Query 037637
Match_columns 136
No_of_seqs 129 out of 850
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 04:14:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037637.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037637hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d31_C Sulfate/molybdate ABC t 33.0 1.3E+02 0.0044 22.6 6.7 31 95-125 76-106 (295)
2 3arc_I Photosystem II reaction 31.2 55 0.0019 18.2 3.1 26 73-98 7-32 (38)
3 2kv9_B Integrin beta-3; platel 28.4 95 0.0033 19.8 4.3 36 9-50 32-68 (75)
4 2h88_D Succinate dehydrogenase 26.6 1.4E+02 0.0049 19.7 7.7 14 55-68 18-31 (103)
5 1ytz_T Troponin T; muscle, THI 26.5 51 0.0017 22.3 2.9 24 1-25 1-24 (107)
6 4dve_A Biotin transporter BIOY 25.8 2E+02 0.0069 21.2 8.4 77 42-123 64-149 (198)
7 1s4x_A Integrin beta-3; cell a 24.0 79 0.0027 19.6 3.2 36 9-50 24-60 (67)
8 1a92_A Delta antigen; leucine 19.7 7.8 0.00027 23.0 -2.0 35 6-44 7-41 (50)
9 3sjd_D Golgi to ER traffic pro 18.1 72 0.0025 18.5 1.9 13 16-28 16-28 (46)
10 3jtz_A Integrase; four strande 17.5 69 0.0024 20.5 2.0 31 3-37 51-83 (88)
No 1
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1
Probab=32.96 E-value=1.3e+02 Score=22.58 Aligned_cols=31 Identities=16% Similarity=0.111 Sum_probs=14.0
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 037637 95 GKVPTMRSCVRVVVGGFVAVPIRWGKVKIIE 125 (136)
Q Consensus 95 s~~~~~rs~~~~l~~G~~aa~vty~iG~l~~ 125 (136)
++...+++...++....++..++..+|..++
T Consensus 76 ~~~~~~~~l~nTl~~~~~~~~l~~~lg~~~a 106 (295)
T 3d31_C 76 GNRSVISSIFLSLYAGFLATLLALLLGAPTG 106 (295)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443
No 2
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=31.21 E-value=55 Score=18.23 Aligned_cols=26 Identities=12% Similarity=0.296 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhcCCC
Q 037637 73 SSIALVAAILSMVMLGIAGAALGKVP 98 (136)
Q Consensus 73 ~~~s~~~~~~aL~~lG~~~a~~s~~~ 98 (136)
+.-+++.-.++||++|.+..-=++.|
T Consensus 7 ~Vy~vV~ffvsLFiFGfLsnDP~RNP 32 (38)
T 3arc_I 7 TVYIVVTFFVLLFVFGFLSGDPARNP 32 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHTTGGGCSS
T ss_pred eehhHHHHHHHHHHccccCCCCCCCC
Confidence 34466777888999999877555443
No 3
>2kv9_B Integrin beta-3; platelet glycoprotein IIIA, GPIIIA, C adhesion; NMR {Homo sapiens}
Probab=28.37 E-value=95 Score=19.76 Aligned_cols=36 Identities=14% Similarity=0.200 Sum_probs=21.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhcCCCCCCcccH-HHHHHHHHH
Q 037637 9 VSVHTQVDTINFQAERDFKMERSVDQRTAVPSA-IQIAVASSL 50 (136)
Q Consensus 9 lS~~sq~d~~~ae~~re~~e~~lGi~~~~~~~P-~~aal~s~~ 50 (136)
+..+..||+.+-|.+|++..- +...|| +|++.+++-
T Consensus 32 ~~i~DrREyaKFEkEr~~akw------~~~eNPLYk~atttf~ 68 (75)
T 2kv9_B 32 ITIHDRKEFAKFEEERARAKW------DTANNPLYKEATSTFT 68 (75)
T ss_dssp HHHHHCHHHHHHHHHHHHGGG------SSTTSHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHhcc------ccccCCCccCCccccc
Confidence 455667788777766665331 133577 677777654
No 4
>2h88_D Succinate dehydrogenase cytochrome B, small subun; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_D* 1yq3_D* 2fbw_D* 2h89_D* 2wqy_D* 1zoy_D* 1zp0_D* 3abv_D* 3ae1_D* 3ae2_D* 3ae3_D* 3ae4_D* 3ae5_D* 3ae6_D* 3ae7_D* 3ae8_D* 3ae9_D* 3aea_D* 3aeb_D* 3aec_D* ...
Probab=26.57 E-value=1.4e+02 Score=19.70 Aligned_cols=14 Identities=14% Similarity=0.126 Sum_probs=10.5
Q ss_pred hhhhhhHHHhcccc
Q 037637 55 WGKVPMLAAGFIKD 68 (136)
Q Consensus 55 Gg~vPllp~~~~~~ 68 (136)
-+++||+|+.+..+
T Consensus 18 vallpL~p~~~~~~ 31 (103)
T 2h88_D 18 ALLLGLLPAAYLYP 31 (103)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcC
Confidence 46789999887644
No 5
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=26.46 E-value=51 Score=22.34 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=13.7
Q ss_pred CceecchhhhhhhhhHHHHHHHHHH
Q 037637 1 MRIATSVLVSVHTQVDTINFQAERD 25 (136)
Q Consensus 1 ~SMa~GeYlS~~sq~d~~~ae~~re 25 (136)
++|..|.|+ .+.|+.--+.+.++|
T Consensus 1 m~~~~g~~~-~k~e~~~~k~q~e~E 24 (107)
T 1ytz_T 1 MGASYSSYL-AKADQKRGKKQTARE 24 (107)
T ss_dssp ---CCTTHH-HHHHHHHHHHHHHHH
T ss_pred CCcchhhHH-HHHHhcccHHHHHHH
Confidence 467899999 456655445555554
No 6
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=25.82 E-value=2e+02 Score=21.22 Aligned_cols=77 Identities=14% Similarity=-0.044 Sum_probs=39.9
Q ss_pred HHHHHHHHHHH-Hhhhh-hhhHHH-------hcccchhhHHHHHHHHHHHHHHHHHHHhHHhcCCCchhHHHHHHHHHHH
Q 037637 42 IQIAVASSLAF-LFWGK-VPMLAA-------GFIKDHHLRSSIALVAAILSMVMLGIAGAALGKVPTMRSCVRVVVGGFV 112 (136)
Q Consensus 42 ~~aal~s~~sF-~~Gg~-vPllp~-------~~~~~~~~~~~~s~~~~~~aL~~lG~~~a~~s~~~~~rs~~~~l~~G~~ 112 (136)
+|.|..+-+.| .+|.+ +|+.+= ++. ++-...+....+ -++.|.+.-+..+.+..+...+.++.-.+
T Consensus 64 ~r~G~lsv~lYlllG~~GlPVFagg~gG~~~l~g--PTgGYLiGF~~a---A~v~G~l~~~~~~~~~~~~~~~~~~~~l~ 138 (198)
T 4dve_A 64 PKYGTISVGAFLALALIGLPVLTGGNGGAASFLG--PSGGYRIAWLFT---PFLIGFFLKKLKITTSQNWFGELIIVLLF 138 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCBTTTBCCSGGGGS--TTHHHHHHHHHH---HHHHHHHHHHTTGGGSSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCccccCCCCchhHHhc--chhHHHHHHHHH---HHHHHHHHHHccccchhhHHHHHHHHHHH
Confidence 34454455555 44544 566532 222 223444444332 35667777776554444444455555555
Q ss_pred HHHHHHHHHHH
Q 037637 113 AVPIRWGKVKI 123 (136)
Q Consensus 113 aa~vty~iG~l 123 (136)
...+.|.+|.+
T Consensus 139 G~~~iy~~G~~ 149 (198)
T 4dve_A 139 GVIFVDFVGAI 149 (198)
T ss_dssp HTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66677777754
No 7
>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2ljd_A* 2lje_A* 2ljf_A*
Probab=23.98 E-value=79 Score=19.64 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=20.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhcCCCCCCcccH-HHHHHHHHH
Q 037637 9 VSVHTQVDTINFQAERDFKMERSVDQRTAVPSA-IQIAVASSL 50 (136)
Q Consensus 9 lS~~sq~d~~~ae~~re~~e~~lGi~~~~~~~P-~~aal~s~~ 50 (136)
+..+..||+.+-|.+|++.. -+...|| +|++.++|-
T Consensus 24 ~~i~DrrEyakFE~Er~~ak------w~~~~NPLYk~atttf~ 60 (67)
T 1s4x_A 24 ITIHDRKEFAKFEEERARAK------WDTANNPLYKEATSTFT 60 (67)
T ss_dssp HHHHHHHHHHHHHHHHTTTT------TCSSSSTHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHcc------ccccCCCCccCCccccc
Confidence 44556677766666555422 1233577 667676654
No 8
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=19.70 E-value=7.8 Score=22.99 Aligned_cols=35 Identities=9% Similarity=-0.028 Sum_probs=15.1
Q ss_pred chhhhhhhhhHHHHHHHHHHHHHhhcCCCCCCcccHHHH
Q 037637 6 SVLVSVHTQVDTINFQAERDFKMERSVDQRTAVPSAIQI 44 (136)
Q Consensus 6 GeYlS~~sq~d~~~ae~~re~~e~~lGi~~~~~~~P~~a 44 (136)
+.+++.+-..|-.+.++++.++.+. .-+++|||--
T Consensus 7 eqWv~~Rkk~eeler~lrk~kk~iK----klEdeNPWLG 41 (50)
T 1a92_A 7 EQWVSGRKKLEELERDLRKLKKKIK----KLEEDNPWLG 41 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----hhhccCCchh
Confidence 4455555444433333333333221 2234678753
No 9
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=18.09 E-value=72 Score=18.45 Aligned_cols=13 Identities=8% Similarity=0.043 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHH
Q 037637 16 DTINFQAERDFKM 28 (136)
Q Consensus 16 d~~~ae~~re~~e 28 (136)
+.+++.+.||+++
T Consensus 16 a~EkaRLrRERR~ 28 (46)
T 3sjd_D 16 EAEKRRLLRERRQ 28 (46)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4466777777776
No 10
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=17.49 E-value=69 Score=20.49 Aligned_cols=31 Identities=16% Similarity=-0.042 Sum_probs=12.9
Q ss_pred eecchhhhhhhhhHHHHHHH--HHHHHHhhcCCCCCC
Q 037637 3 IATSVLVSVHTQVDTINFQA--ERDFKMERSVDQRTA 37 (136)
Q Consensus 3 Ma~GeYlS~~sq~d~~~ae~--~re~~e~~lGi~~~~ 37 (136)
|.+|.|=.+ ...+|.. ++-+..+..|++|+.
T Consensus 51 ~~LG~yp~~----sL~~AR~~a~~~r~~l~~Gidp~~ 83 (88)
T 3jtz_A 51 IALGAYPAI----SLSDARQQREGIRKMLALNINLEH 83 (88)
T ss_dssp EEEEETTTS----CHHHHHHHHHHHHHHHTCC-----
T ss_pred EEeECCCCC----CHHHHHHHHHHHHHHHHcCCCchh
Confidence 678888332 2223322 222345678888775
Done!