BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037640
(398 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 172 bits (435), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 120/374 (32%), Positives = 193/374 (51%), Gaps = 37/374 (9%)
Query: 33 PNCIISDVCLPYTAQIAGKFNVPRIAFHGTCCFSVVCFNNIFASKFLESISSESEYFSVP 92
P ++ D+ +A +F+VP F+ T + F ++ K E++S E + P
Sbjct: 111 PTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHL--PKLDETVSCEFRELTEP 168
Query: 93 -GLPDKIELTKKQ-VDSTQGQKFKAFEYKIGAATL--AIDGVIINSFEELEPAYVKEYKK 148
LP + + K +D Q +K A+++ + +G+++N+F ELEP +K ++
Sbjct: 169 LMLPGCVPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQE 228
Query: 149 ISRDK--AWCIGPVSLSNKEYSDKAQRGNTSSLDEHKCLKWLDSKDPKSVVYACLGSMCN 206
DK + +GP+ K+ + + + E +CLKWLD++ SV+Y GS
Sbjct: 229 PGLDKPPVYPVGPLVNIGKQEAKQTE--------ESECLKWLDNQPLGSVLYVSFGSGGT 280
Query: 207 LIPSQMMELGLGLEASNRPFIWVIRE----------GETSKELKKWVVEDGFEERIKGRG 256
L Q+ EL LGL S + F+WVIR S+ + GF ER K RG
Sbjct: 281 LTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRG 340
Query: 257 LVIWDWAPQVLILSHPSVGGFLTHCGWNSTLEGVCAGLPLLTWPLFADQFTNEKLAVHLL 316
VI WAPQ +L+HPS GGFLTHCGWNSTLE V +G+PL+ WPL+A+Q N L +
Sbjct: 341 FVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDI 400
Query: 317 KIGVKIGVENPMTWGEEQNIGVLVKRDDVKNAVERLMDEGNDGEERRNRALNLAKMAKMA 376
+ ++ G++ LV+R++V V+ LM EG +G+ RN+ L + A
Sbjct: 401 RAALRPRA------GDDG----LVRREEVARVVKGLM-EGEEGKGVRNKMKELKEAACRV 449
Query: 377 IQEGGSSHLNITLL 390
+++ G+S ++L+
Sbjct: 450 LKDDGTSTKALSLV 463
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 109/381 (28%), Positives = 189/381 (49%), Gaps = 35/381 (9%)
Query: 31 PQPNCIISDVCLPYTAQIAGKFNVPRI-AFHGTCC--FSVVCFNNIFA--------SKFL 79
P C++SD C+ +T Q A +F +P + F + C +V+ F + +L
Sbjct: 117 PPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYL 176
Query: 80 ESISSESEYFSVPGLPD-KIELTKKQVDSTQGQKFK-AFEYKIGAATLAIDGVIINSFEE 137
+ E++ +PGL + +++ + +T F ++ +++N+F E
Sbjct: 177 TNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNE 236
Query: 138 LEPAYVKEYKKISRDKAWCIGPVSLSNKEYSDKAQRGNTSS---LDEHKCLKWLDSKDPK 194
LE + + + IGP+ K+ Q + S ++ +CL WL+SK+P
Sbjct: 237 LESDVINALSS-TIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPG 295
Query: 195 SVVYACLGSMCNLIPSQMMELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERIKG 254
SVVY GS + P Q++E GL + F+W+IR + F I
Sbjct: 296 SVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIG--GSVIFSSEFTNEIAD 353
Query: 255 RGLVIWDWAPQVLILSHPSVGGFLTHCGWNSTLEGVCAGLPLLTWPLFADQFTNEKLAVH 314
RGL I W PQ +L+HPS+GGFLTHCGWNST E +CAG+P+L WP FADQ T+ + +
Sbjct: 354 RGL-IASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICN 412
Query: 315 LLKIGVKIGVENPMTWGEEQNIGVLVKRDDVKNAVERLMDEGNDGEERRNRALNLAKMAK 374
+IG++I VKR+++ + ++ G+ G++ + +A+ L K A+
Sbjct: 413 EWEIGMEIDTN--------------VKREELAKLINEVI-AGDKGKKMKQKAMELKKKAE 457
Query: 375 MAIQEGGSSHLNITLLLQDIM 395
+ GG S++N+ +++D++
Sbjct: 458 ENTRPGGCSYMNLNKVIKDVL 478
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 110/308 (35%), Positives = 153/308 (49%), Gaps = 42/308 (13%)
Query: 91 VPGLP-----DKIELTKKQVDSTQGQKFKAFEYKIGAATLAIDGVIINSFEELEPAYVKE 145
+PG P D E K +D F +K+G + V INSF + P E
Sbjct: 179 LPGFPELKASDLPEGVIKDIDV----PFATMLHKMGLELPRANAVAINSFATIHPLIENE 234
Query: 146 YKKISRDKAWC-IGPVSLSNKEYSDKAQRGNTSSLDEHKCLKWLDSKDPKSVVYACLGSM 204
S+ K +GP +L+ QR + DEH CL+WLD + SVVY GS+
Sbjct: 235 LN--SKFKLLLNVGPFNLTT------PQRKVS---DEHGCLEWLDQHENSSVVYISFGSV 283
Query: 205 CNLIPSQMMELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWDWAP 264
P ++ L LE PFIW R G+ ++L K GF ER K +G ++ WAP
Sbjct: 284 VTPPPHELTALAESLEECGFPFIWSFR-GDPKEKLPK-----GFLERTKTKGKIV-AWAP 336
Query: 265 QVLILSHPSVGGFLTHCGWNSTLEGVCAGLPLLTWPLFADQFTNEKLAVHLLKIGVKIGV 324
QV IL H SVG FLTH GWNS LE + G+P+++ P F DQ N L +L+IGV GV
Sbjct: 337 QVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGV--GV 394
Query: 325 ENPMTWGEEQNIGVLVKRDDVKNAVERLMDEGNDGEERRNRALNLAKMAKMAIQEGGSSH 384
+N GVL K + +K A+E M G R + + L + A A+++ G+S
Sbjct: 395 DN----------GVLTK-ESIKKALELTMS-SEKGGIMRQKIVKLKESAFKAVEQNGTSA 442
Query: 385 LNITLLLQ 392
++ T L+Q
Sbjct: 443 MDFTTLIQ 450
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 105/374 (28%), Positives = 177/374 (47%), Gaps = 46/374 (12%)
Query: 34 NCIISDVCLPYTAQIAGKFNVPRIAFHGTCCFSVVCFNNIFASKFLESIS------SESE 87
+C+++D + + A +A + V + F S+ +++ + E I E E
Sbjct: 114 SCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLS--THVYIDEIREKIGVSGIQGREDE 171
Query: 88 YFS-VPGLPDKIELTKKQ---VDSTQGQKFKAFEYKIGAATLAIDGVIINSFEELEPAYV 143
+ +PG+ K+ Q V F +++G V INSFEEL+ +
Sbjct: 172 LLNFIPGM-SKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLT 230
Query: 144 KEYKKISRDKAWC-IGPVSLSNKEYSDKAQRGNTSSLDEHKCLKWLDSKDPKSVVYACLG 202
+ K S+ K + IGP +L + NT+ CL+WL + P SVVY G
Sbjct: 231 NDLK--SKLKTYLNIGPFNL----ITPPPVVPNTTG-----CLQWLKERKPTSVVYISFG 279
Query: 203 SMCNLIPSQMMELGLGLEASNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWDW 262
++ P++++ L LEAS PFIW +R+ + + +GF E+ +G G+V+ W
Sbjct: 280 TVTTPPPAEVVALSEALEASRVPFIWSLRDK------ARVHLPEGFLEKTRGYGMVV-PW 332
Query: 263 APQVLILSHPSVGGFLTHCGWNSTLEGVCAGLPLLTWPLFADQFTNEKLAVHLLKIGVKI 322
APQ +L+H +VG F+THCGWNS E V G+PL+ P F DQ N ++ +L+IGV+I
Sbjct: 333 APQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRI 392
Query: 323 GVENPMTWGEEQNIGVLVKRDDVKNAVERLMDEGNDGEERRNRALNLAKMAKMAIQEGGS 382
G + + + + ++++ + G++ R L + A A+ GS
Sbjct: 393 E-------------GGVFTKSGLMSCFDQILSQ-EKGKKLRENLRALRETADRAVGPKGS 438
Query: 383 SHLNITLLLQDIMK 396
S N L+ + K
Sbjct: 439 STENFITLVDLVSK 452
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 135 bits (340), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 152/282 (53%), Gaps = 28/282 (9%)
Query: 118 YKIGAATLAIDGVIINSFEELEPAYVKEYKKISRDKAWCIGPVSLSNKEYSDKAQRGNTS 177
YK+ G+I+N+F +LE + + D I P+ K Q
Sbjct: 203 YKLAERFRDTKGIIVNTFSDLEQSSIDAL----YDHDEKIPPIYAVGPLLDLKGQPNPKL 258
Query: 178 SLDEHK-CLKWLDSKDPKSVVYACLGSM-CNLIPSQMMELGLGLEASNRPFIWVIREGET 235
+H LKWLD + KSVV+ C GSM + PSQ+ E+ LGL+ S F+W
Sbjct: 259 DQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW------- 311
Query: 236 SKELKKWVVEDGFEE--RIKGRGLVIWDWAPQVLILSHPSVGGFLTHCGWNSTLEGVCAG 293
S +K V +GF E ++G+G+ I WAPQV +L+H ++GGF++HCGWNS LE + G
Sbjct: 312 SNSAEKKVFPEGFLEWMELEGKGM-ICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFG 370
Query: 294 LPLLTWPLFADQFTNEKLAVHLLK-IGVKIGVENPMTWGEEQNIGVLVKRDDVKNAVERL 352
+P+LTWP++A+Q N A L+K GV +G+ G + +V ++++ ++ L
Sbjct: 371 VPILTWPIYAEQQLN---AFRLVKEWGVGLGLRVDYRKGSD-----VVAAEEIEKGLKDL 422
Query: 353 MDEGNDGEERRNRALNLAKMAKMAIQEGGSSHLNITLLLQDI 394
MD+ + ++ + +M++ A+ +GGSS +++ L+ DI
Sbjct: 423 MDKDSIVHKKVQE---MKEMSRNAVVDGGSSLISVGKLIDDI 461
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 135 bits (340), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 152/282 (53%), Gaps = 28/282 (9%)
Query: 118 YKIGAATLAIDGVIINSFEELEPAYVKEYKKISRDKAWCIGPVSLSNKEYSDKAQRGNTS 177
YK+ G+I+N+F +LE + + D I P+ K Q
Sbjct: 203 YKLAERFRDTKGIIVNTFSDLEQSSIDAL----YDHDEKIPPIYAVGPLLDLKGQPNPKL 258
Query: 178 SLDEHK-CLKWLDSKDPKSVVYACLGSM-CNLIPSQMMELGLGLEASNRPFIWVIREGET 235
+H LKWLD + KSVV+ C GSM + PSQ+ E+ LGL+ S F+W
Sbjct: 259 DQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW------- 311
Query: 236 SKELKKWVVEDGFEE--RIKGRGLVIWDWAPQVLILSHPSVGGFLTHCGWNSTLEGVCAG 293
S +K V +GF E ++G+G+ I WAPQV +L+H ++GGF++HCGWNS LE + G
Sbjct: 312 SNSAEKKVFPEGFLEWMELEGKGM-ICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFG 370
Query: 294 LPLLTWPLFADQFTNEKLAVHLLK-IGVKIGVENPMTWGEEQNIGVLVKRDDVKNAVERL 352
+P+LTWP++A+Q N A L+K GV +G+ G + +V ++++ ++ L
Sbjct: 371 VPILTWPIYAEQQLN---AFRLVKEWGVGLGLRVDYRKGSD-----VVAAEEIEKGLKDL 422
Query: 353 MDEGNDGEERRNRALNLAKMAKMAIQEGGSSHLNITLLLQDI 394
MD+ + ++ + +M++ A+ +GGSS +++ L+ DI
Sbjct: 423 MDKDSIVHKKVQE---MKEMSRNAVVDGGSSLISVGKLIDDI 461
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%)
Query: 246 DGFEERIKGRGLVIWDWAPQVLILSHPSVGGFLTHCGWNSTLEGVCAGLPLLTWPLFADQ 305
DG + G ++ W PQ +L HP F+TH G N E + G+P + PLFADQ
Sbjct: 59 DGNKPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQ 118
Query: 306 FTN 308
N
Sbjct: 119 PDN 121
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 5/131 (3%)
Query: 259 IWDWAPQVLILSHPSVGGFLTHCGWNSTLEGVCAGLPLLTWPLFADQFTNEKLAVHLLKI 318
+ DW PQ+ IL + F+TH G + EG+ P++ P DQF N + + L +
Sbjct: 287 VHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADM-LQGLGV 343
Query: 319 GVKIGVENPMTWGEEQNIGVLVKRDDVKNAVERLMDE-GNDGEERRNRALNLAKM-AKMA 376
K+ E + LV +V + R+ E +G RR L A++ A+
Sbjct: 344 ARKLATEEATADLLRETALALVDDPEVARRLRRIQAEMAQEGGTRRAADLIEAELPARHE 403
Query: 377 IQEGGSSHLNI 387
QE N+
Sbjct: 404 RQEPVGDRPNV 414
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 259 IWDWAPQVLILSHPSVGGFLTHCGWNSTLEGVCAGLPLLTWPLFADQFTNEKLAVHL 315
+ W PQ+ IL+ S F+TH G ST+E + +P++ P A+Q N + V L
Sbjct: 309 VHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL 363
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 67/162 (41%), Gaps = 33/162 (20%)
Query: 157 IGPVSLSNKEYSDKAQRGNTSSL---DEHKCLKWLDSKD-PKSVVYACLGS----MCNLI 208
I P SL E+ + +R + ++ WL S+D + +VY LG+ ++
Sbjct: 201 IFPPSLQEPEFRARPRRHELRPVPFAEQGDLPAWLSSRDTARPLVYLTLGTSSGGTVEVL 260
Query: 209 PSQMMELGLGLEA----SNRPFIWVIREGETSKELKKWVVEDGFEERIKGRGLVIWDWAP 264
+ + L GL+A ++ P + V GE ++ + W P
Sbjct: 261 RAAIDGLA-GLDADVLVASGPSLDVSGLGEVPANVR------------------LESWVP 301
Query: 265 QVLILSHPSVGGFLTHCGWNSTLEGVCAGLPLLTWPLFADQF 306
Q +L H V + H G +TL + AG+P L++P D F
Sbjct: 302 QAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSF 341
>pdb|1J0G|A Chain A, Solution Structure Of Mouse Hypothetical 9.1 Kda Protein,
A Ubiquitin-Like Fold
Length = 92
Score = 32.3 bits (72), Expect = 0.53, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 79 LESISSESEYFSVPGLPDKIELTKKQVDSTQGQKFKAFEYKIGAATLAI---DGVIINSF 135
+ +S + S P LP K+ + T KF A E+K+ AAT AI DG+ IN
Sbjct: 8 MSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPA 67
Query: 136 EELEPAYVK---EYKKISRDK 153
+ ++K E + I RD+
Sbjct: 68 QTAGNVFLKHGSELRIIPRDR 88
>pdb|1WXS|A Chain A, Solution Structure Of Ufm1, A Ubiquitin-Fold Modifier
Length = 90
Score = 32.0 bits (71), Expect = 0.57, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 79 LESISSESEYFSVPGLPDKIELTKKQVDSTQGQKFKAFEYKIGAATLAI---DGVIINSF 135
+ +S + S P LP K+ + T KF A E+K+ AAT AI DG+ IN
Sbjct: 6 MSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPA 65
Query: 136 EELEPAYVK---EYKKISRDK 153
+ ++K E + I RD+
Sbjct: 66 QTAGNVFLKHGSELRIIPRDR 86
>pdb|3M3G|A Chain A, Crystal Structure Of Sm1, An Elicitor Of Plant Defence
Responses From Trichoderma Virens
Length = 120
Score = 32.0 bits (71), Expect = 0.70, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
Query: 260 WDWAPQVLILSHPSVGGFLTHCGWNSTLEGVCAGLPLLTWPLFADQFTNEKLAVHLLKIG 319
+ W+ Q I P +GG GWNS G C W L T LAV G
Sbjct: 32 YHWSTQGQIPRFPYIGGAAAVAGWNSASCGTC-------WKLQYSGHTIYVLAVDHAASG 84
Query: 320 VKIGVE--NPMTWGEEQNIG 337
I ++ N +T G+ +G
Sbjct: 85 FNIALDAMNALTGGQAVQLG 104
>pdb|1L7Y|A Chain A, Solution Nmr Structure Of C. Elegans Protein Zk652.3.
Northeast Structural Genomics Consortium Target Wr41
Length = 94
Score = 31.6 bits (70), Expect = 0.73, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 90 SVPGLPDKIELTKKQVDSTQGQKFKAFEYKIGAATLAI---DGVIINSFEELEPAYVK-- 144
S P LP K+ + T KF A E+K+ AAT AI DGV +N + ++K
Sbjct: 22 SDPKLPFKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGVGVNPAQPAGNIFLKHG 81
Query: 145 -EYKKISRDK 153
E + I RD+
Sbjct: 82 SELRLIPRDR 91
>pdb|3OBY|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Pelota Reveals
Inter- Domain Structural Plasticity
pdb|3OBY|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus Pelota Reveals
Inter- Domain Structural Plasticity
Length = 352
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 209 PSQMMELGLGLEASNRPFI--WVIREG-ETSKELKKWVVEDGFEERIK-GRGL 257
P Q+ L +E SNRP I I EG + L++W VE+ FEER+ G+G+
Sbjct: 113 PEQLERLRRAVEDSNRPEIVMLTIEEGYAVAGVLRQWGVEEIFEERMGYGKGM 165
>pdb|4AIB|A Chain A, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|B Chain B, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|C Chain C, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|D Chain D, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica
Length = 395
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 64 CFSVVCFNNIFASKFLESISSESEYFSVPGLPDKIELTKKQVDSTQGQKFKAFEYKIGAA 123
CF+V C K L + + S+ + + ++L D T Q FK + I A+
Sbjct: 53 CFAVKCNPEPHLVKLLGELGCGFDCASLNEIKEVLDLGFNPEDITYSQTFKPYNQLIEAS 112
Query: 124 TLAIDGVIINSFEELE 139
L I+ I++S +E++
Sbjct: 113 HLGINHTIVDSIDEVQ 128
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 262 WAPQVLILSHPSVGGFLTHCGWNSTLEGVCAGLPLLTWPLFADQ 305
W P +L+H LTH + LE AG+PL+ P FA +
Sbjct: 288 WIPFHSVLAH--ARACLTHGTTGAVLEAFAAGVPLVLVPHFATE 329
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,075,530
Number of Sequences: 62578
Number of extensions: 520598
Number of successful extensions: 1242
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1214
Number of HSP's gapped (non-prelim): 19
length of query: 398
length of database: 14,973,337
effective HSP length: 101
effective length of query: 297
effective length of database: 8,652,959
effective search space: 2569928823
effective search space used: 2569928823
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)