Query 037639
Match_columns 361
No_of_seqs 171 out of 1399
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 02:59:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037639.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037639hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02879 GH18_plant_chitinase_c 100.0 3.6E-66 7.8E-71 474.2 34.1 292 26-359 2-299 (299)
2 cd02872 GH18_chitolectin_chito 100.0 4.9E-66 1.1E-70 488.1 33.5 315 29-355 1-343 (362)
3 cd02873 GH18_IDGF The IDGF's ( 100.0 4.6E-63 9.9E-68 471.5 33.2 317 28-355 1-394 (413)
4 smart00636 Glyco_18 Glycosyl h 100.0 3.7E-62 8.1E-67 457.3 33.5 314 28-353 1-334 (334)
5 KOG2806 Chitinase [Carbohydrat 100.0 1.4E-61 3E-66 462.5 34.4 331 25-359 56-404 (432)
6 cd02878 GH18_zymocin_alpha Zym 100.0 2.4E-61 5.2E-66 450.8 30.4 305 28-353 1-345 (345)
7 cd06548 GH18_chitinase The GH1 100.0 2E-60 4.3E-65 441.8 31.8 283 29-353 1-322 (322)
8 COG3325 ChiA Chitinase [Carboh 100.0 2.1E-59 4.6E-64 425.2 24.5 332 23-361 34-431 (441)
9 PF00704 Glyco_hydro_18: Glyco 100.0 4.7E-56 1E-60 418.0 30.7 320 27-353 1-343 (343)
10 cd02876 GH18_SI-CLP Stabilin-1 100.0 2.7E-55 5.9E-60 407.0 27.2 291 28-356 4-313 (318)
11 cd02875 GH18_chitobiase Chitob 100.0 2E-52 4.4E-57 391.3 33.1 295 25-360 34-346 (358)
12 cd02874 GH18_CFLE_spore_hydrol 100.0 5.6E-52 1.2E-56 384.5 27.6 291 28-356 3-308 (313)
13 cd06549 GH18_trifunctional GH1 100.0 7.3E-48 1.6E-52 353.2 27.1 288 29-356 2-296 (298)
14 cd06545 GH18_3CO4_chitinase Th 100.0 3.4E-47 7.3E-52 341.7 25.9 247 29-361 1-252 (253)
15 cd00598 GH18_chitinase-like Th 100.0 2.3E-36 5E-41 264.6 21.5 170 29-207 1-176 (210)
16 COG3858 Predicted glycosyl hyd 100.0 8E-36 1.7E-40 270.8 22.4 243 82-355 155-412 (423)
17 cd06546 GH18_CTS3_chitinase GH 100.0 1.9E-32 4.2E-37 244.8 23.9 196 28-260 1-217 (256)
18 cd06544 GH18_narbonin Narbonin 100.0 1.4E-32 3.1E-37 244.0 21.4 202 37-265 11-221 (253)
19 cd02871 GH18_chitinase_D-like 100.0 4.1E-30 8.9E-35 237.2 24.5 209 27-261 1-248 (312)
20 KOG2091 Predicted member of gl 100.0 1.2E-28 2.6E-33 214.2 19.4 291 27-353 79-384 (392)
21 cd02877 GH18_hevamine_XipI_cla 99.9 5.4E-24 1.2E-28 191.8 22.8 201 28-261 2-229 (280)
22 cd06542 GH18_EndoS-like Endo-b 99.9 1.4E-24 3E-29 195.6 16.2 195 27-263 1-208 (255)
23 cd06543 GH18_PF-ChiA-like PF-C 99.9 5E-21 1.1E-25 173.8 15.4 148 46-210 23-182 (294)
24 COG3469 Chitinase [Carbohydrat 99.8 7.4E-18 1.6E-22 143.0 17.2 213 24-260 23-266 (332)
25 KOG4701 Chitinase [Cell wall/m 99.6 9E-15 1.9E-19 131.0 17.0 229 1-262 1-258 (568)
26 cd06547 GH85_ENGase Endo-beta- 98.5 1.4E-06 3E-11 81.1 12.2 156 79-266 51-216 (339)
27 PF02638 DUF187: Glycosyl hydr 98.1 4.5E-05 9.7E-10 70.5 12.0 129 112-264 135-300 (311)
28 PF03644 Glyco_hydro_85: Glyco 98.0 3.4E-05 7.5E-10 71.0 8.5 155 78-264 46-209 (311)
29 PF13200 DUF4015: Putative gly 97.9 0.0015 3.2E-08 60.0 19.0 90 114-210 120-229 (316)
30 PF11340 DUF3142: Protein of u 97.5 0.0011 2.4E-08 55.2 10.4 115 112-262 22-138 (181)
31 KOG2331 Predicted glycosylhydr 94.7 0.62 1.4E-05 43.9 12.1 81 82-164 119-201 (526)
32 cd02810 DHOD_DHPD_FMN Dihydroo 91.8 1.4 3E-05 40.2 9.7 74 72-161 81-161 (289)
33 TIGR01370 cysRS possible cyste 91.5 2.1 4.6E-05 39.5 10.3 82 80-164 87-203 (315)
34 COG1306 Uncharacterized conser 90.4 0.86 1.9E-05 41.1 6.3 87 115-211 193-300 (400)
35 PF14871 GHL6: Hypothetical gl 89.8 1.3 2.8E-05 35.4 6.5 64 73-139 43-132 (132)
36 cd04734 OYE_like_3_FMN Old yel 87.2 20 0.00043 33.7 13.7 89 48-139 46-162 (343)
37 cd02930 DCR_FMN 2,4-dienoyl-Co 86.2 4.6 0.0001 38.1 8.9 89 48-139 46-158 (353)
38 COG1649 Uncharacterized protei 84.8 3.1 6.8E-05 39.8 6.9 88 113-207 181-307 (418)
39 COG1902 NemA NADH:flavin oxido 84.4 9.2 0.0002 36.2 9.9 25 73-99 82-106 (363)
40 TIGR01515 branching_enzym alph 84.4 17 0.00038 37.1 12.6 90 73-164 205-339 (613)
41 TIGR02402 trehalose_TreZ malto 83.8 5.4 0.00012 40.0 8.5 88 73-164 159-268 (542)
42 cd04733 OYE_like_2_FMN Old yel 83.4 21 0.00046 33.4 12.0 66 73-141 81-172 (338)
43 PRK12313 glycogen branching en 82.5 9.9 0.00021 39.0 10.0 91 72-164 218-352 (633)
44 PRK12568 glycogen branching en 82.1 19 0.00041 37.4 11.7 91 72-164 317-452 (730)
45 cd02801 DUS_like_FMN Dihydrour 82.0 7.7 0.00017 33.9 8.0 61 85-161 50-122 (231)
46 PF14883 GHL13: Hypothetical g 81.2 11 0.00025 34.1 8.6 125 116-262 120-264 (294)
47 TIGR02104 pulA_typeI pullulana 80.7 12 0.00027 38.1 9.9 83 74-164 229-339 (605)
48 TIGR02103 pullul_strch alpha-1 80.3 10 0.00022 40.3 9.2 83 74-164 404-516 (898)
49 cd04740 DHOD_1B_like Dihydroor 80.2 14 0.0003 33.8 9.4 71 74-161 75-153 (296)
50 PRK05402 glycogen branching en 80.0 16 0.00034 38.3 10.5 91 72-164 313-448 (726)
51 PRK14706 glycogen branching en 78.5 29 0.00062 35.7 11.7 90 73-164 216-348 (639)
52 PF13199 Glyco_hydro_66: Glyco 78.2 4.2 9E-05 40.7 5.4 54 110-163 237-301 (559)
53 PLN02495 oxidoreductase, actin 78.2 22 0.00048 34.0 10.1 57 73-144 97-153 (385)
54 PRK10550 tRNA-dihydrouridine s 77.8 8.7 0.00019 35.6 7.2 69 89-181 62-142 (312)
55 PRK07259 dihydroorotate dehydr 76.9 20 0.00043 32.9 9.3 57 89-161 91-156 (301)
56 cd02940 DHPD_FMN Dihydropyrimi 76.2 24 0.00052 32.4 9.6 71 76-161 86-167 (299)
57 PF07172 GRP: Glycine rich pro 76.1 1.6 3.4E-05 32.7 1.4 12 1-12 1-12 (95)
58 PRK10785 maltodextrin glucosid 75.6 23 0.0005 36.0 10.1 53 112-164 304-363 (598)
59 PF14885 GHL15: Hypothetical g 75.2 3.8 8.3E-05 29.5 3.2 44 97-140 32-76 (79)
60 TIGR00737 nifR3_yhdG putative 74.3 19 0.00041 33.4 8.5 42 86-143 59-100 (319)
61 PLN02960 alpha-amylase 73.7 32 0.0007 36.4 10.5 90 73-164 465-601 (897)
62 cd02932 OYE_YqiM_FMN Old yello 73.6 18 0.00039 33.8 8.3 47 48-96 46-97 (336)
63 cd02803 OYE_like_FMN_family Ol 73.6 8.2 0.00018 35.9 5.9 47 48-96 46-97 (327)
64 PF07364 DUF1485: Protein of u 73.0 37 0.0008 31.1 9.8 148 75-263 46-199 (292)
65 TIGR02102 pullulan_Gpos pullul 73.0 21 0.00046 38.9 9.4 65 74-140 555-644 (1111)
66 PF00724 Oxidored_FMN: NADH:fl 71.1 29 0.00062 32.6 9.0 49 48-98 49-102 (341)
67 cd04741 DHOD_1A_like Dihydroor 70.7 39 0.00085 30.9 9.6 77 68-161 68-156 (294)
68 cd04747 OYE_like_5_FMN Old yel 70.6 25 0.00054 33.3 8.4 47 48-96 46-98 (361)
69 COG4724 Endo-beta-N-acetylgluc 69.6 12 0.00027 35.1 5.9 81 78-160 131-218 (553)
70 PF01207 Dus: Dihydrouridine s 69.3 17 0.00036 33.6 6.9 64 83-162 47-122 (309)
71 cd02931 ER_like_FMN Enoate red 69.1 26 0.00057 33.4 8.3 47 48-96 48-103 (382)
72 TIGR00742 yjbN tRNA dihydrouri 68.0 21 0.00045 33.2 7.2 59 87-161 52-122 (318)
73 PRK08318 dihydropyrimidine deh 67.7 43 0.00092 32.4 9.6 68 78-160 88-166 (420)
74 PRK14582 pgaB outer membrane N 67.6 30 0.00065 35.6 8.7 95 149-262 513-612 (671)
75 PRK02506 dihydroorotate dehydr 67.4 38 0.00082 31.3 8.8 78 68-161 71-156 (310)
76 PRK11815 tRNA-dihydrouridine s 67.1 19 0.0004 33.8 6.7 58 88-161 63-132 (333)
77 PRK07565 dihydroorotate dehydr 67.0 39 0.00084 31.6 8.9 77 68-161 81-164 (334)
78 TIGR02456 treS_nterm trehalose 66.9 77 0.0017 31.9 11.5 52 112-164 172-230 (539)
79 TIGR02100 glgX_debranch glycog 66.0 31 0.00067 35.8 8.6 85 73-159 244-365 (688)
80 PF04914 DltD_C: DltD C-termin 65.4 51 0.0011 26.2 7.9 59 74-137 36-95 (130)
81 cd06600 GH31_MGAM-like This fa 65.2 1.2E+02 0.0025 28.2 12.6 33 111-143 130-162 (317)
82 PF02057 Glyco_hydro_59: Glyco 65.1 13 0.00028 37.8 5.5 82 78-165 116-201 (669)
83 PRK03705 glycogen debranching 64.7 22 0.00048 36.6 7.2 65 74-140 242-338 (658)
84 cd02929 TMADH_HD_FMN Trimethyl 64.6 28 0.0006 33.1 7.5 91 48-141 51-173 (370)
85 PRK05286 dihydroorotate dehydr 64.3 32 0.0007 32.3 7.8 77 76-162 124-206 (344)
86 PRK13523 NADPH dehydrogenase N 64.0 1.1E+02 0.0024 28.6 11.3 90 48-140 50-164 (337)
87 cd04735 OYE_like_4_FMN Old yel 63.9 20 0.00044 33.8 6.4 88 49-139 48-165 (353)
88 cd06589 GH31 The enzymes of gl 63.0 30 0.00065 31.1 7.1 53 75-144 67-119 (265)
89 PLN02877 alpha-amylase/limit d 62.8 41 0.00089 36.1 8.8 66 75-142 467-563 (970)
90 PRK14581 hmsF outer membrane N 62.5 1.6E+02 0.0035 30.4 12.8 195 47-261 346-611 (672)
91 cd06592 GH31_glucosidase_KIAA1 62.1 48 0.001 30.5 8.4 65 76-142 72-166 (303)
92 cd06591 GH31_xylosidase_XylS X 60.6 93 0.002 28.8 10.1 64 76-142 68-160 (319)
93 PF14587 Glyco_hydr_30_2: O-Gl 60.1 23 0.0005 33.6 5.9 87 76-165 106-217 (384)
94 PRK14705 glycogen branching en 58.4 99 0.0021 34.4 11.0 91 72-164 813-948 (1224)
95 PF02065 Melibiase: Melibiase; 58.3 28 0.00061 33.4 6.3 69 72-142 102-194 (394)
96 COG1891 Uncharacterized protei 56.7 93 0.002 26.1 8.1 160 137-353 24-192 (235)
97 PLN02411 12-oxophytodienoate r 55.2 32 0.0007 33.0 6.2 46 50-97 58-108 (391)
98 cd02933 OYE_like_FMN Old yello 52.8 64 0.0014 30.2 7.7 46 51-98 49-99 (338)
99 PLN02711 Probable galactinol-- 52.4 63 0.0014 33.5 7.8 91 74-164 305-434 (777)
100 COG0296 GlgB 1,4-alpha-glucan 52.3 59 0.0013 33.2 7.6 66 72-139 212-304 (628)
101 PF00834 Ribul_P_3_epim: Ribul 52.1 61 0.0013 27.9 6.9 67 124-210 73-139 (201)
102 KOG1552 Predicted alpha/beta h 52.1 27 0.00058 31.2 4.6 50 201-264 88-138 (258)
103 cd04738 DHOD_2_like Dihydrooro 51.7 68 0.0015 29.9 7.6 75 78-162 116-197 (327)
104 TIGR01037 pyrD_sub1_fam dihydr 50.6 1.3E+02 0.0027 27.5 9.2 88 89-205 90-189 (300)
105 PF01120 Alpha_L_fucos: Alpha- 49.9 1.2E+02 0.0027 28.4 9.1 87 72-160 136-235 (346)
106 cd04739 DHOD_like Dihydroorota 49.2 1.2E+02 0.0027 28.1 9.0 55 71-142 82-136 (325)
107 PF05691 Raffinose_syn: Raffin 49.2 1.1E+02 0.0024 31.8 9.1 91 73-163 287-416 (747)
108 PF07582 AP_endonuc_2_N: AP en 49.1 27 0.00058 23.2 3.2 41 121-161 3-44 (55)
109 PLN03244 alpha-amylase; Provis 48.8 1.8E+02 0.0039 30.7 10.4 65 72-138 439-531 (872)
110 cd06602 GH31_MGAM_SI_GAA This 48.1 86 0.0019 29.4 7.7 34 110-143 134-167 (339)
111 PF08869 XisI: XisI protein; 47.9 9.9 0.00021 29.3 1.2 19 240-258 79-97 (111)
112 PRK01060 endonuclease IV; Prov 47.5 41 0.00089 30.3 5.4 46 120-165 14-60 (281)
113 PLN02447 1,4-alpha-glucan-bran 47.4 49 0.0011 34.6 6.4 65 72-138 298-390 (758)
114 smart00812 Alpha_L_fucos Alpha 46.9 84 0.0018 30.1 7.5 86 72-159 126-221 (384)
115 cd06595 GH31_xylosidase_XylS-l 45.9 2.4E+02 0.0051 25.7 11.8 66 76-143 76-161 (292)
116 PRK08005 epimerase; Validated 45.6 1.1E+02 0.0023 26.6 7.3 68 123-210 73-140 (210)
117 PF10354 DUF2431: Domain of un 45.4 71 0.0015 26.5 6.0 101 78-210 44-154 (166)
118 PRK03995 hypothetical protein; 45.0 85 0.0018 28.4 6.8 69 88-157 179-260 (267)
119 COG0042 tRNA-dihydrouridine sy 43.8 66 0.0014 30.0 6.2 43 120-162 81-135 (323)
120 TIGR00736 nifR3_rel_arch TIM-b 43.0 1.2E+02 0.0026 26.7 7.4 88 89-204 67-167 (231)
121 PRK08091 ribulose-phosphate 3- 42.9 1.4E+02 0.0031 26.2 7.8 69 124-210 84-152 (228)
122 PF07476 MAAL_C: Methylasparta 42.8 1.8E+02 0.0038 25.6 8.0 118 74-210 47-173 (248)
123 TIGR01036 pyrD_sub2 dihydrooro 42.7 2E+02 0.0043 27.0 9.2 79 75-163 120-204 (335)
124 PRK08255 salicylyl-CoA 5-hydro 42.7 1.1E+02 0.0024 32.3 8.3 25 115-140 549-573 (765)
125 TIGR03234 OH-pyruv-isom hydrox 42.5 34 0.00074 30.3 4.0 37 120-165 16-52 (254)
126 cd06599 GH31_glycosidase_Aec37 42.3 1.5E+02 0.0032 27.5 8.3 64 76-142 75-169 (317)
127 PF04468 PSP1: PSP1 C-terminal 40.7 1E+02 0.0022 22.6 5.6 60 104-163 12-81 (88)
128 KOG3111 D-ribulose-5-phosphate 40.4 1.4E+02 0.003 25.6 6.8 67 124-210 80-146 (224)
129 PRK09722 allulose-6-phosphate 40.4 1.3E+02 0.0029 26.4 7.2 68 124-210 75-142 (229)
130 cd02911 arch_FMN Archeal FMN-b 40.0 2E+02 0.0044 25.3 8.4 54 89-159 72-137 (233)
131 cd00019 AP2Ec AP endonuclease 40.0 65 0.0014 29.0 5.5 44 121-164 13-57 (279)
132 COG3410 Uncharacterized conser 39.7 62 0.0014 26.8 4.6 33 110-142 144-176 (191)
133 COG3867 Arabinogalactan endo-1 39.7 3.1E+02 0.0067 25.3 11.3 57 85-144 113-179 (403)
134 COG1908 FrhD Coenzyme F420-red 39.0 54 0.0012 25.6 3.9 46 120-165 80-125 (132)
135 TIGR00542 hxl6Piso_put hexulos 38.9 52 0.0011 29.6 4.7 45 121-165 19-65 (279)
136 PF08885 GSCFA: GSCFA family; 37.5 96 0.0021 27.8 5.9 26 74-99 152-177 (251)
137 PRK10415 tRNA-dihydrouridine s 37.5 1.2E+02 0.0025 28.3 6.8 38 124-161 83-132 (321)
138 PRK09505 malS alpha-amylase; R 37.3 78 0.0017 32.8 6.0 29 112-140 435-463 (683)
139 PRK13209 L-xylulose 5-phosphat 36.9 62 0.0013 29.1 4.9 45 121-165 24-70 (283)
140 PF05219 DREV: DREV methyltran 36.0 81 0.0018 28.3 5.1 103 73-183 75-194 (265)
141 COG0036 Rpe Pentose-5-phosphat 35.7 2.4E+02 0.0053 24.6 7.9 68 123-210 76-143 (220)
142 PF14488 DUF4434: Domain of un 35.2 2.6E+02 0.0056 23.1 12.8 109 47-164 32-151 (166)
143 PRK08745 ribulose-phosphate 3- 35.2 2E+02 0.0043 25.2 7.5 67 124-210 78-144 (223)
144 PRK15396 murein lipoprotein; P 34.9 35 0.00075 24.5 2.2 24 1-24 1-24 (78)
145 COG1523 PulA Type II secretory 34.7 1.2E+02 0.0027 31.4 6.9 65 74-140 265-361 (697)
146 PRK12677 xylose isomerase; Pro 33.3 1.2E+02 0.0026 29.1 6.2 46 120-165 33-80 (384)
147 PF10566 Glyco_hydro_97: Glyco 33.1 2.1E+02 0.0047 25.9 7.5 73 73-159 72-144 (273)
148 COG2342 Predicted extracellula 33.0 1.3E+02 0.0028 27.3 5.9 46 119-164 127-183 (300)
149 TIGR01689 EcbF-BcbF capsule bi 32.3 58 0.0013 25.7 3.3 55 237-299 66-121 (126)
150 cd06598 GH31_transferase_CtsZ 32.1 2.9E+02 0.0062 25.6 8.5 31 111-142 135-165 (317)
151 COG5309 Exo-beta-1,3-glucanase 31.6 1.8E+02 0.0039 26.3 6.5 58 80-137 221-279 (305)
152 PF00128 Alpha-amylase: Alpha 31.4 99 0.0022 27.7 5.4 47 111-164 142-188 (316)
153 PF14606 Lipase_GDSL_3: GDSL-l 31.4 1.8E+02 0.004 24.5 6.3 63 73-136 77-140 (178)
154 COG1768 Predicted phosphohydro 31.2 3.3E+02 0.0072 23.1 8.5 25 135-159 124-148 (230)
155 PRK09856 fructoselysine 3-epim 30.8 95 0.0021 27.7 5.0 46 120-165 15-60 (275)
156 PRK15240 resistance to complem 30.8 57 0.0012 27.6 3.3 34 1-34 1-35 (185)
157 PRK09989 hypothetical protein; 30.5 96 0.0021 27.5 5.0 36 121-165 18-53 (258)
158 PF05984 Cytomega_UL20A: Cytom 30.5 52 0.0011 23.7 2.4 19 1-19 1-19 (100)
159 PF01180 DHO_dh: Dihydroorotat 30.0 4.2E+02 0.009 24.1 9.2 73 89-181 96-171 (295)
160 KOG3035 Isoamyl acetate-hydrol 29.9 2.6E+02 0.0056 24.5 6.9 64 73-137 99-171 (245)
161 PRK09441 cytoplasmic alpha-amy 29.7 1.1E+02 0.0024 30.2 5.6 46 112-163 207-252 (479)
162 PRK14866 hypothetical protein; 29.6 1.6E+02 0.0035 28.8 6.4 69 88-157 183-263 (451)
163 PF01261 AP_endonuc_2: Xylose 29.6 64 0.0014 27.1 3.5 39 125-165 2-40 (213)
164 PRK13210 putative L-xylulose 5 29.3 1E+02 0.0023 27.5 5.1 45 121-165 19-65 (284)
165 TIGR02631 xylA_Arthro xylose i 29.3 1.4E+02 0.0031 28.5 6.1 44 122-165 36-81 (382)
166 PRK08508 biotin synthase; Prov 28.8 2.4E+02 0.0052 25.5 7.2 68 73-160 74-146 (279)
167 cd06604 GH31_glucosidase_II_Ma 28.3 4.4E+02 0.0096 24.5 9.2 64 76-142 66-160 (339)
168 cd06593 GH31_xylosidase_YicI Y 28.2 3.2E+02 0.007 25.0 8.1 64 76-142 68-160 (308)
169 cd07321 Extradiol_Dioxygenase_ 28.2 83 0.0018 22.4 3.3 30 104-133 7-36 (77)
170 PRK13840 sucrose phosphorylase 28.0 2E+02 0.0043 28.6 6.9 54 110-164 166-226 (495)
171 PF06745 KaiC: KaiC; InterPro 27.7 3.2E+02 0.0069 23.5 7.7 88 114-210 98-188 (226)
172 COG0050 TufB GTPases - transla 27.6 1.1E+02 0.0025 28.1 4.6 56 108-163 139-198 (394)
173 PRK09997 hydroxypyruvate isome 27.2 1.2E+02 0.0025 26.9 4.9 42 120-177 17-58 (258)
174 PF08194 DIM: DIM protein; In 27.0 72 0.0016 19.1 2.2 6 1-6 1-6 (36)
175 TIGR01839 PHA_synth_II poly(R) 27.0 1.7E+02 0.0036 29.6 6.2 49 121-169 237-286 (560)
176 PRK14510 putative bifunctional 26.8 1.9E+02 0.0041 32.4 7.1 65 73-140 246-344 (1221)
177 PRK08883 ribulose-phosphate 3- 26.7 3E+02 0.0066 23.9 7.2 66 125-210 75-140 (220)
178 COG0429 Predicted hydrolase of 26.5 2E+02 0.0044 26.9 6.2 45 118-162 91-146 (345)
179 PRK14582 pgaB outer membrane N 26.4 7.3E+02 0.016 25.8 10.7 34 88-137 105-138 (671)
180 COG3317 NlpB Uncharacterized l 26.1 1.6E+02 0.0035 27.4 5.5 19 118-136 110-128 (342)
181 cd01841 NnaC_like NnaC (CMP-Ne 25.9 3.5E+02 0.0076 21.8 7.3 63 73-138 74-137 (174)
182 PF14307 Glyco_tran_WbsX: Glyc 25.4 93 0.002 29.2 4.0 28 325-352 55-82 (345)
183 cd00288 Pyruvate_Kinase Pyruva 25.4 2.2E+02 0.0047 28.2 6.7 68 89-182 3-70 (480)
184 PRK09408 ompX outer membrane p 24.7 89 0.0019 26.1 3.3 34 1-34 1-34 (171)
185 PRK06247 pyruvate kinase; Prov 24.3 2.3E+02 0.005 28.0 6.5 69 88-182 5-73 (476)
186 cd06594 GH31_glucosidase_YihQ 24.3 3.9E+02 0.0085 24.7 7.9 65 76-142 73-167 (317)
187 COG3623 SgaU Putative L-xylulo 24.1 4.3E+02 0.0093 23.5 7.3 108 58-180 38-154 (287)
188 PRK06354 pyruvate kinase; Prov 24.1 1.9E+02 0.0041 29.5 6.1 73 84-182 4-76 (590)
189 PRK01222 N-(5'-phosphoribosyl) 24.1 1.7E+02 0.0036 25.3 5.1 40 121-160 166-208 (210)
190 TIGR01651 CobT cobaltochelatas 23.6 5.4E+02 0.012 26.2 8.9 105 24-130 428-555 (600)
191 PRK15108 biotin synthase; Prov 23.5 4E+02 0.0086 25.0 7.9 41 122-162 137-182 (345)
192 COG3365 Uncharacterized protei 23.4 1.4E+02 0.003 22.8 3.7 42 112-154 43-84 (118)
193 cd01827 sialate_O-acetylestera 23.3 3.7E+02 0.008 22.0 7.1 62 74-137 93-154 (188)
194 PLN02433 uroporphyrinogen deca 23.2 1.9E+02 0.0042 27.0 5.8 18 123-140 245-262 (345)
195 TIGR01769 GGGP geranylgeranylg 23.2 2.5E+02 0.0055 24.2 5.9 64 120-207 13-78 (205)
196 PRK09810 entericidin A; Provis 23.2 60 0.0013 20.1 1.5 14 1-14 1-14 (41)
197 PRK08187 pyruvate kinase; Vali 23.2 2.7E+02 0.0059 27.7 6.8 70 88-182 133-202 (493)
198 TIGR02311 HpaI 2,4-dihydroxyhe 23.1 3.3E+02 0.0071 24.2 6.9 31 123-154 25-55 (249)
199 cd01828 sialate_O-acetylestera 23.0 3.1E+02 0.0068 22.0 6.5 21 74-94 72-92 (169)
200 PRK06756 flavodoxin; Provision 23.0 3.9E+02 0.0084 21.2 9.5 96 46-160 47-146 (148)
201 COG1540 Uncharacterized protei 22.6 2.2E+02 0.0048 25.1 5.4 50 116-165 190-245 (252)
202 TIGR03239 GarL 2-dehydro-3-deo 22.4 3.2E+02 0.0069 24.3 6.7 33 123-156 25-57 (249)
203 TIGR01064 pyruv_kin pyruvate k 22.3 2.6E+02 0.0057 27.6 6.6 68 89-182 2-69 (473)
204 cd01838 Isoamyl_acetate_hydrol 22.2 3.5E+02 0.0075 22.2 6.8 64 73-137 91-162 (199)
205 cd08578 GDPD_NUC-2_fungi Putat 22.2 1.8E+02 0.0038 26.9 5.0 29 112-140 223-251 (300)
206 PLN02428 lipoic acid synthase 22.1 6.7E+02 0.015 23.7 9.2 70 48-141 146-215 (349)
207 KOG2872 Uroporphyrinogen decar 21.9 3.4E+02 0.0073 24.9 6.4 48 124-178 265-334 (359)
208 KOG2335 tRNA-dihydrouridine sy 21.6 1.5E+02 0.0032 27.9 4.4 57 89-162 73-141 (358)
209 cd01833 XynB_like SGNH_hydrola 21.4 3.6E+02 0.0079 21.3 6.5 23 73-95 63-85 (157)
210 PRK10128 2-keto-3-deoxy-L-rham 21.4 3.3E+02 0.0072 24.6 6.6 34 123-157 31-64 (267)
211 PF06576 DUF1133: Protein of u 21.3 1E+02 0.0022 25.7 2.9 32 103-134 43-74 (176)
212 PRK00115 hemE uroporphyrinogen 21.3 2E+02 0.0044 26.8 5.5 18 123-140 252-269 (346)
213 PRK15014 6-phospho-beta-glucos 21.2 3.5E+02 0.0076 26.8 7.2 77 52-131 88-167 (477)
214 PRK14057 epimerase; Provisiona 21.2 5.6E+02 0.012 23.0 7.8 73 125-210 92-166 (254)
215 PF02402 Lysis_col: Lysis prot 21.1 71 0.0015 20.0 1.5 17 1-17 1-17 (46)
216 TIGR00259 thylakoid_BtpA membr 21.0 4.5E+02 0.0097 23.6 7.2 38 122-161 213-256 (257)
217 PF00150 Cellulase: Cellulase 21.0 5.7E+02 0.012 22.4 9.0 89 74-165 62-163 (281)
218 PF10731 Anophelin: Thrombin i 20.8 1.1E+02 0.0024 20.6 2.4 17 1-17 1-17 (65)
219 PF08139 LPAM_1: Prokaryotic m 20.8 33 0.00071 18.7 -0.0 13 5-17 9-21 (25)
220 smart00518 AP2Ec AP endonuclea 20.5 2.2E+02 0.0048 25.3 5.4 44 122-165 14-58 (273)
221 cd04502 SGNH_hydrolase_like_7 20.4 3.6E+02 0.0078 21.7 6.3 36 126-161 45-87 (171)
222 COG1941 FrhG Coenzyme F420-red 20.4 4.8E+02 0.01 23.1 7.0 76 77-157 67-150 (247)
223 PLN02684 Probable galactinol-- 20.3 2.4E+02 0.0051 29.4 5.8 54 111-164 358-414 (750)
No 1
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=100.00 E-value=3.6e-66 Score=474.15 Aligned_cols=292 Identities=55% Similarity=0.984 Sum_probs=262.2
Q ss_pred CcEEEEEeCCCC-CCCCCCCCCCCCcEEEEEEEEeeCCCcEEEeCCcchHHHHHHHHHHHhhCCCceEEEEEcCCCCCch
Q 037639 26 NAVKAAYWFSGS-NFPVADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLSIGGGNASKE 104 (361)
Q Consensus 26 ~~~~~~y~~~~~-~~~~~~~~~~~~thii~~~~~v~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~ 104 (361)
+-+++|||+++. .+.++++|.++||||+|+|+.++++++.+...+.....+.++.+.+|+++|++|+++|||||+.+++
T Consensus 2 ~~~~~~Y~~~w~~~~~~~~i~~~~~THi~yaf~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~lkvlisiGG~~~~s~ 81 (299)
T cd02879 2 TIVKGGYWPAWSEEFPPSNIDSSLFTHLFYAFADLDPSTYEVVISPSDESEFSTFTETVKRKNPSVKTLLSIGGGGSDSS 81 (299)
T ss_pred CeEEEEEECCCCCCCChhHCCcccCCEEEEEEEEecCCCCEEeeccccHHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCc
Confidence 358899999755 8999999999999999999999988878887776666788888889999999999999999987678
Q ss_pred hHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc-cchhhHHHHHHHHHHHHHHHHHhcCCCceEEEEEeeccc
Q 037639 105 SFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN-AQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSA 183 (361)
Q Consensus 105 ~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~-~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a~~~~~ 183 (361)
.|+.++++++.|++|++++++++++|+|||||||||+|.. +|+++|+.||++||++|+++++.+++++++||+++++.+
T Consensus 82 ~fs~~~~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll~elr~~l~~~~~~~~~~~~~ls~av~~~~ 161 (299)
T cd02879 82 AFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLLEEWRAAVKDEARSSGRPPLLLTAAVYFSP 161 (299)
T ss_pred hhhHHhCCHHHHHHHHHHHHHHHHHhCCCceeecccCCCChhHHHHHHHHHHHHHHHHHHHhhccCCCcEEEEeecccch
Confidence 9999999999999999999999999999999999999975 899999999999999999877766666799999998765
Q ss_pred cc----ccCCCChhhHhccCCeEEeeeeccCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCceEEecc
Q 037639 184 NY----FGAINPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQSGLSPKKIVLGFP 259 (361)
Q Consensus 184 ~~----~~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~~~~spl~~~~~~~~~~~~~~~~~~~~g~~~~KivlGlp 259 (361)
.. ....|++++|.++||+|+||+||+| |+ |. ...+++++||+.+. +..+++.+|++|+..|+|++||+||+|
T Consensus 162 ~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~-g~-~~-~~~~~~~a~l~~~~-~~~~~~~~v~~~~~~g~p~~KlvlGvp 237 (299)
T cd02879 162 ILFLSDDSVSYPIEAINKNLDWVNVMAYDYY-GS-WE-SNTTGPAAALYDPN-SNVSTDYGIKSWIKAGVPAKKLVLGLP 237 (299)
T ss_pred hhccccccccCCHHHHHhhCCEEEEEeeccc-CC-CC-CCCCCCCCcCCCCC-CCCCHHHHHHHHHHcCCCHHHEEEEec
Confidence 43 3456899999999999999999999 98 72 23578899999765 567899999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCccCCCCcccchHHHHHHhhcCCcEEEEecceeeEEEEeCCEEEEECCHHHHHHHHHHHHH
Q 037639 260 FFGHSLQLANANNHGFWAPTSGVVNGGTMSYKEIRQFIMSTNATKVFNATVVSDYCYSGTTWIGYDDTQSVNTKVKYAKD 339 (361)
Q Consensus 260 ~yG~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~d~~~~~~y~~~~~~~i~y~d~~S~~~K~~~~~~ 339 (361)
+|||.|++ ||+.++++|.|++++||+|||++|++.|++|+++
T Consensus 238 ~YGr~~~~--------------------------------------~D~~~~~~y~~~~~~wi~ydd~~Si~~K~~~a~~ 279 (299)
T cd02879 238 LYGRAWTL--------------------------------------YDTTTVSSYVYAGTTWIGYDDVQSIAVKVKYAKQ 279 (299)
T ss_pred cccccccc--------------------------------------cCCCcceEEEEECCEEEEeCCHHHHHHHHHHHHh
Confidence 99999962 7888889999999999999999999999999999
Q ss_pred cCCceEEEeeecCCCCcCcc
Q 037639 340 NGLLGYFAWQISQDDNWILS 359 (361)
Q Consensus 340 ~gl~Gv~iW~l~~Dd~~~l~ 359 (361)
+||||+|+|++++||...|+
T Consensus 280 ~~lgGv~~W~l~~Dd~~~~~ 299 (299)
T cd02879 280 KGLLGYFAWAVGYDDNNWLS 299 (299)
T ss_pred CCCCeEEEEEeecCCccccC
Confidence 99999999999999987663
No 2
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=100.00 E-value=4.9e-66 Score=488.12 Aligned_cols=315 Identities=39% Similarity=0.686 Sum_probs=277.4
Q ss_pred EEEEeCCC-------CCCCCCCCCCCCCcEEEEEEEEeeCCCcEEEeCCc----chHHHHHHHHHHHhhCCCceEEEEEc
Q 037639 29 KAAYWFSG-------SNFPVADIDSILFTHLFCAFADLDSQNFQVTVSSE----NQAIFSSFTRTVQQKNPAVKALLSIG 97 (361)
Q Consensus 29 ~~~y~~~~-------~~~~~~~~~~~~~thii~~~~~v~~~~~~~~~~~~----~~~~~~~~~~~lk~~~~~~kvllsig 97 (361)
++|||+.+ ..+.++++|.++||||+|+|+.++++| ++...+. ....+.++. .+|+++|++||++|||
T Consensus 1 v~~y~~~w~~~~~~~~~~~~~~i~~~~~Thv~y~f~~i~~~g-~~~~~~~~~d~~~~~~~~~~-~lk~~~p~lkvlisiG 78 (362)
T cd02872 1 VVCYFTNWAQYRPGNGKFVPENIDPFLCTHIIYAFAGLNPDG-NIIILDEWNDIDLGLYERFN-ALKEKNPNLKTLLAIG 78 (362)
T ss_pred CEEEECcchhcCCCCCCcChhHCCcccCCEEEEeeEEECCCC-CEEecCchhhhhhhHHHHHH-HHHhhCCCceEEEEEc
Confidence 57899842 357899999999999999999999876 4444332 234455555 7999999999999999
Q ss_pred CCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc-----cchhhHHHHHHHHHHHHHHHHHhcCCCc
Q 037639 98 GGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN-----AQMSDFGTLLTEWRSAVAAEARSSGKPA 172 (361)
Q Consensus 98 g~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~-----~~~~~~~~~l~~l~~~l~~~~~~~~~~~ 172 (361)
||+.+++.|+.++++++.|++|++++++++++|+|||||||||+|.. +++++|+.||++||++|++.+ ++
T Consensus 79 G~~~~~~~f~~~~~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l~~~~-----~~ 153 (362)
T cd02872 79 GWNFGSAKFSAMAASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAFEPEA-----PR 153 (362)
T ss_pred CCCCCcchhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHHHhhC-----cC
Confidence 99865678999999999999999999999999999999999999974 789999999999999999862 13
Q ss_pred eEEEEEeecccccccCCCChhhHhccCCeEEeeeeccCCCCCCCCCCCCCCCCCCCCCCC-----CCCcHHHHHHHHHHc
Q 037639 173 LLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALFSPDR-----SQVSGDSGIRAWIQS 247 (361)
Q Consensus 173 ~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~~~~spl~~~~~-----~~~~~~~~~~~~~~~ 247 (361)
++||+++|+.+......|+++.|.+++|+|+||+||+| ++ | +..+++++||+.... ...+++.++++|++.
T Consensus 154 ~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vmtYD~~-~~-~--~~~~g~~spl~~~~~~~~~~~~~~v~~~v~~~~~~ 229 (362)
T cd02872 154 LLLTAAVSAGKETIDAAYDIPEISKYLDFINVMTYDFH-GS-W--EGVTGHNSPLYAGSADTGDQKYLNVDYAIKYWLSK 229 (362)
T ss_pred eEEEEEecCChHHHhhcCCHHHHhhhcceEEEecccCC-CC-C--CCCCCCCCCCCCCCCCccccccccHHHHHHHHHHc
Confidence 89999999866554556899999999999999999999 98 8 778999999986432 346899999999999
Q ss_pred CCCCCceEEecccccccccccCCCCCCCCCCCccCC-------CCcccchHHHHHHhhcCCcEEEEecceeeEEEEeCCE
Q 037639 248 GLSPKKIVLGFPFFGHSLQLANANNHGFWAPTSGVV-------NGGTMSYKEIRQFIMSTNATKVFNATVVSDYCYSGTT 320 (361)
Q Consensus 248 g~~~~KivlGlp~yG~~~~~~~~~~~~~~~~~~~~~-------~~g~~~y~~i~~~~~~~~~~~~~d~~~~~~y~~~~~~ 320 (361)
|+|++||+||||+||+.|++.++.++++++|+.+++ ++|.++|.|||+.+ +.+++..||+.++++|.|++++
T Consensus 230 gvp~~KlvlGlp~YG~~~~~~~~~~~~~g~~~~g~~~~g~~~~~~g~~~y~ei~~~~-~~~~~~~~D~~~~~~y~~~~~~ 308 (362)
T cd02872 230 GAPPEKLVLGIPTYGRSFTLASPSNTGVGAPASGPGTAGPYTREAGFLAYYEICEFL-KSGWTVVWDDEQKVPYAYKGNQ 308 (362)
T ss_pred CCCHHHeEeccccccceeeecCCccCCCCCccCCCCCCCCCcCCCccchHHHHHHhh-cCCcEEEEeCCcceeEEEECCE
Confidence 999999999999999999999888888898887654 45789999999988 7899999999999999999999
Q ss_pred EEEECCHHHHHHHHHHHHHcCCceEEEeeecCCCC
Q 037639 321 WIGYDDTQSVNTKVKYAKDNGLLGYFAWQISQDDN 355 (361)
Q Consensus 321 ~i~y~d~~S~~~K~~~~~~~gl~Gv~iW~l~~Dd~ 355 (361)
||+|||++|++.|+++++++||||+++|++++||.
T Consensus 309 ~v~ydd~~Si~~K~~~~~~~~lgGv~iW~l~~DD~ 343 (362)
T cd02872 309 WVGYDDEESIALKVQYLKSKGLGGAMVWSIDLDDF 343 (362)
T ss_pred EEEeCCHHHHHHHHHHHHhCCCceEEEEeeecCcC
Confidence 99999999999999999999999999999999983
No 3
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=100.00 E-value=4.6e-63 Score=471.48 Aligned_cols=317 Identities=26% Similarity=0.496 Sum_probs=258.6
Q ss_pred EEEEEeCC-------CCCCCCCCCCCCC--CcEEEEEEEEeeCCCcEEEeCCcc----hHHHHHHHHHHHhhCCCceEEE
Q 037639 28 VKAAYWFS-------GSNFPVADIDSIL--FTHLFCAFADLDSQNFQVTVSSEN----QAIFSSFTRTVQQKNPAVKALL 94 (361)
Q Consensus 28 ~~~~y~~~-------~~~~~~~~~~~~~--~thii~~~~~v~~~~~~~~~~~~~----~~~~~~~~~~lk~~~~~~kvll 94 (361)
.++|||.. ...+.+++||... ||||+|+|+.++++++.+...+.. ...+.++. .+|++||++|+|+
T Consensus 1 ~vvcyy~~~a~~r~~~~~~~~~~i~~~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~lk~~~p~lKvll 79 (413)
T cd02873 1 KLVCYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDADTYKIKSLNEDLDLDKSHYRAIT-SLKRKYPHLKVLL 79 (413)
T ss_pred CEEEEecchhhcCCCCCeeCHHHcCCccccCCeEEEEEEEEeCCCCEEEecCcccchhhhHHHHHH-HHHhhCCCCeEEE
Confidence 36899984 2356789999865 999999999999887777664432 24456655 6999999999999
Q ss_pred EEcCCCCC-----chhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc-------------------------
Q 037639 95 SIGGGNAS-----KESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN------------------------- 144 (361)
Q Consensus 95 sigg~~~~-----~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~------------------------- 144 (361)
|||||+.. +..|+.++++++.|++|+++++++|++|+|||||||||+|..
T Consensus 80 SiGGw~~~~~~~~s~~fs~~~~~~~~R~~Fi~siv~~l~~~~fDGidiDWEyP~~~~~~~~g~~~~~~~~~~~~~~g~~~ 159 (413)
T cd02873 80 SVGGDRDTDEEGENEKYLLLLESSESRNAFINSAHSLLKTYGFDGLDLAWQFPKNKPKKVRGTFGSAWHSFKKLFTGDSV 159 (413)
T ss_pred eecCCCCCCCcccchhhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeEeeeeCCCCcccccccccchhhhhhhcccccccc
Confidence 99999752 357999999999999999999999999999999999999852
Q ss_pred ------cchhhHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecccccccCCCChhhHhccCCeEEeeeeccCCCCCCCCC
Q 037639 145 ------AQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFFYNDDRTGS 218 (361)
Q Consensus 145 ------~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~ 218 (361)
+++++|+.||++||++|++.+ ++|++++++.... ...||+++|.++||||+||+||+| ++ |..+
T Consensus 160 ~~~~~~~d~~nf~~Ll~elr~~l~~~~-------~~ls~av~~~~~~-~~~~d~~~l~~~vD~inlMtYD~~-g~-~~~~ 229 (413)
T cd02873 160 VDEKAAEHKEQFTALVRELKNALRPDG-------LLLTLTVLPHVNS-TWYFDVPAIANNVDFVNLATFDFL-TP-ERNP 229 (413)
T ss_pred cCCCChhHHHHHHHHHHHHHHHhcccC-------cEEEEEecCCchh-ccccCHHHHhhcCCEEEEEEeccc-CC-CCCC
Confidence 578999999999999998763 7888887643221 234899999999999999999999 88 5323
Q ss_pred CCCCCCCCCCCCC--CCCCcHHHHHHHHHHcCCCCCceEEecccccccccccCCC-CCCC--CCCCccCC-------CCc
Q 037639 219 RITGPPAALFSPD--RSQVSGDSGIRAWIQSGLSPKKIVLGFPFFGHSLQLANAN-NHGF--WAPTSGVV-------NGG 286 (361)
Q Consensus 219 ~~~~~~spl~~~~--~~~~~~~~~~~~~~~~g~~~~KivlGlp~yG~~~~~~~~~-~~~~--~~~~~~~~-------~~g 286 (361)
..+++++||+... ....+++.++++|++.|+|++||+||||+|||.|++..+. ..+. .+++.|++ ++|
T Consensus 230 ~~~~~~apL~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~w~l~~~~~~~g~~~~~~~~g~~~~G~~~~~~g 309 (413)
T cd02873 230 EEADYTAPIYELYERNPHHNVDYQVKYWLNQGTPASKLNLGIATYGRAWKLTKDSGITGVPPVLETDGPGPAGPQTKTPG 309 (413)
T ss_pred CccCcCCccCCCccccccccHHHHHHHHHHcCCCHHHeEEEEecceeeeEccCCCCCcCCCCCccCCCCCCCCCCcCCCc
Confidence 4689999998653 1356899999999999999999999999999999987653 2221 13343332 567
Q ss_pred ccchHHHHHHhhcC--------CcEEEEeccee-eEEEEeC-------CEEEEECCHHHHHHHHHHHHHcCCceEEEeee
Q 037639 287 TMSYKEIRQFIMST--------NATKVFNATVV-SDYCYSG-------TTWIGYDDTQSVNTKVKYAKDNGLLGYFAWQI 350 (361)
Q Consensus 287 ~~~y~~i~~~~~~~--------~~~~~~d~~~~-~~y~~~~-------~~~i~y~d~~S~~~K~~~~~~~gl~Gv~iW~l 350 (361)
.++|.|||+.+... .++..||+..+ ++|.|.. ++||+|||++|++.|++|++++||||+|+|++
T Consensus 310 ~l~y~ei~~~~~~~~~~~g~~~~~~~~~d~~~~~~~y~y~~~d~~~~~~~wvsydd~~Si~~K~~y~~~~gLgGv~~W~l 389 (413)
T cd02873 310 LLSWPEICSKLPNPANLKGADAPLRKVGDPTKRFGSYAYRPADENGEHGIWVSYEDPDTAANKAGYAKAKGLGGVALFDL 389 (413)
T ss_pred cccHHHHHHhhccCccccccccceeEeecccccccceEEeccccCCCCCeEEEeCCHHHHHHHHHHHHhCCCceEEEEee
Confidence 89999999977542 35567888775 5888842 46999999999999999999999999999999
Q ss_pred cCCCC
Q 037639 351 SQDDN 355 (361)
Q Consensus 351 ~~Dd~ 355 (361)
++||.
T Consensus 390 ~~DD~ 394 (413)
T cd02873 390 SLDDF 394 (413)
T ss_pred ecCcC
Confidence 99984
No 4
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=100.00 E-value=3.7e-62 Score=457.26 Aligned_cols=314 Identities=36% Similarity=0.663 Sum_probs=273.8
Q ss_pred EEEEEeCCCC----CCCCCCCCCCCCcEEEEEEEEeeCCCcEEEeCCcchH--HHHHHHHHHHhhCCCceEEEEEcCCCC
Q 037639 28 VKAAYWFSGS----NFPVADIDSILFTHLFCAFADLDSQNFQVTVSSENQA--IFSSFTRTVQQKNPAVKALLSIGGGNA 101 (361)
Q Consensus 28 ~~~~y~~~~~----~~~~~~~~~~~~thii~~~~~v~~~~~~~~~~~~~~~--~~~~~~~~lk~~~~~~kvllsigg~~~ 101 (361)
+++|||+++. .+.+++++.++||||+|+|+.++++| ++.+.++... .+.++. .+|+++|++|+|++|||+..
T Consensus 1 ~~~~Y~~~w~~~~~~~~~~~~~~~~~thv~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~-~l~~~~~~~kvl~svgg~~~ 78 (334)
T smart00636 1 RVVGYFTNWGVYGRNFPVDDIPASKLTHIIYAFANIDPDG-TVTIGDEWADIGNFGQLK-ALKKKNPGLKVLLSIGGWTE 78 (334)
T ss_pred CEEEEECchhccCCCCChhHCCcccCcEEEEeeeeeCCCC-CEeeCCcchhhhhHHHHH-HHHHhCCCCEEEEEEeCCCC
Confidence 4789998644 37899999999999999999999865 7777654332 455554 68999999999999999876
Q ss_pred CchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc--cchhhHHHHHHHHHHHHHHHHHhcCCCceEEEEEe
Q 037639 102 SKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN--AQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAV 179 (361)
Q Consensus 102 ~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~--~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a~ 179 (361)
++.|+.++++++.|++|++++++++++|+|||||||||+|.. .++.+|+.|+++||++|++..+ + +++++||+++
T Consensus 79 -s~~f~~~~~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~lr~~l~~~~~-~-~~~~~lsi~v 155 (334)
T smart00636 79 -SDNFSSMLSDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKELREALDKEGA-E-GKGYLLTIAV 155 (334)
T ss_pred -CcchhHHHCCHHHHHHHHHHHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHHHHHHHHhcc-c-CCceEEEEEe
Confidence 688999999999999999999999999999999999999987 6889999999999999997622 1 3349999999
Q ss_pred ecccccccCCCC-hhhHhccCCeEEeeeeccCCCCCCCCCCCCCCCCCCCCCCC--CCCcHHHHHHHHHHcCCCCCceEE
Q 037639 180 SYSANYFGAINP-TSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALFSPDR--SQVSGDSGIRAWIQSGLSPKKIVL 256 (361)
Q Consensus 180 ~~~~~~~~~~~~-~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~~~~spl~~~~~--~~~~~~~~~~~~~~~g~~~~Kivl 256 (361)
++.+......|+ ++++.+++|+|+||+||+| ++ | +..++++||++.... ...+++.++++|++.|+|++||+|
T Consensus 156 ~~~~~~~~~~~~~~~~l~~~vD~v~vm~YD~~-~~-~--~~~~g~~spl~~~~~~~~~~~v~~~v~~~~~~gvp~~Klvl 231 (334)
T smart00636 156 PAGPDKIDKGYGDLPAIAKYLDFINLMTYDFH-GA-W--SNPTGHNAPLYAGPGDPEKYNVDYAVKYYLCKGVPPSKLVL 231 (334)
T ss_pred cCChHHHHhhhhhHHHHHhhCcEEEEeeeccC-CC-C--CCCCCCCCcCCCCCCCCCCccHHHHHHHHHHcCCCHHHeEE
Confidence 976554334578 5999999999999999999 98 8 778999999986542 245899999999999999999999
Q ss_pred ecccccccccccCCCCCCCCCCCccCC-------CCcccchHHHHHHhhcCCcEEEEecceeeEEEEe-C-CEEEEECCH
Q 037639 257 GFPFFGHSLQLANANNHGFWAPTSGVV-------NGGTMSYKEIRQFIMSTNATKVFNATVVSDYCYS-G-TTWIGYDDT 327 (361)
Q Consensus 257 Glp~yG~~~~~~~~~~~~~~~~~~~~~-------~~g~~~y~~i~~~~~~~~~~~~~d~~~~~~y~~~-~-~~~i~y~d~ 327 (361)
|||+||+.|++.++.++++++|+.|++ +++.++|.|||+.+ ++...||+.++++|.|. + ++||+|||+
T Consensus 232 Gip~YG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~y~ei~~~~---~~~~~~d~~~~~~y~~~~~~~~~v~ydd~ 308 (334)
T smart00636 232 GIPFYGRGWTLVDGSNNGPGAPFTGPATGGPGTWEGGVVDYREICKLL---GATVVWDDTAKAPYAYNPGTGQWVSYDDP 308 (334)
T ss_pred eeccccCccccCCCCcCCCCCcccCCCCCCCCCCcccchhHHHHHhhc---CcEEEEcCCCceeEEEECCCCEEEEcCCH
Confidence 999999999999888888888887754 46789999999865 89999999999999997 4 489999999
Q ss_pred HHHHHHHHHHHHcCCceEEEeeecCC
Q 037639 328 QSVNTKVKYAKDNGLLGYFAWQISQD 353 (361)
Q Consensus 328 ~S~~~K~~~~~~~gl~Gv~iW~l~~D 353 (361)
+|++.|+++++++||||+++|+|++|
T Consensus 309 ~Si~~K~~~~~~~~lgGv~iW~l~~D 334 (334)
T smart00636 309 RSIKAKADYVKDKGLGGVMIWELDAD 334 (334)
T ss_pred HHHHHHHHHHHhCCCCeEEEEeecCC
Confidence 99999999999999999999999998
No 5
>KOG2806 consensus Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-61 Score=462.46 Aligned_cols=331 Identities=31% Similarity=0.553 Sum_probs=283.7
Q ss_pred CCcEEEEEeCCCC-CCCCCCCCCCCCcEEEEEEEEeeCCCcEEEeCCcchHHHHHHHHHHHhhCCCceEEEEEcCCCCCc
Q 037639 25 QNAVKAAYWFSGS-NFPVADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLSIGGGNASK 103 (361)
Q Consensus 25 ~~~~~~~y~~~~~-~~~~~~~~~~~~thii~~~~~v~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~ 103 (361)
+...++||+..+. ...+.+++..+|||++|+|+.++.++..+...+.....+..+.+.+|.++|++|+|+|||||..++
T Consensus 56 c~~~~~~~~~~~~~~~~~~~~~~~~~TH~vfafa~~~~~~~~~~~~~~~~~~f~~~~~~~k~~n~~vK~llSIGG~~~ns 135 (432)
T KOG2806|consen 56 CEKSIVGYYPSRIGPETLEDQDPLKCTHLVYAFAKMKRVGYVVFCGARTMNRFSSYNQTAKSSNPTVKVMISIGGSHGNS 135 (432)
T ss_pred ccceeEEEeCCCCCCCCccccChhhcCcceEEEeeecccccEEeccchhhhhhHHHHHHHHhhCCCceEEEEecCCCCCc
Confidence 3456788887666 788999999999999999999998884444444445678888889999999999999999995458
Q ss_pred hhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCC--CccchhhHHHHHHHHHHHHHHHHHhcCCCceEEEEEeec
Q 037639 104 ESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYP--DNAQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSY 181 (361)
Q Consensus 104 ~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~--~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a~~~ 181 (361)
..|+.++++++.|+.|++++++++++|+|||||||||+| ...|+.+|..|++|||++|.++.+...+....|+.++..
T Consensus 136 ~~fs~~~s~~~~r~~FI~Sii~fl~~~~fDGvDL~We~P~~~~~d~~~~~~~i~elr~~~~~~~~~~~~~~~~l~~~v~~ 215 (432)
T KOG2806|consen 136 GLFSLVLSDRMIRAKFIESVVSFIKDYGFDGVDLAWEWPLFTPSDQLEFSRFIQELRSAFARETLKSPDTAKVLEAVVAD 215 (432)
T ss_pred cchhhhhcChHHHHHHHHHHHHHHHHcCCCceeeeeECCCCchhhHHHHHHHHHHHHHHHHHHhhccCCccceeeecccc
Confidence 899999999999999999999999999999999999999 669999999999999999999988776665455555554
Q ss_pred ccc-cccCCCChhhHhccCCeEEeeeeccCCCCCCCCCCCCCCCCCCCCCC---CCCCcHHHHHHHHHHcCCCCCceEEe
Q 037639 182 SAN-YFGAINPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALFSPD---RSQVSGDSGIRAWIQSGLSPKKIVLG 257 (361)
Q Consensus 182 ~~~-~~~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~~~~spl~~~~---~~~~~~~~~~~~~~~~g~~~~KivlG 257 (361)
++. .....||+++|.+++||||||+||++ |+ |.++..+||.||||.+. +...|++..+++|.+.|.|++|++||
T Consensus 216 ~~~~~~~~~ydi~~i~~~~DfiNi~syDf~-gp-w~~~~~tGp~aPl~~~~~~~~~~~Nvd~~~ky~~~~~~~~~Kl~~g 293 (432)
T KOG2806|consen 216 SKQSAYSDGYDYENLSKYVDFINIMSYDYY-GP-WSLPCFTGPPSPLYKGPSMTNPKMNVDSLLKYWTEKGLPPSKLVLA 293 (432)
T ss_pred CccchhhccCCHHHHHhhCCeEEEeccccc-CC-CcCCCcCCCCcccCCCCcccccCcchhhhHHHHhhcCCCchheEEE
Confidence 433 56778999999999999999999999 99 84344899999999753 35689999999999999999999999
Q ss_pred cccccccccccCCCCCCCCCCCccCC--------CCcccchHHHHHHhhcCCcEEEEecceeeEEEEe--CCEEEEECCH
Q 037639 258 FPFFGHSLQLANANNHGFWAPTSGVV--------NGGTMSYKEIRQFIMSTNATKVFNATVVSDYCYS--GTTWIGYDDT 327 (361)
Q Consensus 258 lp~yG~~~~~~~~~~~~~~~~~~~~~--------~~g~~~y~~i~~~~~~~~~~~~~d~~~~~~y~~~--~~~~i~y~d~ 327 (361)
+|+||+.|++.+...+ ++.+..+++ .+|.++|.|||+...+.+ ...||+.++++|+|+ +++||+|||+
T Consensus 294 ip~yg~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~ls~~ei~~~~~~~~-~~~~d~~~~~~Y~~~~~~~~wvtyen~ 371 (432)
T KOG2806|consen 294 LPFYGRSWQLLEDSRS-SAAPPFGQAAPVSMRSKGGGYMSYPEICERKINTG-VTHWDEETQTPYLYNIPYDQWVTYENE 371 (432)
T ss_pred EecceehhhhcCCcCC-CCCccCCCcccCccccccCceeeHHHHHHHhcccC-CceecCCceeeeEEecCCCeEEecCCH
Confidence 9999999999986554 433332222 467899999999665445 789999999999999 8999999999
Q ss_pred HHHHHHHHHHHHcCCceEEEeeecCCCCc-Ccc
Q 037639 328 QSVNTKVKYAKDNGLLGYFAWQISQDDNW-ILS 359 (361)
Q Consensus 328 ~S~~~K~~~~~~~gl~Gv~iW~l~~Dd~~-~l~ 359 (361)
+|++.|++|+++++|||+++|++++||.. +++
T Consensus 372 ~Si~~K~~Yvk~~~lGGv~iW~vd~DD~~~~~~ 404 (432)
T KOG2806|consen 372 RSIHIKADYAKDEGLGGVAIWNIDQDDESGSLL 404 (432)
T ss_pred HHHHHHHHHHHhcCCceEEEEeccCCCCCCccc
Confidence 99999999999999999999999999865 444
No 6
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=100.00 E-value=2.4e-61 Score=450.84 Aligned_cols=305 Identities=24% Similarity=0.387 Sum_probs=250.8
Q ss_pred EEEEEeCCC------CCCCCCCCCCCCCcEEEEEEEEeeCCCcEEEeCCcchHHHHHHHHHHHhhCCCceEEEEEcCCCC
Q 037639 28 VKAAYWFSG------SNFPVADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLSIGGGNA 101 (361)
Q Consensus 28 ~~~~y~~~~------~~~~~~~~~~~~~thii~~~~~v~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~ 101 (361)
+++|||+.+ ..+.++++|.++||||+|+|+.+++++ ++...+ ....+.++. .+| ++|+++|||||+.
T Consensus 1 ~~v~Y~~~w~~~r~~~~~~~~~i~~~~~THi~yaf~~~~~~g-~l~~~~-~~~~~~~~~-~~k----~lkvllsiGG~~~ 73 (345)
T cd02878 1 KNIAYFEAYNLDRPCLNMDVTQIDTSKYTHIHFAFANITSDF-SVDVSS-VQEQFSDFK-KLK----GVKKILSFGGWDF 73 (345)
T ss_pred CEEEEEChhhcCCCCCCCCHhHCCcccCCEEEEEeEeecCCC-eEeecc-cHHHHHHHH-hhc----CcEEEEEEeCCCC
Confidence 478999853 357799999999999999999999766 777653 234455444 232 3999999999976
Q ss_pred Cch-----hHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc-----------cchhhHHHHHHHHHHHHHHHH
Q 037639 102 SKE-----SFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN-----------AQMSDFGTLLTEWRSAVAAEA 165 (361)
Q Consensus 102 ~~~-----~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~-----------~~~~~~~~~l~~l~~~l~~~~ 165 (361)
+.. .|+.++ +++.|++|++++++++++|+|||||||||+|.. +|+++|+.||++||++|++.
T Consensus 74 s~~~~~~~~f~~~~-~~~~R~~Fi~si~~~~~~~~fDGidiDwE~P~~~~~~~~~~~~~~d~~n~~~ll~elr~~l~~~- 151 (345)
T cd02878 74 STSPSTYQIFRDAV-KPANRDTFANNVVNFVNKYNLDGVDFDWEYPGAPDIPGIPAGDPDDGKNYLEFLKLLKSKLPSG- 151 (345)
T ss_pred CCCCccchhhHhhc-CHHHHHHHHHHHHHHHHHcCCCceeecccCCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCcC-
Confidence 332 488888 999999999999999999999999999999852 58899999999999999762
Q ss_pred HhcCCCceEEEEEeecccccccCCCChhhHhccCCeEEeeeeccCCCCCCCCCCCCCCCCCCC---CCCC---CCCcHHH
Q 037639 166 RSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALF---SPDR---SQVSGDS 239 (361)
Q Consensus 166 ~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~~~~spl~---~~~~---~~~~~~~ 239 (361)
++||+++|+.... ...|+++++.++||+|+||+||+| |+ | ...+.+.+|.. .+.+ ...+++.
T Consensus 152 -------~~ls~a~~~~~~~-~~~yd~~~l~~~vD~i~vMtYD~~-g~-w--~~~~~~~~p~~p~~~~~~~~~~~~~~~~ 219 (345)
T cd02878 152 -------KSLSIAAPASYWY-LKGFPIKDMAKYVDYIVYMTYDLH-GQ-W--DYGNKWASPGCPAGNCLRSHVNKTETLD 219 (345)
T ss_pred -------cEEEEEcCCChhh-hcCCcHHHHHhhCcEEEEEeeccc-CC-c--CccCCcCCCCCCcccccccCCCchhHHH
Confidence 7899998875443 346899999999999999999999 99 8 44444444421 1011 1235788
Q ss_pred HHHHHHHcCCCCCceEEecccccccccccCCCCCCCCCCCccCC----------CCcccchHHHHHH-hhcCCcEEEEec
Q 037639 240 GIRAWIQSGLSPKKIVLGFPFFGHSLQLANANNHGFWAPTSGVV----------NGGTMSYKEIRQF-IMSTNATKVFNA 308 (361)
Q Consensus 240 ~~~~~~~~g~~~~KivlGlp~yG~~~~~~~~~~~~~~~~~~~~~----------~~g~~~y~~i~~~-~~~~~~~~~~d~ 308 (361)
+|++|++.|+|++||+||+|+|||.|++.++.++++++|+.|++ ..+.+.|.++|.. +...+++..||+
T Consensus 220 ~v~~~~~~Gvp~~KlvlGip~YGr~~~l~~~~~~~~~~p~~g~~~~~~~g~~~~~~g~~~~~e~~~~~~~~~~~~~~~d~ 299 (345)
T cd02878 220 ALSMITKAGVPSNKVVVGVASYGRSFKMADPGCTGPGCTFTGPGSGAEAGRCTCTAGYGAISEIEIIDISKSKNKRWYDT 299 (345)
T ss_pred HHHHHHHcCCCHHHeEEeeccccceeeccCCCCCCCCCcccCCCCCCCCCCCCCchhhhhHHHHHHHHhccCCCcEEEec
Confidence 99999999999999999999999999999999999999998764 2234556999985 455789999999
Q ss_pred ceeeEEE-EeCCEEEEECCHHHHHHHHHHHHHcCCceEEEeeecCC
Q 037639 309 TVVSDYC-YSGTTWIGYDDTQSVNTKVKYAKDNGLLGYFAWQISQD 353 (361)
Q Consensus 309 ~~~~~y~-~~~~~~i~y~d~~S~~~K~~~~~~~gl~Gv~iW~l~~D 353 (361)
.++++|. |.+++||+|||++|++.|++|++++||||+|+|+|++|
T Consensus 300 ~~~~~y~~~~~~~wv~ydd~~Si~~K~~y~~~~~LgGv~~W~ld~~ 345 (345)
T cd02878 300 DSDSDILVYDDDQWVAYMSPATKAARIEWYKGLNFGGTSDWAVDLQ 345 (345)
T ss_pred CCCccEEEEcCCEEEEcCCHHHHHHHHHHHHhCCCceEEEeeccCC
Confidence 9999986 66779999999999999999999999999999999987
No 7
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=100.00 E-value=2e-60 Score=441.82 Aligned_cols=283 Identities=34% Similarity=0.579 Sum_probs=245.2
Q ss_pred EEEEeCCCCCC----CCC-CCCCCCCcEEEEEEEEeeCCCcEEEeCC-------------------cchHHHHHHHHHHH
Q 037639 29 KAAYWFSGSNF----PVA-DIDSILFTHLFCAFADLDSQNFQVTVSS-------------------ENQAIFSSFTRTVQ 84 (361)
Q Consensus 29 ~~~y~~~~~~~----~~~-~~~~~~~thii~~~~~v~~~~~~~~~~~-------------------~~~~~~~~~~~~lk 84 (361)
|+|||+++..+ .+. ++|.++||||+|+|+.+++++..+...+ .....+.++. .+|
T Consensus 1 v~~Y~~~W~~~~~~~~~~~~i~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lk 79 (322)
T cd06548 1 VVGYFTNWGIYGRNYFVTDDIPADKLTHINYAFADIDGDGGVVTSDDEAADEAAQSVDGGADTDDQPLKGNFGQLR-KLK 79 (322)
T ss_pred CEEEeCCCcccCCCCCcccCCChhHCcEEEEEeeeEcCCCCeEccChhhhhhccccCCcccccCCccchhHHHHHH-HHH
Confidence 58999865444 333 5899999999999999998874443221 1234566665 799
Q ss_pred hhCCCceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc----------cchhhHHHHH
Q 037639 85 QKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN----------AQMSDFGTLL 154 (361)
Q Consensus 85 ~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~----------~~~~~~~~~l 154 (361)
+++|++|+++|||||+. ++.|+.++++++.|++|++++++++++|+|||||||||+|.. +++.+|+.||
T Consensus 80 ~~~p~lkvl~siGG~~~-s~~f~~~~~~~~~r~~Fi~siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~~~ll 158 (322)
T cd06548 80 QKNPHLKILLSIGGWTW-SGGFSDAAATEASRAKFADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENFTLLL 158 (322)
T ss_pred HhCCCCEEEEEEeCCCC-CCCchhHhCCHHHHHHHHHHHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHHHHHHH
Confidence 99999999999999976 679999999999999999999999999999999999999974 6889999999
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEEeecccccccCCCChhhHhccCCeEEeeeeccCCCCCCCCCCCCCCCCCCCCCCC--
Q 037639 155 TEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALFSPDR-- 232 (361)
Q Consensus 155 ~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~~~~spl~~~~~-- 232 (361)
++||++|++.++.+++. ++||+++|+.+.. ...++++++.++||+|++|+||+| |+ | +..+++++||+....
T Consensus 159 ~~Lr~~l~~~~~~~~~~-~~Ls~av~~~~~~-~~~~~~~~l~~~vD~vnlMtYD~~-g~-w--~~~~g~~spL~~~~~~~ 232 (322)
T cd06548 159 KELREALDALGAETGRK-YLLTIAAPAGPDK-LDKLEVAEIAKYLDFINLMTYDFH-GA-W--SNTTGHHSNLYASPADP 232 (322)
T ss_pred HHHHHHHHHhhhccCCc-eEEEEEccCCHHH-HhcCCHHHHhhcCCEEEEEEeecc-CC-C--CCCCCCCCCCCCCCCCC
Confidence 99999999876554443 8999999876543 234689999999999999999999 99 8 789999999986542
Q ss_pred -CCCcHHHHHHHHHHcCCCCCceEEecccccccccccCCCCCCCCCCCccCCCCcccchHHHHHHhhcCCcEEEEeccee
Q 037639 233 -SQVSGDSGIRAWIQSGLSPKKIVLGFPFFGHSLQLANANNHGFWAPTSGVVNGGTMSYKEIRQFIMSTNATKVFNATVV 311 (361)
Q Consensus 233 -~~~~~~~~~~~~~~~g~~~~KivlGlp~yG~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~d~~~~ 311 (361)
...+++.++++|++.|+|++||+||||+||+.|++ +...||+.++
T Consensus 233 ~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~~~~----------------------------------~~~~~D~~~~ 278 (322)
T cd06548 233 PGGYSVDAAVNYYLSAGVPPEKLVLGVPFYGRGWTG----------------------------------YTRYWDEVAK 278 (322)
T ss_pred CCCccHHHHHHHHHHcCCCHHHeEEEecccccccCC----------------------------------cEEEEcCCcc
Confidence 35789999999999999999999999999999962 6789999999
Q ss_pred eEEEEeC--CEEEEECCHHHHHHHHHHHHHcCCceEEEeeecCC
Q 037639 312 SDYCYSG--TTWIGYDDTQSVNTKVKYAKDNGLLGYFAWQISQD 353 (361)
Q Consensus 312 ~~y~~~~--~~~i~y~d~~S~~~K~~~~~~~gl~Gv~iW~l~~D 353 (361)
++|.|++ ++||+|||++|++.|++|++++||||+++|++++|
T Consensus 279 ~~y~~~~~~~~~v~ydd~~Si~~K~~~a~~~~LgGv~~W~l~~D 322 (322)
T cd06548 279 APYLYNPSTKTFISYDDPRSIKAKADYVKDKGLGGVMFWELSGD 322 (322)
T ss_pred eeEEEeCCCCeEEEeCCHHHHHHHHHHHHhcCCccEEEEeccCC
Confidence 9999987 78999999999999999999999999999999998
No 8
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-59 Score=425.20 Aligned_cols=332 Identities=27% Similarity=0.466 Sum_probs=264.0
Q ss_pred cCCCcEEEEEeCCCC-----CCCCCCCCCCCCcEEEEEEEEeeCCCcE----EE---------------eCCcc--hHHH
Q 037639 23 AGQNAVKAAYWFSGS-----NFPVADIDSILFTHLFCAFADLDSQNFQ----VT---------------VSSEN--QAIF 76 (361)
Q Consensus 23 ~~~~~~~~~y~~~~~-----~~~~~~~~~~~~thii~~~~~v~~~~~~----~~---------------~~~~~--~~~~ 76 (361)
..+++++++||+++. .|.+.+||++++|||.|+|+.|+.++.. +. +.++. ....
T Consensus 34 ~d~~~rvvgYY~sWs~~d~~~y~~~DIp~~qlTHInYAF~~I~~~g~~~~~~~~~~~~~~~~~~~~~~e~dp~~~~~~G~ 113 (441)
T COG3325 34 SDDQFKVVGYYTSWSQYDRQDYFPGDIPLDQLTHINYAFLDINSDGKSIESWVADEAALYGVPNIEGVELDPWSDPLKGH 113 (441)
T ss_pred CCCCceEEEEecccccCCCcccccccCCHHHhceeeEEEEEecCCCCccccccccchhhccccCcCceeeccccccccch
Confidence 356789999999532 6778999999999999999999988732 11 11111 1222
Q ss_pred HHHHHHHHhhCCCceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc----------cc
Q 037639 77 SSFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN----------AQ 146 (361)
Q Consensus 77 ~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~----------~~ 146 (361)
...+..+|+++|++|+++|||||+. +..|+.++.+.+.|++|+.+++++|++|+|||||||||||++ .+
T Consensus 114 ~~~L~~lk~~~~d~k~l~SIGGWs~-S~~F~~~aad~a~re~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~~~~~~~~~d 192 (441)
T COG3325 114 FGALFDLKATYPDLKTLISIGGWSD-SGGFSDMAADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCGRPKD 192 (441)
T ss_pred HHHHHHHhhhCCCceEEEeeccccc-CCCcchhhcCHHHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCCCCCCccc
Confidence 3345579999999999999999987 899999999999999999999999999999999999999985 68
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecccccccCCCChhhHhccCCeEEeeeeccCCCCCCCCCCCCCCCCC
Q 037639 147 MSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAA 226 (361)
Q Consensus 147 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~~~~sp 226 (361)
+++|+.||++||++|+..+-+++|. ++||+|.|+...... ..+..++.++|||||+||||+| |. | ...+||++|
T Consensus 193 ~~ny~~Ll~eLR~~LD~a~~edgr~-Y~LTiA~~as~~~l~-~~~~~~~~~~vDyiNiMTYDf~-G~-W--n~~~Gh~a~ 266 (441)
T COG3325 193 KANYVLLLQELRKKLDKAGVEDGRH-YQLTIAAPASKDKLE-GLNHAEIAQYVDYINIMTYDFH-GA-W--NETLGHHAA 266 (441)
T ss_pred HHHHHHHHHHHHHHHhhcccccCce-EEEEEecCCchhhhh-cccHHHHHHHHhhhheeeeecc-cc-c--ccccccccc
Confidence 8999999999999999998888876 999999998777644 5688999999999999999999 99 9 999999999
Q ss_pred CCCCCC------CCC------cHHHHHHHHHHcCCCCCceEEecccccccccccCCCCCC----CCCCCc--cCC----C
Q 037639 227 LFSPDR------SQV------SGDSGIRAWIQSGLSPKKIVLGFPFFGHSLQLANANNHG----FWAPTS--GVV----N 284 (361)
Q Consensus 227 l~~~~~------~~~------~~~~~~~~~~~~g~~~~KivlGlp~yG~~~~~~~~~~~~----~~~~~~--~~~----~ 284 (361)
||.... ... .....++.....++||+|||||+|+|||.|........+ ..+... |.. .
T Consensus 267 Ly~~~~d~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~klvlG~p~YgRgw~~v~~~~~~~~~~~~q~~~n~g~~~Gtw~ 346 (441)
T COG3325 267 LYGTPKDPPLANGGFYVDAEVDGIDWLEEGFAGDVPPSKLVLGMPFYGRGWNGVDGGSLGTCPGLYQGLDNSGIPKGTWE 346 (441)
T ss_pred cccCCCCCccccCCeeEEEEechhHHHHhhhccCCCCceEEeeccccccccccccCcccCCCCCcccccCCCCCCCCccc
Confidence 994221 111 222345555567799999999999999999887754321 111111 111 1
Q ss_pred Cccc--chH---HH-HHHhhcCCcEEEEecceeeEEEEeCC--EEEEECCHHHHHHHHHHHHHcCCceEEEeeecCCCCc
Q 037639 285 GGTM--SYK---EI-RQFIMSTNATKVFNATVVSDYCYSGT--TWIGYDDTQSVNTKVKYAKDNGLLGYFAWQISQDDNW 356 (361)
Q Consensus 285 ~g~~--~y~---~i-~~~~~~~~~~~~~d~~~~~~y~~~~~--~~i~y~d~~S~~~K~~~~~~~gl~Gv~iW~l~~Dd~~ 356 (361)
.+.+ .|. .+ .+....+++++.||+..++||+|+.+ .+|+|||++|++.|++||++++|||+|+|++++|-.+
T Consensus 347 a~n~~~~~~~~~~l~~n~~~~~g~~~~~d~~a~apyL~n~~~~vFiSyDd~rSvkaK~eYv~~n~LGG~m~We~sgD~n~ 426 (441)
T COG3325 347 AGNGDKDYGKAYDLDANNAGKNGYERYWDDVAKAPYLYNPEKGVFISYDDPRSVKAKAEYVADNNLGGMMFWEISGDENG 426 (441)
T ss_pred ccccCccchhhccccccccCCCCeeEecccccccceeecCCCCeEEEccCCcchhhHHHHHhhcCccceEEEEecCCcch
Confidence 1112 221 11 12234568999999999999999764 5999999999999999999999999999999999888
Q ss_pred CcccC
Q 037639 357 ILSRE 361 (361)
Q Consensus 357 ~l~~~ 361 (361)
.|++|
T Consensus 427 ~llna 431 (441)
T COG3325 427 VLLNA 431 (441)
T ss_pred hHHHH
Confidence 88875
No 9
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=100.00 E-value=4.7e-56 Score=417.97 Aligned_cols=320 Identities=33% Similarity=0.617 Sum_probs=269.0
Q ss_pred cEEEEEeCCCCC-----CCCCCCCCCCCcEEEEEEEEeeCCCcEEE-----eCCcchHHHHHHHHHHHhhCCCceEEEEE
Q 037639 27 AVKAAYWFSGSN-----FPVADIDSILFTHLFCAFADLDSQNFQVT-----VSSENQAIFSSFTRTVQQKNPAVKALLSI 96 (361)
Q Consensus 27 ~~~~~y~~~~~~-----~~~~~~~~~~~thii~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~lk~~~~~~kvllsi 96 (361)
++++|||..+.. +.+++++.+.||||+|+|+.++.++.... ..........+.++.+|+++|++||++||
T Consensus 1 ~~vv~Y~~~~~~~~~~~~~~~~i~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvllsi 80 (343)
T PF00704_consen 1 KRVVGYYSNWNSYRPGSYKIEDIPWSKCTHIVYAFAGIDPNGNLNYPWNFDDDNDGDSSGFKNLKELKAKNPGVKVLLSI 80 (343)
T ss_dssp BEEEEEEEGGGGSSTGCSHGGGSHTTTESEEEEEEEEEETTTTEEEGTTTECSSTTHHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CEEEEEECCcCCCCCCCCCHHHCCcccCCEEEEEeeeecCCCceecccccccccCccccchhHHHHHHhhccCceEEEEe
Confidence 478999985432 56889999999999999999998884432 22333333444455788999999999999
Q ss_pred cCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCcc----chhhHHHHHHHHHHHHHHHHHhcCCCc
Q 037639 97 GGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNA----QMSDFGTLLTEWRSAVAAEARSSGKPA 172 (361)
Q Consensus 97 gg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~~----~~~~~~~~l~~l~~~l~~~~~~~~~~~ 172 (361)
||+......|..++.+++.|++|+++++++|++|+|||||||||++... ++.+|..||++||.+|++.++.. + +
T Consensus 81 gg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~-~-~ 158 (343)
T PF00704_consen 81 GGWGMSSDGFSQLLSNPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKALKRANRSG-K-G 158 (343)
T ss_dssp EETTSSHHHHHHHHHSHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHHHHHHHHHH-S-T
T ss_pred ccccccccccccccccHHHHHHHHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhhhccccccc-c-e
Confidence 9997633399999999999999999999999999999999999999886 99999999999999999976543 2 3
Q ss_pred eEEEEEeecccccccCCCChhhHhccCCeEEeeeeccCCCCCCCCCCCCCCCCCCCCCCC--CCCcHHHHHHHHHHcCCC
Q 037639 173 LLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALFSPDR--SQVSGDSGIRAWIQSGLS 250 (361)
Q Consensus 173 ~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~~~~spl~~~~~--~~~~~~~~~~~~~~~g~~ 250 (361)
++||+++|+.+.. ...++++.+.++||+|++|+||++ ++ | +..+++++|+++..+ ...+++.++++|+..|+|
T Consensus 159 ~~ls~a~p~~~~~-~~~~~~~~l~~~vD~v~~m~yD~~-~~-~--~~~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~g~p 233 (343)
T PF00704_consen 159 YILSVAVPPSPDY-YDKYDYKELAQYVDYVNLMTYDYH-GP-W--SDVTGPNAPLYDSSWDSNYYSVDSAVQYWIKAGVP 233 (343)
T ss_dssp SEEEEEEECSHHH-HTTHHHHHHHTTSSEEEEETTSSS-ST-T--SSBETTSSSSSHTTTSGTSSSHHHHHHHHHHTTST
T ss_pred eEEeecccccccc-ccccccccccccccccccccccCC-CC-c--ccccccccccccCCccCCCceeeeehhhhccccCC
Confidence 8999999876653 233488999999999999999999 87 7 668999999986653 467899999999999999
Q ss_pred CCceEEecccccccccccCCCCCCCCCCC-----ccCCCCcccchHHHHHHhhcCCcEEEEecceeeEEEEeC--CEEEE
Q 037639 251 PKKIVLGFPFFGHSLQLANANNHGFWAPT-----SGVVNGGTMSYKEIRQFIMSTNATKVFNATVVSDYCYSG--TTWIG 323 (361)
Q Consensus 251 ~~KivlGlp~yG~~~~~~~~~~~~~~~~~-----~~~~~~g~~~y~~i~~~~~~~~~~~~~d~~~~~~y~~~~--~~~i~ 323 (361)
++||+||+|+||+.|++.....+...++. .+...++.++|.++|..++.+++...||+.++++|.+.+ +.||+
T Consensus 234 ~~Kl~lglp~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~~~i~ 313 (343)
T PF00704_consen 234 PSKLVLGLPFYGRSWTLVNGSPNGPWGPAYWSPGKGTKNAGILSYYELCALLKSNGYTVQWDDTAQAPYAYNDDKKHWIS 313 (343)
T ss_dssp GGGEEEEEESEEEEEESSSSTTSTTTBBEESEETTTTSBTTEEEHHHHHHHTHHTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred hhheeecCCcccccceecCCcCCCCCCcccccccccccCCCccccccchhhcccCCcceEEeecccceEEEecCCCeEEE
Confidence 99999999999999999987776665543 222367899999999999889999999999999999987 68999
Q ss_pred ECCHHHHHHHHHHHHHcCCceEEEeeecCC
Q 037639 324 YDDTQSVNTKVKYAKDNGLLGYFAWQISQD 353 (361)
Q Consensus 324 y~d~~S~~~K~~~~~~~gl~Gv~iW~l~~D 353 (361)
|||++|++.|+++++++||||+++|+|++|
T Consensus 314 ~e~~~Si~~K~~~v~~~glgGv~~W~l~~D 343 (343)
T PF00704_consen 314 YEDPRSIKAKMDYVKEKGLGGVAIWSLDQD 343 (343)
T ss_dssp E--HHHHHHHHHHHHHTT-SEEEEETGGGS
T ss_pred eCCHHHHHHHHHHHHhCCCCEEEEEecCCC
Confidence 999999999999999999999999999998
No 10
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=100.00 E-value=2.7e-55 Score=406.96 Aligned_cols=291 Identities=16% Similarity=0.281 Sum_probs=240.4
Q ss_pred EEEEEeCCCC--CCCCCCCCCCCCcEEEEEEEEeeCCCcEEEeCCcchHHHHHHHHHHHhhCCCceEE--EEEcCCCCCc
Q 037639 28 VKAAYWFSGS--NFPVADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKAL--LSIGGGNASK 103 (361)
Q Consensus 28 ~~~~y~~~~~--~~~~~~~~~~~~thii~~~~~v~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvl--lsigg~~~~~ 103 (361)
.++|||+++. .+.+.+++.++||||+|+|+.+++++..+...+..+.. ..++..+|+++|++||+ +++|||+ .
T Consensus 4 ~~~~y~~~W~~~~~~~~~~~~~~lthv~~~f~~i~~~g~~~~~~~~~~~~-~~~~~~lk~~~~~lkvlp~i~~gg~~--~ 80 (318)
T cd02876 4 PVLGYVTPWNSHGYDVAKKFAAKFTHVSPVWLQIKRKGNKFVIEGTHDID-KGWIEEVRKANKNIKILPRVLFEGWS--Y 80 (318)
T ss_pred ceEEEEcCcCccchHHHHHHhccCCEecceEEEEecCCCeeeeecCcchh-hHHHHHHHhhCCCcEEEeEEEECCCC--H
Confidence 4789998644 45678888999999999999999887655554322111 23456799999999999 6779986 3
Q ss_pred hhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEee-ecCCCc----cchhhHHHHHHHHHHHHHHHHHhcCCCceEEEEE
Q 037639 104 ESFAAMASQAASRKSFIDSSINLARSLNFHGLDID-WEYPDN----AQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAA 178 (361)
Q Consensus 104 ~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD-~e~~~~----~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a 178 (361)
+.|+.++++++.|++|++++++++++||||||||| ||+|.. +++.+|+.||++||++|++.+ +.++++
T Consensus 81 ~~f~~~~~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~~~l~el~~~l~~~~-------~~l~~~ 153 (318)
T cd02876 81 QDLQSLLNDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQLVIHLGETLHSAN-------LKLILV 153 (318)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhcccCCHHHHHHHHHHHHHHHHHHhhcC-------CEEEEE
Confidence 57999999999999999999999999999999999 999975 489999999999999999763 677787
Q ss_pred eeccccc-----ccCCCChhhHhccCCeEEeeeeccCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcC-CCCC
Q 037639 179 VSYSANY-----FGAINPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQSG-LSPK 252 (361)
Q Consensus 179 ~~~~~~~-----~~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~~~~spl~~~~~~~~~~~~~~~~~~~~g-~~~~ 252 (361)
++++... ....||+++|.++||+|+||+||+| + +..+|++||+ .+++.+++++++.| +|++
T Consensus 154 v~~~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~-~-----~~~~g~~apl-------~~v~~~v~~~~~~~~vp~~ 220 (318)
T cd02876 154 IPPPREKGNQNGLFTRKDFEKLAPHVDGFSLMTYDYS-S-----PQRPGPNAPL-------SWVRSCLELLLPESGKKRA 220 (318)
T ss_pred EcCccccccccccccccCHHHHHhhccEEEEEeeccC-C-----CCCCCCCCCc-------HHHHHHHHHHHhcCCCCHH
Confidence 7754321 2335799999999999999999999 3 3578999988 46899999999987 9999
Q ss_pred ceEEecccccccccccCCCCCCCCCCCccCCCCcccchHHHHHHhhcCCcEEEEecceee-EEEEeC---CEEEEECCHH
Q 037639 253 KIVLGFPFFGHSLQLANANNHGFWAPTSGVVNGGTMSYKEIRQFIMSTNATKVFNATVVS-DYCYSG---TTWIGYDDTQ 328 (361)
Q Consensus 253 KivlGlp~yG~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~d~~~~~-~y~~~~---~~~i~y~d~~ 328 (361)
||+||||+|||+|++.+ .+ +.+++.+.++++++.+++..||+.++. +|.|.+ ++||||||++
T Consensus 221 KlvlGip~YG~~w~~~~-----~~---------~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~y~~~~~~~~v~ydd~~ 286 (318)
T cd02876 221 KILLGLNFYGNDYTLPG-----GG---------GAITGSEYLKLLKSNKPKLQWDEKSAEHFFEYKNKGGKHAVFYPTLK 286 (318)
T ss_pred HeEEeccccccccccCC-----CC---------ceeehHHHHHHHHhcCCCceeccCCCcceEEEecCCCcEEEEeCCHH
Confidence 99999999999998643 11 234555666666677889999998655 588865 6799999999
Q ss_pred HHHHHHHHHHHcCCceEEEeeecCCCCc
Q 037639 329 SVNTKVKYAKDNGLLGYFAWQISQDDNW 356 (361)
Q Consensus 329 S~~~K~~~~~~~gl~Gv~iW~l~~Dd~~ 356 (361)
|++.|+++++++|+ |+|+|+||+|++.
T Consensus 287 Si~~K~~~a~~~~l-Gv~~W~lg~~~~~ 313 (318)
T cd02876 287 SIQLRLDLAKELGT-GISIWELGQGLDY 313 (318)
T ss_pred HHHHHHHHHHHcCC-cEEEEcccCCchH
Confidence 99999999999999 9999999999653
No 11
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=100.00 E-value=2e-52 Score=391.31 Aligned_cols=295 Identities=23% Similarity=0.289 Sum_probs=233.7
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCCCcEEEEEEEEeeCCCcEEEeCCcchHHHHHHHHHHHhhCCCceEEEEEcCCCCCch
Q 037639 25 QNAVKAAYWFSGSNFPVADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLSIGGGNASKE 104 (361)
Q Consensus 25 ~~~~~~~y~~~~~~~~~~~~~~~~~thii~~~~~v~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~ 104 (361)
..+.|+||.... ..-...+++.+|||.++ + ..+ .+++..+|++ ++||+++. +..
T Consensus 34 ~~~~~~~~~~~~--~~~~~~~~~~~tti~~~-------~------~~~----~~~~~~A~~~--~v~v~~~~-~~~---- 87 (358)
T cd02875 34 PRFEFLVFSVNS--TNYPNYDWSKVTTIAIF-------G------DID----DELLCYAHSK--GVRLVLKG-DVP---- 87 (358)
T ss_pred CceEEEEEEeCC--CcCcccccccceEEEec-------C------CCC----HHHHHHHHHc--CCEEEEEC-ccC----
Confidence 457789999643 44567788999999976 1 111 1355445555 99999872 221
Q ss_pred hHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc---cchhhHHHHHHHHHHHHHHHHHhcCCCceEEEEEeec
Q 037639 105 SFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN---AQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSY 181 (361)
Q Consensus 105 ~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~---~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a~~~ 181 (361)
...+++++.|++|++++++++++|||||||||||+|.. +++++|+.|+++||++|+++++ +++||+++++
T Consensus 88 --~~~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~~l~~~~~-----~~~Lsvav~~ 160 (358)
T cd02875 88 --LEQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTKAFKKENP-----GYQISFDVAW 160 (358)
T ss_pred --HHHcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHHHHhhcCC-----CcEEEEEEec
Confidence 23578999999999999999999999999999999964 6899999999999999997632 3889999987
Q ss_pred ccccccC-CCChhhHhccCCeEEeeeeccCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCceEEeccc
Q 037639 182 SANYFGA-INPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQSGLSPKKIVLGFPF 260 (361)
Q Consensus 182 ~~~~~~~-~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~~~~spl~~~~~~~~~~~~~~~~~~~~g~~~~KivlGlp~ 260 (361)
.+..... .||+++|.++||+|+||+||+| ++.|.+...+++++|+ .+++.++++|+..|+|++||+||+|+
T Consensus 161 ~p~~~~~~~yd~~~l~~~vD~v~lMtYD~h-~~~w~~~~~~g~~ap~-------~~v~~~v~~~~~~gvp~~KLvLGip~ 232 (358)
T cd02875 161 SPSCIDKRCYDYTGIADASDFLVVMDYDEQ-SQIWGKECIAGANSPY-------SQTLSGYNNFTKLGIDPKKLVMGLPW 232 (358)
T ss_pred CcccccccccCHHHHHhhCCEeeEEeeccc-CCCCCCCCCCCCCCCc-------hhHHHHHHHHHHcCCCHHHeEEEeCC
Confidence 6543333 4899999999999999999999 7546323467888877 46889999999999999999999999
Q ss_pred ccccccccCCCCC-----CCCCCCccCC----CCcccchHHHHHHhhcCCcEEEEecceeeEEE-EeC---C-EEEEECC
Q 037639 261 FGHSLQLANANNH-----GFWAPTSGVV----NGGTMSYKEIRQFIMSTNATKVFNATVVSDYC-YSG---T-TWIGYDD 326 (361)
Q Consensus 261 yG~~~~~~~~~~~-----~~~~~~~~~~----~~g~~~y~~i~~~~~~~~~~~~~d~~~~~~y~-~~~---~-~~i~y~d 326 (361)
|||+|++.+.... ..+.|..|.+ .++.++|.+||+.++..++...||+.++++|. |.+ . +||||||
T Consensus 233 YGr~w~~~~~~~~~~~~~~~~~p~~g~~~~~~~g~~i~Y~ei~~~~~~~~~~~~wD~~~~~py~~y~d~~g~~~~V~ydD 312 (358)
T cd02875 233 YGYDYPCLNGNLEDVVCTIPKVPFRGANCSDAAGRQIPYSEIMKQINSSIGGRLWDSEQKSPFYNYKDKQGNLHQVWYDN 312 (358)
T ss_pred CCCceeCCCCcccCcccCCCCCCcCCCCCcCCCCCccCHHHHHHHHhcCCCceeeccccccceEEEecCCCcEEEEEeCC
Confidence 9999987654311 1233333321 24579999999988877889999999999986 432 2 5999999
Q ss_pred HHHHHHHHHHHHHcCCceEEEeeecCCCCcCccc
Q 037639 327 TQSVNTKVKYAKDNGLLGYFAWQISQDDNWILSR 360 (361)
Q Consensus 327 ~~S~~~K~~~~~~~gl~Gv~iW~l~~Dd~~~l~~ 360 (361)
++|++.|+++++++||||+++|++|+||....-+
T Consensus 313 ~~Si~~K~~~a~~~gL~Gv~iW~ld~dD~~g~~~ 346 (358)
T cd02875 313 PQSLSIKVAYAKNLGLKGIGMWNGDLLDYSGLPI 346 (358)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeccccccCCCch
Confidence 9999999999999999999999999998765543
No 12
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=100.00 E-value=5.6e-52 Score=384.53 Aligned_cols=291 Identities=19% Similarity=0.294 Sum_probs=241.0
Q ss_pred EEEEEeCCCCCC--CCCCCCCCCCcEEEEEEEEeeCCCcEEEeCCcchHHHHHHHHHHHhhCCCceEEEEEcCCC---CC
Q 037639 28 VKAAYWFSGSNF--PVADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLSIGGGN---AS 102 (361)
Q Consensus 28 ~~~~y~~~~~~~--~~~~~~~~~~thii~~~~~v~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~---~~ 102 (361)
.++||+.++... ....-..+++|||++.++.++++| .+... . ..++++.+|++ ++|++++|||+. .+
T Consensus 3 ~~~g~~~~~~~~~~~~~~~~~~~lt~v~p~w~~~~~~g-~~~~~--~---~~~~~~~a~~~--~~kv~~~i~~~~~~~~~ 74 (313)
T cd02874 3 EVLGYYTPRNGSDYESLRANAPYLTYIAPFWYGVDADG-TLTGL--P---DERLIEAAKRR--GVKPLLVITNLTNGNFD 74 (313)
T ss_pred eEEEEEecCCCchHHHHHHhcCCCCEEEEEEEEEcCCC-CCCCC--C---CHHHHHHHHHC--CCeEEEEEecCCCCCCC
Confidence 478999865443 444456789999999999999877 43221 1 23566566665 899999999986 45
Q ss_pred chhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCccchhhHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecc
Q 037639 103 KESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYS 182 (361)
Q Consensus 103 ~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a~~~~ 182 (361)
++.|+.++++++.|++|++++++++++|||||||||||++..+++.+|+.||++||.+|++.+ ++|++++++.
T Consensus 75 ~~~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~~~d~~~~~~fl~~lr~~l~~~~-------~~lsv~~~p~ 147 (313)
T cd02874 75 SELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFENVPPEDREAYTQFLRELSDRLHPAG-------YTLSTAVVPK 147 (313)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEecccCCHHHHHHHHHHHHHHHHHhhhcC-------cEEEEEecCc
Confidence 678999999999999999999999999999999999999988999999999999999998753 7888877654
Q ss_pred cc-----cccCCCChhhHhccCCeEEeeeeccCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCceEEe
Q 037639 183 AN-----YFGAINPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQSGLSPKKIVLG 257 (361)
Q Consensus 183 ~~-----~~~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~~~~spl~~~~~~~~~~~~~~~~~~~~g~~~~KivlG 257 (361)
.. .+...|++++|.+++|+|++|+||+| ++ | ..++|++|+ .+++..++++. .|+|++||+||
T Consensus 148 ~~~~~~~~~~~~~~~~~l~~~vD~v~lm~YD~~-~~-~---~~~gp~a~~-------~~~~~~~~~~~-~gvp~~KlvlG 214 (313)
T cd02874 148 TSADQFGNWSGAYDYAAIGKIVDFVVLMTYDWH-WR-G---GPPGPVAPI-------GWVERVLQYAV-TQIPREKILLG 214 (313)
T ss_pred cccccccccccccCHHHHHhhCCEEEEEEeccC-CC-C---CCCCccCCh-------HHHHHHHHHHH-hcCCHHHEEEe
Confidence 32 22356899999999999999999999 77 4 467888877 46778887766 78999999999
Q ss_pred cccccccccccCCCCCCCCCCCccCCCCcccchHHHHHHhhcCCcEEEEecceeeEEE-EeC----CEEEEECCHHHHHH
Q 037639 258 FPFFGHSLQLANANNHGFWAPTSGVVNGGTMSYKEIRQFIMSTNATKVFNATVVSDYC-YSG----TTWIGYDDTQSVNT 332 (361)
Q Consensus 258 lp~yG~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~d~~~~~~y~-~~~----~~~i~y~d~~S~~~ 332 (361)
||+||+.|++.++. .+..+.++|.++|+++++.++...||+.++++|. |.+ .+||+|||++|++.
T Consensus 215 ip~YG~~w~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~y~~~~g~~~~v~y~d~~Si~~ 284 (313)
T cd02874 215 IPLYGYDWTLPYKK----------GGKASTISPQQAINLAKRYGAEIQYDEEAQSPFFRYVDEQGRRHEVWFEDARSLQA 284 (313)
T ss_pred ecccccccccCCCC----------CcCccccCHHHHHHHHHHcCCCeEECcccCCCcEEEEeCCCCEEEEEeCcHHHHHH
Confidence 99999999875411 1134678999999999889999999999999864 432 36999999999999
Q ss_pred HHHHHHHcCCceEEEeeecCCCCc
Q 037639 333 KVKYAKDNGLLGYFAWQISQDDNW 356 (361)
Q Consensus 333 K~~~~~~~gl~Gv~iW~l~~Dd~~ 356 (361)
|+++++++||||+++|+|++||+.
T Consensus 285 K~~~~~~~~lgGv~iW~lg~dD~~ 308 (313)
T cd02874 285 KFELAKEYGLRGVSYWRLGLEDPQ 308 (313)
T ss_pred HHHHHHHcCCCeEEEEECCCCCcc
Confidence 999999999999999999999863
No 13
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=100.00 E-value=7.3e-48 Score=353.24 Aligned_cols=288 Identities=16% Similarity=0.204 Sum_probs=226.5
Q ss_pred EEEEeCCCCCCC--CCCCCCCCCcEEEEEEEEeeCCCcEEEeCCcchHHHHHHHHHHHhhCCCceEEEEEcCCCCCchhH
Q 037639 29 KAAYWFSGSNFP--VADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLSIGGGNASKESF 106 (361)
Q Consensus 29 ~~~y~~~~~~~~--~~~~~~~~~thii~~~~~v~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~ 106 (361)
++|||.++.... ........+|||++.|+.+...++.+..... + ....++..+|.++|.++++.+++|++.+++.|
T Consensus 2 ~l~~~~~w~~~s~~sl~~~~~~l~~vsP~W~~~~~~~g~l~~~~d-~-~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~~~ 79 (298)
T cd06549 2 ALAFYTPWDDASFASLKRHAPRLDWLVPEWLNLTGPEGRIDVFVD-P-QGVAIIAAAKAHPKVLPLVQNISGGAWDGKNI 79 (298)
T ss_pred eeEEEecCChhhHHHHHHhhccCCEEeceeEEEecCCCceeccCC-h-HHHHHHHHHHcCCceeEEEEecCCCCCCHHHH
Confidence 678888654433 2333457899999999999854446654322 2 22334556777778889999998876656789
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCccchhhHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecccccc
Q 037639 107 AAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYF 186 (361)
Q Consensus 107 ~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~ 186 (361)
+.++++++.|++|++++++++++|+|||||||||++..+++++|+.||++||++|++.+ +.|++++|+.+
T Consensus 80 ~~~l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~~~d~~~~~~fl~eL~~~l~~~~-------~~lsv~v~~~~--- 149 (298)
T cd06549 80 ARLLADPSARAKFIANIAAYLERNQADGIVLDFEELPADDLPKYVAFLSELRRRLPAQG-------KQLTVTVPADE--- 149 (298)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHhCCCCEEEecCCCChhHHHHHHHHHHHHHHHhhhcC-------cEEEEEecCCC---
Confidence 99999999999999999999999999999999999988999999999999999999864 78999988653
Q ss_pred cCCCChhhHhccCCeEEeeeeccCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCceEEeccccccccc
Q 037639 187 GAINPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQSGLSPKKIVLGFPFFGHSLQ 266 (361)
Q Consensus 187 ~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~~~~spl~~~~~~~~~~~~~~~~~~~~g~~~~KivlGlp~yG~~~~ 266 (361)
..||++.+.+++|+|+||+||+| ++ + ..++|.+|. .+++..+++. ..|+|++||+||||+||++|+
T Consensus 150 -~~~d~~~l~~~~D~v~lMtYD~~-~~-~---~~~gp~a~~-------~~~~~~~~~~-~~~vp~~KlvlGip~YG~~w~ 215 (298)
T cd06549 150 -ADWNLKALARNADKLILMAYDEH-YQ-G---GAPGPIASQ-------DWFESNLAQA-VKKLPPEKLIVALGSYGYDWT 215 (298)
T ss_pred -CCCCHHHHHHhCCEEEEEEeccC-CC-C---CCCCCCCCh-------hhHHHHHHHH-HhCCCHHHEEEEecccCcccc
Confidence 34799999999999999999999 55 2 233343332 3456666654 467999999999999999997
Q ss_pred ccCCCCCCCCCCCccCCCCcccchHHHHHHhhcCCcEEEEecceeeE-EEEeC----CEEEEECCHHHHHHHHHHHHHcC
Q 037639 267 LANANNHGFWAPTSGVVNGGTMSYKEIRQFIMSTNATKVFNATVVSD-YCYSG----TTWIGYDDTQSVNTKVKYAKDNG 341 (361)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~d~~~~~~-y~~~~----~~~i~y~d~~S~~~K~~~~~~~g 341 (361)
+..+ ...++..+...++.+.+....||+....+ |.|.+ .++|||+|++|++.|+++++++|
T Consensus 216 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~h~Vw~~d~~Sl~~K~~~a~~~~ 281 (298)
T cd06549 216 KGGN--------------TKAISSEAAWLLAAHASAAVKFDDKASNATYFFYDDEGVSHEVWMLDAVTLFNQLKAVQRLG 281 (298)
T ss_pred CCCC--------------CcccCHHHHHHHHHHcCCcceecccccCCceEEEcCCCcEEEEEeccHHHHHHHHHHHHHcC
Confidence 6421 12355566666666677788898876555 55532 25899999999999999999999
Q ss_pred CceEEEeeecCCCCc
Q 037639 342 LLGYFAWQISQDDNW 356 (361)
Q Consensus 342 l~Gv~iW~l~~Dd~~ 356 (361)
|+|+++|+||+||+.
T Consensus 282 l~Gva~W~lg~ed~~ 296 (298)
T cd06549 282 PAGVALWRLGSEDPG 296 (298)
T ss_pred CCcEEEEeccCCCCC
Confidence 999999999999874
No 14
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=100.00 E-value=3.4e-47 Score=341.65 Aligned_cols=247 Identities=29% Similarity=0.452 Sum_probs=205.9
Q ss_pred EEEEeCCCCCCC--CCCCCCCCCcEEEEEEEEeeCCCcEEEeCCcchHHHHHHHHHHHhhCCCceEEEEEcCCCCCchhH
Q 037639 29 KAAYWFSGSNFP--VADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLSIGGGNASKESF 106 (361)
Q Consensus 29 ~~~y~~~~~~~~--~~~~~~~~~thii~~~~~v~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~ 106 (361)
|+|||+++.... ++++|..+||||+++|+.++++| ++...+. ...+..+++.+|++ ++||++||||+.. +.|
T Consensus 1 vigyy~~w~~~~~~~~~~~~~~lThv~~~f~~i~~~G-~l~~~~~-~~~~~~~~~~~~~~--~~kvl~sigg~~~--~~~ 74 (253)
T cd06545 1 VVGYLPNYDDLNALSPTIDFSKLTHINLAFANPDANG-TLNANPV-RSELNSVVNAAHAH--NVKILISLAGGSP--PEF 74 (253)
T ss_pred CEEEeCCcccccCCcccCChhhCCeEEEEEEEECCCC-eEEecCc-HHHHHHHHHHHHhC--CCEEEEEEcCCCC--Ccc
Confidence 589999766544 89999999999999999999877 7776543 23455666666654 8999999999864 447
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCccchhhHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecccccc
Q 037639 107 AAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYF 186 (361)
Q Consensus 107 ~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~ 186 (361)
..++.+++.|++|++++++++++|+|||||||||+|... +++|..|+++||++|++.+ ++||+++++....
T Consensus 75 ~~~~~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~-~~~~~~fv~~Lr~~l~~~~-------~~lt~av~~~~~~- 145 (253)
T cd06545 75 TAALNDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDVT-FGDYLVFIRALYAALKKEG-------KLLTAAVSSWNGG- 145 (253)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCcc-HhHHHHHHHHHHHHHhhcC-------cEEEEEccCcccc-
Confidence 779999999999999999999999999999999999765 7899999999999998753 7899988764321
Q ss_pred cCCCChhhHhccCCeEEeeeeccCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCC-CCCceEEecccccccc
Q 037639 187 GAINPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQSGL-SPKKIVLGFPFFGHSL 265 (361)
Q Consensus 187 ~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~~~~spl~~~~~~~~~~~~~~~~~~~~g~-~~~KivlGlp~yG~~~ 265 (361)
.+ ..++.+++|+|+||+||++ |+ |. ...+++++|+ .+++..+++|...|+ |++||+||+|+||++|
T Consensus 146 --~~-~~~~~~~vD~i~vMtYD~~-g~-~~-~~~~g~~a~~-------~~~~~~v~~~~~~g~ip~~KlvlGlp~YG~~w 212 (253)
T cd06545 146 --AV-SDSTLAYFDFINIMSYDAT-GP-WW-GDNPGQHSSY-------DDAVNDLNYWNERGLASKDKLVLGLPFYGYGF 212 (253)
T ss_pred --cc-cHHHHhhCCEEEEEcCcCC-CC-CC-CCCCCCCCch-------HhHHHHHHHHHHcCCCCHHHEEEEeCCccccc
Confidence 13 3567889999999999999 88 62 2356777776 467889999999998 9999999999999987
Q ss_pred cccCCCCCCCCCCCccCCCCcccchHHHHHHhhcCCcEEEEecceeeEEEEeCCEEEEECCHHHHHHHHHHHHHcCCceE
Q 037639 266 QLANANNHGFWAPTSGVVNGGTMSYKEIRQFIMSTNATKVFNATVVSDYCYSGTTWIGYDDTQSVNTKVKYAKDNGLLGY 345 (361)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~d~~~~~~y~~~~~~~i~y~d~~S~~~K~~~~~~~gl~Gv 345 (361)
. |+.+.+++.|+++++++ +||+
T Consensus 213 ~---------------------------------------------------------~~~~~~~~~~~~~~~~~-~gG~ 234 (253)
T cd06545 213 Y---------------------------------------------------------YNGIPTIRNKVAFAKQN-YGGV 234 (253)
T ss_pred c---------------------------------------------------------CCCHHHHHHHHHHHHHh-cCeE
Confidence 2 67778999999999999 9999
Q ss_pred EEeeecCCC--CcCcccC
Q 037639 346 FAWQISQDD--NWILSRE 361 (361)
Q Consensus 346 ~iW~l~~Dd--~~~l~~~ 361 (361)
|+|++++|. +.||+.|
T Consensus 235 ~~w~~~~d~~~~~~l~~~ 252 (253)
T cd06545 235 MIWELSQDASGENSLLNA 252 (253)
T ss_pred EEEeccCCCCCCcchhhc
Confidence 999999994 4588765
No 15
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=100.00 E-value=2.3e-36 Score=264.62 Aligned_cols=170 Identities=35% Similarity=0.515 Sum_probs=139.2
Q ss_pred EEEEeCCCCCCC---CCCCCCCCCcEEEEEEEEeeCCCcEEEeCCcchHHHHHHHHHHHhhCCCceEEEEEcCCCCCchh
Q 037639 29 KAAYWFSGSNFP---VADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLSIGGGNASKES 105 (361)
Q Consensus 29 ~~~y~~~~~~~~---~~~~~~~~~thii~~~~~v~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~ 105 (361)
++|||..+.... +..++.+.||||+++|+.+++++......+.........++.+++++|++||++||||+.. ...
T Consensus 1 vv~y~~~w~~~~~~~~~~~~~~~~thvi~~f~~v~~~~~~~~~~~~~~~~~~~~i~~l~~~~~g~kv~~sigg~~~-~~~ 79 (210)
T cd00598 1 VICYYDGWSSGRGPDPTDIPLSLCTHIIYAFAEISSDGSLNLFGDKSEEPLKGALEELASKKPGLKVLISIGGWTD-SSP 79 (210)
T ss_pred CEEEEccccccCCCChhhCCcccCCEEEEeeEEECCCCCEecccCcccHHHHHHHHHHHHhCCCCEEEEEEcCCCC-CCC
Confidence 479998654443 4788899999999999999987743321222223344455678888899999999999876 344
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCccc---hhhHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecc
Q 037639 106 FAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQ---MSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYS 182 (361)
Q Consensus 106 ~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~~~---~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a~~~~ 182 (361)
+ .++++++.|++|++++++++++|+|||||||||+|...+ +.+|+.|+++||++|++++ ++||+++++.
T Consensus 80 ~-~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~~~-------~~ls~a~~~~ 151 (210)
T cd00598 80 F-TLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGAAN-------YLLTIAVPAS 151 (210)
T ss_pred c-hhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhcccC-------cEEEEEecCC
Confidence 4 889999999999999999999999999999999998864 8999999999999998753 8999999987
Q ss_pred cccccCCCChhhHhccCCeEEeeee
Q 037639 183 ANYFGAINPTSAISNSLDWTNVMAY 207 (361)
Q Consensus 183 ~~~~~~~~~~~~l~~~vD~v~lm~y 207 (361)
+......|+++++.+++|+|++|+|
T Consensus 152 ~~~~~~~~~~~~l~~~vD~v~vm~Y 176 (210)
T cd00598 152 YFDLGYAYDVPAIGDYVDFVNVMTY 176 (210)
T ss_pred hHHhhccCCHHHHHhhCCEEEEeee
Confidence 6543334889999999999999998
No 16
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=100.00 E-value=8e-36 Score=270.81 Aligned_cols=243 Identities=22% Similarity=0.348 Sum_probs=195.9
Q ss_pred HHHhhCCCceEEEEEcCCC-----CCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCccchhhHHHHHHH
Q 037639 82 TVQQKNPAVKALLSIGGGN-----ASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLTE 156 (361)
Q Consensus 82 ~lk~~~~~~kvllsigg~~-----~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~~~~~~~~~~l~~ 156 (361)
..+.+ +++.++.+...+ ++.+.++.++.++..++++++++++.++.+|+.||.||+|+....|++.|..|+++
T Consensus 155 ~~~~~--~i~~~~~iSN~~~~~~~f~~ela~~lL~net~~~~~i~~ii~~l~~~Gyrgv~iDfE~v~~~DR~~yt~flR~ 232 (423)
T COG3858 155 IAQCR--KIKPVPGISNGTRPGANFGGELAQLLLNNETAKNRLINNIITLLDARGYRGVNIDFENVGPGDRELYTDFLRQ 232 (423)
T ss_pred hhhhc--ccceeEEEecCCccccccchHHHHHHHhcHHHHHHHHHHHHHHHHhcCcccEEechhhCCHHHHHHHHHHHHH
Confidence 34444 566665554332 33556799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEEeecccc-----cccCCCChhhHhccCCeEEeeeeccCCCCCCCCCCCCCCCCCCCCCC
Q 037639 157 WRSAVAAEARSSGKPALLLTAAVSYSAN-----YFGAINPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALFSPD 231 (361)
Q Consensus 157 l~~~l~~~~~~~~~~~~~ls~a~~~~~~-----~~~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~~~~spl~~~~ 231 (361)
+|.+|++.| +.+++|+++-.. .|...||+..+.+++|+|.+|+||.| .+ ...+|+.||.
T Consensus 233 ~r~~l~~~G-------~~~siAvaakt~~~~~G~W~~~~dy~a~Gkiad~v~lMtYd~h-~~----gG~PG~vA~i---- 296 (423)
T COG3858 233 VRDALHSGG-------YTVSIAVAAKTSDLQVGSWHGAYDYVALGKIADFVILMTYDWH-YS----GGPPGPVASI---- 296 (423)
T ss_pred HHHHhccCC-------eEEEEEecCCCCCCcCccccchhhhhhhceeeeEEEEEEeccC-cC----CCCCCcccCc----
Confidence 999999886 899999987432 35667899999999999999999999 44 2455666655
Q ss_pred CCCCcHHHHHHHHHHcCCCCCceEEecccccccccccCCCCCCCCCCCccCCCCcccchHHHHHHhhcCCcEEEEeccee
Q 037639 232 RSQVSGDSGIRAWIQSGLSPKKIVLGFPFFGHSLQLANANNHGFWAPTSGVVNGGTMSYKEIRQFIMSTNATKVFNATVV 311 (361)
Q Consensus 232 ~~~~~~~~~~~~~~~~g~~~~KivlGlp~yG~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~d~~~~ 311 (361)
-+++..+++.+.. +|++||+||+|+||++|.+.... .|.... .+++.+...+.+..+.++.||...+
T Consensus 297 ---~~vr~~ieya~T~-iP~~Kv~mGip~YGYDW~~~y~~--------~g~~~~-a~~~~~~i~ia~~y~A~Iq~D~~~q 363 (423)
T COG3858 297 ---GWVRKVIEYALTV-IPAEKVMMGIPLYGYDWTLPYDP--------LGYLAR-AISPDEAIDIANRYNATIQYDATSQ 363 (423)
T ss_pred ---hhHhhhhhhhhee-cchHHeEEccccccccccCCCCC--------Ccceee-ecCcchhhhhhcccCCccCcCcccc
Confidence 4677778777765 99999999999999999865411 111112 2566665555666778899999999
Q ss_pred eEEEE-e---C-CEEEEECCHHHHHHHHHHHHHcCCceEEEeeecCCCC
Q 037639 312 SDYCY-S---G-TTWIGYDDTQSVNTKVKYAKDNGLLGYFAWQISQDDN 355 (361)
Q Consensus 312 ~~y~~-~---~-~~~i~y~d~~S~~~K~~~~~~~gl~Gv~iW~l~~Dd~ 355 (361)
++|.| . + .++|||||.+|+..|.+++|++||.||++|.|+++|+
T Consensus 364 sp~F~y~D~eg~~h~VWfeD~~s~~~k~~lik~ygl~GVs~W~Lg~e~p 412 (423)
T COG3858 364 SPFFYYVDKEGRYHEVWFEDARSFQTKLDLIKEYGLRGVSYWVLGQEDP 412 (423)
T ss_pred CceEEEEcCCCceEEEEcCchHHHHHHHHHHHHcCCceEEEEEecCcch
Confidence 98665 2 2 3599999999999999999999999999999999974
No 17
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=100.00 E-value=1.9e-32 Score=244.76 Aligned_cols=196 Identities=20% Similarity=0.295 Sum_probs=144.9
Q ss_pred EEEEEeCCCC---C-----CCCCCCCCCCCcEEEEEEEEeeCCCcEEEeCCcc--hH---HHHHHHHHHHhhCCCceEEE
Q 037639 28 VKAAYWFSGS---N-----FPVADIDSILFTHLFCAFADLDSQNFQVTVSSEN--QA---IFSSFTRTVQQKNPAVKALL 94 (361)
Q Consensus 28 ~~~~y~~~~~---~-----~~~~~~~~~~~thii~~~~~v~~~~~~~~~~~~~--~~---~~~~~~~~lk~~~~~~kvll 94 (361)
+++|||..+. . +++..++..+||||+|+|+.++.+| ++.+.++. .. .+.+-++.+| ++++|||+
T Consensus 1 r~v~y~~~~~~~~~~~~~~~~~~~~~~~~~THvi~af~~i~~~G-~l~~~d~~~~~~~~~~~~~~i~~~~--~~g~KVll 77 (256)
T cd06546 1 RLVIYYQTTHPSNGDPISSLLLVTEKGIALTHLIVAALHINDDG-NIHLNDHPPDHPRFTTLWTELAILQ--SSGVKVMG 77 (256)
T ss_pred CEEEEEccEECCCCCcccccccccCCCCCCceEEEEEEEECCCC-eEEECCCCCCcchhhHHHHHHHHHH--hCCCEEEE
Confidence 4789998421 1 1223456789999999999999866 78776542 11 2222233454 46999999
Q ss_pred EEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCccchhhHHHHHHHHHHHHHHHHHhcCCCceE
Q 037639 95 SIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAEARSSGKPALL 174 (361)
Q Consensus 95 sigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ 174 (361)
|||||+. ..|+.++++++.|++|++++++++++|+|||||||||+|. +..+|..|+++||++++.. ++
T Consensus 78 SiGG~~~--~~fs~~a~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~--~~~~~~~ll~~Lr~~~~~~--------~~ 145 (256)
T cd06546 78 MLGGAAP--GSFSRLDDDDEDFERYYGQLRDMIRRRGLDGLDLDVEEPM--SLDGIIRLIDRLRSDFGPD--------FI 145 (256)
T ss_pred EECCCCC--CCcccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeecCC--CHhHHHHHHHHHHHHhCCC--------cE
Confidence 9999964 3488888899999999999999999999999999999984 4579999999999988643 88
Q ss_pred EEEEeecccc----cccCCCChhhHh----ccCCeEEeeeeccCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHH
Q 037639 175 LTAAVSYSAN----YFGAINPTSAIS----NSLDWTNVMAYDFFYNDDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQ 246 (361)
Q Consensus 175 ls~a~~~~~~----~~~~~~~~~~l~----~~vD~v~lm~yd~~~~~~~~~~~~~~~~spl~~~~~~~~~~~~~~~~~~~ 246 (361)
||+++++..- .....+++..+. .++||+++|.||.+ |. - . + ......|.+
T Consensus 146 lT~Ap~~~~~~~g~~~~~~~~~~~l~~~~~~~~Df~nvQfYn~~-g~-~---~----------------~-~~~~~~~~~ 203 (256)
T cd06546 146 ITLAPVASALTGGEANLSGFDYRELEQARGDKIDFYNAQFYNGF-GS-M---S----------------S-PSDYDAIVA 203 (256)
T ss_pred EEECCccccccCCcccccccCHHHHHHhhCCceeEEEEcCcCCC-CC-c---c----------------C-HHHHHHHHH
Confidence 9998765421 112345666665 49999999999876 44 1 0 0 122344666
Q ss_pred cCCCCCceEEeccc
Q 037639 247 SGLSPKKIVLGFPF 260 (361)
Q Consensus 247 ~g~~~~KivlGlp~ 260 (361)
.++|++||++|+|.
T Consensus 204 ~~~~~~Kv~iGlpa 217 (256)
T cd06546 204 QGWDPERIVIGLLT 217 (256)
T ss_pred cCCCcccEEEEEec
Confidence 68999999999996
No 18
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=100.00 E-value=1.4e-32 Score=243.98 Aligned_cols=202 Identities=15% Similarity=0.183 Sum_probs=140.5
Q ss_pred CCCCCCCCCCCC--CcEEEEEEEE-eeCC----CcEEEeCCcch-HHHHHHHHHHHhhCCCceEEEEEcCCCCCc-hhHH
Q 037639 37 SNFPVADIDSIL--FTHLFCAFAD-LDSQ----NFQVTVSSENQ-AIFSSFTRTVQQKNPAVKALLSIGGGNASK-ESFA 107 (361)
Q Consensus 37 ~~~~~~~~~~~~--~thii~~~~~-v~~~----~~~~~~~~~~~-~~~~~~~~~lk~~~~~~kvllsigg~~~~~-~~~~ 107 (361)
....++++|.+. ||||||+|+. .+.. ++......... ..+.+ +..+|+++|++|||+|||||+... ..+.
T Consensus 11 ~~~~~~dip~~~~~~thii~aFa~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lK~~~p~lKvllSiGG~~~~~~~~~~ 89 (253)
T cd06544 11 NGVTFSDVPINPKVEFHFILSFAIDYDTESNPTNGKFNPYWDTENLTPEA-VKSIKAQHPNVKVVISIGGRGVQNNPTPF 89 (253)
T ss_pred CCccccccCCCCCeeEEEEEEeeeecccccCCCCCccccccCccccCHHH-HHHHHHhCCCcEEEEEeCCCCCCCCcccc
Confidence 345789999888 9999999993 3221 22322221222 23344 447999999999999999997632 1222
Q ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCccchhhHHHHHHHHHHHHHHHHHhcCCCceEEEEEeeccccccc
Q 037639 108 AMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFG 187 (361)
Q Consensus 108 ~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~ 187 (361)
...+.+..|++|+++++++|++|||||||||||+|. .++.+|+.|+++||++|++++ .|++++.++.....
T Consensus 90 ~~~~~~~~~~~fv~S~~~~l~~~~fDGiDiDwE~~~-~d~~~f~~ll~~l~~~l~~~~--------~lt~a~vap~~~~~ 160 (253)
T cd06544 90 DPSNVDSWVSNAVSSLTSIIQTYNLDGIDIDYEHFP-ADPDTFVECIGQLITELKNNG--------VIKVASIAPSEDAE 160 (253)
T ss_pred CchhhhhHHHHHHHHHHHHHHHhCCCceeeecccCC-cCHHHHHHHHHHHHHHhhhcC--------CeEEEEecCCcccc
Confidence 233344556777999999999999999999999984 578999999999999998762 34444333222211
Q ss_pred CCCChhhHhccCCeEEeeeeccCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCceEEecccccccc
Q 037639 188 AINPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQSGLSPKKIVLGFPFFGHSL 265 (361)
Q Consensus 188 ~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~~~~spl~~~~~~~~~~~~~~~~~~~~g~~~~KivlGlp~yG~~~ 265 (361)
..+.++.+.+++|+|++|+||++ +. + .. . ++ ......++.|. .++|++||++|+|+++..|
T Consensus 161 ~~~y~~~~~~~~d~id~~~~qfy-~~-~--~~-------~-~~----~~~~~~~~~~~-~~~p~~Kv~lGl~a~~~~~ 221 (253)
T cd06544 161 QSHYLALYNAYGDYIDYVNYQFY-NY-G--VP-------T-TV----AKYVEFYDEVA-NNYPGKKVLASFSTDGEDG 221 (253)
T ss_pred ccccHHHHHHhhCceeEEEhhhh-CC-C--CC-------C-CH----HHHHHHHHHHH-hCCCcccEEEEEecCCCcc
Confidence 23458888999999999999999 65 3 11 0 11 11234455554 4599999999999999766
No 19
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=99.97 E-value=4.1e-30 Score=237.19 Aligned_cols=209 Identities=24% Similarity=0.358 Sum_probs=146.0
Q ss_pred cEEEEEeCCCCCC------CCCCCCCCCCcEEEEEEEEeeCCCc-EEEe------CCcchHHHHHHHHHHHhhCCCceEE
Q 037639 27 AVKAAYWFSGSNF------PVADIDSILFTHLFCAFADLDSQNF-QVTV------SSENQAIFSSFTRTVQQKNPAVKAL 93 (361)
Q Consensus 27 ~~~~~y~~~~~~~------~~~~~~~~~~thii~~~~~v~~~~~-~~~~------~~~~~~~~~~~~~~lk~~~~~~kvl 93 (361)
++++|||+.+... .++.+ .+.||||+++|+.+++++. .+.+ .......+.+.++.+|++ ++|||
T Consensus 1 k~~vgY~~~w~~~~~~~~~~~~~~-~~~yt~i~~AF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~q~~--G~KVl 77 (312)
T cd02871 1 KVLVGYWHNWDNGAGSGRQDLDDV-PSKYNVINVAFAEPTSDGGGEVTFNNGSSPGGYSPAEFKADIKALQAK--GKKVL 77 (312)
T ss_pred CeEEEecCcccCCCCCCCCCcccC-CCCCCEEEEcceeecCCCceeEeecccCCcccCChHHHHHHHHHHHHC--CCEEE
Confidence 4689999854332 23333 4899999999999987542 2221 122334566666677776 89999
Q ss_pred EEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCcc-----chhhHHHHHHHHHHHHHHHHHhc
Q 037639 94 LSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNA-----QMSDFGTLLTEWRSAVAAEARSS 168 (361)
Q Consensus 94 lsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~~-----~~~~~~~~l~~l~~~l~~~~~~~ 168 (361)
+||||+.. + ..+++++.|++|++++++++++|+|||||||||+|... ++.+|..+|++||+.++..
T Consensus 78 lSiGG~~~-~----~~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~~~~---- 148 (312)
T cd02871 78 ISIGGANG-H----VDLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLKDHYGPN---- 148 (312)
T ss_pred EEEeCCCC-c----cccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHHHHcCCC----
Confidence 99999864 2 23678899999999999999999999999999998653 6799999999999988643
Q ss_pred CCCceEEEEEeeccccc--------ccCCC--ChhhHhccCCeEEeeeeccCCCCCCCCCCCCCCCCCCCCCCCCCCcHH
Q 037639 169 GKPALLLTAAVSYSANY--------FGAIN--PTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALFSPDRSQVSGD 238 (361)
Q Consensus 169 ~~~~~~ls~a~~~~~~~--------~~~~~--~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~~~~spl~~~~~~~~~~~ 238 (361)
++||+++.++... ....| ....+.+++|+|++|.||.+ +. + +.....+.. ......
T Consensus 149 ----~~lT~AP~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~D~invqfYn~~-~~-~------~~~~~~~~~--~~~~~~ 214 (312)
T cd02871 149 ----FILTMAPETPYVQGGYAAYGGIWGAYLPLIDNLRDDLTWLNVQYYNSG-GM-G------GCDGQSYSQ--GTADFL 214 (312)
T ss_pred ----eEEEECCCcccccCcccccccCCcchhHHHHHhhhheeEEEEeeccCC-Cc-c------cccccCCcc--chhHHH
Confidence 8999997664221 01223 36778889999999999987 53 1 000000110 112223
Q ss_pred HHHHHHHHcC-----------CCCCceEEecccc
Q 037639 239 SGIRAWIQSG-----------LSPKKIVLGFPFF 261 (361)
Q Consensus 239 ~~~~~~~~~g-----------~~~~KivlGlp~y 261 (361)
.++..++..| +|++||++|+|+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~p~~Kv~iG~pa~ 248 (312)
T cd02871 215 VALADMLLTGFPIAGNDRFPPLPADKVVIGLPAS 248 (312)
T ss_pred HHHHHHHHcCCCccCCcccccCChhhEEEeccCC
Confidence 3333334444 8999999999984
No 20
>KOG2091 consensus Predicted member of glycosyl hydrolase family 18 [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.2e-28 Score=214.18 Aligned_cols=291 Identities=19% Similarity=0.265 Sum_probs=223.0
Q ss_pred cEEEEEeCC--CCCCCCCCCCCCCCcEEEEEEEEeeCCCcEEEeCCcchHHHHHHHHHHHhhCCCceEEEEEcCCCCCch
Q 037639 27 AVKAAYWFS--GSNFPVADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLSIGGGNASKE 104 (361)
Q Consensus 27 ~~~~~y~~~--~~~~~~~~~~~~~~thii~~~~~v~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~ 104 (361)
.-+.+|.++ ..+|.++.+-.++.|||.+.|+.+..+|..+.+..-. +.-..+++.+|+++++++++.-+==....+.
T Consensus 79 ~~vLayVTPWNs~Gydvakifaskft~iSPVW~ql~~qgs~~~v~G~h-did~gwiralRk~~~~l~ivPR~~fd~~~~~ 157 (392)
T KOG2091|consen 79 GTVLAYVTPWNSHGYDVAKIFASKFTYISPVWLQLKDQGSDVGVYGKH-DIDPGWIRALRKSGKDLHIVPRFYFDEFTSA 157 (392)
T ss_pred CceEEEecCcCccchhHHHHHhcccceecchheeehhcCcceEEeecc-cCChHHHHHHHHhCCCceeeceehhhhccch
Confidence 347899986 4568899999999999999999998777444443221 1223577789999999998854432223367
Q ss_pred hHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEee-ecCCCc-cchhhHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecc
Q 037639 105 SFAAMASQAASRKSFIDSSINLARSLNFHGLDID-WEYPDN-AQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYS 182 (361)
Q Consensus 105 ~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD-~e~~~~-~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a~~~~ 182 (361)
.+..++..++.|++..+.++++++++||||+.|+ |..... -+......+++.|-++++.+. +++.+.+|+.
T Consensus 158 d~ke~l~ke~l~ekv~~tlv~~ck~~~fdGlVlevwsq~a~~i~d~~al~~v~hl~k~Lhkq~-------l~~iLvvPp~ 230 (392)
T KOG2091|consen 158 DLKEFLVKEALREKVGQTLVNFCKKHGFDGLVLEVWSQLADVIADKDALELVEHLGKALHKQE-------LQAILVVPPV 230 (392)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHcCCCeeeHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-------eEEEEEeCCC
Confidence 8999999999999999999999999999999998 543322 122344566777777777653 6777777763
Q ss_pred cccc--cCC----CChhhHhccCCeEEeeeeccCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCceEE
Q 037639 183 ANYF--GAI----NPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQSGLSPKKIVL 256 (361)
Q Consensus 183 ~~~~--~~~----~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~~~~spl~~~~~~~~~~~~~~~~~~~~g~~~~Kivl 256 (361)
.... ... -+++.|.+.+|.+.+||||+. + ...+++++|+ .+++.+++.+.-..--+.||++
T Consensus 231 ~~~e~~~~~~ft~ee~~~L~~~~d~fsLmTYd~s-~-----~~~pg~nap~-------~wi~~~l~~l~~~s~~r~KiLl 297 (392)
T KOG2091|consen 231 IEEENGQLKFFTPEEFSKLVAVYDGFSLMTYDYS-L-----VQGPGPNAPL-------EWIRHCLHHLGGSSAKRPKILL 297 (392)
T ss_pred CcCCCCCcCcCCHHHHHHHHHhhhheeEEEeecc-c-----ccCCCCCCCH-------HHHHHHHHHhCCccccccceeE
Confidence 2211 111 167889999999999999998 3 4678899988 5788888875444345579999
Q ss_pred ecccccccccccCCCCCCCCCCCccCCCCcccchHHHHHHhhcCCcEEEEecceeeE-EEEe----CCEEEEECCHHHHH
Q 037639 257 GFPFFGHSLQLANANNHGFWAPTSGVVNGGTMSYKEIRQFIMSTNATKVFNATVVSD-YCYS----GTTWIGYDDTQSVN 331 (361)
Q Consensus 257 Glp~yG~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~d~~~~~~-y~~~----~~~~i~y~d~~S~~ 331 (361)
|+.|||.+|.+.+ ..+.|+-++..++++.......||+.+.+. +.|. ++..|.|++..|+.
T Consensus 298 GlNFYG~d~~~gd--------------g~~~IT~~rYL~lLk~~k~~~~~Dees~EH~f~~k~n~~gkhivfyPTL~Sl~ 363 (392)
T KOG2091|consen 298 GLNFYGNDFNLGD--------------GGEAITAKRYLQLLKGEKSVFKFDEESKEHFFEYKRNDDGKHIVFYPTLTSLE 363 (392)
T ss_pred eeeccccccccCC--------------CCCceeHHHHHHHHhccCcceeeccccchhheeeeccCCCceEEEecchHhHH
Confidence 9999999997421 135788889999999899999999999886 4553 35689999999999
Q ss_pred HHHHHHHHcCCceEEEeeecCC
Q 037639 332 TKVKYAKDNGLLGYFAWQISQD 353 (361)
Q Consensus 332 ~K~~~~~~~gl~Gv~iW~l~~D 353 (361)
.+++++++.|. ||+||++||-
T Consensus 364 ~Ri~lA~~~gv-gISIWe~GqG 384 (392)
T KOG2091|consen 364 LRIELARELGV-GISIWEYGQG 384 (392)
T ss_pred HHHHHHHHhCC-ceEeeeccCc
Confidence 99999999996 9999999986
No 21
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=99.93 E-value=5.4e-24 Score=191.75 Aligned_cols=201 Identities=23% Similarity=0.233 Sum_probs=136.9
Q ss_pred EEEEEeCCCC--CCCCCCCCCCCCcEEEEEEEEeeCCCc--EEEeCCcch-------HHHHHHHHHHHhhCCCceEEEEE
Q 037639 28 VKAAYWFSGS--NFPVADIDSILFTHLFCAFADLDSQNF--QVTVSSENQ-------AIFSSFTRTVQQKNPAVKALLSI 96 (361)
Q Consensus 28 ~~~~y~~~~~--~~~~~~~~~~~~thii~~~~~v~~~~~--~~~~~~~~~-------~~~~~~~~~lk~~~~~~kvllsi 96 (361)
.++.||.... ....+-++...++.|+++|+...+.++ .+.+.+.-. ..+.+.|+.++++ ++||||||
T Consensus 2 ~v~vyWGq~~~~~~L~~~C~~~~~dii~i~Fl~~~~~~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~~--G~KVlLSI 79 (280)
T cd02877 2 NIAVYWGQNSDEGSLREYCDTGNYDIVNISFLNVFGSGGTPGLNFAGHCGGSTYPNCPQLGADIKHCQSK--GKKVLLSI 79 (280)
T ss_pred CeEEECCCCCCCCCHHHHhCCCCccEEEEEeEcccCCCCCcccCccccCcccccccchhHHHHHHHHHHC--CCEEEEEc
Confidence 3688997322 222333455689999999998876532 233333211 2455666667665 99999999
Q ss_pred cCCCCCchhHHHHhcCHHHHHHHHHHHHHHHH------------cCCCcEEEeeecCCCccchhhHHHHHHHHHHHHHHH
Q 037639 97 GGGNASKESFAAMASQAASRKSFIDSSINLAR------------SLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAE 164 (361)
Q Consensus 97 gg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~------------~~~~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~~ 164 (361)
||++. +..| ++++.|++|+++|.+++. +++|||||||||+|.. .+|..|+++||+.++..
T Consensus 80 GG~~~-~~~~----~s~~~a~~Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D~E~~~~---~~~~~l~~~LR~~~~~~ 151 (280)
T cd02877 80 GGAGG-SYSL----SSDADAKDFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIEHGSP---ENYDALAKRLRSLFASD 151 (280)
T ss_pred cCCCC-CcCC----CCHHHHHHHHHHHHHHhCCccccccccccccccccceEEecccCCc---cCHHHHHHHHHHHhhcc
Confidence 99975 3333 688999999999988762 5679999999999865 78999999999999753
Q ss_pred HHhcCCCceEEEEEeecccccccCCCChhhHh-ccCCeEEeeeeccCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHH
Q 037639 165 ARSSGKPALLLTAAVSYSANYFGAINPTSAIS-NSLDWTNVMAYDFFYNDDRTGSRITGPPAALFSPDRSQVSGDSGIRA 243 (361)
Q Consensus 165 ~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~-~~vD~v~lm~yd~~~~~~~~~~~~~~~~spl~~~~~~~~~~~~~~~~ 243 (361)
. .++++||+|++++.. ..+....+. .++|+|++|.||.. +. ....+. .......++.
T Consensus 152 ~----~~~~~LTaAPq~~~~---d~~~~~~i~~~~~D~i~vqfYn~~-~c----~~~~~~----------~~~~~~~~~~ 209 (280)
T cd02877 152 P----SKKYYLTAAPQCPYP---DASLGDAIATGLFDFIFVQFYNNP-CC----SYASGN----------ASGFNFNWDT 209 (280)
T ss_pred c----CCceEEEeccccCCc---chhHHHHHccCccCEEEEEEecCc-cc----cccccc----------cchhhhHHHH
Confidence 2 123899999887432 123345555 49999999999876 32 111000 1122345566
Q ss_pred HHHcCCCC---CceEEecccc
Q 037639 244 WIQSGLSP---KKIVLGFPFF 261 (361)
Q Consensus 244 ~~~~g~~~---~KivlGlp~y 261 (361)
|... ++. .||+||+|..
T Consensus 210 w~~~-~~~~~~~kv~lGlpas 229 (280)
T cd02877 210 WTSW-AKATSNAKVFLGLPAS 229 (280)
T ss_pred HHHh-cccCCCceEEEecccC
Confidence 6654 555 8999999975
No 22
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=99.92 E-value=1.4e-24 Score=195.59 Aligned_cols=195 Identities=18% Similarity=0.162 Sum_probs=138.9
Q ss_pred cEEEEEeCCCCC------CCCCCCCCCCCcEEEEEEEEeeCCCcEEEeCCcchHHHHHHHHHHHhhCCCceEEEEEcCCC
Q 037639 27 AVKAAYWFSGSN------FPVADIDSILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLSIGGGN 100 (361)
Q Consensus 27 ~~~~~y~~~~~~------~~~~~~~~~~~thii~~~~~v~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~ 100 (361)
++..|||..+.. ..+.++| +.+++|+++...++.++... .........+.++.+|++ |+||++||||+.
T Consensus 1 ~~~~~y~~~~~~~~~~~~~~l~~~p-ds~D~v~lf~~~~~~~~~~~--~~~~~~~~~~~i~~l~~k--G~KVl~sigg~~ 75 (255)
T cd06542 1 PISFGYFEVWDDKGASLQESLLNLP-DSVDMVSLFAANINLDAATA--VQFLLTNKETYIRPLQAK--GTKVLLSILGNH 75 (255)
T ss_pred CeEEEEEEecCCcCcccccccccCC-CcceEEEEcccccCcccccc--hhhhhHHHHHHHHHHhhC--CCEEEEEECCCC
Confidence 467889975543 4566666 68999998554444322100 011223345556566666 999999999987
Q ss_pred CCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc-------cchhhHHHHHHHHHHHHHHHHHhcCCCce
Q 037639 101 ASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN-------AQMSDFGTLLTEWRSAVAAEARSSGKPAL 173 (361)
Q Consensus 101 ~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~-------~~~~~~~~~l~~l~~~l~~~~~~~~~~~~ 173 (361)
. ...| ....+++.|++|++++++++++|||||||||||++.. .+.++|..|+++||+.++.. ++
T Consensus 76 ~-~~~~-~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~~~~~~-------~k 146 (255)
T cd06542 76 L-GAGF-ANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKYMGPT-------DK 146 (255)
T ss_pred C-CCCc-cccCCHHHHHHHHHHHHHHHHHhCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHHHhCcC-------Cc
Confidence 5 3444 3356788999999999999999999999999999865 36789999999999999752 27
Q ss_pred EEEEEeecccccccCCCChhhHhccCCeEEeeeeccCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCc
Q 037639 174 LLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQSGLSPKK 253 (361)
Q Consensus 174 ~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~~~~spl~~~~~~~~~~~~~~~~~~~~g~~~~K 253 (361)
+|+++.++..... +.+++.+++||+++|+|+.. +. .... . ......|+|++|
T Consensus 147 llt~~~~~~~~~~----~~~~~~~~vDyv~~~~y~~~-~~------~~~~---~--------------~~~~~~g~~~~k 198 (255)
T cd06542 147 LLTIDGYGQALSN----DGEEVSPYVDYVIYQYYGSS-SS------STQR---N--------------WNTNSPKIPPEK 198 (255)
T ss_pred EEEEEecCCchhc----CHHHHHHhCCEEEeeccCCC-Cc------cCCc---c--------------cccccCCCCHHH
Confidence 8999877543211 67899999999999999765 32 1100 0 011236799999
Q ss_pred eEEecccccc
Q 037639 254 IVLGFPFFGH 263 (361)
Q Consensus 254 ivlGlp~yG~ 263 (361)
+++|+++++.
T Consensus 199 ~i~~~~~~~~ 208 (255)
T cd06542 199 MVYTESFEEE 208 (255)
T ss_pred ceeeeeeecc
Confidence 9999999864
No 23
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=99.86 E-value=5e-21 Score=173.75 Aligned_cols=148 Identities=13% Similarity=0.098 Sum_probs=113.6
Q ss_pred CCCCcEEEEEEEEeeCCCcEEEeCCc---c-hHHHHHHHHHHHhhCCCceEEEEEcCCCCCchhHHHHhcCHHHHHHHHH
Q 037639 46 SILFTHLFCAFADLDSQNFQVTVSSE---N-QAIFSSFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFID 121 (361)
Q Consensus 46 ~~~~thii~~~~~v~~~~~~~~~~~~---~-~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~ 121 (361)
...|+||+++|+..... +++..... . ...+.+.++.+|++ ++||++|+||+.. ..++ .+...|++|++
T Consensus 23 ~~g~~~v~lAFi~~~~~-~~~~w~g~~~~~~~~~~~~~i~~lk~~--G~kViiS~GG~~g--~~~~---~~~~~~~~~~~ 94 (294)
T cd06543 23 ATGVKAFTLAFIVASGG-CKPAWGGSYPLDQGGWIKSDIAALRAA--GGDVIVSFGGASG--TPLA---TSCTSADQLAA 94 (294)
T ss_pred HcCCCEEEEEEEEcCCC-CcccCCCCCCcccchhHHHHHHHHHHc--CCeEEEEecCCCC--Cccc---cCcccHHHHHH
Confidence 36899999999988743 35555432 1 23445556688888 6999999999975 2233 36789999999
Q ss_pred HHHHHHHcCCCcEEEeeecCCCccch---hhHHHHHHHHHHHHHHHHHhcCCCceEEEEEeeccccc-ccCCCChhhHhc
Q 037639 122 SSINLARSLNFHGLDIDWEYPDNAQM---SDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANY-FGAINPTSAISN 197 (361)
Q Consensus 122 ~l~~~l~~~~~DGidiD~e~~~~~~~---~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~-~~~~~~~~~l~~ 197 (361)
++.+++.+|+|||||||||++...++ +++..+|++|+++++ ++.|++++|..+.. ...++++.....
T Consensus 95 a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p---------~l~vs~Tlp~~p~gl~~~g~~~l~~a~ 165 (294)
T cd06543 95 AYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKEYP---------DLKISFTLPVLPTGLTPDGLNVLEAAA 165 (294)
T ss_pred HHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHHCC---------CcEEEEecCCCCCCCChhHHHHHHHHH
Confidence 99999999999999999999987665 778888888877653 27899998865542 224456677777
Q ss_pred ----cCCeEEeeeeccC
Q 037639 198 ----SLDWTNVMAYDFF 210 (361)
Q Consensus 198 ----~vD~v~lm~yd~~ 210 (361)
.+|+||||+||++
T Consensus 166 ~~Gv~~d~VNiMtmDyg 182 (294)
T cd06543 166 ANGVDLDTVNIMTMDYG 182 (294)
T ss_pred HcCCCcceeeeeeecCC
Confidence 8999999999998
No 24
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=99.79 E-value=7.4e-18 Score=143.02 Aligned_cols=213 Identities=18% Similarity=0.252 Sum_probs=136.7
Q ss_pred CCCcEEEEEeCCCC--------CCCCCCCCC----CCCcEEEEEEEEeeCCCcEE-EeCCc--chHHHHHHHHHHHhhCC
Q 037639 24 GQNAVKAAYWFSGS--------NFPVADIDS----ILFTHLFCAFADLDSQNFQV-TVSSE--NQAIFSSFTRTVQQKNP 88 (361)
Q Consensus 24 ~~~~~~~~y~~~~~--------~~~~~~~~~----~~~thii~~~~~v~~~~~~~-~~~~~--~~~~~~~~~~~lk~~~~ 88 (361)
.+.++.+|||+.+. .-...++.. ..++.+-.+|+.-. | ++ .+.+. .+..|+.-+..|..+
T Consensus 23 ~~~KvLvGyWHnw~sgaaDgyq~gs~adial~d~~~~ynvv~V~Fmk~~--g-~iptf~P~~~~daeFr~~v~aLnae-- 97 (332)
T COG3469 23 ISNKVLVGYWHNWKSGAADGYQQGSSADIALADTPRNYNVVTVSFMKGA--G-DIPTFKPYNDPDAEFRAQVGALNAE-- 97 (332)
T ss_pred cccceEEEeeecccccccccccccceeeeEeccCCcccceEEEEEeecC--C-CCcccCcCCCCHHHHHHHHHHhhcc--
Confidence 44569999999321 122333322 35667777776544 2 22 22222 335566666566666
Q ss_pred CceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc---cchhhHHHHHHHHHHHHHHHH
Q 037639 89 AVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN---AQMSDFGTLLTEWRSAVAAEA 165 (361)
Q Consensus 89 ~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~---~~~~~~~~~l~~l~~~l~~~~ 165 (361)
+.-|+||+||... .+-.....-+.|+.+|++++++|||||+|||.|+... .......+.+|.+|+..+..|
T Consensus 98 GkavllsLGGAdg------hIeL~~~qE~~fv~eiirlietyGFDGLDiDLEq~ai~~~dnq~v~p~alk~vk~hyk~~G 171 (332)
T COG3469 98 GKAVLLSLGGADG------HIELKAGQEQAFVNEIIRLIETYGFDGLDIDLEQSAILAADNQTVIPAALKAVKDHYKNQG 171 (332)
T ss_pred CcEEEEEccCccc------eEEeccchHHHHHHHHHHHHHHhCCCccccchhhhhhhhcCCeeehHHHHHHHHHHHHhcC
Confidence 8889999999854 2222335578999999999999999999999998765 444578889999998888776
Q ss_pred HhcCCCceEEEEEeecccccccCCC--ChhhHhccCCeEEeeeeccCCCCC-CCCCCCCCCCCCCCCCCCCCCcHHHHHH
Q 037639 166 RSSGKPALLLTAAVSYSANYFGAIN--PTSAISNSLDWTNVMAYDFFYNDD-RTGSRITGPPAALFSPDRSQVSGDSGIR 242 (361)
Q Consensus 166 ~~~~~~~~~ls~a~~~~~~~~~~~~--~~~~l~~~vD~v~lm~yd~~~~~~-~~~~~~~~~~spl~~~~~~~~~~~~~~~ 242 (361)
+. +.||+++..|.-.....| -+.++..+.|+|+++-|+.. |.. | .+...++... ...-+.+..-
T Consensus 172 k~-----f~itMAPEfPYl~~~gaY~pyin~l~~~yD~i~pQlYNqG-Gdg~w----~~~~nawi~q---~nd~~kesfl 238 (332)
T COG3469 172 KN-----FFITMAPEFPYLQGWGAYIPYINELRDYYDFIAPQLYNQG-GDGNW----VTESNAWIAQ---NNDMVKESFL 238 (332)
T ss_pred Cc-----eEEEecCCCceecCCcccchHHHHHhhHHhhhhHHHhcCC-CCCCC----cCcccccccc---ccHHHHHhHH
Confidence 43 999999776533322223 36788999999999999887 541 3 2222233211 1111222222
Q ss_pred HHHH----------cCCCCCceEEeccc
Q 037639 243 AWIQ----------SGLSPKKIVLGFPF 260 (361)
Q Consensus 243 ~~~~----------~g~~~~KivlGlp~ 260 (361)
+++. ..+|.+|+++|||.
T Consensus 239 y~~~~slanGtr~f~~ipa~k~aiGLPs 266 (332)
T COG3469 239 YYLTFSLANGTRGFEKIPADKFAIGLPS 266 (332)
T ss_pred HHhhhhhhcCcccceecccceeEEecCC
Confidence 2221 23799999999997
No 25
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=99.64 E-value=9e-15 Score=131.02 Aligned_cols=229 Identities=17% Similarity=0.156 Sum_probs=143.7
Q ss_pred CCCcchhHHHHHHHHHhhhhcccCCCcEEEEEeCCC----CCCCCCCCCCCCCcEEEEEEEEeeCCCcEEEe--CCc---
Q 037639 1 MAPKILPVLLSFTLLLLQLHSSAGQNAVKAAYWFSG----SNFPVADIDSILFTHLFCAFADLDSQNFQVTV--SSE--- 71 (361)
Q Consensus 1 M~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~y~~~~----~~~~~~~~~~~~~thii~~~~~v~~~~~~~~~--~~~--- 71 (361)
|+.+..+++++.+++++.....-..+..+++||..+ ......-+....+..|+++|+.-.+.++.+.+ .+.
T Consensus 1 M~L~~~illF~~F~~l~lsk~~~~~~t~IA~YWGQN~aG~q~~Ls~yC~~~~yd~~~lsFL~~F~~~~Tp~LNfAn~Csd 80 (568)
T KOG4701|consen 1 MRLISSLLLFVYFARLALSKLNLTNQTAIAGYWGQNLAGDQKRLSSYCQNTTYDAIILSFLIDFNVDGTPVLNFANLCSD 80 (568)
T ss_pred CcHHHHHHHHHHHHHccccccccccccceEEEeccccccchhhhhhhhccCccceeeeehhhhcCCCCCceeehhcccCc
Confidence 554444444444444444445556778899999743 22223334456789999999855443333332 221
Q ss_pred -c------hHHHHHHHHHHHhhCCCceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcC-------C---CcE
Q 037639 72 -N------QAIFSSFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSL-------N---FHG 134 (361)
Q Consensus 72 -~------~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~-------~---~DG 134 (361)
. =..+..-++.++.+ |+||||++||..++ ..+.+.+..+.|++.+.+..-.- | +||
T Consensus 81 ~~~~~l~~CTqi~~di~~CQS~--GiKVlLSLGG~~Gn-----Ys~~~d~dA~~fA~~LWn~Fg~G~~S~RPfg~AVvDG 153 (568)
T KOG4701|consen 81 SDTFSLKKCTQIETDIQVCQSN--GIKVLLSLGGYNGN-----YSLNNDDDATNFAFQLWNIFGSGEDSYRPFGKAVVDG 153 (568)
T ss_pred cccccccccchhhhHHHHHHhc--CeEEEEeccCcccc-----eeeccchhHHHHHHHHHHHhcCCccccCcccchhccc
Confidence 1 12345556667777 99999999998652 23567788899999999887442 1 799
Q ss_pred EEeeecCCCccchhhHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecccccccCCCChhhHhccCCeEEeeeeccCCCCC
Q 037639 135 LDIDWEYPDNAQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFFYNDD 214 (361)
Q Consensus 135 idiD~e~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~lm~yd~~~~~~ 214 (361)
+|||+|.. ....|.+|-+.||+.|...+|. +.|+.++.||......+- ..-.+-+||+.|+.|+..
T Consensus 154 fDF~IE~g---~~~~ysaLA~~L~~~Fa~~~r~-----yYLsaAPQCP~PD~~~G~--aL~~~~fDf~~IQFYNN~---- 219 (568)
T KOG4701|consen 154 FDFEIEKG---TNTAYSALAKRLLEIFASDPRR-----YYLSAAPQCPVPDHTLGK--ALSENSFDFLSIQFYNNS---- 219 (568)
T ss_pred eeeeeecC---CcchHHHHHHHHHHHHccCCce-----EEeccCCCCCCCchhhhh--hhhccccceEEEEeecCC----
Confidence 99999964 4467888889999988876432 889999988754322221 111556999999999653
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCc---eEEeccccc
Q 037639 215 RTGSRITGPPAALFSPDRSQVSGDSGIRAWIQSGLSPKK---IVLGFPFFG 262 (361)
Q Consensus 215 ~~~~~~~~~~spl~~~~~~~~~~~~~~~~~~~~g~~~~K---ivlGlp~yG 262 (361)
. +..-+.. .+.+.+..++ |... +.++| ++||||...
T Consensus 220 ~---------CS~SsG~-~Q~~fDsW~~-ya~~-~a~nKn~~lFLGLPg~~ 258 (568)
T KOG4701|consen 220 T---------CSGSSGS-RQSTFDAWVE-YAED-SAYNKNTSLFLGLPGHQ 258 (568)
T ss_pred C---------cccccCc-ccccHHHHHH-HHhh-hcccccceEEeeccCCc
Confidence 1 1110010 1233444444 3333 66777 999999743
No 26
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=98.51 E-value=1.4e-06 Score=81.08 Aligned_cols=156 Identities=12% Similarity=0.171 Sum_probs=105.1
Q ss_pred HHHHHHhhCCCceEEEEEcC-CCCCchhHHHHhcC-HHHHHHHHHHHHHHHHcCCCcEEEeeecCCC--ccchhhHHHHH
Q 037639 79 FTRTVQQKNPAVKALLSIGG-GNASKESFAAMASQ-AASRKSFIDSSINLARSLNFHGLDIDWEYPD--NAQMSDFGTLL 154 (361)
Q Consensus 79 ~~~~lk~~~~~~kvllsigg-~~~~~~~~~~~~~~-~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~--~~~~~~~~~~l 154 (361)
.++.+|+. ||||+-.|-- +....+....++.+ ++.+.++++.|+++++.|||||+.||+|... .++.+.+..|+
T Consensus 51 ~idaAHkn--GV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~~~~~~~~~l~~F~ 128 (339)
T cd06547 51 WINAAHRN--GVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDGWLINIETELGDAEKAKRLIAFL 128 (339)
T ss_pred HHHHHHhc--CCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHHHHHHhCCCceEeeeeccCCcHHHHHHHHHHH
Confidence 55566666 9999977742 22224567888888 9999999999999999999999999999887 48899999999
Q ss_pred HHHHHHHHHHHHhcCCCceEEE--EEeeccccc-ccCC---CChhhHhccCCeEEeeeeccCCCCCCCCCCCCCCCCCCC
Q 037639 155 TEWRSAVAAEARSSGKPALLLT--AAVSYSANY-FGAI---NPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALF 228 (361)
Q Consensus 155 ~~l~~~l~~~~~~~~~~~~~ls--~a~~~~~~~-~~~~---~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~~~~spl~ 228 (361)
++|+++++++. ++..+. =++-..... +... .+.+- -+.+|-+ +. ++. |
T Consensus 129 ~~L~~~~~~~~-----~~~~v~WYDs~t~~G~l~wQn~Ln~~N~~f-f~~~D~~-Fl--NY~----W------------- 182 (339)
T cd06547 129 RYLKAKLHENV-----PGSLVIWYDSMTEDGKLSWQNELNSKNKPF-FDVCDGI-FL--NYW----W------------- 182 (339)
T ss_pred HHHHHHHhhcC-----CCcEEEEEecCCCCCccchhhhhhHHHHHH-Hhhhcce-eE--ecC----C-------------
Confidence 99999999752 112221 111111110 1111 12222 2556644 12 233 5
Q ss_pred CCCCCCCcHHHHHHHHHHcCCCCCceEEeccccccccc
Q 037639 229 SPDRSQVSGDSGIRAWIQSGLSPKKIVLGFPFFGHSLQ 266 (361)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~g~~~~KivlGlp~yG~~~~ 266 (361)
....++..++.....|..+.+|.+|+=..|+...
T Consensus 183 ----~~~~l~~s~~~a~~~g~~~~dvy~GiDv~grg~~ 216 (339)
T cd06547 183 ----TEESLERSVQLAEGLGRSPYDVYVGVDVWGRGTK 216 (339)
T ss_pred ----CcchHHHHHHHHHHcCCCHhHEEEEEEEEcCCcc
Confidence 1223456666677788999999999999988754
No 27
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.09 E-value=4.5e-05 Score=70.48 Aligned_cols=129 Identities=12% Similarity=0.174 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHHHHHcCCCcEEEee-ecCCCc------------------------cc-------hhhHHHHHHHHHH
Q 037639 112 QAASRKSFIDSSINLARSLNFHGLDID-WEYPDN------------------------AQ-------MSDFGTLLTEWRS 159 (361)
Q Consensus 112 ~~~~r~~f~~~l~~~l~~~~~DGidiD-~e~~~~------------------------~~-------~~~~~~~l~~l~~ 159 (361)
.++.|+-.++-+.+++++|.+|||.|| +-+|.. .+ +++...|+++++.
T Consensus 135 ~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~ 214 (311)
T PF02638_consen 135 HPEVRDYIIDIVKEIVKNYDVDGIHLDDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYD 214 (311)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCeEEecccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHH
Confidence 567777788888888999999999999 455421 23 5678899999999
Q ss_pred HHHHHHHhcCCCceEEEEEeeccc--ccccCCCChhhH--hccCCeEEeeeeccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 037639 160 AVAAEARSSGKPALLLTAAVSYSA--NYFGAINPTSAI--SNSLDWTNVMAYDFFYNDDRTGSRITGPPAALFSPDRSQV 235 (361)
Q Consensus 160 ~l~~~~~~~~~~~~~ls~a~~~~~--~~~~~~~~~~~l--~~~vD~v~lm~yd~~~~~~~~~~~~~~~~spl~~~~~~~~ 235 (361)
++++. ++...+++++.+.. .+....-|...- ..++|++..|.|-.. ..... .
T Consensus 215 ~ik~~-----kP~v~~sisp~g~~~~~y~~~~qD~~~W~~~G~iD~i~Pq~Y~~~---------~~~~~----------~ 270 (311)
T PF02638_consen 215 AIKAI-----KPWVKFSISPFGIWNSAYDDYYQDWRNWLKEGYIDYIVPQIYWSD---------FSHFT----------A 270 (311)
T ss_pred HHHHh-----CCCCeEEEEeecchhhhhhheeccHHHHHhcCCccEEEeeecccc---------cchhH----------H
Confidence 99887 34477877765332 111111233332 478999999999431 11111 2
Q ss_pred cHHHHHHHHHHcCCC-CCceEEeccccccc
Q 037639 236 SGDSGIRAWIQSGLS-PKKIVLGFPFFGHS 264 (361)
Q Consensus 236 ~~~~~~~~~~~~g~~-~~KivlGlp~yG~~ 264 (361)
.++..+..|.+.-.+ .-+|.+|+.+|-..
T Consensus 271 ~~~~~~~~w~~~~~~~~v~ly~G~~~y~~~ 300 (311)
T PF02638_consen 271 PYEQLAKWWAKQVKPTNVHLYIGLALYKVG 300 (311)
T ss_pred HHHHHHHHHHHhhcCCCceEEEccCcCCCC
Confidence 346677777765333 34899999998543
No 28
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=97.95 E-value=3.4e-05 Score=71.00 Aligned_cols=155 Identities=16% Similarity=0.184 Sum_probs=92.9
Q ss_pred HHHHHHHhhCCCceEEEEEc-CCCCCchhHHHHhc-CHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc--cchhhHHHH
Q 037639 78 SFTRTVQQKNPAVKALLSIG-GGNASKESFAAMAS-QAASRKSFIDSSINLARSLNFHGLDIDWEYPDN--AQMSDFGTL 153 (361)
Q Consensus 78 ~~~~~lk~~~~~~kvllsig-g~~~~~~~~~~~~~-~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~--~~~~~~~~~ 153 (361)
..++.+|+. |||||-.|- .++...+.+..++. +++....+++.|+++++.|||||.-|++|.+.. .....+..|
T Consensus 46 ~widaAHrn--GV~vLGTiife~~~~~~~~~~ll~~~~~g~~~~A~kLi~ia~~yGFDGw~iN~E~~~~~~~~~~~l~~F 123 (311)
T PF03644_consen 46 GWIDAAHRN--GVKVLGTIIFEWGGGAEWCEELLEKDEDGSFPYADKLIEIAKYYGFDGWLINIETPLSGPEDAENLIDF 123 (311)
T ss_dssp HHHHHHHHT--T--EEEEEEEEEE--HHHHHHHT---TTS--HHHHHHHHHHHHHT--EEEEEEEESSTTGGGHHHHHHH
T ss_pred hhHHHHHhc--CceEEEEEEecCCchHHHHHHHHcCCcccccHHHHHHHHHHHHcCCCceEEEecccCCchhHHHHHHHH
Confidence 356667766 999984442 22222467788888 888889999999999999999999999998866 688999999
Q ss_pred HHHHHHHHHHHHHhcCCCceEEE--EEeeccccc-ccCCCCh--hhHhccCCeEEeeeeccCCCCCCCCCCCCCCCCCCC
Q 037639 154 LTEWRSAVAAEARSSGKPALLLT--AAVSYSANY-FGAINPT--SAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALF 228 (361)
Q Consensus 154 l~~l~~~l~~~~~~~~~~~~~ls--~a~~~~~~~-~~~~~~~--~~l~~~vD~v~lm~yd~~~~~~~~~~~~~~~~spl~ 228 (361)
+++|++..++ .. +..|. =++...... +.....- ....+.+|-|.+ ++. |
T Consensus 124 ~~~l~~~~~~-~~-----~~~v~WYDs~t~~G~l~~qn~Ln~~N~~f~~~~d~iFl---NY~----W------------- 177 (311)
T PF03644_consen 124 LKYLRKEAHE-NP-----GSEVIWYDSVTNSGRLSWQNELNDKNKPFFDVCDGIFL---NYN----W------------- 177 (311)
T ss_dssp HHHHHHHHHH-T------T-EEEEES-B-SSSSB---SSS-TTTGGGBES-SEEEE----S-------------------
T ss_pred HHHHHHHhhc-CC-----CcEEEEeecCCcCCccchHHHHHhhCcchhhhcceeeE---ecC----C-------------
Confidence 9999999887 21 12222 111111110 1111100 111344554421 223 4
Q ss_pred CCCCCCCcHHHHHHHHHHcCCCCCceEEeccccccc
Q 037639 229 SPDRSQVSGDSGIRAWIQSGLSPKKIVLGFPFFGHS 264 (361)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~g~~~~KivlGlp~yG~~ 264 (361)
+...++..++...+.+.++.+|.+|+=..|+.
T Consensus 178 ----~~~~l~~s~~~A~~~~~~~~~vy~GiDv~grg 209 (311)
T PF03644_consen 178 ----NPDSLESSVANAKSRGRDPYDVYAGIDVFGRG 209 (311)
T ss_dssp ----SHHHHHHHHHHHHHHTS-GGGEEEEEEHHHHT
T ss_pred ----CcccHHHHHHHHHHcCCCHHHEEEEEEEEcCC
Confidence 33456788888888999999999999999988
No 29
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=97.95 E-value=0.0015 Score=59.99 Aligned_cols=90 Identities=17% Similarity=0.248 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEeee-cCCCc-----------c----chhhHHHHHHHHHHHHHHHHHhcCCCceEEEE
Q 037639 114 ASRKSFIDSSINLARSLNFHGLDIDW-EYPDN-----------A----QMSDFGTLLTEWRSAVAAEARSSGKPALLLTA 177 (361)
Q Consensus 114 ~~r~~f~~~l~~~l~~~~~DGidiD~-e~~~~-----------~----~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~ 177 (361)
+...+..-.|+..+.+.|||.|.||+ .+|.. . -.+.+..||+..|++++..+ ..||+
T Consensus 120 ~evw~Y~i~IA~Eaa~~GFdEIqfDYIRFP~~~~~~~l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~~-------v~vSa 192 (316)
T PF13200_consen 120 KEVWDYNIDIAKEAAKLGFDEIQFDYIRFPDEGRLSGLDYSENDTEESRVDAITDFLAYAREELHPYG-------VPVSA 192 (316)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeeeeecCCCCcccccccCCCCCcchHHHHHHHHHHHHHHHHhHcC-------CCEEE
Confidence 34455666788889999999999997 57761 1 23678999999999998764 78999
Q ss_pred Eeeccccc----ccCCCChhhHhccCCeEEeeeeccC
Q 037639 178 AVSYSANY----FGAINPTSAISNSLDWTNVMAYDFF 210 (361)
Q Consensus 178 a~~~~~~~----~~~~~~~~~l~~~vD~v~lm~yd~~ 210 (361)
.+.+.... ...+-+++.++++||+|..|-|--|
T Consensus 193 DVfG~~~~~~~~~~iGQ~~~~~a~~vD~IsPMiYPSh 229 (316)
T PF13200_consen 193 DVFGYVAWSPDDMGIGQDFEKIAEYVDYISPMIYPSH 229 (316)
T ss_pred EecccccccCCCCCcCCCHHHHhhhCCEEEecccccc
Confidence 88753222 2345689999999999999999777
No 30
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=97.54 E-value=0.0011 Score=55.17 Aligned_cols=115 Identities=10% Similarity=0.136 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHHHHHHc-CCCcEEEeeecCCCccchhhHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecccccccCCC
Q 037639 112 QAASRKSFIDSSINLARS-LNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAIN 190 (361)
Q Consensus 112 ~~~~r~~f~~~l~~~l~~-~~~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~ 190 (361)
+++..++..+.+.++-.. +...||.||+..+ +.....|..|+++||.+++.. +.||++.=+. |...=
T Consensus 22 ~~~~~~~i~~~l~~W~~~G~~v~giQIDfDa~-t~~L~~Y~~fL~~LR~~LP~~--------~~LSIT~L~d---W~~~~ 89 (181)
T PF11340_consen 22 PEQVLARILQLLQRWQAAGNNVAGIQIDFDAA-TSRLPAYAQFLQQLRQRLPPD--------YRLSITALPD---WLSSP 89 (181)
T ss_pred CHHHHHHHHHHHHHHHHcCCCceEEEEecCcc-ccchHHHHHHHHHHHHhCCCC--------ceEeeEEehh---hhcCc
Confidence 345556666666566533 4689999999854 356789999999999999975 7777764321 11111
Q ss_pred -ChhhHhccCCeEEeeeeccCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCceEEeccccc
Q 037639 191 -PTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQSGLSPKKIVLGFPFFG 262 (361)
Q Consensus 191 -~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~~~~spl~~~~~~~~~~~~~~~~~~~~g~~~~KivlGlp~yG 262 (361)
.+..+...||.+.+|+| . |. . .. .+...-+..+.... --.-+|+|.||
T Consensus 90 ~~L~~L~~~VDE~VlQ~y--q-Gl-~--------d~---------~~~~~yl~~l~~l~---~PFriaLp~yG 138 (181)
T PF11340_consen 90 DWLNALPGVVDELVLQVY--Q-GL-F--------DP---------PNYARYLPRLARLT---LPFRIALPQYG 138 (181)
T ss_pred hhhhhHhhcCCeeEEEee--c-CC-C--------CH---------HHHHHHHHHHhcCC---CCeEEecCcCC
Confidence 37788899999999999 2 33 2 01 12233444444443 44689999999
No 31
>KOG2331 consensus Predicted glycosylhydrolase [General function prediction only]
Probab=94.75 E-value=0.62 Score=43.90 Aligned_cols=81 Identities=19% Similarity=0.263 Sum_probs=67.9
Q ss_pred HHHhhCCCceEEEE-EcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc-cchhhHHHHHHHHHH
Q 037639 82 TVQQKNPAVKALLS-IGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN-AQMSDFGTLLTEWRS 159 (361)
Q Consensus 82 ~lk~~~~~~kvlls-igg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~-~~~~~~~~~l~~l~~ 159 (361)
.++.+ |++++-. |-.|......-+.++.+++..+..++.++++.+-.||||==|+.|.-.. ....++..|++.|.+
T Consensus 119 ~AHrH--GV~vlGTFItEw~eg~~~c~~~La~~es~~~~~e~L~~l~~~fgFdGWLiNiEn~i~~~~i~~l~~F~~~Lt~ 196 (526)
T KOG2331|consen 119 TAHRH--GVKVLGTFITEWDEGKATCKEFLATEESVEMTVERLVELARFFGFDGWLINIENKIDLAKIPNLIQFVSHLTK 196 (526)
T ss_pred hhhhc--CceeeeeEEEEeccchhHHHHHHccchhHHHHHHHHHHHHHHhCCceEEEEeeeccChhhCccHHHHHHHHHH
Confidence 45555 8999844 4556655677889999999999999999999999999999999997665 677999999999999
Q ss_pred HHHHH
Q 037639 160 AVAAE 164 (361)
Q Consensus 160 ~l~~~ 164 (361)
.++..
T Consensus 197 ~~~~~ 201 (526)
T KOG2331|consen 197 VLHSS 201 (526)
T ss_pred HHhhc
Confidence 98864
No 32
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=91.80 E-value=1.4 Score=40.24 Aligned_cols=74 Identities=16% Similarity=0.273 Sum_probs=44.5
Q ss_pred chHHHHHHHHHHHhhCCCceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc-------
Q 037639 72 NQAIFSSFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN------- 144 (361)
Q Consensus 72 ~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~------- 144 (361)
....+.+.+...++..++..++++|+|.. .+. + ..+++.+.+.|+|+|+|++--|..
T Consensus 81 g~~~~~~~i~~~~~~~~~~pvi~si~g~~--~~~-------------~-~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~ 144 (289)
T cd02810 81 GLDVWLQDIAKAKKEFPGQPLIASVGGSS--KED-------------Y-VELARKIERAGAKALELNLSCPNVGGGRQLG 144 (289)
T ss_pred CHHHHHHHHHHHHhccCCCeEEEEeccCC--HHH-------------H-HHHHHHHHHhCCCEEEEEcCCCCCCCCcccc
Confidence 34444444433443335788999999863 111 1 223556667799999999976653
Q ss_pred cchhhHHHHHHHHHHHH
Q 037639 145 AQMSDFGTLLTEWRSAV 161 (361)
Q Consensus 145 ~~~~~~~~~l~~l~~~l 161 (361)
.+.+...++++++|+.+
T Consensus 145 ~~~~~~~eiv~~vr~~~ 161 (289)
T cd02810 145 QDPEAVANLLKAVKAAV 161 (289)
T ss_pred cCHHHHHHHHHHHHHcc
Confidence 23345556666666654
No 33
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=91.48 E-value=2.1 Score=39.54 Aligned_cols=82 Identities=13% Similarity=0.137 Sum_probs=51.4
Q ss_pred HHHHHhhCCCceEE--EEEcCCCCCchhHHH-----------------------HhcCHHHHHHHHHHHHHHHHcCCCcE
Q 037639 80 TRTVQQKNPAVKAL--LSIGGGNASKESFAA-----------------------MASQAASRKSFIDSSINLARSLNFHG 134 (361)
Q Consensus 80 ~~~lk~~~~~~kvl--lsigg~~~~~~~~~~-----------------------~~~~~~~r~~f~~~l~~~l~~~~~DG 134 (361)
+..+|.. +.+++ +|||........|.. -..+++-|+-+.+. ++.+.+.||||
T Consensus 87 i~~Lk~~--g~~viaYlSvGe~E~~R~y~~~~~~~~~~~~l~~~n~~W~g~~~vd~~~~~W~~il~~r-l~~l~~kGfDG 163 (315)
T TIGR01370 87 IVRAAAA--GRWPIAYLSIGAAEDYRFYWQKGWKVNAPAWLGNEDPDWPGNYDVKYWDPEWKAIAFSY-LDRVIAQGFDG 163 (315)
T ss_pred HHHHHhC--CcEEEEEEEchhccccchhhhhhhhcCCHHHhCCCCCCCCCceeEecccHHHHHHHHHH-HHHHHHcCCCe
Confidence 4457765 67777 899986443222222 01144555555555 67778889999
Q ss_pred EEeee----cCCC------ccchhhHHHHHHHHHHHHHHH
Q 037639 135 LDIDW----EYPD------NAQMSDFGTLLTEWRSAVAAE 164 (361)
Q Consensus 135 idiD~----e~~~------~~~~~~~~~~l~~l~~~l~~~ 164 (361)
|.+|. ++.. ....+....|+++|.+..++.
T Consensus 164 vfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~ 203 (315)
T TIGR01370 164 VYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQ 203 (315)
T ss_pred EeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 99985 2211 133467888999998777765
No 34
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=90.36 E-value=0.86 Score=41.06 Aligned_cols=87 Identities=15% Similarity=0.195 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEeee-cCCCc----------------cchhhHHHHHHHHHHHHHHHHHhcCCCceEEEE
Q 037639 115 SRKSFIDSSINLARSLNFHGLDIDW-EYPDN----------------AQMSDFGTLLTEWRSAVAAEARSSGKPALLLTA 177 (361)
Q Consensus 115 ~r~~f~~~l~~~l~~~~~DGidiD~-e~~~~----------------~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~ 177 (361)
+.-+.--+|++...+.|||-|.+|+ .+|.. +..+.+..||.--|+.+. .-+|+
T Consensus 193 ~~WeYNvtIAKEa~~fGfdEiQFDYIRFP~dg~~l~~A~~~~n~~~m~~~~Al~sfL~yArE~l~----------vpIS~ 262 (400)
T COG1306 193 NLWEYNVTIAKEAAKFGFDEIQFDYIRFPADGGGLDKALNYRNTDNMTKSEALQSFLHYAREELE----------VPISA 262 (400)
T ss_pred hhhhhhHHHHHHHHHcCccceeeeEEEccCCCCchhhhhcccccccCChHHHHHHHHHHHHHhcc----------cceEE
Confidence 3345556788999999999999997 56643 122445566666666654 45777
Q ss_pred Eeecc-cc---cccCCCChhhHhccCCeEEeeeeccCC
Q 037639 178 AVSYS-AN---YFGAINPTSAISNSLDWTNVMAYDFFY 211 (361)
Q Consensus 178 a~~~~-~~---~~~~~~~~~~l~~~vD~v~lm~yd~~~ 211 (361)
.+... .+ ....+-+++.|+++||.|..|.|--|+
T Consensus 263 DIYG~nGw~~t~~~~GQ~~e~ls~yVDvIsPMfYPSHy 300 (400)
T COG1306 263 DIYGQNGWSSTDMALGQFWEALSSYVDVISPMFYPSHY 300 (400)
T ss_pred EeecccCccCCcchhhhhHHHHHhhhhhcccccccccc
Confidence 76642 11 112345789999999999999998773
No 35
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=89.77 E-value=1.3 Score=35.38 Aligned_cols=64 Identities=5% Similarity=0.167 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHhhCCCceEEE--EEcCCCCC------------------------chhHHHHhcCHHHHHHHHHHHHHH
Q 037639 73 QAIFSSFTRTVQQKNPAVKALL--SIGGGNAS------------------------KESFAAMASQAASRKSFIDSSINL 126 (361)
Q Consensus 73 ~~~~~~~~~~lk~~~~~~kvll--sigg~~~~------------------------~~~~~~~~~~~~~r~~f~~~l~~~ 126 (361)
.+.+.++++.+|++ |++|++ +++ +... ...+.....|..-++.++..+.+.
T Consensus 43 ~Dllge~v~a~h~~--Girv~ay~~~~-~d~~~~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei 119 (132)
T PF14871_consen 43 RDLLGEQVEACHER--GIRVPAYFDFS-WDEDAAERHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREI 119 (132)
T ss_pred cCHHHHHHHHHHHC--CCEEEEEEeee-cChHHHHhCCceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHH
Confidence 35678888889998 788874 443 2100 112455666777888888888888
Q ss_pred HHcCCCcEEEeee
Q 037639 127 ARSLNFHGLDIDW 139 (361)
Q Consensus 127 l~~~~~DGidiD~ 139 (361)
+++|++|||-+||
T Consensus 120 ~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 120 LDRYDVDGIFFDI 132 (132)
T ss_pred HHcCCCCEEEecC
Confidence 8999999999986
No 36
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=87.24 E-value=20 Score=33.72 Aligned_cols=89 Identities=10% Similarity=0.129 Sum_probs=48.6
Q ss_pred CCcEEEEEEEEeeCCCc----EEEeCC-cchHHHHHHHHHHHhhCCCceEEEEEcCCCCCch-h---H-----HH-----
Q 037639 48 LFTHLFCAFADLDSQNF----QVTVSS-ENQAIFSSFTRTVQQKNPAVKALLSIGGGNASKE-S---F-----AA----- 108 (361)
Q Consensus 48 ~~thii~~~~~v~~~~~----~~~~~~-~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~-~---~-----~~----- 108 (361)
..--||.....+++.+- .+.+.+ ..-..++++++.+|+. +.++++-|.-.+.... . . +.
T Consensus 46 G~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~--g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~ 123 (343)
T cd04734 46 GAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRLAEAVHAH--GAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPR 123 (343)
T ss_pred CCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHHHHHHHHhc--CCeEEEeccCCCcCcCcccCCCcccCCCCCCCCC
Confidence 34456666666665431 222222 2236788888888887 7888877743211000 0 0 00
Q ss_pred -----HhcC----HHHHHHHHHHHHHHHHcCCCcEEEeee
Q 037639 109 -----MASQ----AASRKSFIDSSINLARSLNFHGLDIDW 139 (361)
Q Consensus 109 -----~~~~----~~~r~~f~~~l~~~l~~~~~DGidiD~ 139 (361)
-..+ .+..+.|++... .+++-|||||+|..
T Consensus 124 ~~~~~~~mt~~eI~~ii~~f~~AA~-ra~~aGfDgVeih~ 162 (343)
T cd04734 124 HRAVPKAMEEEDIEEIIAAFADAAR-RCQAGGLDGVELQA 162 (343)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHH-HHHHcCCCEEEEcc
Confidence 0011 234456665444 44567999999988
No 37
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=86.17 E-value=4.6 Score=38.12 Aligned_cols=89 Identities=15% Similarity=0.064 Sum_probs=46.4
Q ss_pred CCcEEEEEEEEeeCCCc----EEEeC-CcchHHHHHHHHHHHhhCCCceEEEEEcCCCC--Cch--------------hH
Q 037639 48 LFTHLFCAFADLDSQNF----QVTVS-SENQAIFSSFTRTVQQKNPAVKALLSIGGGNA--SKE--------------SF 106 (361)
Q Consensus 48 ~~thii~~~~~v~~~~~----~~~~~-~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~--~~~--------------~~ 106 (361)
.+--||.....+++.+. .+.+. +..-..+++++..+|+. +.|+++-|...+. ... ..
T Consensus 46 G~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~l~~~vh~~--g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~ 123 (353)
T cd02930 46 GVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLITDAVHAE--GGKIALQILHAGRYAYHPLCVAPSAIRAPINPFT 123 (353)
T ss_pred CceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHHHHHHHHHc--CCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCC
Confidence 35556666666665431 11121 22235677777778876 8888887732211 000 00
Q ss_pred HHHhcC---HHHHHHHHHHHHHHHHcCCCcEEEeee
Q 037639 107 AAMASQ---AASRKSFIDSSINLARSLNFHGLDIDW 139 (361)
Q Consensus 107 ~~~~~~---~~~r~~f~~~l~~~l~~~~~DGidiD~ 139 (361)
.+.++. ++..+.|++... .+++-|||||+|.-
T Consensus 124 p~~mt~~eI~~i~~~f~~aA~-~a~~aGfDgVeih~ 158 (353)
T cd02930 124 PRELSEEEIEQTIEDFARCAA-LAREAGYDGVEIMG 158 (353)
T ss_pred CCCCCHHHHHHHHHHHHHHHH-HHHHcCCCEEEEec
Confidence 011111 133455555444 35557999999965
No 38
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.76 E-value=3.1 Score=39.83 Aligned_cols=88 Identities=14% Similarity=0.168 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCcEEEeeec--CCCc-------------c---------c------hhhHHHHHHHHHHHHH
Q 037639 113 AASRKSFIDSSINLARSLNFHGLDIDWE--YPDN-------------A---------Q------MSDFGTLLTEWRSAVA 162 (361)
Q Consensus 113 ~~~r~~f~~~l~~~l~~~~~DGidiD~e--~~~~-------------~---------~------~~~~~~~l~~l~~~l~ 162 (361)
++.|+-..+-+++.+++|..|||.||-- +|.. + + +++..+|++.+...++
T Consensus 181 Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VK 260 (418)
T COG1649 181 PEVQDFITSLVVEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVK 260 (418)
T ss_pred hHHHHHHHHHHHHHHhCCCCCceecceeecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4556666677788899999999999832 2211 1 1 3567899999999998
Q ss_pred HHHHhcCCCceEEEEEe-ecccccccCCC-----C---hhhHhccCCeEEeeee
Q 037639 163 AEARSSGKPALLLTAAV-SYSANYFGAIN-----P---TSAISNSLDWTNVMAY 207 (361)
Q Consensus 163 ~~~~~~~~~~~~ls~a~-~~~~~~~~~~~-----~---~~~l~~~vD~v~lm~y 207 (361)
+. |++..+++++ +.... ....| | .-. ..++|++..|.|
T Consensus 261 av-----Kp~v~~svsp~n~~~~-~~f~y~~~~qDw~~Wv~-~G~iD~l~pqvY 307 (418)
T COG1649 261 AV-----KPNVKFSVSPFNPLGS-ATFAYDYFLQDWRRWVR-QGLIDELAPQVY 307 (418)
T ss_pred hh-----CCCeEEEEccCCCCCc-cceehhhhhhhHHHHHH-cccHhhhhhhhh
Confidence 86 4557888877 31111 00122 1 122 568999999998
No 39
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=84.42 E-value=9.2 Score=36.22 Aligned_cols=25 Identities=12% Similarity=0.165 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHhhCCCceEEEEEcCC
Q 037639 73 QAIFSSFTRTVQQKNPAVKALLSIGGG 99 (361)
Q Consensus 73 ~~~~~~~~~~lk~~~~~~kvllsigg~ 99 (361)
-..++++.+.+|+. +.|+++-|...
T Consensus 82 i~~~~~vt~avH~~--G~~i~iQL~H~ 106 (363)
T COG1902 82 IPGLKRLTEAVHAH--GAKIFIQLWHA 106 (363)
T ss_pred hHHHHHHHHHHHhc--CCeEEEEeccC
Confidence 46688888888887 78999887544
No 40
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=84.37 E-value=17 Score=37.08 Aligned_cols=90 Identities=13% Similarity=0.119 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHhhCCCceEEEEEcC-CCC-Cc----------------------hhHHH---HhcCHHHHHHHHHHHHH
Q 037639 73 QAIFSSFTRTVQQKNPAVKALLSIGG-GNA-SK----------------------ESFAA---MASQAASRKSFIDSSIN 125 (361)
Q Consensus 73 ~~~~~~~~~~lk~~~~~~kvllsigg-~~~-~~----------------------~~~~~---~~~~~~~r~~f~~~l~~ 125 (361)
...++++++.+|++ |++|++=+-- ... +. ..|.. -..++..|+-+++++.-
T Consensus 205 ~~dlk~lV~~~H~~--Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~ 282 (613)
T TIGR01515 205 PDDFMYFVDACHQA--GIGVILDWVPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALY 282 (613)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEecccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHH
Confidence 46799999999998 9999975421 100 00 00110 11467889999999999
Q ss_pred HHHcCCCcEEEeeec-CCC-------------c--c--chhhHHHHHHHHHHHHHHH
Q 037639 126 LARSLNFHGLDIDWE-YPD-------------N--A--QMSDFGTLLTEWRSAVAAE 164 (361)
Q Consensus 126 ~l~~~~~DGidiD~e-~~~-------------~--~--~~~~~~~~l~~l~~~l~~~ 164 (361)
+++++++||+-||-- ... . . ....=..|++++++.+++.
T Consensus 283 W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~ 339 (613)
T TIGR01515 283 WAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEA 339 (613)
T ss_pred HHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHH
Confidence 999999999999962 110 0 0 0111257999999988875
No 41
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=83.83 E-value=5.4 Score=40.05 Aligned_cols=88 Identities=15% Similarity=0.172 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHhhCCCceEEEEEcC-CCCC-ch-------hHH----------HHhcCH---HHHHHHHHHHHHHHHcC
Q 037639 73 QAIFSSFTRTVQQKNPAVKALLSIGG-GNAS-KE-------SFA----------AMASQA---ASRKSFIDSSINLARSL 130 (361)
Q Consensus 73 ~~~~~~~~~~lk~~~~~~kvllsigg-~~~~-~~-------~~~----------~~~~~~---~~r~~f~~~l~~~l~~~ 130 (361)
...++++++.+|++ |++|++-+-- .... .. .|. --..++ ..|+-+++++.-|++++
T Consensus 159 ~~e~k~lV~~aH~~--Gi~VilD~V~NH~~~~~~~~~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~ 236 (542)
T TIGR02402 159 PDDLKALVDAAHGL--GLGVILDVVYNHFGPEGNYLPRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREY 236 (542)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEEccCCCCCccccccccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHh
Confidence 46789999999998 9999976421 1100 00 010 011234 77888999999999999
Q ss_pred CCcEEEeeecCCCccchhhHHHHHHHHHHHHHHH
Q 037639 131 NFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAE 164 (361)
Q Consensus 131 ~~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~~ 164 (361)
++||+-||--... .+ ..-..|++++++.+++.
T Consensus 237 ~iDGfR~D~~~~~-~~-~~~~~~l~~~~~~~~~~ 268 (542)
T TIGR02402 237 HFDGLRLDAVHAI-AD-TSAKHILEELAREVHEL 268 (542)
T ss_pred CCcEEEEeCHHHh-cc-ccHHHHHHHHHHHHHHH
Confidence 9999999952111 11 11257899999888876
No 42
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=83.42 E-value=21 Score=33.41 Aligned_cols=66 Identities=11% Similarity=0.188 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHhhCCCceEEEEEcCCCCC-ch-----hH-----------------HHHhcC---HHHHHHHHHHHHHH
Q 037639 73 QAIFSSFTRTVQQKNPAVKALLSIGGGNAS-KE-----SF-----------------AAMASQ---AASRKSFIDSSINL 126 (361)
Q Consensus 73 ~~~~~~~~~~lk~~~~~~kvllsigg~~~~-~~-----~~-----------------~~~~~~---~~~r~~f~~~l~~~ 126 (361)
-..++++.+.+|+. +.|+++-|.-.+.. .. .+ .+.++. .+..+.|++.. +.
T Consensus 81 i~~~~~l~~~vh~~--G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA-~r 157 (338)
T cd04733 81 LEAFREWAAAAKAN--GALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHAA-RL 157 (338)
T ss_pred HHHHHHHHHHHHhc--CCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHHHH-HH
Confidence 45678888888887 78888765331110 00 00 011111 12345566544 45
Q ss_pred HHcCCCcEEEeeecC
Q 037639 127 ARSLNFHGLDIDWEY 141 (361)
Q Consensus 127 l~~~~~DGidiD~e~ 141 (361)
+++.|||||+|.--+
T Consensus 158 a~~aGfDgVeih~a~ 172 (338)
T cd04733 158 AQEAGFDGVQIHAAH 172 (338)
T ss_pred HHHcCCCEEEEchhh
Confidence 678899999997653
No 43
>PRK12313 glycogen branching enzyme; Provisional
Probab=82.51 E-value=9.9 Score=39.01 Aligned_cols=91 Identities=13% Similarity=0.095 Sum_probs=59.9
Q ss_pred chHHHHHHHHHHHhhCCCceEEEEEcC-CCC---------Cc--------------hhHH---HHhcCHHHHHHHHHHHH
Q 037639 72 NQAIFSSFTRTVQQKNPAVKALLSIGG-GNA---------SK--------------ESFA---AMASQAASRKSFIDSSI 124 (361)
Q Consensus 72 ~~~~~~~~~~~lk~~~~~~kvllsigg-~~~---------~~--------------~~~~---~~~~~~~~r~~f~~~l~ 124 (361)
....++++++.+|++ |++|+|-+-- ... +. ..|. --..+++.|+-+++++.
T Consensus 218 t~~d~k~lv~~~H~~--Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~ 295 (633)
T PRK12313 218 TPEDFMYLVDALHQN--GIGVILDWVPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSAL 295 (633)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHH
Confidence 356799999999999 9999986411 100 00 0010 01236788899999999
Q ss_pred HHHHcCCCcEEEeeec-CCC----------------ccchhhHHHHHHHHHHHHHHH
Q 037639 125 NLARSLNFHGLDIDWE-YPD----------------NAQMSDFGTLLTEWRSAVAAE 164 (361)
Q Consensus 125 ~~l~~~~~DGidiD~e-~~~----------------~~~~~~~~~~l~~l~~~l~~~ 164 (361)
-+++++++||+-+|-- ... ......=..|++++++.+++.
T Consensus 296 ~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~ 352 (633)
T PRK12313 296 FWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENLEAIYFLQKLNEVVYLE 352 (633)
T ss_pred HHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999931 000 000012368999999988876
No 44
>PRK12568 glycogen branching enzyme; Provisional
Probab=82.14 E-value=19 Score=37.42 Aligned_cols=91 Identities=11% Similarity=0.228 Sum_probs=61.7
Q ss_pred chHHHHHHHHHHHhhCCCceEEEEEcCC-C---------CC-ch-------------hHHH---HhcCHHHHHHHHHHHH
Q 037639 72 NQAIFSSFTRTVQQKNPAVKALLSIGGG-N---------AS-KE-------------SFAA---MASQAASRKSFIDSSI 124 (361)
Q Consensus 72 ~~~~~~~~~~~lk~~~~~~kvllsigg~-~---------~~-~~-------------~~~~---~~~~~~~r~~f~~~l~ 124 (361)
....++.+++.++++ |++|++-+--. . ++ .. .|.. -..+++.|+-+++++.
T Consensus 317 ~~~dfk~lV~~~H~~--Gi~VIlD~V~nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~ 394 (730)
T PRK12568 317 SPDGFAQFVDACHRA--GIGVILDWVSAHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSAL 394 (730)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHH
Confidence 356799999999998 99999865210 0 00 00 1111 2346788999999999
Q ss_pred HHHHcCCCcEEEeee-c-------------CCCc--cchhhH--HHHHHHHHHHHHHH
Q 037639 125 NLARSLNFHGLDIDW-E-------------YPDN--AQMSDF--GTLLTEWRSAVAAE 164 (361)
Q Consensus 125 ~~l~~~~~DGidiD~-e-------------~~~~--~~~~~~--~~~l~~l~~~l~~~ 164 (361)
-+++++++||+-+|- . +... ...+++ ..|++++++.+++.
T Consensus 395 ~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~ 452 (730)
T PRK12568 395 EWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQ 452 (730)
T ss_pred HHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHH
Confidence 999999999999993 1 1101 122333 57999999999876
No 45
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=82.01 E-value=7.7 Score=33.91 Aligned_cols=61 Identities=18% Similarity=0.373 Sum_probs=37.4
Q ss_pred hhCCCceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc------------cchhhHHH
Q 037639 85 QKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN------------AQMSDFGT 152 (361)
Q Consensus 85 ~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~------------~~~~~~~~ 152 (361)
....+..++++|+|.. .+.|. ..+..+++.|||||+|+.-.|.. .+.....+
T Consensus 50 ~~~~~~p~~~qi~g~~--~~~~~--------------~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~e 113 (231)
T cd02801 50 RNPEERPLIVQLGGSD--PETLA--------------EAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAE 113 (231)
T ss_pred cCccCCCEEEEEcCCC--HHHHH--------------HHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHH
Confidence 3445789999999863 22222 23344556799999999765543 23344556
Q ss_pred HHHHHHHHH
Q 037639 153 LLTEWRSAV 161 (361)
Q Consensus 153 ~l~~l~~~l 161 (361)
+++++|+..
T Consensus 114 ii~~v~~~~ 122 (231)
T cd02801 114 IVRAVREAV 122 (231)
T ss_pred HHHHHHHhc
Confidence 666665544
No 46
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=81.23 E-value=11 Score=34.08 Aligned_cols=125 Identities=14% Similarity=0.118 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHcC-CCcEEEe-------eecCCCc-------cchhhHHHHHHHHHHHHHHHHHhcCCCceEEEEEee
Q 037639 116 RKSFIDSSINLARSL-NFHGLDI-------DWEYPDN-------AQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVS 180 (361)
Q Consensus 116 r~~f~~~l~~~l~~~-~~DGidi-------D~e~~~~-------~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a~~ 180 (361)
..+.+.+|-+-|..| .||||=| |+|.+.. .....+..|..+|++.++... +.+...--+.
T Consensus 120 ~r~~I~~IYeDLA~y~~fdGILFhDDa~L~D~E~~~~~~~~~~~~Kt~~Li~ft~eL~~~v~~~r-----p~lkTARNiy 194 (294)
T PF14883_consen 120 ARQIIKEIYEDLARYSKFDGILFHDDAVLSDFEIAAIRQNPADRQKTRALIDFTMELAAAVRRYR-----PDLKTARNIY 194 (294)
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEcCCccccchhhhhhccChhhHHHHHHHHHHHHHHHHHHHHhC-----ccchhhhccc
Confidence 345688898889888 7999987 4553222 122567889999998888762 1122211122
Q ss_pred cccccc--cCC---CChhhHhccCCeEEeeeeccCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCceE
Q 037639 181 YSANYF--GAI---NPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQSGLSPKKIV 255 (361)
Q Consensus 181 ~~~~~~--~~~---~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~~~~spl~~~~~~~~~~~~~~~~~~~~g~~~~Kiv 255 (361)
+.+-.. ... -++....+..|+.-+|++-+. .. .. . ...++...++.......+.+|+|
T Consensus 195 a~pvl~P~se~WfAQnl~~fl~~YD~taimAMPym-E~------~~---~-------~~~WL~~Lv~~v~~~p~~l~Ktv 257 (294)
T PF14883_consen 195 AEPVLNPESEAWFAQNLDDFLKAYDYTAIMAMPYM-EQ------AE---D-------PEQWLAQLVDAVAARPGGLDKTV 257 (294)
T ss_pred ccccCCcchhhHHHHhHHHHHHhCCeeheeccchh-cc------cc---C-------HHHHHHHHHHHHHhcCCcccceE
Confidence 211111 111 267778888999999987665 11 11 1 33577888888777767789999
Q ss_pred Eeccccc
Q 037639 256 LGFPFFG 262 (361)
Q Consensus 256 lGlp~yG 262 (361)
+-|.+.-
T Consensus 258 FELQa~d 264 (294)
T PF14883_consen 258 FELQAVD 264 (294)
T ss_pred EEEeccC
Confidence 9988743
No 47
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=80.72 E-value=12 Score=38.08 Aligned_cols=83 Identities=13% Similarity=0.232 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhhCCCceEEEEEcC-CCC--CchhHH-------------------------HHhcCHHHHHHHHHHHHH
Q 037639 74 AIFSSFTRTVQQKNPAVKALLSIGG-GNA--SKESFA-------------------------AMASQAASRKSFIDSSIN 125 (361)
Q Consensus 74 ~~~~~~~~~lk~~~~~~kvllsigg-~~~--~~~~~~-------------------------~~~~~~~~r~~f~~~l~~ 125 (361)
..++++++.+|++ |++|++=+=- ... ....|. -...++..|+-+++++.-
T Consensus 229 ~efk~lV~~~H~~--Gi~VilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~ 306 (605)
T TIGR02104 229 RELKQMIQALHEN--GIRVIMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLY 306 (605)
T ss_pred HHHHHHHHHHHHC--CCEEEEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHH
Confidence 5689999999998 9999975411 100 000000 012356788889999999
Q ss_pred HHHcCCCcEEEeeecCCCccchhhHHHHHHHHHHHHHHH
Q 037639 126 LARSLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAE 164 (361)
Q Consensus 126 ~l~~~~~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~~ 164 (361)
|++++++||+-||.-... + ..|++++++++++.
T Consensus 307 W~~e~~iDGfR~D~~~~~--~----~~~~~~~~~~~~~~ 339 (605)
T TIGR02104 307 WVKEYNIDGFRFDLMGIH--D----IETMNEIRKALNKI 339 (605)
T ss_pred HHHHcCCCEEEEechhcC--C----HHHHHHHHHHHHhh
Confidence 999999999999964211 1 34778888877664
No 48
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=80.28 E-value=10 Score=40.34 Aligned_cols=83 Identities=14% Similarity=0.230 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhhCCCceEEEEE-------cCCCCC-------chhHH----------------HHhcCHHHHHHHHHHH
Q 037639 74 AIFSSFTRTVQQKNPAVKALLSI-------GGGNAS-------KESFA----------------AMASQAASRKSFIDSS 123 (361)
Q Consensus 74 ~~~~~~~~~lk~~~~~~kvllsi-------gg~~~~-------~~~~~----------------~~~~~~~~r~~f~~~l 123 (361)
..++++++.+|++ |++|++=+ +|.... ...|. ....++.-|+-+++++
T Consensus 404 ~Efk~mV~alH~~--Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl 481 (898)
T TIGR02103 404 KEFREMVQALNKT--GLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSL 481 (898)
T ss_pred HHHHHHHHHHHHC--CCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHH
Confidence 3588889899887 99999754 221110 00010 0123467788899999
Q ss_pred HHHHHcCCCcEEEeeecCCCccchhhHHHHHHHHHHHHHHH
Q 037639 124 INLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAE 164 (361)
Q Consensus 124 ~~~l~~~~~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~~ 164 (361)
.-|+++|++||+-||.-.. .-..|+++++.++++.
T Consensus 482 ~~W~~ey~VDGFRfDlm~~------~~~~f~~~~~~~l~~i 516 (898)
T TIGR02103 482 VVWAKDYKVDGFRFDLMGH------HPKAQMLAAREAIKAL 516 (898)
T ss_pred HHHHHHcCCCEEEEechhh------CCHHHHHHHHHHHHHh
Confidence 9999999999999997522 1245666666666654
No 49
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=80.20 E-value=14 Score=33.80 Aligned_cols=71 Identities=10% Similarity=0.158 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhhCCCceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc--------c
Q 037639 74 AIFSSFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN--------A 145 (361)
Q Consensus 74 ~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~--------~ 145 (361)
..+.+.+...++ ..+..++++|+|.. .+.|+ ..++.+++.|+|+|+|++--|.. .
T Consensus 75 ~~~~~~~~~~~~-~~~~p~ivsi~g~~---------------~~~~~-~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~ 137 (296)
T cd04740 75 EAFLEELLPWLR-EFGTPVIASIAGST---------------VEEFV-EVAEKLADAGADAIELNISCPNVKGGGMAFGT 137 (296)
T ss_pred HHHHHHHHHHhh-cCCCcEEEEEecCC---------------HHHHH-HHHHHHHHcCCCEEEEECCCCCCCCCcccccC
Confidence 344443333333 24678999998852 12233 34556677899999999876643 2
Q ss_pred chhhHHHHHHHHHHHH
Q 037639 146 QMSDFGTLLTEWRSAV 161 (361)
Q Consensus 146 ~~~~~~~~l~~l~~~l 161 (361)
+.+...++++++|+..
T Consensus 138 ~~~~~~eiv~~vr~~~ 153 (296)
T cd04740 138 DPEAVAEIVKAVKKAT 153 (296)
T ss_pred CHHHHHHHHHHHHhcc
Confidence 3344455566665544
No 50
>PRK05402 glycogen branching enzyme; Provisional
Probab=79.96 E-value=16 Score=38.26 Aligned_cols=91 Identities=13% Similarity=0.157 Sum_probs=61.1
Q ss_pred chHHHHHHHHHHHhhCCCceEEEEEcC-CCC---------C-c-------------hhHH---HHhcCHHHHHHHHHHHH
Q 037639 72 NQAIFSSFTRTVQQKNPAVKALLSIGG-GNA---------S-K-------------ESFA---AMASQAASRKSFIDSSI 124 (361)
Q Consensus 72 ~~~~~~~~~~~lk~~~~~~kvllsigg-~~~---------~-~-------------~~~~---~~~~~~~~r~~f~~~l~ 124 (361)
....++.+++.+|++ |++|+|-+=- ... + + ..|. --..+++.|+-+++++.
T Consensus 313 t~~dfk~lV~~~H~~--Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~ 390 (726)
T PRK05402 313 TPDDFRYFVDACHQA--GIGVILDWVPAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANAL 390 (726)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHH
Confidence 356799999999998 9999986411 110 0 0 0010 12346788899999999
Q ss_pred HHHHcCCCcEEEeee-cCC--------------Cc---cchhhHHHHHHHHHHHHHHH
Q 037639 125 NLARSLNFHGLDIDW-EYP--------------DN---AQMSDFGTLLTEWRSAVAAE 164 (361)
Q Consensus 125 ~~l~~~~~DGidiD~-e~~--------------~~---~~~~~~~~~l~~l~~~l~~~ 164 (361)
-+++++++||+-+|- ... .. .+...-..|++++++.++..
T Consensus 391 ~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~ 448 (726)
T PRK05402 391 YWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEE 448 (726)
T ss_pred HHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999994 211 00 11123468999999998875
No 51
>PRK14706 glycogen branching enzyme; Provisional
Probab=78.53 E-value=29 Score=35.68 Aligned_cols=90 Identities=10% Similarity=0.069 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHhhCCCceEEEEEcCC-CC---------C-c-------------hhHHH---HhcCHHHHHHHHHHHHH
Q 037639 73 QAIFSSFTRTVQQKNPAVKALLSIGGG-NA---------S-K-------------ESFAA---MASQAASRKSFIDSSIN 125 (361)
Q Consensus 73 ~~~~~~~~~~lk~~~~~~kvllsigg~-~~---------~-~-------------~~~~~---~~~~~~~r~~f~~~l~~ 125 (361)
...++.+++.++++ |++|++-+--. .. + + ..|.. -..+++.|+-+++++.-
T Consensus 216 ~~~~~~lv~~~H~~--gi~VilD~v~nH~~~~~~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~ 293 (639)
T PRK14706 216 PEDFKYLVNHLHGL--GIGVILDWVPGHFPTDESGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALK 293 (639)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEecccccCcchhhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHH
Confidence 56789999999998 99999764110 00 0 0 00111 12467889999999999
Q ss_pred HHHcCCCcEEEeee-cCCCc---------------cchhhHHHHHHHHHHHHHHH
Q 037639 126 LARSLNFHGLDIDW-EYPDN---------------AQMSDFGTLLTEWRSAVAAE 164 (361)
Q Consensus 126 ~l~~~~~DGidiD~-e~~~~---------------~~~~~~~~~l~~l~~~l~~~ 164 (361)
+++++++||+-+|- ..... .....=..||+++++.+++.
T Consensus 294 W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~ 348 (639)
T PRK14706 294 WLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHM 348 (639)
T ss_pred HHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHh
Confidence 99999999999994 22110 11122357999999988875
No 52
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=78.22 E-value=4.2 Score=40.73 Aligned_cols=54 Identities=11% Similarity=0.222 Sum_probs=38.5
Q ss_pred hcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCC--------Cccc---hhhHHHHHHHHHHHHHH
Q 037639 110 ASQAASRKSFIDSSINLARSLNFHGLDIDWEYP--------DNAQ---MSDFGTLLTEWRSAVAA 163 (361)
Q Consensus 110 ~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~--------~~~~---~~~~~~~l~~l~~~l~~ 163 (361)
..++.-|.-++++..+.++..||||+.||=-.. +..- ...|..||+++|++++.
T Consensus 237 P~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~~ 301 (559)
T PF13199_consen 237 PGNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALPD 301 (559)
T ss_dssp TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCCC
Confidence 346788899999999999999999999984221 1122 57899999999999853
No 53
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=78.21 E-value=22 Score=33.97 Aligned_cols=57 Identities=14% Similarity=0.228 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHhhCCCceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc
Q 037639 73 QAIFSSFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN 144 (361)
Q Consensus 73 ~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~ 144 (361)
.+.+.+.+..+|++.|.+.++.||.|... .+.|.. +++.+.+.|.|+|+|++--|..
T Consensus 97 ~~~~l~~i~~~k~~~~~~pvIaSi~~~~s-~~~~~~--------------~a~~~e~~GaD~iELNiSCPn~ 153 (385)
T PLN02495 97 FETMLAEFKQLKEEYPDRILIASIMEEYN-KDAWEE--------------IIERVEETGVDALEINFSCPHG 153 (385)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEccCCCC-HHHHHH--------------HHHHHHhcCCCEEEEECCCCCC
Confidence 44455555567777788899999955211 344443 3445667889999999976653
No 54
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=77.81 E-value=8.7 Score=35.58 Aligned_cols=69 Identities=19% Similarity=0.170 Sum_probs=41.6
Q ss_pred CceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc------------cchhhHHHHHHH
Q 037639 89 AVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN------------AQMSDFGTLLTE 156 (361)
Q Consensus 89 ~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~------------~~~~~~~~~l~~ 156 (361)
...+.+.|.|.+ .+. |++ .+..+++.|+|||||+.--|.. .+.+...+++++
T Consensus 62 e~p~~vQl~g~~--p~~-------------~~~-aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~a 125 (312)
T PRK10550 62 GTLVRIQLLGQY--PQW-------------LAE-NAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKA 125 (312)
T ss_pred CCcEEEEeccCC--HHH-------------HHH-HHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHH
Confidence 456889998853 222 222 2334466799999999887753 344555666666
Q ss_pred HHHHHHHHHHhcCCCceEEEEEeec
Q 037639 157 WRSAVAAEARSSGKPALLLTAAVSY 181 (361)
Q Consensus 157 l~~~l~~~~~~~~~~~~~ls~a~~~ 181 (361)
+|++++.. +.||+-+..
T Consensus 126 vr~~~~~~--------~pVsvKiR~ 142 (312)
T PRK10550 126 MREAVPAH--------LPVTVKVRL 142 (312)
T ss_pred HHHhcCCC--------cceEEEEEC
Confidence 66655321 456666543
No 55
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=76.94 E-value=20 Score=32.95 Aligned_cols=57 Identities=5% Similarity=0.154 Sum_probs=35.9
Q ss_pred CceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCC-CcEEEeeecCCCc--------cchhhHHHHHHHHHH
Q 037639 89 AVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLN-FHGLDIDWEYPDN--------AQMSDFGTLLTEWRS 159 (361)
Q Consensus 89 ~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~-~DGidiD~e~~~~--------~~~~~~~~~l~~l~~ 159 (361)
+..+++||+|.+ . +.|+ .+++.+++.| +|||+|+.--|.. .+.+...++++++|+
T Consensus 91 ~~p~i~si~g~~--~-------------~~~~-~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~ 154 (301)
T PRK07259 91 DTPIIANVAGST--E-------------EEYA-EVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKE 154 (301)
T ss_pred CCcEEEEeccCC--H-------------HHHH-HHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHH
Confidence 677999998853 1 2333 3455667888 9999998754432 234455566666665
Q ss_pred HH
Q 037639 160 AV 161 (361)
Q Consensus 160 ~l 161 (361)
..
T Consensus 155 ~~ 156 (301)
T PRK07259 155 VV 156 (301)
T ss_pred hc
Confidence 54
No 56
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=76.24 E-value=24 Score=32.41 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhCCCceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc-----------
Q 037639 76 FSSFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN----------- 144 (361)
Q Consensus 76 ~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~----------- 144 (361)
+.+.+..+++..+...++.++.|... .+ .|+ .+++.+.+.++|+|||++-.|..
T Consensus 86 ~~~~~~~~~~~~~~~p~i~si~G~~~-~~-------------~~~-~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~ 150 (299)
T cd02940 86 WLKEIRELKKDFPDKILIASIMCEYN-KE-------------DWT-ELAKLVEEAGADALELNFSCPHGMPERGMGAAVG 150 (299)
T ss_pred HHHHHHHHHhhCCCCeEEEEecCCCC-HH-------------HHH-HHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhc
Confidence 33334445554445778899977511 22 222 23455566789999999987764
Q ss_pred cchhhHHHHHHHHHHHH
Q 037639 145 AQMSDFGTLLTEWRSAV 161 (361)
Q Consensus 145 ~~~~~~~~~l~~l~~~l 161 (361)
.+.+.+.++++.+|+..
T Consensus 151 ~~~~~~~~iv~~v~~~~ 167 (299)
T cd02940 151 QDPELVEEICRWVREAV 167 (299)
T ss_pred cCHHHHHHHHHHHHHhc
Confidence 34556666666666543
No 57
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=76.10 E-value=1.6 Score=32.72 Aligned_cols=12 Identities=33% Similarity=0.293 Sum_probs=8.0
Q ss_pred CCCcchhHHHHH
Q 037639 1 MAPKILPVLLSF 12 (361)
Q Consensus 1 M~~~~~~~~l~~ 12 (361)
|+||++++|.++
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 898876655444
No 58
>PRK10785 maltodextrin glucosidase; Provisional
Probab=75.56 E-value=23 Score=36.05 Aligned_cols=53 Identities=11% Similarity=0.066 Sum_probs=36.1
Q ss_pred CHHHHHHHHH---H-HHHHHHc-CCCcEEEeeecC--CCccchhhHHHHHHHHHHHHHHH
Q 037639 112 QAASRKSFID---S-SINLARS-LNFHGLDIDWEY--PDNAQMSDFGTLLTEWRSAVAAE 164 (361)
Q Consensus 112 ~~~~r~~f~~---~-l~~~l~~-~~~DGidiD~e~--~~~~~~~~~~~~l~~l~~~l~~~ 164 (361)
+++.|+.+++ + +..|+++ +|+||.-||--. +.......-..|++++++++++.
T Consensus 304 np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~ 363 (598)
T PRK10785 304 SEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEE 363 (598)
T ss_pred CHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhccccCccccHHHHHHHHHHHHhh
Confidence 6777888886 3 4557886 899999999632 11112223457899999988765
No 59
>PF14885 GHL15: Hypothetical glycosyl hydrolase family 15
Probab=75.18 E-value=3.8 Score=29.46 Aligned_cols=44 Identities=9% Similarity=0.139 Sum_probs=32.5
Q ss_pred cCCCCCchhHHHHhcC-HHHHHHHHHHHHHHHHcCCCcEEEeeec
Q 037639 97 GGGNASKESFAAMASQ-AASRKSFIDSSINLARSLNFHGLDIDWE 140 (361)
Q Consensus 97 gg~~~~~~~~~~~~~~-~~~r~~f~~~l~~~l~~~~~DGidiD~e 140 (361)
|-|......+.....+ +.-|+.+++.+++.+..-.+|||-+|--
T Consensus 32 ~~W~~~~~~~~~~~~~~~~~r~~w~~~v~e~~~~s~~DGv~~Dn~ 76 (79)
T PF14885_consen 32 SEWPGYPGHYQMYVWSCPDYRRYWVDAVVEELQNSPWDGVFADND 76 (79)
T ss_pred eecCCCCceeeeccCCcchHHHHHHHHHHHHHhcCccceeeeecc
Confidence 3343333444444555 8999999999999999889999999853
No 60
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=74.26 E-value=19 Score=33.39 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=28.1
Q ss_pred hCCCceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCC
Q 037639 86 KNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPD 143 (361)
Q Consensus 86 ~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~ 143 (361)
...+..++++|+|.+ .+.|. ..+..+++.|+|||||+.--|.
T Consensus 59 ~~~~~p~i~ql~g~~--~~~~~--------------~aa~~~~~~G~d~IelN~gcP~ 100 (319)
T TIGR00737 59 AEDETPISVQLFGSD--PDTMA--------------EAAKINEELGADIIDINMGCPV 100 (319)
T ss_pred CCccceEEEEEeCCC--HHHHH--------------HHHHHHHhCCCCEEEEECCCCH
Confidence 334677889999864 22222 2344567789999999987664
No 61
>PLN02960 alpha-amylase
Probab=73.68 E-value=32 Score=36.36 Aligned_cols=90 Identities=8% Similarity=-0.029 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHhhCCCceEEEEEcC-C----------CCCc--------------hhHHH---HhcCHHHHHHHHHHHH
Q 037639 73 QAIFSSFTRTVQQKNPAVKALLSIGG-G----------NASK--------------ESFAA---MASQAASRKSFIDSSI 124 (361)
Q Consensus 73 ~~~~~~~~~~lk~~~~~~kvllsigg-~----------~~~~--------------~~~~~---~~~~~~~r~~f~~~l~ 124 (361)
...+..+++.+|++ |++|++-+-- . .++. ..|.. -..++..|+-+++++.
T Consensus 465 p~dfk~LVd~aH~~--GI~VILDvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~ 542 (897)
T PLN02960 465 PDDFKRLVDEAHGL--GLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLN 542 (897)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHH
Confidence 56789999999998 9999987610 0 0000 01111 1346788899999999
Q ss_pred HHHHcCCCcEEEeeec-------------------CCCccchhhHHHHHHHHHHHHHHH
Q 037639 125 NLARSLNFHGLDIDWE-------------------YPDNAQMSDFGTLLTEWRSAVAAE 164 (361)
Q Consensus 125 ~~l~~~~~DGidiD~e-------------------~~~~~~~~~~~~~l~~l~~~l~~~ 164 (361)
-|++++++||+-+|-- ++.......-..||+++.+.+++.
T Consensus 543 yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~ 601 (897)
T PLN02960 543 WWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQYVDRDALIYLILANEMLHQL 601 (897)
T ss_pred HHHHHHCCCceeecccceeeeeccCccccCCcccccCCccCCchHHHHHHHHHHHHHhh
Confidence 9999999999999821 111112234567888888888764
No 62
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=73.63 E-value=18 Score=33.80 Aligned_cols=47 Identities=4% Similarity=0.043 Sum_probs=29.1
Q ss_pred CCcEEEEEEEEeeCCCc----EEEeC-CcchHHHHHHHHHHHhhCCCceEEEEE
Q 037639 48 LFTHLFCAFADLDSQNF----QVTVS-SENQAIFSSFTRTVQQKNPAVKALLSI 96 (361)
Q Consensus 48 ~~thii~~~~~v~~~~~----~~~~~-~~~~~~~~~~~~~lk~~~~~~kvllsi 96 (361)
.+.-|+.....+++.+. .+.+. +..-..++++.+.+|+. +.|+++-|
T Consensus 46 g~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~l~~~vh~~--G~~~~~QL 97 (336)
T cd02932 46 GAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKRIVDFIHSQ--GAKIGIQL 97 (336)
T ss_pred CCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHHHHHHHHhc--CCcEEEEc
Confidence 46666666666765541 12222 22346678888788876 78888776
No 63
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=73.61 E-value=8.2 Score=35.87 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=27.3
Q ss_pred CCcEEEEEEEEeeCCCc----EEEe-CCcchHHHHHHHHHHHhhCCCceEEEEE
Q 037639 48 LFTHLFCAFADLDSQNF----QVTV-SSENQAIFSSFTRTVQQKNPAVKALLSI 96 (361)
Q Consensus 48 ~~thii~~~~~v~~~~~----~~~~-~~~~~~~~~~~~~~lk~~~~~~kvllsi 96 (361)
...-||.....+++.+. .+.+ ++..-..+++++..+|+. +.|+++-|
T Consensus 46 g~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~--g~~~~~Ql 97 (327)
T cd02803 46 GVGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLRKLTEAVHAH--GAKIFAQL 97 (327)
T ss_pred CCcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHHHHHHHHHhC--CCHhhHHh
Confidence 35566666666666541 1112 222346678888788877 67776555
No 64
>PF07364 DUF1485: Protein of unknown function (DUF1485); InterPro: IPR015995 Proteins in this entry are involved in degradation of the cyanobacterial heptapeptide hepatotoxin microcystin LR, and are encoded in the mlr gene cluster []. MlrC from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) is believed to mediate the last step of peptidolytic degradation of the tetrapeptide. It is suspected to be a metallopeptidase based on homology to known peptidases and its inhibition by metal chelators. The proteins encoded by the mlr cluster may be involved in cell wall peptidoglycan cycling and subsequently act fortuitously in hydrolysis of microcystin LR. This entry represents the N-terminal region of these proteins.; PDB: 3IUU_A.
Probab=73.02 E-value=37 Score=31.11 Aligned_cols=148 Identities=14% Similarity=0.213 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhhCCCceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCC-CcEEEeeecCCCc--cchhhHH
Q 037639 75 IFSSFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLN-FHGLDIDWEYPDN--AQMSDFG 151 (361)
Q Consensus 75 ~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~-~DGidiD~e~~~~--~~~~~~~ 151 (361)
.+..+++.+++. +..++..+-.+..-+.. -+.+.-+.+...+++-|+..+ +|||-|+.-.-.. ...+.=.
T Consensus 46 ~~~g~~~~a~~~--g~e~vp~~~a~A~P~G~-----v~~~aye~l~~eil~~l~~agp~Dgv~L~LHGAmv~e~~~D~EG 118 (292)
T PF07364_consen 46 EIGGFLDAAEAQ--GWEVVPLLWAAAEPGGP-----VTREAYERLRDEILDRLRAAGPLDGVLLDLHGAMVAEGYDDGEG 118 (292)
T ss_dssp HHHHHHHHHHHT--T-EEEEEEEEEE-SEE------B-HHHHHHHHHHHHHHHHHS---SEEEEEE-S---BSS-SSHHH
T ss_pred chHHHHHHHHHC--CCEEEeeEeeeecCCCc-----ccHHHHHHHHHHHHHHHHhcCCcCEEEEeccCcEeecCCCCchH
Confidence 345566667666 78888777443221111 234666788888999999886 9999999975433 2233446
Q ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEEeecccccccCCCChhhHhccCCeEEeeeeccCCCCCCCCCCCCCCCCCCCCCC
Q 037639 152 TLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALFSPD 231 (361)
Q Consensus 152 ~~l~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~~~~spl~~~~ 231 (361)
.|++++|+.++.. ..|.+++-...+ -.+.+.+.+|.+. +|-. .|+...+.
T Consensus 119 ~Ll~rvR~~vGp~--------vpI~~tlDlHaN------vs~~mv~~ad~~~--~yrt------------yPH~D~~e-- 168 (292)
T PF07364_consen 119 DLLRRVRAIVGPD--------VPIAATLDLHAN------VSPRMVEAADIIV--GYRT------------YPHIDMYE-- 168 (292)
T ss_dssp HHHHHHHHHHTTT--------SEEEEEE-TT----------HHHHHH-SEEE--E---------------SS---HHH--
T ss_pred HHHHHHHHHhCCC--------CeEEEEeCCCCC------ccHHHHHhCCEEE--EcCC------------CCccCHHH--
Confidence 7999999999865 566665543222 2367888999764 3322 23332211
Q ss_pred CCCCcHHHHHHHH---HHcCCCCCceEEecccccc
Q 037639 232 RSQVSGDSGIRAW---IQSGLSPKKIVLGFPFFGH 263 (361)
Q Consensus 232 ~~~~~~~~~~~~~---~~~g~~~~KivlGlp~yG~ 263 (361)
.-+.+.+.+ ++.++.|.+...-+|+-..
T Consensus 169 ----tg~~aa~ll~~~l~g~~rp~~a~~~~P~l~~ 199 (292)
T PF07364_consen 169 ----TGERAARLLLRALRGEIRPVMALRRLPMLLP 199 (292)
T ss_dssp ----HHHHHHHHHHHTTT-SS--EEEEEEE-B--B
T ss_pred ----HHHHHHHHHHHHHcCCCCceEEEecCCeEcc
Confidence 112333333 3355677788888887654
No 65
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=72.97 E-value=21 Score=38.93 Aligned_cols=65 Identities=18% Similarity=0.284 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhCCCceEEEEEcC-CCCCchhHH------------------------HHhcCHHHHHHHHHHHHHHHH
Q 037639 74 AIFSSFTRTVQQKNPAVKALLSIGG-GNASKESFA------------------------AMASQAASRKSFIDSSINLAR 128 (361)
Q Consensus 74 ~~~~~~~~~lk~~~~~~kvllsigg-~~~~~~~~~------------------------~~~~~~~~r~~f~~~l~~~l~ 128 (361)
..++++++.+|++ |++|++=+=- .......|. ....++..|+-+++++.-|++
T Consensus 555 ~EfK~LV~alH~~--GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ 632 (1111)
T TIGR02102 555 AEFKNLINEIHKR--GMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVD 632 (1111)
T ss_pred HHHHHHHHHHHHC--CCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 4688999999988 9999975411 110000000 011246778888999999999
Q ss_pred cCCCcEEEeeec
Q 037639 129 SLNFHGLDIDWE 140 (361)
Q Consensus 129 ~~~~DGidiD~e 140 (361)
+|++||+-||.-
T Consensus 633 ey~VDGFRfDl~ 644 (1111)
T TIGR02102 633 EFKVDGFRFDMM 644 (1111)
T ss_pred hcCCcEEEEecc
Confidence 999999999974
No 66
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=71.11 E-value=29 Score=32.59 Aligned_cols=49 Identities=8% Similarity=0.028 Sum_probs=32.2
Q ss_pred CCcEEEEEEEEeeCCCc----EEEeCC-cchHHHHHHHHHHHhhCCCceEEEEEcC
Q 037639 48 LFTHLFCAFADLDSQNF----QVTVSS-ENQAIFSSFTRTVQQKNPAVKALLSIGG 98 (361)
Q Consensus 48 ~~thii~~~~~v~~~~~----~~~~~~-~~~~~~~~~~~~lk~~~~~~kvllsigg 98 (361)
.+--||.....+++.+. .+.+.+ ..-..++++++.+|+. |.|+++-|.-
T Consensus 49 G~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~~~k~l~~~vh~~--Ga~i~~QL~H 102 (341)
T PF00724_consen 49 GAGLIITEATAVSPEGRGFPGQPGIWDDEQIPGLKKLADAVHAH--GAKIIAQLWH 102 (341)
T ss_dssp TTSEEEEEEEESSGGGSSSTTSEBSSSHHHHHHHHHHHHHHHHT--TSEEEEEEE-
T ss_pred CCceEEecccccccccccccccchhchhhHHHHHHHHHHHHHhc--Cccceeeccc
Confidence 47777888777876542 223322 2346688888888887 8999987743
No 67
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=70.66 E-value=39 Score=30.94 Aligned_cols=77 Identities=14% Similarity=0.183 Sum_probs=44.6
Q ss_pred eCCcchHHHHHHHHHHHhh--CCCceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcC---CCcEEEeeecCC
Q 037639 68 VSSENQAIFSSFTRTVQQK--NPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSL---NFHGLDIDWEYP 142 (361)
Q Consensus 68 ~~~~~~~~~~~~~~~lk~~--~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~---~~DGidiD~e~~ 142 (361)
+++...+.+.+.+..+++. .++..+++||+|. . +. +++.+ +.+.+. +.|+|||++--|
T Consensus 68 ~~n~g~~~~~~~i~~~~~~~~~~~~pvivsi~g~-~--~~-------------~~~~~-~~~~~~~~~~ad~ielN~sCP 130 (294)
T cd04741 68 LPNLGLDYYLEYIRTISDGLPGSAKPFFISVTGS-A--ED-------------IAAMY-KKIAAHQKQFPLAMELNLSCP 130 (294)
T ss_pred CCCcCHHHHHHHHHHHhhhccccCCeEEEECCCC-H--HH-------------HHHHH-HHHHhhccccccEEEEECCCC
Confidence 3444444455444444432 2467788999874 1 22 22222 233333 689999999876
Q ss_pred Cc-------cchhhHHHHHHHHHHHH
Q 037639 143 DN-------AQMSDFGTLLTEWRSAV 161 (361)
Q Consensus 143 ~~-------~~~~~~~~~l~~l~~~l 161 (361)
.. .+.+.+.++++.+++..
T Consensus 131 n~~~~~~~~~~~~~~~~i~~~v~~~~ 156 (294)
T cd04741 131 NVPGKPPPAYDFDATLEYLTAVKAAY 156 (294)
T ss_pred CCCCcccccCCHHHHHHHHHHHHHhc
Confidence 53 35666777777777664
No 68
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=70.59 E-value=25 Score=33.30 Aligned_cols=47 Identities=9% Similarity=-0.018 Sum_probs=27.3
Q ss_pred CCcEEEEEEEEeeCCCc-----EEEe-CCcchHHHHHHHHHHHhhCCCceEEEEE
Q 037639 48 LFTHLFCAFADLDSQNF-----QVTV-SSENQAIFSSFTRTVQQKNPAVKALLSI 96 (361)
Q Consensus 48 ~~thii~~~~~v~~~~~-----~~~~-~~~~~~~~~~~~~~lk~~~~~~kvllsi 96 (361)
...-|+.....++..+. ...+ +++.-..+++++..+|+. +.|+++-|
T Consensus 46 G~GlIite~~~V~~~~~~~~~~~~~~~~d~~i~~~~~l~d~vh~~--Ga~i~~QL 98 (361)
T cd04747 46 GVGLIITEGTAVDHPAASGDPNVPRFHGEDALAGWKKVVDEVHAA--GGKIAPQL 98 (361)
T ss_pred CccEEEecceEeccccccCCCCCCccCCHHHHHHHHHHHHHHHhc--CCEEEEec
Confidence 34556666666653321 1111 222335677777778877 88888877
No 69
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=69.59 E-value=12 Score=35.15 Aligned_cols=81 Identities=12% Similarity=0.110 Sum_probs=55.8
Q ss_pred HHHHHHHhhCCCceEEEEEcC----CCCCchhHHHHhc-CHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc--cchhhH
Q 037639 78 SFTRTVQQKNPAVKALLSIGG----GNASKESFAAMAS-QAASRKSFIDSSINLARSLNFHGLDIDWEYPDN--AQMSDF 150 (361)
Q Consensus 78 ~~~~~lk~~~~~~kvllsigg----~~~~~~~~~~~~~-~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~--~~~~~~ 150 (361)
+.|.+.|.. +|.|+-.|-= .+++.+.+..|+. +++-.--+++.++++.+.|||||--|+=|-.+. +..+++
T Consensus 131 DVIDaaHrN--GVPvlGt~Ffppk~ygg~~ewv~~mLk~dedGsfP~A~klv~vAkyYGfdGwFINqET~G~~~~~a~~M 208 (553)
T COG4724 131 DVIDAAHRN--GVPVLGTLFFPPKNYGGDQEWVAEMLKQDEDGSFPIARKLVDVAKYYGFDGWFINQETTGDVKPLAEKM 208 (553)
T ss_pred hhhhhhhcC--CCceeeeeecChhhcCchHHHHHHHHhcCcCCCChhHHHHHHHHHhcCcceeEecccccCCCcchHHHH
Confidence 455555544 8888865521 1112455665554 556667799999999999999999999885544 667778
Q ss_pred HHHHHHHHHH
Q 037639 151 GTLLTEWRSA 160 (361)
Q Consensus 151 ~~~l~~l~~~ 160 (361)
.+|+..+++.
T Consensus 209 ~~f~ly~ke~ 218 (553)
T COG4724 209 RQFMLYSKEY 218 (553)
T ss_pred HHHHHHHHhc
Confidence 8888777654
No 70
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=69.34 E-value=17 Score=33.64 Aligned_cols=64 Identities=16% Similarity=0.281 Sum_probs=37.5
Q ss_pred HHhhCCCceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc------------cchhhH
Q 037639 83 VQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN------------AQMSDF 150 (361)
Q Consensus 83 lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~------------~~~~~~ 150 (361)
+.......++.+-|+|.+. + .....+..+.+.++|||||+.-=|.. .+.+..
T Consensus 47 ~~~~~~~~p~~~Ql~g~~~--~--------------~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~ 110 (309)
T PF01207_consen 47 LPFLPNERPLIVQLFGNDP--E--------------DLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLL 110 (309)
T ss_dssp S-GCC-T-TEEEEEE-S-H--H--------------HHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHH
T ss_pred ccccccccceeEEEeeccH--H--------------HHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHh
Confidence 3334345678899998631 2 22234566777999999999987654 577788
Q ss_pred HHHHHHHHHHHH
Q 037639 151 GTLLTEWRSAVA 162 (361)
Q Consensus 151 ~~~l~~l~~~l~ 162 (361)
.++++++++.++
T Consensus 111 ~~iv~~~~~~~~ 122 (309)
T PF01207_consen 111 AEIVKAVRKAVP 122 (309)
T ss_dssp HHHHHHHHHH-S
T ss_pred hHHHHhhhcccc
Confidence 888888888765
No 71
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=69.12 E-value=26 Score=33.44 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=28.2
Q ss_pred CCcEEEEEEEEeeCCCcE-----E---EeCCc-chHHHHHHHHHHHhhCCCceEEEEE
Q 037639 48 LFTHLFCAFADLDSQNFQ-----V---TVSSE-NQAIFSSFTRTVQQKNPAVKALLSI 96 (361)
Q Consensus 48 ~~thii~~~~~v~~~~~~-----~---~~~~~-~~~~~~~~~~~lk~~~~~~kvllsi 96 (361)
..--|+.....+++.+.. . ...++ .-..++++++.+|+. +.++++-|
T Consensus 48 G~GlIi~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~k~l~davh~~--G~~i~~QL 103 (382)
T cd02931 48 GTGLIITGVTMVDNEIEQFPMPSLPCPTYNPTAFIRTAKEMTERVHAY--GTKIFLQL 103 (382)
T ss_pred CCCEEEEEEEEeCCcccccCCCCccccccCCHHHhHHHHHHHHHHHHc--CCEEEEEc
Confidence 345566666666654311 1 11121 135678888888877 88999887
No 72
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=68.05 E-value=21 Score=33.21 Aligned_cols=59 Identities=14% Similarity=0.304 Sum_probs=38.8
Q ss_pred CCCceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc------------cchhhHHHHH
Q 037639 87 NPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN------------AQMSDFGTLL 154 (361)
Q Consensus 87 ~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~------------~~~~~~~~~l 154 (361)
.....+.+.|+|.+ .+.|. ..+..+.++|+|+|||+.--|.. .+.+...+++
T Consensus 52 ~~e~p~~vQl~g~~--p~~~~--------------~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv 115 (318)
T TIGR00742 52 PEESPVALQLGGSD--PNDLA--------------KCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCV 115 (318)
T ss_pred CCCCcEEEEEccCC--HHHHH--------------HHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHH
Confidence 34567889999864 22222 23445566899999999976643 4555566777
Q ss_pred HHHHHHH
Q 037639 155 TEWRSAV 161 (361)
Q Consensus 155 ~~l~~~l 161 (361)
+++++.+
T Consensus 116 ~av~~~~ 122 (318)
T TIGR00742 116 KAMQEAV 122 (318)
T ss_pred HHHHHHh
Confidence 7777665
No 73
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=67.69 E-value=43 Score=32.43 Aligned_cols=68 Identities=13% Similarity=0.139 Sum_probs=42.0
Q ss_pred HHHHHHHhhCCCceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc-----------cc
Q 037639 78 SFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN-----------AQ 146 (361)
Q Consensus 78 ~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~-----------~~ 146 (361)
+.+..+++..+...+++||.|... .+. + ...+..+++.++|+|+|++-.|.. .+
T Consensus 88 ~~~~~~~~~~~~~p~i~si~g~~~-~~~-------------~-~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~ 152 (420)
T PRK08318 88 REIRRVKRDYPDRALIASIMVECN-EEE-------------W-KEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQV 152 (420)
T ss_pred HHHHHHHhhCCCceEEEEeccCCC-HHH-------------H-HHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCC
Confidence 333345554455668899987511 111 2 234455567789999999988762 35
Q ss_pred hhhHHHHHHHHHHH
Q 037639 147 MSDFGTLLTEWRSA 160 (361)
Q Consensus 147 ~~~~~~~l~~l~~~ 160 (361)
.+.+.++++++++.
T Consensus 153 ~~~~~~i~~~v~~~ 166 (420)
T PRK08318 153 PELVEMYTRWVKRG 166 (420)
T ss_pred HHHHHHHHHHHHhc
Confidence 55666667766665
No 74
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=67.57 E-value=30 Score=35.61 Aligned_cols=95 Identities=13% Similarity=0.052 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecccccc--cCC---CChhhHhccCCeEEeeeeccCCCCCCCCCCCCCC
Q 037639 149 DFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYF--GAI---NPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGP 223 (361)
Q Consensus 149 ~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~--~~~---~~~~~l~~~vD~v~lm~yd~~~~~~~~~~~~~~~ 223 (361)
.+..|-.+|+..+++.. .+.+...--+.+.+-.. ... -++....+..|++-+|++-+. . +...+
T Consensus 513 ~l~~f~~~l~~~v~~~~----~~~~~tarni~a~~~l~p~~e~w~aQ~l~~~~~~yD~~a~mampym-e------~~~~~ 581 (671)
T PRK14582 513 ALTDFTLELSARVKAIR----GPQVKTARNIFALPVIQPESEAWFAQNLDDFLKSYDWTAPMAMPLM-E------GVAEK 581 (671)
T ss_pred HHHHHHHHHHHHHHhhc----CccceeeccccccccCChhHHHHHHhHHHHHHhhcchhhhhcchhh-h------ccCcc
Confidence 34678888888877641 11122222222221110 111 267788889999999995444 1 11101
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHcCCCCCceEEeccccc
Q 037639 224 PAALFSPDRSQVSGDSGIRAWIQSGLSPKKIVLGFPFFG 262 (361)
Q Consensus 224 ~spl~~~~~~~~~~~~~~~~~~~~g~~~~KivlGlp~yG 262 (361)
. ...++...++...+.-...+|+|+-+...-
T Consensus 582 -~-------~~~wl~~l~~~v~~~~~~~~k~vfelq~~d 612 (671)
T PRK14582 582 -S-------SDAWLIQLVNQVKNIPGALDKTIFELQARD 612 (671)
T ss_pred -c-------HHHHHHHHHHHHHhcCCcccceEEEeeccc
Confidence 0 234566667666655457799999988743
No 75
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=67.40 E-value=38 Score=31.32 Aligned_cols=78 Identities=13% Similarity=0.174 Sum_probs=47.9
Q ss_pred eCCcchHHHHHHHHHHHhhCCCceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCC-CcEEEeeecCCCc--
Q 037639 68 VSSENQAIFSSFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLN-FHGLDIDWEYPDN-- 144 (361)
Q Consensus 68 ~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~-~DGidiD~e~~~~-- 144 (361)
+++...+.+.+.+..+++..++..++.||.|.+ .+.|. .+++.++..+ .|.|+|++--|..
T Consensus 71 l~n~g~~~~~~~i~~~~~~~~~~pvI~Si~G~~--~~~~~--------------~~a~~~~~~g~ad~iElN~ScPn~~~ 134 (310)
T PRK02506 71 LPNLGFDYYLDYVLELQKKGPNKPHFLSVVGLS--PEETH--------------TILKKIQASDFNGLVELNLSCPNVPG 134 (310)
T ss_pred CCCcCHHHHHHHHHHHHhhcCCCCEEEEEEeCc--HHHHH--------------HHHHHHhhcCCCCEEEEECCCCCCCC
Confidence 444445555555555565545688999997753 23332 2234455677 7999999987633
Q ss_pred -----cchhhHHHHHHHHHHHH
Q 037639 145 -----AQMSDFGTLLTEWRSAV 161 (361)
Q Consensus 145 -----~~~~~~~~~l~~l~~~l 161 (361)
.+.+.+.++++.+|+..
T Consensus 135 ~~~~g~d~~~~~~i~~~v~~~~ 156 (310)
T PRK02506 135 KPQIAYDFETTEQILEEVFTYF 156 (310)
T ss_pred ccccccCHHHHHHHHHHHHHhc
Confidence 24455666777776654
No 76
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=67.12 E-value=19 Score=33.76 Aligned_cols=58 Identities=17% Similarity=0.347 Sum_probs=36.3
Q ss_pred CCceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc------------cchhhHHHHHH
Q 037639 88 PAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN------------AQMSDFGTLLT 155 (361)
Q Consensus 88 ~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~------------~~~~~~~~~l~ 155 (361)
....+.+.|+|.+. +.|. ..+..+++.|+|||||+.--|.. .+.+...++++
T Consensus 63 ~e~p~~vQl~g~~p--~~~~--------------~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~ 126 (333)
T PRK11815 63 EEHPVALQLGGSDP--ADLA--------------EAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVK 126 (333)
T ss_pred CCCcEEEEEeCCCH--HHHH--------------HHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHH
Confidence 35678899998642 2222 23456677899999999876643 23344455555
Q ss_pred HHHHHH
Q 037639 156 EWRSAV 161 (361)
Q Consensus 156 ~l~~~l 161 (361)
++++++
T Consensus 127 avr~~v 132 (333)
T PRK11815 127 AMKDAV 132 (333)
T ss_pred HHHHHc
Confidence 555544
No 77
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=67.00 E-value=39 Score=31.58 Aligned_cols=77 Identities=13% Similarity=0.166 Sum_probs=44.7
Q ss_pred eCCcchHHHHHHHHHHHhhCCCceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc-c-
Q 037639 68 VSSENQAIFSSFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN-A- 145 (361)
Q Consensus 68 ~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~-~- 145 (361)
+++...+.+.+.+..++++ .++.++++|+|.+. +. + ..++..+++.|+|+|+|++-.|.. .
T Consensus 81 l~n~g~d~~~~~i~~~~~~-~~~pvi~sI~g~~~--~e-------------~-~~~a~~~~~agad~ielN~scpp~~~~ 143 (334)
T PRK07565 81 KFYVGPEEYLELIRRAKEA-VDIPVIASLNGSSA--GG-------------W-VDYARQIEQAGADALELNIYYLPTDPD 143 (334)
T ss_pred ccCcCHHHHHHHHHHHHHh-cCCcEEEEeccCCH--HH-------------H-HHHHHHHHHcCCCEEEEeCCCCCCCCC
Confidence 3444455555565555543 36889999988531 21 1 234555667789999999865332 1
Q ss_pred -----chhhHHHHHHHHHHHH
Q 037639 146 -----QMSDFGTLLTEWRSAV 161 (361)
Q Consensus 146 -----~~~~~~~~l~~l~~~l 161 (361)
..+.+.++++++++..
T Consensus 144 ~~g~~~~~~~~eil~~v~~~~ 164 (334)
T PRK07565 144 ISGAEVEQRYLDILRAVKSAV 164 (334)
T ss_pred CccccHHHHHHHHHHHHHhcc
Confidence 1123555666665543
No 78
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=66.95 E-value=77 Score=31.85 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCCcEEEeee-cCCCc------cchhhHHHHHHHHHHHHHHH
Q 037639 112 QAASRKSFIDSSINLARSLNFHGLDIDW-EYPDN------AQMSDFGTLLTEWRSAVAAE 164 (361)
Q Consensus 112 ~~~~r~~f~~~l~~~l~~~~~DGidiD~-e~~~~------~~~~~~~~~l~~l~~~l~~~ 164 (361)
+++.|+.+++.+..+++ .|+||+-||- .+... .+...-..|++++++.+++.
T Consensus 172 np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v~~~ 230 (539)
T TIGR02456 172 NPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMVDRE 230 (539)
T ss_pred CHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHHHHh
Confidence 57778888877777776 8999999994 32211 11122346888888888764
No 79
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=66.03 E-value=31 Score=35.79 Aligned_cols=85 Identities=14% Similarity=0.196 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHhhCCCceEEEEEcC-CCCC--------------c-----------hhH--------HHHhcCHHHHHH
Q 037639 73 QAIFSSFTRTVQQKNPAVKALLSIGG-GNAS--------------K-----------ESF--------AAMASQAASRKS 118 (361)
Q Consensus 73 ~~~~~~~~~~lk~~~~~~kvllsigg-~~~~--------------~-----------~~~--------~~~~~~~~~r~~ 118 (361)
...++++++.+|++ |++|++-+=- .+.. . ..+ .--..++..|+-
T Consensus 244 ~~efk~LV~~~H~~--GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~ 321 (688)
T TIGR02100 244 VAEFKTMVRALHDA--GIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQM 321 (688)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHH
Confidence 35689999999998 9999975411 0000 0 000 001235677888
Q ss_pred HHHHHHHHHHcCCCcEEEeeecCCCc---cchhhHHHHHHHHHH
Q 037639 119 FIDSSINLARSLNFHGLDIDWEYPDN---AQMSDFGTLLTEWRS 159 (361)
Q Consensus 119 f~~~l~~~l~~~~~DGidiD~e~~~~---~~~~~~~~~l~~l~~ 159 (361)
+++++.-|++++++||+-||.-..-. ........|+++|+.
T Consensus 322 i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~ 365 (688)
T TIGR02100 322 VMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQ 365 (688)
T ss_pred HHHHHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHh
Confidence 88888889999999999999742211 112234566777765
No 80
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=65.42 E-value=51 Score=26.20 Aligned_cols=59 Identities=10% Similarity=0.124 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhhCCCceEEEEEcCCCCCchhHHHHhc-CHHHHHHHHHHHHHHHHcCCCcEEEe
Q 037639 74 AIFSSFTRTVQQKNPAVKALLSIGGGNASKESFAAMAS-QAASRKSFIDSSINLARSLNFHGLDI 137 (361)
Q Consensus 74 ~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~-~~~~r~~f~~~l~~~l~~~~~DGidi 137 (361)
..+.-+++.+++. |+++++-|--- ...|...+. +.+.|+.+.+.|...++++||.=+|+
T Consensus 36 ~Dl~l~L~~~k~~--g~~~lfVi~Pv---Ng~wydytG~~~~~r~~~y~kI~~~~~~~gf~v~D~ 95 (130)
T PF04914_consen 36 DDLQLLLDVCKEL--GIDVLFVIQPV---NGKWYDYTGLSKEMRQEYYKKIKYQLKSQGFNVADF 95 (130)
T ss_dssp HHHHHHHHHHHHT--T-EEEEEE-------HHHHHHTT--HHHHHHHHHHHHHHHHTTT--EEE-
T ss_pred HHHHHHHHHHHHc--CCceEEEecCC---cHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEec
Confidence 3456667778888 78888665443 344555444 77999999999999999999966666
No 81
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=65.16 E-value=1.2e+02 Score=28.15 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=28.4
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCC
Q 037639 111 SQAASRKSFIDSSINLARSLNFHGLDIDWEYPD 143 (361)
Q Consensus 111 ~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~ 143 (361)
.+++.|+-+.+.+..++.+.|+||+=+|+-.|.
T Consensus 130 tnp~a~~ww~~~~~~~~~~~gvdg~w~D~~Ep~ 162 (317)
T cd06600 130 TNPDTREWWAGLFSEWLNSQGVDGIWLDMNEPS 162 (317)
T ss_pred CChHHHHHHHHHHHHHhhcCCCceEEeeCCCCc
Confidence 588899989888888888999999999996664
No 82
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=65.14 E-value=13 Score=37.82 Aligned_cols=82 Identities=16% Similarity=0.164 Sum_probs=35.2
Q ss_pred HHHHHHHhhCCCceEEE---EEcCCCCCchhHHHHhcCHHHHHHH-HHHHHHHHHcCCCcEEEeeecCCCccchhhHHHH
Q 037639 78 SFTRTVQQKNPAVKALL---SIGGGNASKESFAAMASQAASRKSF-IDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTL 153 (361)
Q Consensus 78 ~~~~~lk~~~~~~kvll---sigg~~~~~~~~~~~~~~~~~r~~f-~~~l~~~l~~~~~DGidiD~e~~~~~~~~~~~~~ 153 (361)
.+++.+|++||++|+.. +.=||-.+ .+..-..++...... ++-|...-+. .|++|||-.+-. ++..=...
T Consensus 116 ~L~~eAKkrNP~ikl~~L~W~~PgW~~~--g~~~~~~~~~~~a~Y~~~wl~ga~~~---~gl~idYvg~~N-Er~~~~~~ 189 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYGLPWGFPGWVGN--GWNWPYDNPQLTAYYVVSWLLGAKKT---HGLDIDYVGIWN-ERGFDVNY 189 (669)
T ss_dssp HHHHHHHHH-TT-EEEEEES-B-GGGGT--TSS-TTSSHHHHHHHHHHHHHHHHHH---H-----EE-S-T-TS---HHH
T ss_pred hhHHHHHhhCCCCeEEEeccCCCccccC--CCCCcccchhhhhHHHHHHHHHHHHH---hCCCceEechhh-ccCCChhH
Confidence 35668999999999883 22233221 111111122222222 2222222244 456777765433 33333578
Q ss_pred HHHHHHHHHHHH
Q 037639 154 LTEWRSAVAAEA 165 (361)
Q Consensus 154 l~~l~~~l~~~~ 165 (361)
++.||..|+.++
T Consensus 190 ik~lr~~l~~~g 201 (669)
T PF02057_consen 190 IKWLRKALNSNG 201 (669)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHhhcc
Confidence 899999998875
No 83
>PRK03705 glycogen debranching enzyme; Provisional
Probab=64.65 E-value=22 Score=36.60 Aligned_cols=65 Identities=14% Similarity=0.175 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhCCCceEEEEEcC-CCCC----c----------h------------hH-----HHHhcCHHHHHHHHH
Q 037639 74 AIFSSFTRTVQQKNPAVKALLSIGG-GNAS----K----------E------------SF-----AAMASQAASRKSFID 121 (361)
Q Consensus 74 ~~~~~~~~~lk~~~~~~kvllsigg-~~~~----~----------~------------~~-----~~~~~~~~~r~~f~~ 121 (361)
..++++++.+|++ |++|++=+=- .+.. . . .| .--..++..|+-+++
T Consensus 242 ~efk~LV~~~H~~--GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid 319 (658)
T PRK03705 242 DEFRDAVKALHKA--GIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAID 319 (658)
T ss_pred HHHHHHHHHHHHC--CCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHH
Confidence 4688999999988 9999975411 1100 0 0 00 011236778889999
Q ss_pred HHHHHHHcCCCcEEEeeec
Q 037639 122 SSINLARSLNFHGLDIDWE 140 (361)
Q Consensus 122 ~l~~~l~~~~~DGidiD~e 140 (361)
++.-|++++++||+-||.-
T Consensus 320 ~l~~W~~e~gVDGFRfD~a 338 (658)
T PRK03705 320 CLRYWVETCHVDGFRFDLA 338 (658)
T ss_pred HHHHHHHHhCCCEEEEEcH
Confidence 9999999999999999963
No 84
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=64.59 E-value=28 Score=33.15 Aligned_cols=91 Identities=12% Similarity=0.116 Sum_probs=49.2
Q ss_pred CCcEEEEEEEEeeCCCc-----EEEe-CCcchHHHHHHHHHHHhhCCCceEEEEEcCCCCCch-------hH--------
Q 037639 48 LFTHLFCAFADLDSQNF-----QVTV-SSENQAIFSSFTRTVQQKNPAVKALLSIGGGNASKE-------SF-------- 106 (361)
Q Consensus 48 ~~thii~~~~~v~~~~~-----~~~~-~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~-------~~-------- 106 (361)
.+.-||.....+.+++. .+.+ ++..-..++++++.+|+. +.|+++-|.-.+.... .+
T Consensus 51 G~GLIi~e~~~V~~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~--G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~ 128 (370)
T cd02929 51 GWGVVNTEQCSIHPSSDDTPRISARLWDDGDIRNLAAMTDAVHKH--GALAGIELWHGGAHAPNRESRETPLGPSQLPSE 128 (370)
T ss_pred CceEEEEeeeEEccccccCcccCcCcCCHHHHHHHHHHHHHHHHC--CCeEEEecccCCCCCCccCCCCCccCCCCCCCC
Confidence 45566666666665541 1112 222346678888888877 8888877732211000 00
Q ss_pred --------HHHhcCH---HHHHHHHHHHHHHHHcCCCcEEEeeecC
Q 037639 107 --------AAMASQA---ASRKSFIDSSINLARSLNFHGLDIDWEY 141 (361)
Q Consensus 107 --------~~~~~~~---~~r~~f~~~l~~~l~~~~~DGidiD~e~ 141 (361)
.+.++.+ +..+.|++.. ..+++-|||||+|.--+
T Consensus 129 ~~~~~~~~p~~mt~~eI~~ii~~f~~AA-~ra~~aGfDgVEih~ah 173 (370)
T cd02929 129 FPTGGPVQAREMDKDDIKRVRRWYVDAA-LRARDAGFDIVYVYAAH 173 (370)
T ss_pred ccccCCCCCccCCHHHHHHHHHHHHHHH-HHHHHcCCCEEEEcccc
Confidence 0111111 2445666544 45566799999998654
No 85
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=64.34 E-value=32 Score=32.31 Aligned_cols=77 Identities=9% Similarity=0.135 Sum_probs=45.3
Q ss_pred HHHHHHHHHhhCCCceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc------cchhh
Q 037639 76 FSSFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN------AQMSD 149 (361)
Q Consensus 76 ~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~------~~~~~ 149 (361)
...+++.+++...++.+++||+|.... ..+..-+.|+..+.. +.. +.|+++|++--|.. ++.+.
T Consensus 124 ~~~~~~~l~~~~~~~pvivsI~~~~~~--------~~~~~~~d~~~~~~~-~~~-~ad~lelN~scP~~~g~~~~~~~~~ 193 (344)
T PRK05286 124 ADALAERLKKAYRGIPLGINIGKNKDT--------PLEDAVDDYLICLEK-LYP-YADYFTVNISSPNTPGLRDLQYGEA 193 (344)
T ss_pred HHHHHHHHHHhcCCCcEEEEEecCCCC--------CcccCHHHHHHHHHH-HHh-hCCEEEEEccCCCCCCcccccCHHH
Confidence 334444444432568899999985320 001122233333333 333 48999999876643 46677
Q ss_pred HHHHHHHHHHHHH
Q 037639 150 FGTLLTEWRSAVA 162 (361)
Q Consensus 150 ~~~~l~~l~~~l~ 162 (361)
+.++++++|+..+
T Consensus 194 ~~eiv~aVr~~~~ 206 (344)
T PRK05286 194 LDELLAALKEAQA 206 (344)
T ss_pred HHHHHHHHHHHHh
Confidence 7888888888776
No 86
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=64.02 E-value=1.1e+02 Score=28.64 Aligned_cols=90 Identities=9% Similarity=0.112 Sum_probs=48.8
Q ss_pred CCcEEEEEEEEeeCCCc----EEEeC-CcchHHHHHHHHHHHhhCCCceEEEEEcCCCCCch-----------------h
Q 037639 48 LFTHLFCAFADLDSQNF----QVTVS-SENQAIFSSFTRTVQQKNPAVKALLSIGGGNASKE-----------------S 105 (361)
Q Consensus 48 ~~thii~~~~~v~~~~~----~~~~~-~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~-----------------~ 105 (361)
.+.-|+.....+++.+. .+.+. +..-..++++...+|+. +.++++.|...+.... .
T Consensus 50 G~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~l~d~vh~~--G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~ 127 (337)
T PRK13523 50 QVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHKLVTFIHDH--GAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSK 127 (337)
T ss_pred CCeEEEECCeEECccccCCCCceecCCHHHHHHHHHHHHHHHhc--CCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCC
Confidence 45666666666665431 12222 22335677888788876 8888887733221100 0
Q ss_pred HHHHhcCH---HHHHHHHHHHHHHHHcCCCcEEEeeec
Q 037639 106 FAAMASQA---ASRKSFIDSSINLARSLNFHGLDIDWE 140 (361)
Q Consensus 106 ~~~~~~~~---~~r~~f~~~l~~~l~~~~~DGidiD~e 140 (361)
..+.++.+ +..+.|++.. ..+++-|||||+|.--
T Consensus 128 ~p~~mt~eeI~~ii~~f~~aA-~~a~~aGfDgVeih~a 164 (337)
T PRK13523 128 TPVEMTKEQIKETVLAFKQAA-VRAKEAGFDVIEIHGA 164 (337)
T ss_pred CCCcCCHHHHHHHHHHHHHHH-HHHHHcCCCEEEEccc
Confidence 00111111 3445566544 4556679999999765
No 87
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=63.86 E-value=20 Score=33.79 Aligned_cols=88 Identities=11% Similarity=0.147 Sum_probs=47.0
Q ss_pred CcEEEEEEEEeeCCCc----EEE-eCCcchHHHHHHHHHHHhhCCCceEEEEEcCCCC--Cch------h----------
Q 037639 49 FTHLFCAFADLDSQNF----QVT-VSSENQAIFSSFTRTVQQKNPAVKALLSIGGGNA--SKE------S---------- 105 (361)
Q Consensus 49 ~thii~~~~~v~~~~~----~~~-~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~--~~~------~---------- 105 (361)
.--||-....+++.+. .+. .++..-..+++++..+|+. +.++++-|.-.+. ... .
T Consensus 48 ~glIi~e~~~v~~~~~~~~~~~~~~~d~~i~~~~~l~~~vh~~--G~~i~~QL~h~G~~~~~~~~~~~~~~~ps~~~~~~ 125 (353)
T cd04735 48 VGMVITGATYVSPSGIGFEGGFSADDDSDIPGLRKLAQAIKSK--GAKAILQIFHAGRMANPALVPGGDVVSPSAIAAFR 125 (353)
T ss_pred CCEEEECceEECcccCcCCCCceecChhhhHHHHHHHHHHHhC--CCeEEEEecCCCCCCCccccCCCceecCCCCcccC
Confidence 3345555555554431 111 2233446788888888887 7888877733211 000 0
Q ss_pred ----HHHHhcC---HHHHHHHHHHHHHHHHcCCCcEEEeee
Q 037639 106 ----FAAMASQ---AASRKSFIDSSINLARSLNFHGLDIDW 139 (361)
Q Consensus 106 ----~~~~~~~---~~~r~~f~~~l~~~l~~~~~DGidiD~ 139 (361)
..+.++. .+..+.|++.... +++-|||||+|..
T Consensus 126 ~~~~~p~~mt~~eI~~ii~~f~~aA~~-a~~aGfDgVeih~ 165 (353)
T cd04735 126 PGAHTPRELTHEEIEDIIDAFGEATRR-AIEAGFDGVEIHG 165 (353)
T ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHH-HHHcCCCEEEEcc
Confidence 0011111 1344566655444 5668999999985
No 88
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=63.00 E-value=30 Score=31.12 Aligned_cols=53 Identities=23% Similarity=0.184 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhCCCceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc
Q 037639 75 IFSSFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN 144 (361)
Q Consensus 75 ~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~ 144 (361)
...++++.||++ ++|+++.+--. .|+-+.+.+.+++.+.|+||+=+|.-.|..
T Consensus 67 dp~~~i~~l~~~--g~~~~~~~~P~---------------v~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~ 119 (265)
T cd06589 67 NPKSMIDELHDN--GVKLVLWIDPY---------------IREWWAEVVKKLLVSLGVDGFWTDMGEPSP 119 (265)
T ss_pred CHHHHHHHHHHC--CCEEEEEeChh---------------HHHHHHHHHHHhhccCCCCEEeccCCCCCc
Confidence 356788889987 99999987431 166677777777788999999999866543
No 89
>PLN02877 alpha-amylase/limit dextrinase
Probab=62.80 E-value=41 Score=36.13 Aligned_cols=66 Identities=12% Similarity=0.199 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhCCCceEEEEE-cCCCCC------chhHHH------------------------HhcCHHHHHHHHHHH
Q 037639 75 IFSSFTRTVQQKNPAVKALLSI-GGGNAS------KESFAA------------------------MASQAASRKSFIDSS 123 (361)
Q Consensus 75 ~~~~~~~~lk~~~~~~kvllsi-gg~~~~------~~~~~~------------------------~~~~~~~r~~f~~~l 123 (361)
.++++++.++++ |++|++-+ -..... ...+.. ....+.-|+-+++++
T Consensus 467 efk~mV~~lH~~--GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl 544 (970)
T PLN02877 467 EFRKMVQALNRI--GLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDDL 544 (970)
T ss_pred HHHHHHHHHHHC--CCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHHH
Confidence 488888888887 99999764 111100 000100 112245677789999
Q ss_pred HHHHHcCCCcEEEeeecCC
Q 037639 124 INLARSLNFHGLDIDWEYP 142 (361)
Q Consensus 124 ~~~l~~~~~DGidiD~e~~ 142 (361)
.-|+++|++||.-||.-..
T Consensus 545 ~yW~~ey~VDGFRFDlmg~ 563 (970)
T PLN02877 545 LNWAVNYKVDGFRFDLMGH 563 (970)
T ss_pred HHHHHHhCCCEEEEEcccc
Confidence 9999999999999998643
No 90
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=62.51 E-value=1.6e+02 Score=30.45 Aligned_cols=195 Identities=13% Similarity=0.086 Sum_probs=103.3
Q ss_pred CCCcEEEE-EEEEeeCCCc--EEEeCCcc----hHHHHHHHHHHHhhCCCceEE--EEEcCCCCCc-h------------
Q 037639 47 ILFTHLFC-AFADLDSQNF--QVTVSSEN----QAIFSSFTRTVQQKNPAVKAL--LSIGGGNASK-E------------ 104 (361)
Q Consensus 47 ~~~thii~-~~~~v~~~~~--~~~~~~~~----~~~~~~~~~~lk~~~~~~kvl--lsigg~~~~~-~------------ 104 (361)
-.++||++ +|...+.+|. .+++++.. .+.|.+..=.|+.+. ++||. +.+-++.... .
T Consensus 346 ~~~~~VyLqafadp~gdg~~~~lYFpnr~lPmraDlfnrvawql~tR~-~v~vyAWmpvl~~~l~~~~~~~~~~~~~~~~ 424 (672)
T PRK14581 346 LRVTHVFLQAFSDPKGDGNIRQVYFPNRWIPMRQDLFNRVVWQLASRP-DVEVYAWMPVLAFDMDPSLPRITRIDPKTGK 424 (672)
T ss_pred cCCCEEEEEeeeCCCCCCceeeEEecCCcccHHHhhhhHHHHHHHhhh-CceEEEeeehhhccCCcccchhhhcccccCc
Confidence 35899998 4555554442 36677653 233444422455543 67776 3333321100 0
Q ss_pred ------hHHHHhcCHHHHHHHHHHHHHHHHcC-CCcEEEe-------eecCCCc-------------------c------
Q 037639 105 ------SFAAMASQAASRKSFIDSSINLARSL-NFHGLDI-------DWEYPDN-------------------A------ 145 (361)
Q Consensus 105 ------~~~~~~~~~~~r~~f~~~l~~~l~~~-~~DGidi-------D~e~~~~-------------------~------ 145 (361)
.+.++--=.....+.+.+|-.-|..| .||||=| |+|...+ .
T Consensus 425 ~~~~~~~y~rlspf~~~~~~~i~~iy~DLa~~~~~~GilfhDd~~l~d~ed~sp~a~~~y~~~gl~~~~~~~~~~~~~~~ 504 (672)
T PRK14581 425 TSIDPDQYRRLSPFNPEVRQRIIDIYRDMAYSAPIDGIIYHDDAVMSDFEDASPDAIRAYEKAGFPGSITTIRQDPEMMQ 504 (672)
T ss_pred cccCCCCccccCCCCHHHHHHHHHHHHHHHhcCCCCeEEeccccccccccccCHHHHHHHHhcCCCccHHhHhcCHHHHH
Confidence 01111111123346688898889887 7999977 4453321 0
Q ss_pred -----chhhHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecccccc--cCC---CChhhHhccCCeEEeeeeccCCCCCC
Q 037639 146 -----QMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYF--GAI---NPTSAISNSLDWTNVMAYDFFYNDDR 215 (361)
Q Consensus 146 -----~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~--~~~---~~~~~l~~~vD~v~lm~yd~~~~~~~ 215 (361)
....+..|-.+|+..+++.. .+.+...--+.+.+-.. ... -++....+..|++-+|+|-+..+.
T Consensus 505 ~w~~~k~~~l~~f~~~l~~~v~~~~----~p~~~tarniya~~~l~p~~~~w~aQ~l~~~~~~yD~~a~mamp~me~~-- 578 (672)
T PRK14581 505 RWTRYKSKYLIDFTNELTREVRDIR----GPQVKSARNIFAMPILEPESEAWFAQNLDDFLANYDWVAPMAMPLMEKV-- 578 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc----CccceehhcccccccCChhHHHHHHhHHHHHHhhcchhHHhhchhhhcc--
Confidence 12345678888888887641 11122222222221110 111 267788889999999998655111
Q ss_pred CCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHcCCCCCceEEecccc
Q 037639 216 TGSRITGPPAALFSPDRSQVSGDSGIRAWIQSGLSPKKIVLGFPFF 261 (361)
Q Consensus 216 ~~~~~~~~~spl~~~~~~~~~~~~~~~~~~~~g~~~~KivlGlp~y 261 (361)
. .+. +..+....++...+.-...+|+|+-+..-
T Consensus 579 -----~---~~~-----~~~w~~~l~~~v~~~~~~~~k~vfelQ~~ 611 (672)
T PRK14581 579 -----P---LSE-----SNEWLAELVNKVAQRPGALEKTVFELQSK 611 (672)
T ss_pred -----c---ccc-----HHHHHHHHHHHHHhcCCcccceEEEeecc
Confidence 1 011 23455666666554444679999998764
No 91
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=62.05 E-value=48 Score=30.51 Aligned_cols=65 Identities=9% Similarity=0.071 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhCCCceEEEEEcCCCC-CchhHHH-----------------------------HhcCHHHHHHHHHHHHH
Q 037639 76 FSSFTRTVQQKNPAVKALLSIGGGNA-SKESFAA-----------------------------MASQAASRKSFIDSSIN 125 (361)
Q Consensus 76 ~~~~~~~lk~~~~~~kvllsigg~~~-~~~~~~~-----------------------------~~~~~~~r~~f~~~l~~ 125 (361)
..++++.+|++ |+|+++.|--.-. ++..|.. =..+++.|+=+.+.+.+
T Consensus 72 p~~mi~~l~~~--G~k~~l~i~P~i~~~s~~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~ 149 (303)
T cd06592 72 PKGMIDQLHDL--GFRVTLWVHPFINTDSENFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKS 149 (303)
T ss_pred HHHHHHHHHHC--CCeEEEEECCeeCCCCHHHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHH
Confidence 56778888887 8888876633110 0111111 13478888888888888
Q ss_pred HHHcCCCcEEEeeecCC
Q 037639 126 LARSLNFHGLDIDWEYP 142 (361)
Q Consensus 126 ~l~~~~~DGidiD~e~~ 142 (361)
++.+.|+||+=+|+-.|
T Consensus 150 ~~~~~Gvdg~w~D~~E~ 166 (303)
T cd06592 150 LQEKYGIDSFKFDAGEA 166 (303)
T ss_pred HHHHhCCcEEEeCCCCc
Confidence 88899999999999655
No 92
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=60.59 E-value=93 Score=28.82 Aligned_cols=64 Identities=13% Similarity=0.105 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhCCCceEEEEEcCCC-CCc----------------------------hhHHHHhcCHHHHHHHHHHHHHH
Q 037639 76 FSSFTRTVQQKNPAVKALLSIGGGN-ASK----------------------------ESFAAMASQAASRKSFIDSSINL 126 (361)
Q Consensus 76 ~~~~~~~lk~~~~~~kvllsigg~~-~~~----------------------------~~~~~~~~~~~~r~~f~~~l~~~ 126 (361)
..++++.||++ ++|+++.+--.- .++ ..+-. ..+++.|+-+.+.+.+.
T Consensus 68 p~~mi~~L~~~--G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~D-ftnp~a~~w~~~~~~~~ 144 (319)
T cd06591 68 PKAMVRELHEM--NAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYD-ATNPEAREYYWKQLKKN 144 (319)
T ss_pred HHHHHHHHHHC--CCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccC-CCCHHHHHHHHHHHHHH
Confidence 45788889988 899887662110 001 11222 24778888888888888
Q ss_pred HHcCCCcEEEeeecCC
Q 037639 127 ARSLNFHGLDIDWEYP 142 (361)
Q Consensus 127 l~~~~~DGidiD~e~~ 142 (361)
+.+.|+||+=+|.-.|
T Consensus 145 ~~~~Gvdg~w~D~~Ep 160 (319)
T cd06591 145 YYDKGVDAWWLDAAEP 160 (319)
T ss_pred hhcCCCcEEEecCCCC
Confidence 9999999999998654
No 93
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=60.07 E-value=23 Score=33.63 Aligned_cols=87 Identities=10% Similarity=0.196 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhCCCceEEEEEcCCC----------CCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc-
Q 037639 76 FSSFTRTVQQKNPAVKALLSIGGGN----------ASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN- 144 (361)
Q Consensus 76 ~~~~~~~lk~~~~~~kvllsigg~~----------~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~- 144 (361)
-+.|++.+|++ ++..++.+-... .+...-.. -..++..+.|+.=|+++++.+.=.||.|++-.|-.
T Consensus 106 QrwfL~~Ak~r--GV~~f~aFSNSPP~~MT~NG~~~g~~~~~~-NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NE 182 (384)
T PF14587_consen 106 QRWFLKAAKER--GVNIFEAFSNSPPWWMTKNGSASGGDDGSD-NLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNE 182 (384)
T ss_dssp HHHHHHHHHHT--T---EEEE-SSS-GGGSSSSSSB-S-SSS--SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-
T ss_pred HHHHHHHHHHc--CCCeEEEeecCCCHHHhcCCCCCCCCcccc-ccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCC
Confidence 34466677777 888888764321 00000011 11346677888777777766655788887643321
Q ss_pred --------------cchhhHHHHHHHHHHHHHHHH
Q 037639 145 --------------AQMSDFGTLLTEWRSAVAAEA 165 (361)
Q Consensus 145 --------------~~~~~~~~~l~~l~~~l~~~~ 165 (361)
-+.+...+|++.|+.+|.+.|
T Consensus 183 P~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~G 217 (384)
T PF14587_consen 183 PQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRG 217 (384)
T ss_dssp TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 255677899999999999986
No 94
>PRK14705 glycogen branching enzyme; Provisional
Probab=58.38 E-value=99 Score=34.38 Aligned_cols=91 Identities=12% Similarity=0.148 Sum_probs=60.4
Q ss_pred chHHHHHHHHHHHhhCCCceEEEEEcC-CCC---------Cc--------------hhHHH---HhcCHHHHHHHHHHHH
Q 037639 72 NQAIFSSFTRTVQQKNPAVKALLSIGG-GNA---------SK--------------ESFAA---MASQAASRKSFIDSSI 124 (361)
Q Consensus 72 ~~~~~~~~~~~lk~~~~~~kvllsigg-~~~---------~~--------------~~~~~---~~~~~~~r~~f~~~l~ 124 (361)
....++.+++.+|++ |++|++-+=- ... +. ..|.. -..+++.|+-+++++.
T Consensus 813 t~~dfk~lVd~~H~~--GI~VILD~V~nH~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~ 890 (1224)
T PRK14705 813 HPDEFRFLVDSLHQA--GIGVLLDWVPAHFPKDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANAL 890 (1224)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccCCcchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHH
Confidence 356799999999998 9999975411 000 00 00100 1246788899999999
Q ss_pred HHHHcCCCcEEEeeec-CC--------------Cc-cchhh--HHHHHHHHHHHHHHH
Q 037639 125 NLARSLNFHGLDIDWE-YP--------------DN-AQMSD--FGTLLTEWRSAVAAE 164 (361)
Q Consensus 125 ~~l~~~~~DGidiD~e-~~--------------~~-~~~~~--~~~~l~~l~~~l~~~ 164 (361)
-|+++|++||+-+|-- .. .. ..+++ =..|++++.+.++..
T Consensus 891 ~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~ 948 (1224)
T PRK14705 891 YWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKT 948 (1224)
T ss_pred HHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHH
Confidence 9999999999999862 11 00 11122 368999999888865
No 95
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=58.26 E-value=28 Score=33.40 Aligned_cols=69 Identities=10% Similarity=0.072 Sum_probs=44.0
Q ss_pred chHHHHHHHHHHHhhCCCceEEEEEcCC--CCCchh----------------------HHHHhcCHHHHHHHHHHHHHHH
Q 037639 72 NQAIFSSFTRTVQQKNPAVKALLSIGGG--NASKES----------------------FAAMASQAASRKSFIDSSINLA 127 (361)
Q Consensus 72 ~~~~~~~~~~~lk~~~~~~kvllsigg~--~~~~~~----------------------~~~~~~~~~~r~~f~~~l~~~l 127 (361)
.+.++..+++.++++ |+|+=|=+.-. +.+++. +.-=+++++.++-+.+.+.+++
T Consensus 102 FP~Gl~~l~~~i~~~--Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll 179 (394)
T PF02065_consen 102 FPNGLKPLADYIHSL--GMKFGLWFEPEMVSPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLL 179 (394)
T ss_dssp STTHHHHHHHHHHHT--T-EEEEEEETTEEESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHC--CCeEEEEeccccccchhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHH
Confidence 356788899899988 77766544110 000100 0011357888899999999999
Q ss_pred HcCCCcEEEeeecCC
Q 037639 128 RSLNFHGLDIDWEYP 142 (361)
Q Consensus 128 ~~~~~DGidiD~e~~ 142 (361)
+++|+|.|-+|+...
T Consensus 180 ~~~gidYiK~D~n~~ 194 (394)
T PF02065_consen 180 REWGIDYIKWDFNRD 194 (394)
T ss_dssp HHTT-SEEEEE-TS-
T ss_pred HhcCCCEEEeccccC
Confidence 999999999999753
No 96
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=56.68 E-value=93 Score=26.10 Aligned_cols=160 Identities=18% Similarity=0.216 Sum_probs=91.2
Q ss_pred eeecCCCc-cchhhHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecccccccCCCC---hhhHhccCCeEEeeeeccCCC
Q 037639 137 IDWEYPDN-AQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINP---TSAISNSLDWTNVMAYDFFYN 212 (361)
Q Consensus 137 iD~e~~~~-~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~---~~~l~~~vD~v~lm~yd~~~~ 212 (361)
||-..|.. +-..||.-.++++|+..+.. ..+|.++.--+.. ..--. +-....-+||+-+--|+.. +
T Consensus 24 iDVKNP~EGSLGANFPWvIr~i~Ev~p~d--------~~vSAT~GDvpYK-PGT~slAalGaav~GaDYiKVGLYg~k-n 93 (235)
T COG1891 24 IDVKNPAEGSLGANFPWVIREIREVVPED--------QEVSATVGDVPYK-PGTASLAALGAAVAGADYIKVGLYGTK-N 93 (235)
T ss_pred EeccCcccCcccCCChHHHHHHHHhCccc--------eeeeeeecCCCCC-CchHHHHHHHhHhhCCceEEEeecccc-c
Confidence 35566665 56689999999999987765 7888887532221 11111 2334556899988887544 1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHH-----cCCCCCceEEecccccccccccCCCCCCCCCCCccCCCCcc
Q 037639 213 DDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQ-----SGLSPKKIVLGFPFFGHSLQLANANNHGFWAPTSGVVNGGT 287 (361)
Q Consensus 213 ~~~~~~~~~~~~spl~~~~~~~~~~~~~~~~~~~-----~g~~~~KivlGlp~yG~~~~~~~~~~~~~~~~~~~~~~~g~ 287 (361)
-+++++.+.. .-++++|+|+.-. |+-.++ -++
T Consensus 94 ------------------------~~eA~e~m~~vvrAVkd~d~~k~VVAaG-YaDa~R------------------vgs 130 (235)
T COG1891 94 ------------------------EEEALEVMKNVVRAVKDFDPSKKVVAAG-YADAHR------------------VGS 130 (235)
T ss_pred ------------------------HHHHHHHHHHHHHHHhccCCCceEEecc-ccchhh------------------ccC
Confidence 1333333222 3378888887532 332222 123
Q ss_pred cchHHHHHHhhcCCcEEEEecceeeEEEEeCCEEEEECCHHHHHHHHHHHHHcCCceEEEeeecCC
Q 037639 288 MSYKEIRQFIMSTNATKVFNATVVSDYCYSGTTWIGYDDTQSVNTKVKYAKDNGLLGYFAWQISQD 353 (361)
Q Consensus 288 ~~y~~i~~~~~~~~~~~~~d~~~~~~y~~~~~~~i~y~d~~S~~~K~~~~~~~gl~Gv~iW~l~~D 353 (361)
++--.+.+...+.|....--++. .-+++..+-|.+..-+..-.+.++++||--...=++..+
T Consensus 131 v~Pl~~P~vaa~ag~DvaMvDTa----iKDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlAGs~~~e 192 (235)
T COG1891 131 VSPLLLPEVAAEAGADVAMVDTA----IKDGKSLFDFMDEEELEEFVDLAHEHGLEVALAGSLKFE 192 (235)
T ss_pred cCccccHHHHHhcCCCEEEEecc----cccchhHHhhhcHHHHHHHHHHHHHcchHHHhccccccc
Confidence 33334444444555543221111 013445677899999999999999999743333333333
No 97
>PLN02411 12-oxophytodienoate reductase
Probab=55.21 E-value=32 Score=32.98 Aligned_cols=46 Identities=11% Similarity=0.047 Sum_probs=26.6
Q ss_pred cEEEEEEEEeeCCCc----EEEe-CCcchHHHHHHHHHHHhhCCCceEEEEEc
Q 037639 50 THLFCAFADLDSQNF----QVTV-SSENQAIFSSFTRTVQQKNPAVKALLSIG 97 (361)
Q Consensus 50 thii~~~~~v~~~~~----~~~~-~~~~~~~~~~~~~~lk~~~~~~kvllsig 97 (361)
--||.....+++.+. .+.+ ++..-..++++++.+|+. +.|+++-|.
T Consensus 58 GLIIte~~~V~~~g~~~~~~~gi~~d~~i~~~~~l~~avH~~--G~~i~~QL~ 108 (391)
T PLN02411 58 GFLISEGTLISPTAPGFPHVPGIYSDEQVEAWKKVVDAVHAK--GSIIFCQLW 108 (391)
T ss_pred CEEEeCceEECcccCcCCCCCccCCHHHHHHHHHHHHHHHhc--CCEEEEecc
Confidence 345555555655431 1112 122336678888888877 888887773
No 98
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=52.76 E-value=64 Score=30.25 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=26.5
Q ss_pred EEEEEEEEeeCCCc----EEEeC-CcchHHHHHHHHHHHhhCCCceEEEEEcC
Q 037639 51 HLFCAFADLDSQNF----QVTVS-SENQAIFSSFTRTVQQKNPAVKALLSIGG 98 (361)
Q Consensus 51 hii~~~~~v~~~~~----~~~~~-~~~~~~~~~~~~~lk~~~~~~kvllsigg 98 (361)
-||.....+++.+. .+.+. +..-..++++.+.+|+. +.|+++-|.-
T Consensus 49 lIi~~~~~v~~~g~~~~~~~~l~~d~~i~~lr~la~~vh~~--ga~~~~QL~H 99 (338)
T cd02933 49 LIITEATQISPQGQGYPNTPGIYTDEQVEGWKKVTDAVHAK--GGKIFLQLWH 99 (338)
T ss_pred eEEeCceeeCccccCCCCCCccCCHHHHHHHHHHHHHHHhc--CCeEEEEccc
Confidence 34555556665541 11122 22335678888788877 8888877743
No 99
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=52.44 E-value=63 Score=33.53 Aligned_cols=91 Identities=11% Similarity=0.101 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhhCCCce---EEEEEcC-CCCCchhH---------------------H-----------HHhcCHHHHH
Q 037639 74 AIFSSFTRTVQQKNPAVK---ALLSIGG-GNASKESF---------------------A-----------AMASQAASRK 117 (361)
Q Consensus 74 ~~~~~~~~~lk~~~~~~k---vllsigg-~~~~~~~~---------------------~-----------~~~~~~~~r~ 117 (361)
.++..+++.+|++++++| |+-+|-| |++-+... . ..+-+++...
T Consensus 305 ~Glk~~v~~iK~~~~~vk~VyVWHAL~GYWGGv~P~~~~~~~~~~~~p~~spg~~~~~~d~~~d~~~~~g~glv~Pe~~~ 384 (777)
T PLN02711 305 KGMGAFIRDLKEEFKTVDYVYVWHALCGYWGGLRPNVPGLPESKVVAPKLSPGLKMTMEDLAVDKIVNNGVGLVPPELAY 384 (777)
T ss_pred CcHHHHHHHHHhhCCCCCEEEEeeeccCcccCcCCCCCCCccceeeccccCcccccccccccccccccCcccccCHHHHH
Confidence 478888999999887665 4456644 32211100 0 1124678889
Q ss_pred HHHHHHHHHHHcCCCcEEEeeecCCCc---cchhhHHHHHHHHHHHHHHH
Q 037639 118 SFIDSSINLARSLNFHGLDIDWEYPDN---AQMSDFGTLLTEWRSAVAAE 164 (361)
Q Consensus 118 ~f~~~l~~~l~~~~~DGidiD~e~~~~---~~~~~~~~~l~~l~~~l~~~ 164 (361)
+|-+.+-++|.+.|+|||-+|-+..-. ++...-+++.+...+++.+.
T Consensus 385 ~FY~~~hs~Las~GVDgVKVDvQ~~Le~l~~~~Ggrv~la~ay~~ALe~S 434 (777)
T PLN02711 385 QMYEGLHSHLQSVGIDGVKVDVIHLLEMLCEEYGGRVELAKAYYKALTAS 434 (777)
T ss_pred HHHHHHHHHHHHcCCCeEEEchhhhHhhhcccCCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999764311 22223345555555555544
No 100
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=52.30 E-value=59 Score=33.18 Aligned_cols=66 Identities=11% Similarity=0.216 Sum_probs=46.5
Q ss_pred chHHHHHHHHHHHhhCCCceEEEEE-cCCC---------CC--------------chhHHHHh---cCHHHHHHHHHHHH
Q 037639 72 NQAIFSSFTRTVQQKNPAVKALLSI-GGGN---------AS--------------KESFAAMA---SQAASRKSFIDSSI 124 (361)
Q Consensus 72 ~~~~~~~~~~~lk~~~~~~kvllsi-gg~~---------~~--------------~~~~~~~~---~~~~~r~~f~~~l~ 124 (361)
.++.+..||..++++ ++-|+|=+ =+.- ++ ...|...+ ...+.|.=|+.++.
T Consensus 212 tPedfk~fVD~aH~~--GIgViLD~V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal 289 (628)
T COG0296 212 TPEDFKALVDAAHQA--GIGVILDWVPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANAL 289 (628)
T ss_pred CHHHHHHHHHHHHHc--CCEEEEEecCCcCCCCcchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHH
Confidence 468899999999999 89998754 1100 00 11222222 24577888999999
Q ss_pred HHHHcCCCcEEEeee
Q 037639 125 NLARSLNFHGLDIDW 139 (361)
Q Consensus 125 ~~l~~~~~DGidiD~ 139 (361)
-+|.+|.+||+-+|-
T Consensus 290 ~Wl~~yHiDGlRvDA 304 (628)
T COG0296 290 YWLEEYHIDGLRVDA 304 (628)
T ss_pred HHHHHhCCcceeeeh
Confidence 999999999998874
No 101
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=52.14 E-value=61 Score=27.87 Aligned_cols=67 Identities=12% Similarity=-0.029 Sum_probs=41.3
Q ss_pred HHHHHcCCCcEEEeeecCCCccchhhHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecccccccCCCChhhHhccCCeEE
Q 037639 124 INLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTN 203 (361)
Q Consensus 124 ~~~l~~~~~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~ 203 (361)
++.+.+.|.|-|.+.+|. .....++++.+|+. | ....+++.+..... .++.+.+.+|+|.
T Consensus 73 i~~~~~~g~~~i~~H~E~-----~~~~~~~i~~ik~~----g-------~k~GialnP~T~~~----~~~~~l~~vD~Vl 132 (201)
T PF00834_consen 73 IEEFAEAGADYITFHAEA-----TEDPKETIKYIKEA----G-------IKAGIALNPETPVE----ELEPYLDQVDMVL 132 (201)
T ss_dssp HHHHHHHT-SEEEEEGGG-----TTTHHHHHHHHHHT----T-------SEEEEEE-TTS-GG----GGTTTGCCSSEEE
T ss_pred HHHHHhcCCCEEEEcccc-----hhCHHHHHHHHHHh----C-------CCEEEEEECCCCch----HHHHHhhhcCEEE
Confidence 344556689999999982 23455666666653 2 56777766543331 2455677899999
Q ss_pred eeeeccC
Q 037639 204 VMAYDFF 210 (361)
Q Consensus 204 lm~yd~~ 210 (361)
+|+-+..
T Consensus 133 vMsV~PG 139 (201)
T PF00834_consen 133 VMSVEPG 139 (201)
T ss_dssp EESS-TT
T ss_pred EEEecCC
Confidence 9997654
No 102
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=52.11 E-value=27 Score=31.20 Aligned_cols=50 Identities=28% Similarity=0.410 Sum_probs=30.8
Q ss_pred eEEeeeeccCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHH-cCCCCCceEEeccccccc
Q 037639 201 WTNVMAYDFFYNDDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQ-SGLSPKKIVLGFPFFGHS 264 (361)
Q Consensus 201 ~v~lm~yd~~~~~~~~~~~~~~~~spl~~~~~~~~~~~~~~~~~~~-~g~~~~KivlGlp~yG~~ 264 (361)
.+++|+||+. |. ...+|-++-.. ....++.+++.+.+ .| ++++|+| ||++
T Consensus 88 n~nv~~~DYS-Gy----G~S~G~psE~n----~y~Di~avye~Lr~~~g-~~~~Iil----~G~S 138 (258)
T KOG1552|consen 88 NCNVVSYDYS-GY----GRSSGKPSERN----LYADIKAVYEWLRNRYG-SPERIIL----YGQS 138 (258)
T ss_pred cceEEEEecc-cc----cccCCCccccc----chhhHHHHHHHHHhhcC-CCceEEE----EEec
Confidence 5789999998 75 44445555331 12445666665554 45 7777776 5554
No 103
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=51.71 E-value=68 Score=29.88 Aligned_cols=75 Identities=9% Similarity=0.121 Sum_probs=43.9
Q ss_pred HHHHHHHhhC-CCceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc------cchhhH
Q 037639 78 SFTRTVQQKN-PAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN------AQMSDF 150 (361)
Q Consensus 78 ~~~~~lk~~~-~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~------~~~~~~ 150 (361)
.++..+++.. .++.+++||+|... .. -++.-+.|++.+-. +.. ..|+|+|++--|.. ++.+.+
T Consensus 116 ~~~~~l~~~~~~~~plivsi~g~~~--~~------~~~~~~d~~~~~~~-~~~-~ad~ielN~scP~~~g~~~~~~~~~~ 185 (327)
T cd04738 116 AVAKRLKKRRPRGGPLGVNIGKNKD--TP------LEDAVEDYVIGVRK-LGP-YADYLVVNVSSPNTPGLRDLQGKEAL 185 (327)
T ss_pred HHHHHHHHhccCCCeEEEEEeCCCC--Cc------ccccHHHHHHHHHH-HHh-hCCEEEEECCCCCCCccccccCHHHH
Confidence 3444444433 36889999998642 11 01122233332222 233 38999999966643 456777
Q ss_pred HHHHHHHHHHHH
Q 037639 151 GTLLTEWRSAVA 162 (361)
Q Consensus 151 ~~~l~~l~~~l~ 162 (361)
.++++++|+...
T Consensus 186 ~~iv~av~~~~~ 197 (327)
T cd04738 186 RELLTAVKEERN 197 (327)
T ss_pred HHHHHHHHHHHh
Confidence 888888888765
No 104
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=50.65 E-value=1.3e+02 Score=27.54 Aligned_cols=88 Identities=11% Similarity=0.128 Sum_probs=49.9
Q ss_pred CceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcC--CCcEEEeeecCCCc--------cchhhHHHHHHHHH
Q 037639 89 AVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSL--NFHGLDIDWEYPDN--------AQMSDFGTLLTEWR 158 (361)
Q Consensus 89 ~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~--~~DGidiD~e~~~~--------~~~~~~~~~l~~l~ 158 (361)
+..++++|.|.+ .+.| ..+++.+++. ++|+|||++--|.. .+.+...++++++|
T Consensus 90 ~~pl~~qi~g~~--~~~~--------------~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr 153 (300)
T TIGR01037 90 PTPLIASVYGSS--VEEF--------------AEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVK 153 (300)
T ss_pred CCcEEEEeecCC--HHHH--------------HHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHH
Confidence 467999998753 1212 2344455543 38999999876653 34556667777777
Q ss_pred HHHHHHHHhcCCCceEEEEEeecccccccCCCCh-hhH-hccCCeEEee
Q 037639 159 SAVAAEARSSGKPALLLTAAVSYSANYFGAINPT-SAI-SNSLDWTNVM 205 (361)
Q Consensus 159 ~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~-~~l-~~~vD~v~lm 205 (361)
+..+ +.+++-+.+... . ...+ +.+ ..-+|.|++.
T Consensus 154 ~~~~----------~pv~vKi~~~~~--~-~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 154 DKTD----------VPVFAKLSPNVT--D-ITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred HhcC----------CCEEEECCCChh--h-HHHHHHHHHHcCCCEEEEE
Confidence 6542 456666553211 0 0111 222 2348999875
No 105
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=49.92 E-value=1.2e+02 Score=28.43 Aligned_cols=87 Identities=13% Similarity=0.069 Sum_probs=49.9
Q ss_pred chHHHHHHHHHHHhhCCCceEEEEEcCCCCCchhHHHHhcC--------HH-----HHHHHHHHHHHHHHcCCCcEEEee
Q 037639 72 NQAIFSSFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQ--------AA-----SRKSFIDSSINLARSLNFHGLDID 138 (361)
Q Consensus 72 ~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~--------~~-----~r~~f~~~l~~~l~~~~~DGidiD 138 (361)
..+.+.++.+++|++ |+|+-+-...+......+..-... +. -.+....++..++.+|..|.+=+|
T Consensus 136 krDiv~El~~A~rk~--Glk~G~Y~S~~dw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfD 213 (346)
T PF01120_consen 136 KRDIVGELADACRKY--GLKFGLYYSPWDWHHPDYPPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFD 213 (346)
T ss_dssp TS-HHHHHHHHHHHT--T-EEEEEEESSSCCCTTTTSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEE
T ss_pred CCCHHHHHHHHHHHc--CCeEEEEecchHhcCcccCCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEec
Confidence 346688899899998 888886655442111111110000 01 122556778888899999999999
Q ss_pred ecCCCccchhhHHHHHHHHHHH
Q 037639 139 WEYPDNAQMSDFGTLLTEWRSA 160 (361)
Q Consensus 139 ~e~~~~~~~~~~~~~l~~l~~~ 160 (361)
.-.+...+...+..+.+.+|+.
T Consensus 214 g~~~~~~~~~~~~~~~~~i~~~ 235 (346)
T PF01120_consen 214 GGWPDPDEDWDSAELYNWIRKL 235 (346)
T ss_dssp STTSCCCTHHHHHHHHHHHHHH
T ss_pred CCCCccccccCHHHHHHHHHHh
Confidence 8766544444445555544443
No 106
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=49.23 E-value=1.2e+02 Score=28.11 Aligned_cols=55 Identities=7% Similarity=0.102 Sum_probs=32.6
Q ss_pred cchHHHHHHHHHHHhhCCCceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCC
Q 037639 71 ENQAIFSSFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYP 142 (361)
Q Consensus 71 ~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~ 142 (361)
...+.+.+.+..+++ ..+..+++||.|.+ .+.| ..++..+++.|+|+|+|+.-.+
T Consensus 82 ~g~~~~~~~i~~~~~-~~~~pvi~si~g~~--~~~~--------------~~~a~~~~~~gad~iElN~s~~ 136 (325)
T cd04739 82 LGPEEYLELIRRAKR-AVSIPVIASLNGVS--AGGW--------------VDYARQIEEAGADALELNIYAL 136 (325)
T ss_pred cCHHHHHHHHHHHHh-ccCCeEEEEeCCCC--HHHH--------------HHHHHHHHhcCCCEEEEeCCCC
Confidence 333444444433433 23677899997742 2222 2345556677899999999753
No 107
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (2.4.1.82 from EC) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway [].
Probab=49.22 E-value=1.1e+02 Score=31.84 Aligned_cols=91 Identities=14% Similarity=0.151 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHhhCCCce---EEEEEcC-CCCCch---h-----------------------HHH------HhcCHHHH
Q 037639 73 QAIFSSFTRTVQQKNPAVK---ALLSIGG-GNASKE---S-----------------------FAA------MASQAASR 116 (361)
Q Consensus 73 ~~~~~~~~~~lk~~~~~~k---vllsigg-~~~~~~---~-----------------------~~~------~~~~~~~r 116 (361)
..++..+++.+|+++|++| |+.+|-| |++-+. . +.. -+-+++..
T Consensus 287 ~~GL~~~V~~ik~~~~~Ik~V~VWHAL~GYWgGi~P~~~~~~~~k~~~~~~spg~~~~~~d~~~d~~~~~g~glv~p~~~ 366 (747)
T PF05691_consen 287 PSGLKHFVSDIKEKFPGIKYVYVWHALCGYWGGISPDGMLAYNYKLVYPKLSPGLQGNMPDLAVDSIVKGGLGLVDPEDA 366 (747)
T ss_pred cccHHHHHHHHHhhCCCCCEEEEeehhcceecCcCCCCccccccceeecccCCcccccCccccccccccCcccccCHHHH
Confidence 3578899999999998775 4456644 322100 0 000 12467888
Q ss_pred HHHHHHHHHHHHcCCCcEEEeeecCCCc---cchhhHHHHHHHHHHHHHH
Q 037639 117 KSFIDSSINLARSLNFHGLDIDWEYPDN---AQMSDFGTLLTEWRSAVAA 163 (361)
Q Consensus 117 ~~f~~~l~~~l~~~~~DGidiD~e~~~~---~~~~~~~~~l~~l~~~l~~ 163 (361)
.+|-+..-++|++-|+|||-+|-+..-. .....-.++.+...+++.+
T Consensus 367 ~~FYd~~hsyL~s~GVDgVKVD~Q~~l~~l~~~~ggrv~la~ay~~AL~~ 416 (747)
T PF05691_consen 367 FRFYDDFHSYLASAGVDGVKVDVQAILETLGEGYGGRVELARAYQDALEA 416 (747)
T ss_pred HHHHHHHHHHHHHcCCCEEEEchhhhhhhhhccCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999875432 2223345555555555554
No 108
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=49.12 E-value=27 Score=23.18 Aligned_cols=41 Identities=12% Similarity=0.102 Sum_probs=24.2
Q ss_pred HHHHHHHHcCCCcEE-EeeecCCCccchhhHHHHHHHHHHHH
Q 037639 121 DSSINLARSLNFHGL-DIDWEYPDNAQMSDFGTLLTEWRSAV 161 (361)
Q Consensus 121 ~~l~~~l~~~~~DGi-diD~e~~~~~~~~~~~~~l~~l~~~l 161 (361)
..+++.|+..|+||. .|.||.+..+..+.+.+-++-||..+
T Consensus 3 ~~i~~~L~~~GYdG~~siE~ED~~~~~~~G~~~a~~~lr~~l 44 (55)
T PF07582_consen 3 KRIFSALREIGYDGWLSIEHEDALMDPEEGAREAAAFLRKLL 44 (55)
T ss_dssp HHHHHHHHHTT--SEEEE---STTTSHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHcCCCceEEEEeecCCCCHHHHHHHHHHHHHHhc
Confidence 357888999999996 58888766655566666666665543
No 109
>PLN03244 alpha-amylase; Provisional
Probab=48.82 E-value=1.8e+02 Score=30.72 Aligned_cols=65 Identities=11% Similarity=0.097 Sum_probs=45.7
Q ss_pred chHHHHHHHHHHHhhCCCceEEEEEcCC-C------------CCch-hHH--------------HHhcCHHHHHHHHHHH
Q 037639 72 NQAIFSSFTRTVQQKNPAVKALLSIGGG-N------------ASKE-SFA--------------AMASQAASRKSFIDSS 123 (361)
Q Consensus 72 ~~~~~~~~~~~lk~~~~~~kvllsigg~-~------------~~~~-~~~--------------~~~~~~~~r~~f~~~l 123 (361)
.+..+..++..++++ |++|+|-+--. . +... -|. --...++.|+-+++++
T Consensus 439 TPeDLK~LVD~aH~~--GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna 516 (872)
T PLN03244 439 TPDDFKRLVDEAHGL--GLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNL 516 (872)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHH
Confidence 356789999999998 99999865210 0 0000 011 0123467888899999
Q ss_pred HHHHHcCCCcEEEee
Q 037639 124 INLARSLNFHGLDID 138 (361)
Q Consensus 124 ~~~l~~~~~DGidiD 138 (361)
.-||.++++||+-+|
T Consensus 517 ~yWleEyhIDGFRfD 531 (872)
T PLN03244 517 NWWITEYQIDGFQFH 531 (872)
T ss_pred HHHHHHhCcCcceee
Confidence 999999999999998
No 110
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=48.12 E-value=86 Score=29.39 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=27.6
Q ss_pred hcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCC
Q 037639 110 ASQAASRKSFIDSSINLARSLNFHGLDIDWEYPD 143 (361)
Q Consensus 110 ~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~ 143 (361)
..+++.|+=+.+.+.+++.+.|+||+=+|+..|.
T Consensus 134 ftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~Ep~ 167 (339)
T cd06602 134 FLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNEPS 167 (339)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCcEEEecCCCCc
Confidence 3477888888777777888899999999997664
No 111
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=47.91 E-value=9.9 Score=29.25 Aligned_cols=19 Identities=32% Similarity=0.618 Sum_probs=14.2
Q ss_pred HHHHHHHcCCCCCceEEec
Q 037639 240 GIRAWIQSGLSPKKIVLGF 258 (361)
Q Consensus 240 ~~~~~~~~g~~~~KivlGl 258 (361)
.-+.++++|||++.||||+
T Consensus 79 Ia~eLve~GVpk~dIVLgF 97 (111)
T PF08869_consen 79 IAEELVEAGVPKEDIVLGF 97 (111)
T ss_dssp HHHHHHHTT--GGGEEETT
T ss_pred HHHHHHHcCCCHHHEEEcc
Confidence 3467889999999999995
No 112
>PRK01060 endonuclease IV; Provisional
Probab=47.48 E-value=41 Score=30.26 Aligned_cols=46 Identities=9% Similarity=0.056 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCCCcEEEeeecCCCcc-chhhHHHHHHHHHHHHHHHH
Q 037639 120 IDSSINLARSLNFHGLDIDWEYPDNA-QMSDFGTLLTEWRSAVAAEA 165 (361)
Q Consensus 120 ~~~l~~~l~~~~~DGidiD~e~~~~~-~~~~~~~~l~~l~~~l~~~~ 165 (361)
....++.+++.|||||+|..+.|... ....-...++++|+.+.+.|
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~g 60 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYG 60 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcC
Confidence 44678999999999999987755432 11223345777888777654
No 113
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=47.37 E-value=49 Score=34.59 Aligned_cols=65 Identities=6% Similarity=0.083 Sum_probs=44.7
Q ss_pred chHHHHHHHHHHHhhCCCceEEEEEcCC-----------CCC--c-hh-----------HH---HHhcCHHHHHHHHHHH
Q 037639 72 NQAIFSSFTRTVQQKNPAVKALLSIGGG-----------NAS--K-ES-----------FA---AMASQAASRKSFIDSS 123 (361)
Q Consensus 72 ~~~~~~~~~~~lk~~~~~~kvllsigg~-----------~~~--~-~~-----------~~---~~~~~~~~r~~f~~~l 123 (361)
....++.+++.++++ |++|++-+--. ..+ . .- |. --..+++.|+-+++++
T Consensus 298 tp~dlk~LVd~aH~~--GI~VilDvV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~ 375 (758)
T PLN02447 298 TPEDLKYLIDKAHSL--GLRVLMDVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNL 375 (758)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHH
Confidence 346789999999988 99999754110 000 0 00 10 0013567888899999
Q ss_pred HHHHHcCCCcEEEee
Q 037639 124 INLARSLNFHGLDID 138 (361)
Q Consensus 124 ~~~l~~~~~DGidiD 138 (361)
.-|+++|++||+-||
T Consensus 376 ~~Wl~ey~IDGfRfD 390 (758)
T PLN02447 376 RWWLEEYKFDGFRFD 390 (758)
T ss_pred HHHHHHhCccccccc
Confidence 999999999999998
No 114
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=46.93 E-value=84 Score=30.06 Aligned_cols=86 Identities=9% Similarity=-0.013 Sum_probs=50.8
Q ss_pred chHHHHHHHHHHHhhCCCceEEEEEcCCCCCchhHHH-------HhcCHHHHHH---HHHHHHHHHHcCCCcEEEeeecC
Q 037639 72 NQAIFSSFTRTVQQKNPAVKALLSIGGGNASKESFAA-------MASQAASRKS---FIDSSINLARSLNFHGLDIDWEY 141 (361)
Q Consensus 72 ~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~-------~~~~~~~r~~---f~~~l~~~l~~~~~DGidiD~e~ 141 (361)
..+.+.++.+++|++ |+|+-+....+.-....+.. -...+...+- +..++.++|.+||-|.+=+|+..
T Consensus 126 krDiv~el~~A~rk~--Glk~G~Y~S~~DW~~p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~ 203 (384)
T smart00812 126 KRDLVGELADAVRKR--GLKFGLYHSLFDWFNPLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGW 203 (384)
T ss_pred CcchHHHHHHHHHHc--CCeEEEEcCHHHhCCCccccccccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCC
Confidence 456788898899998 88888765543211111210 0011112222 26899999999999999889876
Q ss_pred CCccchhhHHHHHHHHHH
Q 037639 142 PDNAQMSDFGTLLTEWRS 159 (361)
Q Consensus 142 ~~~~~~~~~~~~l~~l~~ 159 (361)
+...+.....+|++.+|+
T Consensus 204 ~~~~~~~~~~~l~~~~~~ 221 (384)
T smart00812 204 EAPDDYWRSKEFLAWLYN 221 (384)
T ss_pred CCccchhcHHHHHHHHHH
Confidence 554333334445555544
No 115
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=45.85 E-value=2.4e+02 Score=25.74 Aligned_cols=66 Identities=9% Similarity=0.204 Sum_probs=46.3
Q ss_pred HHHHHHHHHhhCCCceEEEEEcCCC---CCchhHHH-----------------HhcCHHHHHHHHHHHHHHHHcCCCcEE
Q 037639 76 FSSFTRTVQQKNPAVKALLSIGGGN---ASKESFAA-----------------MASQAASRKSFIDSSINLARSLNFHGL 135 (361)
Q Consensus 76 ~~~~~~~lk~~~~~~kvllsigg~~---~~~~~~~~-----------------~~~~~~~r~~f~~~l~~~l~~~~~DGi 135 (361)
..++++.||++ |+|+++.+--.- ...+.+.. -..+++.++-+.+.+.+.+.+.|+||+
T Consensus 76 p~~mi~~Lh~~--G~k~v~~v~P~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~ 153 (292)
T cd06595 76 PEKLLQDLHDR--GLKVTLNLHPADGIRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQGVDFW 153 (292)
T ss_pred HHHHHHHHHHC--CCEEEEEeCCCcccCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcCCcEE
Confidence 46788889987 899998774321 11112221 134677888888999999999999999
Q ss_pred EeeecCCC
Q 037639 136 DIDWEYPD 143 (361)
Q Consensus 136 diD~e~~~ 143 (361)
=+|+..+.
T Consensus 154 W~D~~E~~ 161 (292)
T cd06595 154 WLDWQQGN 161 (292)
T ss_pred EecCCCCc
Confidence 99985443
No 116
>PRK08005 epimerase; Validated
Probab=45.56 E-value=1.1e+02 Score=26.64 Aligned_cols=68 Identities=13% Similarity=0.038 Sum_probs=43.4
Q ss_pred HHHHHHcCCCcEEEeeecCCCccchhhHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecccccccCCCChhhHhccCCeE
Q 037639 123 SINLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWT 202 (361)
Q Consensus 123 l~~~l~~~~~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v 202 (361)
.+..+.+.|.|-|-+.+|.. ....++++.+|+. | ...-+++.+..... .+..+.+.+|+|
T Consensus 73 ~i~~~~~~gad~It~H~Ea~-----~~~~~~l~~Ik~~----G-------~k~GlAlnP~Tp~~----~i~~~l~~vD~V 132 (210)
T PRK08005 73 WLPWLAAIRPGWIFIHAESV-----QNPSEILADIRAI----G-------AKAGLALNPATPLL----PYRYLALQLDAL 132 (210)
T ss_pred HHHHHHHhCCCEEEEcccCc-----cCHHHHHHHHHHc----C-------CcEEEEECCCCCHH----HHHHHHHhcCEE
Confidence 34455567899999999942 2345566666553 2 45566655433221 345567799999
Q ss_pred EeeeeccC
Q 037639 203 NVMAYDFF 210 (361)
Q Consensus 203 ~lm~yd~~ 210 (361)
.+|+-+..
T Consensus 133 lvMsV~PG 140 (210)
T PRK08005 133 MIMTSEPD 140 (210)
T ss_pred EEEEecCC
Confidence 99998665
No 117
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=45.37 E-value=71 Score=26.52 Aligned_cols=101 Identities=7% Similarity=0.037 Sum_probs=65.8
Q ss_pred HHHHHHHhhCCCceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc----------cch
Q 037639 78 SFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN----------AQM 147 (361)
Q Consensus 78 ~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~----------~~~ 147 (361)
+.++.|+ .++++|+..|....- ...+ .++...||=|.+++-+.+. ..+
T Consensus 44 ~nl~~L~--~~g~~V~~~VDat~l-~~~~-------------------~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr 101 (166)
T PF10354_consen 44 ENLEELR--ELGVTVLHGVDATKL-HKHF-------------------RLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNR 101 (166)
T ss_pred HHHHHHh--hcCCccccCCCCCcc-cccc-------------------cccCCcCCEEEEeCCCCCCCccchhHHHHHHH
Confidence 3444564 448999988877543 1111 4456679999999988872 233
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecccccccCCCChhhHhccCCeEEeeeeccC
Q 037639 148 SDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFF 210 (361)
Q Consensus 148 ~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~lm~yd~~ 210 (361)
..+..|++..+..+...| ...||+.-..+ ...+++..+++...++.+....+.
T Consensus 102 ~Ll~~Ff~Sa~~~L~~~G------~IhVTl~~~~p----y~~W~i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 102 ELLRGFFKSASQLLKPDG------EIHVTLKDGQP----YDSWNIEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred HHHHHHHHHHHHhcCCCC------EEEEEeCCCCC----CccccHHHHHHhcCCEEEEEecCC
Confidence 445566666666665543 15566654433 134688999999999999998887
No 118
>PRK03995 hypothetical protein; Provisional
Probab=44.96 E-value=85 Score=28.37 Aligned_cols=69 Identities=19% Similarity=0.316 Sum_probs=44.5
Q ss_pred CCceEEEEEcCCCCCchhHHHHhcCHH----------HHHHHH-HHHHHHHHcC--CCcEEEeeecCCCccchhhHHHHH
Q 037639 88 PAVKALLSIGGGNASKESFAAMASQAA----------SRKSFI-DSSINLARSL--NFHGLDIDWEYPDNAQMSDFGTLL 154 (361)
Q Consensus 88 ~~~kvllsigg~~~~~~~~~~~~~~~~----------~r~~f~-~~l~~~l~~~--~~DGidiD~e~~~~~~~~~~~~~l 154 (361)
...++++.|||.=+ ...|.+++.... ....+- ..+.+.+.+. ++|.+-|||......++..+..++
T Consensus 179 ~~~~~~iGiGGgHY-apr~T~~~l~~~~~~GHi~pky~l~~~~~~~i~~a~~ks~~~~~~~~id~K~~k~~~r~~i~~~l 257 (267)
T PRK03995 179 EKFKPAIGIGGGHY-APKFTKLALESEYCFGHIIPKYALDHLSEEVLIQAIEKSTPEIDRIVIDWKGVKSEDRERIIEFL 257 (267)
T ss_pred cCCCEEEEECCCCc-cHHHHHHHhhCCeeEEeEccccchhcCCHHHHHHHHHhccCCCCEEEEecCCCCHHHHHHHHHHH
Confidence 47889999999755 555655544220 000011 1244455553 689999999888778888888888
Q ss_pred HHH
Q 037639 155 TEW 157 (361)
Q Consensus 155 ~~l 157 (361)
+++
T Consensus 258 e~~ 260 (267)
T PRK03995 258 EEL 260 (267)
T ss_pred HHC
Confidence 765
No 119
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=43.85 E-value=66 Score=29.97 Aligned_cols=43 Identities=14% Similarity=0.232 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCCcEEEeeecCCCc------------cchhhHHHHHHHHHHHHH
Q 037639 120 IDSSINLARSLNFHGLDIDWEYPDN------------AQMSDFGTLLTEWRSAVA 162 (361)
Q Consensus 120 ~~~l~~~l~~~~~DGidiD~e~~~~------------~~~~~~~~~l~~l~~~l~ 162 (361)
....+..+.+.|+|+|||+.-=|.. .+.+.+.+++++++++.+
T Consensus 81 l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~ 135 (323)
T COG0042 81 LAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVG 135 (323)
T ss_pred HHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhC
Confidence 3456778888999999999976653 577888899999888875
No 120
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=42.95 E-value=1.2e+02 Score=26.71 Aligned_cols=88 Identities=8% Similarity=-0.007 Sum_probs=51.6
Q ss_pred CceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc------------cchhhHHHHHHH
Q 037639 89 AVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN------------AQMSDFGTLLTE 156 (361)
Q Consensus 89 ~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~------------~~~~~~~~~l~~ 156 (361)
+.+++++|++.+ .+.+. .++..+.+ ++|+|||+.--|.. .+.+.+.++++.
T Consensus 67 ~~~vivnv~~~~--~ee~~--------------~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~a 129 (231)
T TIGR00736 67 RALVSVNVRFVD--LEEAY--------------DVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTK 129 (231)
T ss_pred cCCEEEEEecCC--HHHHH--------------HHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHH
Confidence 568999999864 23332 23344444 69999999987763 467777777777
Q ss_pred HHHHHHHHHHhcCCCceEEEEEeeccccc-ccCCCChhhHhccCCeEEe
Q 037639 157 WRSAVAAEARSSGKPALLLTAAVSYSANY-FGAINPTSAISNSLDWTNV 204 (361)
Q Consensus 157 l~~~l~~~~~~~~~~~~~ls~a~~~~~~~-~~~~~~~~~l~~~vD~v~l 204 (361)
+++. + ..+++-+.+.... .....-.......+|.+.|
T Consensus 130 v~~~----~-------~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~V 167 (231)
T TIGR00736 130 MKEL----N-------KPIFVKIRGNCIPLDELIDALNLVDDGFDGIHV 167 (231)
T ss_pred HHcC----C-------CcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEE
Confidence 7721 1 4566665543211 0001111123456899987
No 121
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=42.87 E-value=1.4e+02 Score=26.21 Aligned_cols=69 Identities=7% Similarity=0.038 Sum_probs=43.1
Q ss_pred HHHHHcCCCcEEEeeecCCCccchhhHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecccccccCCCChhhHhccCCeEE
Q 037639 124 INLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTN 203 (361)
Q Consensus 124 ~~~l~~~~~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~ 203 (361)
+..+.+.|.|-|-|..|.. ....++++.+|+. | . +....+++.+..... .+..+.+.+|+|.
T Consensus 84 i~~~~~aGad~It~H~Ea~-----~~~~~~l~~Ik~~----g----~-~~kaGlalnP~Tp~~----~i~~~l~~vD~VL 145 (228)
T PRK08091 84 AKACVAAGADIVTLQVEQT-----HDLALTIEWLAKQ----K----T-TVLIGLCLCPETPIS----LLEPYLDQIDLIQ 145 (228)
T ss_pred HHHHHHhCCCEEEEcccCc-----ccHHHHHHHHHHC----C----C-CceEEEEECCCCCHH----HHHHHHhhcCEEE
Confidence 4455667999999999942 2345566555543 2 0 015555555433221 3566778999999
Q ss_pred eeeeccC
Q 037639 204 VMAYDFF 210 (361)
Q Consensus 204 lm~yd~~ 210 (361)
+||-+..
T Consensus 146 iMtV~PG 152 (228)
T PRK08091 146 ILTLDPR 152 (228)
T ss_pred EEEECCC
Confidence 9998765
No 122
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=42.81 E-value=1.8e+02 Score=25.56 Aligned_cols=118 Identities=9% Similarity=0.089 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhh-----CCCceEEEEEcCCCCCchhHHHHhc-CHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc-cc
Q 037639 74 AIFSSFTRTVQQK-----NPAVKALLSIGGGNASKESFAAMAS-QAASRKSFIDSSINLARSLNFHGLDIDWEYPDN-AQ 146 (361)
Q Consensus 74 ~~~~~~~~~lk~~-----~~~~kvllsigg~~~~~~~~~~~~~-~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~-~~ 146 (361)
..+.+++++++.+ .++-+..+=|.=. .....+.. +.+....++..+.+....+ .|-+|.|.. .+
T Consensus 47 e~L~eYv~Wl~~Ri~~lg~~~Y~P~lHiDVY----GtiG~~f~~d~~~~adYl~~l~~aA~P~-----~L~iEgP~d~g~ 117 (248)
T PF07476_consen 47 EKLLEYVKWLKDRIRELGDEDYRPVLHIDVY----GTIGLAFDNDPDRMADYLAELEEAAAPF-----KLRIEGPMDAGS 117 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSSTT---EEEEE-T----THHHHHTTT-HHHHHHHHHHHHHHHTTS------EEEE-SB--SS
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCccEEEEcc----chHHHHhCCCHHHHHHHHHHHHHhcCCC-----eeeeeCCcCCCC
Confidence 4455666655554 2344444433322 11233333 5566667777777776665 466888876 78
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecccccccCCCChhhH--hccCCeEEeeeeccC
Q 037639 147 MSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAI--SNSLDWTNVMAYDFF 210 (361)
Q Consensus 147 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l--~~~vD~v~lm~yd~~ 210 (361)
++.-.+.+++||+.|++.|.. ..|.+.=.|..-. |+... .+.+|+|.|.|=|+.
T Consensus 118 r~~QI~~l~~Lr~~L~~~g~~-----v~iVADEWCNT~e-----DI~~F~da~A~dmVQIKtPDLG 173 (248)
T PF07476_consen 118 REAQIEALAELREELDRRGIN-----VEIVADEWCNTLE-----DIREFADAKAADMVQIKTPDLG 173 (248)
T ss_dssp HHHHHHHHHHHHHHHHHCT-------EEEEE-TT--SHH-----HHHHHHHTT-SSEEEE-GGGGS
T ss_pred hHHHHHHHHHHHHHHHhcCCC-----CeEEeehhcCCHH-----HHHHHHhcCCcCEEEecCCCcc
Confidence 899999999999999987521 3343322222110 23332 567999999999987
No 123
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=42.73 E-value=2e+02 Score=26.95 Aligned_cols=79 Identities=10% Similarity=0.115 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhCCCceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc------cchh
Q 037639 75 IFSSFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN------AQMS 148 (361)
Q Consensus 75 ~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~------~~~~ 148 (361)
....+++.+++...++.+.+|||+.... ..+..-+.|++.+-.. .. ..|.++|+.--|.. ++.+
T Consensus 120 G~~~~l~~i~~~~~~~~i~vsi~~~~~~--------~~~~~~~dy~~~~~~~-~~-~ad~iElNlScPn~~~~~~~~~~~ 189 (335)
T TIGR01036 120 GADVLVERLKRARYKGPIGINIGKNKDT--------PSEDAKEDYAACLRKL-GP-LADYLVVNVSSPNTPGLRDLQYKA 189 (335)
T ss_pred hHHHHHHHHhhccCCCcEEEEEeCCCCC--------CcccCHHHHHHHHHHH-hh-hCCEEEEEccCCCCCCcccccCHH
Confidence 3445555566555578899999875210 0111223333333332 33 28999999876642 5667
Q ss_pred hHHHHHHHHHHHHHH
Q 037639 149 DFGTLLTEWRSAVAA 163 (361)
Q Consensus 149 ~~~~~l~~l~~~l~~ 163 (361)
.+.++++.+++....
T Consensus 190 ~~~~i~~~V~~~~~~ 204 (335)
T TIGR01036 190 ELRDLLTAVKQEQDG 204 (335)
T ss_pred HHHHHHHHHHHHHHh
Confidence 788888888877663
No 124
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=42.72 E-value=1.1e+02 Score=32.27 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEeeec
Q 037639 115 SRKSFIDSSINLARSLNFHGLDIDWE 140 (361)
Q Consensus 115 ~r~~f~~~l~~~l~~~~~DGidiD~e 140 (361)
..+.|++... .+++-|||||+|..-
T Consensus 549 ~i~~f~~aA~-~a~~aGfDgveih~a 573 (765)
T PRK08255 549 VRDDFVAAAR-RAAEAGFDWLELHCA 573 (765)
T ss_pred HHHHHHHHHH-HHHHcCCCEEEEecc
Confidence 3455665444 445679999999865
No 125
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=42.54 E-value=34 Score=30.27 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=26.1
Q ss_pred HHHHHHHHHcCCCcEEEeeecCCCccchhhHHHHHHHHHHHHHHHH
Q 037639 120 IDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAEA 165 (361)
Q Consensus 120 ~~~l~~~l~~~~~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~~~ 165 (361)
....++.+++.|||||+|.+.+ ..-++++++.+...|
T Consensus 16 l~e~~~~~~e~G~~~vEl~~~~---------~~~~~~l~~~l~~~g 52 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLFPY---------DWDAEALKARLAAAG 52 (254)
T ss_pred HHHHHHHHHHcCCCEEEecCCc---------cCCHHHHHHHHHHcC
Confidence 4567888899999999997632 112566777777654
No 126
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=42.25 E-value=1.5e+02 Score=27.47 Aligned_cols=64 Identities=11% Similarity=0.099 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhCCCceEEEEEcCCCC-Cchh------------------------------HHHHhcCHHHHHHHHHHHH
Q 037639 76 FSSFTRTVQQKNPAVKALLSIGGGNA-SKES------------------------------FAAMASQAASRKSFIDSSI 124 (361)
Q Consensus 76 ~~~~~~~lk~~~~~~kvllsigg~~~-~~~~------------------------------~~~~~~~~~~r~~f~~~l~ 124 (361)
..++++.||++ ++|+++.|--.-. ++.. +-. +.+++.|+=+.+.+.
T Consensus 75 p~~mi~~L~~~--g~k~~~~i~P~i~~~~~~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~D-ftnp~a~~ww~~~~~ 151 (317)
T cd06599 75 PAAFVAKFHER--GIRLAPNIKPGLLQDHPRYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVD-FTNPEGREWWKEGVK 151 (317)
T ss_pred HHHHHHHHHHC--CCEEEEEeCCcccCCCHHHHHHHHCCcEEEcCCCCCcceecccCCCeEeec-CCChHHHHHHHHHHH
Confidence 45788889998 8999986632110 0000 111 247888888888888
Q ss_pred HHHHcCCCcEEEeeecCC
Q 037639 125 NLARSLNFHGLDIDWEYP 142 (361)
Q Consensus 125 ~~l~~~~~DGidiD~e~~ 142 (361)
+.+.+.|+||+=+|...+
T Consensus 152 ~~~~~~Gvdg~w~D~~E~ 169 (317)
T cd06599 152 EALLDLGIDSTWNDNNEY 169 (317)
T ss_pred HHHhcCCCcEEEecCCCC
Confidence 889999999999998544
No 127
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=40.70 E-value=1e+02 Score=22.56 Aligned_cols=60 Identities=15% Similarity=0.198 Sum_probs=43.1
Q ss_pred hhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc----------cchhhHHHHHHHHHHHHHH
Q 037639 104 ESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN----------AQMSDFGTLLTEWRSAVAA 163 (361)
Q Consensus 104 ~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~----------~~~~~~~~~l~~l~~~l~~ 163 (361)
+.............+....+...+++++++=--+|.|+.-. +++-+|..|+++|...|+.
T Consensus 12 eD~~~~~~~~~~e~~al~~c~~~~~~~~L~m~lvd~e~~~D~~k~~fyy~a~~rvDFR~Lvr~L~~~f~~ 81 (88)
T PF04468_consen 12 EDIERLERLREREEEALKFCRELVKELGLPMKLVDVEYQFDGSKLTFYYTAESRVDFRELVRDLAREFKT 81 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEcCCCEEEEEEEeCCcCcHHHHHHHHHHHhCc
Confidence 34444444445556667777788888888766677776532 7889999999999988864
No 128
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=40.44 E-value=1.4e+02 Score=25.58 Aligned_cols=67 Identities=10% Similarity=0.081 Sum_probs=43.0
Q ss_pred HHHHHcCCCcEEEeeecCCCccchhhHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecccccccCCCChhhHhccCCeEE
Q 037639 124 INLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTN 203 (361)
Q Consensus 124 ~~~l~~~~~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~ 203 (361)
+.-+.+-|.+.+.|.+|.. +....+++.+|+ .| ...-+++-+..... ++..+.+.+|++.
T Consensus 80 V~~~a~agas~~tfH~E~~-----q~~~~lv~~ir~----~G-------mk~G~alkPgT~Ve----~~~~~~~~~D~vL 139 (224)
T KOG3111|consen 80 VDQMAKAGASLFTFHYEAT-----QKPAELVEKIRE----KG-------MKVGLALKPGTPVE----DLEPLAEHVDMVL 139 (224)
T ss_pred HHHHHhcCcceEEEEEeec-----cCHHHHHHHHHH----cC-------CeeeEEeCCCCcHH----HHHHhhccccEEE
Confidence 4455667899999999843 224445554443 33 56777766543321 4556677999999
Q ss_pred eeeeccC
Q 037639 204 VMAYDFF 210 (361)
Q Consensus 204 lm~yd~~ 210 (361)
+||-...
T Consensus 140 vMtVePG 146 (224)
T KOG3111|consen 140 VMTVEPG 146 (224)
T ss_pred EEEecCC
Confidence 9998655
No 129
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=40.37 E-value=1.3e+02 Score=26.42 Aligned_cols=68 Identities=16% Similarity=0.003 Sum_probs=41.7
Q ss_pred HHHHHcCCCcEEEeeecCCCccchhhHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecccccccCCCChhhHhccCCeEE
Q 037639 124 INLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTN 203 (361)
Q Consensus 124 ~~~l~~~~~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~ 203 (361)
+..+.+.|.|=|-|..|.. .....++++.+|+. | ....+++.+..... .+..+.+.+|+|.
T Consensus 75 i~~~~~aGad~it~H~Ea~----~~~~~~~i~~Ik~~----G-------~kaGlalnP~T~~~----~l~~~l~~vD~VL 135 (229)
T PRK09722 75 IDQLADAGADFITLHPETI----NGQAFRLIDEIRRA----G-------MKVGLVLNPETPVE----SIKYYIHLLDKIT 135 (229)
T ss_pred HHHHHHcCCCEEEECccCC----cchHHHHHHHHHHc----C-------CCEEEEeCCCCCHH----HHHHHHHhcCEEE
Confidence 3444555899999999832 12344555555543 2 44555555433221 3566778999999
Q ss_pred eeeeccC
Q 037639 204 VMAYDFF 210 (361)
Q Consensus 204 lm~yd~~ 210 (361)
+|+-+..
T Consensus 136 vMsV~PG 142 (229)
T PRK09722 136 VMTVDPG 142 (229)
T ss_pred EEEEcCC
Confidence 9998654
No 130
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=40.00 E-value=2e+02 Score=25.25 Aligned_cols=54 Identities=9% Similarity=0.086 Sum_probs=35.3
Q ss_pred CceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc------------cchhhHHHHHHH
Q 037639 89 AVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN------------AQMSDFGTLLTE 156 (361)
Q Consensus 89 ~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~------------~~~~~~~~~l~~ 156 (361)
+..+.++|.|.+. +.+ ..++..+.++ .|+|||+..-|.. .+.+...+++++
T Consensus 72 ~~p~~vqi~g~~~--~~~--------------~~aa~~~~~~-~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~a 134 (233)
T cd02911 72 NVLVGVNVRSSSL--EPL--------------LNAAALVAKN-AAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKA 134 (233)
T ss_pred CCeEEEEecCCCH--HHH--------------HHHHHHHhhc-CCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHH
Confidence 6788899988532 222 2344555565 5999999986653 345666777777
Q ss_pred HHH
Q 037639 157 WRS 159 (361)
Q Consensus 157 l~~ 159 (361)
+|+
T Consensus 135 vr~ 137 (233)
T cd02911 135 LKE 137 (233)
T ss_pred HHh
Confidence 765
No 131
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=39.99 E-value=65 Score=28.96 Aligned_cols=44 Identities=7% Similarity=0.142 Sum_probs=27.9
Q ss_pred HHHHHHHHcCCCcEEEeeecCCCc-cchhhHHHHHHHHHHHHHHH
Q 037639 121 DSSINLARSLNFHGLDIDWEYPDN-AQMSDFGTLLTEWRSAVAAE 164 (361)
Q Consensus 121 ~~l~~~l~~~~~DGidiD~e~~~~-~~~~~~~~~l~~l~~~l~~~ 164 (361)
...++.+++.|||||+|....+.. .....-..-++++++.+.+.
T Consensus 13 ~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 57 (279)
T cd00019 13 ENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEG 57 (279)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHc
Confidence 456888999999999997654432 11111124566777776654
No 132
>COG3410 Uncharacterized conserved protein [Function unknown]
Probab=39.71 E-value=62 Score=26.75 Aligned_cols=33 Identities=27% Similarity=0.337 Sum_probs=29.3
Q ss_pred hcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCC
Q 037639 110 ASQAASRKSFIDSSINLARSLNFHGLDIDWEYP 142 (361)
Q Consensus 110 ~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~ 142 (361)
-.+++..++.+.|-+..|-+.|..|+.|.+|-|
T Consensus 144 ~k~~eik~kiIkNsinvlmtRGIrGlyiyaeDp 176 (191)
T COG3410 144 EKNQEIKEKIIKNSINVLMTRGIRGLYIYAEDP 176 (191)
T ss_pred hhCHHHHHHHHHHHHHHHHhcccceEEEEEeCH
Confidence 346788899999999999999999999999865
No 133
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=39.68 E-value=3.1e+02 Score=25.31 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=29.2
Q ss_pred hhCCCceEEEEEcCCCCC--------chhHHHHhcCH--HHHHHHHHHHHHHHHcCCCcEEEeeecCCCc
Q 037639 85 QKNPAVKALLSIGGGNAS--------KESFAAMASQA--ASRKSFIDSSINLARSLNFHGLDIDWEYPDN 144 (361)
Q Consensus 85 ~~~~~~kvllsigg~~~~--------~~~~~~~~~~~--~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~ 144 (361)
.++.++|||+-+-=..++ +..|..+--+. ...-.+.+.++..|++ .||++||-+.+.
T Consensus 113 Ak~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~---eGi~pdmVQVGN 179 (403)
T COG3867 113 AKNLGMKVLLDFHYSDFWADPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKK---EGILPDMVQVGN 179 (403)
T ss_pred HHhcCcEEEeeccchhhccChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHH---cCCCccceEecc
Confidence 345599999887543221 11222211111 1122355666666666 467888865543
No 134
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=38.98 E-value=54 Score=25.58 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCCcEEEeeecCCCccchhhHHHHHHHHHHHHHHHH
Q 037639 120 IDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAEA 165 (361)
Q Consensus 120 ~~~l~~~l~~~~~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~~~ 165 (361)
.+.+.+.|++.|++.--+++++....+.+.|+..++++-+.+.+-|
T Consensus 80 ~~~lke~l~elgie~eRv~~~wiSa~E~ekf~e~~~efv~~i~~lG 125 (132)
T COG1908 80 MELLKELLKELGIEPERVRVLWISAAEGEKFAETINEFVERIKELG 125 (132)
T ss_pred HHHHHHHHHHhCCCcceEEEEEEehhhHHHHHHHHHHHHHHHHHhC
Confidence 4556777888899888888888888999999999999988887654
No 135
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=38.95 E-value=52 Score=29.64 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=29.4
Q ss_pred HHHHHHHHcCCCcEEEeeecCCCc-cc-hhhHHHHHHHHHHHHHHHH
Q 037639 121 DSSINLARSLNFHGLDIDWEYPDN-AQ-MSDFGTLLTEWRSAVAAEA 165 (361)
Q Consensus 121 ~~l~~~l~~~~~DGidiD~e~~~~-~~-~~~~~~~l~~l~~~l~~~~ 165 (361)
...++.+++.|||||+|....+.. .+ ......-++++++.+.+.|
T Consensus 19 ~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 65 (279)
T TIGR00542 19 LERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETG 65 (279)
T ss_pred HHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcC
Confidence 345688899999999996543211 01 1112556778888888775
No 136
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=37.52 E-value=96 Score=27.76 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhhCCCceEEEEEcCC
Q 037639 74 AIFSSFTRTVQQKNPAVKALLSIGGG 99 (361)
Q Consensus 74 ~~~~~~~~~lk~~~~~~kvllsigg~ 99 (361)
..+..+++.|++.||.+||+++|.--
T Consensus 152 ~~l~~~~~~l~~~nP~~kiilTVSPV 177 (251)
T PF08885_consen 152 EDLEAIIDLLRSINPDIKIILTVSPV 177 (251)
T ss_pred HHHHHHHHHHHhhCCCceEEEEeccc
Confidence 44677788899999999999999753
No 137
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=37.49 E-value=1.2e+02 Score=28.28 Aligned_cols=38 Identities=21% Similarity=0.178 Sum_probs=26.0
Q ss_pred HHHHHcCCCcEEEeeecCCCc------------cchhhHHHHHHHHHHHH
Q 037639 124 INLARSLNFHGLDIDWEYPDN------------AQMSDFGTLLTEWRSAV 161 (361)
Q Consensus 124 ~~~l~~~~~DGidiD~e~~~~------------~~~~~~~~~l~~l~~~l 161 (361)
+..+.+.|+|+|||+.-=|.. .+.+...++++++++.+
T Consensus 83 a~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~ 132 (321)
T PRK10415 83 ARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV 132 (321)
T ss_pred HHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc
Confidence 445567899999999987642 34555666666666554
No 138
>PRK09505 malS alpha-amylase; Reviewed
Probab=37.28 E-value=78 Score=32.84 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHHHHcCCCcEEEeeec
Q 037639 112 QAASRKSFIDSSINLARSLNFHGLDIDWE 140 (361)
Q Consensus 112 ~~~~r~~f~~~l~~~l~~~~~DGidiD~e 140 (361)
+++.|+.+++.+..|++++|+||+-||--
T Consensus 435 n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaa 463 (683)
T PRK09505 435 GYTPRDYLTHWLSQWVRDYGIDGFRVDTA 463 (683)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEech
Confidence 45788888988889999999999999963
No 139
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=36.95 E-value=62 Score=29.10 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=29.0
Q ss_pred HHHHHHHHcCCCcEEEeeecCCCc--cchhhHHHHHHHHHHHHHHHH
Q 037639 121 DSSINLARSLNFHGLDIDWEYPDN--AQMSDFGTLLTEWRSAVAAEA 165 (361)
Q Consensus 121 ~~l~~~l~~~~~DGidiD~e~~~~--~~~~~~~~~l~~l~~~l~~~~ 165 (361)
...++.+++.|||||+|....+.. .....-...++++++.+++.|
T Consensus 24 ~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 70 (283)
T PRK13209 24 LEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETG 70 (283)
T ss_pred HHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcC
Confidence 356788899999999997643211 001112346778888887765
No 140
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=36.04 E-value=81 Score=28.34 Aligned_cols=103 Identities=25% Similarity=0.342 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHh-hCC--CceEEEEEcCCCCCchhHHHHhc--CHHHHHHHHHHHHHHHHcCCCcEEEee-ecCCCc--
Q 037639 73 QAIFSSFTRTVQQ-KNP--AVKALLSIGGGNASKESFAAMAS--QAASRKSFIDSSINLARSLNFHGLDID-WEYPDN-- 144 (361)
Q Consensus 73 ~~~~~~~~~~lk~-~~~--~~kvllsigg~~~~~~~~~~~~~--~~~~r~~f~~~l~~~l~~~~~DGidiD-~e~~~~-- 144 (361)
..++.+++..-+. .++ +.+-+|-||-..+ +.-..+.. ..-........+..-|++.||+=++.| |+....
T Consensus 75 ~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG--~VT~~l~~~f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~~~~f 152 (265)
T PF05219_consen 75 EEQFRKLLRISGFSWNPDWKDKSLLDLGAGDG--EVTERLAPLFKEVYATEASPPMRWRLSKKGFTVLDIDDWQQTDFKF 152 (265)
T ss_pred HHHHHHHhhhhccCCCCcccCCceEEecCCCc--HHHHHHHhhcceEEeecCCHHHHHHHHhCCCeEEehhhhhccCCce
Confidence 3455666542221 123 3456788886543 21111110 001112233455677889999988864 764321
Q ss_pred ---------cchhhHHHHHHHHHHHHHHHHHhcCCCceEEEEEeeccc
Q 037639 145 ---------AQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSA 183 (361)
Q Consensus 145 ---------~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a~~~~~ 183 (361)
+-...=..+|+++|.+++..|+ ++|++.+|..+
T Consensus 153 DvIscLNvLDRc~~P~~LL~~i~~~l~p~G~------lilAvVlP~~p 194 (265)
T PF05219_consen 153 DVISCLNVLDRCDRPLTLLRDIRRALKPNGR------LILAVVLPFRP 194 (265)
T ss_pred EEEeehhhhhccCCHHHHHHHHHHHhCCCCE------EEEEEEecccc
Confidence 3445667899999999887552 78888888644
No 141
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=35.68 E-value=2.4e+02 Score=24.62 Aligned_cols=68 Identities=6% Similarity=-0.035 Sum_probs=43.0
Q ss_pred HHHHHHcCCCcEEEeeecCCCccchhhHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecccccccCCCChhhHhccCCeE
Q 037639 123 SINLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWT 202 (361)
Q Consensus 123 l~~~l~~~~~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v 202 (361)
.+..+.+.|.|-|.+..| ......+.++.+|+. | ....+++.+..... .+..+.+.+|+|
T Consensus 76 ~i~~fa~agad~It~H~E-----~~~~~~r~i~~Ik~~----G-------~kaGv~lnP~Tp~~----~i~~~l~~vD~V 135 (220)
T COG0036 76 YIEAFAKAGADIITFHAE-----ATEHIHRTIQLIKEL----G-------VKAGLVLNPATPLE----ALEPVLDDVDLV 135 (220)
T ss_pred HHHHHHHhCCCEEEEEec-----cCcCHHHHHHHHHHc----C-------CeEEEEECCCCCHH----HHHHHHhhCCEE
Confidence 344455668999999998 223455566666553 2 44555554432221 356668899999
Q ss_pred EeeeeccC
Q 037639 203 NVMAYDFF 210 (361)
Q Consensus 203 ~lm~yd~~ 210 (361)
.+||-+..
T Consensus 136 llMsVnPG 143 (220)
T COG0036 136 LLMSVNPG 143 (220)
T ss_pred EEEeECCC
Confidence 99998655
No 142
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=35.21 E-value=2.6e+02 Score=23.15 Aligned_cols=109 Identities=9% Similarity=0.046 Sum_probs=57.5
Q ss_pred CCCcEEEEEEEEeeCCCc-EEEeC-----CcchHHHHHHHHHHHhhCCCceEEEEEcCCCCCchhHHHHhcCHHHHHHHH
Q 037639 47 ILFTHLFCAFADLDSQNF-QVTVS-----SENQAIFSSFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFI 120 (361)
Q Consensus 47 ~~~thii~~~~~v~~~~~-~~~~~-----~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~ 120 (361)
-.|++||+.+.......+ -.... ....+.+..+++.+.+. |+||++.++-. ..-|.. .+.+....+.
T Consensus 32 ~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~--Gmkv~~Gl~~~---~~~w~~--~~~~~~~~~~ 104 (166)
T PF14488_consen 32 IGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKY--GMKVFVGLYFD---PDYWDQ--GDLDWEAERN 104 (166)
T ss_pred cCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHc--CCEEEEeCCCC---chhhhc--cCHHHHHHHH
Confidence 358889888765442110 01110 11234566666666666 99999999864 233442 4444443333
Q ss_pred HHHHHHHH----cC-CCcEEEeeecCCCccchhhHHHHHHHHHHHHHHH
Q 037639 121 DSSINLAR----SL-NFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAE 164 (361)
Q Consensus 121 ~~l~~~l~----~~-~~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~~ 164 (361)
+.+++.+. .| .|.|-=|-.|-.... ..-..+++.|...++..
T Consensus 105 ~~v~~el~~~yg~h~sf~GWYip~E~~~~~--~~~~~~~~~l~~~lk~~ 151 (166)
T PF14488_consen 105 KQVADELWQRYGHHPSFYGWYIPYEIDDYN--WNAPERFALLGKYLKQI 151 (166)
T ss_pred HHHHHHHHHHHcCCCCCceEEEecccCCcc--cchHHHHHHHHHHHHHh
Confidence 44444442 23 389999988854431 11244455555555443
No 143
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=35.18 E-value=2e+02 Score=25.23 Aligned_cols=67 Identities=9% Similarity=-0.094 Sum_probs=42.9
Q ss_pred HHHHHcCCCcEEEeeecCCCccchhhHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecccccccCCCChhhHhccCCeEE
Q 037639 124 INLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTN 203 (361)
Q Consensus 124 ~~~l~~~~~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~ 203 (361)
+..+.+.|.|=|-+..|.. ....++++.+|+. | ....+++.+..... .+..+.+.+|+|.
T Consensus 78 i~~~~~~gad~I~~H~Ea~-----~~~~~~l~~Ir~~----g-------~k~GlalnP~T~~~----~i~~~l~~vD~Vl 137 (223)
T PRK08745 78 VPDFADAGATTISFHPEAS-----RHVHRTIQLIKSH----G-------CQAGLVLNPATPVD----ILDWVLPELDLVL 137 (223)
T ss_pred HHHHHHhCCCEEEEcccCc-----ccHHHHHHHHHHC----C-------CceeEEeCCCCCHH----HHHHHHhhcCEEE
Confidence 3444556899999999842 2355666666553 2 44555555432221 3466788999999
Q ss_pred eeeeccC
Q 037639 204 VMAYDFF 210 (361)
Q Consensus 204 lm~yd~~ 210 (361)
+||-+..
T Consensus 138 vMtV~PG 144 (223)
T PRK08745 138 VMSVNPG 144 (223)
T ss_pred EEEECCC
Confidence 9998765
No 144
>PRK15396 murein lipoprotein; Provisional
Probab=34.94 E-value=35 Score=24.47 Aligned_cols=24 Identities=17% Similarity=-0.081 Sum_probs=13.6
Q ss_pred CCCcchhHHHHHHHHHhhhhcccC
Q 037639 1 MAPKILPVLLSFTLLLLQLHSSAG 24 (361)
Q Consensus 1 M~~~~~~~~l~~~~l~~~~~~~~~ 24 (361)
|.++.+++..+++.+++..+|++.
T Consensus 1 m~~~kl~l~av~ls~~LLaGCAs~ 24 (78)
T PRK15396 1 MNRTKLVLGAVILGSTLLAGCSSN 24 (78)
T ss_pred CchhHHHHHHHHHHHHHHHHcCCc
Confidence 766555555555544445577654
No 145
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=34.68 E-value=1.2e+02 Score=31.42 Aligned_cols=65 Identities=17% Similarity=0.323 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhhCCCceEEEEE-------c---CCCCC-----c--------h-h--------HHHHhcCHHHHHHHHH
Q 037639 74 AIFSSFTRTVQQKNPAVKALLSI-------G---GGNAS-----K--------E-S--------FAAMASQAASRKSFID 121 (361)
Q Consensus 74 ~~~~~~~~~lk~~~~~~kvllsi-------g---g~~~~-----~--------~-~--------~~~~~~~~~~r~~f~~ 121 (361)
..+++++++|++. |+.|+|=| | |.+.. . + . ..-..+.+-.|+-.++
T Consensus 265 ~EfK~mV~~lHka--GI~VILDVVfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TGcGNtln~~hpmvrk~ivD 342 (697)
T COG1523 265 KEFKDMVKALHKA--GIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTGCGNTLNTEHPMVRKLIVD 342 (697)
T ss_pred HHHHHHHHHHHHc--CCEEEEEEeccCcccccCcCcccccccCCcCceEEECCCCCeecCCccCcccccCChHHHHHHHH
Confidence 4678888888888 99999866 1 11000 0 0 0 1222334677888999
Q ss_pred HHHHHHHcCCCcEEEeeec
Q 037639 122 SSINLARSLNFHGLDIDWE 140 (361)
Q Consensus 122 ~l~~~l~~~~~DGidiD~e 140 (361)
+|.=|+++++.||.-||.-
T Consensus 343 sLrYWv~e~hVDGFRFDLa 361 (697)
T COG1523 343 SLRYWVEEYHVDGFRFDLA 361 (697)
T ss_pred HHHHHHHHhCCCceeecch
Confidence 9999999999999999985
No 146
>PRK12677 xylose isomerase; Provisional
Probab=33.32 E-value=1.2e+02 Score=29.06 Aligned_cols=46 Identities=9% Similarity=0.085 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCCCcEEEeeecCCCc--cchhhHHHHHHHHHHHHHHHH
Q 037639 120 IDSSINLARSLNFHGLDIDWEYPDN--AQMSDFGTLLTEWRSAVAAEA 165 (361)
Q Consensus 120 ~~~l~~~l~~~~~DGidiD~e~~~~--~~~~~~~~~l~~l~~~l~~~~ 165 (361)
....+..+.+.||+||+|..+.+.. .....-...++++++.+.+.|
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~G 80 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETG 80 (384)
T ss_pred HHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcC
Confidence 4567888999999999997553322 111122246788888888765
No 147
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=33.08 E-value=2.1e+02 Score=25.90 Aligned_cols=73 Identities=14% Similarity=0.156 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHhhCCCceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCccchhhHHH
Q 037639 73 QAIFSSFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSDFGT 152 (361)
Q Consensus 73 ~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~~~~~~~~~ 152 (361)
...+.++++..|++ +|+|+|-.--.+. ..... ..++ .+.+.+.+++.|..||-+||-.. +.+...+
T Consensus 72 ~~dl~elv~Ya~~K--gVgi~lw~~~~~~--~~~~~------~~~~-~~~~f~~~~~~Gv~GvKidF~~~---d~Q~~v~ 137 (273)
T PF10566_consen 72 DFDLPELVDYAKEK--GVGIWLWYHSETG--GNVAN------LEKQ-LDEAFKLYAKWGVKGVKIDFMDR---DDQEMVN 137 (273)
T ss_dssp T--HHHHHHHHHHT--T-EEEEEEECCHT--TBHHH------HHCC-HHHHHHHHHHCTEEEEEEE--SS---TSHHHHH
T ss_pred ccCHHHHHHHHHHc--CCCEEEEEeCCcc--hhhHh------HHHH-HHHHHHHHHHcCCCEEeeCcCCC---CCHHHHH
Confidence 35678899899999 7888776543221 11111 2223 37889999999999999999643 4444444
Q ss_pred HHHHHHH
Q 037639 153 LLTEWRS 159 (361)
Q Consensus 153 ~l~~l~~ 159 (361)
+..++-+
T Consensus 138 ~y~~i~~ 144 (273)
T PF10566_consen 138 WYEDILE 144 (273)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544433
No 148
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=32.98 E-value=1.3e+02 Score=27.31 Aligned_cols=46 Identities=13% Similarity=0.094 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCCcEEEeeecCCC-----------ccchhhHHHHHHHHHHHHHHH
Q 037639 119 FIDSSINLARSLNFHGLDIDWEYPD-----------NAQMSDFGTLLTEWRSAVAAE 164 (361)
Q Consensus 119 f~~~l~~~l~~~~~DGidiD~e~~~-----------~~~~~~~~~~l~~l~~~l~~~ 164 (361)
.+.+-.+-|.+.|||||-||+--+- .........|+.++++..++.
T Consensus 127 ii~~~l~rL~d~GfdGvyLD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~ 183 (300)
T COG2342 127 IIRSYLDRLIDQGFDGVYLDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAA 183 (300)
T ss_pred HHHHHHHHHHHccCceEEEeeechHHHHHHhcccccccHHHHHHHHHHHHHHHHHhc
Confidence 4445666778889999999974322 144566778888888887765
No 149
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=32.26 E-value=58 Score=25.70 Aligned_cols=55 Identities=18% Similarity=0.201 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCCCCCceEEeccccccc-ccccCCCCCCCCCCCccCCCCcccchHHHHHHhhc
Q 037639 237 GDSGIRAWIQSGLSPKKIVLGFPFFGHS-LQLANANNHGFWAPTSGVVNGGTMSYKEIRQFIMS 299 (361)
Q Consensus 237 ~~~~~~~~~~~g~~~~KivlGlp~yG~~-~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~ 299 (361)
+..+.+++.+.++|-+.|.+|-|+=|.. +...+ ....+..-..++|.||+++++.
T Consensus 66 ~~~t~~wL~k~~ipYd~l~~~kp~~~~~~~~~dD--------~~ir~~~~~~~~~~~~~~~~~~ 121 (126)
T TIGR01689 66 LPIIILWLNQHNVPYDEIYVGKPWCGHDGFYVDD--------RAIRPSEFSSLTYDEINTLTKI 121 (126)
T ss_pred HHHHHHHHHHcCCCCceEEeCCCcCCCCCceecc--------hhhCHHHHHhcCHHHHHHHHhh
Confidence 3455566667899999999999986632 32222 1111212235899999998864
No 150
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=32.08 E-value=2.9e+02 Score=25.56 Aligned_cols=31 Identities=19% Similarity=0.074 Sum_probs=23.0
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCcEEEeeecCC
Q 037639 111 SQAASRKSFIDSSINLARSLNFHGLDIDWEYP 142 (361)
Q Consensus 111 ~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~ 142 (361)
.+++.|+=|.+.+.. +.+.|+||+=+|+..|
T Consensus 135 tnp~a~~w~~~~~~~-~~~~Gvdg~w~D~~Ep 165 (317)
T cd06598 135 FDPAAQAWFHDNYKK-LIDQGVTGWWGDLGEP 165 (317)
T ss_pred CCHHHHHHHHHHHHH-hhhCCccEEEecCCCc
Confidence 377877777665554 5888999999998544
No 151
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=31.63 E-value=1.8e+02 Score=26.30 Aligned_cols=58 Identities=14% Similarity=0.168 Sum_probs=47.8
Q ss_pred HHHHHhhCCC-ceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEe
Q 037639 80 TRTVQQKNPA-VKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDI 137 (361)
Q Consensus 80 ~~~lk~~~~~-~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidi 137 (361)
+++++...+. ..+++.=-||-.+...+.....+.+++..|+++++.-|+..|+|=+-|
T Consensus 221 ~e~vqsa~g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~~G~d~fvf 279 (305)
T COG5309 221 LERVQSACGTKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRSCGYDVFVF 279 (305)
T ss_pred HHHHHHhcCCCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhccCccEEEe
Confidence 4566665555 788888889977777788888899999999999999999999887665
No 152
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=31.45 E-value=99 Score=27.72 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=31.4
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCccchhhHHHHHHHHHHHHHHH
Q 037639 111 SQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAE 164 (361)
Q Consensus 111 ~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~~ 164 (361)
.++..|+.+++ ++++..++++||+-||--.- --..++++++.+++..
T Consensus 142 ~n~~v~~~i~~-~~~~w~~~giDGfR~D~~~~------~~~~~~~~~~~~~~~~ 188 (316)
T PF00128_consen 142 ENPEVREYIID-VLKFWIEEGIDGFRLDAAKH------IPKEFWKEFRDEVKEE 188 (316)
T ss_dssp TSHHHHHHHHH-HHHHHHHTTESEEEETTGGG------SSHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcc-cccchhhceEeEEEEccccc------cchhhHHHHhhhhhhh
Confidence 35667777777 66665566799999996321 1127777777777765
No 153
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=31.37 E-value=1.8e+02 Score=24.46 Aligned_cols=63 Identities=13% Similarity=0.150 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHhhCCCceEEEEEcCCCCCchhHHHHh-cCHHHHHHHHHHHHHHHHcCCCcEEE
Q 037639 73 QAIFSSFTRTVQQKNPAVKALLSIGGGNASKESFAAMA-SQAASRKSFIDSSINLARSLNFHGLD 136 (361)
Q Consensus 73 ~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~-~~~~~r~~f~~~l~~~l~~~~~DGid 136 (361)
......|++.+++++|.+.|++.=--... ...|.... ...+...+..+.+++-+++.|...|.
T Consensus 77 ~~~~~~fv~~iR~~hP~tPIllv~~~~~~-~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~ 140 (178)
T PF14606_consen 77 RERLDGFVKTIREAHPDTPILLVSPIPYP-AGYFDNSRGETVEEFREALREAVEQLRKEGDKNLY 140 (178)
T ss_dssp HHHHHHHHHHHHTT-SSS-EEEEE----T-TTTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEE
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEecCCcc-ccccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEE
Confidence 46678899999999999988854211111 11222111 12233445555566666666655444
No 154
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=31.22 E-value=3.3e+02 Score=23.14 Aligned_cols=25 Identities=16% Similarity=-0.020 Sum_probs=15.0
Q ss_pred EEeeecCCCccchhhHHHHHHHHHH
Q 037639 135 LDIDWEYPDNAQMSDFGTLLTEWRS 159 (361)
Q Consensus 135 idiD~e~~~~~~~~~~~~~l~~l~~ 159 (361)
-++|||....+|..-|.+=+.+||.
T Consensus 124 ~~~~~e~~te~Deki~~RE~~RLrl 148 (230)
T COG1768 124 PSFDSEPLTEQDEKIFLREIGRLRL 148 (230)
T ss_pred CCCCcCccchhHHHHHHHHHHHHHH
Confidence 3467776555666666655555554
No 155
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=30.78 E-value=95 Score=27.71 Aligned_cols=46 Identities=13% Similarity=0.114 Sum_probs=28.2
Q ss_pred HHHHHHHHHcCCCcEEEeeecCCCccchhhHHHHHHHHHHHHHHHH
Q 037639 120 IDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAEA 165 (361)
Q Consensus 120 ~~~l~~~l~~~~~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~~~ 165 (361)
....++.+++.|||||+|-...+..-....-..-++++++.+.+.|
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~g 60 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQ 60 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcC
Confidence 4567889999999999994322211000001234677888887764
No 156
>PRK15240 resistance to complement killing; Provisional
Probab=30.77 E-value=57 Score=27.65 Aligned_cols=34 Identities=24% Similarity=0.145 Sum_probs=17.2
Q ss_pred CCCcchhHHHHHHHHHh-hhhcccCCCcEEEEEeC
Q 037639 1 MAPKILPVLLSFTLLLL-QLHSSAGQNAVKAAYWF 34 (361)
Q Consensus 1 M~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~~y~~ 34 (361)
|+++.+++++++.+++. ++.+++..+-+-+||-.
T Consensus 1 Mkk~~~~~~~~~~~~~~~~~~a~a~~~t~s~GYaq 35 (185)
T PRK15240 1 MKKIVLSSLLLSAAGLAAVPVAQADTHSVSVGYAQ 35 (185)
T ss_pred CchhHHHHHHHHHHHhcchhhhccCCCEEEEEEEE
Confidence 76554444443333333 22333334677788884
No 157
>PRK09989 hypothetical protein; Provisional
Probab=30.55 E-value=96 Score=27.50 Aligned_cols=36 Identities=11% Similarity=0.167 Sum_probs=25.3
Q ss_pred HHHHHHHHcCCCcEEEeeecCCCccchhhHHHHHHHHHHHHHHHH
Q 037639 121 DSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAEA 165 (361)
Q Consensus 121 ~~l~~~l~~~~~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~~~ 165 (361)
...++.+++.|||||+|-..+. . -.+++++.+.+.|
T Consensus 18 ~~~l~~~~~~Gfd~VEl~~~~~--~-------~~~~~~~~l~~~G 53 (258)
T PRK09989 18 IERFAAARKAGFDAVEFLFPYD--Y-------STLQIQKQLEQNH 53 (258)
T ss_pred HHHHHHHHHcCCCEEEECCccc--C-------CHHHHHHHHHHcC
Confidence 3567889999999999954221 1 1567888887764
No 158
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=30.51 E-value=52 Score=23.66 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=12.6
Q ss_pred CCCcchhHHHHHHHHHhhh
Q 037639 1 MAPKILPVLLSFTLLLLQL 19 (361)
Q Consensus 1 M~~~~~~~~l~~~~l~~~~ 19 (361)
|+++.|++-|+.+.|..++
T Consensus 1 MaRRlwiLslLAVtLtVAL 19 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVAL 19 (100)
T ss_pred CchhhHHHHHHHHHHHHHh
Confidence 8888777666666655543
No 159
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=30.00 E-value=4.2e+02 Score=24.05 Aligned_cols=73 Identities=15% Similarity=0.209 Sum_probs=37.0
Q ss_pred CceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc---cchhhHHHHHHHHHHHHHHHH
Q 037639 89 AVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN---AQMSDFGTLLTEWRSAVAAEA 165 (361)
Q Consensus 89 ~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~---~~~~~~~~~l~~l~~~l~~~~ 165 (361)
.+.|++|+.|... + ..+.++.. ++.++ -+.|.++|++-.|.. .+...-..+..++.+..++.-
T Consensus 96 ~~pvi~Si~~~~~--~----------~~~d~~~~-a~~~~-~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~~ 161 (295)
T PF01180_consen 96 DIPVIASINGDSE--E----------EIEDWAEL-AKRLE-AGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREAV 161 (295)
T ss_dssp CEEEEEEE-TSSS--G----------HHHHHHHH-HHHHH-HHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEeecCCc--h----------hHHHHHHH-HHHhc-CcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhcc
Confidence 6899999998641 1 12222222 22233 468999999987754 222223334444443333321
Q ss_pred HhcCCCceEEEEEeec
Q 037639 166 RSSGKPALLLTAAVSY 181 (361)
Q Consensus 166 ~~~~~~~~~ls~a~~~ 181 (361)
..-+.+-+++
T Consensus 162 ------~~Pv~vKL~p 171 (295)
T PF01180_consen 162 ------DIPVFVKLSP 171 (295)
T ss_dssp ------SSEEEEEE-S
T ss_pred ------CCCEEEEecC
Confidence 1456666665
No 160
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=29.92 E-value=2.6e+02 Score=24.51 Aligned_cols=64 Identities=11% Similarity=0.240 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHhhCCCceEEEEEcCCCCCchhHH-----HHh----cCHHHHHHHHHHHHHHHHcCCCcEEEe
Q 037639 73 QAIFSSFTRTVQQKNPAVKALLSIGGGNASKESFA-----AMA----SQAASRKSFIDSSINLARSLNFHGLDI 137 (361)
Q Consensus 73 ~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~-----~~~----~~~~~r~~f~~~l~~~l~~~~~DGidi 137 (361)
.++++++++.+|+..|..+|++---+.- +.+.+. ..+ ...+....+++.+++..++-|+++||+
T Consensus 99 ~dNlr~iv~~lks~~~~~riIlitPpp~-de~~~~~~~~e~~~~~~~RtNe~~~~Ya~ac~~la~e~~l~~vdl 171 (245)
T KOG3035|consen 99 KDNLRKIVSHLKSLSPETRIILITPPPV-DEEAWEKQEQEPYVLGPERTNETVGTYAKACANLAQEIGLYVVDL 171 (245)
T ss_pred HHHHHHHHHHhhccCCcceEEEecCCCc-CHHHHHHHhccchhccchhhhhHHHHHHHHHHHHHHHhCCeeeeH
Confidence 4567778888888888787775322221 122121 111 234566778999999999999999999
No 161
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=29.67 E-value=1.1e+02 Score=30.19 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCccchhhHHHHHHHHHHHHHH
Q 037639 112 QAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAA 163 (361)
Q Consensus 112 ~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~ 163 (361)
+++.|+.+.+.+..+++++|+||+-||--.-.. ..|++++++++++
T Consensus 207 np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~------~~f~~~~~~~~~~ 252 (479)
T PRK09441 207 HPEVREELKYWAKWYMETTGFDGFRLDAVKHID------AWFIKEWIEHVRE 252 (479)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCC------HHHHHHHHHHHHH
Confidence 577788888766666677999999999632211 2455666655543
No 162
>PRK14866 hypothetical protein; Provisional
Probab=29.62 E-value=1.6e+02 Score=28.76 Aligned_cols=69 Identities=13% Similarity=0.108 Sum_probs=44.3
Q ss_pred CCceEEEEEcCCCCCchhHHHHhcCHH----------HHHHHH-H-HHHHHHHcCCCcEEEeeecCCCccchhhHHHHHH
Q 037639 88 PAVKALLSIGGGNASKESFAAMASQAA----------SRKSFI-D-SSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLT 155 (361)
Q Consensus 88 ~~~kvllsigg~~~~~~~~~~~~~~~~----------~r~~f~-~-~l~~~l~~~~~DGidiD~e~~~~~~~~~~~~~l~ 155 (361)
...++++.|||.=+ ...|+.++.... .-..+- . .+.+.+.+.+.|.+-|||......++..+..+++
T Consensus 183 ~~~~~~iG~GGgHY-apr~t~i~le~~~~~GHi~pky~l~~l~~~~~i~~a~~~~~~~~a~iD~Ks~k~~~r~~i~~~l~ 261 (451)
T PRK14866 183 HTDRPLVGFGGGHY-APRQTRIVLETDWAFGHIAADWQLGALGDPAVLRAAFEASGADAAYIDRKAMSSGDRPRLEALLE 261 (451)
T ss_pred cCCCEEEEeCCCCc-chhHHHHhhcCCeeEEeeccccchhccCcHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHHHHH
Confidence 46789999999755 455554443210 000011 1 3444555678999999998877788888888777
Q ss_pred HH
Q 037639 156 EW 157 (361)
Q Consensus 156 ~l 157 (361)
++
T Consensus 262 ~l 263 (451)
T PRK14866 262 EL 263 (451)
T ss_pred HC
Confidence 65
No 163
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=29.60 E-value=64 Score=27.09 Aligned_cols=39 Identities=13% Similarity=0.179 Sum_probs=27.5
Q ss_pred HHHHcCCCcEEEeeecCCCccchhhHHHHHHHHHHHHHHHH
Q 037639 125 NLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAEA 165 (361)
Q Consensus 125 ~~l~~~~~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~~~ 165 (361)
+.+++.|||||+|........... ..-++++++.+++.|
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~~~--~~~~~~~~~~~~~~g 40 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWDEK--DDEAEELRRLLEDYG 40 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHTHH--HHHHHHHHHHHHHTT
T ss_pred hHHHHcCCCEEEEecCCCcccccc--hHHHHHHHHHHHHcC
Confidence 578899999999987644331111 566778888888765
No 164
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=29.32 E-value=1e+02 Score=27.54 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCCcEEEeeecCCCc-cchhhH-HHHHHHHHHHHHHHH
Q 037639 121 DSSINLARSLNFHGLDIDWEYPDN-AQMSDF-GTLLTEWRSAVAAEA 165 (361)
Q Consensus 121 ~~l~~~l~~~~~DGidiD~e~~~~-~~~~~~-~~~l~~l~~~l~~~~ 165 (361)
...++.+++.|||||+|....+.. .....+ ..-++++++.+++.|
T Consensus 19 ~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 65 (284)
T PRK13210 19 EERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETG 65 (284)
T ss_pred HHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcC
Confidence 457888999999999997543211 000111 234778888888875
No 165
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=29.30 E-value=1.4e+02 Score=28.45 Aligned_cols=44 Identities=11% Similarity=0.206 Sum_probs=27.8
Q ss_pred HHHHHHHcCCCcEEEeeec--CCCccchhhHHHHHHHHHHHHHHHH
Q 037639 122 SSINLARSLNFHGLDIDWE--YPDNAQMSDFGTLLTEWRSAVAAEA 165 (361)
Q Consensus 122 ~l~~~l~~~~~DGidiD~e--~~~~~~~~~~~~~l~~l~~~l~~~~ 165 (361)
..+.-+++.|||||++... +|.......-..-++++++.+++.|
T Consensus 36 e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~G 81 (382)
T TIGR02631 36 EAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETG 81 (382)
T ss_pred HHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhC
Confidence 3456688999999999633 1222221222344778888888875
No 166
>PRK08508 biotin synthase; Provisional
Probab=28.84 E-value=2.4e+02 Score=25.53 Aligned_cols=68 Identities=7% Similarity=0.143 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHhhCCCceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc-----cch
Q 037639 73 QAIFSSFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN-----AQM 147 (361)
Q Consensus 73 ~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~-----~~~ 147 (361)
...+.++++.+|+..|++++..+.|-. ....++.|++.|+|.+.++.|-... ...
T Consensus 74 ~e~~~ei~~~ik~~~p~l~i~~s~G~~--------------------~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~ 133 (279)
T PRK08508 74 LEYVAEAAKAVKKEVPGLHLIACNGTA--------------------SVEQLKELKKAGIFSYNHNLETSKEFFPKICTT 133 (279)
T ss_pred HHHHHHHHHHHHhhCCCcEEEecCCCC--------------------CHHHHHHHHHcCCCEEcccccchHHHhcCCCCC
Confidence 345667777888888888887775432 1356778899999999999885321 123
Q ss_pred hhHHHHHHHHHHH
Q 037639 148 SDFGTLLTEWRSA 160 (361)
Q Consensus 148 ~~~~~~l~~l~~~ 160 (361)
..+..-++.++.+
T Consensus 134 ~~~~~~l~~i~~a 146 (279)
T PRK08508 134 HTWEERFQTCENA 146 (279)
T ss_pred CCHHHHHHHHHHH
Confidence 4455655555553
No 167
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=28.26 E-value=4.4e+02 Score=24.51 Aligned_cols=64 Identities=13% Similarity=0.133 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhCCCceEEEEEcCCCC---CchhHHHH----------------------------hcCHHHHHHHHHHHH
Q 037639 76 FSSFTRTVQQKNPAVKALLSIGGGNA---SKESFAAM----------------------------ASQAASRKSFIDSSI 124 (361)
Q Consensus 76 ~~~~~~~lk~~~~~~kvllsigg~~~---~~~~~~~~----------------------------~~~~~~r~~f~~~l~ 124 (361)
..++++.||++ ++|+++.+--.-. ....|... ..+++.|+=|.+.+
T Consensus 66 p~~m~~~l~~~--g~~~~~~~~P~v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~- 142 (339)
T cd06604 66 PKELIKELHEQ--GFKVVTIIDPGVKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLY- 142 (339)
T ss_pred HHHHHHHHHHC--CCEEEEEEeCceeCCCCChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHH-
Confidence 35677888888 8888876532210 01122211 23667777665544
Q ss_pred HHHHcCCCcEEEeeecCC
Q 037639 125 NLARSLNFHGLDIDWEYP 142 (361)
Q Consensus 125 ~~l~~~~~DGidiD~e~~ 142 (361)
+-+.+.|+||+=+|.-.|
T Consensus 143 ~~~~~~Gvdg~w~D~~Ep 160 (339)
T cd06604 143 KKFVDLGVDGIWNDMNEP 160 (339)
T ss_pred HHHhhCCCceEeecCCCc
Confidence 445589999999998544
No 168
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=28.19 E-value=3.2e+02 Score=24.95 Aligned_cols=64 Identities=11% Similarity=0.083 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhCCCceEEEEEcCCC-CCchhHHHH----------------------------hcCHHHHHHHHHHHHHH
Q 037639 76 FSSFTRTVQQKNPAVKALLSIGGGN-ASKESFAAM----------------------------ASQAASRKSFIDSSINL 126 (361)
Q Consensus 76 ~~~~~~~lk~~~~~~kvllsigg~~-~~~~~~~~~----------------------------~~~~~~r~~f~~~l~~~ 126 (361)
..++++.+|++ |+|+++.+--.- .++..|... ..+++.|+=+. +.++.
T Consensus 68 ~~~~i~~l~~~--G~~~~~~~~P~i~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~-~~~~~ 144 (308)
T cd06593 68 PEGMLSRLKEK--GFKVCLWINPYIAQKSPLFKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYK-DKLKP 144 (308)
T ss_pred HHHHHHHHHHC--CCeEEEEecCCCCCCchhHHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHH-HHHHH
Confidence 45778888887 888887664211 112223221 34666775554 55556
Q ss_pred HHcCCCcEEEeeecCC
Q 037639 127 ARSLNFHGLDIDWEYP 142 (361)
Q Consensus 127 l~~~~~DGidiD~e~~ 142 (361)
+.+.|+||+-+|+-.+
T Consensus 145 ~~~~Gid~~~~D~~e~ 160 (308)
T cd06593 145 LLDMGVDCFKTDFGER 160 (308)
T ss_pred HHHhCCcEEecCCCCC
Confidence 6678999999998543
No 169
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=28.18 E-value=83 Score=22.40 Aligned_cols=30 Identities=3% Similarity=0.122 Sum_probs=26.7
Q ss_pred hhHHHHhcCHHHHHHHHHHHHHHHHcCCCc
Q 037639 104 ESFAAMASQAASRKSFIDSSINLARSLNFH 133 (361)
Q Consensus 104 ~~~~~~~~~~~~r~~f~~~l~~~l~~~~~D 133 (361)
..|.....+++.|++|.++=-.++++|+++
T Consensus 7 ~~~~~~~~~~~~re~f~~dp~a~~~~~~Lt 36 (77)
T cd07321 7 KLLEQLLVKPEVKERFKADPEAVLAEYGLT 36 (77)
T ss_pred HHHHHHhcCHHHHHHHHhCHHHHHHHcCCC
Confidence 456778889999999999999999999886
No 170
>PRK13840 sucrose phosphorylase; Provisional
Probab=27.96 E-value=2e+02 Score=28.62 Aligned_cols=54 Identities=7% Similarity=0.029 Sum_probs=34.9
Q ss_pred hcCHHHHHHHHHHHHHHHHcCCCcEEEeee-----cCCCc--cchhhHHHHHHHHHHHHHHH
Q 037639 110 ASQAASRKSFIDSSINLARSLNFHGLDIDW-----EYPDN--AQMSDFGTLLTEWRSAVAAE 164 (361)
Q Consensus 110 ~~~~~~r~~f~~~l~~~l~~~~~DGidiD~-----e~~~~--~~~~~~~~~l~~l~~~l~~~ 164 (361)
..|++.++.+.+-+ .+..+.|+||+-||- +.++. .....-..|++++|..++..
T Consensus 166 ~~NP~V~~~i~~il-~fwl~~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~~~~~~ 226 (495)
T PRK13840 166 VHSAAGWEYLMSIL-DRFAASHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAKEARAR 226 (495)
T ss_pred CCCHHHHHHHHHHH-HHHHHCCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHHHhhhc
Confidence 34777777777655 555567999999984 22322 22244567888888877643
No 171
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=27.67 E-value=3.2e+02 Score=23.48 Aligned_cols=88 Identities=9% Similarity=-0.008 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEeee-cCC-CccchhhHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecccccccCCCC
Q 037639 114 ASRKSFIDSSINLARSLNFHGLDIDW-EYP-DNAQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINP 191 (361)
Q Consensus 114 ~~r~~f~~~l~~~l~~~~~DGidiD~-e~~-~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~ 191 (361)
.....+...+.+.+++.+.+-+.||= ... ...+...+..++..+...+++.+ .+.-++....... ....
T Consensus 98 ~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~-------~t~llt~~~~~~~--~~~~ 168 (226)
T PF06745_consen 98 NDLEELLSKIREAIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRG-------VTTLLTSEMPSGS--EDDG 168 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTT-------EEEEEEEEESSSS--SSSS
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCC-------CEEEEEEccccCc--cccc
Confidence 34677888999999998889999983 222 22566778889999988887653 3322222211111 1112
Q ss_pred hhhHhc-cCCeEEeeeeccC
Q 037639 192 TSAISN-SLDWTNVMAYDFF 210 (361)
Q Consensus 192 ~~~l~~-~vD~v~lm~yd~~ 210 (361)
...+.. .+|-|+.+.+...
T Consensus 169 ~~~i~~~l~D~vI~L~~~~~ 188 (226)
T PF06745_consen 169 TFGIEHYLADGVIELRYEEE 188 (226)
T ss_dssp STSHHHHHSSEEEEEEEEEE
T ss_pred ccchhhhcccEEEEEEEEee
Confidence 234566 8999999998766
No 172
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=27.55 E-value=1.1e+02 Score=28.12 Aligned_cols=56 Identities=14% Similarity=0.060 Sum_probs=41.1
Q ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc----cchhhHHHHHHHHHHHHHH
Q 037639 108 AMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN----AQMSDFGTLLTEWRSAVAA 163 (361)
Q Consensus 108 ~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~----~~~~~~~~~l~~l~~~l~~ 163 (361)
.++++++..+-....+.++|.+|+|+|.|.=.-.... +....+..-+.+|-.+++.
T Consensus 139 Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~ 198 (394)
T COG0050 139 DMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDS 198 (394)
T ss_pred cccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHh
Confidence 4677888888889999999999999999875432222 3444467777777777765
No 173
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=27.24 E-value=1.2e+02 Score=26.94 Aligned_cols=42 Identities=19% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCcEEEeeecCCCccchhhHHHHHHHHHHHHHHHHHhcCCCceEEEE
Q 037639 120 IDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAEARSSGKPALLLTA 177 (361)
Q Consensus 120 ~~~l~~~l~~~~~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~ 177 (361)
....++.+++.|||||+|-...... ++++++.+++.| +.++.
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~~~~~~---------~~~~~~~l~~~g-------l~~~~ 58 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMFPYDYD---------IEELKQVLASNK-------LEHTL 58 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCC---------HHHHHHHHHHcC-------CcEEE
No 174
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=26.97 E-value=72 Score=19.11 Aligned_cols=6 Identities=33% Similarity=0.052 Sum_probs=2.9
Q ss_pred CCCcch
Q 037639 1 MAPKIL 6 (361)
Q Consensus 1 M~~~~~ 6 (361)
|+..++
T Consensus 1 Mk~l~~ 6 (36)
T PF08194_consen 1 MKCLSL 6 (36)
T ss_pred CceeHH
Confidence 554444
No 175
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=26.96 E-value=1.7e+02 Score=29.59 Aligned_cols=49 Identities=22% Similarity=0.348 Sum_probs=34.6
Q ss_pred HHHHHHHHcCCCcEEEeeecCCCccchh-hHHHHHHHHHHHHHHHHHhcC
Q 037639 121 DSSINLARSLNFHGLDIDWEYPDNAQMS-DFGTLLTEWRSAVAAEARSSG 169 (361)
Q Consensus 121 ~~l~~~l~~~~~DGidiD~e~~~~~~~~-~~~~~l~~l~~~l~~~~~~~~ 169 (361)
+++++++.+.|+|=.-|||..|+.+++. .|...++.+.++++...+.++
T Consensus 237 ~SlVr~lv~qG~~VflIsW~nP~~~~r~~~ldDYv~~i~~Ald~V~~~tG 286 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISWRNPDKAHREWGLSTYVDALKEAVDAVRAITG 286 (560)
T ss_pred chHHHHHHHcCCeEEEEeCCCCChhhcCCCHHHHHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999875442 345555555555555443333
No 176
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=26.80 E-value=1.9e+02 Score=32.40 Aligned_cols=65 Identities=11% Similarity=0.150 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHhhCCCceEEEEEcC-CCC--------------Cchh--------------H-----HHHhcCHHHHHH
Q 037639 73 QAIFSSFTRTVQQKNPAVKALLSIGG-GNA--------------SKES--------------F-----AAMASQAASRKS 118 (361)
Q Consensus 73 ~~~~~~~~~~lk~~~~~~kvllsigg-~~~--------------~~~~--------------~-----~~~~~~~~~r~~ 118 (361)
...++++++.+|++ |++|++-+=- .+. +... + ..-..++..++-
T Consensus 246 ~~efk~lV~~~H~~--GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~ 323 (1221)
T PRK14510 246 EEEFAQAIKEAQSA--GIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRL 323 (1221)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHH
Confidence 35688999999988 9999976411 000 0000 0 011235677777
Q ss_pred HHHHHHHHHHcCCCcEEEeeec
Q 037639 119 FIDSSINLARSLNFHGLDIDWE 140 (361)
Q Consensus 119 f~~~l~~~l~~~~~DGidiD~e 140 (361)
.++++.-+++ +++||+-||.-
T Consensus 324 i~d~lr~Wv~-~gVDGfRfDla 344 (1221)
T PRK14510 324 PMDVLRSWAK-RGVDGFRLDLA 344 (1221)
T ss_pred HHHHHHHHHH-hCCCEEEEech
Confidence 7788888888 99999999964
No 177
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=26.73 E-value=3e+02 Score=23.95 Aligned_cols=66 Identities=8% Similarity=-0.061 Sum_probs=42.5
Q ss_pred HHHHcCCCcEEEeeecCCCccchhhHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecccccccCCCChhhHhccCCeEEe
Q 037639 125 NLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNV 204 (361)
Q Consensus 125 ~~l~~~~~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~l 204 (361)
..+.+.|.|=|-+..|.. ..+.++++.+|+. | ....+++.+..... .+..+.+.+|.|.+
T Consensus 75 ~~~~~~gad~i~~H~Ea~-----~~~~~~l~~ik~~----g-------~k~GlalnP~Tp~~----~i~~~l~~~D~vlv 134 (220)
T PRK08883 75 PDFAKAGASMITFHVEAS-----EHVDRTLQLIKEH----G-------CQAGVVLNPATPLH----HLEYIMDKVDLILL 134 (220)
T ss_pred HHHHHhCCCEEEEcccCc-----ccHHHHHHHHHHc----C-------CcEEEEeCCCCCHH----HHHHHHHhCCeEEE
Confidence 445557899999999842 3355666666552 2 44555555432221 35677889999999
Q ss_pred eeeccC
Q 037639 205 MAYDFF 210 (361)
Q Consensus 205 m~yd~~ 210 (361)
|+-+..
T Consensus 135 MtV~PG 140 (220)
T PRK08883 135 MSVNPG 140 (220)
T ss_pred EEecCC
Confidence 998655
No 178
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=26.47 E-value=2e+02 Score=26.89 Aligned_cols=45 Identities=4% Similarity=0.049 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHcCCCcEEEeeecCCCc-----------cchhhHHHHHHHHHHHHH
Q 037639 118 SFIDSSINLARSLNFHGLDIDWEYPDN-----------AQMSDFGTLLTEWRSAVA 162 (361)
Q Consensus 118 ~f~~~l~~~l~~~~~DGidiD~e~~~~-----------~~~~~~~~~l~~l~~~l~ 162 (361)
.+++.++..+.+.|+.||.++|..-+. .+...+..++..+++.+.
T Consensus 91 ~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~~p~~yh~G~t~D~~~~l~~l~~~~~ 146 (345)
T COG0429 91 PYARGLMRALSRRGWLVVVFHFRGCSGEANTSPRLYHSGETEDIRFFLDWLKARFP 146 (345)
T ss_pred HHHHHHHHHHHhcCCeEEEEecccccCCcccCcceecccchhHHHHHHHHHHHhCC
Confidence 488899999999999999999985332 344667777777776543
No 179
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=26.39 E-value=7.3e+02 Score=25.84 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEe
Q 037639 88 PAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDI 137 (361)
Q Consensus 88 ~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidi 137 (361)
|.-.|+|++...-. .+...+.-.|++||+-.+-+
T Consensus 105 P~K~VaLTFDDGy~----------------s~yt~A~PILkkygvpATfF 138 (671)
T PRK14582 105 PEKAVLLTFDDGYS----------------SFYTRVFPILQAFQWPAVWA 138 (671)
T ss_pred CCCeEEEEEEcCCC----------------chHHHHHHHHHHcCCCEEEE
Confidence 56778899876421 13345788899999877643
No 180
>COG3317 NlpB Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=26.09 E-value=1.6e+02 Score=27.40 Aligned_cols=19 Identities=5% Similarity=-0.050 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCCCcEEE
Q 037639 118 SFIDSSINLARSLNFHGLD 136 (361)
Q Consensus 118 ~f~~~l~~~l~~~~~DGid 136 (361)
..-..+.++++++||+++.
T Consensus 110 ~~Wpqv~~~~qE~gf~i~~ 128 (342)
T COG3317 110 YLWPQVRRFLQENGFRIAS 128 (342)
T ss_pred HhHHHHHHHHHHcCCcccc
Confidence 4566789999999998875
No 181
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=25.87 E-value=3.5e+02 Score=21.81 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHhhCCCceEEE-EEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEee
Q 037639 73 QAIFSSFTRTVQQKNPAVKALL-SIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDID 138 (361)
Q Consensus 73 ~~~~~~~~~~lk~~~~~~kvll-sigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD 138 (361)
...+.++++.+++++|+++|++ ++--... ... .........+++.+.+.++.+++++.=||+.
T Consensus 74 ~~~~~~l~~~~~~~~p~~~vi~~~~~p~~~--~~~-~~~~~~~~~~~~n~~l~~~a~~~~~~~id~~ 137 (174)
T cd01841 74 IKWYRDIIEQIREEFPNTKIYLLSVLPVLE--EDE-IKTRSNTRIQRLNDAIKELAPELGVTFIDLN 137 (174)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeeCCcCc--ccc-cccCCHHHHHHHHHHHHHHHHHCCCEEEEcH
Confidence 4567888888998889998774 4322111 110 0011235667788888888888886666653
No 182
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=25.41 E-value=93 Score=29.21 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHHcCCceEEEeeecC
Q 037639 325 DDTQSVNTKVKYAKDNGLLGYFAWQISQ 352 (361)
Q Consensus 325 ~d~~S~~~K~~~~~~~gl~Gv~iW~l~~ 352 (361)
.++++++..+++|+++|+-|+.+|---.
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Ywf 82 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYWF 82 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeeec
Confidence 5899999999999999999999987665
No 183
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=25.38 E-value=2.2e+02 Score=28.22 Aligned_cols=68 Identities=7% Similarity=0.030 Sum_probs=42.7
Q ss_pred CceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCccchhhHHHHHHHHHHHHHHHHHhc
Q 037639 89 AVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAEARSS 168 (361)
Q Consensus 89 ~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~~~~~~ 168 (361)
.+|++.+||-...+ + ..+.-|-+.|.|.+-|++-+...++.......++++.+.++..
T Consensus 3 ~tkIi~TiGp~s~~----------~--------e~l~~li~aG~~v~RiN~sHg~~~~~~~~i~~vr~~~~~~~~~---- 60 (480)
T cd00288 3 RTKIVCTIGPATDS----------V--------ENLKKLIKAGMNVARMNFSHGSHEYHQSRIDNVREAAEKTGGP---- 60 (480)
T ss_pred CCeEEEEeCCCCCC----------H--------HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHHHHHhCCC----
Confidence 58999999876431 1 1344455579999999998765555555555555554444321
Q ss_pred CCCceEEEEEeecc
Q 037639 169 GKPALLLTAAVSYS 182 (361)
Q Consensus 169 ~~~~~~ls~a~~~~ 182 (361)
.-+.+.++.+
T Consensus 61 ----i~il~Dl~Gp 70 (480)
T cd00288 61 ----VAIALDTKGP 70 (480)
T ss_pred ----eEEEEecCCC
Confidence 4566666654
No 184
>PRK09408 ompX outer membrane protein X; Provisional
Probab=24.73 E-value=89 Score=26.14 Aligned_cols=34 Identities=18% Similarity=0.078 Sum_probs=17.7
Q ss_pred CCCcchhHHHHHHHHHhhhhcccCCCcEEEEEeC
Q 037639 1 MAPKILPVLLSFTLLLLQLHSSAGQNAVKAAYWF 34 (361)
Q Consensus 1 M~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~y~~ 34 (361)
|++.+++.+++.++++....++.+++-+.+||-.
T Consensus 1 mkk~~~~~~~~~~~~~~~~~~~~~~~t~s~GYaq 34 (171)
T PRK09408 1 MKKIACLSALACVLAVTAGTAVAATSTVTGGYAQ 34 (171)
T ss_pred CceEehHHHHHHHHHHhhhhhhcccceEEEEEEE
Confidence 7755554444323333222244444678889885
No 185
>PRK06247 pyruvate kinase; Provisional
Probab=24.30 E-value=2.3e+02 Score=27.98 Aligned_cols=69 Identities=13% Similarity=0.141 Sum_probs=45.0
Q ss_pred CCceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCccchhhHHHHHHHHHHHHHHHHHh
Q 037639 88 PAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAEARS 167 (361)
Q Consensus 88 ~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~~~~~ 167 (361)
..+|++.+||-...+ + ..+.-|-+.|.|.+-|++-+...++.....+.++++.+.++.
T Consensus 5 r~tKIi~TiGPas~~----------~--------e~l~~li~aGm~v~RlN~SHg~~e~~~~~i~~vr~~~~~~~~---- 62 (476)
T PRK06247 5 RRVKILATLGPASSS----------E--------DMIRKLVEAGADVFRLNFSHGDHDDHRELYKRIREVEDETGR---- 62 (476)
T ss_pred CCceEEEEECCCcCC----------H--------HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCC----
Confidence 369999999975431 1 234455567999999999876666666666666666554432
Q ss_pred cCCCceEEEEEeecc
Q 037639 168 SGKPALLLTAAVSYS 182 (361)
Q Consensus 168 ~~~~~~~ls~a~~~~ 182 (361)
+.-+-+.++.+
T Consensus 63 ----~i~Il~Dl~Gp 73 (476)
T PRK06247 63 ----PIGILADLQGP 73 (476)
T ss_pred ----CeeEEEeCCCC
Confidence 15566666654
No 186
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=24.28 E-value=3.9e+02 Score=24.68 Aligned_cols=65 Identities=14% Similarity=0.182 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhCCCceEEEEEcCCCC-Cchh-HHHH----------------------------hcCHHHHHHHHHHHHH
Q 037639 76 FSSFTRTVQQKNPAVKALLSIGGGNA-SKES-FAAM----------------------------ASQAASRKSFIDSSIN 125 (361)
Q Consensus 76 ~~~~~~~lk~~~~~~kvllsigg~~~-~~~~-~~~~----------------------------~~~~~~r~~f~~~l~~ 125 (361)
..++++.||++ |+|+++.|--.-. ++.. |..+ ..+++.|+=+.+.+.+
T Consensus 73 p~~mi~~Lh~~--G~~~~~~i~P~v~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~ 150 (317)
T cd06594 73 LDELIEELKAR--GIRVLTYINPYLADDGPLYYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKE 150 (317)
T ss_pred HHHHHHHHHHC--CCEEEEEecCceecCCchhHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHH
Confidence 46788889988 8999887754311 1122 2322 1257888888899988
Q ss_pred HHHcCCCcEEEeeecCC
Q 037639 126 LARSLNFHGLDIDWEYP 142 (361)
Q Consensus 126 ~l~~~~~DGidiD~e~~ 142 (361)
++.++|+||+=+|+..+
T Consensus 151 ~~~~~Gvdg~w~D~~E~ 167 (317)
T cd06594 151 MLLDLGLSGWMADFGEY 167 (317)
T ss_pred HhhhcCCcEEEecCCCC
Confidence 88889999999998443
No 187
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=24.09 E-value=4.3e+02 Score=23.48 Aligned_cols=108 Identities=18% Similarity=0.266 Sum_probs=58.0
Q ss_pred EeeCCCcEEEeCCcchHHHHHHHHHHHhhCCCceEE-EEEcCCCCCchhHHHHhcCHHHHHH---HHHHHHHHHHcCC--
Q 037639 58 DLDSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKAL-LSIGGGNASKESFAAMASQAASRKS---FIDSSINLARSLN-- 131 (361)
Q Consensus 58 ~v~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvl-lsigg~~~~~~~~~~~~~~~~~r~~---f~~~l~~~l~~~~-- 131 (361)
.||....++.--+++.....++.+.+.+. ++.+= +.+.+. +.|.---.|++.|++ .-...+.+.++.|
T Consensus 38 SvDEsDeRLaRLDWs~~er~~l~~ai~et--gv~ipSmClSaH----RRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIR 111 (287)
T COG3623 38 SVDESDERLARLDWSKEERLALVNAIQET--GVRIPSMCLSAH----RRFPFGSKDEATRQQALEIMEKAIQLAQDLGIR 111 (287)
T ss_pred eccchHHHHHhcCCCHHHHHHHHHHHHHh--CCCccchhhhhh----ccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCce
Confidence 34433334444566666666777777776 44332 222222 222222345555554 3345566666666
Q ss_pred ---CcEEEeeecCCCccchhhHHHHHHHHHHHHHHHHHhcCCCceEEEEEee
Q 037639 132 ---FHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVS 180 (361)
Q Consensus 132 ---~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a~~ 180 (361)
+-|.|..+|.. +.+.-..|++-|+.+..-..+ ..+++++.
T Consensus 112 tIQLAGYDVYYE~~---d~eT~~rFi~g~~~a~~lA~~------aqV~lAvE 154 (287)
T COG3623 112 TIQLAGYDVYYEEA---DEETRQRFIEGLKWAVELAAR------AQVMLAVE 154 (287)
T ss_pred eEeeccceeeeccC---CHHHHHHHHHHHHHHHHHHHh------hccEEEee
Confidence 67888889854 444555566666655443322 56666665
No 188
>PRK06354 pyruvate kinase; Provisional
Probab=24.08 E-value=1.9e+02 Score=29.48 Aligned_cols=73 Identities=8% Similarity=0.042 Sum_probs=44.9
Q ss_pred HhhCCCceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCccchhhHHHHHHHHHHHHHH
Q 037639 84 QQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAA 163 (361)
Q Consensus 84 k~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~ 163 (361)
+.....+|++.+||-...+ . ..+.-|-+.|.|.+-|++-+...++.....+.++++.+.++.
T Consensus 4 ~~~~r~tKIi~TiGPas~~----------~--------e~l~~li~aG~~v~RlN~sHg~~e~~~~~i~~ir~~~~~~~~ 65 (590)
T PRK06354 4 RDLMRRTKIVATIGPASES----------P--------EKLRQLIEAGATTARLNFSHGDHEEHGARIKNIREASKKLGK 65 (590)
T ss_pred CCCCCCceEEEeeCCCCCC----------H--------HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 4444579999999965431 1 234445567999999999876555555555555555544431
Q ss_pred HHHhcCCCceEEEEEeecc
Q 037639 164 EARSSGKPALLLTAAVSYS 182 (361)
Q Consensus 164 ~~~~~~~~~~~ls~a~~~~ 182 (361)
+.-+-+.++.+
T Consensus 66 --------~i~i~~Dl~Gp 76 (590)
T PRK06354 66 --------TVGILQDLQGP 76 (590)
T ss_pred --------CEEEEeeCCCC
Confidence 14555556544
No 189
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=24.05 E-value=1.7e+02 Score=25.34 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=30.2
Q ss_pred HHHHHHHHcCCCcEEEee--ecC-CCccchhhHHHHHHHHHHH
Q 037639 121 DSSINLARSLNFHGLDID--WEY-PDNAQMSDFGTLLTEWRSA 160 (361)
Q Consensus 121 ~~l~~~l~~~~~DGidiD--~e~-~~~~~~~~~~~~l~~l~~~ 160 (361)
+|+...++..+..|||+. .|. |+..|.....+|++.++..
T Consensus 166 eNv~~ai~~~~p~gvDvsSgvE~~~G~KD~~ki~~f~~~~~~~ 208 (210)
T PRK01222 166 DNVAEAIRQVRPYGVDVSSGVESAPGIKDPEKIRAFIEAVKSA 208 (210)
T ss_pred HHHHHHHHhcCCCEEEecCceECCCCCcCHHHHHHHHHHHHhh
Confidence 456666666677899997 575 6778888889999888653
No 190
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=23.62 E-value=5.4e+02 Score=26.20 Aligned_cols=105 Identities=8% Similarity=-0.030 Sum_probs=53.2
Q ss_pred CCCcEEEEEeCCCCCCCCCC----------CC--CCCCcEEEEEEEEeeC-----CCcEEE---eC--CcchHHHHHHHH
Q 037639 24 GQNAVKAAYWFSGSNFPVAD----------ID--SILFTHLFCAFADLDS-----QNFQVT---VS--SENQAIFSSFTR 81 (361)
Q Consensus 24 ~~~~~~~~y~~~~~~~~~~~----------~~--~~~~thii~~~~~v~~-----~~~~~~---~~--~~~~~~~~~~~~ 81 (361)
.-+..|+||.+..++..... .| .+.+.||||-.+.... ..+.+. +. +.+...+.-..+
T Consensus 428 gIp~eVlGFtt~aw~gg~~re~w~~~g~p~~PgRlN~l~hiiyk~ad~~wr~~r~~l~~mm~~~~~~eN~DGeAl~wa~~ 507 (600)
T TIGR01651 428 GVKVEILGFTTRAWKGGQSREKWLKAGKPAAPGRLNDLRHIIYKSADAPWRRARRNLGLMMREGLLKENIDGEALMWAHQ 507 (600)
T ss_pred CCCeEEEeecccccccccchHHHHhcCCCCCCcccchhhhhhhhccccchhhhccchhhhhhccccccCCchHHHHHHHH
Confidence 44567889987422221111 11 2347799987654330 111111 11 112334444445
Q ss_pred HHHhhCCCceEEEEEcCCCCCchhHHH-HhcCHHHHHHHHHHHHHHHHcC
Q 037639 82 TVQQKNPAVKALLSIGGGNASKESFAA-MASQAASRKSFIDSSINLARSL 130 (361)
Q Consensus 82 ~lk~~~~~~kvllsigg~~~~~~~~~~-~~~~~~~r~~f~~~l~~~l~~~ 130 (361)
+|.++.-.-|||+-|..... ..-+. -+.+..--++-.+.++..+.+.
T Consensus 508 rL~~R~e~rKiL~ViSDG~P--~D~~TlsvN~~~~l~~hLr~vi~~~e~~ 555 (600)
T TIGR01651 508 RLIARPEQRRILMMISDGAP--VDDSTLSVNPGNYLERHLRAVIEEIETR 555 (600)
T ss_pred HHhcCcccceEEEEEeCCCc--CCccccccCchhHHHHHHHHHHHHHhcc
Confidence 66666667888877766432 11222 2223345556677777777775
No 191
>PRK15108 biotin synthase; Provisional
Probab=23.49 E-value=4e+02 Score=25.03 Aligned_cols=41 Identities=5% Similarity=0.014 Sum_probs=29.0
Q ss_pred HHHHHHHcCCCcEEEeeecCCCc-----cchhhHHHHHHHHHHHHH
Q 037639 122 SSINLARSLNFHGLDIDWEYPDN-----AQMSDFGTLLTEWRSAVA 162 (361)
Q Consensus 122 ~l~~~l~~~~~DGidiD~e~~~~-----~~~~~~~~~l~~l~~~l~ 162 (361)
..++.|++.|+|++.++.|-... -....|...++.++.+..
T Consensus 137 e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~ 182 (345)
T PRK15108 137 SQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRD 182 (345)
T ss_pred HHHHHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHH
Confidence 45677889999999999986211 234567777777777643
No 192
>COG3365 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.41 E-value=1.4e+02 Score=22.77 Aligned_cols=42 Identities=24% Similarity=0.437 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCccchhhHHHHH
Q 037639 112 QAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLL 154 (361)
Q Consensus 112 ~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~~~~~~~~~~l 154 (361)
+|+.-.++++.-+..+.--+|-||||.- +|..++...+.+++
T Consensus 43 ~P~eeaklIe~TM~eId~e~F~GIei~s-~p~~~~~~l~~rLl 84 (118)
T COG3365 43 TPEEEAKLIEMTMSEIDPENFSGIEIYS-YPPKEDKGLLGRLL 84 (118)
T ss_pred ChHHHHHHHHHHHHhcCcccccceEEEE-eCCcccchhHHHhh
Confidence 4577778899999999999999999953 45455544444443
No 193
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=23.27 E-value=3.7e+02 Score=22.00 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhhCCCceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEe
Q 037639 74 AIFSSFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDI 137 (361)
Q Consensus 74 ~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidi 137 (361)
..+..+++.+++++|+.+|++.---... ..... ........+.+.+.+.+..+++++.=||+
T Consensus 93 ~~l~~li~~i~~~~~~~~iil~t~~p~~-~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~vD~ 154 (188)
T cd01827 93 KDYETMIDSFQALPSKPKIYICYPIPAY-YGDGG-FINDNIIKKEIQPMIDKIAKKLNLKLIDL 154 (188)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeCCccc-ccCCC-ccchHHHHHHHHHHHHHHHHHcCCcEEEc
Confidence 5678888889998898888764211100 01010 02233444566667777778887665554
No 194
>PLN02433 uroporphyrinogen decarboxylase
Probab=23.23 E-value=1.9e+02 Score=27.02 Aligned_cols=18 Identities=11% Similarity=0.350 Sum_probs=13.7
Q ss_pred HHHHHHcCCCcEEEeeec
Q 037639 123 SINLARSLNFHGLDIDWE 140 (361)
Q Consensus 123 l~~~l~~~~~DGidiD~e 140 (361)
++..+++.+.|++.+||.
T Consensus 245 ~~~~~~~~~~~~i~~d~~ 262 (345)
T PLN02433 245 LLERLAGTGVDVIGLDWT 262 (345)
T ss_pred HHHHHHhcCCCEEEcCCC
Confidence 456667778888888887
No 195
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=23.22 E-value=2.5e+02 Score=24.21 Aligned_cols=64 Identities=11% Similarity=0.095 Sum_probs=42.3
Q ss_pred HHHHHHHHHcCCCcEEEeeecCCCc--cchhhHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecccccccCCCChhhHhc
Q 037639 120 IDSSINLARSLNFHGLDIDWEYPDN--AQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISN 197 (361)
Q Consensus 120 ~~~l~~~l~~~~~DGidiD~e~~~~--~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~ 197 (361)
+..++..+.+.|.|+|.+- ++ -+.++..++++.+|+..+ +-+.+ .|. +...+..
T Consensus 13 ~~~ia~~v~~~gtDaI~VG----GS~gvt~~~~~~~v~~ik~~~~----------lPvil-fp~---------~~~~i~~ 68 (205)
T TIGR01769 13 IEKIAKNAKDAGTDAIMVG----GSLGIVESNLDQTVKKIKKITN----------LPVIL-FPG---------NVNGLSR 68 (205)
T ss_pred HHHHHHHHHhcCCCEEEEc----CcCCCCHHHHHHHHHHHHhhcC----------CCEEE-ECC---------CccccCc
Confidence 3447778888999999762 22 366788888888877432 22332 121 2345677
Q ss_pred cCCeEEeeee
Q 037639 198 SLDWTNVMAY 207 (361)
Q Consensus 198 ~vD~v~lm~y 207 (361)
.+|.+.+|+-
T Consensus 69 ~aD~~~~~sl 78 (205)
T TIGR01769 69 YADAVFFMSL 78 (205)
T ss_pred CCCEEEEEEe
Confidence 8999999986
No 196
>PRK09810 entericidin A; Provisional
Probab=23.21 E-value=60 Score=20.09 Aligned_cols=14 Identities=14% Similarity=0.308 Sum_probs=6.1
Q ss_pred CCCcchhHHHHHHH
Q 037639 1 MAPKILPVLLSFTL 14 (361)
Q Consensus 1 M~~~~~~~~l~~~~ 14 (361)
|.+|.++++++.++
T Consensus 1 mMkk~~~l~~~~~~ 14 (41)
T PRK09810 1 MMKRLIVLVLLAST 14 (41)
T ss_pred ChHHHHHHHHHHHH
Confidence 55454444433333
No 197
>PRK08187 pyruvate kinase; Validated
Probab=23.16 E-value=2.7e+02 Score=27.67 Aligned_cols=70 Identities=9% Similarity=0.017 Sum_probs=43.2
Q ss_pred CCceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCccchhhHHHHHHHHHHHHHHHHHh
Q 037639 88 PAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAEARS 167 (361)
Q Consensus 88 ~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~~~~~ 167 (361)
..+||+.+|||...+ ++ .++.-|-+.|.|.+-|++-+...+.+......+++..+.++.
T Consensus 133 r~tkIv~Tlg~pa~~---------~~--------e~i~~Li~aGmdvaRiN~SHg~~e~~~~~i~~vR~a~~~~g~---- 191 (493)
T PRK08187 133 RRTRIMVTLPSEAAD---------DP--------DFVLRLAERGMDCARINCAHDDPAAWQAMIGHLRQAERATGR---- 191 (493)
T ss_pred CCceEEEECCCCccC---------CH--------HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCC----
Confidence 369999999875431 11 234445567999999999876555555555555544444332
Q ss_pred cCCCceEEEEEeecc
Q 037639 168 SGKPALLLTAAVSYS 182 (361)
Q Consensus 168 ~~~~~~~ls~a~~~~ 182 (361)
+.-|.+.++.|
T Consensus 192 ----~i~Il~DL~GP 202 (493)
T PRK08187 192 ----RCKILMDLAGP 202 (493)
T ss_pred ----CeEEEEeCCCC
Confidence 15666666654
No 198
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=23.09 E-value=3.3e+02 Score=24.22 Aligned_cols=31 Identities=23% Similarity=0.208 Sum_probs=21.2
Q ss_pred HHHHHHcCCCcEEEeeecCCCccchhhHHHHH
Q 037639 123 SINLARSLNFHGLDIDWEYPDNAQMSDFGTLL 154 (361)
Q Consensus 123 l~~~l~~~~~DGidiD~e~~~~~~~~~~~~~l 154 (361)
+++.+...|||.|-||.|+... +......++
T Consensus 25 ~~e~~~~~g~D~v~iDlEH~~~-~~~~~~~~~ 55 (249)
T TIGR02311 25 AAEICAGAGFDWLLIDGEHAPN-DVRTILSQL 55 (249)
T ss_pred HHHHHHhcCCCEEEEeccCCCC-CHHHHHHHH
Confidence 4556777899999999998763 333333333
No 199
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=23.00 E-value=3.1e+02 Score=22.01 Aligned_cols=21 Identities=14% Similarity=0.396 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhhCCCceEEE
Q 037639 74 AIFSSFTRTVQQKNPAVKALL 94 (361)
Q Consensus 74 ~~~~~~~~~lk~~~~~~kvll 94 (361)
..+.++++.+++++|+++|++
T Consensus 72 ~~l~~li~~~~~~~~~~~vi~ 92 (169)
T cd01828 72 ANYRTILEKLRKHFPNIKIVV 92 (169)
T ss_pred HHHHHHHHHHHHHCCCCeEEE
Confidence 345555555666556666554
No 200
>PRK06756 flavodoxin; Provisional
Probab=22.97 E-value=3.9e+02 Score=21.19 Aligned_cols=96 Identities=10% Similarity=0.158 Sum_probs=50.3
Q ss_pred CCCCcEEEEEEEEeeCCCcEEEeCCcchHHHHHHHHHHHhhCCCceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHH
Q 037639 46 SILFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSIN 125 (361)
Q Consensus 46 ~~~~thii~~~~~v~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~ 125 (361)
...++.|+++.-... .+ ..+..+..|++.++.....-|...-+|-.+. . +. .-...+..+.+
T Consensus 47 ~~~~d~vi~gspt~~-~g-------~~p~~~~~fl~~l~~~~l~~k~~~~fgt~~~-~--y~-------~~~~a~~~l~~ 108 (148)
T PRK06756 47 LEQYDGIILGAYTWG-DG-------DLPDDFLDFYDAMDSIDLTGKKAAVFGSCDS-A--YP-------KYGVAVDILIE 108 (148)
T ss_pred HhcCCeEEEEeCCCC-CC-------CCcHHHHHHHHHHhcCCCCCCEEEEEeCCCC-c--hH-------HHHHHHHHHHH
Confidence 356777777762211 11 1123466676666543322233333433211 1 11 11234567777
Q ss_pred HHHcCC----CcEEEeeecCCCccchhhHHHHHHHHHHH
Q 037639 126 LARSLN----FHGLDIDWEYPDNAQMSDFGTLLTEWRSA 160 (361)
Q Consensus 126 ~l~~~~----~DGidiD~e~~~~~~~~~~~~~l~~l~~~ 160 (361)
.|++.| .+|+.+.+. |..++......|.+++.++
T Consensus 109 ~l~~~g~~~v~~~~~~~~~-p~~~d~~~~~~~~~~~~~~ 146 (148)
T PRK06756 109 KLQERGAAVVLEGLKVELT-PEDEDVEKCLQFGAEFVKH 146 (148)
T ss_pred HHHHCCCEEcCCCeEEecC-CCHHHHHHHHHHHHHHHHh
Confidence 888877 356677653 4457777777887777554
No 201
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=22.64 E-value=2.2e+02 Score=25.11 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHcCC---CcEEEeeecCCCc---cchhhHHHHHHHHHHHHHHHH
Q 037639 116 RKSFIDSSINLARSLN---FHGLDIDWEYPDN---AQMSDFGTLLTEWRSAVAAEA 165 (361)
Q Consensus 116 r~~f~~~l~~~l~~~~---~DGidiD~e~~~~---~~~~~~~~~l~~l~~~l~~~~ 165 (361)
-++.++.+++++++.. .||-.++.+.-.. .|...=..|++.+|+.|.++|
T Consensus 190 ~~~a~~qvl~m~~~g~v~a~dG~~v~v~adsiCvHGD~p~Al~~~~riR~~l~~~g 245 (252)
T COG1540 190 EEEALAQVLQMVREGKVTAIDGEWVAVEADSICVHGDNPHALAFARRIRAALEAEG 245 (252)
T ss_pred HHHHHHHHHHHHhcCceEeeCCcEEeeecceEEEcCCCHHHHHHHHHHHHHHHHcC
Confidence 4667788899998865 5888888885443 788888999999999999875
No 202
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=22.45 E-value=3.2e+02 Score=24.33 Aligned_cols=33 Identities=21% Similarity=0.153 Sum_probs=22.7
Q ss_pred HHHHHHcCCCcEEEeeecCCCccchhhHHHHHHH
Q 037639 123 SINLARSLNFHGLDIDWEYPDNAQMSDFGTLLTE 156 (361)
Q Consensus 123 l~~~l~~~~~DGidiD~e~~~~~~~~~~~~~l~~ 156 (361)
+++.+..-|||.|-||.|+... +...+..+++.
T Consensus 25 ~~e~~a~~G~D~v~iD~EHg~~-~~~~~~~~~~a 57 (249)
T TIGR03239 25 TTEVLGLAGFDWLLLDGEHAPN-DVLTFIPQLMA 57 (249)
T ss_pred HHHHHHhcCCCEEEEecccCCC-CHHHHHHHHHH
Confidence 5667778899999999998644 33344444443
No 203
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=22.28 E-value=2.6e+02 Score=27.58 Aligned_cols=68 Identities=7% Similarity=0.039 Sum_probs=43.0
Q ss_pred CceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCccchhhHHHHHHHHHHHHHHHHHhc
Q 037639 89 AVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAEARSS 168 (361)
Q Consensus 89 ~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~~~~~~ 168 (361)
.+|++.+||-...+ + +.+.-|-+.|.|.+-|++-+...++.....+.++++.+.++.
T Consensus 2 ~tkii~Tigp~~~~----------~--------e~l~~l~~~G~~~~R~N~shg~~~~~~~~i~~ir~~~~~~~~----- 58 (473)
T TIGR01064 2 RTKIVCTIGPATNS----------P--------EMLKKLLDAGMNVARLNFSHGSHEEHGKRIENVREAAEKLGR----- 58 (473)
T ss_pred CceEEEeeCCCCCC----------H--------HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCC-----
Confidence 48999999965432 1 123334457999999999876666666666666655544432
Q ss_pred CCCceEEEEEeecc
Q 037639 169 GKPALLLTAAVSYS 182 (361)
Q Consensus 169 ~~~~~~ls~a~~~~ 182 (361)
..-+-+.++.+
T Consensus 59 ---~~~i~~Dl~Gp 69 (473)
T TIGR01064 59 ---PVAILLDTKGP 69 (473)
T ss_pred ---CeEEEEeCCCC
Confidence 15566666654
No 204
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=22.24 E-value=3.5e+02 Score=22.19 Aligned_cols=64 Identities=13% Similarity=0.232 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHhhCCCceEEEEEcCCCCCchhHHH--------HhcCHHHHHHHHHHHHHHHHcCCCcEEEe
Q 037639 73 QAIFSSFTRTVQQKNPAVKALLSIGGGNASKESFAA--------MASQAASRKSFIDSSINLARSLNFHGLDI 137 (361)
Q Consensus 73 ~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~--------~~~~~~~r~~f~~~l~~~l~~~~~DGidi 137 (361)
...+..+++.+++++|+.+|++.---... ...+.. .....+..+.+.+.+.+..+++++.=||+
T Consensus 91 ~~~~~~~i~~~~~~~~~~~ii~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~iD~ 162 (199)
T cd01838 91 KENLRKIVSHLKSLSPKTKVILITPPPVD-EEAWEKSLEDGGSQPGRTNELLKQYAEACVEVAEELGVPVIDL 162 (199)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEeCCCCCC-HHHHhhhhccccCCccccHHHHHHHHHHHHHHHHHhCCcEEEH
Confidence 35577888888888889998866221111 111111 11223445667777777888887665554
No 205
>cd08578 GDPD_NUC-2_fungi Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins. This subfamily corresponds to a putative glycerophosphodiester phosphodiesterase domain (GDPD) present in Neurospora crassa ankyrin repeat protein NUC-2 and its Saccharomyces cerevisiae counterpart, Phosphate system positive regulatory protein PHO81. Some uncharecaterized NUC-2 sequence homologs are also included in this family. NUC-2 plays an important role in the phosphate-regulated signal transduction pathway in Neurospora crassa. It shows high similarity to a cyclin-dependent kinase inhibitory protein PHO81, which is part of the phosphate regulatory cascade in S. cerevisiae. Both NUC-2 and PHO81 have multi-domain architecture, including an SPX N-terminal domain following by several ankyrin repeats and a putative C-terminal GDPD domain with unknown function. Although the putative GDPD domain displays sequence homology to that of bacterial glycerophos
Probab=22.18 E-value=1.8e+02 Score=26.86 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHHHHHcCCCcEEEeeec
Q 037639 112 QAASRKSFIDSSINLARSLNFHGLDIDWE 140 (361)
Q Consensus 112 ~~~~r~~f~~~l~~~l~~~~~DGidiD~e 140 (361)
..+.|..-+++.+++.+.+++-||.++.+
T Consensus 223 ~~d~r~~Si~~Av~fA~~~nL~Giv~~~~ 251 (300)
T cd08578 223 EADPRSRSIKEAVRFAKNNNLLGLILPYS 251 (300)
T ss_pred ccCchhhhHHHHHHHHHHcCCcEEEecHH
Confidence 34678899999999999999999999886
No 206
>PLN02428 lipoic acid synthase
Probab=22.09 E-value=6.7e+02 Score=23.66 Aligned_cols=70 Identities=10% Similarity=0.078 Sum_probs=46.8
Q ss_pred CCcEEEEEEEEeeCCCcEEEeCCcchHHHHHHHHHHHhhCCCceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHH
Q 037639 48 LFTHLFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLA 127 (361)
Q Consensus 48 ~~thii~~~~~v~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l 127 (361)
.++||++.....+ ..++.....+.++++.+|+.+|.+++-..+.+... + ..+++.|
T Consensus 146 Glk~vvltSg~rd------dl~D~ga~~~~elir~Ir~~~P~i~Ie~L~pdf~~----------d--------~elL~~L 201 (349)
T PLN02428 146 GVDYVVLTSVDRD------DLPDGGSGHFAETVRRLKQLKPEILVEALVPDFRG----------D--------LGAVETV 201 (349)
T ss_pred CCCEEEEEEcCCC------CCCcccHHHHHHHHHHHHHhCCCcEEEEeCccccC----------C--------HHHHHHH
Confidence 4677765543222 11334556788888899999898877765443211 1 4578888
Q ss_pred HcCCCcEEEeeecC
Q 037639 128 RSLNFHGLDIDWEY 141 (361)
Q Consensus 128 ~~~~~DGidiD~e~ 141 (361)
++-|+|.+....|-
T Consensus 202 ~eAG~d~i~hnlET 215 (349)
T PLN02428 202 ATSGLDVFAHNIET 215 (349)
T ss_pred HHcCCCEEccCccC
Confidence 88999999988884
No 207
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=21.89 E-value=3.4e+02 Score=24.93 Aligned_cols=48 Identities=6% Similarity=0.203 Sum_probs=31.9
Q ss_pred HHHHHcCCCcEEEeeecCCCc----------------------cchhhHHHHHHHHHHHHHHHHHhcCCCceEEEEE
Q 037639 124 INLARSLNFHGLDIDWEYPDN----------------------AQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAA 178 (361)
Q Consensus 124 ~~~l~~~~~DGidiD~e~~~~----------------------~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ls~a 178 (361)
++-+..-|+|=|-|||..-.. ..++.+++.++++-+.|++. ++++.+.
T Consensus 265 Le~l~~tG~DVvgLDWTvdp~ear~~~g~~VtlQGNlDP~~ly~s~e~it~~v~~mv~~fG~~-------ryI~NLG 334 (359)
T KOG2872|consen 265 LEELAQTGYDVVGLDWTVDPAEARRRVGNRVTLQGNLDPGVLYGSKEEITQLVKQMVKDFGKS-------RYIANLG 334 (359)
T ss_pred HHHHHhcCCcEEeecccccHHHHHHhhCCceEEecCCChHHhcCCHHHHHHHHHHHHHHhCcc-------ceEEecC
Confidence 556777899999999964211 35566677777776666643 2666654
No 208
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=21.56 E-value=1.5e+02 Score=27.91 Aligned_cols=57 Identities=16% Similarity=0.381 Sum_probs=35.8
Q ss_pred CceEEEEEcCCCCCchhHHHHhcCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc------------cchhhHHHHHHH
Q 037639 89 AVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN------------AQMSDFGTLLTE 156 (361)
Q Consensus 89 ~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~------------~~~~~~~~~l~~ 156 (361)
+-.+++-+||.+ .+.+. ..++++..|. |||||++-=|.. .+.+...++++.
T Consensus 73 D~PLIvQf~~nd--p~~ll--------------~Aa~lv~~y~-D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~ 135 (358)
T KOG2335|consen 73 DRPLIVQFGGND--PENLL--------------KAARLVQPYC-DGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSA 135 (358)
T ss_pred CCceEEEEcCCC--HHHHH--------------HHHHHhhhhc-CcccccCCCCHHHHhcCCccceeccCHHHHHHHHHH
Confidence 455777888753 22222 2456778888 999999987743 455555566666
Q ss_pred HHHHHH
Q 037639 157 WRSAVA 162 (361)
Q Consensus 157 l~~~l~ 162 (361)
++..++
T Consensus 136 v~~~l~ 141 (358)
T KOG2335|consen 136 VRANLN 141 (358)
T ss_pred HHhhcC
Confidence 655554
No 209
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.41 E-value=3.6e+02 Score=21.26 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHhhCCCceEEEE
Q 037639 73 QAIFSSFTRTVQQKNPAVKALLS 95 (361)
Q Consensus 73 ~~~~~~~~~~lk~~~~~~kvlls 95 (361)
...+.++++.+++++|++++++.
T Consensus 63 ~~~~~~~i~~i~~~~p~~~ii~~ 85 (157)
T cd01833 63 PDRLRALIDQMRAANPDVKIIVA 85 (157)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEE
Confidence 45678888889999999998865
No 210
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=21.41 E-value=3.3e+02 Score=24.56 Aligned_cols=34 Identities=24% Similarity=0.196 Sum_probs=23.2
Q ss_pred HHHHHHcCCCcEEEeeecCCCccchhhHHHHHHHH
Q 037639 123 SINLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEW 157 (361)
Q Consensus 123 l~~~l~~~~~DGidiD~e~~~~~~~~~~~~~l~~l 157 (361)
++..+..-|||.|-||.|+... +.+.+..+++.+
T Consensus 31 ~~E~~a~~GfD~v~iD~EHg~~-~~~~l~~~i~a~ 64 (267)
T PRK10128 31 MAEIAATSGYDWLLIDGEHAPN-TIQDLYHQLQAI 64 (267)
T ss_pred HHHHHHHcCCCEEEEccccCCC-CHHHHHHHHHHH
Confidence 4666778899999999998643 344444455444
No 211
>PF06576 DUF1133: Protein of unknown function (DUF1133); InterPro: IPR010557 This family consists of a number of hypothetical proteins from Escherichia coli O157:H7 and Salmonella typhi. The function of this family is unknown.
Probab=21.32 E-value=1e+02 Score=25.69 Aligned_cols=32 Identities=9% Similarity=0.168 Sum_probs=28.9
Q ss_pred chhHHHHhcCHHHHHHHHHHHHHHHHcCCCcE
Q 037639 103 KESFAAMASQAASRKSFIDSSINLARSLNFHG 134 (361)
Q Consensus 103 ~~~~~~~~~~~~~r~~f~~~l~~~l~~~~~DG 134 (361)
...|.+++.+++..++-++++++-|++-|+++
T Consensus 43 g~mfnqLl~s~kitKtaI~~aLr~mkKsGi~k 74 (176)
T PF06576_consen 43 GNMFNQLLASKKITKTAINEALRRMKKSGISK 74 (176)
T ss_pred hhHHHHHHhcccccHHHHHHHHHHHHHhcCCc
Confidence 56799999999999999999999999988875
No 212
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=21.26 E-value=2e+02 Score=26.83 Aligned_cols=18 Identities=11% Similarity=0.311 Sum_probs=13.2
Q ss_pred HHHHHHcCCCcEEEeeec
Q 037639 123 SINLARSLNFHGLDIDWE 140 (361)
Q Consensus 123 l~~~l~~~~~DGidiD~e 140 (361)
++..+.+.+.|++.+||.
T Consensus 252 ~~~~~~~~~~~~is~d~~ 269 (346)
T PRK00115 252 LLEAMAETGADVVGLDWT 269 (346)
T ss_pred HHHHHHhcCCCEEeeCCC
Confidence 355567778888888886
No 213
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=21.17 E-value=3.5e+02 Score=26.75 Aligned_cols=77 Identities=4% Similarity=0.031 Sum_probs=41.4
Q ss_pred EEEEEEEeeCCCcEEEeCCcchHHHHHHHHHHHhhCCCceEEEEEcCCCCCchhHHHH---hcCHHHHHHHHHHHHHHHH
Q 037639 52 LFCAFADLDSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLSIGGGNASKESFAAM---ASQAASRKSFIDSSINLAR 128 (361)
Q Consensus 52 ii~~~~~v~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~---~~~~~~r~~f~~~l~~~l~ 128 (361)
..++|..|-|+|..-.+....-.-+.+++..|+++ |++++++|--|+. +..+... ..+++..+.|++=.-..++
T Consensus 88 fSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~--GI~P~vTL~H~dl-P~~L~~~yGGW~n~~~~~~F~~Ya~~~f~ 164 (477)
T PRK15014 88 TSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKY--NIEPVITLSHFEM-PLHLVQQYGSWTNRKVVDFFVRFAEVVFE 164 (477)
T ss_pred ecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEeeCCCC-CHHHHHhcCCCCChHHHHHHHHHHHHHHH
Confidence 34455566665421112222334578888889988 9999999955433 2222221 2244555555555444444
Q ss_pred cCC
Q 037639 129 SLN 131 (361)
Q Consensus 129 ~~~ 131 (361)
++|
T Consensus 165 ~fg 167 (477)
T PRK15014 165 RYK 167 (477)
T ss_pred Hhc
Confidence 443
No 214
>PRK14057 epimerase; Provisional
Probab=21.17 E-value=5.6e+02 Score=22.98 Aligned_cols=73 Identities=8% Similarity=-0.007 Sum_probs=43.2
Q ss_pred HHHHcCCCcEEEeeecCCCccchhhHHHHHHHHHHHHHHHHHh-c-CCCceEEEEEeecccccccCCCChhhHhccCCeE
Q 037639 125 NLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAEARS-S-GKPALLLTAAVSYSANYFGAINPTSAISNSLDWT 202 (361)
Q Consensus 125 ~~l~~~~~DGidiD~e~~~~~~~~~~~~~l~~l~~~l~~~~~~-~-~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v 202 (361)
+.+.+.|.|=|-+..|-. ..+.+.++.+|+. |.. . ++.+....+++.+..... .+..+.+.+|+|
T Consensus 92 ~~~~~aGad~It~H~Ea~-----~~~~~~l~~Ir~~----G~k~~~~~~~~kaGlAlnP~Tp~e----~i~~~l~~vD~V 158 (254)
T PRK14057 92 QACVKAGAHCITLQAEGD-----IHLHHTLSWLGQQ----TVPVIGGEMPVIRGISLCPATPLD----VIIPILSDVEVI 158 (254)
T ss_pred HHHHHhCCCEEEEeeccc-----cCHHHHHHHHHHc----CCCcccccccceeEEEECCCCCHH----HHHHHHHhCCEE
Confidence 344456899999999842 3355666666653 100 0 011134566655433221 356667889999
Q ss_pred EeeeeccC
Q 037639 203 NVMAYDFF 210 (361)
Q Consensus 203 ~lm~yd~~ 210 (361)
.+|+-+..
T Consensus 159 LvMtV~PG 166 (254)
T PRK14057 159 QLLAVNPG 166 (254)
T ss_pred EEEEECCC
Confidence 99998765
No 215
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=21.11 E-value=71 Score=19.99 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=7.1
Q ss_pred CCCcchhHHHHHHHHHh
Q 037639 1 MAPKILPVLLSFTLLLL 17 (361)
Q Consensus 1 M~~~~~~~~l~~~~l~~ 17 (361)
|++...+.++++.+++.
T Consensus 1 MkKi~~~~i~~~~~~L~ 17 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLA 17 (46)
T ss_pred CcEEEEeHHHHHHHHHH
Confidence 76333333333333444
No 216
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=21.05 E-value=4.5e+02 Score=23.62 Aligned_cols=38 Identities=5% Similarity=0.030 Sum_probs=26.2
Q ss_pred HHHHHHHcCCCcEEEee--ecCCC----ccchhhHHHHHHHHHHHH
Q 037639 122 SSINLARSLNFHGLDID--WEYPD----NAQMSDFGTLLTEWRSAV 161 (361)
Q Consensus 122 ~l~~~l~~~~~DGidiD--~e~~~----~~~~~~~~~~l~~l~~~l 161 (361)
|+.++++. .||+++. +|.++ .-|.+...+|++.+|..+
T Consensus 213 Nv~e~l~~--adGviVgS~~K~~G~~~n~~D~~rV~~Fm~~v~~~~ 256 (257)
T TIGR00259 213 NVEELLSI--ADGVIVATTIKKDGVFNNFVDQARVSQFVEKVAHGL 256 (257)
T ss_pred HHHHHHhh--CCEEEECCCcccCCccCCCcCHHHHHHHHHHHHHhc
Confidence 44444443 8999996 56566 367788888888887643
No 217
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=20.99 E-value=5.7e+02 Score=22.38 Aligned_cols=89 Identities=15% Similarity=0.147 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhhCCCceEEEEEcC---CCCCchhHHHHhcCHHHHHHHHHHHHHHHHcC-CCcEEEeeecCCCc-----
Q 037639 74 AIFSSFTRTVQQKNPAVKALLSIGG---GNASKESFAAMASQAASRKSFIDSSINLARSL-NFHGLDIDWEYPDN----- 144 (361)
Q Consensus 74 ~~~~~~~~~lk~~~~~~kvllsigg---~~~~~~~~~~~~~~~~~r~~f~~~l~~~l~~~-~~DGidiD~e~~~~----- 144 (361)
..+.++++.++++ |++|+|.+-. |......+.......+.-.++...+++..+.+ ..-|++|==| |..
T Consensus 62 ~~ld~~v~~a~~~--gi~vild~h~~~~w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NE-P~~~~~~~ 138 (281)
T PF00150_consen 62 ARLDRIVDAAQAY--GIYVILDLHNAPGWANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNE-PNGGNDDA 138 (281)
T ss_dssp HHHHHHHHHHHHT--T-EEEEEEEESTTCSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSS-GCSTTSTT
T ss_pred HHHHHHHHHHHhC--CCeEEEEeccCccccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCC-ccccCCcc
Confidence 4566777777777 9999998866 31111111111111122233445555555332 3456665222 322
Q ss_pred ----cchhhHHHHHHHHHHHHHHHH
Q 037639 145 ----AQMSDFGTLLTEWRSAVAAEA 165 (361)
Q Consensus 145 ----~~~~~~~~~l~~l~~~l~~~~ 165 (361)
.....+..+.+++..++++.+
T Consensus 139 ~w~~~~~~~~~~~~~~~~~~Ir~~~ 163 (281)
T PF00150_consen 139 NWNAQNPADWQDWYQRAIDAIRAAD 163 (281)
T ss_dssp TTSHHHTHHHHHHHHHHHHHHHHTT
T ss_pred ccccccchhhhhHHHHHHHHHHhcC
Confidence 123667888888888887763
No 218
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=20.80 E-value=1.1e+02 Score=20.55 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=8.8
Q ss_pred CCCcchhHHHHHHHHHh
Q 037639 1 MAPKILPVLLSFTLLLL 17 (361)
Q Consensus 1 M~~~~~~~~l~~~~l~~ 17 (361)
|++|.+++.|+-+.|..
T Consensus 1 MA~Kl~vialLC~aLva 17 (65)
T PF10731_consen 1 MASKLIVIALLCVALVA 17 (65)
T ss_pred CcchhhHHHHHHHHHHH
Confidence 77776554444333444
No 219
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=20.75 E-value=33 Score=18.74 Aligned_cols=13 Identities=15% Similarity=0.056 Sum_probs=5.4
Q ss_pred chhHHHHHHHHHh
Q 037639 5 ILPVLLSFTLLLL 17 (361)
Q Consensus 5 ~~~~~l~~~~l~~ 17 (361)
++++++++++.++
T Consensus 9 kil~~l~a~~~La 21 (25)
T PF08139_consen 9 KILFPLLALFMLA 21 (25)
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444333
No 220
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=20.46 E-value=2.2e+02 Score=25.28 Aligned_cols=44 Identities=7% Similarity=0.037 Sum_probs=30.3
Q ss_pred HHHHHHHcCCCcEEEeeecCCCcc-chhhHHHHHHHHHHHHHHHH
Q 037639 122 SSINLARSLNFHGLDIDWEYPDNA-QMSDFGTLLTEWRSAVAAEA 165 (361)
Q Consensus 122 ~l~~~l~~~~~DGidiD~e~~~~~-~~~~~~~~l~~l~~~l~~~~ 165 (361)
..+..+.+.||++|+|....|... ....-...++++++.+.+.+
T Consensus 14 ~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 58 (273)
T smart00518 14 KAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENN 58 (273)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 357778889999999998877442 22223345777888777653
No 221
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=20.44 E-value=3.6e+02 Score=21.74 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=19.6
Q ss_pred HHHcCCCcEEEe-----eecCCCc--cchhhHHHHHHHHHHHH
Q 037639 126 LARSLNFHGLDI-----DWEYPDN--AQMSDFGTLLTEWRSAV 161 (361)
Q Consensus 126 ~l~~~~~DGidi-----D~e~~~~--~~~~~~~~~l~~l~~~l 161 (361)
.+....-|-|-| |...... .-.+++..+++.+++..
T Consensus 45 ~~~~~~p~~vvi~~G~ND~~~~~~~~~~~~~~~~lv~~i~~~~ 87 (171)
T cd04502 45 LVLPYQPRRVVLYAGDNDLASGRTPEEVLRDFRELVNRIRAKL 87 (171)
T ss_pred hhccCCCCEEEEEEecCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 344556777777 4432212 34466666666666554
No 222
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=20.41 E-value=4.8e+02 Score=23.15 Aligned_cols=76 Identities=14% Similarity=0.264 Sum_probs=42.0
Q ss_pred HHHHHHHHhhCCCceEEEEEcCCCCCchhHHHHhc---CHHHHHHHHHHHH----HHHHcCCCcEEEeeecCCCc-cchh
Q 037639 77 SSFTRTVQQKNPAVKALLSIGGGNASKESFAAMAS---QAASRKSFIDSSI----NLARSLNFHGLDIDWEYPDN-AQMS 148 (361)
Q Consensus 77 ~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~---~~~~r~~f~~~l~----~~l~~~~~DGidiD~e~~~~-~~~~ 148 (361)
.+.++.+|++ .|+++|+|-=.. ...|..+.. .+..|..+.+.-. ..++.- -|=|+.|+.-|+- .+.+
T Consensus 67 lE~v~ElRek---akivVA~GsCA~-~Ggv~~~~~~s~~e~l~~~y~~~~~~~~~~~v~Pl-~evI~VD~~IpGCPP~~e 141 (247)
T COG1941 67 LELVKELREK---AKIVVALGSCAV-TGGVQGLRNKSGEELLRPVYGDAKSTFNEESVVPL-GEVIDVDYAIPGCPPSPE 141 (247)
T ss_pred HHHHHHHHHh---CcEEEEEecchh-cCCchhhhhccccccchhhhhcccCCCCccceEEc-hheeeeeeecCCCCcCHH
Confidence 3455567776 899999987443 445555443 1122222211110 111111 2678999988875 6666
Q ss_pred hHHHHHHHH
Q 037639 149 DFGTLLTEW 157 (361)
Q Consensus 149 ~~~~~l~~l 157 (361)
.+..++..|
T Consensus 142 ~I~~al~al 150 (247)
T COG1941 142 EIARALTAL 150 (247)
T ss_pred HHHHHHHHH
Confidence 676666666
No 223
>PLN02684 Probable galactinol--sucrose galactosyltransferase
Probab=20.27 E-value=2.4e+02 Score=29.45 Aligned_cols=54 Identities=13% Similarity=0.148 Sum_probs=39.2
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCcEEEeeecCCCc---cchhhHHHHHHHHHHHHHHH
Q 037639 111 SQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN---AQMSDFGTLLTEWRSAVAAE 164 (361)
Q Consensus 111 ~~~~~r~~f~~~l~~~l~~~~~DGidiD~e~~~~---~~~~~~~~~l~~l~~~l~~~ 164 (361)
-+++...+|-+.+-++|++.|+|||-+|-+..-. .+...-.+|.+...+++.+.
T Consensus 358 v~P~~~~~FYd~~hsyL~s~GVDgVKVD~Q~~le~l~~~~ggrv~l~~ay~~ALe~S 414 (750)
T PLN02684 358 VNPKKVYKFYNELHSYLADAGIDGVKVDVQCILETLGAGLGGRVELTRQYHQALDAS 414 (750)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCeEEEChhhhHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999765322 23344456666666666543
Done!