram []. VMD2 encodes a 585-amino acid protein with an approximate mass of 68 kDa which has been designated bestrophin. Bestrophin shares homology with the Caenorhabditis elegans RFP gene family, named for the presence of a conserved arginine (R), phenylalanine (F), proline (P), amino acid sequence motif. Bestrophin is a plasma membrane protein, localised to the basolateral surface of RPE cells consistent with a role for bestrophin in the generation or regulation of the EOG light peak. Bestrophin and other RFP family members represent a new class of chloride channels, indicating a direct role for bestrophin in generating the light peak []. The VMD2 gene underlying Best disease was shown to represent the first human member of the RFP-TM protein family. More than 97% of the disease-causing mutations are located in the N-terminal RFP-TM domain implying important functional properties []. This entry also includes a number of hypothetical proteins belonging to protein family UPF0187.
Probab=30.62 E-value=2.7e+02 Score=21.95 Aligned_cols=55 Identities=16% Similarity=0.273 Sum_probs=38.7
Q ss_pred CCCcccHHHHHHHHHHHHHhhhhhhhHHHhcccchhhHHHHHHHHHHHHHHHHHHHh
Q 037637 35 RTAVPSAIQIAVASSLAFLFWGKVPMLAAGFIKDHHLRSSIALVAAILSMVMLGIAG 91 (136)
Q Consensus 35 ~~~~~~P~~aal~s~~sF~~Gg~vPllp~~~~~~~~~~~~~s~~~~~~aL~~lG~~~ 91 (136)
+.-...|.--+.+..++.++...+.++||.+... .......+.+.++++++|.-+
T Consensus 208 eri~~TPiP~~Y~~~~~~~l~~y~~~lPf~l~~~--~~~~~~~~~~l~~~~~~gl~~ 262 (293)
T PF01062_consen 208 ERIKNTPIPFAYTQHLSRFLYIYLLLLPFGLVDS--LGWLTPPITFLVSFFFLGLEE 262 (293)
T ss_pred heeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3344678888889999999999999999988743 333444555556666676643
No 45
>COG2733 Predicted membrane protein [Function unknown]
Probab=30.62 E-value=2.3e+02 Score=24.80 Aligned_cols=54 Identities=9% Similarity=0.007 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHhHHhcCCCchh----HHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 037637 77 LVAAILSMVMLGIAGAALGKVPTMR----SCVRVVVGGFVAVPIRWGKVKIIENRLHINE 132 (136)
Q Consensus 77 ~~~~~~aL~~lG~~~a~~s~~~~~r----s~~~~l~~G~~aa~vty~iG~l~~~~~~i~~ 132 (136)
+...++..++.|++.+++-..|.|- +.+|...+|++|= =|.+--+|.+-++|++
T Consensus 13 iA~~lL~i~~~~f~l~~~~~nn~w~g~v~a~aEAAmVGgLAD--WFAVtALFr~Plgipi 70 (415)
T COG2733 13 IATGLLLIAAGVFILCRFFENNAWVGFVGAIAEAAMVGGLAD--WFAVTALFRHPLGIPI 70 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHHH--HHHHHHHHhcCCCCCC
Confidence 4455666778888888888887766 4555555665543 3566677887777765
No 46
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=30.61 E-value=55 Score=23.24 Aligned_cols=24 Identities=8% Similarity=0.086 Sum_probs=15.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037637 96 KVPTMRSCVRVVVGGFVAVPIRWGKVKIIEN 126 (136)
Q Consensus 96 ~~~~~rs~~~~l~~G~~aa~vty~iG~l~~~ 126 (136)
+.|||.++ |+ ++++++++|.|+++
T Consensus 80 ~e~PWq~V------Gv-aAaVGlllGlLlsR 103 (104)
T COG4575 80 RENPWQGV------GV-AAAVGLLLGLLLSR 103 (104)
T ss_pred HcCCchHH------HH-HHHHHHHHHHHHhc
Confidence 46666663 33 66677788877753
No 47
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=30.16 E-value=4.1e+02 Score=23.86 Aligned_cols=89 Identities=11% Similarity=0.161 Sum_probs=50.7
Q ss_pred CCCcccHHHHHHHHHHHHHhhhhhhhHHHhcccchhhHHHHHHHHHHHHHHHHHHHhHHhcCCC---ch--hHHHHHHHH
Q 037637 35 RTAVPSAIQIAVASSLAFLFWGKVPMLAAGFIKDHHLRSSIALVAAILSMVMLGIAGAALGKVP---TM--RSCVRVVVG 109 (136)
Q Consensus 35 ~~~~~~P~~aal~s~~sF~~Gg~vPllp~~~~~~~~~~~~~s~~~~~~aL~~lG~~~a~~s~~~---~~--rs~~~~l~~ 109 (136)
.+|.+.|.+.++.+.+.=.+....+..++- +...++..+......+.+..-...-+....+ |. . ..+.++.
T Consensus 382 r~d~ktP~~i~ii~~~~n~~l~~~l~~~~~---~~giala~s~a~~~~~~ll~~~l~k~~~~~~~~~~~~~~-~~k~~l~ 457 (518)
T COG0728 382 REDTKTPMKIAIISLVVNILLNLLLIPPLG---HVGLALATSLAAWVNALLLYYLLRKRLVYLPGRGWGLFL-ILKLLLA 457 (518)
T ss_pred ccCCCcChHHHHHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHH-HHHHHHH
Confidence 455678888887776666665533333321 3333444443333444444444444443222 21 2 4788888
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 037637 110 GFVAVPIRWGKVKIIENR 127 (136)
Q Consensus 110 G~~aa~vty~iG~l~~~~ 127 (136)
..+++.+.|.+-+..+..
T Consensus 458 ~~i~~~~~~~~~~~~~~~ 475 (518)
T COG0728 458 SAIMAAALLALLHLAQRE 475 (518)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888887743
No 48
>PRK11602 cysW sulfate/thiosulfate transporter permease subunit; Provisional
Probab=29.84 E-value=2.8e+02 Score=21.93 Aligned_cols=24 Identities=21% Similarity=0.019 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHh
Q 037637 41 AIQIAVASSLAFLFWGKVPMLAAG 64 (136)
Q Consensus 41 P~~aal~s~~sF~~Gg~vPllp~~ 64 (136)
+|...+-..+-+.++-++|++..+
T Consensus 19 ~~~~~~p~~~~~~~~~~~P~~~~~ 42 (283)
T PRK11602 19 KWFLIGIGMLVSAFILVVPMIYIF 42 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344445666677776554
No 49
>PHA00094 VI minor coat protein
Probab=29.54 E-value=1.9e+02 Score=20.73 Aligned_cols=41 Identities=5% Similarity=-0.112 Sum_probs=20.5
Q ss_pred HHHHHHHhHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 037637 84 MVMLGIAGAALGKVPTMRSCVRVVVGGFVAVPIRWGKVKII 124 (136)
Q Consensus 84 L~~lG~~~a~~s~~~~~rs~~~~l~~G~~aa~vty~iG~l~ 124 (136)
-.++|++..++++.=-+..-.-.+++|++-+..+...+.+-
T Consensus 19 ~~~~gyfa~f~tk~iarn~liisl~igLil~~~~~l~~~l~ 59 (112)
T PHA00094 19 ANLIGYFAKFFTRGIARNALAISLFIGLILGLNSALVALLS 59 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666544333344444555555555544444443
No 50
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=29.50 E-value=1.4e+02 Score=21.12 Aligned_cols=21 Identities=24% Similarity=0.118 Sum_probs=11.5
Q ss_pred ccHHHHHHHHHHHHHhhhhhhhHHHhcc
Q 037637 39 PSAIQIAVASSLAFLFWGKVPMLAAGFI 66 (136)
Q Consensus 39 ~~P~~aal~s~~sF~~Gg~vPllp~~~~ 66 (136)
.+.+++++... ++|++.+++.
T Consensus 65 ~~~~~aa~l~Y-------~lPll~li~g 85 (135)
T PF04246_consen 65 SSLLKAAFLVY-------LLPLLALIAG 85 (135)
T ss_pred chHHHHHHHHH-------HHHHHHHHHH
Confidence 35566655433 3477766643
No 51
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=29.38 E-value=3.6e+02 Score=23.07 Aligned_cols=83 Identities=10% Similarity=0.134 Sum_probs=48.5
Q ss_pred ccHHHHHHHHHHHHHhhhhhhhHH---H--hcccchhhHHHHHHHHHHHHHHHH---HHHhHHh-----cCCCchhHHHH
Q 037637 39 PSAIQIAVASSLAFLFWGKVPMLA---A--GFIKDHHLRSSIALVAAILSMVML---GIAGAAL-----GKVPTMRSCVR 105 (136)
Q Consensus 39 ~~P~~aal~s~~sF~~Gg~vPllp---~--~~~~~~~~~~~~s~~~~~~aL~~l---G~~~a~~-----s~~~~~rs~~~ 105 (136)
.-.+-.++..+++-.+|.++|.+- + ++..+.......-++++.+...+. |..|.+- .+-|..|..+-
T Consensus 98 GvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~~~~~~~efn~~kGl~i 177 (344)
T PF06379_consen 98 GVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKELGEEAKEFNFKKGLII 177 (344)
T ss_pred hHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhhhccchhhhhhhhhHHH
Confidence 345667888889999999997662 1 122222223333444444444444 3444443 22356777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 037637 106 VVVGGFVAVPIRWGKV 121 (136)
Q Consensus 106 ~l~~G~~aa~vty~iG 121 (136)
-++-|...+...|++-
T Consensus 178 Av~sGv~Sa~fn~g~~ 193 (344)
T PF06379_consen 178 AVLSGVMSACFNFGLD 193 (344)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7888888877776653
No 52
>COG1007 NuoN NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]
Probab=29.35 E-value=94 Score=27.60 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=25.2
Q ss_pred cccHHHHHHHHHHHHHhhhhhhhHHHh
Q 037637 38 VPSAIQIAVASSLAFLFWGKVPMLAAG 64 (136)
Q Consensus 38 ~~~P~~aal~s~~sF~~Gg~vPllp~~ 64 (136)
+++|+-+...+..-|.+.|++|+.-|+
T Consensus 359 ~~~P~~A~~~~i~m~SLaGIPP~~GF~ 385 (475)
T COG1007 359 KRHPLLAALLTILMLSLAGIPPLAGFW 385 (475)
T ss_pred ccCcHHHHHHHHHHHHHcCCCchhhHH
Confidence 478999999999999999999999986
No 53
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=29.18 E-value=2.2e+02 Score=20.52 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHH
Q 037637 71 LRSSIALVAAILSMVMLGIAGAA 93 (136)
Q Consensus 71 ~~~~~s~~~~~~aL~~lG~~~a~ 93 (136)
..+++-+++++++.+..|++.+.
T Consensus 79 ls~v~Nilvsv~~~~~~~~~~~~ 101 (142)
T PF11712_consen 79 LSTVFNILVSVFAVFFAGWYWAG 101 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777775554
No 54
>PF06380 DUF1072: Protein of unknown function (DUF1072); InterPro: IPR009426 This family consists of several Barley yellow dwarf virus proteins of unknown function.
Probab=29.10 E-value=1e+02 Score=18.04 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHh
Q 037637 71 LRSSIALVAAILSMVMLGIAGAAL 94 (136)
Q Consensus 71 ~~~~~s~~~~~~aL~~lG~~~a~~ 94 (136)
..++..|+++...|+.+|++.+.=
T Consensus 4 LhVIAvC~La~Tvl~g~gav~~cC 27 (39)
T PF06380_consen 4 LHVIAVCVLALTVLTGLGAVSSCC 27 (39)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888888888887753
No 55
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=29.09 E-value=43 Score=25.62 Aligned_cols=25 Identities=12% Similarity=0.228 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhHHhcCCCc
Q 037637 75 IALVAAILSMVMLGIAGAALGKVPT 99 (136)
Q Consensus 75 ~s~~~~~~aL~~lG~~~a~~s~~~~ 99 (136)
++=++++++.+++|++.++++-++.
T Consensus 117 IaGIvsav~valvGAvsSyiaYqkK 141 (169)
T PF12301_consen 117 IAGIVSAVVVALVGAVSSYIAYQKK 141 (169)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556688889999999999986654
No 56
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=29.03 E-value=2.5e+02 Score=21.13 Aligned_cols=47 Identities=13% Similarity=0.182 Sum_probs=32.6
Q ss_pred HHHHhHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh-hhccccc
Q 037637 87 LGIAGAALGKVPTMRSCVRVVVGGFVAVPIRWGKVKIIEN-RLHINEG 133 (136)
Q Consensus 87 lG~~~a~~s~~~~~rs~~~~l~~G~~aa~vty~iG~l~~~-~~~i~~~ 133 (136)
.|.-.+.-=-+...+.+++.++.|.+...+...+...+.+ .+++|.+
T Consensus 67 VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~ 114 (169)
T PF06826_consen 67 VGLSAGPGFFSSLKRGGLKLLLLGVIITLVPLLIALVIGRYLFKLNPG 114 (169)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 4444333333456667888888888888888888888887 7777654
No 57
>PF11361 DUF3159: Protein of unknown function (DUF3159); InterPro: IPR016566 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=28.81 E-value=1.8e+02 Score=22.50 Aligned_cols=68 Identities=18% Similarity=0.201 Sum_probs=27.8
Q ss_pred hhhhhHHHhcccchhhHHHHHHHHHHHHHHHHHHHhHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 037637 56 GKVPMLAAGFIKDHHLRSSIALVAAILSMVMLGIAGAALGKVPTMRSCVRVVVGGFVAVPIRWGKVKIIE 125 (136)
Q Consensus 56 g~vPllp~~~~~~~~~~~~~s~~~~~~aL~~lG~~~a~~s~~~~~rs~~~~l~~G~~aa~vty~iG~l~~ 125 (136)
+.+|.+.|.........+..+++.+...-. ....-|+.++...+.++--++.=.+++.+++.-|+.-+
T Consensus 10 s~lP~lvF~v~~~~~~~L~~aliaA~~~a~--~~~v~RL~r~~~~~~a~~gl~gV~i~a~~A~~tG~A~~ 77 (187)
T PF11361_consen 10 SILPVLVFVVANAATFGLTPALIAALAVAV--VIVVWRLVRRESVQPALSGLFGVAISAAIAWRTGSAKD 77 (187)
T ss_pred eccChhhhhhHHHhhcchHHHHHHHHHHHH--HHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHCChhh
Confidence 456777776542211222222222222111 12334444444444444333333344555555454433
No 58
>PF12344 UvrB: Ultra-violet resistance protein B; InterPro: IPR024759 This entry represents a domain found towards the C terminus of the ultraviolet resistance protein B (UvrB). UvrB conveys mutational resistance against UV light to various different species []. This domain is approximately 40 amino acids in length and contains two conserved sequence motifs: YAD and RRR.; PDB: 2D7D_A 2NMV_A 3UWX_B 1D2M_A 1C4O_A 2FDC_A 1D9Z_A 1T5L_B 1D9X_A.
Probab=28.81 E-value=69 Score=19.24 Aligned_cols=30 Identities=10% Similarity=0.087 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHHHH---hhcCCCCCCcccHH
Q 037637 13 TQVDTINFQAERDFKM---ERSVDQRTAVPSAI 42 (136)
Q Consensus 13 sq~d~~~ae~~re~~e---~~lGi~~~~~~~P~ 42 (136)
=|+-+.+.+++|+.++ .++|+.|.....++
T Consensus 10 M~~ai~eT~rRR~~Q~~yN~~h~ItP~ti~k~i 42 (44)
T PF12344_consen 10 MQKAIDETNRRREIQIAYNKEHGITPKTIKKKI 42 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcCcCccC
Confidence 3556677788888776 36888877655544
No 59
>TIGR01594 holin_lambda phage holin, lambda family. This model represents one of a large number of mutally dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=27.86 E-value=2.2e+02 Score=20.00 Aligned_cols=35 Identities=6% Similarity=-0.102 Sum_probs=25.6
Q ss_pred HHHHhHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q 037637 87 LGIAGAALGKVPTMRSCVRVVVGGFVAVPIRWGKV 121 (136)
Q Consensus 87 lG~~~a~~s~~~~~rs~~~~l~~G~~aa~vty~iG 121 (136)
.-++..+..|.++.|..++-++.|.+|-.+.-.+-
T Consensus 33 mA~LR~~Y~g~~~~~~llea~mCg~la~~~~~~l~ 67 (107)
T TIGR01594 33 IAYLRIRYMGGKFKRKLIDALMCAAIALVAASALD 67 (107)
T ss_pred HHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777888899999998888887765554443
No 60
>PF01024 Colicin: Colicin pore forming domain; InterPro: IPR000293 Colicins are plasmid-encoded polypeptide toxins produced by and active against Escherichia coli and closely related bacteria. Colicins are released into the environment to reduce competition from other bacterial strains. Colicins bind to outer membrane receptors, using them to translocate to the cytoplasm or cytoplasmic membrane, where they exert their cytotoxic effect, including depolarisation of the cytoplasmic membrane, DNase activity, RNase activity, or inhibition of murein synthesis. Channel-forming colicins (colicins A, B, E1, Ia, Ib, and N) are transmembrane proteins that depolarize the cytoplasmic membrane, leading to dissipation of cellular energy []. These colicins contain at least three domains: an N-terminal translocation domain responsible for movement across the outer membrane and periplasmic space; a central domain responsible for receptor recognition; and a C-terminal cytotoxic domain responsible for channel formation in the cytoplasmic membrane []. This entry represents the C-terminal cytotoxic domain, which has a globin-like fold with additional helices at either end.; GO: 0019835 cytolysis, 0050829 defense response to Gram-negative bacterium, 0016021 integral to membrane; PDB: 2I88_A 1CII_A 1RH1_A 1COL_B 1A87_A 3FEW_X.
Probab=27.63 E-value=1.6e+02 Score=22.97 Aligned_cols=21 Identities=5% Similarity=-0.042 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 037637 72 RSSIALVAAILSMVMLGIAGA 92 (136)
Q Consensus 72 ~~~~s~~~~~~aL~~lG~~~a 92 (136)
.+.++.+++.+++++++++.+
T Consensus 136 s~~~~~~As~v~a~~fs~~~~ 156 (187)
T PF01024_consen 136 SLAAGGAASAVAAFAFSFILG 156 (187)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777777777666
No 61
>PF11283 DUF3084: Protein of unknown function (DUF3084); InterPro: IPR021435 This bacterial family of proteins has no known function.
Probab=27.04 E-value=1.5e+02 Score=20.02 Aligned_cols=29 Identities=10% Similarity=0.342 Sum_probs=23.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037637 98 PTMRSCVRVVVGGFVAVPIRWGKVKIIEN 126 (136)
Q Consensus 98 ~~~rs~~~~l~~G~~aa~vty~iG~l~~~ 126 (136)
|...+.+-+++.|.+-++.|+.+=.+.+.
T Consensus 39 Pr~Ta~lVti~TG~~Is~~tl~vl~~~s~ 67 (79)
T PF11283_consen 39 PRYTAILVTILTGVLISALTLGVLFLLSE 67 (79)
T ss_pred CccceeehHHHHhHHHHHHHHHHHHHHhH
Confidence 55567788899999999999888776654
No 62
>PF04956 TrbC: TrbC/VIRB2 family; InterPro: IPR007039 Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure[]. This family also contains several VirB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species [].
Probab=26.54 E-value=2e+02 Score=19.03 Aligned_cols=31 Identities=16% Similarity=0.067 Sum_probs=20.6
Q ss_pred hHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 037637 91 GAALGKVPTMRSCVRVVVGGFVAVPIRWGKVK 122 (136)
Q Consensus 91 ~a~~s~~~~~rs~~~~l~~G~~aa~vty~iG~ 122 (136)
....++.+ ++...+.++.+.+....+..+++
T Consensus 68 ~~~~g~~~-~~~~~~~v~G~~iv~~A~~iv~~ 98 (99)
T PF04956_consen 68 MMMFGRQS-WRWFIGVVIGIIIVFGAPSIVSW 98 (99)
T ss_pred HHHhCCcC-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455556 78888877777777766665543
No 63
>COG4129 Predicted membrane protein [Function unknown]
Probab=26.54 E-value=3.9e+02 Score=22.49 Aligned_cols=38 Identities=8% Similarity=0.071 Sum_probs=29.8
Q ss_pred CCCcccHHHHHHHHHHHHHhhhhhhhHHHhcccchhhH
Q 037637 35 RTAVPSAIQIAVASSLAFLFWGKVPMLAAGFIKDHHLR 72 (136)
Q Consensus 35 ~~~~~~P~~aal~s~~sF~~Gg~vPllp~~~~~~~~~~ 72 (136)
.++..+-.|.|.--..+..+|+++-.+-+.+..+..+.
T Consensus 47 ~~t~~~s~~~~~~r~~g~~iG~~~a~l~~~l~g~~~~~ 84 (332)
T COG4129 47 SPTIKRSLKRALQRLLGNALGAILAVLFFLLFGQNPIA 84 (332)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHH
Confidence 34557889999999999999999999988876444443
No 64
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=26.51 E-value=4.3e+02 Score=22.94 Aligned_cols=77 Identities=8% Similarity=-0.005 Sum_probs=46.2
Q ss_pred cccHHHHHHHHHHHHHhhh--hhhhHHHhcccchh----hHHHHHHHHHHHHHHHHHHHhHHhcCCCchhHHHHHHHHHH
Q 037637 38 VPSAIQIAVASSLAFLFWG--KVPMLAAGFIKDHH----LRSSIALVAAILSMVMLGIAGAALGKVPTMRSCVRVVVGGF 111 (136)
Q Consensus 38 ~~~P~~aal~s~~sF~~Gg--~vPllp~~~~~~~~----~~~~~s~~~~~~aL~~lG~~~a~~s~~~~~rs~~~~l~~G~ 111 (136)
.-|||.++...++||.+-+ +-|++|++.. .+. ..+.-+ .-=+.|.+.-.+.+.+...+--.--+|..+.++
T Consensus 352 ~lsPy~~m~~lGLsysllAcslWP~va~~vp-E~qLGTaygf~qs--IqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~ 428 (459)
T KOG4686|consen 352 FLSPYTSMTFLGLSYSLLACSLWPCVASLVP-EEQLGTAYGFIQS--IQNLGLAFIPIIAGFIADGDGSYDNLEAFFLII 428 (459)
T ss_pred hccHHHHHHHHhhhHHHHHHHHhhhhhhhCC-HHHhcchHHHHHH--HHhhhhhHHhhhhheeecCCCchhhHHHHHHHH
Confidence 4689999999999997655 5899998864 322 223222 223445555555555544433344566666666
Q ss_pred HHHHHH
Q 037637 112 VAVPIR 117 (136)
Q Consensus 112 ~aa~vt 117 (136)
+.++.+
T Consensus 429 ~~~aL~ 434 (459)
T KOG4686|consen 429 GLMALT 434 (459)
T ss_pred HHHHHH
Confidence 555443
No 65
>PF13770 DUF4169: Domain of unknown function (DUF4169)
Probab=26.05 E-value=75 Score=19.94 Aligned_cols=20 Identities=15% Similarity=0.001 Sum_probs=14.7
Q ss_pred hhhhhHHHHHHHHHHHHHhh
Q 037637 11 VHTQVDTINFQAERDFKMER 30 (136)
Q Consensus 11 ~~sq~d~~~ae~~re~~e~~ 30 (136)
+|+|++..+++.++.++.++
T Consensus 32 tKaer~~~~~~~~r~~~~LD 51 (55)
T PF13770_consen 32 TKAERQLDRARAERAKRDLD 51 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHh
Confidence 57888888888777776653
No 66
>PF05106 Phage_holin_3: Phage holin family (Lysis protein S); InterPro: IPR006481 This entry is represented by the Bacteriophage lambda, GpS. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=25.86 E-value=2.3e+02 Score=19.53 Aligned_cols=34 Identities=18% Similarity=0.113 Sum_probs=24.5
Q ss_pred HHHhHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q 037637 88 GIAGAALGKVPTMRSCVRVVVGGFVAVPIRWGKV 121 (136)
Q Consensus 88 G~~~a~~s~~~~~rs~~~~l~~G~~aa~vty~iG 121 (136)
..+.....|.+++|..++-++.|.+|..+.-.+.
T Consensus 32 A~LR~~Y~g~~~~r~llea~lCg~lal~~~~~L~ 65 (100)
T PF05106_consen 32 ALLRGAYGGGSWRRRLLEALLCGLLALFARSLLE 65 (100)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555889999988888888877766665553
No 67
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=25.32 E-value=2.7e+02 Score=20.34 Aligned_cols=22 Identities=14% Similarity=0.079 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 037637 105 RVVVGGFVAVPIRWGKVKIIEN 126 (136)
Q Consensus 105 ~~l~~G~~aa~vty~iG~l~~~ 126 (136)
-++.=+.++..+-|.++..+..
T Consensus 61 AtiaD~~La~~~iW~~~~~~~~ 82 (136)
T PF10710_consen 61 ATIADFGLAFLVIWLMGYILTG 82 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455555666666665543
No 68
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=25.10 E-value=1.4e+02 Score=20.86 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHh
Q 037637 73 SSIALVAAILSMVMLGIAGAAL 94 (136)
Q Consensus 73 ~~~s~~~~~~aL~~lG~~~a~~ 94 (136)
.+...+-|.+..++++.+...+
T Consensus 75 wilGlvgTi~gsliia~lr~~f 96 (98)
T PF11166_consen 75 WILGLVGTIFGSLIIALLRTIF 96 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4445556666666666655543
No 69
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=24.99 E-value=4.3e+02 Score=22.42 Aligned_cols=83 Identities=13% Similarity=0.021 Sum_probs=42.6
Q ss_pred CceecchhhhhhhhhHHHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHhhhhhhhHHHhcccchhhHHHHHHHHH
Q 037637 1 MRIATSVLVSVHTQVDTINFQAERDFKMERSVDQRTAVPSAIQIAVASSLAFLFWGKVPMLAAGFIKDHHLRSSIALVAA 80 (136)
Q Consensus 1 ~SMa~GeYlS~~sq~d~~~ae~~re~~e~~lGi~~~~~~~P~~aal~s~~sF~~Gg~vPllp~~~~~~~~~~~~~s~~~~ 80 (136)
+||++|+|+.--.=.|.+..+.+- +++-+|.+.++...+.|.--|.-==++.+.. .. ........+.
T Consensus 243 ls~ilGAFlaGl~ls~~~~~~~~l-----------~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~-~~-~~~l~~~~~~ 309 (397)
T COG0475 243 LSMILGAFLAGLLLSESEYRKHEL-----------EEKIEPFGDGLFIPLFFISVGMSLDLGVLLE-NL-LLILLLVALA 309 (397)
T ss_pred hhHHHHHHHHHHHhcccccchHHH-----------HHHHHhHHhHHHHHHHHHHhhHHcCHHHHhc-cH-HHHHHHHHHH
Confidence 478888888744333322211001 1124788888776666665555433333322 11 1223333444
Q ss_pred HHHHHHHHHHhHHhcC
Q 037637 81 ILSMVMLGIAGAALGK 96 (136)
Q Consensus 81 ~~aL~~lG~~~a~~s~ 96 (136)
.+.=++..++.+|..|
T Consensus 310 i~~K~~~~~~~~~~~g 325 (397)
T COG0475 310 ILGKILGAYLAARLLG 325 (397)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 4455566777788877
No 70
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.50 E-value=34 Score=28.61 Aligned_cols=12 Identities=17% Similarity=0.224 Sum_probs=6.6
Q ss_pred hhhhhHHHHHHH
Q 037637 11 VHTQVDTINFQA 22 (136)
Q Consensus 11 ~~sq~d~~~ae~ 22 (136)
.+.|+|.++.|.
T Consensus 63 ~~kq~eL~~rqe 74 (313)
T KOG3088|consen 63 AKKQAELLKKQE 74 (313)
T ss_pred HHHHHHHHHHHH
Confidence 346666665443
No 71
>PF08690 GET2: GET complex subunit GET2; InterPro: IPR014802 This family corresponds to the GET complex subunit GET2. The GET complex is involved in the retrieval of ER resident proteins from the Golgi []. ; PDB: 3SJD_D 3ZS9_C.
Probab=23.60 E-value=61 Score=26.95 Aligned_cols=13 Identities=8% Similarity=0.100 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHH
Q 037637 16 DTINFQAERDFKM 28 (136)
Q Consensus 16 d~~~ae~~re~~e 28 (136)
|.|++.++|||||
T Consensus 4 ~aEkrRLrRERRe 16 (302)
T PF08690_consen 4 EAEKRRLRRERRE 16 (302)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5677788888877
No 72
>PRK15050 2-aminoethylphosphonate transport system permease PhnU; Provisional
Probab=22.66 E-value=3.8e+02 Score=21.23 Aligned_cols=24 Identities=8% Similarity=0.004 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHh
Q 037637 41 AIQIAVASSLAFLFWGKVPMLAAG 64 (136)
Q Consensus 41 P~~aal~s~~sF~~Gg~vPllp~~ 64 (136)
||.--....+.+.+.-++|++..+
T Consensus 24 ~~~~~~~~~~~~~~~~~~Pl~~~l 47 (296)
T PRK15050 24 PLLWLLLPLLVLAPLVVYPLVRVV 47 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 454444444445566667776554
No 73
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=22.28 E-value=2e+02 Score=27.25 Aligned_cols=51 Identities=10% Similarity=-0.030 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHhHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037637 76 ALVAAILSMVMLGIAGAALGKVPTMRSCVRVVVGGFVAVPIRWGKVKIIEN 126 (136)
Q Consensus 76 s~~~~~~aL~~lG~~~a~~s~~~~~rs~~~~l~~G~~aa~vty~iG~l~~~ 126 (136)
+++.+++.-.+.|.+.-.-.+....+.+.+-+.+=+....+...+|..+++
T Consensus 172 ~~i~~~~~y~~~~~~~~~~~~~~~~~~a~~hL~~L~~~~~l~~a~~y~L~r 222 (774)
T PF03699_consen 172 SLIATLVVYYLFGGIRLQGRGPRFSRAARRHLSILLALFFLLKAVGYWLDR 222 (774)
T ss_pred HHHHHHHHHHHhccccccCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334344444322223344556655554444444555566666654
No 74
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=21.82 E-value=4e+02 Score=23.14 Aligned_cols=31 Identities=23% Similarity=0.092 Sum_probs=21.1
Q ss_pred CCcccHHHHHHHHHHHHHhhhhhhhHHHhccc
Q 037637 36 TAVPSAIQIAVASSLAFLFWGKVPMLAAGFIK 67 (136)
Q Consensus 36 ~~~~~P~~aal~s~~sF~~Gg~vPllp~~~~~ 67 (136)
.+.+||-|+++ -.++=.=|-++|-+-|++.+
T Consensus 86 GeL~~~r~a~l-Pi~AAlGGmivPAliy~~~n 116 (388)
T PRK09561 86 GSLASRRQAAL-PVIAAIGGMLVPALIYLLFN 116 (388)
T ss_pred CCCCChHHHHH-HHHHHHhchHHHHHHHhhee
Confidence 45556656555 55555667789999998763
No 75
>COG5393 Predicted membrane protein [Function unknown]
Probab=21.80 E-value=3.3e+02 Score=19.95 Aligned_cols=64 Identities=16% Similarity=0.266 Sum_probs=33.1
Q ss_pred cccHHHHHHHHH--HHHHhhhhhhhHHHhcc-cchhhHHHHHHHHHHHHHHHHHHHhHHhcCCCchhH
Q 037637 38 VPSAIQIAVASS--LAFLFWGKVPMLAAGFI-KDHHLRSSIALVAAILSMVMLGIAGAALGKVPTMRS 102 (136)
Q Consensus 38 ~~~P~~aal~s~--~sF~~Gg~vPllp~~~~-~~~~~~~~~s~~~~~~aL~~lG~~~a~~s~~~~~rs 102 (136)
+.|-.+..+.-+ ++|..++++.+..-++. .++.+++-. .+.+.+.|.++|.+...++=..-.+|
T Consensus 44 Kanll~lllm~gLtl~fa~~~lmsL~vLvi~~f~~tyRl~a-~~a~~~vl~vl~~i~ciW~lrks~~s 110 (131)
T COG5393 44 KANLLQLLLMAGLTLLFAAFGLMSLMVLVIWAFDPTYRLNA-MIATTAVLLVLALIGCIWTLRKSRKS 110 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 356666665443 34555555555443321 134455533 35566667777777766654333333
No 76
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=21.54 E-value=2.2e+02 Score=24.94 Aligned_cols=31 Identities=23% Similarity=0.050 Sum_probs=21.1
Q ss_pred CCcccHHHHHHHHHHHHHhhhhhhhHHHhccc
Q 037637 36 TAVPSAIQIAVASSLAFLFWGKVPMLAAGFIK 67 (136)
Q Consensus 36 ~~~~~P~~aal~s~~sF~~Gg~vPllp~~~~~ 67 (136)
.+.+||-|+++ -.++=.=|-++|-+-|++..
T Consensus 90 GeLs~~r~a~l-PiiAAlGGmivPAlIy~~~n 120 (423)
T PRK14855 90 GELSSPRQAAL-AVVAALGGMLVPAALYTALN 120 (423)
T ss_pred ccCCChHHHHH-HHHHHHhchHHHHHHHheee
Confidence 45555555554 55666678889999998753
No 77
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=21.54 E-value=2.1e+02 Score=25.23 Aligned_cols=31 Identities=19% Similarity=0.033 Sum_probs=21.3
Q ss_pred CCcccHHHHHHHHHHHHHhhhhhhhHHHhccc
Q 037637 36 TAVPSAIQIAVASSLAFLFWGKVPMLAAGFIK 67 (136)
Q Consensus 36 ~~~~~P~~aal~s~~sF~~Gg~vPllp~~~~~ 67 (136)
.+.+||-|+++ -.++=.=|-++|-+-|++..
T Consensus 95 GeLs~~rka~l-Pi~AAlGGmivPAlIY~~~n 125 (438)
T PRK14856 95 GELSSFKKASF-PVIAALGGMIAPGLIYFFLN 125 (438)
T ss_pred ccCCChHHHHH-HHHHHHhccHHHHHHHhhee
Confidence 45556655555 55555677889999998763
No 78
>PRK03612 spermidine synthase; Provisional
Probab=21.45 E-value=5.7e+02 Score=22.56 Aligned_cols=18 Identities=17% Similarity=0.032 Sum_probs=9.5
Q ss_pred cHHHHHHHHHHHHHhhhh
Q 037637 40 SAIQIAVASSLAFLFWGK 57 (136)
Q Consensus 40 ~P~~aal~s~~sF~~Gg~ 57 (136)
++.+..+.-...|..|+.
T Consensus 12 ~~~~~~~l~~~~f~sg~~ 29 (521)
T PRK03612 12 SPRDRALLLAAVFVCAAC 29 (521)
T ss_pred ccchhHHHHHHHHHHHHH
Confidence 444555555555555554
No 79
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=21.41 E-value=3.8e+02 Score=20.53 Aligned_cols=26 Identities=12% Similarity=0.066 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHhcc
Q 037637 41 AIQIAVASSLAFLFWGKVPMLAAGFI 66 (136)
Q Consensus 41 P~~aal~s~~sF~~Gg~vPllp~~~~ 66 (136)
-|-++=.+...|++-..+.++...+.
T Consensus 69 D~VDsR~~i~e~fmP~alv~lv~~~v 94 (170)
T PF11241_consen 69 DYVDSRRNIGEFFMPVALVLLVLSFV 94 (170)
T ss_pred hhhhcccchHHHHHHHHHHHHHHHHH
Confidence 44555566667766666666655555
No 80
>PF04279 IspA: Intracellular septation protein A ; InterPro: IPR006008 Intracellular septation protein A is a family of proteins which are essential for both normal cell division and bacterial virulence and are believed to play a role in the septation process [].; GO: 0016021 integral to membrane
Probab=21.25 E-value=3.7e+02 Score=20.31 Aligned_cols=10 Identities=10% Similarity=0.039 Sum_probs=6.3
Q ss_pred hhhhHHHhcc
Q 037637 57 KVPMLAAGFI 66 (136)
Q Consensus 57 ~vPllp~~~~ 66 (136)
+.|++.|+..
T Consensus 7 ~~P~i~Ffv~ 16 (176)
T PF04279_consen 7 FGPLILFFVV 16 (176)
T ss_pred HHHHHHHHHH
Confidence 4577777654
No 81
>PRK00259 intracellular septation protein A; Reviewed
Probab=20.84 E-value=3.9e+02 Score=20.40 Aligned_cols=10 Identities=10% Similarity=-0.001 Sum_probs=5.9
Q ss_pred hhhhHHHhcc
Q 037637 57 KVPMLAAGFI 66 (136)
Q Consensus 57 ~vPllp~~~~ 66 (136)
+.|++.|+..
T Consensus 7 ~~P~i~Ffv~ 16 (179)
T PRK00259 7 FLPLILFFAA 16 (179)
T ss_pred HHHHHHHHHH
Confidence 4566666654
No 82
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=20.81 E-value=6.9e+02 Score=23.27 Aligned_cols=50 Identities=14% Similarity=0.202 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHhcccchhhHHHHHHHHHHHHHHHHHHHhHHh
Q 037637 41 AIQIAVASSLAFLFWGKVPMLAAGFIKDHHLRSSIALVAAILSMVMLGIAGAAL 94 (136)
Q Consensus 41 P~~aal~s~~sF~~Gg~vPllp~~~~~~~~~~~~~s~~~~~~aL~~lG~~~a~~ 94 (136)
-+++-+.+.+.|.++++.=-+ . . |+.+.+....+++...+.++|++.-|.
T Consensus 56 R~~~l~~t~~~f~i~sl~v~l--l-~-~~p~lf~~~l~~~tf~~~mlga~G~Ry 105 (704)
T TIGR01666 56 RLKNVIFTLICFSIASFSVEL--L-F-GKPWLFAVGLTVSTFGFIMLGAVGQRY 105 (704)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--H-h-cCcHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 367777888888777766222 2 2 455677777777777788888876644
No 83
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=20.79 E-value=2.2e+02 Score=19.05 Aligned_cols=17 Identities=18% Similarity=0.268 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHhH
Q 037637 76 ALVAAILSMVMLGIAGA 92 (136)
Q Consensus 76 s~~~~~~aL~~lG~~~a 92 (136)
.+++..+..+++|.+.+
T Consensus 11 ~l~~~~l~~~lvG~~~g 27 (90)
T PF11808_consen 11 RLLLLLLAAALVGWLFG 27 (90)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33333344444444443
No 84
>PRK11469 hypothetical protein; Provisional
Probab=20.40 E-value=4e+02 Score=20.34 Aligned_cols=20 Identities=25% Similarity=0.204 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhHHhcC
Q 037637 77 LVAAILSMVMLGIAGAALGK 96 (136)
Q Consensus 77 ~~~~~~aL~~lG~~~a~~s~ 96 (136)
+.++...+...|...++.-+
T Consensus 140 ig~~s~~~~~~G~~lG~~~g 159 (188)
T PRK11469 140 IGCATLIMSTLGMMVGRFIG 159 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444445566766665443
Done!