BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037639
(361 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AQU|A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|B Chain B, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|C Chain C, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|D Chain D, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
Length = 356
Score = 435 bits (1118), Expect = e-122, Method: Compositional matrix adjust.
Identities = 212/339 (62%), Positives = 262/339 (77%), Gaps = 6/339 (1%)
Query: 25 QNAVKAAYWFSGSNFPVADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQ 84
Q VKA+YWF S FPV DIDS LFTHLFCAFADL+SQ QVTVSS NQ FS+FT+TVQ
Sbjct: 2 QTVVKASYWFPASEFPVTDIDSSLFTHLFCAFADLNSQTNQVTVSSANQPKFSTFTQTVQ 61
Query: 85 QKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN 144
++NP+VK LLSIGGG A K ++A+MAS SRKSFIDSSI +ARS FHGLD+DWEYP +
Sbjct: 62 RRNPSVKTLLSIGGGIADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYPSS 121
Query: 145 A-QMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTN 203
A +M++FGTLL EWRSAV AEA SSGKP LLL AAV YS NY+ + P SA+++SLDW N
Sbjct: 122 ATEMTNFGTLLREWRSAVVAEASSSGKPRLLLAAAVFYSNNYYSVLYPVSAVASSLDWVN 181
Query: 204 VMAYDFFYNDDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQSGLSPKKIVLGFPFFGH 263
+MAYDF+ SR+TGPPAALF P + SGD+G R+WIQ+GL KK VLGFP++G+
Sbjct: 182 LMAYDFY---GPGWSRVTGPPAALFDPSNAGPSGDAGTRSWIQAGLPAKKAVLGFPYYGY 238
Query: 264 SLQLANANNHGFWAPTSG--VVNGGTMSYKEIRQFIMSTNATKVFNATVVSDYCYSGTTW 321
+ +L NAN+H ++APT+G + G++ Y +IR+FI+ AT V+N+TVV DYCY+GT W
Sbjct: 239 AWRLTNANSHSYYAPTTGAAISPDGSIGYGQIRKFIVDNGATTVYNSTVVGDYCYAGTNW 298
Query: 322 IGYDDTQSVNTKVKYAKDNGLLGYFAWQISQDDNWILSR 360
IGYDD QS+ TKV+YAK GLLGYF+W + DDN LSR
Sbjct: 299 IGYDDNQSIVTKVRYAKQRGLLGYFSWHVGADDNSGLSR 337
>pdb|3ALF|A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana
Tobaccum
Length = 353
Score = 365 bits (936), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/339 (55%), Positives = 233/339 (68%), Gaps = 9/339 (2%)
Query: 28 VKAAYWFSGSNFPVADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKN 87
VK YWF S + +IDS LFTHLFCAFADL+ Q Q+ +S ENQ F FT TVQ+KN
Sbjct: 4 VKGGYWFKDSGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQDSFRQFTSTVQRKN 63
Query: 88 PAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYP-DNAQ 146
P+VK LSI GG A+ ++ MA Q SRKSFIDSSI LAR L FHGLD+DWEYP A
Sbjct: 64 PSVKTFLSIAGGRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWEYPLSAAD 123
Query: 147 MSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMA 206
M++ GTLL EWR+A+ EAR+SG+ ALLLTAAVS S G P +++ +LDW N+MA
Sbjct: 124 MTNLGTLLNEWRTAINTEARNSGRAALLLTAAVSNSPRVNGLNYPVESLARNLDWINLMA 183
Query: 207 YDFFYNDDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQSGLSPKKIVLGFPFFGHSLQ 266
YD FY + + S+ T A LF P + VSG GI AWIQ+G+ KK+VLG PF+G++ +
Sbjct: 184 YD-FYGPNWSPSQ-TNSHAQLFDP-VNHVSGSDGINAWIQAGVPTKKLVLGIPFYGYAWR 240
Query: 267 LANANNHGFWAPTS-----GVVNGGTMSYKEIRQFIMSTNATKVFNATVVSDYCYSGTTW 321
L NAN HG AP + G V+ G+M+Y IR +I+ + AT V+NAT+V DYCYSG+ W
Sbjct: 241 LVNANIHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVESRATTVYNATIVGDYCYSGSNW 300
Query: 322 IGYDDTQSVNTKVKYAKDNGLLGYFAWQISQDDNWILSR 360
I YDDTQ+V KV Y K GLLGYFAW ++ D NW LSR
Sbjct: 301 ISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGDQNWGLSR 339
>pdb|3ALG|A Chain A, Crystal Structure Of Class V Chitinase (E115q Mutant) From
Nicotiana Tobaccum In Complex With Nag4
Length = 353
Score = 363 bits (933), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/339 (54%), Positives = 233/339 (68%), Gaps = 9/339 (2%)
Query: 28 VKAAYWFSGSNFPVADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKN 87
VK YWF S + +IDS LFTHLFCAFADL+ Q Q+ +S ENQ F FT TVQ+KN
Sbjct: 4 VKGGYWFKDSGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQDSFRQFTSTVQRKN 63
Query: 88 PAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYP-DNAQ 146
P+VK LSI GG A+ ++ MA Q SRKSFIDSSI LAR L FHGLD+DW+YP A
Sbjct: 64 PSVKTFLSIAGGRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWQYPLSAAD 123
Query: 147 MSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMA 206
M++ GTLL EWR+A+ EAR+SG+ ALLLTAAVS S G P +++ +LDW N+MA
Sbjct: 124 MTNLGTLLNEWRTAINTEARNSGRAALLLTAAVSNSPRVNGLNYPVESLARNLDWINLMA 183
Query: 207 YDFFYNDDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQSGLSPKKIVLGFPFFGHSLQ 266
YD FY + + S+ T A LF P + VSG GI AWIQ+G+ KK+VLG PF+G++ +
Sbjct: 184 YD-FYGPNWSPSQ-TNSHAQLFDP-VNHVSGSDGINAWIQAGVPTKKLVLGIPFYGYAWR 240
Query: 267 LANANNHGFWAPTS-----GVVNGGTMSYKEIRQFIMSTNATKVFNATVVSDYCYSGTTW 321
L NAN HG AP + G V+ G+M+Y IR +I+ + AT V+NAT+V DYCYSG+ W
Sbjct: 241 LVNANIHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVESRATTVYNATIVGDYCYSGSNW 300
Query: 322 IGYDDTQSVNTKVKYAKDNGLLGYFAWQISQDDNWILSR 360
I YDDTQ+V KV Y K GLLGYFAW ++ D NW LSR
Sbjct: 301 ISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGDQNWGLSR 339
>pdb|1HKK|A Chain A, High Resoultion Crystal Structure Of Human Chitinase In
Complex With Allosamidin
Length = 364
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 112/344 (32%), Positives = 171/344 (49%), Gaps = 30/344 (8%)
Query: 30 AAYWFSGSNFPVADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPA 89
A Y + F D+D L THL AFA + N Q++ + N +++ NP
Sbjct: 11 AQYRQGEARFLPKDLDPSLCTHLIYAFAGMT--NHQLSTTEWNDETLYQEFNGLKKMNPK 68
Query: 90 VKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN----- 144
+K LL+IGG N + F M + A +R++F++S+I R +F GLD+DWEYP +
Sbjct: 69 LKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPA 128
Query: 145 AQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNV 204
F TL+ + +A EA++SGK LLL+AAV Y A I+ +LD+ N+
Sbjct: 129 VDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNL 188
Query: 205 MAYDFFYNDDRTGSRITGPPAALFSPDRSQVSG-------DSGIRAWIQSGLSPKKIVLG 257
MAYDF + ++TG + L+ R + SG D+ ++ W+Q G K++LG
Sbjct: 189 MAYDF----HGSWEKVTGHNSPLYK--RQEQSGAAASLNVDAAVQQWLQKGTPASKLILG 242
Query: 258 FPFFGHSLQLANANNHGFWAPTSG-------VVNGGTMSYKEIRQFIMSTNATKVFNATV 310
P +G S LA++++ AP +G GG ++Y E+ + ATK
Sbjct: 243 MPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW---KGATKQRIQDQ 299
Query: 311 VSDYCYSGTTWIGYDDTQSVNTKVKYAKDNGLLGYFAWQISQDD 354
Y + W+G+DD +S TKV Y K GL G W + DD
Sbjct: 300 KVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|1LG1|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Chitobiose
pdb|1LG2|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Ethylene Glycol
pdb|1LQ0|A Chain A, Crystal Structure Of Human Chitotriosidase At 2.2 Angstrom
Resolution
Length = 365
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 112/344 (32%), Positives = 171/344 (49%), Gaps = 30/344 (8%)
Query: 30 AAYWFSGSNFPVADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPA 89
A Y + F D+D L THL AFA + N Q++ + N +++ NP
Sbjct: 11 AQYRQGEARFLPKDLDPSLCTHLIYAFAGMT--NHQLSTTEWNDETLYQEFNGLKKMNPK 68
Query: 90 VKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN----- 144
+K LL+IGG N + F M + A +R++F++S+I R +F GLD+DWEYP +
Sbjct: 69 LKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPA 128
Query: 145 AQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNV 204
F TL+ + +A EA++SGK LLL+AAV Y A I+ +LD+ N+
Sbjct: 129 VDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNL 188
Query: 205 MAYDFFYNDDRTGSRITGPPAALFSPDRSQVSG-------DSGIRAWIQSGLSPKKIVLG 257
MAYDF + ++TG + L+ R + SG D+ ++ W+Q G K++LG
Sbjct: 189 MAYDF----HGSWEKVTGHNSPLYK--RQEESGAAASLNVDAAVQQWLQKGTPASKLILG 242
Query: 258 FPFFGHSLQLANANNHGFWAPTSG-------VVNGGTMSYKEIRQFIMSTNATKVFNATV 310
P +G S LA++++ AP +G GG ++Y E+ + ATK
Sbjct: 243 MPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW---KGATKQRIQDQ 299
Query: 311 VSDYCYSGTTWIGYDDTQSVNTKVKYAKDNGLLGYFAWQISQDD 354
Y + W+G+DD +S TKV Y K GL G W + DD
Sbjct: 300 KVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|1HKI|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Glucoallosamidin B
pdb|1HKJ|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Methylallosamidin
pdb|1HKM|A Chain A, High Resolution Crystal Structure Of Human Chitinase In
Complex With Demethylallosamidin
Length = 365
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 112/344 (32%), Positives = 171/344 (49%), Gaps = 30/344 (8%)
Query: 30 AAYWFSGSNFPVADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPA 89
A Y + F D+D L THL AFA + N Q++ + N +++ NP
Sbjct: 11 AQYRQGEARFLPKDLDPSLCTHLIYAFAGMT--NHQLSTTEWNDETLYQEFNGLKKMNPK 68
Query: 90 VKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN----- 144
+K LL+IGG N + F M + A +R++F++S+I R +F GLD+DWEYP +
Sbjct: 69 LKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPA 128
Query: 145 AQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNV 204
F TL+ + +A EA++SGK LLL+AAV Y A I+ +LD+ N+
Sbjct: 129 VDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNL 188
Query: 205 MAYDFFYNDDRTGSRITGPPAALFSPDRSQVSG-------DSGIRAWIQSGLSPKKIVLG 257
MAYDF + ++TG + L+ R + SG D+ ++ W+Q G K++LG
Sbjct: 189 MAYDF----HGSWEKVTGHNSPLYK--RQEQSGAAASLNVDAAVQQWLQKGTPASKLILG 242
Query: 258 FPFFGHSLQLANANNHGFWAPTSG-------VVNGGTMSYKEIRQFIMSTNATKVFNATV 310
P +G S LA++++ AP +G GG ++Y E+ + ATK
Sbjct: 243 MPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW---KGATKQRIQDQ 299
Query: 311 VSDYCYSGTTWIGYDDTQSVNTKVKYAKDNGLLGYFAWQISQDD 354
Y + W+G+DD +S TKV Y K GL G W + DD
Sbjct: 300 KVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 112/344 (32%), Positives = 171/344 (49%), Gaps = 30/344 (8%)
Query: 30 AAYWFSGSNFPVADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPA 89
A Y + F D+D L THL AFA + N Q++ + N +++ NP
Sbjct: 11 AQYRQGEARFLPKDLDPSLCTHLIYAFAGMT--NHQLSTTEWNDETLYQEFNGLKKMNPK 68
Query: 90 VKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN----- 144
+K LL+IGG N + F M + A +R++F++S+I R +F GLD+DWEYP +
Sbjct: 69 LKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPA 128
Query: 145 AQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNV 204
F TL+ + +A EA++SGK LLL+AAV Y A I+ +LD+ N+
Sbjct: 129 VDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNL 188
Query: 205 MAYDFFYNDDRTGSRITGPPAALFSPDRSQVSG-------DSGIRAWIQSGLSPKKIVLG 257
MAYDF + ++TG + L+ R + SG D+ ++ W+Q G K++LG
Sbjct: 189 MAYDF----HGSWEKVTGHNSPLYK--RQEESGAAASLNVDAAVQQWLQKGTPASKLILG 242
Query: 258 FPFFGHSLQLANANNHGFWAPTSG-------VVNGGTMSYKEIRQFIMSTNATKVFNATV 310
P +G S LA++++ AP +G GG ++Y E+ + ATK
Sbjct: 243 MPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW---KGATKQRIQDQ 299
Query: 311 VSDYCYSGTTWIGYDDTQSVNTKVKYAKDNGLLGYFAWQISQDD 354
Y + W+G+DD +S TKV Y K GL G W + DD
Sbjct: 300 KVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|1GUV|A Chain A, Structure Of Human Chitotriosidase
Length = 366
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 111/344 (32%), Positives = 171/344 (49%), Gaps = 30/344 (8%)
Query: 30 AAYWFSGSNFPVADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPA 89
A Y + F D+D L THL AFA + N Q++ + N +++ NP
Sbjct: 11 AQYRQGEARFLPKDLDPSLCTHLIYAFAGMT--NHQLSTTEWNDETLYQEFNGLKKMNPK 68
Query: 90 VKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN----- 144
+K LL+IGG N + F M + A +R++F++S+I R +F GLD+DWEYP +
Sbjct: 69 LKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPA 128
Query: 145 AQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNV 204
F TL+ + +A EA++SGK LLL+AAV Y A I+ +LD+ N+
Sbjct: 129 VDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNL 188
Query: 205 MAYDFFYNDDRTGSRITGPPAALFSPDRSQVSG-------DSGIRAWIQSGLSPKKIVLG 257
MAYDF + ++TG + L+ R + SG D+ ++ W++ G K++LG
Sbjct: 189 MAYDF----HGSWEKVTGHNSPLYK--RQEESGAAASLNVDAAVQQWLEKGTPASKLILG 242
Query: 258 FPFFGHSLQLANANNHGFWAPTSG-------VVNGGTMSYKEIRQFIMSTNATKVFNATV 310
P +G S LA++++ AP +G GG ++Y E+ + ATK
Sbjct: 243 MPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW---KGATKQRIQDQ 299
Query: 311 VSDYCYSGTTWIGYDDTQSVNTKVKYAKDNGLLGYFAWQISQDD 354
Y + W+G+DD +S TKV Y K GL G W + DD
Sbjct: 300 KVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|4AY1|A Chain A, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|B Chain B, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|C Chain C, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|D Chain D, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|E Chain E, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|F Chain F, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|G Chain G, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|H Chain H, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|I Chain I, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|J Chain J, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|K Chain K, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|L Chain L, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
Length = 365
Score = 161 bits (407), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 163/329 (49%), Gaps = 19/329 (5%)
Query: 38 NFPVADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLSIG 97
F +ID L +HL +FA + +N +V + +++ + +++ KNP +K LLSIG
Sbjct: 20 KFTPENIDPFLCSHLIYSFASI--ENNKVIIKDKSEVMLYQTINSLKTKNPKLKILLSIG 77
Query: 98 GGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEW 157
G + F M + SR FI+S I R+ NF GLD+ W YPD + + F L+ E
Sbjct: 78 GYLFGSKGFHPMVDSSTSRLEFINSIILFLRNHNFDGLDVSWIYPDQKENTHFTVLIHEL 137
Query: 158 RSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFFYNDDRTG 217
A + S K LLLTA VS ++ LD+ N++++DF + ++
Sbjct: 138 AEAFQKDFTKSTKERLLLTAGVSAGRQMIDNSYQVEKLAKDLDFINLLSFDFHGSWEK-- 195
Query: 218 SRITGPPAALFS--PDR---SQVSGDSGIRAWIQSGLSPKKIVLGFPFFGHSLQLANANN 272
ITG + L DR S + + + WI G+ +K+V+G P +GHS LA+A
Sbjct: 196 PLITGHNSPLSKGWQDRGPSSYYNVEYAVGYWIHKGMPSEKVVMGIPTYGHSFTLASAET 255
Query: 273 HGFWAPTSG-------VVNGGTMSYKEIRQFIMSTNATKVFNATVVSDYCYSGTTWIGYD 325
AP SG + G ++Y EI QF+ T++ + V Y G W+GYD
Sbjct: 256 -TVGAPASGPGAAGPITESSGFLAYYEICQFLKGAKITRLQDQQV--PYAVKGNQWVGYD 312
Query: 326 DTQSVNTKVKYAKDNGLLGYFAWQISQDD 354
D +S+ TKV++ K+ L G W I DD
Sbjct: 313 DVKSMETKVQFLKNLNLGGAMIWSIDMDD 341
>pdb|3FXY|A Chain A, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|B Chain B, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|C Chain C, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|D Chain D, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FY1|A Chain A, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3FY1|B Chain B, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3RM4|A Chain A, Amcase In Complex With Compound 1
pdb|3RM4|B Chain B, Amcase In Complex With Compound 1
pdb|3RM8|A Chain A, Amcase In Complex With Compound 2
pdb|3RM8|B Chain B, Amcase In Complex With Compound 2
pdb|3RM9|A Chain A, Amcase In Complex With Compound 3
pdb|3RM9|B Chain B, Amcase In Complex With Compound 3
pdb|3RME|A Chain A, Amcase In Complex With Compound 5
pdb|3RME|B Chain B, Amcase In Complex With Compound 5
Length = 395
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 107/327 (32%), Positives = 155/327 (47%), Gaps = 20/327 (6%)
Query: 43 DIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLSIGGGNAS 102
DI+ L THL AFA + QN ++T N ++ KN +K LL+IGG N
Sbjct: 24 DINPCLCTHLIYAFAGM--QNNEITTIEWNDVTLYQAFNGLKNKNSQLKTLLAIGGWNFG 81
Query: 103 KESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN-----AQMSDFGTLLTEW 157
F AM S +R++FI S I R F GLD DWEYP + F L+ E
Sbjct: 82 TAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTVLVQEM 141
Query: 158 RSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFFYNDDRTG 217
R A EA+ KP L++TAAV+ + + +S LD+ +VM YD + G
Sbjct: 142 REAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDL--HGSWEG 199
Query: 218 SRITGPPAALFSPD---RSQVSGDSGIRAWIQSGLSPKKIVLGFPFFGHSLQLANANNHG 274
P + D + ++ D + W +G +K+++GFP +GH+ L+N +N G
Sbjct: 200 YTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTG 259
Query: 275 FWAPTSG-------VVNGGTMSYKEIRQFIMSTNATKVFNATVVSDYCYSGTTWIGYDDT 327
APTSG G +Y EI F + AT+ ++A Y Y G W+GYD+
Sbjct: 260 IGAPTSGAGPAGPYAKESGIWAYYEICTF-LKNGATQGWDAPQEVPYAYQGNVWVGYDNV 318
Query: 328 QSVNTKVKYAKDNGLLGYFAWQISQDD 354
+S + K ++ K N G W I DD
Sbjct: 319 KSFDIKAQWLKHNKFGGAMVWAIDLDD 345
>pdb|2YBT|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBU|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
Length = 381
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 107/327 (32%), Positives = 155/327 (47%), Gaps = 20/327 (6%)
Query: 43 DIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLSIGGGNAS 102
DI+ L THL AFA + QN ++T N ++ KN +K LL+IGG N
Sbjct: 28 DINPCLCTHLIYAFAGM--QNNEITTIEWNDVTLYQAFNGLKNKNSQLKTLLAIGGWNFG 85
Query: 103 KESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN-----AQMSDFGTLLTEW 157
F AM S +R++FI S I R F GLD DWEYP + F L+ E
Sbjct: 86 TAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTVLVQEM 145
Query: 158 RSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFFYNDDRTG 217
R A EA+ KP L++TAAV+ + + +S LD+ +VM YD + G
Sbjct: 146 REAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDL--HGSWEG 203
Query: 218 SRITGPPAALFSPD---RSQVSGDSGIRAWIQSGLSPKKIVLGFPFFGHSLQLANANNHG 274
P + D + ++ D + W +G +K+++GFP +GH+ L+N +N G
Sbjct: 204 YTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTG 263
Query: 275 FWAPTSG-------VVNGGTMSYKEIRQFIMSTNATKVFNATVVSDYCYSGTTWIGYDDT 327
APTSG G +Y EI F + AT+ ++A Y Y G W+GYD+
Sbjct: 264 IGAPTSGAGPAGPYAKESGIWAYYEICTF-LKNGATQGWDAPQEVPYAYQGNVWVGYDNI 322
Query: 328 QSVNTKVKYAKDNGLLGYFAWQISQDD 354
+S + K ++ K N G W I DD
Sbjct: 323 KSFDIKAQWLKHNKFGGAMVWAIDLDD 349
>pdb|1HJV|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|C Chain C, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|D Chain D, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJW|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJW|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJX|A Chain A, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|B Chain B, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|C Chain C, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|D Chain D, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1NWR|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWS|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWT|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWU|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
Length = 362
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 160/332 (48%), Gaps = 25/332 (7%)
Query: 36 GSNFPVADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLS 95
GS FP A +D L TH+ +FA++ N + N T++ +NP +K LLS
Sbjct: 18 GSCFPDA-LDRFLCTHIIYSFANI--SNDHIDTWEWNDVTLYGMLNTLKNRNPNLKTLLS 74
Query: 96 IGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLT 155
+GG N + F+ +AS SR++FI S R+ F GLD+ W YP F TL+
Sbjct: 75 VGGWNFGSQRFSKIASNTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGRRDKQHFTTLIK 134
Query: 156 EWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFFYNDDR 215
E ++ EA+ GK LLL+AA+S + + IS LD+ ++M YDF
Sbjct: 135 EMKAEFIKEAQ-PGKKQLLLSAALSAGKVTIDSSYDIAKISQHLDFISIMTYDFHGAWRG 193
Query: 216 TGSRITGPPAALF------SPDRSQVSGDSGIRAWIQSGLSPKKIVLGFPFFGHSLQLAN 269
T TG + LF SPDR + D + ++ G K+V+G P FG S LA+
Sbjct: 194 T----TGHHSPLFRGQEDASPDRFSNT-DYAVGYMLRLGAPASKLVMGIPTFGRSFTLAS 248
Query: 270 ANNHGFWAPTSG-------VVNGGTMSYKEIRQFIMSTNATKVFNATVVSDYCYSGTTWI 322
+ G AP SG GT++Y EI F+ ++ V Y G W+
Sbjct: 249 SET-GVGAPISGPGIPGRFTKEAGTLAYYEICDFLRGATVHRILGQQV--PYATKGNQWV 305
Query: 323 GYDDTQSVNTKVKYAKDNGLLGYFAWQISQDD 354
GYDD +SV +KV+Y KD L G W + DD
Sbjct: 306 GYDDQESVKSKVQYLKDRQLAGAMVWALDLDD 337
>pdb|1E9L|A Chain A, The Crystal Structure Of Novel Mammalian Lectin Ym1
Suggests A Saccharide Binding Site
pdb|1VF8|A Chain A, The Crystal Structure Of Ym1 At 1.31 A Resolution
Length = 377
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/334 (32%), Positives = 163/334 (48%), Gaps = 24/334 (7%)
Query: 38 NFPVADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLSIG 97
+F +ID L THL AFA + QN ++T + E ++ KN +K LL+IG
Sbjct: 19 SFKPGNIDPCLCTHLIYAFAGM--QNNEITYTHEQDLRDYEALNGLKDKNTELKTLLAIG 76
Query: 98 GGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN-----AQMSDFGT 152
G F+AM S +R+ FI S I R NF GL++DW+YP + F
Sbjct: 77 GWKFGPAPFSAMVSTPQNRQIFIQSVIRFLRQYNFDGLNLDWQYPGSRGSPPKDKHLFSV 136
Query: 153 LLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFFYN 212
L+ E R A E+ P LLLT+ + + + +S SLD+ VM YD +
Sbjct: 137 LVKEMRKAFEEESVEKDIPRLLLTSTGAGIIDVIKSGYKIPELSQSLDYIQVMTYDL--H 194
Query: 213 DDRTGSRITGPPAALF-SP----DRSQVSGDSGIRAWIQSGLSPKKIVLGFPFFGHSLQL 267
D + G TG + L+ SP + ++ DS I W G + +K+++GFP +GH+ L
Sbjct: 195 DPKDG--YTGENSPLYKSPYDIGKSADLNVDSIISYWKDHGAASEKLIVGFPAYGHTFIL 252
Query: 268 ANANNHGFWAPT-------SGVVNGGTMSYKEIRQFIMSTNATKVFNATVVSDYCYSGTT 320
++ + G APT G ++Y E+ F ++ AT+V++A Y Y G
Sbjct: 253 SDPSKTGIGAPTISTGPPGKYTDESGLLAYYEVCTF-LNEGATEVWDAPQEVPYAYQGNE 311
Query: 321 WIGYDDTQSVNTKVKYAKDNGLLGYFAWQISQDD 354
W+GYD+ +S K ++ KDN L G W + DD
Sbjct: 312 WVGYDNVRSFKLKAQWLKDNNLGGAVVWPLDMDD 345
>pdb|1LJY|A Chain A, Crystal Structure Of A Novel Regulatory 40 Kda Mammary
Gland Protein (Mgp-40) Secreted During Involution
Length = 361
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 105/330 (31%), Positives = 154/330 (46%), Gaps = 22/330 (6%)
Query: 36 GSNFPVADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLS 95
GS FP A ID L TH+ +FA++ N ++ N T++ +NP +K LLS
Sbjct: 18 GSCFPDA-IDPFLCTHVIYSFANI--SNNEIDTWEWNDVTLYDTLNTLKNRNPKLKTLLS 74
Query: 96 IGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLT 155
+GG N E F+A+AS+ SR++FI S R+ F GLD+ W YP L+
Sbjct: 75 VGGWNFGPERFSAIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGRRDKRHLTALVK 134
Query: 156 EWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFFYNDDR 215
E ++ A EA+ +G LLL+AAVS + IS LD+ +++ YDF +
Sbjct: 135 EMKAEFAREAQ-AGTERLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQ 193
Query: 216 TGSRITGPPAALFSPDRSQVS----GDSGIRAWIQSGLSPKKIVLGFPFFGHSLQLANAN 271
T G + LF + S D + ++ G K+V+G P FG S LA++
Sbjct: 194 T----VGHHSPLFRGNSDGSSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSFTLASSK 249
Query: 272 NHGFWAPTSG-------VVNGGTMSYKEIRQFIMSTNATKVFNATVVSDYCYSGTTWIGY 324
G AP SG G ++Y EI F+ + + V Y G W+ Y
Sbjct: 250 TDG-GAPISGPGIPGRFTKEKGILAYYEICDFLHGATTHRFRDQQV--PYATKGNQWVAY 306
Query: 325 DDTQSVNTKVKYAKDNGLLGYFAWQISQDD 354
DD +SV K +Y K+ L G W + DD
Sbjct: 307 DDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1SR0|A Chain A, Crystal Structure Of Signalling Protein From Sheep(Sps-40)
At 3.0a Resolution Using Crystal Grown In The Presence
Of Polysaccharides
pdb|1ZBK|A Chain A, Recognition Of Specific Peptide Sequences By Signalling
Protein From Sheep Mammary Gland (Sps-40): Crystal
Structure Of The Complex Of Sps-40 With A Peptide
Trp-Pro-Trp At 2.9a Resolution
pdb|1ZL1|A Chain A, Crystal Structure Of The Complex Of Signalling Protein
From Sheep (Sps-40) With A Designed Peptide Trp-His-Trp
Reveals Significance Of Asn79 And Trp191 In The Complex
Formation
pdb|2FDM|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Glycoprotein Frm Sheep (Sps-40)with Hexasaccharide
(Nag6) And Peptide Trp-Pro-Trp At 3.0a Resolution
pdb|2G41|A Chain A, Crystal Structure Of The Complex Of Sheep Signalling
Glycoprotein With Chitin Trimer At 3.0a Resolution
pdb|2G8Z|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Protein From Sheep (Sps-40) With Trimer And Designed
Peptide At 2.5a Resolution
pdb|2DPE|A Chain A, Crystal Structure Of A Secretory 40kda Glycoprotein From
Sheep At 2.0a Resolution
pdb|2DSU|A Chain A, Binding Of Chitin-Like Polysaccharide To Protective
Signalling Factor: Crystal Structure Of The Complex
Formed Between Signalling Protein From Sheep (Sps-40)
With A Tetrasaccharide At 2.2 A Resolution
pdb|2DSV|A Chain A, Interactions Of Protective Signalling Factor With
Chitin-like Polysaccharide: Crystal Structure Of The
Complex Between Signalling Protein From Sheep (sps-40)
And A Hexasaccharide At 2.5a Resolution
pdb|2DSW|A Chain A, Binding Of Chitin-Like Polysaccharides To Protective
Signalling Factor: Crystal Structure Of The Complex Of
Signalling Protein From Sheep (Sps-40) With A
Pentasaccharide At 2.8 A Resolution
Length = 361
Score = 142 bits (358), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 103/330 (31%), Positives = 153/330 (46%), Gaps = 22/330 (6%)
Query: 36 GSNFPVADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLS 95
GS FP A ID L TH+ +FA++ N ++ N T++ +NP +K LLS
Sbjct: 18 GSCFPDA-IDPFLCTHVIYSFANI--SNNEIDTWEWNDVTLYDTLNTLKNRNPKLKTLLS 74
Query: 96 IGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLT 155
+GG N E F+A+AS+ SR++FI S R+ F GLD+ W YP TL+
Sbjct: 75 VGGWNFGPERFSAIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGRRDKRHLTTLVK 134
Query: 156 EWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFFYNDDR 215
E ++ EA+ +G LLL+AAVS + IS LD+ +++ YDF
Sbjct: 135 EMKAEFIREAQ-AGTEQLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDF----HG 189
Query: 216 TGSRITGPPAALFSPDRSQVS----GDSGIRAWIQSGLSPKKIVLGFPFFGHSLQLANAN 271
+ G + LF+ + S D + ++ G K+V+G P FG S LA++
Sbjct: 190 AWRQTVGHHSPLFAGNEDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSFTLASSK 249
Query: 272 NHGFWAPTSG-------VVNGGTMSYKEIRQFIMSTNATKVFNATVVSDYCYSGTTWIGY 324
AP SG G ++Y EI F+ + + V Y G W+ Y
Sbjct: 250 TD-VGAPVSGPGVPGRFTKEKGILAYYEICDFLHGATTHRFRDQQV--PYATKGNQWVAY 306
Query: 325 DDTQSVNTKVKYAKDNGLLGYFAWQISQDD 354
DD +SV K +Y K+ L G W + DD
Sbjct: 307 DDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1SYT|A Chain A, Crystal Structure Of Signalling Protein From Goat Spg-40
In The Presense Of N,n',n''-triacetyl-chitotriose At
2.6a Resolution
Length = 361
Score = 141 bits (356), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 104/330 (31%), Positives = 153/330 (46%), Gaps = 22/330 (6%)
Query: 36 GSNFPVADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLS 95
GS FP A ID L TH+ +FA++ N ++ N T++ +NP +K LLS
Sbjct: 18 GSCFPDA-IDPFLCTHVIYSFANI--SNNEIDTWEWNDVTLYDTLNTLKNRNPKLKTLLS 74
Query: 96 IGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLT 155
+GG N E F+ +AS+ SR++FI S R+ F GLD+ W YP L+
Sbjct: 75 VGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGRRDKRHLTALVK 134
Query: 156 EWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFFYNDDR 215
E ++ A EA+ +G LLL+AAVS + IS LD+ +++ YDF +
Sbjct: 135 EMKAEFAREAQ-AGTERLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQ 193
Query: 216 TGSRITGPPAALFSPDRSQVS----GDSGIRAWIQSGLSPKKIVLGFPFFGHSLQLANAN 271
T G + LF + S D + ++ G K+V+G P FG S LA++
Sbjct: 194 T----VGHHSPLFRGNSDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSFTLASSK 249
Query: 272 NHGFWAPTSG-------VVNGGTMSYKEIRQFIMSTNATKVFNATVVSDYCYSGTTWIGY 324
G AP SG G ++Y EI F+ + + V Y G W+ Y
Sbjct: 250 TDG-GAPISGPGIPGRFTKEKGILAYYEICDFLHGATTHRFRDQQV--PYATKGNQWVAY 306
Query: 325 DDTQSVNTKVKYAKDNGLLGYFAWQISQDD 354
DD +SV K +Y K+ L G W + DD
Sbjct: 307 DDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|2PI6|A Chain A, Crystal Structure Of The Sheep Signalling Glycoprotein
(Sps-40) Complex With 2-Methyl-2-4-Pentanediol At 1.65a
Resolution Reveals Specific Binding Characteristics Of
Sps-40
Length = 361
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/330 (30%), Positives = 150/330 (45%), Gaps = 22/330 (6%)
Query: 36 GSNFPVADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLS 95
GS FP A ID L TH+ FA++ N ++ N T++ +NP +K LLS
Sbjct: 18 GSCFPDA-IDPFLCTHVIYTFANI--SNNEIDTWEWNDVTLYDTLNTLKNRNPKLKTLLS 74
Query: 96 IGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLT 155
+GG N E F+ +AS+ SR++FI S R+ F GLD+ W YP TL+
Sbjct: 75 VGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGRRDKRHLTTLVK 134
Query: 156 EWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFFYNDDR 215
E ++ EA+ +G LLL+AAVS + IS LD+ +++ YDF
Sbjct: 135 EMKAEFIREAQ-AGTEQLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDF----HG 189
Query: 216 TGSRITGPPAALFSPDRSQVS----GDSGIRAWIQSGLSPKKIVLGFPFFGHSLQLANAN 271
+ G + LF + S D + ++ G K+V+G P FG S LA++
Sbjct: 190 AWRQTVGHHSPLFRGNEDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSFTLASSK 249
Query: 272 NHGFWAPTSG-------VVNGGTMSYKEIRQFIMSTNATKVFNATVVSDYCYSGTTWIGY 324
AP SG G ++Y EI F+ + + V Y G W+ Y
Sbjct: 250 TD-VGAPVSGPGIPGRFTKEKGILAYYEICDFLHGATTHRFRDQQV--PYATKGNQWVAY 306
Query: 325 DDTQSVNTKVKYAKDNGLLGYFAWQISQDD 354
DD +SV K +Y K+ L G W + DD
Sbjct: 307 DDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1ZBV|A Chain A, Crystal Structure Of The Goat Signalling Protein (Spg-40)
Complexed With A Designed Peptide Trp-Pro-Trp At 3.2a
Resolution
pdb|1ZBW|A Chain A, Crystal Structure Of The Complex Formed Between Signalling
Protein From Goat Mammary Gland (Spg-40) And A
Tripeptide Trp-Pro-Trp At 2.8a Resolution
pdb|1ZU8|A Chain A, Crystal Structure Of The Goat Signalling Protein With A
Bound Trisaccharide Reveals That Trp78 Reduces The
Carbohydrate Binding Site To Half
pdb|2AOS|A Chain A, Protein-protein Interactions Of Protective Signalling
Factor: Crystal Structure Of Ternary Complex Involving
Signalling Protein From Goat (spg-40), Tetrasaccharide
And A Tripeptide Trp-pro-trp At 2.9 A Resolution
pdb|2B31|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 3.1 A
Resolution Reveals Large Scale Conformational Changes In
The Residues Of Tim Barrel
pdb|2DSZ|A Chain A, Three Dimensional Structure Of A Goat Signalling Protein
Secreted During Involution
pdb|2DT0|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With The Trimer Of N-acetylglucosamine At 2.45a
Resolution
pdb|2DT1|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With Tetrasaccharide At 2.09 A Resolution
pdb|2DT2|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 2.9a
Resolution
pdb|2DT3|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein And The Hexasaccharide At 2.28 A
Resolution
pdb|2O92|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Tetrasaccharide At 3.0a Resolution
pdb|2OLH|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Cellobiose At 2.78 A Resolution
Length = 361
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 103/330 (31%), Positives = 152/330 (46%), Gaps = 22/330 (6%)
Query: 36 GSNFPVADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLS 95
GS FP A ID L TH+ +FA++ N ++ N T++ +NP +K LLS
Sbjct: 18 GSCFPDA-IDPFLCTHVIYSFANI--SNNEIDTWEWNDVTLYDTLNTLKNRNPKLKTLLS 74
Query: 96 IGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLT 155
+GG N E F+ +AS+ SR++FI S R+ F GLD+ W YP L+
Sbjct: 75 VGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGRRDKRHLTALVK 134
Query: 156 EWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFFYNDDR 215
E ++ A EA+ +G LLL+AAVS + IS LD+ +++ YDF +
Sbjct: 135 EMKAEFAREAQ-AGTERLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQ 193
Query: 216 TGSRITGPPAALFSPDRSQVS----GDSGIRAWIQSGLSPKKIVLGFPFFGHSLQLANAN 271
T G + LF + S D + ++ G K+V+G P FG S LA++
Sbjct: 194 T----VGHHSPLFRGNSDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSFTLASSK 249
Query: 272 NHGFWAPTSG-------VVNGGTMSYKEIRQFIMSTNATKVFNATVVSDYCYSGTTWIGY 324
AP SG G ++Y EI F+ + + V Y G W+ Y
Sbjct: 250 T-DVGAPISGPGIPGRFTKEKGILAYYEICDFLHGATTHRFRDQQV--PYATKGNQWVAY 306
Query: 325 DDTQSVNTKVKYAKDNGLLGYFAWQISQDD 354
DD +SV K +Y K+ L G W + DD
Sbjct: 307 DDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1OWQ|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein (Spc-40)
Secreted During Involution
Length = 361
Score = 137 bits (346), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 105/331 (31%), Positives = 153/331 (46%), Gaps = 24/331 (7%)
Query: 36 GSNFPVADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLS 95
GS FP A ID L TH+ +FA++ N ++ N T++ +NP +K LLS
Sbjct: 18 GSCFPDA-IDPFLCTHVIYSFANI--SNNEIDTWEWNDVTLYDTLNTLKNRNPNLKTLLS 74
Query: 96 IGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLT 155
+GG N E F+ +AS+ SR++FI S R+ F GLD+ W YP TL+
Sbjct: 75 VGGWNFGSERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGWRDKRHLTTLVK 134
Query: 156 EWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFFYNDDR 215
E ++ EA+ +G LLL+AAV + IS LD+ +++ YDF
Sbjct: 135 EMKAEFVREAQ-AGTEQLLLSAAVPAGKIAIDRGYDIAQISRHLDFISLLTYDF-----H 188
Query: 216 TGSRIT-GPPAALFSPDRSQVS----GDSGIRAWIQSGLSPKKIVLGFPFFGHSLQLANA 270
G R T G + LF + S D + ++ G K+V+G P FG S LA++
Sbjct: 189 GGWRGTVGHHSPLFRGNSDGSSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSYTLASS 248
Query: 271 NNHGFWAPTSG-------VVNGGTMSYKEIRQFIMSTNATKVFNATVVSDYCYSGTTWIG 323
AP SG GT++Y EI F+ + + V Y G W+
Sbjct: 249 KTD-VGAPISGPGIPGQFTKEKGTLAYYEICDFLHGATTHRFRDQQV--PYATKGNQWVA 305
Query: 324 YDDTQSVNTKVKYAKDNGLLGYFAWQISQDD 354
YDD +SV K +Y K+ L G W + DD
Sbjct: 306 YDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1XHG|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein From
Porcine (spp-40) At 2.89a Resolution
pdb|1XRV|A Chain A, Crystal Structure Of The Novel Secretory Signalling
Protein From Porcine (Spp-40) At 2.1a Resolution.
pdb|1ZBC|A Chain A, Crystal Structure Of The Porcine Signalling Protein
Liganded With The Peptide Trp-Pro-Trp (Wpw) At 2.3 A
Resolution
pdb|1ZB5|A Chain A, Recognition Of Peptide Ligands By Signalling Protein From
Porcine Mammary Gland (Spp-40): Crystal Structure Of The
Complex Of Spp-40 With A Peptide Trp-Pro-Trp At 2.45a
Resolution
Length = 361
Score = 137 bits (346), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 101/330 (30%), Positives = 150/330 (45%), Gaps = 22/330 (6%)
Query: 36 GSNFPVADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLS 95
GS FP A ID L TH+ +FA++ N ++ N T++ +NP +K LLS
Sbjct: 18 GSCFPDA-IDPFLCTHVIYSFANI--SNNEIDTWEWNDVTLYDTLNTLKNRNPNLKTLLS 74
Query: 96 IGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLT 155
+GG N + F+ +AS+ SR++FI S R+ F GLD+ W YP TL+
Sbjct: 75 VGGWNFGPQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGRRDKRHLTTLVK 134
Query: 156 EWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFFYNDDR 215
E ++ EA+ +G LLL+AAVS + IS LD+ +++ YDF
Sbjct: 135 EMKAEFIREAQ-AGTEQLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDF----HG 189
Query: 216 TGSRITGPPAALFSPDRSQVS----GDSGIRAWIQSGLSPKKIVLGFPFFGHSLQLANAN 271
+ G + LF S D + ++ G K+V+G P FG S LA++
Sbjct: 190 AWRQTVGHHSPLFRGQEDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGKSFTLASSK 249
Query: 272 NHGFWAPTSG-------VVNGGTMSYKEIRQFIMSTNATKVFNATVVSDYCYSGTTWIGY 324
AP SG G ++Y EI F+ + + V Y G W+ Y
Sbjct: 250 TD-VGAPVSGPGIPGQFTKEKGILAYYEICDFLQGATTHRFRDQQV--PYATKGNQWVAY 306
Query: 325 DDTQSVNTKVKYAKDNGLLGYFAWQISQDD 354
DD +SV K +Y K+ L G W + DD
Sbjct: 307 DDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|2ESC|A Chain A, Crystal Structure Of A 40 Kda Protective Signalling
Protein From Bovine (Spc-40) At 2.1 A Resolution
Length = 361
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 104/331 (31%), Positives = 154/331 (46%), Gaps = 24/331 (7%)
Query: 36 GSNFPVADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLS 95
GS FP A ID L TH+ +FA++ N ++ N T++ +NP +K LLS
Sbjct: 18 GSCFPDA-IDPFLCTHVIYSFANI--SNNEIDTWEWNDVTLYDTLNTLKNRNPNLKTLLS 74
Query: 96 IGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLT 155
+GG N E F+ +AS+ SR++FI S R+ F GLD+ W YP TL+
Sbjct: 75 VGGWNFGSERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGWRDKRHLTTLVK 134
Query: 156 EWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFFYNDDR 215
E ++ EA+ +G LLL+AAV+ + IS LD+ +++ YDF
Sbjct: 135 EMKAEFVREAQ-AGTEQLLLSAAVTAGKIAIDRGYDIAQISRHLDFISLLTYDF-----H 188
Query: 216 TGSRIT-GPPAALFSPDRSQVS----GDSGIRAWIQSGLSPKKIVLGFPFFGHSLQLANA 270
G R T G + LF + S D + ++ G K+V+G P FG S LA++
Sbjct: 189 GGWRGTVGHHSPLFRGNSDGSSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSYTLASS 248
Query: 271 NNHGFWAPTSG-------VVNGGTMSYKEIRQFIMSTNATKVFNATVVSDYCYSGTTWIG 323
+ AP SG G ++Y EI F+ + + V Y G W+
Sbjct: 249 STR-VGAPISGPGIPGQFTKEKGILAYYEICDFLHGATTHRFRDQQV--PYATKGNQWVA 305
Query: 324 YDDTQSVNTKVKYAKDNGLLGYFAWQISQDD 354
YDD +SV K +Y K+ L G W + DD
Sbjct: 306 YDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1TFV|A Chain A, Crystal Structure Of A Buffalo Signaling Glycoprotein
(Spb-40) Secreted During Involution
pdb|2O9O|A Chain A, Crystal Structure Of The Buffalo Secretory Signalling
Glycoprotein At 2.8 A Resolution
pdb|2QF8|A Chain A, Crystal Structure Of The Complex Of Buffalo Secretory
Glycoprotein With Tetrasaccharide At 2.8a Resolution
Length = 361
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 100/330 (30%), Positives = 153/330 (46%), Gaps = 22/330 (6%)
Query: 36 GSNFPVADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLS 95
GS FP A ID L TH+ +FA++ N ++ N T++ +NP +K LLS
Sbjct: 18 GSCFPDA-IDPFLCTHVIYSFANI--SNNEIDTWEWNDVTLYDTLNTLKNRNPNLKTLLS 74
Query: 96 IGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLT 155
+GG N + F+ +AS+ SR++FI S R+ F GLD+ W +P TL+
Sbjct: 75 VGGWNYGSQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLWPGWRDKRHLTTLVK 134
Query: 156 EWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFFYNDDR 215
E ++ EA+ +G LLL+AAV+ + IS LD+ +++ YDF
Sbjct: 135 EMKAEFVREAQ-AGTEQLLLSAAVTAGKIAIDRGYDIAQISRHLDFISLLTYDF----HG 189
Query: 216 TGSRITGPPAALFSPDRSQVS----GDSGIRAWIQSGLSPKKIVLGFPFFGHSLQLANAN 271
+ G + LF + S D + ++ G K+V+G P FG S LA++
Sbjct: 190 AWRQTVGHHSPLFRGNEDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSYTLASSK 249
Query: 272 NHGFWAPTSGV-VNG------GTMSYKEIRQFIMSTNATKVFNATVVSDYCYSGTTWIGY 324
AP SG + G G ++Y EI F+ + + V Y G W+ Y
Sbjct: 250 T-DVGAPISGPGIPGRFTKWKGILAYYEICDFLHGATTHRFRDQQV--PYATKGNQWVAY 306
Query: 325 DDTQSVNTKVKYAKDNGLLGYFAWQISQDD 354
DD +SV K +Y K+ L G W + DD
Sbjct: 307 DDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1ITX|A Chain A, Catalytic Domain Of Chitinase A1 From Bacillus Circulans
Wl-12
Length = 419
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 110/393 (27%), Positives = 171/393 (43%), Gaps = 70/393 (17%)
Query: 36 GSNFPVADIDSILFTHLFCAFADLDSQNFQ----------VTVSSENQA----------- 74
G N+ VADID TH+ AFAD+ VT + +N+
Sbjct: 25 GRNYNVADIDPTKVTHINYAFADICWNGIHGNPDPSGPNPVTWTCQNEKSQTINVPNGTI 84
Query: 75 -----------IFSSFT------------RTVQQKNPAVKALLSIGGGNASKESFAAMAS 111
F+ T ++Q NP +K ++S+GG S F+ +A+
Sbjct: 85 VLGDPWIDTGKTFAGDTWDQPIAGNINQLNKLKQTNPNLKTIISVGGWTWSNR-FSDVAA 143
Query: 112 QAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQM----------SDFGTLLTEWRSAV 161
AA+R+ F +S+++ R NF G+D+DWEYP + + ++ LL++ R +
Sbjct: 144 TAATREVFANSAVDFLRKYNFDGVDLDWEYPVSGGLDGNSKRPEDKQNYTLLLSKIREKL 203
Query: 162 AAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDF---FYNDDRTGS 218
A GK LLT A SA Y A + I+ +DW N+M YDF + +
Sbjct: 204 DAAGAVDGK-KYLLTIASGASATY-AANTELAKIAAIVDWINIMTYDFNGAWQKISAHNA 261
Query: 219 RITGPPAALFS--PDRSQVSGDSGIRAWIQSGLSPKKIVLGFPFFGHSLQ-LANANNHGF 275
+ PAA + PD + + +G + + +G+ K+VLG PF+G A A N +
Sbjct: 262 PLNYDPAASAAGVPDANTFNVAAGAQGHLDAGVPAAKLVLGVPFYGRGWDGCAQAGNGQY 321
Query: 276 WAPTSGVVNG----GTMSYKEIR-QFIMSTNATKVFNATVVSDYCY--SGTTWIGYDDTQ 328
T G G G+ + ++ +I T+ +N T Y Y S +I YDD +
Sbjct: 322 QTCTGGSSVGTWEAGSFDFYDLEANYINKNGYTRYWNDTAKVPYLYNASNKRFISYDDAE 381
Query: 329 SVNTKVKYAKDNGLLGYFAWQISQDDNWILSRE 361
SV K Y K GL G W++S D N L +
Sbjct: 382 SVGYKTAYIKSKGLGGAMFWELSGDRNKTLQNK 414
>pdb|1D2K|A Chain A, C. Immitis Chitinase 1 At 2.2 Angstroms Resolution
pdb|1LL4|A Chain A, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|B Chain B, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|C Chain C, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|D Chain D, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
Length = 392
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/331 (28%), Positives = 144/331 (43%), Gaps = 25/331 (7%)
Query: 43 DIDSILFTHLFCAFA---------------DLDSQNFQVTVSSENQAIFSSFTRT--VQQ 85
D+ + FTH+ AFA D D ++ + +++
Sbjct: 23 DLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHYPGDKWDEPGNNVYGCIKQMYLLKK 82
Query: 86 KNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYP-DN 144
N +K LLSIGG S +F AS RK F D+S+ L + L F G+DIDWEYP D
Sbjct: 83 NNRNLKTLLSIGGWTYS-PNFKTPASTEEGRKKFADTSLKLMKDLGFDGIDIDWEYPEDE 141
Query: 145 AQMSDFGTLLTEWRSAVAAEA--RSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWT 202
Q +DF LL R A+ A + +GK LL A+ + NY + + LD+
Sbjct: 142 KQANDFVLLLKACREALDAYSAKHPNGKKFLLTIASPAGPQNYNKL--KLAEMDKYLDFW 199
Query: 203 NVMAYDFFYNDDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQSGLSPKKIVLGFPFFG 262
N+MAYDF + D+ ++ + P+ + S D ++ +I++G+ KIVLG P +G
Sbjct: 200 NLMAYDFSGSWDKVSGHMSNVFPSTTKPESTPFSSDKAVKDYIKAGVPANKIVLGMPLYG 259
Query: 263 HSLQLANANNHGFWAPTSGVVNGGTMSYKEIRQFIMSTNATKVFNATVVSDYCYSGTTWI 322
+ + F G G YK++ Q T++ + Y + I
Sbjct: 260 RAFASTDGIGTSFNGVGGGSWENGVWDYKDMPQ--QGAQVTELEDIAASYSYDKNKRYLI 317
Query: 323 GYDDTQSVNTKVKYAKDNGLLGYFAWQISQD 353
YD + K +Y NG+ G W+ S D
Sbjct: 318 SYDTVKIAGKKAEYITKNGMGGGMWWESSSD 348
>pdb|1LL7|A Chain A, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
pdb|1LL7|B Chain B, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 114 bits (286), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 144/331 (43%), Gaps = 25/331 (7%)
Query: 43 DIDSILFTHLFCAFA---------------DLDSQNFQVTVSSENQAIFSSFTRT--VQQ 85
D+ + FTH+ AFA D D ++ + +++
Sbjct: 23 DLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHYPGDKWDEPGNNVYGCIKQMYLLKK 82
Query: 86 KNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYP-DN 144
N +K LLSIGG S +F AS RK F D+S+ L + L F G+DIDW+YP D
Sbjct: 83 NNRNLKTLLSIGGWTYS-PNFKTPASTEEGRKKFADTSLKLMKDLGFDGIDIDWQYPEDE 141
Query: 145 AQMSDFGTLLTEWRSAVAAEA--RSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWT 202
Q +DF LL R A+ A + +GK LL A+ + NY + + LD+
Sbjct: 142 KQANDFVLLLKACREALDAYSAKHPNGKKFLLTIASPAGPQNYNKL--KLAEMDKYLDFW 199
Query: 203 NVMAYDFFYNDDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQSGLSPKKIVLGFPFFG 262
N+MAYDF + D+ ++ + P+ + S D ++ +I++G+ KIVLG P +G
Sbjct: 200 NLMAYDFSGSWDKVSGHMSNVFPSTTKPESTPFSSDKAVKDYIKAGVPANKIVLGMPLYG 259
Query: 263 HSLQLANANNHGFWAPTSGVVNGGTMSYKEIRQFIMSTNATKVFNATVVSDYCYSGTTWI 322
+ + F G G YK++ Q T++ + Y + I
Sbjct: 260 RAFASTDGIGTSFNGVGGGSWENGVWDYKDMPQ--QGAQVTELEDIAASYSYDKNKRYLI 317
Query: 323 GYDDTQSVNTKVKYAKDNGLLGYFAWQISQD 353
YD + K +Y NG+ G W+ S D
Sbjct: 318 SYDTVKIAGKKAEYITKNGMGGGMWWESSSD 348
>pdb|1W9P|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9P|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9U|A Chain A, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9U|B Chain B, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9V|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|1W9V|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|2A3A|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3A|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3B|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3B|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3C|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3C|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3E|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2A3E|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2IUZ|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|2IUZ|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|3CH9|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CH9|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CHC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHD|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHD|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
pdb|3CHF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
Length = 433
Score = 114 bits (286), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 106/348 (30%), Positives = 161/348 (46%), Gaps = 44/348 (12%)
Query: 36 GSNFPVADIDSILFTHLFCAFADLDSQNFQVTVSS-----ENQAIFSSFTRT-------- 82
G N D+ TH+ AFA++ + +V ++ E S++ T
Sbjct: 56 GRNHNPQDLPVERLTHVLYAFANVRPETGEVYMTDSWADIEKHYPGDSWSDTGNNVYGCI 115
Query: 83 -----VQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDI 137
++++N +K LLSIGG S +FA AS A RK+F +++ L + L F GLDI
Sbjct: 116 KQLYLLKKQNRNLKVLLSIGGWTYSP-NFAPAASTDAGRKNFAKTAVKLLQDLGFDGLDI 174
Query: 138 DWEYPDNAQMS-DFGTLLTEWRSAVAA-EARSSGKPALLLTAAVSYSANYFGAINPTSAI 195
DWEYP+N Q + DF LL E R+A+ + A ++G LLT A + ++ +
Sbjct: 175 DWEYPENDQQANDFVLLLKEVRTALDSYSAANAGGQHFLLTVASPAGPDKIKVLH-LKDM 233
Query: 196 SNSLDWTNVMAYDFFYNDDRTGSRITGPPAALF----SPDRSQVSGDSGIRAWIQSGLSP 251
LD+ N+MAYD+ + S ++G A ++ +P + + + + + G+
Sbjct: 234 DQQLDFWNLMAYDYA----GSFSSLSGHQANVYNDTSNPLSTPFNTQTALDLYRAGGVPA 289
Query: 252 KKIVLGFPFFGHSLQLANANNHGFWAPTSGVVNG----GTMSYKEIRQFIMSTNATKVFN 307
KIVLG P +G S AN G P +GV G G YK + Q AT+
Sbjct: 290 NKIVLGMPLYGRSF----ANTDGPGKPYNGVGQGSWENGVWDYKALPQ----AGATEHVL 341
Query: 308 ATVVSDYCYSGTT--WIGYDDTQSVNTKVKYAKDNGLLGYFAWQISQD 353
+++ Y Y T I YD+ Q N K Y K GL G W S D
Sbjct: 342 PDIMASYSYDATNKFLISYDNPQVANLKSGYIKSLGLGGAMWWDSSSD 389
>pdb|1WNO|A Chain A, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
pdb|1WNO|B Chain B, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
Length = 395
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 106/348 (30%), Positives = 161/348 (46%), Gaps = 44/348 (12%)
Query: 36 GSNFPVADIDSILFTHLFCAFADLDSQNFQVTVSS-----ENQAIFSSFTRT-------- 82
G N D+ TH+ AFA++ + +V ++ E S++ T
Sbjct: 18 GRNHNPQDLPVERLTHVLYAFANVRPETGEVYMTDSWADIEKHYPGDSWSDTGNNVYGCI 77
Query: 83 -----VQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDI 137
++++N +K LLSIGG S +FA AS A RK+F +++ L + L F GLDI
Sbjct: 78 KQLYLLKKQNRNLKVLLSIGGWTYSP-NFAPAASTDAGRKNFAKTAVKLLQDLGFDGLDI 136
Query: 138 DWEYPDNAQMS-DFGTLLTEWRSAVAA-EARSSGKPALLLTAAVSYSANYFGAINPTSAI 195
DWEYP+N Q + DF LL E R+A+ + A ++G LLT A + ++ +
Sbjct: 137 DWEYPENDQQANDFVLLLREVRTALDSYSAANAGGQHFLLTVASPAGPDKIKVLH-LKDM 195
Query: 196 SNSLDWTNVMAYDFFYNDDRTGSRITGPPAALF----SPDRSQVSGDSGIRAWIQSGLSP 251
LD+ N+MAYD+ + S ++G A ++ +P + + + + + G+
Sbjct: 196 DQQLDFWNLMAYDYA----GSFSSLSGHQANVYNDTSNPLSTPFNTQTALDLYRAGGVPA 251
Query: 252 KKIVLGFPFFGHSLQLANANNHGFWAPTSGVVNG----GTMSYKEIRQFIMSTNATKVFN 307
KIVLG P +G S AN G P +GV G G YK + Q AT+
Sbjct: 252 NKIVLGMPLYGRSF----ANTDGPGKPYNGVGQGSWENGVWDYKALPQ----AGATEHVL 303
Query: 308 ATVVSDYCYSGTT--WIGYDDTQSVNTKVKYAKDNGLLGYFAWQISQD 353
+++ Y Y T I YD+ Q N K Y K GL G W S D
Sbjct: 304 PDIMASYSYDATNKFLISYDNPQVANLKSGYIKSLGLGGAMWWDSSSD 351
>pdb|1LL6|A Chain A, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|B Chain B, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|C Chain C, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|D Chain D, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 114 bits (285), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 144/331 (43%), Gaps = 25/331 (7%)
Query: 43 DIDSILFTHLFCAFA---------------DLDSQNFQVTVSSENQAIFSSFTRT--VQQ 85
D+ + FTH+ AFA D D ++ + +++
Sbjct: 23 DLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHYPGDKWDEPGNNVYGCIKQMYLLKK 82
Query: 86 KNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYP-DN 144
N +K LLSIGG S +F AS RK F D+S+ L + L F G+DI+WEYP D
Sbjct: 83 NNRNLKTLLSIGGWTYS-PNFKTPASTEEGRKKFADTSLKLMKDLGFDGIDINWEYPEDE 141
Query: 145 AQMSDFGTLLTEWRSAVAAEA--RSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWT 202
Q +DF LL R A+ A + +GK LL A+ + NY + + LD+
Sbjct: 142 KQANDFVLLLKACREALDAYSAKHPNGKKFLLTIASPAGPQNYNKL--KLAEMDKYLDFW 199
Query: 203 NVMAYDFFYNDDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQSGLSPKKIVLGFPFFG 262
N+MAYDF + D+ ++ + P+ + S D ++ +I++G+ KIVLG P +G
Sbjct: 200 NLMAYDFSGSWDKVSGHMSNVFPSTTKPESTPFSSDKAVKDYIKAGVPANKIVLGMPLYG 259
Query: 263 HSLQLANANNHGFWAPTSGVVNGGTMSYKEIRQFIMSTNATKVFNATVVSDYCYSGTTWI 322
+ + F G G YK++ Q T++ + Y + I
Sbjct: 260 RAFASTDGIGTSFNGVGGGSWENGVWDYKDMPQ--QGAQVTELEDIAASYSYDKNKRYLI 317
Query: 323 GYDDTQSVNTKVKYAKDNGLLGYFAWQISQD 353
YD + K +Y NG+ G W+ S D
Sbjct: 318 SYDTVKIAGKKAEYITKNGMGGGMWWESSSD 348
>pdb|2WK2|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline Dithioamide
Length = 540
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 136/297 (45%), Gaps = 25/297 (8%)
Query: 83 VQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNF-HGLDIDWEY 141
++Q +P +K L SIGG S F R F+ S ++ F G+DIDWE+
Sbjct: 236 LKQAHPDLKILPSIGGWTLSDPFF--FMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEF 293
Query: 142 PDNAQMS-DFGT---------LLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINP 191
P + + G+ L+ E R+ + + +G+ LT+A+S + +
Sbjct: 294 PGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGR-KYELTSAISAGKDKIDKVAY 352
Query: 192 TSAISNSLDWTNVMAYDFFYN-DDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQSGLS 250
A NS+D +M+YDF+ D + T A + PD + + + G+ A + G+
Sbjct: 353 NVA-QNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVN-GVNALLTQGVK 410
Query: 251 PKKIVLGFPFFGHSLQLANA--NNHGFWAPTSGVVNG----GTMSYKEIRQFIMSTNATK 304
P KIV+G +G N NN F +G V G G + Y++I MS
Sbjct: 411 PGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIASQFMSGEWQY 470
Query: 305 VFNATVVSDYCYSGTT--WIGYDDTQSVNTKVKYAKDNGLLGYFAWQISQDDNWILS 359
++AT + Y + +T I +DD +SV K KY D L G F+W+I D+ IL+
Sbjct: 471 TYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADNGDILN 527
>pdb|1RD6|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6L|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6N|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a In Complex With Allosamidin
Length = 563
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 136/297 (45%), Gaps = 25/297 (8%)
Query: 83 VQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNF-HGLDIDWEY 141
++Q +P +K L SIGG S F R F+ S ++ F G+DIDWE+
Sbjct: 259 LKQAHPDLKILPSIGGWTLSDPFF--FMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEF 316
Query: 142 PDNAQMS-DFGT---------LLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINP 191
P + + G+ L+ E R+ + + +G+ LT+A+S + +
Sbjct: 317 PGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGR-KYELTSAISAGKDKIDKVAY 375
Query: 192 TSAISNSLDWTNVMAYDFFYN-DDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQSGLS 250
A NS+D +M+YDF+ D + T A + PD + + + G+ A + G+
Sbjct: 376 NVA-QNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVN-GVNALLAQGVK 433
Query: 251 PKKIVLGFPFFGHSLQLANA--NNHGFWAPTSGVVNG----GTMSYKEIRQFIMSTNATK 304
P KIV+G +G N NN F +G V G G + Y++I MS
Sbjct: 434 PGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIASQFMSGEWQY 493
Query: 305 VFNATVVSDYCYSGTT--WIGYDDTQSVNTKVKYAKDNGLLGYFAWQISQDDNWILS 359
++AT + Y + +T I +DD +SV K KY D L G F+W+I D+ IL+
Sbjct: 494 TYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADNGDILN 550
>pdb|2WLY|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline.
pdb|2WLZ|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline.
pdb|2WM0|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline Thioamide
Length = 548
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 136/297 (45%), Gaps = 25/297 (8%)
Query: 83 VQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNF-HGLDIDWEY 141
++Q +P +K L SIGG S F R F+ S ++ F G+DIDWE+
Sbjct: 236 LKQAHPDLKILPSIGGWTLSDPFF--FMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEF 293
Query: 142 PDNAQMS-DFGT---------LLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINP 191
P + + G+ L+ E R+ + + +G+ LT+A+S + +
Sbjct: 294 PGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGR-KYELTSAISAGKDKIDKVAY 352
Query: 192 TSAISNSLDWTNVMAYDFFYN-DDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQSGLS 250
A NS+D +M+YDF+ D + T A + PD + + + G+ A + G+
Sbjct: 353 NVA-QNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVN-GVNALLTQGVK 410
Query: 251 PKKIVLGFPFFGHSLQLANA--NNHGFWAPTSGVVNG----GTMSYKEIRQFIMSTNATK 304
P KIV+G +G N NN F +G V G G + Y++I MS
Sbjct: 411 PGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIASQFMSGEWQY 470
Query: 305 VFNATVVSDYCYSGTT--WIGYDDTQSVNTKVKYAKDNGLLGYFAWQISQDDNWILS 359
++AT + Y + +T I +DD +SV K KY D L G F+W+I D+ IL+
Sbjct: 471 TYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADNGDILN 527
>pdb|1CTN|A Chain A, Crystal Structure Of A Bacterial Chitinase At 2.3
Angstroms Resolution
Length = 540
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 136/297 (45%), Gaps = 25/297 (8%)
Query: 83 VQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNF-HGLDIDWEY 141
++Q +P +K L SIGG S F R F+ S ++ F G+DIDWE+
Sbjct: 236 LKQAHPDLKILPSIGGWTLSDPFF--FMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEF 293
Query: 142 PDNAQMS-DFGT---------LLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINP 191
P + + G+ L+ E R+ + + +G+ LT+A+S + +
Sbjct: 294 PGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSTETGR-KYELTSAISAGKDKIDKVAY 352
Query: 192 TSAISNSLDWTNVMAYDFFYN-DDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQSGLS 250
A NS+D +M+YDF+ D + T A + PD + + +G+ A + G+
Sbjct: 353 NVA-QNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTT-VNGVNALLAQGVK 410
Query: 251 PKKIVLGFPFFGHSLQLANA--NNHGFWAPTSGVVNG----GTMSYKEIRQFIMSTNATK 304
P KIV+G +G N NN F +G V G G + Y++I MS
Sbjct: 411 PGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQY 470
Query: 305 VFNATVVSDYCYSGTT--WIGYDDTQSVNTKVKYAKDNGLLGYFAWQISQDDNWILS 359
++AT + Y + +T I +DD +SV K KY D L G F+W+I D+ IL+
Sbjct: 471 TYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADNGDILN 527
>pdb|1EDQ|A Chain A, Crystal Structure Of Chitinase A From S. Marcescens At
1.55 Angstroms
pdb|1FFQ|A Chain A, Crystal Structure Of Chitinase A Complexed With
Allosamidin
Length = 540
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 136/297 (45%), Gaps = 25/297 (8%)
Query: 83 VQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNF-HGLDIDWEY 141
++Q +P +K L SIGG S F R F+ S ++ F G+DIDWE+
Sbjct: 236 LKQAHPDLKILPSIGGWTLSDPFF--FMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEF 293
Query: 142 PDNAQMS-DFGT---------LLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINP 191
P + + G+ L+ E R+ + + +G+ LT+A+S + +
Sbjct: 294 PGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGR-KYELTSAISAGKDKIDKVAY 352
Query: 192 TSAISNSLDWTNVMAYDFFYN-DDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQSGLS 250
A NS+D +M+YDF+ D + T A + PD + + +G+ A + G+
Sbjct: 353 NVA-QNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTT-VNGVNALLAQGVK 410
Query: 251 PKKIVLGFPFFGHSLQLANA--NNHGFWAPTSGVVNG----GTMSYKEIRQFIMSTNATK 304
P KIV+G +G N NN F +G V G G + Y++I MS
Sbjct: 411 PGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQY 470
Query: 305 VFNATVVSDYCYSGTT--WIGYDDTQSVNTKVKYAKDNGLLGYFAWQISQDDNWILS 359
++AT + Y + +T I +DD +SV K KY D L G F+W+I D+ IL+
Sbjct: 471 TYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADNGDILN 527
>pdb|3G6L|A Chain A, The Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea
pdb|3G6M|A Chain A, Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea In Complex With
A Potent Inhibitor Caffeine
Length = 406
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 89/350 (25%), Positives = 151/350 (43%), Gaps = 28/350 (8%)
Query: 26 NAVKAAYW-FSGSNFPVADIDSILFTHLFCAFADL--DSQNFQVTVSSENQAIFSSFT-- 80
NAV W G NF AD+ + H+ +F +L D + ++ + +S +
Sbjct: 23 NAVYFTNWGIYGRNFQPADLQASKILHVLYSFMNLRVDGTVYSGDTYADLEKHYSDDSWN 82
Query: 81 -------------RTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLA 127
+++ N ++K +LSIGG S +F A AS A+R +F +++
Sbjct: 83 DIGTNAYGCVKQLYKLKKANRSLKIMLSIGGWTWST-NFPAAASTEATRATFAKTAVEFM 141
Query: 128 RSLNFHGLDIDWEYP-DNAQMSDFGTLLTEWRSAVAA-EARSSGKPALLLTAAVSYSANY 185
+ F G+D+DWEYP ++ LL R + + A + L+ A ++
Sbjct: 142 KDWGFDGIDVDWEYPASETDANNMVLLLQRVRQELDSYSATYANGYHFQLSIAAPAGPSH 201
Query: 186 FGAINPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALFSPDRSQVSGDSGIRAWI 245
+ + + + + LD N+MAYD+ + D T + +P + S + + A+I
Sbjct: 202 YNVLK-LAQLGSVLDNINLMAYDYAGSWDSVSGHQTNLYPSTSNPSSTPFSTKAAVDAYI 260
Query: 246 QSGLSPKKIVLGFPFFGHSLQLANANNHGFWAPTSGVVNGGTMSYKEIRQFIMSTNATKV 305
+G+ KI+LG P +G + + + G G YK + + AT +
Sbjct: 261 AAGVPASKIILGMPIYGRAFVGTDGPGKPYSTIGEGSWESGIWDYKVLPK----AGATVI 316
Query: 306 FNATVVSDYCY--SGTTWIGYDDTQSVNTKVKYAKDNGLLGYFAWQISQD 353
++ + Y Y S T I YD V TKV YAK GL G W+ S D
Sbjct: 317 TDSAAGATYSYDSSSRTMISYDTPDMVRTKVSYAKGLGLGGSMFWEASAD 366
>pdb|1KFW|A Chain A, Structure Of Catalytic Domain Of Psychrophilic Chitinase B
From Arthrobacter Tad20
Length = 435
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 139/320 (43%), Gaps = 43/320 (13%)
Query: 72 NQAIFSSFT--RTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARS 129
+Q + SF + ++ KNP +K ++S+GG SK +F+ A+ ASR+ + S I+L
Sbjct: 98 DQPLAGSFNQLKQLKAKNPKLKVMISLGGWTWSK-NFSKAAATEASRQKLVSSCIDLYIK 156
Query: 130 LN----------------FHGLDIDWEYPDNA------------QMSDFGTLLTEWRSAV 161
N F G+DIDWE+P ++F LL E+R +
Sbjct: 157 GNLPNFEGRGGAGAAAGIFDGIDIDWEWPGTNSGLAGNGVDTVNDRANFKALLAEFRKQL 216
Query: 162 AAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFF--YNDDRTGSR 219
A ++ K +L + A+ A SLD+ ++ YD +N TG +
Sbjct: 217 DAYGSTNNKKYVLSAFLPANPADIDAGGWDDPANFKSLDFGSIQGYDLHGAWNPTLTGHQ 276
Query: 220 --ITGPPAALFSPDRSQVSGDSGIRAWIQSGLSPKKIVLGFPFFGHSLQLANANNHGFWA 277
+ PA +P + + S D ++ ++ +G+ PK++ LG +G A N W
Sbjct: 277 ANLYDDPADPRAPSK-KFSADKAVKKYLAAGIDPKQLGLGLAAYGRGW--TGAKNVSPWG 333
Query: 278 PTSGVVNGGTMSYKEIRQFI--MSTNATKVFNATVVSDYCYSGTTWIGYDDTQSVNTKVK 335
P +G +Y+ + + T T ++A S + Y GT W YD+ + K
Sbjct: 334 P---ATDGAPGTYETANEDYDKLKTLGTDHYDAATGSAWRYDGTQWWSYDNIATTKQKTD 390
Query: 336 YAKDNGLLGYFAWQISQDDN 355
Y GL G W++S D N
Sbjct: 391 YIVSKGLGGGMWWELSGDRN 410
>pdb|1EHN|A Chain A, Crystal Structure Of Chitinase A Mutant E315q Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 136/297 (45%), Gaps = 25/297 (8%)
Query: 83 VQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNF-HGLDIDWEY 141
++Q +P +K L SIGG S F R F+ S ++ F G+DIDW++
Sbjct: 236 LKQAHPDLKILPSIGGWTLSDPFF--FMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWQF 293
Query: 142 PDNAQMS-DFGT---------LLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINP 191
P + + G+ L+ E R+ + + +G+ LT+A+S + +
Sbjct: 294 PGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGR-KYELTSAISAGKDKIDKVAY 352
Query: 192 TSAISNSLDWTNVMAYDFFYN-DDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQSGLS 250
A NS+D +M+YDF+ D + T A + PD + + +G+ A + G+
Sbjct: 353 NVA-QNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTT-VNGVNALLAQGVK 410
Query: 251 PKKIVLGFPFFGHSLQLANA--NNHGFWAPTSGVVNG----GTMSYKEIRQFIMSTNATK 304
P KIV+G +G N NN F +G V G G + Y++I MS
Sbjct: 411 PGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQY 470
Query: 305 VFNATVVSDYCYSGTT--WIGYDDTQSVNTKVKYAKDNGLLGYFAWQISQDDNWILS 359
++AT + Y + +T I +DD +SV K KY D L G F+W+I D+ IL+
Sbjct: 471 TYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADNGDILN 527
>pdb|1FFR|A Chain A, Crystal Structure Of Chitinase A Mutant Y390f Complexed
With Hexa-n- Acetylchitohexaose (nag)6
Length = 540
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 136/297 (45%), Gaps = 25/297 (8%)
Query: 83 VQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNF-HGLDIDWEY 141
++Q +P +K L SIGG S F R F+ S ++ F G+DIDWE+
Sbjct: 236 LKQAHPDLKILPSIGGWTLSDPFF--FMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEF 293
Query: 142 PDNAQMS-DFGT---------LLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINP 191
P + + G+ L+ E R+ + + +G+ LT+A+S + +
Sbjct: 294 PGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGR-KYELTSAISAGKDKIDKVAY 352
Query: 192 TSAISNSLDWTNVMAYDFFYN-DDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQSGLS 250
A NS+D +M++DF+ D + T A + PD + + +G+ A + G+
Sbjct: 353 NVA-QNSMDHIFLMSFDFYGAFDLKNLGHQTALNAPAWKPDTAYTT-VNGVNALLAQGVK 410
Query: 251 PKKIVLGFPFFGHSLQLANA--NNHGFWAPTSGVVNG----GTMSYKEIRQFIMSTNATK 304
P KIV+G +G N NN F +G V G G + Y++I MS
Sbjct: 411 PGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQY 470
Query: 305 VFNATVVSDYCYSGTT--WIGYDDTQSVNTKVKYAKDNGLLGYFAWQISQDDNWILS 359
++AT + Y + +T I +DD +SV K KY D L G F+W+I D+ IL+
Sbjct: 471 TYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADNGDILN 527
>pdb|1H0G|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0G|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0I|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
pdb|1H0I|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
Length = 499
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 87/388 (22%), Positives = 159/388 (40%), Gaps = 81/388 (20%)
Query: 39 FPVADI---DSILFTHLFCAFADLDSQNFQV-----TVSSENQAIFSSFTRTVQQKNPAV 90
FPV++I + TH+ +F D++S N + T ++ + + + T ++ NP++
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINS-NLECAWDPATNDAKARDVVNRLT-ALKAHNPSL 88
Query: 91 KALLSIGGG------NASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN 144
+ + SIGG S ++ ASR F S + + + F G+DIDWEYP
Sbjct: 89 RIMFSIGGWYYSNDLGVSHANYVNAVKTPASRTKFAQSCVRIMKDYGFDGVDIDWEYPQA 148
Query: 145 AQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVS------YSANYFGAINPTSAISNS 198
A++ F L E R+ + + + G+ AL ++ + + Y+ + + I
Sbjct: 149 AEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKL---AQIVAP 205
Query: 199 LDWTNVMAYDFFYNDDRTGSRITGPPAALFS---------------------------PD 231
LD+ N+M YD ++T AALF P
Sbjct: 206 LDYINLMTYDL----AGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPS 261
Query: 232 RSQVSGDSGIRA-WIQSGLSPKKIVLGFPFFGHSLQLANANNHGFWA----------PTS 280
++ D+ ++ + G+ KIV+G PF+G + + + N G ++ P++
Sbjct: 262 PFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPST 321
Query: 281 GVVNGGT-----------MSYKEIRQFIMSTNA-TKVFNATVVSDYCYSGTT--WIGYDD 326
G SY+++ Q + +++N + Y Y ++ YDD
Sbjct: 322 DYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDD 381
Query: 327 TQSVNTKVKYAKDNGLLGYFAWQISQDD 354
+S K KY K L G W + QD+
Sbjct: 382 AESFKYKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1E15|A Chain A, Chitinase B From Serratia Marcescens
pdb|1E15|B Chain B, Chitinase B From Serratia Marcescens
pdb|1E6R|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1E6R|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1GPF|A Chain A, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1GPF|B Chain B, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1UR8|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR8|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1W1P|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1P|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1T|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1T|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1V|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1V|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1Y|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1W1Y|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1O6I|A Chain A, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4.
pdb|1O6I|B Chain B, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4
Length = 499
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 87/388 (22%), Positives = 159/388 (40%), Gaps = 81/388 (20%)
Query: 39 FPVADI---DSILFTHLFCAFADLDSQNFQV-----TVSSENQAIFSSFTRTVQQKNPAV 90
FPV++I + TH+ +F D++S N + T ++ + + + T ++ NP++
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINS-NLECAWDPATNDAKARDVVNRLT-ALKAHNPSL 88
Query: 91 KALLSIGGG------NASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN 144
+ + SIGG S ++ ASR F S + + + F G+DIDWEYP
Sbjct: 89 RIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWEYPQA 148
Query: 145 AQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVS------YSANYFGAINPTSAISNS 198
A++ F L E R+ + + + G+ AL ++ + + Y+ + + I
Sbjct: 149 AEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKL---AQIVAP 205
Query: 199 LDWTNVMAYDFFYNDDRTGSRITGPPAALFS---------------------------PD 231
LD+ N+M YD ++T AALF P
Sbjct: 206 LDYINLMTYDL----AGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPS 261
Query: 232 RSQVSGDSGIRA-WIQSGLSPKKIVLGFPFFGHSLQLANANNHGFWA----------PTS 280
++ D+ ++ + G+ KIV+G PF+G + + + N G ++ P++
Sbjct: 262 PFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPST 321
Query: 281 GVVNGGT-----------MSYKEIRQFIMSTNA-TKVFNATVVSDYCYSGTT--WIGYDD 326
G SY+++ Q + +++N + Y Y ++ YDD
Sbjct: 322 DYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDD 381
Query: 327 TQSVNTKVKYAKDNGLLGYFAWQISQDD 354
+S K KY K L G W + QD+
Sbjct: 382 AESFKYKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1E6Z|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
pdb|1E6Z|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
Length = 498
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 87/388 (22%), Positives = 159/388 (40%), Gaps = 81/388 (20%)
Query: 39 FPVADI---DSILFTHLFCAFADLDSQNFQV-----TVSSENQAIFSSFTRTVQQKNPAV 90
FPV++I + TH+ +F D++S N + T ++ + + + T ++ NP++
Sbjct: 30 FPVSNITPAKAKQLTHINFSFLDINS-NLECAWDPATNDAKARDVVNRLT-ALKAHNPSL 87
Query: 91 KALLSIGGG------NASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN 144
+ + SIGG S ++ ASR F S + + + F G+DIDWEYP
Sbjct: 88 RIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWEYPQA 147
Query: 145 AQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVS------YSANYFGAINPTSAISNS 198
A++ F L E R+ + + + G+ AL ++ + + Y+ + + I
Sbjct: 148 AEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKL---AQIVAP 204
Query: 199 LDWTNVMAYDFFYNDDRTGSRITGPPAALFS---------------------------PD 231
LD+ N+M YD ++T AALF P
Sbjct: 205 LDYINLMTYDL----AGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPS 260
Query: 232 RSQVSGDSGIRA-WIQSGLSPKKIVLGFPFFGHSLQLANANNHGFWA----------PTS 280
++ D+ ++ + G+ KIV+G PF+G + + + N G ++ P++
Sbjct: 261 PFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPST 320
Query: 281 GVVNGGT-----------MSYKEIRQFIMSTNA-TKVFNATVVSDYCYSGTT--WIGYDD 326
G SY+++ Q + +++N + Y Y ++ YDD
Sbjct: 321 DYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDD 380
Query: 327 TQSVNTKVKYAKDNGLLGYFAWQISQDD 354
+S K KY K L G W + QD+
Sbjct: 381 AESFKYKAKYIKQQQLGGVMFWHLGQDN 408
>pdb|1NH6|A Chain A, Structure Of S. Marcescens Chitinase A, E315l, Complex
With Hexasaccharide
Length = 540
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 135/297 (45%), Gaps = 25/297 (8%)
Query: 83 VQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNF-HGLDIDWEY 141
++Q +P +K L SIGG S F R F+ S ++ F G+DIDW +
Sbjct: 236 LKQAHPDLKILPSIGGWTLSDPFF--FMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWLF 293
Query: 142 PDNAQMS-DFGT---------LLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINP 191
P + + G+ L+ E R+ + + +G+ LT+A+S + +
Sbjct: 294 PGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGR-KYELTSAISAGKDKIDKVAY 352
Query: 192 TSAISNSLDWTNVMAYDFFYN-DDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQSGLS 250
A NS+D +M+YDF+ D + T A + PD + + + G+ A + G+
Sbjct: 353 NVA-QNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVN-GVNALLAQGVK 410
Query: 251 PKKIVLGFPFFGHSLQLANA--NNHGFWAPTSGVVNG----GTMSYKEIRQFIMSTNATK 304
P KIV+G +G N NN F +G V G G + Y++I MS
Sbjct: 411 PGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIASQFMSGEWQY 470
Query: 305 VFNATVVSDYCYSGTT--WIGYDDTQSVNTKVKYAKDNGLLGYFAWQISQDDNWILS 359
++AT + Y + +T I +DD +SV K KY D L G F+W+I D+ IL+
Sbjct: 471 TYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADNGDILN 527
>pdb|1EIB|A Chain A, Crystal Structure Of Chitinase A Mutant D313a Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 135/297 (45%), Gaps = 25/297 (8%)
Query: 83 VQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNF-HGLDIDWEY 141
++Q +P +K L SIGG S F R F+ S ++ F G+DI WE+
Sbjct: 236 LKQAHPDLKILPSIGGWTLSDPFF--FMGDKVKRDRFVGSVKEFLQTWKFFDGVDIAWEF 293
Query: 142 PDNAQMS-DFGT---------LLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINP 191
P + + G+ L+ E R+ + + +G+ LT+A+S + +
Sbjct: 294 PGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGR-KYELTSAISAGKDKIDKVAY 352
Query: 192 TSAISNSLDWTNVMAYDFFYN-DDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQSGLS 250
A NS+D +M+YDF+ D + T A + PD + + +G+ A + G+
Sbjct: 353 NVA-QNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTT-VNGVNALLAQGVK 410
Query: 251 PKKIVLGFPFFGHSLQLANA--NNHGFWAPTSGVVNG----GTMSYKEIRQFIMSTNATK 304
P KIV+G +G N NN F +G V G G + Y++I MS
Sbjct: 411 PGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQY 470
Query: 305 VFNATVVSDYCYSGTT--WIGYDDTQSVNTKVKYAKDNGLLGYFAWQISQDDNWILS 359
++AT + Y + +T I +DD +SV K KY D L G F+W+I D+ IL+
Sbjct: 471 TYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADNGDILN 527
>pdb|1K9T|A Chain A, Chitinase A Complexed With Tetra-N-Acetylchitotriose
Length = 540
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 135/297 (45%), Gaps = 25/297 (8%)
Query: 83 VQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNF-HGLDIDWEY 141
++Q +P +K L SIGG S F R F+ S ++ F G+DIDWE+
Sbjct: 236 LKQAHPDLKILPSIGGWTLSDPFF--FMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEF 293
Query: 142 PDNAQMS-DFGT---------LLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINP 191
P + + G+ L+ E R+ + + +G+ LT+A+S + +
Sbjct: 294 PGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGR-KYELTSAISAGKDKIDKVAY 352
Query: 192 TSAISNSLDWTNVMAYDFFYN-DDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQSGLS 250
A NS+D +M+Y F+ D + T A + PD + + +G+ A + G+
Sbjct: 353 NVA-QNSMDHIFLMSYAFYGAFDLKNLGHQTALNAPAWKPDTAYTT-VNGVNALLAQGVK 410
Query: 251 PKKIVLGFPFFGHSLQLANA--NNHGFWAPTSGVVNG----GTMSYKEIRQFIMSTNATK 304
P KIV+G +G N NN F +G V G G + Y++I MS
Sbjct: 411 PGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQY 470
Query: 305 VFNATVVSDYCYSGTT--WIGYDDTQSVNTKVKYAKDNGLLGYFAWQISQDDNWILS 359
++AT + Y + +T I +DD +SV K KY D L G F+W+I D+ IL+
Sbjct: 471 TYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADNGDILN 527
>pdb|1E6N|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
pdb|1E6P|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6P|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6N|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
Length = 499
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/388 (22%), Positives = 159/388 (40%), Gaps = 81/388 (20%)
Query: 39 FPVADI---DSILFTHLFCAFADLDSQNFQV-----TVSSENQAIFSSFTRTVQQKNPAV 90
FPV++I + TH+ +F D++S N + T ++ + + + T ++ NP++
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINS-NLECAWDPATNDAKARDVVNRLT-ALKAHNPSL 88
Query: 91 KALLSIGGG------NASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN 144
+ + SIGG S ++ ASR F S + + + F G+DIDW+YP
Sbjct: 89 RIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWQYPQA 148
Query: 145 AQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVS------YSANYFGAINPTSAISNS 198
A++ F L E R+ + + + G+ AL ++ + + Y+ + + I
Sbjct: 149 AEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKL---AQIVAP 205
Query: 199 LDWTNVMAYDFFYNDDRTGSRITGPPAALFS---------------------------PD 231
LD+ N+M YD ++T AALF P
Sbjct: 206 LDYINLMTYDL----AGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPS 261
Query: 232 RSQVSGDSGIRA-WIQSGLSPKKIVLGFPFFGHSLQLANANNHGFWA----------PTS 280
++ D+ ++ + G+ KIV+G PF+G + + + N G ++ P++
Sbjct: 262 PFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPST 321
Query: 281 GVVNGGT-----------MSYKEIRQFIMSTNA-TKVFNATVVSDYCYSGTT--WIGYDD 326
G SY+++ Q + +++N + Y Y ++ YDD
Sbjct: 322 DYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDD 381
Query: 327 TQSVNTKVKYAKDNGLLGYFAWQISQDD 354
+S K KY K L G W + QD+
Sbjct: 382 AESFKYKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1UR9|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR9|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
Length = 499
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/388 (22%), Positives = 159/388 (40%), Gaps = 81/388 (20%)
Query: 39 FPVADI---DSILFTHLFCAFADLDSQNFQV-----TVSSENQAIFSSFTRTVQQKNPAV 90
FPV++I + TH+ +F D++S N + T ++ + + + T ++ NP++
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINS-NLECAWDPATNDAKARDVVNRLT-ALKAHNPSL 88
Query: 91 KALLSIGGG------NASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN 144
+ + SIGG S ++ ASR F S + + + F G+DI+WEYP
Sbjct: 89 RIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDINWEYPQA 148
Query: 145 AQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVS------YSANYFGAINPTSAISNS 198
A++ F L E R+ + + + G+ AL ++ + + Y+ + + I
Sbjct: 149 AEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKL---AQIVAP 205
Query: 199 LDWTNVMAYDFFYNDDRTGSRITGPPAALFS---------------------------PD 231
LD+ N+M YD ++T AALF P
Sbjct: 206 LDYINLMTYDL----AGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPS 261
Query: 232 RSQVSGDSGIRA-WIQSGLSPKKIVLGFPFFGHSLQLANANNHGFWA----------PTS 280
++ D+ ++ + G+ KIV+G PF+G + + + N G ++ P++
Sbjct: 262 PFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPST 321
Query: 281 GVVNGGT-----------MSYKEIRQFIMSTNA-TKVFNATVVSDYCYSGTT--WIGYDD 326
G SY+++ Q + +++N + Y Y ++ YDD
Sbjct: 322 DYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDD 381
Query: 327 TQSVNTKVKYAKDNGLLGYFAWQISQDD 354
+S K KY K L G W + QD+
Sbjct: 382 AESFKYKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1OGB|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGB|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGG|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
pdb|1OGG|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
Length = 499
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/388 (22%), Positives = 159/388 (40%), Gaps = 81/388 (20%)
Query: 39 FPVADI---DSILFTHLFCAFADLDSQNFQV-----TVSSENQAIFSSFTRTVQQKNPAV 90
FPV++I + TH+ +F D++S N + T ++ + + + T ++ NP++
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINS-NLECAWDPATNDAKARDVVNRLT-ALKAHNPSL 88
Query: 91 KALLSIGGG------NASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN 144
+ + SIGG S ++ ASR F S + + + F G+DI+WEYP
Sbjct: 89 RIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDINWEYPQA 148
Query: 145 AQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVS------YSANYFGAINPTSAISNS 198
A++ F L E R+ + + + G+ AL ++ + + Y+ + + I
Sbjct: 149 AEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKL---AQIVAP 205
Query: 199 LDWTNVMAYDFFYNDDRTGSRITGPPAALFS---------------------------PD 231
LD+ N+M YD ++T AALF P
Sbjct: 206 LDYINLMTYDL----AGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPS 261
Query: 232 RSQVSGDSGIRA-WIQSGLSPKKIVLGFPFFGHSLQLANANNHGFWA----------PTS 280
++ D+ ++ + G+ KIV+G PF+G + + + N G ++ P++
Sbjct: 262 PFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPST 321
Query: 281 GVVNGGT-----------MSYKEIRQFIMSTNA-TKVFNATVVSDYCYSGTT--WIGYDD 326
G SY+++ Q + +++N + Y Y ++ YDD
Sbjct: 322 DYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDD 381
Query: 327 TQSVNTKVKYAKDNGLLGYFAWQISQDD 354
+S K KY K L G W + QD+
Sbjct: 382 AESFKYKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1GOI|A Chain A, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
pdb|1GOI|B Chain B, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
Length = 499
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/388 (22%), Positives = 159/388 (40%), Gaps = 81/388 (20%)
Query: 39 FPVADI---DSILFTHLFCAFADLDSQNFQV-----TVSSENQAIFSSFTRTVQQKNPAV 90
FPV++I + TH+ +F D++S N + T ++ + + + T ++ NP++
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINS-NLECAWDPATNDAKARDVVNRLT-ALKAHNPSL 88
Query: 91 KALLSIGGG------NASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN 144
+ + SIGG S ++ ASR F S + + + F G++IDWEYP
Sbjct: 89 RIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVNIDWEYPQA 148
Query: 145 AQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVS------YSANYFGAINPTSAISNS 198
A++ F L E R+ + + + G+ AL ++ + + Y+ + + I
Sbjct: 149 AEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKL---AQIVAP 205
Query: 199 LDWTNVMAYDFFYNDDRTGSRITGPPAALFS---------------------------PD 231
LD+ N+M YD ++T AALF P
Sbjct: 206 LDYINLMTYDL----AGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPS 261
Query: 232 RSQVSGDSGIRA-WIQSGLSPKKIVLGFPFFGHSLQLANANNHGFWA----------PTS 280
++ D+ ++ + G+ KIV+G PF+G + + + N G ++ P++
Sbjct: 262 PFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPST 321
Query: 281 GVVNGGT-----------MSYKEIRQFIMSTNA-TKVFNATVVSDYCYSGTT--WIGYDD 326
G SY+++ Q + +++N + Y Y ++ YDD
Sbjct: 322 DYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDD 381
Query: 327 TQSVNTKVKYAKDNGLLGYFAWQISQDD 354
+S K KY K L G W + QD+
Sbjct: 382 AESFKYKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|3ARS|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure Of Mutant
W275g
pdb|3ART|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Dequalinium
pdb|3ARU|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Pentoxifylline
pdb|3AS0|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Sanguinarine
pdb|3AS1|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Chelerythrine
pdb|3AS2|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Propentofylline
pdb|3AS3|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With 2-(Imidazolin-
2-Yl)-5-Isothiocyanatobenzofuran
Length = 584
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 80/332 (24%), Positives = 143/332 (43%), Gaps = 64/332 (19%)
Query: 83 VQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFH-GLDIDWEY 141
++Q+NP +K + SIGGG S + + + +R +F+ S ++ F+ G+DIDWE+
Sbjct: 238 LKQRNPDLKIIPSIGGGTLSDPFYDFVDKK--NRDTFVASVKKFLKTWKFYDGVDIDWEF 295
Query: 142 P-------DNAQMSDFG----TLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAIN 190
P D + G L+ E R + +G+ LT+A+ + ++
Sbjct: 296 PGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGR-TYELTSAIGVGYDKIEDVD 354
Query: 191 PTSAISNSLDWTNVMAYDFFYN-DDRTGSRITGPPAALFSPDRSQVSG------------ 237
A+ +D+ M YDF+ ++ G + + P + G
Sbjct: 355 YADAVQ-YMDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPA 413
Query: 238 ---DSGIRAWIQSGLSPKKIVLGFPFFGHSLQ------LANANNHGFWAPTSGVVNG--- 285
D+GI+ + G+ K+VLG +G + L + N+ P +G G
Sbjct: 414 YTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPND-----PMTGTATGKLK 468
Query: 286 ----------GTMSYKEIRQFIMSTNATKV------FNATVVSDYCYSGTT--WIGYDDT 327
G + YK I+ F++ N T + ++A + + ++ +T I +DD
Sbjct: 469 GSTAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGELITFDDH 528
Query: 328 QSVNTKVKYAKDNGLLGYFAWQISQDDNWILS 359
+SV K YAK GL G F+W+I D+ IL+
Sbjct: 529 RSVLAKGNYAKSLGLAGLFSWEIDADNGDILN 560
>pdb|3B8S|A Chain A, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3B8S|B Chain B, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3ARO|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure
pdb|3ARP|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Dequalinium
pdb|3ARQ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Idarubicin
pdb|3ARR|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Pentoxifylline
pdb|3ARV|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Sanguinarine
pdb|3ARW|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Chelerythrine
pdb|3ARX|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Propentofylline
pdb|3ARY|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
pdb|3ARZ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
Length = 584
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 142/332 (42%), Gaps = 64/332 (19%)
Query: 83 VQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFH-GLDIDWEY 141
++Q+NP +K + SIGG S + + + +R +F+ S ++ F+ G+DIDWE+
Sbjct: 238 LKQRNPDLKIIPSIGGWTLSDPFYDFVDKK--NRDTFVASVKKFLKTWKFYDGVDIDWEF 295
Query: 142 P-------DNAQMSDFG----TLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAIN 190
P D + G L+ E R + +G+ LT+A+ + ++
Sbjct: 296 PGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGR-TYELTSAIGVGYDKIEDVD 354
Query: 191 PTSAISNSLDWTNVMAYDFFYN-DDRTGSRITGPPAALFSPDRSQVSG------------ 237
A+ +D+ M YDF+ ++ G + + P + G
Sbjct: 355 YADAVQ-YMDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPA 413
Query: 238 ---DSGIRAWIQSGLSPKKIVLGFPFFGHSLQ------LANANNHGFWAPTSGVVNG--- 285
D+GI+ + G+ K+VLG +G + L + N+ P +G G
Sbjct: 414 YTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPND-----PMTGTATGKLK 468
Query: 286 ----------GTMSYKEIRQFIMSTNATKV------FNATVVSDYCYSGTT--WIGYDDT 327
G + YK I+ F++ N T + ++A + + ++ +T I +DD
Sbjct: 469 GSTAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGELITFDDH 528
Query: 328 QSVNTKVKYAKDNGLLGYFAWQISQDDNWILS 359
+SV K YAK GL G F+W+I D+ IL+
Sbjct: 529 RSVLAKGNYAKSLGLAGLFSWEIDADNGDILN 560
>pdb|3B9A|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Hexasaccharide
pdb|3B9D|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Pentasaccharide
pdb|3B9E|A Chain A, Crystal Structure Of Inactive Mutant E315m Chitinase A
From Vibrio Harveyi
Length = 584
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 141/332 (42%), Gaps = 64/332 (19%)
Query: 83 VQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFH-GLDIDWEY 141
++Q+NP +K + SIGG S + + + +R +F+ S ++ F+ G+DIDW +
Sbjct: 238 LKQRNPDLKIIPSIGGWTLSDPFYDFVDKK--NRDTFVASVKKFLKTWKFYDGVDIDWMF 295
Query: 142 P-------DNAQMSDFG----TLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAIN 190
P D + G L+ E R + +G+ LT+A+ + ++
Sbjct: 296 PGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGR-TYELTSAIGVGYDKIEDVD 354
Query: 191 PTSAISNSLDWTNVMAYDFFYN-DDRTGSRITGPPAALFSPDRSQVSG------------ 237
A+ +D+ M YDF+ ++ G + + P + G
Sbjct: 355 YADAVQ-YMDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPA 413
Query: 238 ---DSGIRAWIQSGLSPKKIVLGFPFFGHSLQ------LANANNHGFWAPTSGVVNG--- 285
D+GI+ + G+ K+VLG +G + L + N+ P +G G
Sbjct: 414 YTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPND-----PMTGTATGKLK 468
Query: 286 ----------GTMSYKEIRQFIMSTNATKV------FNATVVSDYCYSGTT--WIGYDDT 327
G + YK I+ F++ N T + ++A + + ++ +T I +DD
Sbjct: 469 GSTAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGELITFDDH 528
Query: 328 QSVNTKVKYAKDNGLLGYFAWQISQDDNWILS 359
+SV K YAK GL G F+W+I D+ IL+
Sbjct: 529 RSVLAKGNYAKSLGLAGLFSWEIDADNGDILN 560
>pdb|1JND|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
pdb|1JNE|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
Length = 420
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 89/386 (23%), Positives = 149/386 (38%), Gaps = 80/386 (20%)
Query: 40 PVADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFS---SFTRTVQQKNPAVKALLSI 96
P +I +HL +A L +N Q +EN I+ S ++++K P +K LLS+
Sbjct: 24 PDLEIALQFCSHLVYGYAGLRGENLQAYSMNENLDIYKHQFSEVTSLKRKYPHLKVLLSV 83
Query: 97 GGG-----NASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSDFG 151
GG + + + + + FI S+ L ++ F GLD+ +++P N G
Sbjct: 84 GGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVKTYGFDGLDLAYQFPKNKPRKVHG 143
Query: 152 TLLTEWRS-----------------------AVAAEARSSGKP-ALLLTAAVSYSAN--- 184
L W+S A+ + + S + LL+ V + N
Sbjct: 144 DLGLAWKSIKKLFTGDFIVDPHAALHKEQFTALVRDVKDSLRADGFLLSLTVLPNVNSTW 203
Query: 185 YFGAINPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPP---AALFSPDRSQ-----VS 236
YF A++ +D+ N+ +DF T +R A ++ PD S+ ++
Sbjct: 204 YFD----IPALNGLVDFVNLATFDFL-----TPARNPEEADYSAPIYHPDGSKDRLAHLN 254
Query: 237 GDSGIRAWIQSGLSPKKIVLGFPFFGHSLQL---ANANNHGFWAPTSGVV-------NGG 286
D + W+ G KI LG +G++ +L + TSG G
Sbjct: 255 ADFQVEYWLSQGFPSNKINLGVATYGNAWKLTKDSGLEGVPVVPETSGPAPEGFQSQKPG 314
Query: 287 TMSYKEI--------RQFIMS--------TNATKVFNATVVS--DYCYSGTTWIGYDDTQ 328
+SY EI QF+ ++ TK F D + W+ YDD
Sbjct: 315 LLSYAEICGKLSNPQNQFLKGNESPLRRVSDPTKRFGGIAYRPVDGQITEGIWVSYDDPD 374
Query: 329 SVNTKVKYAKDNGLLGYFAWQISQDD 354
S + K YA+ L G + +S DD
Sbjct: 375 SASNKAAYARVKNLGGVALFDLSYDD 400
>pdb|3QOK|A Chain A, Crystal Structure Of Putative Chitinase Ii From Klebsiella
Pneumoniae
Length = 420
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 92/381 (24%), Positives = 148/381 (38%), Gaps = 70/381 (18%)
Query: 40 PVADIDSI---LFTHLFCAFA-----DLDSQN---------FQVTVSSENQAIFSSFTRT 82
P DID + THL +F + D N ++ +S + QA
Sbjct: 42 PGGDIDKLDVRQITHLNYSFGLIYNDEKDETNAALKDPAHLHEIWLSPKVQADLQKLP-A 100
Query: 83 VQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYP 142
++++NP +K LLS+GG A F+ A+ A SR FI S+ + + G+D+DWE+P
Sbjct: 101 LRKQNPDLKVLLSVGGWGA--RGFSGAAATAESRAVFIRSAQKIIQQYGLDGIDLDWEFP 158
Query: 143 DN----------AQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPT 192
N A +F LL R AV + L+T AV +A +
Sbjct: 159 VNGAWGLVASQPADRDNFTALLKSLREAVGEQK--------LVTIAVGANAESPKSWVDV 210
Query: 193 SAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQSGLSPK 252
A++ L++ N+ YD Y S + + S D + ++ +GL P
Sbjct: 211 KAVAPVLNYINLXTYDXAYGTQYFNSNLYDSSHWPTVAAADKYSADFVVNNYLAAGLKPS 270
Query: 253 KIVLGFPFFGHSLQL----------ANANNHGFWAPTSG---VVNGGTMSYKEIRQFIMS 299
+ LG F+G + A+A N+ P G + ++ Y + +
Sbjct: 271 QXNLGIGFYGRVPKRAVEPGIDWTKADAQNNPVTQPYFGPQQIALFASLGYDLSKDTYVK 330
Query: 300 TN--ATKVFN-------------ATV--VSDYCYSGTTW--IGYDDTQSVNTKVKYAKDN 340
N K+ N A V +S G + Y++ +SV K Y K
Sbjct: 331 YNDIVGKLLNDPQKRFTEHWDDEAKVPWLSVQSAEGKPLFALSYENPRSVAIKADYIKAK 390
Query: 341 GLLGYFAWQISQDDNWILSRE 361
GL G W+ DD L+R+
Sbjct: 391 GLAGAXFWEYGADDQNQLARQ 411
>pdb|4A5Q|A Chain A, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|B Chain B, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|C Chain C, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|D Chain D, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|E Chain E, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
Length = 546
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 143/355 (40%), Gaps = 40/355 (11%)
Query: 35 SGSNFPVADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALL 94
G PV D D + + C F ++ + + E R + + + ++ L
Sbjct: 156 KGKTIPV-DPDGAVLASINCGFTKWEAGDANERYNQEKAKGLLGGFRLLHEADKELEFSL 214
Query: 95 SIGGGNASKESFAAMASQAASRKSFIDSSINL-ARSLNFHGLDIDWEYPDNAQMSDFGTL 153
SIGG + S F+ +A R +F++ + R F LDIDWEYP + + +
Sbjct: 215 SIGGWSMSG-LFSEIAKDEILRTNFVEGIKDFFQRFPMFSHLDIDWEYPGSIGAGNPNSP 273
Query: 154 LTEWRSAVAAEARSSGKPALLLTAAVSYSAN--YFGAINPTSAISNSLDWTNVMAYDFFY 211
A+ + + K + L +++ SA+ A N + + + N+M YDFF
Sbjct: 274 DDGANFAILIQQITDAKISNLKGISIASSADPAKIDAANIPALMDAGVTGINLMTYDFFT 333
Query: 212 NDDRTGSRITG---PPAALFSPDRSQVSGDSGIRAWI-QSGLSPKKIVLGFPFFGHSLQL 267
D S T P+ ++ S+ S D + I + + PK I +G+ + + +
Sbjct: 334 LGDGKLSHHTNIYRDPSDVY----SKYSIDDAVTHLIDEKKVDPKAIFIGYAGYTRNAKN 389
Query: 268 ANANNHGFWAPTSGVVNG---------GTMSYK-----EIRQFIMS------TNATKVFN 307
A P+ + G G+ Y +I M N K+ +
Sbjct: 390 ATITTS---IPSEEALKGTYTDANQTLGSFEYSVLEWTDIICHYMDFEKGEGRNGYKLVH 446
Query: 308 ATVV-SDYCYSGTT--WIGYDDTQSVNTKVKYAKDNGLLGYFAWQISQDDNWILS 359
V +DY YS T +I D +SV K +Y KD GL G F W Q DN IL+
Sbjct: 447 DKVAKADYLYSEATKVFISLDTPRSVRDKGRYVKDKGLGGLFIWSGDQ-DNGILT 500
>pdb|3OA5|A Chain A, The Structure Of Chi1, A Chitinase From Yersinia
Entomophaga
pdb|3OA5|B Chain B, The Structure Of Chi1, A Chitinase From Yersinia
Entomophaga
Length = 574
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 143/355 (40%), Gaps = 40/355 (11%)
Query: 35 SGSNFPVADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALL 94
G PV D D + + C F ++ + + E R + + + ++ L
Sbjct: 184 KGKTIPV-DPDGAVLASINCGFTKWEAGDANERYNQEKAKGLLGGFRLLHEADKELEFSL 242
Query: 95 SIGGGNASKESFAAMASQAASRKSFIDSSINL-ARSLNFHGLDIDWEYPDNAQMSDFGTL 153
SIGG + S F+ +A R +F++ + R F LDIDWEYP + + +
Sbjct: 243 SIGGWSMSG-LFSEIAKDEILRTNFVEGIKDFFQRFPMFSHLDIDWEYPGSIGAGNPNSP 301
Query: 154 LTEWRSAVAAEARSSGKPALLLTAAVSYSAN--YFGAINPTSAISNSLDWTNVMAYDFFY 211
A+ + + K + L +++ SA+ A N + + + N+M YDFF
Sbjct: 302 DDGANFAILIQQITDAKISNLKGISIASSADPAKIDAANIPALMDAGVTGINLMTYDFFT 361
Query: 212 NDDRTGSRITG---PPAALFSPDRSQVSGDSGIRAWI-QSGLSPKKIVLGFPFFGHSLQL 267
D S T P+ ++ S+ S D + I + + PK I +G+ + + +
Sbjct: 362 LGDGKLSHHTNIYRDPSDVY----SKYSIDDAVTHLIDEKKVDPKAIFIGYAGYTRNAKN 417
Query: 268 ANANNHGFWAPTSGVVNG---------GTMSYK-----EIRQFIMS------TNATKVFN 307
A P+ + G G+ Y +I M N K+ +
Sbjct: 418 ATITTS---IPSEEALKGTYTDANQTLGSFEYSVLEWTDIICHYMDFEKGEGRNGYKLVH 474
Query: 308 ATVV-SDYCYSGTT--WIGYDDTQSVNTKVKYAKDNGLLGYFAWQISQDDNWILS 359
V +DY YS T +I D +SV K +Y KD GL G F W Q DN IL+
Sbjct: 475 DKVAKADYLYSEATKVFISLDTPRSVRDKGRYVKDKGLGGLFIWSGDQ-DNGILT 528
>pdb|4DWS|A Chain A, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 125/308 (40%), Gaps = 41/308 (13%)
Query: 81 RTVQQKNPAVKALL----SIGGGNASKESFAAMASQAASRKSFIDSSINL-ARSLNFHGL 135
R +Q K A+ L SIGG + S F+A+A R+ F+ S ++ R F +
Sbjct: 199 RELQXKAHAMGHKLDLAFSIGGWSLSS-YFSALAENPDERRVFVASVVDFFVRFPMFSCV 257
Query: 136 DIDWEYP----DNAQMS------DFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANY 185
DIDWEYP D +S ++ L+ E RSA+ + S + + + A S
Sbjct: 258 DIDWEYPGGGGDEGNISSDXDGENYVLLIKELRSALDSRFGYSNRXEI--SIACSGVXAX 315
Query: 186 FGAINPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALFSPDR--SQVSGDSGIRA 243
N ++N LD +M+YDFF + G L+SP Q D A
Sbjct: 316 LKXSNIDQLVANGLDNIYLMSYDFF---GTIWADYIGHHTNLYSPKDPGEQELFDLSAEA 372
Query: 244 WI-----QSGLSPKKIVLGFPFFGHSLQLANANNHGFW--APTSGVVNGGTMSYKEI--- 293
I + G+ +KI LG+ +G S + + P G + G + +I
Sbjct: 373 AIDYLHNELGIPMEKIHLGYANYGRSAVGGDLTTRQYTXNGPALGTMENGAPEFFDIVXN 432
Query: 294 -----RQFIMSTNATKVFNAT-VVSDYCYSGTT--WIGYDDTQSVNTKVKYAKDNGLLGY 345
M N + T +D+ +S +I D ++V K +YA N L G
Sbjct: 433 YMDAEHSLSMGKNGFVLMTDTNADADFLFSEAXGHFISLDTPRTVXQKGEYAAKNKLGGV 492
Query: 346 FAWQISQD 353
F+W QD
Sbjct: 493 FSWSGDQD 500
>pdb|4DWS|C Chain C, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 125/308 (40%), Gaps = 41/308 (13%)
Query: 81 RTVQQKNPAVKALL----SIGGGNASKESFAAMASQAASRKSFIDSSINL-ARSLNFHGL 135
R +Q+K A+ L SIGG + S F+A+A R+ F+ S ++ R F +
Sbjct: 199 RELQKKAHAMGHKLDLAFSIGGWSLSS-YFSALAENPDERRVFVASVVDFFVRFPMFSCV 257
Query: 136 DIDWEYP----DNAQMS------DFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANY 185
DIDWEYP D +S ++ L+ E RSA+ + S + + + A S
Sbjct: 258 DIDWEYPGGGGDEGNISSDXDGENYVLLIKELRSALDSRFGYSNRXEI--SIACSGVXAX 315
Query: 186 FGAINPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALFSPDR--SQVSGDSGIRA 243
N ++N LD +M+YDFF + G L+SP Q D A
Sbjct: 316 LKKSNIDQLVANGLDNIYLMSYDFF---GTIWADYIGHHTNLYSPKDPGEQELFDLSAEA 372
Query: 244 WI-----QSGLSPKKIVLGFPFFGHSLQLANANNHGFW--APTSGVVNGGTMSYKEI--- 293
I + G+ + I LG+ +G S + + P G + G + +I
Sbjct: 373 AIDYLHNELGIPMEXIHLGYANYGRSAVGGDLTTRQYTXNGPALGTMENGAPEFFDIVXN 432
Query: 294 -----RQFIMSTNATKVFNAT-VVSDYCYSGTT--WIGYDDTQSVNTKVKYAKDNGLLGY 345
M N + T +D+ +S +I D ++V K +YA N L G
Sbjct: 433 YMDAEHSLSMGKNGFVLMTDTNADADFLFSEAXGHFISLDTPRTVKQKGEYAAKNKLGGV 492
Query: 346 FAWQISQD 353
F+W QD
Sbjct: 493 FSWSGDQD 500
>pdb|4DWS|D Chain D, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 77/307 (25%), Positives = 123/307 (40%), Gaps = 39/307 (12%)
Query: 81 RTVQQKNPAVKALLSIG---GGNASKESFAAMASQAASRKSFIDSSINL-ARSLNFHGLD 136
R +Q+K A+ L + GG + F+A+A R+ F+ S ++ R F +D
Sbjct: 199 RELQKKAHAMGHKLDLAFSIGGWSLSSYFSALAENPDERRVFVASVVDFFVRFPMFSCVD 258
Query: 137 IDWEYP----DNAQMS------DFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYF 186
IDWEYP D +S ++ L+ E RSA+ + S + + + A S
Sbjct: 259 IDWEYPGGGGDEGNISSDKDGENYVLLIKELRSALDSRFGYSNRXEI--SIACSGVXAXL 316
Query: 187 GAINPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALFSPDR--SQVSGDSGIRAW 244
N ++N LD +M+YDFF + G L+SP Q D A
Sbjct: 317 KKSNIDQLVANGLDNIYLMSYDFF---GTIWADYIGHHTNLYSPKDPGEQELFDLSAEAA 373
Query: 245 I-----QSGLSPKKIVLGFPFFGHSLQLANANNHGFW--APTSGVVNGGTMSYKEI---- 293
I + G+ + I LG+ +G S + + P G + G + +I
Sbjct: 374 IDYLHNELGIPMEXIHLGYANYGRSAVGGDLTTRQYTXNGPALGTMENGAPEFFDIVKNY 433
Query: 294 ----RQFIMSTNATKVFNAT-VVSDYCYSGTT--WIGYDDTQSVNTKVKYAKDNGLLGYF 346
M N + T +D+ +S +I D ++V K +YA N L G F
Sbjct: 434 MDAEHSLSMGKNGFVLMTDTNADADFLFSEAKGHFISLDTPRTVKQKGEYAAKNKLGGVF 493
Query: 347 AWQISQD 353
+W QD
Sbjct: 494 SWSGDQD 500
>pdb|4DWS|B Chain B, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 125/308 (40%), Gaps = 41/308 (13%)
Query: 81 RTVQQKNPAVKALL----SIGGGNASKESFAAMASQAASRKSFIDSSINL-ARSLNFHGL 135
R +Q+K A+ L SIGG + S F+A+A R+ F+ S ++ R F +
Sbjct: 199 RELQKKAHAMGHKLDLAFSIGGWSLSS-YFSALAENPDERRVFVASVVDFFVRFPMFSCV 257
Query: 136 DIDWEYP----DNAQMS------DFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANY 185
DIDWEYP D +S ++ L+ E RSA+ + S + + + A S
Sbjct: 258 DIDWEYPGGGGDEGNISSDXDGENYVLLIXELRSALDSRFGYSNRXEI--SIACSGVXAX 315
Query: 186 FGAINPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALFSPDR--SQVSGDSGIRA 243
N ++N LD +M+YDFF + G L+SP Q D A
Sbjct: 316 LKXSNIDQLVANGLDNIYLMSYDFF---GTIWADYIGHHTNLYSPKDPGEQELFDLSAEA 372
Query: 244 WI-----QSGLSPKKIVLGFPFFGHSLQLANANNHGFW--APTSGVVNGGTMSYKEI--- 293
I + G+ + I LG+ +G S + + P G + G + +I
Sbjct: 373 AIDYLHNELGIPMEXIHLGYANYGRSAVGGDLTTRQYTXNGPALGTMENGAPEFFDIVKN 432
Query: 294 -----RQFIMSTNATKVFNAT-VVSDYCYSGTT--WIGYDDTQSVNTKVKYAKDNGLLGY 345
M N + T +D+ +S +I D ++V K +YA N L G
Sbjct: 433 YMDAEHSLSMGKNGFVLMTDTNADADFLFSEAKGHFISLDTPRTVKQKGEYAAKNKLGGV 492
Query: 346 FAWQISQD 353
F+W QD
Sbjct: 493 FSWSGDQD 500
>pdb|3CO4|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
pdb|3FND|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
Length = 312
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 124/331 (37%), Gaps = 56/331 (16%)
Query: 33 WFSGSNFPVADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKA 92
W S FP I+ TH+ +FA + + + ++ + I S T + N VK
Sbjct: 15 WEFESLFPT--IEWKYLTHINASFARVKADG-TLNINPVRKRI-ESVRETAHKHN--VKI 68
Query: 93 LLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSDFGT 152
L+S+ S F + +RK I I + G DID+E DN +F +
Sbjct: 69 LISLAKN--SPGEFTTAINDPKARKELIQQIIAFTKEYKLDGFDIDYEEYDNWD-KNFPS 125
Query: 153 LLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFFYN 212
LL R A+ ++ L T AV+ +N + D+ N+ +YD
Sbjct: 126 LLVFARGLYLAKEKNX-----LXTCAVNSR-----WLNYGTEWEQYFDYINLXSYD---- 171
Query: 213 DDRTGSRITGPPAALFSPDRSQVSGDSGIRAW-IQSGLSPKKIVLGFPFFGHSLQLANAN 271
T P S D ++ W Q S KIV G PF+G+S +
Sbjct: 172 ----RGAFTDKPVQHASYDDFV----KDLKYWNEQCRASKSKIVGGLPFYGYSWE----- 218
Query: 272 NHGFWAPTSGVVNGGTMSYKEIRQFIMSTNATKVFNATVVSDYCYSGTTWIGYDDTQSVN 331
G V+ ++R S + N D G T+ Y+ ++
Sbjct: 219 -----ESLQGAVD-------DVRGIRYSGILKHLGNEAADKDNI--GKTY--YNGRPTIA 262
Query: 332 TKVKYAKDNGLLGYFAWQISQD---DNWILS 359
K K+ K+N G WQ+ QD DN+ L
Sbjct: 263 NKCKFIKENDYAGVXIWQLFQDAHNDNYDLK 293
>pdb|3SIM|A Chain A, Crystallographic Structure Analysis Of Family 18 Chitinase
From Crocus Vernus
pdb|3SIM|B Chain B, Crystallographic Structure Analysis Of Family 18 Chitinase
From Crocus Vernus
Length = 275
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 83 VQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSI----NLARSLNFHGLDID 138
++ +P V+ +S+GG + + + QAAS S++ +++ + + N G+DID
Sbjct: 69 IKSSHPNVRVAVSLGGASVGSNT---VQFQAASVDSWVSNAVTSLTRIIQRYNLDGIDID 125
Query: 139 WEYPDNAQMSDF----GTLLTEWR 158
+E+ N + F G L+T +
Sbjct: 126 YEHFQNTDKNTFAECIGRLITTLK 149
>pdb|3N11|A Chain A, Crystal Stricture Of Wild-Type Chitinase From Bacillus
Cereus Nctu2
pdb|3N12|A Chain A, Crystal Stricture Of Chitinase In Complex With Zinc Atoms
From Bacillus Cereus Nctu2
Length = 333
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 86 KNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWE 140
K+ K +LSIGG N + A++ FI+S +L F G+DID E
Sbjct: 69 KSKGKKVVLSIGGQNG-----VVLLPDNAAKDRFINSIQSLIDKYGFDGIDIDLE 118
>pdb|3EBV|A Chain A, Crystal Structure Of Putative Chitinase A From
Streptomyces Coelicolor
Length = 302
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 41 VADIDSILFTHLFCAFADLDSQNFQVTVSSENQAI----FSSFTRTVQQKNPA-VKALLS 95
++D+ S + + AFAD + VT + ++ + F V+ K A K ++S
Sbjct: 23 ISDVPSA-YDIIAVAFADATTTPGAVTFNLDSAGLGGYTVDQFKADVRAKQAAGKKVIIS 81
Query: 96 IGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWE 140
+GG E + +AS +F +S ++ R F G+DID E
Sbjct: 82 VGG-----EKGTVSVNSSASATNFANSVYSVXREYGFDGVDIDLE 121
>pdb|3N15|A Chain A, Crystal Stricture Of E145q Chitinase In Complex With Nag
From Bacillus Cereus Nctu2
Length = 333
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 86 KNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWE 140
K+ K +LSIGG N + A++ FI+S +L F G+DID +
Sbjct: 69 KSKGKKVVLSIGGQNG-----VVLLPDNAAKDRFINSIQSLIDKYGFDGIDIDLQ 118
>pdb|3N17|A Chain A, Crystal Stricture Of E145qY227F CHITINASE IN COMPLEX WITH
NAG FROM Bacillus Cereus Nctu2
Length = 333
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 86 KNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWE 140
K+ K +LSIGG N + A++ FI+S +L F G+DID +
Sbjct: 69 KSKGKKVVLSIGGQNG-----VVLLPDNAAKDRFINSIQSLIDKYGFDGIDIDLQ 118
>pdb|3IAN|A Chain A, Crystal Structure Of A Chitinase From Lactococcus Lactis
Subsp. Lactis
Length = 321
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Query: 77 SSFTRTVQQKNPAVKA-LLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGL 135
+ F + + N K+ L+++GG +A E + + F++ I L + F GL
Sbjct: 66 TEFRAEISKLNAEGKSVLIALGGADAHIEL------KKSQESDFVNEIIRLVDTYGFDGL 119
Query: 136 DIDWEYPDNAQMSDFGTLLTEWRSAVAAEARSSGKPALLLTA 177
DID E + +D T++ V R GK ++ A
Sbjct: 120 DIDLEQA-AIEAADNQTVIPSALKKVKDHYRKDGKNFMITMA 160
>pdb|3N18|A Chain A, Crystal Stricture Of E145gY227F CHITINASE IN COMPLEX WITH
NAG FROM Bacillus Cereus Nctu2
pdb|3N1A|A Chain A, Crystal Stricture Of E145gY227F CHITINASE IN COMPLEX WITH
CYCLO-(L- His-L-Pro) From Bacillus Cereus Nctu2
Length = 333
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 86 KNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDID 138
K+ K +LSIGG N + A++ FI+S +L F G+DID
Sbjct: 69 KSKGKKVVLSIGGQNG-----VVLLPDNAAKDRFINSIQSLIDKYGFDGIDID 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.129 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,230,578
Number of Sequences: 62578
Number of extensions: 400285
Number of successful extensions: 1284
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1074
Number of HSP's gapped (non-prelim): 92
length of query: 361
length of database: 14,973,337
effective HSP length: 100
effective length of query: 261
effective length of database: 8,715,537
effective search space: 2274755157
effective search space used: 2274755157
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)