BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037641
(208 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1
SV=1
Length = 1002
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 104/190 (54%), Gaps = 5/190 (2%)
Query: 23 LVVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSL----KKKIPKSDMFRANAAFREVD 78
+ + EA++++Y R+LVCAP N D ++ L +I +++FR NAA R +
Sbjct: 429 MTLVEAIVQLYTTQRNARVLVCAPSNSAADHILEKLLCLEGVRIKDNEIFRLNAATRSYE 488
Query: 79 GVPVDILPLCLYEGGECFQLPSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDA 138
+ +I+ C ++ F+ P L+ L R++++ ST+ S+ L+ EG+ GHF+HI L +A
Sbjct: 489 EIKPEIIRFCFFDE-LIFKCPPLKALTRYKLVVSTYMSASLLNAEGVNRGHFTHILLDEA 547
Query: 139 SSATEPETMIALTNLANEHTTVILTGTPNNRTSWVRSDIARKNGLRVSHFERLHATKTYS 198
A+EPE MIA++NL T V+L G P + S A GL S+ ERL Y
Sbjct: 548 GQASEPENMIAVSNLCLTETVVVLAGDPRQLGPVIYSRDAESLGLGKSYLERLFECDYYC 607
Query: 199 NFNPMFITML 208
+ ++T L
Sbjct: 608 EGDENYVTKL 617
>sp|Q0V8H6|MOV10_BOVIN Putative helicase MOV-10 OS=Bos taurus GN=MOV10 PE=2 SV=1
Length = 1003
Score = 107 bits (267), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 101/194 (52%), Gaps = 13/194 (6%)
Query: 27 EAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILP 86
EA+ ++ K K IL CAP N D+L + L+ +P S ++R A R++ VP DI P
Sbjct: 536 EAIKQVVKHLPKAHILACAPSNSGADLLCQRLRVHLP-SSIYRLLAPSRDIHLVPEDIKP 594
Query: 87 LCLYEGGEC-FQLPSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDASSATEPE 145
C ++ + F PS ++L +RV+ +T ++ RL + P HF+HIF+ +A A EPE
Sbjct: 595 CCNWDAKKGDFVFPSKKKLQEYRVLITTLITASRLVSAQFPIDHFTHIFIDEAGHAMEPE 654
Query: 146 TMIALTNLA------NEHTTVILTGTPNNRTSWVRSDIARKNGLRVSHFERLHA-----T 194
+++A+ L N ++L G P +R + +K+GL S ERL
Sbjct: 655 SLVAIAGLMEVKEADNPGGQLVLAGDPRQLGPVLRCPLTQKHGLGYSLLERLLTFNALYK 714
Query: 195 KTYSNFNPMFITML 208
K +NP FIT L
Sbjct: 715 KGPDGYNPQFITKL 728
>sp|Q9HCE1|MOV10_HUMAN Putative helicase MOV-10 OS=Homo sapiens GN=MOV10 PE=1 SV=2
Length = 1003
Score = 103 bits (257), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 102/195 (52%), Gaps = 15/195 (7%)
Query: 27 EAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILP 86
EA+ ++ K K IL CAP N D+L + L+ +P S ++R A R++ VP DI P
Sbjct: 536 EAIKQVVKHLPKAHILACAPSNSGADLLCQRLRVHLP-SSIYRLLAPSRDIRMVPEDIKP 594
Query: 87 LCLYEG--GECFQLPSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDASSATEP 144
C ++ GE + P+ ++L +RV+ +T ++ RL + P HF+HIF+ +A EP
Sbjct: 595 CCNWDAKKGE-YVFPAKKKLQEYRVLITTLITAGRLVSAQFPIDHFTHIFIDEAGHCMEP 653
Query: 145 ETMIALTNLANEHTT------VILTGTPNNRTSWVRSDIARKNGLRVSHFERLHA----- 193
E+++A+ L T ++L G P +RS + +K+GL S ERL
Sbjct: 654 ESLVAIAGLMEVKETGDPGGQLVLAGDPRQLGPVLRSPLTQKHGLGYSLLERLLTYNSLY 713
Query: 194 TKTYSNFNPMFITML 208
K ++P FIT L
Sbjct: 714 KKGPDGYDPQFITKL 728
>sp|P23249|MOV10_MOUSE Putative helicase MOV-10 OS=Mus musculus GN=Mov10 PE=1 SV=2
Length = 1004
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 103/195 (52%), Gaps = 15/195 (7%)
Query: 27 EAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILP 86
EA+ ++ K K IL CAP N D+L + L+ +P S ++R A R++ VP DI
Sbjct: 537 EAIKQVVKHLPKAHILACAPSNSGADLLCQRLRVHLP-SSIYRLLAPSRDIRMVPEDIKT 595
Query: 87 LCLYEG--GECFQLPSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDASSATEP 144
C ++ GE + P+ + L ++RV+ +T ++ RL + P HF+HIF+ +A EP
Sbjct: 596 CCNWDAKKGE-YVYPAKKHLQQYRVLITTLITASRLVSAQFPIDHFTHIFIDEAGHCMEP 654
Query: 145 ETMIALTNL------ANEHTTVILTGTPNNRTSWVRSDIARKNGLRVSHFERLHA----- 193
E+++A+ L N ++L G P +RS +A K+GL S ERL A
Sbjct: 655 ESLVAIAGLMDVKETGNPGGQLVLAGDPRQLGPVLRSPLALKHGLGYSLLERLLAYNSLY 714
Query: 194 TKTYSNFNPMFITML 208
K + ++P FIT L
Sbjct: 715 KKGPNGYDPQFITKL 729
>sp|Q5ZKD7|MOV10_CHICK Putative helicase MOV-10 OS=Gallus gallus GN=MOV10 PE=2 SV=1
Length = 967
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 96/196 (48%), Gaps = 14/196 (7%)
Query: 27 EAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILP 86
EA+ +++ RIL CAP N D+L + L I ++R A+ VP D+ P
Sbjct: 528 EAIKQVWSCFKDARILACAPSNSAADLLCQRLLTNIAPRYIYRIMASSANYKDVPADVRP 587
Query: 87 LCLYEGGE-CFQLPSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDASSATEPE 145
C ++ E C+ PS + L +R++ +T ++ RL + P G+FSH+F+ + A EPE
Sbjct: 588 CCNWDDSEKCYVYPSKKLLKPYRILITTLVTAGRLVSANFPPGYFSHVFIDECGHAVEPE 647
Query: 146 TMIALTNLAN--------EHTTVILTGTPNNRTSWVRSDIARKNGLRVSHFERLH----- 192
+++A+ L ++L G P RS +A ++GL S ERL
Sbjct: 648 SVVAIAGLLTTMDPDTNPNGGQLVLAGDPQQLGPVPRSPLAAQHGLGTSLLERLMLHNAL 707
Query: 193 ATKTYSNFNPMFITML 208
K+ +NP F+T L
Sbjct: 708 YAKSDEGYNPQFVTKL 723
>sp|Q99MV5|M10L1_MOUSE Putative helicase Mov10l1 OS=Mus musculus GN=Mov10l1 PE=1 SV=1
Length = 1187
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 101/198 (51%), Gaps = 19/198 (9%)
Query: 23 LVVREAVLEIYKRSSKCRILVCAPINRTGD-VLMRSLKKKIPK-SDMFRANAAFREVDGV 80
+ + EAVL+++ RILVCAP N D V +R + K+PK + M R NA R + +
Sbjct: 780 VTIIEAVLQVHYALPDSRILVCAPSNSAADLVCLRLHESKVPKPAAMVRVNATCRFEETI 839
Query: 81 PVDILPLCLYEGGECFQLPSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDASS 140
I P C GE + RFR+I +T +S+ + G+ G+F+H+F+ +A
Sbjct: 840 IDAIKPYC--RDGE-----DIWRASRFRIIITTCSSAGLFYQIGVRVGYFTHVFVDEAGQ 892
Query: 141 ATEPETMIALTNLANEHTTVILTGTPNNRTSWVRSDIARKNGLRVSHFERLHATKTY--- 197
A+EPE +I L +++ + ++L G P ++S +A GL VS ERL + Y
Sbjct: 893 ASEPECLIPLGLISDINGQIVLAGDPMQLGPVIKSRLAMAYGLNVSMLERLMSRPAYLRD 952
Query: 198 -------SNFNPMFITML 208
+NP+ +T L
Sbjct: 953 ENAFGACGAYNPLLVTKL 970
>sp|Q1LXK4|M10B1_DANRE Putative helicase mov-10-B.1 OS=Danio rerio GN=mov10b.1 PE=2 SV=2
Length = 1013
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 97/194 (50%), Gaps = 9/194 (4%)
Query: 23 LVVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSL--KKKIPKSDMFRANAAFREVDGV 80
+ + EA+ ++ K + RIL CAP N D L L + + +++R A+ R +
Sbjct: 558 VTIVEAIKQVEKNTGGARILACAPSNSAADQLGEKLITSQHVDARNIYRIYASSRNPKEI 617
Query: 81 PVDILPLCLYEGGECFQLPSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDASS 140
P +L GE P ++LM ++++ T ++ RL + G P GHFSHIF+ +A
Sbjct: 618 P-KVLENNSNVEGENIIFPCKEDLMPYKIVVCTLVTAGRLVSGGFPVGHFSHIFVDEAGH 676
Query: 141 ATEPETMIALTNLANEHT-TVILTGTPNNRTSWVRSDIARKNGLRVSHFERLHA-----T 194
A EPE +I++ L N T ++L G P +RS A K GL +S ERL
Sbjct: 677 AVEPEIVISVAGLLNAETGQLVLAGDPKQLGPILRSPFAIKYGLGLSLLERLMTQNELYQ 736
Query: 195 KTYSNFNPMFITML 208
K + F+ ++T L
Sbjct: 737 KGDTGFDNRYVTKL 750
>sp|Q9BXT6|M10L1_HUMAN Putative helicase Mov10l1 OS=Homo sapiens GN=MOV10L1 PE=1 SV=1
Length = 1211
Score = 92.0 bits (227), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 97/198 (48%), Gaps = 19/198 (9%)
Query: 23 LVVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSL--KKKIPKSDMFRANAAFREVDGV 80
+ + EAVL+++ RILVCAP N D++ L K + + M R NA R + V
Sbjct: 778 VTIIEAVLQVHFALPDSRILVCAPSNSAADLVCLRLHESKVLQPATMVRVNATCRFEEIV 837
Query: 81 PVDILPLCLYEGGECFQLPSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDASS 140
+ P C GE + + RFR+I +T +SS + G+ GHF+H+F+ +A
Sbjct: 838 IDAVKPYC--RDGE-----DIWKASRFRIIITTCSSSGLFYQIGVRVGHFTHVFVDEAGQ 890
Query: 141 ATEPETMIALTNLANEHTTVILTGTPNNRTSWVRSDIARKNGLRVSHFERLHATKTYSN- 199
A+EPE +I L +++ ++L G P ++S +A GL VS ERL + Y
Sbjct: 891 ASEPECLIPLGLMSDISGQIVLAGDPMQLGPVIKSRLAMAYGLNVSFLERLMSRPAYQRD 950
Query: 200 ---------FNPMFITML 208
NP+ +T L
Sbjct: 951 ENAFGACGAHNPLLVTKL 968
>sp|Q6J5K9|ARMI_DROME Probable RNA helicase armi OS=Drosophila melanogaster GN=armi PE=2
SV=3
Length = 1274
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 93/210 (44%), Gaps = 28/210 (13%)
Query: 27 EAVLEIYKRSSKCRILVCAPINRTGDVLMRSL--KKKIPKSDMFRANAAFR-EVDGVPVD 83
E +L++ + RILV P N + D++ + L K + + D R + + E D +P +
Sbjct: 821 ETLLQLVRNLPGARILVGTPSNSSADLVTKRLIDSKALLQGDFIRLVSYNQVEKDLIPPE 880
Query: 84 ILPLCLYEG----GECFQLPSLQE-----------LMRFRVIFSTFTSSFRLHNEGIPAG 128
I+ C G C + E + R+ ST T+ G PAG
Sbjct: 881 IMSYCATSDVGAVGSCEDKMMVTESGLKLRCQAKFIGTHRITISTCTTLGNFLQLGFPAG 940
Query: 129 HFSHIFLLDASSATEPETMIALTNLANEHTTVILTGTPNNRTSWVRSDIARKNGLRVSHF 188
HF+H+ +A TEPETM+ + L + + V+L+G P S V S IA K G +S
Sbjct: 941 HFTHVLFDEAGQCTEPETMVPIVMLTKKRSQVVLSGDPRQLQSIVTSRIASKMGFSISFL 1000
Query: 189 ERLHATKTY----------SNFNPMFITML 208
ERL Y S +NP+ +T L
Sbjct: 1001 ERLLERSPYRKDLQRFPESSGYNPLVLTKL 1030
>sp|Q1LXK5|M10B2_DANRE Putative helicase mov-10-B.2 OS=Danio rerio GN=mov10b.2 PE=3 SV=1
Length = 1015
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 83/172 (48%), Gaps = 4/172 (2%)
Query: 23 LVVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSL--KKKIPKSDMFRANAAFREVDGV 80
+ + EA+ ++ K IL CAP N D L L + + ++R A+ R +
Sbjct: 563 VTIVEAIKQVEKNIPDAYILACAPSNSAADQLCEKLITSEHVDAHKIYRLYASSRNQKDI 622
Query: 81 PVDILPLCLYEGGECFQLPSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDASS 140
P + C + E P ++LM ++++ T ++ RL G HF+H F+ +A
Sbjct: 623 PKILKDNCNVDE-EMIDFPCKEDLMSYKILICTLVTAGRLVTGGFSEDHFTHNFVDEAGH 681
Query: 141 ATEPETMIALTNLAN-EHTTVILTGTPNNRTSWVRSDIARKNGLRVSHFERL 191
A E ET+I++ L N E ++L G P +RS +A +GL VS ERL
Sbjct: 682 AVESETIISVAGLLNAEKGQLVLAGDPKQLGPILRSPLAINHGLDVSLLERL 733
>sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain OS=Danio rerio GN=helz
PE=2 SV=1
Length = 1860
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 8/172 (4%)
Query: 27 EAVLEIYKRSSKCRILVCAPINRTGDVLMRS-----LKKKIPKSDMFRANAAFREVDGVP 81
+AV I K+ + R+L+C N D+ ++ ++ P + R R V V
Sbjct: 673 QAVKHILKQP-ESRVLICTHSNSAADLYIKDYLHPYVEAGNPHARPLRVYFRNRWVKTVH 731
Query: 82 VDILPLCLYEGGE-CFQLPSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDASS 140
+ CL G FQ+P+ Q++ R RV+ T ++S L + G F+HI L +A+
Sbjct: 732 PLVQQYCLISGAHFTFQMPTRQDVERHRVVVVTLSTSQYLCQLDLEPGIFTHILLDEAAQ 791
Query: 141 ATEPETMIALTNLANEHTTVILTGTPNNRTSWVRSDIARKNGLRVSHFERLH 192
A E ET++ L LA + T V+L G + +V S+ AR+ L VS +RL+
Sbjct: 792 AMECETIMPLA-LAVKSTRVVLAGDHMQLSPFVYSEFARERNLHVSLLDRLY 842
>sp|P42694|HELZ_HUMAN Probable helicase with zinc finger domain OS=Homo sapiens GN=HELZ
PE=1 SV=2
Length = 1942
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 86/172 (50%), Gaps = 8/172 (4%)
Query: 27 EAVLEIYKRSSKCRILVCAPINRTGDVLMRS-----LKKKIPKSDMFRANAAFREVDGVP 81
+AV I ++ + RIL+C N D+ ++ ++ P++ R R V V
Sbjct: 680 QAVKHILQQQ-ETRILICTHSNSAADLYIKDYLHPYVEAGNPQARPLRVYFRNRWVKTVH 738
Query: 82 VDILPLCLYEGGEC-FQLPSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDASS 140
+ CL FQ+P +++++ RV+ T +S L + G F+HI L +A+
Sbjct: 739 PVVHQYCLISSAHSTFQMPQKEDILKHRVVVVTLNTSQYLCQLDLEPGFFTHILLDEAAQ 798
Query: 141 ATEPETMIALTNLANEHTTVILTGTPNNRTSWVRSDIARKNGLRVSHFERLH 192
A E ET++ L LA ++T ++L G + +V S+ AR+ L VS +RL+
Sbjct: 799 AMECETIMPLA-LATQNTRIVLAGDHMQLSPFVYSEFARERNLHVSLLDRLY 849
>sp|Q6DFV5|HELZ_MOUSE Probable helicase with zinc finger domain OS=Mus musculus GN=Helz
PE=1 SV=2
Length = 1964
Score = 63.9 bits (154), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 83/164 (50%), Gaps = 7/164 (4%)
Query: 35 RSSKCRILVCAPINRTGDVLMRS-----LKKKIPKSDMFRANAAFREVDGVPVDILPLCL 89
+ + RIL+C N D+ ++ ++ P++ R R V V + CL
Sbjct: 687 QQQETRILICTHSNSAADLYIKDYLHPYVEAGNPQARPLRVYFRNRWVKTVHPVVHQYCL 746
Query: 90 YEGGEC-FQLPSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDASSATEPETMI 148
+ FQ+P +++++ RV+ T ++S L + G F+H+ L +A+ A E ET++
Sbjct: 747 ISSTQSTFQMPQKEDILKHRVVVVTLSTSQYLCQLDLEPGFFTHVLLDEAAQAMECETIM 806
Query: 149 ALTNLANEHTTVILTGTPNNRTSWVRSDIARKNGLRVSHFERLH 192
L LA ++T ++L G + +V S+ AR+ L VS +RL+
Sbjct: 807 PLA-LATKNTRIVLAGDHMQLSPFVYSEFARERNLHVSLLDRLY 849
>sp|Q9BYK8|HELZ2_HUMAN Helicase with zinc finger domain 2 OS=Homo sapiens GN=HELZ2 PE=1
SV=6
Length = 2649
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 11/143 (7%)
Query: 28 AVLEIYKRSSKCRILVCAPINRTGDVLMRS-----LKKKIPKSDMFRANAAFREVDGV-P 81
A LE+ +R + ++L+C N D+ +R + P++ R R + P
Sbjct: 557 ASLEVIRRP-ETKVLICTHTNSAADIYIREYFHSHVSGGHPEATPLRVMYTDRPLSQTDP 615
Query: 82 VDILPLCLYEGGECFQLPSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDASSA 141
V + CL + + F+ P+ EL R RV+ +T + + L +P G FSHI + +A+
Sbjct: 616 VTLQYCCLTDDRQAFRPPTRAELARHRVVVTTTSQARELR---VPVGFFSHILIDEAAQM 672
Query: 142 TEPETMIALTNLANEHTTVILTG 164
E E + L A+ T ++L G
Sbjct: 673 LECEALTPLA-YASHGTRLVLAG 694
Score = 32.3 bits (72), Expect = 2.4, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 132 HIFLLDASSATEPETMIALTNLANEHTTVILTGTPNNRTSWVRSDIARKNGLRVSHFERL 191
I + +A ATEPET+I L + V+L G V+++ + GL S FER
Sbjct: 2356 QILVDEAGMATEPETLIPLVQFP-QAEKVVLLGDHKQLRPVVKNERLQNLGLDRSLFERY 2414
Query: 192 H 192
H
Sbjct: 2415 H 2415
>sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=upf1 PE=3 SV=2
Length = 925
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 81/202 (40%), Gaps = 35/202 (17%)
Query: 18 LSKTGLVVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREV 77
++ +V A ++ KR S +LVCAP N V + L +KI ++ + A +
Sbjct: 422 VTSASVVYHLATMQSRKRKSHSPVLVCAPSN----VAVDQLAEKIHRTGLRVVRVAAKSR 477
Query: 78 DGVPVDILPLCLYEGGECFQL-PSLQELMRFRVIFSTFT----SSFRL-----HNEGIPA 127
+ + + L L+E + ++ P LQ L++ R + + R+ E + A
Sbjct: 478 EDIESSVSFLSLHEQIKNYKFNPELQRLLKLRSENNELSIQDEKKLRILVAAAEKELLRA 537
Query: 128 GH------------------FSHIFLLDASSATEPETMIALTNLANEHTTVILTGTPNNR 169
H F + + +A+ A+EPE MI L A + V+L G
Sbjct: 538 AHVICCTCVGAGDRRISKYKFRSVLIDEATQASEPECMIPLVLGAKQ---VVLVGDHQQL 594
Query: 170 TSWVRSDIARKNGLRVSHFERL 191
V + L S FERL
Sbjct: 595 GPVVMNKKVALASLSQSLFERL 616
>sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2
SV=1
Length = 818
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 130 FSHIFLLDASSATEPETMIALTNLANEHTTVILTGTPNNRTSWVRSDIARKNGLRVSHFE 189
F + + +A+ A EP T+I L A V L G P + V S +A+ +G S FE
Sbjct: 484 FDVVIIDEAAQAVEPATLIPL---ATRCKQVFLVGDPKQLPATVISTVAQDSGYGTSMFE 540
Query: 190 RLH 192
RL
Sbjct: 541 RLQ 543
>sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1
SV=2
Length = 1129
Score = 34.3 bits (77), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 82/218 (37%), Gaps = 35/218 (16%)
Query: 1 MQTIAQFELQMRNNSDNLSKTGLVVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKK 60
++T+ Q L + KT V ++ R +LVCAP N D L + +
Sbjct: 490 VKTVLQRPLSLIQGPPGTGKT--VTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 547
Query: 61 KIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECFQLPSLQELM--------------- 105
K + R A RE PV L L + +P LQ+L
Sbjct: 548 TGLK--VVRLCAKSREAIDSPVSFLAL-HNQIRNMDSMPELQKLQQLKDETGELSSADEK 604
Query: 106 RFRVIFSTFTSSFRLHNEGI-----PAG-------HFSHIFLLDASSATEPETMIALTNL 153
R+R + T ++ + I AG F I + +++ ATEPE M+ +
Sbjct: 605 RYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLG 664
Query: 154 ANEHTTVILTGTPNNRTSWVRSDIARKNGLRVSHFERL 191
A + +IL G V A K GL S FERL
Sbjct: 665 AKQ---LILVGDHCQLGPVVMCKKAAKAGLSQSLFERL 699
>sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1
SV=2
Length = 1124
Score = 34.3 bits (77), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 82/218 (37%), Gaps = 35/218 (16%)
Query: 1 MQTIAQFELQMRNNSDNLSKTGLVVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKK 60
++T+ Q L + KT V ++ R +LVCAP N D L + +
Sbjct: 485 VKTVLQRPLSLIQGPPGTGKT--VTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 542
Query: 61 KIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECFQLPSLQELM--------------- 105
K + R A RE PV L L + +P LQ+L
Sbjct: 543 TGLK--VVRLCAKSREAIDSPVSFLAL-HNQIRNMDSMPELQKLQQLKDETGELSSADEK 599
Query: 106 RFRVIFSTFTSSFRLHNEGI-----PAG-------HFSHIFLLDASSATEPETMIALTNL 153
R+R + T ++ + I AG F I + +++ ATEPE M+ +
Sbjct: 600 RYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLG 659
Query: 154 ANEHTTVILTGTPNNRTSWVRSDIARKNGLRVSHFERL 191
A + +IL G V A K GL S FERL
Sbjct: 660 AKQ---LILVGDHCQLGPVVMCKKAAKAGLSQSLFERL 694
>sp|O32321|C20AA_BACUF Pesticidal crystal protein cry20Aa OS=Bacillus thuringiensis subsp.
fukuokaensis GN=cry20Aa PE=2 SV=1
Length = 753
Score = 32.3 bits (72), Expect = 2.1, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 16/91 (17%)
Query: 120 LHNEGIPAGHF---SHIFLLDASSATEPET---MIALTNLANEHTTVILTGTPNNRT--- 170
L++ IP+ HF +H L S EP L + NE ++ PN R
Sbjct: 421 LYSVEIPSSHFRFENHTVFLPGESGLEPNERNYTHRLFQMMNE-----VSVNPNARGRVF 475
Query: 171 --SWVRSDIARKNGLRVSHFERLHATKTYSN 199
+W + R NGLR ++ A KT SN
Sbjct: 476 LHAWTHRSLRRTNGLRSDQILQIPAVKTISN 506
>sp|Q6ZU11|YD002_HUMAN Uncharacterized protein FLJ44066 OS=Homo sapiens PE=2 SV=1
Length = 926
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 130 FSHIFLLDASSATEPETMIALTNLANEHTTVILTGTPNNRTSWVR-SDIARKNGLRVSHF 188
F + L + S TEP +++ + E +IL G P ++ SD A +NGL + F
Sbjct: 625 FPVVVLDECSQITEPASLLPIARFECE--KLILVGDPKQLPPTIQGSDAAHENGLEQTLF 682
Query: 189 ERL 191
+RL
Sbjct: 683 DRL 685
>sp|C1JJY7|VP8_HAPV1 Virion protein 8 OS=Halorubrum pleomorphic virus 1 GN=ORF8 PE=4
SV=1
Length = 343
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 12/112 (10%)
Query: 76 EVDGVPVDILPLCLYEGGECFQLPSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIF- 134
E D + +L L++ G+ + L ++ R++ T + + + + SHI
Sbjct: 59 EADRGSLALLSDALHQEGKDLEETQLGSVLMDRLVTDRATEAVQSGDSSM----MSHIVG 114
Query: 135 ----LLDASSATEPETMIALTNLANEHTTVILTGTPNN---RTSWVRSDIAR 179
LDASS T P ++ L + TTV+ G PN+ T W+ +++AR
Sbjct: 115 VTEQDLDASSLTLPARLLDLLDNNGALTTVLAAGDPNSGKTNTVWLLTELAR 166
>sp|Q1D0P7|DNLJ_MYXXD DNA ligase OS=Myxococcus xanthus (strain DK 1622) GN=ligA PE=3 SV=1
Length = 672
Score = 32.0 bits (71), Expect = 2.9, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 28 AVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPL 87
A LE K++++ R L I GD ++L + P+S+M A+ ++ V D+ P+
Sbjct: 501 ASLERSKQTTQRRFLYSLGIRHVGDATAKALAEAFPRSEML-FEASLEDISRVK-DVGPI 558
Query: 88 CLYEGGECFQLPSLQELMR 106
FQ P QE +R
Sbjct: 559 MAQVIHTFFQEPQNQEAIR 577
>sp|Q82W86|SECA_NITEU Protein translocase subunit SecA OS=Nitrosomonas europaea (strain
ATCC 19718 / NBRC 14298) GN=secA PE=3 SV=1
Length = 909
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 25/54 (46%)
Query: 139 SSATEPETMIALTNLANEHTTVILTGTPNNRTSWVRSDIARKNGLRVSHFERLH 192
+ A +P+ + TN+A T ++L G P + +R+D + E +H
Sbjct: 487 AQAGQPKMVTIATNMAGRGTDIVLGGNPEQEINRIRADETLDEAAKSKKIEEIH 540
>sp|Q67KI2|HIS8_SYMTH Histidinol-phosphate aminotransferase OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=hisC PE=3 SV=1
Length = 361
Score = 31.2 bits (69), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 41 ILVCAPINRTGDVL----MRSLKKKIPKSDMFRANAAFREVDGVPVD 83
+ +C P N TG V +R+ +++P S + + A+RE D P D
Sbjct: 156 LFLCRPNNPTGTVFAEADLRAALERVPPSTLVVVDEAYREFDETPFD 202
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,956,189
Number of Sequences: 539616
Number of extensions: 2778898
Number of successful extensions: 7915
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 7876
Number of HSP's gapped (non-prelim): 28
length of query: 208
length of database: 191,569,459
effective HSP length: 112
effective length of query: 96
effective length of database: 131,132,467
effective search space: 12588716832
effective search space used: 12588716832
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.9 bits)