Query 037641
Match_columns 208
No_of_seqs 132 out of 1463
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 04:18:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037641.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037641hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b3f_X DNA-binding protein smu 100.0 1.1E-31 3.6E-36 253.4 12.8 165 19-195 214-428 (646)
2 2gk6_A Regulator of nonsense t 99.9 3.2E-26 1.1E-30 215.5 14.9 166 20-194 205-401 (624)
3 2wjy_A Regulator of nonsense t 99.9 6.8E-25 2.3E-29 211.7 17.3 166 20-194 381-577 (800)
4 2xzl_A ATP-dependent helicase 99.9 2E-24 6.7E-29 208.6 15.2 163 20-194 385-579 (802)
5 1w36_D RECD, exodeoxyribonucle 99.3 8.5E-12 2.9E-16 117.1 10.3 151 18-194 172-332 (608)
6 3e1s_A Exodeoxyribonuclease V, 98.9 4E-09 1.4E-13 98.4 9.1 111 19-175 213-324 (574)
7 3upu_A ATP-dependent DNA helic 98.8 9.3E-09 3.2E-13 92.9 9.1 48 128-176 127-174 (459)
8 3vkw_A Replicase large subunit 98.5 1.5E-07 5.2E-12 85.2 7.1 46 129-176 234-279 (446)
9 3lfu_A DNA helicase II; SF1 he 98.1 2.8E-06 9.6E-11 79.0 5.0 43 21-63 33-79 (647)
10 2gxq_A Heat resistant RNA depe 97.5 0.0007 2.4E-08 53.2 9.9 104 20-143 48-158 (207)
11 1z63_A Helicase of the SNF2/RA 97.2 0.00087 3E-08 60.1 7.8 124 16-169 65-190 (500)
12 3mwy_W Chromo domain-containin 97.2 0.00061 2.1E-08 65.5 7.1 144 16-171 264-410 (800)
13 1hv8_A Putative ATP-dependent 97.1 0.0014 4.8E-08 55.4 7.5 107 20-145 54-163 (367)
14 1qde_A EIF4A, translation init 97.0 0.0019 6.4E-08 51.5 7.8 103 20-143 61-169 (224)
15 1wp9_A ATP-dependent RNA helic 97.0 0.0046 1.6E-07 53.6 10.8 110 37-167 51-167 (494)
16 3b6e_A Interferon-induced heli 97.0 0.001 3.6E-08 52.3 5.7 105 21-145 59-178 (216)
17 3iuy_A Probable ATP-dependent 97.0 0.0039 1.3E-07 49.9 9.2 87 37-143 93-181 (228)
18 2oxc_A Probable ATP-dependent 96.9 0.0012 4E-08 53.3 5.8 107 20-144 71-181 (230)
19 1rif_A DAR protein, DNA helica 96.9 0.0024 8.3E-08 53.1 7.7 99 21-145 139-241 (282)
20 2pl3_A Probable ATP-dependent 96.9 0.0039 1.3E-07 50.2 8.6 105 20-143 72-185 (236)
21 1vec_A ATP-dependent RNA helic 96.9 0.0022 7.6E-08 50.3 6.9 105 20-145 50-162 (206)
22 1z3i_X Similar to RAD54-like; 96.8 0.003 1E-07 59.2 8.5 139 16-170 88-234 (644)
23 3ber_A Probable ATP-dependent 96.8 0.0056 1.9E-07 50.2 9.1 104 20-143 90-200 (249)
24 3bor_A Human initiation factor 96.7 0.01 3.6E-07 47.9 10.1 103 20-143 77-187 (237)
25 1t6n_A Probable ATP-dependent 96.7 0.0041 1.4E-07 49.4 7.2 102 21-143 62-172 (220)
26 2fz4_A DNA repair protein RAD2 96.7 0.013 4.6E-07 47.8 10.2 111 20-167 118-229 (237)
27 3dkp_A Probable ATP-dependent 96.6 0.0045 1.6E-07 50.1 7.2 107 20-143 76-189 (245)
28 3pey_A ATP-dependent RNA helic 96.6 0.0076 2.6E-07 51.3 8.6 102 20-143 54-159 (395)
29 1wrb_A DJVLGB; RNA helicase, D 96.6 0.0081 2.8E-07 48.9 8.2 87 38-143 100-188 (253)
30 4a2p_A RIG-I, retinoic acid in 96.5 0.013 4.4E-07 52.5 10.1 106 21-146 33-147 (556)
31 3oiy_A Reverse gyrase helicase 96.5 0.004 1.4E-07 54.3 6.3 100 21-139 47-149 (414)
32 1q0u_A Bstdead; DEAD protein, 96.5 0.015 5E-07 46.2 9.1 106 20-143 51-164 (219)
33 3h1t_A Type I site-specific re 96.4 0.013 4.3E-07 53.9 9.5 63 106-168 274-343 (590)
34 3fho_A ATP-dependent RNA helic 96.3 0.0086 2.9E-07 54.2 7.8 101 21-143 169-273 (508)
35 2z0m_A 337AA long hypothetical 96.3 0.014 4.6E-07 48.7 8.5 99 21-143 42-143 (337)
36 1s2m_A Putative ATP-dependent 96.3 0.0079 2.7E-07 51.8 7.2 106 20-145 68-179 (400)
37 1fuu_A Yeast initiation factor 96.3 0.0062 2.1E-07 52.0 6.4 105 20-143 68-176 (394)
38 3tbk_A RIG-I helicase domain; 96.3 0.015 5.2E-07 51.8 9.1 106 21-146 30-144 (555)
39 1xti_A Probable ATP-dependent 96.2 0.012 4.2E-07 50.2 7.6 103 21-144 56-167 (391)
40 2oca_A DAR protein, ATP-depend 96.1 0.013 4.3E-07 52.6 7.5 120 21-166 139-262 (510)
41 3fht_A ATP-dependent RNA helic 96.1 0.01 3.4E-07 51.0 6.5 103 21-143 75-182 (412)
42 4a2q_A RIG-I, retinoic acid in 96.1 0.024 8.2E-07 54.1 9.6 107 21-147 274-389 (797)
43 3eiq_A Eukaryotic initiation f 96.0 0.011 3.7E-07 51.0 6.2 89 37-144 107-198 (414)
44 3ly5_A ATP-dependent RNA helic 95.9 0.026 8.7E-07 46.5 7.8 105 20-143 101-215 (262)
45 2i4i_A ATP-dependent RNA helic 95.7 0.032 1.1E-06 48.0 8.3 86 39-143 102-189 (417)
46 2j0s_A ATP-dependent RNA helic 95.7 0.021 7E-07 49.4 6.9 107 20-145 84-195 (410)
47 2ykg_A Probable ATP-dependent 95.7 0.08 2.7E-06 49.2 11.3 106 21-146 39-153 (696)
48 2db3_A ATP-dependent RNA helic 95.5 0.063 2.1E-06 47.4 9.4 105 21-144 104-218 (434)
49 3dmq_A RNA polymerase-associat 95.4 0.06 2.1E-06 52.8 9.8 132 20-171 180-321 (968)
50 4gl2_A Interferon-induced heli 95.4 0.011 3.9E-07 54.9 4.3 103 21-143 33-150 (699)
51 3o8b_A HCV NS3 protease/helica 95.4 0.045 1.5E-06 51.8 8.3 79 38-147 257-335 (666)
52 3fe2_A Probable ATP-dependent 95.3 0.072 2.5E-06 42.9 8.5 86 37-143 101-190 (242)
53 2fwr_A DNA repair protein RAD2 95.2 0.088 3E-06 46.6 9.4 110 21-167 119-229 (472)
54 4a2w_A RIG-I, retinoic acid in 95.1 0.05 1.7E-06 53.2 8.1 106 21-146 274-388 (936)
55 2vl7_A XPD; helicase, unknown 95.1 0.025 8.5E-07 51.8 5.4 38 20-60 36-73 (540)
56 3crv_A XPD/RAD3 related DNA he 95.0 0.035 1.2E-06 50.8 6.2 38 20-60 32-69 (551)
57 2eyq_A TRCF, transcription-rep 94.9 0.053 1.8E-06 54.2 7.7 103 20-142 634-738 (1151)
58 3fmo_B ATP-dependent RNA helic 94.6 0.12 4E-06 43.6 8.0 101 20-143 141-249 (300)
59 3llm_A ATP-dependent RNA helic 94.4 0.073 2.5E-06 42.9 6.1 86 38-147 109-195 (235)
60 1gm5_A RECG; helicase, replica 94.4 0.076 2.6E-06 51.1 7.1 100 20-141 399-502 (780)
61 3fmp_B ATP-dependent RNA helic 94.3 0.18 6.2E-06 44.6 9.1 101 20-143 141-249 (479)
62 2p6r_A Afuhel308 helicase; pro 94.2 0.093 3.2E-06 49.2 7.3 98 21-142 51-151 (702)
63 1uaa_A REP helicase, protein ( 94.1 0.028 9.6E-07 52.6 3.3 40 24-63 31-72 (673)
64 2va8_A SSO2462, SKI2-type heli 93.4 0.12 4.2E-06 48.4 6.5 100 21-143 57-159 (715)
65 4ddu_A Reverse gyrase; topoiso 93.4 0.065 2.2E-06 53.4 4.7 98 21-138 104-205 (1104)
66 3l9o_A ATP-dependent RNA helic 93.3 0.064 2.2E-06 53.5 4.5 93 21-144 210-305 (1108)
67 2zj8_A DNA helicase, putative 92.9 0.18 6.1E-06 47.4 6.8 100 21-143 50-152 (720)
68 3sqw_A ATP-dependent RNA helic 92.9 0.077 2.6E-06 48.6 4.2 108 21-143 71-189 (579)
69 2xgj_A ATP-dependent RNA helic 92.8 0.093 3.2E-06 51.8 4.8 93 21-144 112-207 (1010)
70 1pjr_A PCRA; DNA repair, DNA r 92.7 0.056 1.9E-06 51.2 3.0 39 24-62 40-80 (724)
71 4a4z_A Antiviral helicase SKI2 92.7 0.12 4.2E-06 50.8 5.5 94 21-143 65-161 (997)
72 3i5x_A ATP-dependent RNA helic 92.7 0.087 3E-06 47.7 4.2 102 21-143 122-240 (563)
73 1gku_B Reverse gyrase, TOP-RG; 92.3 0.15 5.1E-06 50.5 5.5 87 37-143 98-189 (1054)
74 2o0j_A Terminase, DNA packagin 91.8 0.69 2.4E-05 40.8 8.7 124 15-168 186-315 (385)
75 4f92_B U5 small nuclear ribonu 90.7 0.39 1.3E-05 50.1 6.8 103 21-143 953-1060(1724)
76 2jlq_A Serine protease subunit 89.5 1.5 5.2E-05 38.7 9.0 39 19-59 31-69 (451)
77 2z83_A Helicase/nucleoside tri 88.8 1.2 4E-05 39.6 7.7 31 27-59 41-71 (459)
78 1uaa_A REP helicase, protein ( 88.7 0.44 1.5E-05 44.4 5.0 41 128-169 206-246 (673)
79 2xau_A PRE-mRNA-splicing facto 88.7 0.39 1.3E-05 46.0 4.7 90 38-150 140-230 (773)
80 3cpe_A Terminase, DNA packagin 87.9 2.8 9.7E-05 38.5 9.8 46 15-61 186-231 (592)
81 2l8b_A Protein TRAI, DNA helic 87.4 0.34 1.2E-05 38.7 2.9 41 131-171 123-163 (189)
82 3rc3_A ATP-dependent RNA helic 86.5 2.9 0.0001 39.4 9.2 88 21-144 166-254 (677)
83 1pjr_A PCRA; DNA repair, DNA r 84.6 0.88 3E-05 43.0 4.7 40 129-169 216-255 (724)
84 2whx_A Serine protease/ntpase/ 84.2 4.1 0.00014 37.8 9.0 37 21-59 197-236 (618)
85 2w00_A HSDR, R.ECOR124I; ATP-b 84.2 1.9 6.4E-05 42.8 6.9 124 20-168 310-440 (1038)
86 2b8t_A Thymidine kinase; deoxy 84.0 0.86 2.9E-05 37.0 3.8 38 127-165 87-124 (223)
87 2v6i_A RNA helicase; membrane, 83.1 4.1 0.00014 35.7 8.1 39 19-59 14-52 (431)
88 1tf5_A Preprotein translocase 82.4 4.7 0.00016 39.1 8.7 100 20-142 106-216 (844)
89 2orw_A Thymidine kinase; TMTK, 80.8 1 3.5E-05 35.0 3.0 36 129-165 76-111 (184)
90 2fsf_A Preprotein translocase 80.4 3.5 0.00012 40.0 7.0 100 20-142 97-207 (853)
91 1nkt_A Preprotein translocase 79.0 4.1 0.00014 39.8 7.0 100 20-142 134-244 (922)
92 2ipc_A Preprotein translocase 76.9 7.4 0.00025 38.3 8.1 39 20-58 102-140 (997)
93 3u4q_A ATP-dependent helicase/ 76.6 1.3 4.6E-05 44.4 3.0 37 24-60 39-79 (1232)
94 3u4q_A ATP-dependent helicase/ 75.0 2.5 8.6E-05 42.4 4.5 40 129-169 400-442 (1232)
95 1w36_B RECB, exodeoxyribonucle 74.9 1.7 5.7E-05 43.5 3.2 45 15-60 24-78 (1180)
96 1oyw_A RECQ helicase, ATP-depe 73.6 3.4 0.00012 37.3 4.7 99 21-142 51-152 (523)
97 2v1x_A ATP-dependent DNA helic 73.1 3.6 0.00012 37.9 4.8 38 21-61 70-107 (591)
98 1xx6_A Thymidine kinase; NESG, 71.1 3.5 0.00012 32.4 3.6 43 129-172 81-125 (191)
99 3e2i_A Thymidine kinase; Zn-bi 69.7 3.7 0.00013 33.4 3.6 36 128-164 100-135 (219)
100 1w36_B RECB, exodeoxyribonucle 68.1 4.5 0.00015 40.4 4.5 40 129-169 377-418 (1180)
101 4f92_B U5 small nuclear ribonu 65.7 19 0.00064 37.6 8.6 83 38-141 134-219 (1724)
102 2j9r_A Thymidine kinase; TK1, 61.8 6.5 0.00022 31.7 3.6 36 129-165 101-136 (214)
103 1g5t_A COB(I)alamin adenosyltr 60.3 11 0.00038 29.9 4.6 40 126-166 117-162 (196)
104 3jux_A Protein translocase sub 60.0 42 0.0015 32.3 9.3 33 21-53 99-131 (822)
105 2zpa_A Uncharacterized protein 58.9 8.7 0.0003 36.2 4.4 39 128-170 254-292 (671)
106 2orv_A Thymidine kinase; TP4A 52.7 11 0.00039 30.7 3.6 35 129-166 90-125 (234)
107 1w4r_A Thymidine kinase; type 50.5 12 0.00041 29.7 3.3 34 129-164 91-124 (195)
108 2gno_A DNA polymerase III, gam 43.0 12 0.0004 31.4 2.3 49 128-176 81-132 (305)
109 2r2a_A Uncharacterized protein 35.3 36 0.0012 26.5 3.9 40 128-167 86-133 (199)
110 1t5i_A C_terminal domain of A 33.9 64 0.0022 23.9 5.1 34 27-60 20-53 (172)
111 2jgn_A DBX, DDX3, ATP-dependen 33.8 1.5E+02 0.005 22.2 9.1 34 27-60 34-68 (185)
112 2i3b_A HCR-ntpase, human cance 31.4 29 0.00098 26.8 2.7 26 128-153 104-131 (189)
113 1fuk_A Eukaryotic initiation f 31.4 69 0.0024 23.3 4.8 34 27-60 19-52 (165)
114 3sqw_A ATP-dependent RNA helic 30.6 1.9E+02 0.0064 25.8 8.4 93 25-140 274-370 (579)
115 2rb4_A ATP-dependent RNA helic 29.2 84 0.0029 23.1 5.0 35 26-60 22-56 (175)
116 1o5o_A Uracil phosphoribosyltr 28.7 52 0.0018 26.4 3.8 42 21-65 148-189 (221)
117 1yks_A Genome polyprotein [con 28.4 68 0.0023 27.8 4.9 38 21-60 19-59 (440)
118 2hjv_A ATP-dependent RNA helic 27.8 73 0.0025 23.2 4.4 34 27-60 24-57 (163)
119 3eaq_A Heat resistant RNA depe 26.0 78 0.0027 24.3 4.4 35 27-61 20-54 (212)
120 1a5t_A Delta prime, HOLB; zinc 25.8 42 0.0014 27.9 3.0 49 128-176 107-158 (334)
121 3i5x_A ATP-dependent RNA helic 25.5 2.6E+02 0.009 24.4 8.4 93 25-140 325-421 (563)
122 4a15_A XPD helicase, ATP-depen 24.5 1E+02 0.0035 28.3 5.5 39 20-60 32-73 (620)
123 1sxj_E Activator 1 40 kDa subu 24.3 71 0.0024 26.2 4.1 47 129-176 134-184 (354)
124 3oon_A Outer membrane protein 24.1 66 0.0023 22.6 3.4 38 12-49 22-59 (123)
125 3td3_A Outer membrane protein 22.0 83 0.0028 22.1 3.6 37 13-49 20-56 (123)
126 2hqs_H Peptidoglycan-associate 21.9 81 0.0028 22.1 3.5 36 14-49 13-48 (118)
127 2eyq_A TRCF, transcription-rep 21.9 2.5E+02 0.0087 27.8 8.1 94 24-142 800-895 (1151)
128 1b4b_A Arginine repressor; cor 20.5 85 0.0029 20.3 3.0 45 16-60 19-69 (71)
129 2e55_A Uracil phosphoribosyltr 20.2 55 0.0019 25.9 2.4 42 21-65 133-174 (208)
130 1oyw_A RECQ helicase, ATP-depe 20.2 4.5E+02 0.015 23.1 10.4 34 27-60 225-258 (523)
131 3u4q_B ATP-dependent helicase/ 20.0 69 0.0023 31.7 3.5 43 19-63 13-56 (1166)
No 1
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=99.97 E-value=1.1e-31 Score=253.39 Aligned_cols=165 Identities=25% Similarity=0.281 Sum_probs=125.5
Q ss_pred CchhH--HHHHHHHHHHHcCCCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhcccccc-----
Q 037641 19 SKTGL--VVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYE----- 91 (208)
Q Consensus 19 ~~t~~--Tive~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~----- 91 (208)
.+||| ||+++|.++++. +.+||||||||.|||++++||.+. +.+++|+|.+.|.. +.+..+++..
T Consensus 214 PGTGKT~ti~~~I~~l~~~--~~~ILv~a~TN~AvD~i~erL~~~--~~~ilRlG~~~r~~----~~~~~~~l~~~~~~~ 285 (646)
T 4b3f_X 214 PGTGKTTTVVEIILQAVKQ--GLKVLCCAPSNIAVDNLVERLALC--KQRILRLGHPARLL----ESIQQHSLDAVLARS 285 (646)
T ss_dssp TTSCHHHHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHHHHT--TCCEEECSCCSSCC----HHHHTTBHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhC--CCeEEEEcCchHHHHHHHHHHHhc--CCceEEecchhhhh----hhhhhhhHHHHHhhc
Confidence 34665 689999999986 679999999999999999999863 56899999887632 2222111100
Q ss_pred ------------------C---------CCccCc---------------chHHHhccCcEEEEcccccchhhc-CCCCCC
Q 037641 92 ------------------G---------GECFQL---------------PSLQELMRFRVIFSTFTSSFRLHN-EGIPAG 128 (208)
Q Consensus 92 ------------------~---------~~~~~~---------------~~~~~l~~~~Vv~~T~~~a~~l~~-~~~~~~ 128 (208)
. ...+.. ...+.+..++||++||.+++.... ..+...
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~vv~~t~~~a~~~~~~~~~~~~ 365 (646)
T 4b3f_X 286 DSAQIVADIRKDIDQVFVKNKKTQDKREKSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPES 365 (646)
T ss_dssp TCSSTHHHHHHHHTTSSTTTTC------CCSSHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEETTTTCSSSGGGGSCTT
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeeehhhhhhhhHHHhhhhc
Confidence 0 000000 001236789999999998875321 124556
Q ss_pred CCcEEEEecCCCCCchhhhHHHhhcccCCceEEEEcCCCCCCcceechHHhhCCCCccHHHHHHcCC
Q 037641 129 HFSHIFLLDASSATEPETMIALTNLANEHTTVILTGTPNNRTSWVRSDIARKNGLRVSHFERLHATK 195 (208)
Q Consensus 129 ~Fd~vIIDEAsQa~Epe~liPL~~l~~~~~~vVLvGD~~QL~P~V~s~~a~~~gl~~SLfeRL~~~~ 195 (208)
.||+||||||+|++||++|+||. +++++||||||+||||+|.+..+...|++.|+||||.+.+
T Consensus 366 ~Fd~vIIDEAsQ~~e~~~lipL~----~~~~~ILVGD~~QLpP~v~~~~a~~~gl~~SlferL~~~~ 428 (646)
T 4b3f_X 366 YFDVVVIDECAQALEASCWIPLL----KARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEY 428 (646)
T ss_dssp CCSEEEETTGGGSCHHHHTTTGG----GSSEEEEEECTTSCCCCCSCHHHHHTTTTCCHHHHHHHHH
T ss_pred cCCEEEEcCccccchHHHHhhcc----ccceEEEcCCccccCceecchhhhhccccchHHHHHHHhc
Confidence 89999999999999999999998 4689999999999999999999999999999999998653
No 2
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=99.94 E-value=3.2e-26 Score=215.47 Aligned_cols=166 Identities=27% Similarity=0.303 Sum_probs=120.9
Q ss_pred chhH--HHHHHHHHHHHcCCCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCC-------chh------
Q 037641 20 KTGL--VVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVP-------VDI------ 84 (208)
Q Consensus 20 ~t~~--Tive~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~-------~~l------ 84 (208)
+||+ |+++++.++++. ++.+||+|||||.|+|++.+|+.+. +..++|++..+|+.-..+ ..+
T Consensus 205 GTGKT~~~~~~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~--~~~~~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~ 281 (624)
T 2gk6_A 205 GTGKTVTSATIVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT--GLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSM 281 (624)
T ss_dssp TSCHHHHHHHHHHHHHTS-SSCCEEEEESSHHHHHHHHHHHHTT--TCCEEECCCTGGGSCCCTTTTTBHHHHHTSCSSC
T ss_pred CCCHHHHHHHHHHHHHHc-CCCeEEEEeCcHHHHHHHHHHHHhc--CCeEEeeccccchhhccchhhhhHHHHHHhccch
Confidence 4665 467788877764 5789999999999999999999863 457899998766321100 000
Q ss_pred ---hcccccc-CCCc--------cCc----chHHHhccCcEEEEcccccchhhcCCCCCCCCcEEEEecCCCCCchhhhH
Q 037641 85 ---LPLCLYE-GGEC--------FQL----PSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDASSATEPETMI 148 (208)
Q Consensus 85 ---~~~~~~~-~~~~--------~~~----~~~~~l~~~~Vv~~T~~~a~~l~~~~~~~~~Fd~vIIDEAsQa~Epe~li 148 (208)
..+.... .... |.. ...+.+..++||++||++++... +....||+||||||+|++||++|+
T Consensus 282 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~~~~~---l~~~~fd~viIDEAsQ~~e~~~li 358 (624)
T 2gk6_A 282 PELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPR---LAKMQFRSILIDESTQATEPECMV 358 (624)
T ss_dssp HHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGGGCGG---GTTCCCSEEEETTGGGSCHHHHHH
T ss_pred HHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhhcchh---hhcCCCCEEEEecccccCcHHHHH
Confidence 0000000 0000 100 01233678999999999887432 345689999999999999999999
Q ss_pred HHhhcccCCceEEEEcCCCCCCcceechHHhhCCCCccHHHHHHcC
Q 037641 149 ALTNLANEHTTVILTGTPNNRTSWVRSDIARKNGLRVSHFERLHAT 194 (208)
Q Consensus 149 PL~~l~~~~~~vVLvGD~~QL~P~V~s~~a~~~gl~~SLfeRL~~~ 194 (208)
|+.. ..+++||+|||+||||++.+..+...|++.|+||||.+.
T Consensus 359 ~l~~---~~~~~ilvGD~~QL~p~v~~~~~~~~gl~~Slferl~~~ 401 (624)
T 2gk6_A 359 PVVL---GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL 401 (624)
T ss_dssp HHTT---TBSEEEEEECTTSCCCCCSCHHHHHHTTTSCHHHHHHHT
T ss_pred HHHh---cCCeEEEecChhccCCeeecHHHHHcCCchhHHHHHHhc
Confidence 9882 358999999999999999999888899999999999864
No 3
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=99.92 E-value=6.8e-25 Score=211.73 Aligned_cols=166 Identities=27% Similarity=0.297 Sum_probs=121.3
Q ss_pred chhH--HHHHHHHHHHHcCCCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCch---hh---------
Q 037641 20 KTGL--VVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVD---IL--------- 85 (208)
Q Consensus 20 ~t~~--Tive~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~---l~--------- 85 (208)
+||+ |+++++.++++. ++.+||+|||||.|+|++.+++.+. +..++|+|+..|+.-..+-. +.
T Consensus 381 GTGKT~ti~~~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~--g~~vvRlg~~~r~~i~~~~~~~tlh~~~~~~~~~ 457 (800)
T 2wjy_A 381 GTGKTVTSATIVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT--GLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSM 457 (800)
T ss_dssp TSCHHHHHHHHHHHHHTT-CSSCEEEEESSHHHHHHHHHHHHTT--TCCEEECCCGGGGGCCCTTGGGBHHHHHHTCTTC
T ss_pred CCCHHHHHHHHHHHHHHc-CCCcEEEEcCcHHHHHHHHHHHHHh--CcceEeecccchhhhcchhhhhhHHHHHHcCccH
Confidence 4565 467777777754 5789999999999999999999863 45789999876632110000 00
Q ss_pred ----cccccc-CCCccCc------------chHHHhccCcEEEEcccccchhhcCCCCCCCCcEEEEecCCCCCchhhhH
Q 037641 86 ----PLCLYE-GGECFQL------------PSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDASSATEPETMI 148 (208)
Q Consensus 86 ----~~~~~~-~~~~~~~------------~~~~~l~~~~Vv~~T~~~a~~l~~~~~~~~~Fd~vIIDEAsQa~Epe~li 148 (208)
.+.... ....+.. ...+.+..++||++||++++.. .+....||+||||||+|++||++|+
T Consensus 458 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~~---~l~~~~fd~viIDEAsQ~~e~~~li 534 (800)
T 2wjy_A 458 PELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDP---RLAKMQFRSILIDESTQATEPECMV 534 (800)
T ss_dssp HHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETGGGGCT---TTTTCCCSEEEETTGGGSCHHHHHH
T ss_pred HHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCEEEEchhhhCCh---hhhcCCCCEEEEECCCCCCcHHHHH
Confidence 000000 0011110 0122367899999999988742 3445689999999999999999999
Q ss_pred HHhhcccCCceEEEEcCCCCCCcceechHHhhCCCCccHHHHHHcC
Q 037641 149 ALTNLANEHTTVILTGTPNNRTSWVRSDIARKNGLRVSHFERLHAT 194 (208)
Q Consensus 149 PL~~l~~~~~~vVLvGD~~QL~P~V~s~~a~~~gl~~SLfeRL~~~ 194 (208)
|+.. ..+++||+|||+||||++.+..+...|++.|+||||.+.
T Consensus 535 ~l~~---~~~~~ilvGD~~QLpPvv~s~~a~~~gl~~SlFerL~~~ 577 (800)
T 2wjy_A 535 PVVL---GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL 577 (800)
T ss_dssp HHTT---TBSEEEEEECTTSCCCCCCCHHHHHTTTTSCHHHHHHHT
T ss_pred HHHh---cCCeEEEecccccCCCeecchhhhhcCcchHHHHHHHhC
Confidence 9882 468999999999999999999988999999999999864
No 4
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2e-24 Score=208.62 Aligned_cols=163 Identities=28% Similarity=0.325 Sum_probs=120.9
Q ss_pred chhH--HHHHHHHHHHHcCCCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccc---c--C
Q 037641 20 KTGL--VVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLY---E--G 92 (208)
Q Consensus 20 ~t~~--Tive~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~---~--~ 92 (208)
+||+ |++++|.++++. ++.+||||||||.|+|++.+||.+. +..++|++...|.. +...+..++.. . .
T Consensus 385 GTGKT~~i~~~i~~l~~~-~~~~ILv~a~tn~A~d~l~~rL~~~--g~~ilR~g~~~r~~--i~~~~~~~tl~~~~~~~~ 459 (802)
T 2xzl_A 385 GTGKTVTSATIVYHLSKI-HKDRILVCAPSNVAVDHLAAKLRDL--GLKVVRLTAKSRED--VESSVSNLALHNLVGRGA 459 (802)
T ss_dssp TSSHHHHHHHHHHHHHHH-HCCCEEEEESSHHHHHHHHHHHHHT--TCCEEECCCGGGTT--SCCTTGGGBHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhC-CCCeEEEEcCcHHHHHHHHHHHHhh--CccEEeecccchhh--hcchhhhhhHHHHHHhhc
Confidence 3555 477888888764 4679999999999999999999873 45799999876631 22111111100 0 0
Q ss_pred C-------------Cc--------cCc----chHHHhccCcEEEEcccccchhhcCCCCCCCCcEEEEecCCCCCchhhh
Q 037641 93 G-------------EC--------FQL----PSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDASSATEPETM 147 (208)
Q Consensus 93 ~-------------~~--------~~~----~~~~~l~~~~Vv~~T~~~a~~l~~~~~~~~~Fd~vIIDEAsQa~Epe~l 147 (208)
. .. |.. .....+..++||++||.+++.. .+.. .||+||||||+|++||+.|
T Consensus 460 ~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~~---~L~~-~fd~viIDEA~q~~e~~~l 535 (802)
T 2xzl_A 460 KGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGDK---RLDT-KFRTVLIDESTQASEPECL 535 (802)
T ss_dssp CTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTGGGCT---TCCS-CCSEEEETTGGGSCHHHHH
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhhcChH---HHhc-cCCEEEEECccccchHHHH
Confidence 0 00 100 0123367899999999987732 3333 8999999999999999999
Q ss_pred HHHhhcccCCceEEEEcCCCCCCcceechHHhhCCCCccHHHHHHcC
Q 037641 148 IALTNLANEHTTVILTGTPNNRTSWVRSDIARKNGLRVSHFERLHAT 194 (208)
Q Consensus 148 iPL~~l~~~~~~vVLvGD~~QL~P~V~s~~a~~~gl~~SLfeRL~~~ 194 (208)
+|+.. ..+++||+|||+||||++.+..+...|++.|+||||...
T Consensus 536 i~l~~---~~~~lilvGD~~QL~pvv~s~~a~~~gl~~slferl~~~ 579 (802)
T 2xzl_A 536 IPIVK---GAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLISL 579 (802)
T ss_dssp HHHTT---TBSEEEEEECTTSCCCCCCCHHHHHTTTTCCHHHHHHHT
T ss_pred HHHHh---CCCEEEEEeCccccCCeechhhhhhcCCchhHHHHHHhc
Confidence 99872 468999999999999999999998999999999999864
No 5
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.29 E-value=8.5e-12 Score=117.06 Aligned_cols=151 Identities=21% Similarity=0.267 Sum_probs=83.8
Q ss_pred CCchhHH--HHHHHHHHHHc--CCCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCC
Q 037641 18 LSKTGLV--VREAVLEIYKR--SSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGG 93 (208)
Q Consensus 18 ~~~t~~T--ive~i~ql~~~--~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~ 93 (208)
-.+|||| +..++..+... .++.+|++||||+.|++++.+.+........ +....+ ..++......
T Consensus 172 ~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~---l~~~~~--~~~~~~~~Ti------ 240 (608)
T 1w36_D 172 GPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLP---LTDEQK--KRIPEDASTL------ 240 (608)
T ss_dssp CTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS---CCSCCC--CSCSCCCBTT------
T ss_pred CCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCC---CCHHHH--hccchhhhhh------
Confidence 3458887 65666555542 3467999999999999999888754210000 000000 0111100000
Q ss_pred CccCcchHHHhccCcEEEEcccccchhhcCCCCCCCCcEEEEecCCCCCchhhhHHHhhcccCCceEEEEcCCCCCCcce
Q 037641 94 ECFQLPSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDASSATEPETMIALTNLANEHTTVILTGTPNNRTSWV 173 (208)
Q Consensus 94 ~~~~~~~~~~l~~~~Vv~~T~~~a~~l~~~~~~~~~Fd~vIIDEAsQa~Epe~liPL~~l~~~~~~vVLvGD~~QL~P~V 173 (208)
++++..+... ..+.........+|++|||||+++.++.. -.|....+...++||+||+.||||+.
T Consensus 241 -------------h~ll~~~~~~-~~~~~~~~~~l~~d~lIIDEAsml~~~~~-~~Ll~~l~~~~~liLvGD~~QL~~V~ 305 (608)
T 1w36_D 241 -------------HRLLGAQPGS-QRLRHHAGNPLHLDVLVVDEASMIDLPMM-SRLIDALPDHARVIFLGDRDQLASVE 305 (608)
T ss_dssp -------------TSCC------------CTTSCCSCSEEEECSGGGCBHHHH-HHHHHTCCTTCEEEEEECTTSGGGTS
T ss_pred -------------HhhhccCCCc-hHHHhccCCCCCCCEEEEechhhCCHHHH-HHHHHhCCCCCEEEEEcchhhcCCCC
Confidence 0000000000 00000011123799999999998886632 22222224578999999999999997
Q ss_pred ech----HH--hhCCCCccHHHHHHcC
Q 037641 174 RSD----IA--RKNGLRVSHFERLHAT 194 (208)
Q Consensus 174 ~s~----~a--~~~gl~~SLfeRL~~~ 194 (208)
... .. .+.|++.++|++|.+.
T Consensus 306 ~G~vl~dl~~~~~~g~~~~~~~~l~~~ 332 (608)
T 1w36_D 306 AGAVLGDICAYANAGFTAERARQLSRL 332 (608)
T ss_dssp TTBCHHHHGGGGTTCCCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHhccccHHHHHHHHHh
Confidence 643 22 2468999999998753
No 6
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.89 E-value=4e-09 Score=98.41 Aligned_cols=111 Identities=15% Similarity=0.225 Sum_probs=66.1
Q ss_pred CchhHH-HHHHHHHHHHcCCCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCCCccC
Q 037641 19 SKTGLV-VREAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECFQ 97 (208)
Q Consensus 19 ~~t~~T-ive~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~ 97 (208)
.+|||| ++..+...+.. .+.+|++||||+.|++.+.+++... .. .+..+..+.. +.|.
T Consensus 213 pGTGKTt~i~~l~~~l~~-~g~~Vl~~ApT~~Aa~~L~e~~~~~--------a~-----------Tih~ll~~~~-~~~~ 271 (574)
T 3e1s_A 213 PGTGKSTTTKAVADLAES-LGLEVGLCAPTGKAARRLGEVTGRT--------AS-----------TVHRLLGYGP-QGFR 271 (574)
T ss_dssp TTSCHHHHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHHTSC--------EE-----------EHHHHTTEET-TEES
T ss_pred CCCCHHHHHHHHHHHHHh-cCCeEEEecCcHHHHHHhHhhhccc--------HH-----------HHHHHHcCCc-chhh
Confidence 346664 34455555544 4789999999999999988765310 00 0111110000 0000
Q ss_pred cchHHHhccCcEEEEcccccchhhcCCCCCCCCcEEEEecCCCCCchhhhHHHhhcccCCceEEEEcCCCCCCcceec
Q 037641 98 LPSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDASSATEPETMIALTNLANEHTTVILTGTPNNRTSWVRS 175 (208)
Q Consensus 98 ~~~~~~l~~~~Vv~~T~~~a~~l~~~~~~~~~Fd~vIIDEAsQa~Epe~liPL~~l~~~~~~vVLvGD~~QL~P~V~s 175 (208)
...-....+|+||||||+++..+.. -.|........++||+||+.||||+...
T Consensus 272 ------------------------~~~~~~~~~dvlIIDEasml~~~~~-~~Ll~~~~~~~~lilvGD~~QL~~v~~g 324 (574)
T 3e1s_A 272 ------------------------HNHLEPAPYDLLIVDEVSMMGDALM-LSLLAAVPPGARVLLVGDTDQLPPVDAG 324 (574)
T ss_dssp ------------------------CSSSSCCSCSEEEECCGGGCCHHHH-HHHHTTSCTTCEEEEEECTTSCCCSSSC
T ss_pred ------------------------hhhcccccCCEEEEcCccCCCHHHH-HHHHHhCcCCCEEEEEecccccCCccCC
Confidence 0001123689999999999886533 3333233356899999999999998553
No 7
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.83 E-value=9.3e-09 Score=92.95 Aligned_cols=48 Identities=10% Similarity=0.007 Sum_probs=36.0
Q ss_pred CCCcEEEEecCCCCCchhhhHHHhhcccCCceEEEEcCCCCCCcceech
Q 037641 128 GHFSHIFLLDASSATEPETMIALTNLANEHTTVILTGTPNNRTSWVRSD 176 (208)
Q Consensus 128 ~~Fd~vIIDEAsQa~Epe~liPL~~l~~~~~~vVLvGD~~QL~P~V~s~ 176 (208)
..++++|||||++.. +..+-.|........+++++||+.||+|+....
T Consensus 127 ~~~~~iiiDE~~~~~-~~~~~~l~~~~~~~~~~~~vGD~~Ql~~v~~g~ 174 (459)
T 3upu_A 127 AKCRVLICDEVSMYD-RKLFKILLSTIPPWCTIIGIGDNKQIRPVDPGE 174 (459)
T ss_dssp SSCSEEEESCGGGCC-HHHHHHHHHHSCTTCEEEEEECTTSCCCCCTTS
T ss_pred cCCCEEEEECchhCC-HHHHHHHHHhccCCCEEEEECCHHHcCCccCCc
Confidence 469999999999876 444444443333568999999999999987643
No 8
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=98.51 E-value=1.5e-07 Score=85.24 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=35.2
Q ss_pred CCcEEEEecCCCCCchhhhHHHhhcccCCceEEEEcCCCCCCcceech
Q 037641 129 HFSHIFLLDASSATEPETMIALTNLANEHTTVILTGTPNNRTSWVRSD 176 (208)
Q Consensus 129 ~Fd~vIIDEAsQa~Epe~liPL~~l~~~~~~vVLvGD~~QL~P~V~s~ 176 (208)
.+|++|||||+++. +..+..+..+. +.+++||+||++||||+-.++
T Consensus 234 ~~d~liiDE~sm~~-~~~l~~l~~~~-~~~~vilvGD~~Qlp~v~~~~ 279 (446)
T 3vkw_A 234 QFKRLFIDEGLMLH-TGCVNFLVEMS-LCDIAYVYGDTQQIPYINRVT 279 (446)
T ss_dssp CCSEEEEETGGGSC-HHHHHHHHHHT-TCSEEEEEECTTSCCCCCCST
T ss_pred cCCEEEEeCcccCC-HHHHHHHHHhC-CCCEEEEecCcccccCcccCC
Confidence 58999999999886 44443443233 459999999999999997754
No 9
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.06 E-value=2.8e-06 Score=78.98 Aligned_cols=43 Identities=12% Similarity=0.160 Sum_probs=34.2
Q ss_pred hhH--HHHHHHHHHHHcC--CCCeEEEECCChHHHHHHHHHhhhhCC
Q 037641 21 TGL--VVREAVLEIYKRS--SKCRILVCAPINRTGDVLMRSLKKKIP 63 (208)
Q Consensus 21 t~~--Tive~i~ql~~~~--~~~rILV~A~SN~AvD~l~~rL~~~~~ 63 (208)
||| |+++.|.+++... +..+||++++||.|++++-+|+.+.++
T Consensus 33 sGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 33 SGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp SCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 454 4678888888752 447999999999999999999987543
No 10
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=97.50 E-value=0.0007 Score=53.24 Aligned_cols=104 Identities=16% Similarity=0.111 Sum_probs=60.1
Q ss_pred chhHHHHHHHH--HHHH----cCCCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCC
Q 037641 20 KTGLVVREAVL--EIYK----RSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGG 93 (208)
Q Consensus 20 ~t~~Tive~i~--ql~~----~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~ 93 (208)
++|+|++-++. +.+. ..++.++||.+||..-++.+.+++.+..+...+..+.. +
T Consensus 48 GsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~--------------------~ 107 (207)
T 2gxq_A 48 GTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYG--------------------G 107 (207)
T ss_dssp TSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECS--------------------S
T ss_pred CChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEEC--------------------C
Confidence 35677754332 3222 13467999999999999999999887543322221111 0
Q ss_pred CccCcchHHHhccCcEEEEcccccchhh-cCCCCCCCCcEEEEecCCCCCc
Q 037641 94 ECFQLPSLQELMRFRVIFSTFTSSFRLH-NEGIPAGHFSHIFLLDASSATE 143 (208)
Q Consensus 94 ~~~~~~~~~~l~~~~Vv~~T~~~a~~l~-~~~~~~~~Fd~vIIDEAsQa~E 143 (208)
.............++|+++|......+. ...+....++++|||||-.+.+
T Consensus 108 ~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~ 158 (207)
T 2gxq_A 108 TGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLS 158 (207)
T ss_dssp SCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHH
T ss_pred CChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhc
Confidence 0000001112346899999976543221 2223345799999999986543
No 11
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=97.18 E-value=0.00087 Score=60.13 Aligned_cols=124 Identities=21% Similarity=0.261 Sum_probs=73.8
Q ss_pred CCCCchhHHHHHHHHHHHHcCCCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCCCc
Q 037641 16 DNLSKTGLVVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGEC 95 (208)
Q Consensus 16 ~~~~~t~~Tive~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~ 95 (208)
+++|||=.++ .++..+....+..++||.+|+. -+++..+.+.+..+...+..+... + .
T Consensus 65 ~GlGKT~~ai-~~i~~~~~~~~~~~~LIv~P~~-l~~qw~~e~~~~~~~~~v~~~~g~-~------------------~- 122 (500)
T 1z63_A 65 MGLGKTLQTI-AVFSDAKKENELTPSLVICPLS-VLKNWEEELSKFAPHLRFAVFHED-R------------------S- 122 (500)
T ss_dssp TTSCHHHHHH-HHHHHHHHTTCCSSEEEEECST-THHHHHHHHHHHCTTSCEEECSSS-T------------------T-
T ss_pred CCCcHHHHHH-HHHHHHHhcCCCCCEEEEccHH-HHHHHHHHHHHHCCCceEEEEecC-c------------------h-
Confidence 3444443322 3455555555668999999965 678888888876543333221110 0 0
Q ss_pred cCcchHHHhccCcEEEEcccccchhhcCCCCCCCCcEEEEecCCCCCchhh--hHHHhhcccCCceEEEEcCCCCC
Q 037641 96 FQLPSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDASSATEPET--MIALTNLANEHTTVILTGTPNNR 169 (208)
Q Consensus 96 ~~~~~~~~l~~~~Vv~~T~~~a~~l~~~~~~~~~Fd~vIIDEAsQa~Epe~--liPL~~l~~~~~~vVLvGD~~QL 169 (208)
......+.|+++|......... +....|++||+|||-.+..+.+ .-.+..+. ...++.|-|=|.|-
T Consensus 123 -----~~~~~~~~ivi~t~~~l~~~~~--l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~-~~~~l~LTaTP~~n 190 (500)
T 1z63_A 123 -----KIKLEDYDIILTTYAVLLRDTR--LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELK-SKYRIALTGTPIEN 190 (500)
T ss_dssp -----SCCGGGSSEEEEEHHHHTTCHH--HHTCCEEEEEEETGGGGSCTTSHHHHHHHTSC-EEEEEEECSSCSTT
T ss_pred -----hccccCCcEEEeeHHHHhccch--hcCCCcCEEEEeCccccCCHhHHHHHHHHhhc-cCcEEEEecCCCCC
Confidence 0112457899999875443211 2345799999999999876653 22233222 34679999998774
No 12
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.00061 Score=65.47 Aligned_cols=144 Identities=15% Similarity=0.197 Sum_probs=81.3
Q ss_pred CCCCchhHHHHHHHHHHH-HcCCCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCCC
Q 037641 16 DNLSKTGLVVREAVLEIY-KRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGE 94 (208)
Q Consensus 16 ~~~~~t~~Tive~i~ql~-~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~ 94 (208)
+++|||=.++. ++..++ ......++||.+| ..-+.+....+.+..+...++.+....+. ...+..+..+....
T Consensus 264 mGlGKT~~ai~-~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~v~~~~g~~~~----r~~~~~~~~~~~~~ 337 (800)
T 3mwy_W 264 MGLGKTVQTVA-FISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLNCICYMGNQKS----RDTIREYEFYTNPR 337 (800)
T ss_dssp TTSSTTHHHHH-HHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTCCEEECCCSSHH----HHHHHHHHSCSCC-
T ss_pred CCcchHHHHHH-HHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCceEEEEeCCHHH----HHHHHHHHhhcccc
Confidence 56777766543 333333 3445678999999 45588888888877665555544332110 01122222111000
Q ss_pred ccCcchHHHhccCcEEEEcccccchhhcCCCCCCCCcEEEEecCCCCCchhh--hHHHhhcccCCceEEEEcCCCCCCc
Q 037641 95 CFQLPSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDASSATEPET--MIALTNLANEHTTVILTGTPNNRTS 171 (208)
Q Consensus 95 ~~~~~~~~~l~~~~Vv~~T~~~a~~l~~~~~~~~~Fd~vIIDEAsQa~Epe~--liPL~~l~~~~~~vVLvGD~~QL~P 171 (208)
........+.|+++|..+...... .+....|++||||||-.+.-+.+ .-.+..+ ....++.|-|=|-|-.+
T Consensus 338 ----~~~~~~~~~dvvitTy~~l~~~~~-~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l-~~~~rl~LTgTPiqN~l 410 (800)
T 3mwy_W 338 ----AKGKKTMKFNVLLTTYEYILKDRA-ELGSIKWQFMAVDEAHRLKNAESSLYESLNSF-KVANRMLITGTPLQNNI 410 (800)
T ss_dssp --------CCCCCSEEEECTTHHHHTHH-HHHTSEEEEEEETTGGGGCCSSSHHHHHHTTS-EEEEEEEECSCCCSSCS
T ss_pred ----ccccccccCCEEEecHHHHHhhHH-HHhcCCcceeehhhhhhhcCchhHHHHHHHHh-hhccEEEeeCCcCCCCH
Confidence 001223467899999887653211 12234799999999999855443 2333323 23478999999976543
No 13
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=97.06 E-value=0.0014 Score=55.39 Aligned_cols=107 Identities=11% Similarity=0.165 Sum_probs=63.5
Q ss_pred chhHHHHHH--HHHHHHcCCCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCCCccC
Q 037641 20 KTGLVVREA--VLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECFQ 97 (208)
Q Consensus 20 ~t~~Tive~--i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~ 97 (208)
++|+|++-+ +.+.+...++.++||.+|+..-++.+.+++.+..+... +++... .++.. .
T Consensus 54 GsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~v~~~-----------------~~~~~-~ 114 (367)
T 1hv8_A 54 GSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKN-LKIAKI-----------------YGGKA-I 114 (367)
T ss_dssp SSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSC-CCEEEE-----------------CTTSC-H
T ss_pred CChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCC-ceEEEE-----------------ECCcc-h
Confidence 456777643 34444444678999999999999999999887532211 111110 00000 0
Q ss_pred cchHHHhccCcEEEEcccccchhhc-CCCCCCCCcEEEEecCCCCCchh
Q 037641 98 LPSLQELMRFRVIFSTFTSSFRLHN-EGIPAGHFSHIFLLDASSATEPE 145 (208)
Q Consensus 98 ~~~~~~l~~~~Vv~~T~~~a~~l~~-~~~~~~~Fd~vIIDEAsQa~Epe 145 (208)
....+.+.+.+|+++|......... ..+....|++||||||-...+..
T Consensus 115 ~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~ 163 (367)
T 1hv8_A 115 YPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMG 163 (367)
T ss_dssp HHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTT
T ss_pred HHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhc
Confidence 1123345578999999765433222 12334578999999998765543
No 14
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.04 E-value=0.0019 Score=51.53 Aligned_cols=103 Identities=11% Similarity=0.047 Sum_probs=57.4
Q ss_pred chhHHHHHHHH--H-HHHcCCCCeEEEECCChHHHHHHHHHhhhhCCC--CCeEEEeccccCCCCCCchhhccccccCCC
Q 037641 20 KTGLVVREAVL--E-IYKRSSKCRILVCAPINRTGDVLMRSLKKKIPK--SDMFRANAAFREVDGVPVDILPLCLYEGGE 94 (208)
Q Consensus 20 ~t~~Tive~i~--q-l~~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~--~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~ 94 (208)
++|+|++-++. + +....++.++||.+||..-++.+.+++.+.... ..+..+....
T Consensus 61 GsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~-------------------- 120 (224)
T 1qde_A 61 GTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGT-------------------- 120 (224)
T ss_dssp TSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------------------
T ss_pred CCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCc--------------------
Confidence 35677663332 2 222334679999999999999998888764321 1111111100
Q ss_pred ccCcchHHHhccCcEEEEcccccchhh-cCCCCCCCCcEEEEecCCCCCc
Q 037641 95 CFQLPSLQELMRFRVIFSTFTSSFRLH-NEGIPAGHFSHIFLLDASSATE 143 (208)
Q Consensus 95 ~~~~~~~~~l~~~~Vv~~T~~~a~~l~-~~~~~~~~Fd~vIIDEAsQa~E 143 (208)
. .....+.+.+++|+++|........ ...+....++++|||||-...+
T Consensus 121 ~-~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~ 169 (224)
T 1qde_A 121 S-FVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLS 169 (224)
T ss_dssp ---------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHH
T ss_pred c-hHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhh
Confidence 0 0001122345899999976543322 2223345789999999987544
No 15
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=97.03 E-value=0.0046 Score=53.63 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=65.4
Q ss_pred CCCeEEEECCChHHHHHHHHHhhhhCCC--CCeEEEeccccCCCCCCchhhccccccCCCccCcchHHHhccCcEEEEcc
Q 037641 37 SKCRILVCAPINRTGDVLMRSLKKKIPK--SDMFRANAAFREVDGVPVDILPLCLYEGGECFQLPSLQELMRFRVIFSTF 114 (208)
Q Consensus 37 ~~~rILV~A~SN~AvD~l~~rL~~~~~~--~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~Vv~~T~ 114 (208)
++.++||.+|+..-++++..++.+..+. ..+..+.. +.. .....+...+.+|+++|.
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g--------------------~~~-~~~~~~~~~~~~ivv~T~ 109 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTG--------------------EKS-PEERSKAWARAKVIVATP 109 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECS--------------------CSC-HHHHHHHHHHCSEEEECH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeC--------------------Ccc-hhhhhhhccCCCEEEecH
Confidence 5789999999999999999999876421 11111111 000 000112234689999998
Q ss_pred cccchhhc-CCCCCCCCcEEEEecCCCCCchhhhHHHhhc----ccCCceEEEEcCCC
Q 037641 115 TSSFRLHN-EGIPAGHFSHIFLLDASSATEPETMIALTNL----ANEHTTVILTGTPN 167 (208)
Q Consensus 115 ~~a~~l~~-~~~~~~~Fd~vIIDEAsQa~Epe~liPL~~l----~~~~~~vVLvGD~~ 167 (208)
........ ..+....|++||||||-.........-+... .+....+.|-|=|.
T Consensus 110 ~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~ 167 (494)
T 1wp9_A 110 QTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG 167 (494)
T ss_dssp HHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC
T ss_pred HHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecCCC
Confidence 76543222 2234567999999999998754332222211 12345677777665
No 16
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.98 E-value=0.001 Score=52.26 Aligned_cols=105 Identities=10% Similarity=0.066 Sum_probs=51.6
Q ss_pred hhHHHHHH--HHHHHHc----CCCCeEEEECCChHHHHH-HHHHhhhhCCC-CCeEEEeccccCCCCCCchhhccccccC
Q 037641 21 TGLVVREA--VLEIYKR----SSKCRILVCAPINRTGDV-LMRSLKKKIPK-SDMFRANAAFREVDGVPVDILPLCLYEG 92 (208)
Q Consensus 21 t~~Tive~--i~ql~~~----~~~~rILV~A~SN~AvD~-l~~rL~~~~~~-~~i~Rv~~~~r~~~~~~~~l~~~~~~~~ 92 (208)
+|+|++-+ +.+.+.. .++.++||.+|+..-++. +.+.+.+.... ..+..+..
T Consensus 59 sGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g-------------------- 118 (216)
T 3b6e_A 59 SGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSG-------------------- 118 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC--------------------
T ss_pred CCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeC--------------------
Confidence 56777653 3333332 236799999999999888 43444332211 11111111
Q ss_pred CCccCcchHHHhccCcEEEEcccccchhhcCC-------CCCCCCcEEEEecCCCCCchh
Q 037641 93 GECFQLPSLQELMRFRVIFSTFTSSFRLHNEG-------IPAGHFSHIFLLDASSATEPE 145 (208)
Q Consensus 93 ~~~~~~~~~~~l~~~~Vv~~T~~~a~~l~~~~-------~~~~~Fd~vIIDEAsQa~Epe 145 (208)
+..............+|+++|........... +....|++||||||-.+....
T Consensus 119 ~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~ 178 (216)
T 3b6e_A 119 DTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEA 178 (216)
T ss_dssp ---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------
T ss_pred CcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCC
Confidence 00000111122346899999987543322211 223468999999999886543
No 17
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=96.98 E-value=0.0039 Score=49.92 Aligned_cols=87 Identities=10% Similarity=-0.023 Sum_probs=50.4
Q ss_pred CCCeEEEECCChHHHHHHHHHhhhhCC-CCCeEEEeccccCCCCCCchhhccccccCCCccCcchHHHhccCcEEEEccc
Q 037641 37 SKCRILVCAPINRTGDVLMRSLKKKIP-KSDMFRANAAFREVDGVPVDILPLCLYEGGECFQLPSLQELMRFRVIFSTFT 115 (208)
Q Consensus 37 ~~~rILV~A~SN~AvD~l~~rL~~~~~-~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~Vv~~T~~ 115 (208)
.+.++||.+||..-++.+.+++.+... +.....+.. +............+.+|+++|-.
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~iiv~Tp~ 152 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYG--------------------GRNRNGQIEDISKGVDIIIATPG 152 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC--------------------------CHHHHHSCCSEEEECHH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEEC--------------------CCChHHHHHHhcCCCCEEEECHH
Confidence 567899999999999999988876421 111111111 00000001112245799999976
Q ss_pred ccchhhc-CCCCCCCCcEEEEecCCCCCc
Q 037641 116 SSFRLHN-EGIPAGHFSHIFLLDASSATE 143 (208)
Q Consensus 116 ~a~~l~~-~~~~~~~Fd~vIIDEAsQa~E 143 (208)
....+.. ..+....++++|||||-...+
T Consensus 153 ~l~~~~~~~~~~~~~~~~lViDEah~~~~ 181 (228)
T 3iuy_A 153 RLNDLQMNNSVNLRSITYLVIDEADKMLD 181 (228)
T ss_dssp HHHHHHHTTCCCCTTCCEEEECCHHHHHH
T ss_pred HHHHHHHcCCcCcccceEEEEECHHHHhc
Confidence 4433222 223345789999999986553
No 18
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=96.95 E-value=0.0012 Score=53.34 Aligned_cols=107 Identities=15% Similarity=0.140 Sum_probs=60.7
Q ss_pred chhHHHHHHH--H-HHHHcCCCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCCCcc
Q 037641 20 KTGLVVREAV--L-EIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECF 96 (208)
Q Consensus 20 ~t~~Tive~i--~-ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~ 96 (208)
++|+|++-++ + .+....++.++||.+||..-++.+.+++.+......-++++. +.++..
T Consensus 71 GsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~-----------------~~g~~~- 132 (230)
T 2oxc_A 71 GTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHV-----------------FIGGTP- 132 (230)
T ss_dssp TSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEE-----------------ECTTSC-
T ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEE-----------------EeCCCC-
Confidence 3567876432 2 222334567999999999999999988876432110011111 000000
Q ss_pred CcchHHHhccCcEEEEcccccchhhc-CCCCCCCCcEEEEecCCCCCch
Q 037641 97 QLPSLQELMRFRVIFSTFTSSFRLHN-EGIPAGHFSHIFLLDASSATEP 144 (208)
Q Consensus 97 ~~~~~~~l~~~~Vv~~T~~~a~~l~~-~~~~~~~Fd~vIIDEAsQa~Ep 144 (208)
.....+.+.+++|+++|......+.. ..+....++++|||||-...+.
T Consensus 133 ~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~ 181 (230)
T 2oxc_A 133 LSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEE 181 (230)
T ss_dssp HHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHST
T ss_pred HHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcC
Confidence 00112345678999999765433222 1223356899999999876443
No 19
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=96.91 E-value=0.0024 Score=53.14 Aligned_cols=99 Identities=10% Similarity=0.007 Sum_probs=57.6
Q ss_pred hhHHHHHH--HHHHHHcCCCCeEEEECCChHHHHHHHHHhhhhCCC--CCeEEEeccccCCCCCCchhhccccccCCCcc
Q 037641 21 TGLVVREA--VLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPK--SDMFRANAAFREVDGVPVDILPLCLYEGGECF 96 (208)
Q Consensus 21 t~~Tive~--i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~--~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~ 96 (208)
+|+|++-+ +.+.+.. .+.++|+.+||..-+++..+++.+.... ..+..+..... ..
T Consensus 139 sGKT~~~~~~~~~~~~~-~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~-------------------~~ 198 (282)
T 1rif_A 139 AGRSLIQALLARYYLEN-YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGAS-------------------KD 198 (282)
T ss_dssp SCHHHHHHHHHHHHHHH-CSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCS-------------------ST
T ss_pred CCcHHHHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCc-------------------ch
Confidence 44565543 3333333 3459999999999999999999875321 11111111000 00
Q ss_pred CcchHHHhccCcEEEEcccccchhhcCCCCCCCCcEEEEecCCCCCchh
Q 037641 97 QLPSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDASSATEPE 145 (208)
Q Consensus 97 ~~~~~~~l~~~~Vv~~T~~~a~~l~~~~~~~~~Fd~vIIDEAsQa~Epe 145 (208)
.......+|+++|.....+... .....|++||||||-.+..+.
T Consensus 199 ----~~~~~~~~I~v~T~~~l~~~~~--~~~~~~~~vIiDEaH~~~~~~ 241 (282)
T 1rif_A 199 ----DKYKNDAPVVVGTWQTVVKQPK--EWFSQFGMMMNDECHLATGKS 241 (282)
T ss_dssp ----TCCCTTCSEEEECHHHHTTSCG--GGGGGEEEEEEETGGGCCHHH
T ss_pred ----hhhccCCcEEEEchHHHHhhHH--HHHhhCCEEEEECCccCCccc
Confidence 0112457899999864332111 112468999999999988663
No 20
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=96.90 E-value=0.0039 Score=50.18 Aligned_cols=105 Identities=17% Similarity=0.228 Sum_probs=60.0
Q ss_pred chhHHHHHH--HHH-HHHc----CCCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccC
Q 037641 20 KTGLVVREA--VLE-IYKR----SSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEG 92 (208)
Q Consensus 20 ~t~~Tive~--i~q-l~~~----~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~ 92 (208)
++|+|++-. +++ +... .++.++||.+||..-++.+.+++.+...... ++++. ..+
T Consensus 72 GsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~-----------------~~g 133 (236)
T 2pl3_A 72 GSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHD-FSAGL-----------------IIG 133 (236)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSS-CCEEE-----------------ECC
T ss_pred CCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCC-eeEEE-----------------EEC
Confidence 356776543 333 3321 2467999999999999999988876432111 11111 000
Q ss_pred CCccCcchHHHhccCcEEEEcccccchhhc-C-CCCCCCCcEEEEecCCCCCc
Q 037641 93 GECFQLPSLQELMRFRVIFSTFTSSFRLHN-E-GIPAGHFSHIFLLDASSATE 143 (208)
Q Consensus 93 ~~~~~~~~~~~l~~~~Vv~~T~~~a~~l~~-~-~~~~~~Fd~vIIDEAsQa~E 143 (208)
+. ......+.+.+++|+++|......... . .+....++++|||||-.+.+
T Consensus 134 ~~-~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~ 185 (236)
T 2pl3_A 134 GK-DLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILD 185 (236)
T ss_dssp C---CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHH
T ss_pred CC-CHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhc
Confidence 00 001123345678999999765433211 1 23345789999999987654
No 21
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.89 E-value=0.0022 Score=50.31 Aligned_cols=105 Identities=11% Similarity=0.090 Sum_probs=58.6
Q ss_pred chhHHHHHHHHHHH---HcCCCCeEEEECCChHHHHHHHHHhhhhCCC---CCeEEEeccccCCCCCCchhhccccccCC
Q 037641 20 KTGLVVREAVLEIY---KRSSKCRILVCAPINRTGDVLMRSLKKKIPK---SDMFRANAAFREVDGVPVDILPLCLYEGG 93 (208)
Q Consensus 20 ~t~~Tive~i~ql~---~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~---~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~ 93 (208)
++|+|++-.+.-+. ...++.++||.+||..-+..+.+++.+.... ..+..+.. +
T Consensus 50 GsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g--------------------~ 109 (206)
T 1vec_A 50 GTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTG--------------------G 109 (206)
T ss_dssp SSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECS--------------------S
T ss_pred CCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeC--------------------C
Confidence 35567654433222 2234568999999999999988888764321 11111110 0
Q ss_pred CccCcchHHH-hccCcEEEEcccccchhhcC-CCCCCCCcEEEEecCCCCCchh
Q 037641 94 ECFQLPSLQE-LMRFRVIFSTFTSSFRLHNE-GIPAGHFSHIFLLDASSATEPE 145 (208)
Q Consensus 94 ~~~~~~~~~~-l~~~~Vv~~T~~~a~~l~~~-~~~~~~Fd~vIIDEAsQa~Epe 145 (208)
.... ..... -..++|+++|.......... ......++++|||||-...+..
T Consensus 110 ~~~~-~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~ 162 (206)
T 1vec_A 110 TNLR-DDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD 162 (206)
T ss_dssp SCHH-HHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTT
T ss_pred ccHH-HHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhC
Confidence 0000 00111 23578999997654332221 2234578999999998766543
No 22
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=96.84 E-value=0.003 Score=59.19 Aligned_cols=139 Identities=12% Similarity=0.187 Sum_probs=77.2
Q ss_pred CCCCchhHHHHHHHHHHHHcCC-----CCeEEEECCChHHHHHHHHHhhhhCCC-CCeEEEeccccCCCCCCchhhcccc
Q 037641 16 DNLSKTGLVVREAVLEIYKRSS-----KCRILVCAPINRTGDVLMRSLKKKIPK-SDMFRANAAFREVDGVPVDILPLCL 89 (208)
Q Consensus 16 ~~~~~t~~Tive~i~ql~~~~~-----~~rILV~A~SN~AvD~l~~rL~~~~~~-~~i~Rv~~~~r~~~~~~~~l~~~~~ 89 (208)
+++|||=.++ .++..++...+ ..++||++|+ ..+.+....+.+..+. ...+.+....+. .....+..+.
T Consensus 88 mGlGKT~~~i-~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~- 162 (644)
T 1z3i_X 88 MGLGKTLQCI-TLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEVGKWLGGRVQPVAIDGGSKD--EIDSKLVNFI- 162 (644)
T ss_dssp TTSCHHHHHH-HHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHHHHHHGGGCCEEEECSSCHH--HHHHHHHHHH-
T ss_pred CCchHHHHHH-HHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHHHHHcCCCeeEEEEeCCCHH--HHHHHHHHHH-
Confidence 4455544322 44555666543 2579999997 6788888888775432 223333221110 0000111110
Q ss_pred ccCCCccCcchHHHhccCcEEEEcccccchhhcCCCCCCCCcEEEEecCCCCCchhh--hHHHhhcccCCceEEEEcCCC
Q 037641 90 YEGGECFQLPSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDASSATEPET--MIALTNLANEHTTVILTGTPN 167 (208)
Q Consensus 90 ~~~~~~~~~~~~~~l~~~~Vv~~T~~~a~~l~~~~~~~~~Fd~vIIDEAsQa~Epe~--liPL~~l~~~~~~vVLvGD~~ 167 (208)
. ... ......|+++|..+.... ...+....|++||+|||-...-+.+ .-.+..+. ...++.|-|=|-
T Consensus 163 -~-~~~-------~~~~~~vvi~ty~~l~~~-~~~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~-~~~rl~LTgTPi 231 (644)
T 1z3i_X 163 -S-QQG-------MRIPTPILIISYETFRLH-AEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMN-AQRRVLISGTPI 231 (644)
T ss_dssp -C-CCS-------SCCSCCEEEEEHHHHHHH-TTTTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHC-CSEEEEECSSCS
T ss_pred -H-hcC-------CCCCCcEEEeeHHHHHhh-HHHhhcCCccEEEEECceecCChhhHHHHHHHhcc-cCcEEEEecCcc
Confidence 0 000 002468999998765432 2234456899999999999865543 33333332 457899999998
Q ss_pred CCC
Q 037641 168 NRT 170 (208)
Q Consensus 168 QL~ 170 (208)
|-.
T Consensus 232 qN~ 234 (644)
T 1z3i_X 232 QND 234 (644)
T ss_dssp GGG
T ss_pred cCC
Confidence 754
No 23
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=96.83 E-value=0.0056 Score=50.19 Aligned_cols=104 Identities=13% Similarity=0.052 Sum_probs=58.1
Q ss_pred chhHHHHHH--HH-HHHHcCCCCeEEEECCChHHHHHHHHHhhhhCC--CCCeEEEeccccCCCCCCchhhccccccCCC
Q 037641 20 KTGLVVREA--VL-EIYKRSSKCRILVCAPINRTGDVLMRSLKKKIP--KSDMFRANAAFREVDGVPVDILPLCLYEGGE 94 (208)
Q Consensus 20 ~t~~Tive~--i~-ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~~~--~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~ 94 (208)
++|+|++-. ++ .+.....+.++||.+||...++.+.+++.+... +..+..+.. +.
T Consensus 90 GsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g--------------------~~ 149 (249)
T 3ber_A 90 GSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVG--------------------GI 149 (249)
T ss_dssp TSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECT--------------------TS
T ss_pred CCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEEC--------------------CC
Confidence 355676532 33 344444467899999999999999888765321 111111110 00
Q ss_pred ccCcchHHHhccCcEEEEcccccchhh-c-CCCCCCCCcEEEEecCCCCCc
Q 037641 95 CFQLPSLQELMRFRVIFSTFTSSFRLH-N-EGIPAGHFSHIFLLDASSATE 143 (208)
Q Consensus 95 ~~~~~~~~~l~~~~Vv~~T~~~a~~l~-~-~~~~~~~Fd~vIIDEAsQa~E 143 (208)
............++|+++|-....... . ..+....++++|||||-.+.+
T Consensus 150 ~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~ 200 (249)
T 3ber_A 150 DSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILN 200 (249)
T ss_dssp CHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHH
T ss_pred ChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhc
Confidence 000001112356799999976543221 1 223345789999999986544
No 24
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=96.75 E-value=0.01 Score=47.95 Aligned_cols=103 Identities=13% Similarity=0.090 Sum_probs=56.2
Q ss_pred chhHHHHHHHHHHHH---cCCCCeEEEECCChHHHHHHHHHhhhhCCC--CCeEEEeccccCCCCCCchhhccccccCCC
Q 037641 20 KTGLVVREAVLEIYK---RSSKCRILVCAPINRTGDVLMRSLKKKIPK--SDMFRANAAFREVDGVPVDILPLCLYEGGE 94 (208)
Q Consensus 20 ~t~~Tive~i~ql~~---~~~~~rILV~A~SN~AvD~l~~rL~~~~~~--~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~ 94 (208)
++|+|++-++.-+.. ..++.++||.+||..-++.+.+++.+.... ..+..+....
T Consensus 77 GsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~-------------------- 136 (237)
T 3bor_A 77 GTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGT-------------------- 136 (237)
T ss_dssp SHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------------
T ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCC--------------------
Confidence 467887644332222 224679999999999999998888764321 1111111100
Q ss_pred ccCcchHHHh--ccCcEEEEcccccchhh-cCCCCCCCCcEEEEecCCCCCc
Q 037641 95 CFQLPSLQEL--MRFRVIFSTFTSSFRLH-NEGIPAGHFSHIFLLDASSATE 143 (208)
Q Consensus 95 ~~~~~~~~~l--~~~~Vv~~T~~~a~~l~-~~~~~~~~Fd~vIIDEAsQa~E 143 (208)
... ...+.+ ...+|+++|......+. ...+....+++||||||-.+.+
T Consensus 137 ~~~-~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~ 187 (237)
T 3bor_A 137 NVR-NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLS 187 (237)
T ss_dssp ------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHH
T ss_pred chH-HHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhc
Confidence 000 001111 23689999965433222 1123345799999999986543
No 25
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.70 E-value=0.0041 Score=49.40 Aligned_cols=102 Identities=12% Similarity=0.102 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHHHH--c-CCCCeEEEECCChHHHHHHHHHhhhhCC---CCCeEEEeccccCCCCCCchhhccccccCCC
Q 037641 21 TGLVVREAVLEIYK--R-SSKCRILVCAPINRTGDVLMRSLKKKIP---KSDMFRANAAFREVDGVPVDILPLCLYEGGE 94 (208)
Q Consensus 21 t~~Tive~i~ql~~--~-~~~~rILV~A~SN~AvD~l~~rL~~~~~---~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~ 94 (208)
+|+|++-.+.-+.. . ..+.++||.+||..-++.+.+++.+... +..+..+.. +.
T Consensus 62 sGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g--------------------~~ 121 (220)
T 1t6n_A 62 MGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFG--------------------GL 121 (220)
T ss_dssp SCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESC--------------------CS
T ss_pred CchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeC--------------------CC
Confidence 56776544332222 2 2245999999999999999888776432 111111110 00
Q ss_pred ccCcchHHHhc--cCcEEEEcccccchhh-cCCCCCCCCcEEEEecCCCCCc
Q 037641 95 CFQLPSLQELM--RFRVIFSTFTSSFRLH-NEGIPAGHFSHIFLLDASSATE 143 (208)
Q Consensus 95 ~~~~~~~~~l~--~~~Vv~~T~~~a~~l~-~~~~~~~~Fd~vIIDEAsQa~E 143 (208)
.. ....+.+. ..+|+++|......+. ...+....++++|||||-...+
T Consensus 122 ~~-~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~ 172 (220)
T 1t6n_A 122 SI-KKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 172 (220)
T ss_dssp CH-HHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHS
T ss_pred Ch-HHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhc
Confidence 00 01112222 3589999976543322 2223345799999999998765
No 26
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.67 E-value=0.013 Score=47.78 Aligned_cols=111 Identities=11% Similarity=0.095 Sum_probs=64.0
Q ss_pred chhHHHHHHHHHHHHcCCCCeEEEECCChHHHHHHHHHhhhhCCCCC-eEEEeccccCCCCCCchhhccccccCCCccCc
Q 037641 20 KTGLVVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSD-MFRANAAFREVDGVPVDILPLCLYEGGECFQL 98 (208)
Q Consensus 20 ~t~~Tive~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~-i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~~ 98 (208)
++|+|++.+.. +... +.++||.+|+..-++++.+++.+ ++ .. +..+.... .
T Consensus 118 G~GKT~~a~~~-~~~~--~~~~liv~P~~~L~~q~~~~~~~-~~-~~~v~~~~g~~-------------------~---- 169 (237)
T 2fz4_A 118 GSGKTHVAMAA-INEL--STPTLIVVPTLALAEQWKERLGI-FG-EEYVGEFSGRI-------------------K---- 169 (237)
T ss_dssp STTHHHHHHHH-HHHS--CSCEEEEESSHHHHHHHHHHHGG-GC-GGGEEEESSSC-------------------B----
T ss_pred CCCHHHHHHHH-HHHc--CCCEEEEeCCHHHHHHHHHHHHh-CC-CCeEEEEeCCC-------------------C----
Confidence 46677764332 2232 56899999999999998888876 42 11 22121100 0
Q ss_pred chHHHhccCcEEEEcccccchhhcCCCCCCCCcEEEEecCCCCCchhhhHHHhhcccCCceEEEEcCCC
Q 037641 99 PSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDASSATEPETMIALTNLANEHTTVILTGTPN 167 (208)
Q Consensus 99 ~~~~~l~~~~Vv~~T~~~a~~l~~~~~~~~~Fd~vIIDEAsQa~Epe~liPL~~l~~~~~~vVLvGD~~ 167 (208)
...+|+++|......... .+ ...|++||||||-....+.. -.+........++.|-|-|.
T Consensus 170 ------~~~~i~v~T~~~l~~~~~-~~-~~~~~llIiDEaH~l~~~~~-~~i~~~~~~~~~l~LSATp~ 229 (237)
T 2fz4_A 170 ------ELKPLTVSTYDSAYVNAE-KL-GNRFMLLIFDEVHHLPAESY-VQIAQMSIAPFRLGLTATFE 229 (237)
T ss_dssp ------CCCSEEEEEHHHHHHTHH-HH-TTTCSEEEEECSSCCCTTTH-HHHHHTCCCSEEEEEEESCC
T ss_pred ------CcCCEEEEeHHHHHhhHH-Hh-cccCCEEEEECCccCCChHH-HHHHHhccCCEEEEEecCCC
Confidence 135788888654332211 11 24699999999999876543 33332323334566666554
No 27
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=96.64 E-value=0.0045 Score=50.08 Aligned_cols=107 Identities=17% Similarity=0.233 Sum_probs=58.0
Q ss_pred chhHHHHHH--HHHHHHc--CCCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCCCc
Q 037641 20 KTGLVVREA--VLEIYKR--SSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGEC 95 (208)
Q Consensus 20 ~t~~Tive~--i~ql~~~--~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~ 95 (208)
++|+|++-. +++.+.. .++.++||.+||..-++.+.+++.+...... +++... ....... . .
T Consensus 76 GsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~-------~~~~~~~---~---~ 141 (245)
T 3dkp_A 76 GSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTG-FRIHMI-------HKAAVAA---K---K 141 (245)
T ss_dssp TSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSC-CCEECC-------CHHHHHH---T---T
T ss_pred CCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccC-ceEEEE-------ecCccHH---H---H
Confidence 356787643 2333322 2467899999999999999998876543211 111110 0000000 0 0
Q ss_pred cCcchHHHhccCcEEEEcccccchhhcC---CCCCCCCcEEEEecCCCCCc
Q 037641 96 FQLPSLQELMRFRVIFSTFTSSFRLHNE---GIPAGHFSHIFLLDASSATE 143 (208)
Q Consensus 96 ~~~~~~~~l~~~~Vv~~T~~~a~~l~~~---~~~~~~Fd~vIIDEAsQa~E 143 (208)
+. .......+|+++|-.....+... .+....++++|||||-.+.+
T Consensus 142 ~~---~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~ 189 (245)
T 3dkp_A 142 FG---PKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFE 189 (245)
T ss_dssp TS---TTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHH
T ss_pred hh---hhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcc
Confidence 00 00123578999996543322211 23345789999999987654
No 28
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=96.59 E-value=0.0076 Score=51.31 Aligned_cols=102 Identities=11% Similarity=0.109 Sum_probs=57.2
Q ss_pred chhHHHHHHHH--HHH-HcCCCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCCCcc
Q 037641 20 KTGLVVREAVL--EIY-KRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECF 96 (208)
Q Consensus 20 ~t~~Tive~i~--ql~-~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~ 96 (208)
++|+|++-.+. +.+ ...++.++||.+||..-++.+.+++.+......+ ++.... . ...
T Consensus 54 GsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~-~~~~~~----------------~--~~~ 114 (395)
T 3pey_A 54 GTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKI-TSQLIV----------------P--DSF 114 (395)
T ss_dssp TSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC-CEEEES----------------T--TSS
T ss_pred CCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccCe-eEEEEe----------------c--Cch
Confidence 35677754332 222 2235679999999999999999988764321110 011000 0 000
Q ss_pred CcchHHHhccCcEEEEcccccchhh-cCCCCCCCCcEEEEecCCCCCc
Q 037641 97 QLPSLQELMRFRVIFSTFTSSFRLH-NEGIPAGHFSHIFLLDASSATE 143 (208)
Q Consensus 97 ~~~~~~~l~~~~Vv~~T~~~a~~l~-~~~~~~~~Fd~vIIDEAsQa~E 143 (208)
. .....+++|+++|........ ...+....|++||||||-...+
T Consensus 115 ~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~ 159 (395)
T 3pey_A 115 E---KNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLD 159 (395)
T ss_dssp C---TTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHH
T ss_pred h---hhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcC
Confidence 0 001135789999976543322 2222345799999999986544
No 29
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=96.56 E-value=0.0081 Score=48.87 Aligned_cols=87 Identities=16% Similarity=0.147 Sum_probs=49.6
Q ss_pred CCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCCCccCcchHHH-hccCcEEEEcccc
Q 037641 38 KCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECFQLPSLQE-LMRFRVIFSTFTS 116 (208)
Q Consensus 38 ~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~~~~~~~-l~~~~Vv~~T~~~ 116 (208)
+.++||.+||..-++.+.+++.+...... +++.. ..++... ....+. ....+|+++|...
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~-----------------~~g~~~~-~~~~~~~~~~~~Ivv~Tp~~ 160 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTP-LRSCV-----------------VYGGADT-HSQIREVQMGCHLLVATPGR 160 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSS-CCEEE-----------------ECSSSCS-HHHHHHHSSCCSEEEECHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCC-ceEEE-----------------EECCCCH-HHHHHHhCCCCCEEEECHHH
Confidence 46999999999999999888876322111 11110 0000000 011122 2457899999765
Q ss_pred cchhhcC-CCCCCCCcEEEEecCCCCCc
Q 037641 117 SFRLHNE-GIPAGHFSHIFLLDASSATE 143 (208)
Q Consensus 117 a~~l~~~-~~~~~~Fd~vIIDEAsQa~E 143 (208)
...+... .+....++++|||||-.+.+
T Consensus 161 l~~~l~~~~~~~~~~~~lViDEah~~~~ 188 (253)
T 1wrb_A 161 LVDFIEKNKISLEFCKYIVLDEADRMLD 188 (253)
T ss_dssp HHHHHHTTSBCCTTCCEEEEETHHHHHH
T ss_pred HHHHHHcCCCChhhCCEEEEeCHHHHHh
Confidence 4332221 22345789999999987643
No 30
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=96.53 E-value=0.013 Score=52.52 Aligned_cols=106 Identities=8% Similarity=0.058 Sum_probs=62.8
Q ss_pred hhHHHHH--HHHHHHHcCC---CCeEEEECCChHHHHHHHHHhhhhCC--CCCeEEEeccccCCCCCCchhhccccccCC
Q 037641 21 TGLVVRE--AVLEIYKRSS---KCRILVCAPINRTGDVLMRSLKKKIP--KSDMFRANAAFREVDGVPVDILPLCLYEGG 93 (208)
Q Consensus 21 t~~Tive--~i~ql~~~~~---~~rILV~A~SN~AvD~l~~rL~~~~~--~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~ 93 (208)
+|+|++- .+.+.+...+ +.++||.+||..-+..+...+.+..+ +..+..+...
T Consensus 33 sGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~-------------------- 92 (556)
T 4a2p_A 33 SGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGE-------------------- 92 (556)
T ss_dssp SCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC--------------------
T ss_pred ChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCC--------------------
Confidence 4566654 3445555544 78999999999999999888876432 1222111110
Q ss_pred CccCcchHHHhccCcEEEEcccccchhhcC-CC-CCCCCcEEEEecCCCCCchhh
Q 037641 94 ECFQLPSLQELMRFRVIFSTFTSSFRLHNE-GI-PAGHFSHIFLLDASSATEPET 146 (208)
Q Consensus 94 ~~~~~~~~~~l~~~~Vv~~T~~~a~~l~~~-~~-~~~~Fd~vIIDEAsQa~Epe~ 146 (208)
..............+|+++|.......... .+ ....|++||||||-.+.....
T Consensus 93 ~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~ 147 (556)
T 4a2p_A 93 NFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP 147 (556)
T ss_dssp -----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSH
T ss_pred CCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcch
Confidence 000000112234689999998754432222 22 345799999999998876543
No 31
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=96.49 E-value=0.004 Score=54.28 Aligned_cols=100 Identities=9% Similarity=0.112 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHHHHcCCCCeEEEECCChHHHHHHHHHhhhhCC-CCCeEEEeccccCCCCCCchhhccccccCCCccCcc
Q 037641 21 TGLVVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIP-KSDMFRANAAFREVDGVPVDILPLCLYEGGECFQLP 99 (208)
Q Consensus 21 t~~Tive~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~~~-~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~~~ 99 (208)
+|+|++-++.-+....++.++||.+||..-+..+..++.+... +..+..+... .+..- ...
T Consensus 47 sGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~------~~~~~------------~~~ 108 (414)
T 3oiy_A 47 VGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSS------MKKEE------------KEK 108 (414)
T ss_dssp SSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTT------SCHHH------------HHH
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECC------CChhh------------HHH
Confidence 5688855444333334678999999999999999999987432 1111111110 00000 001
Q ss_pred hHHHhc--cCcEEEEcccccchhhcCCCCCCCCcEEEEecCC
Q 037641 100 SLQELM--RFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDAS 139 (208)
Q Consensus 100 ~~~~l~--~~~Vv~~T~~~a~~l~~~~~~~~~Fd~vIIDEAs 139 (208)
..+.+. +.+|+++|-........ .+....+++||||||-
T Consensus 109 ~~~~l~~~~~~Iiv~Tp~~l~~~l~-~~~~~~~~~iViDEaH 149 (414)
T 3oiy_A 109 FEKSFEEDDYHILVFSTQFVSKNRE-KLSQKRFDFVFVDDVD 149 (414)
T ss_dssp HHHHHHHTCCSEEEEEHHHHHHCHH-HHTTCCCSEEEESCHH
T ss_pred HHHHhhcCCCCEEEECHHHHHHHHH-HhccccccEEEEeChH
Confidence 122232 37999999764432211 1234579999999994
No 32
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=96.48 E-value=0.015 Score=46.24 Aligned_cols=106 Identities=15% Similarity=0.123 Sum_probs=56.7
Q ss_pred chhHHHHHHHHHHHH---cCCCCeEEEECCChHHHHHHHHHhhhhCCCCC---eEEEeccccCCCCCCchhhccccccCC
Q 037641 20 KTGLVVREAVLEIYK---RSSKCRILVCAPINRTGDVLMRSLKKKIPKSD---MFRANAAFREVDGVPVDILPLCLYEGG 93 (208)
Q Consensus 20 ~t~~Tive~i~ql~~---~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~---i~Rv~~~~r~~~~~~~~l~~~~~~~~~ 93 (208)
++|+|++-.+.-+.. ..++.++||.+||..-++.+.+++.+...... -+++... .++
T Consensus 51 GsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~-----------------~g~ 113 (219)
T 1q0u_A 51 GTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCL-----------------IGG 113 (219)
T ss_dssp SHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEE-----------------CCC
T ss_pred CChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEE-----------------eCC
Confidence 467888644332222 22467999999999999999888765321100 0111100 000
Q ss_pred CccCcchHHHh-ccCcEEEEcccccchhhcC-CCCCCCCcEEEEecCCCCCc
Q 037641 94 ECFQLPSLQEL-MRFRVIFSTFTSSFRLHNE-GIPAGHFSHIFLLDASSATE 143 (208)
Q Consensus 94 ~~~~~~~~~~l-~~~~Vv~~T~~~a~~l~~~-~~~~~~Fd~vIIDEAsQa~E 143 (208)
.... ...+.+ .+.+|+++|.......... .+....++++|||||-...+
T Consensus 114 ~~~~-~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~ 164 (219)
T 1q0u_A 114 TDKQ-KALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLD 164 (219)
T ss_dssp SHHH-HTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHH
T ss_pred CCHH-HHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhh
Confidence 0000 000001 2568999997644332221 22334689999999987554
No 33
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=96.43 E-value=0.013 Score=53.85 Aligned_cols=63 Identities=13% Similarity=0.180 Sum_probs=34.3
Q ss_pred cCcEEEEcccccchhh-----cCCCCCCCCcEEEEecCCCCCch--hhhHHHhhcccCCceEEEEcCCCC
Q 037641 106 RFRVIFSTFTSSFRLH-----NEGIPAGHFSHIFLLDASSATEP--ETMIALTNLANEHTTVILTGTPNN 168 (208)
Q Consensus 106 ~~~Vv~~T~~~a~~l~-----~~~~~~~~Fd~vIIDEAsQa~Ep--e~liPL~~l~~~~~~vVLvGD~~Q 168 (208)
..+|+++|........ ...+....|++||||||-.+... +.+-.+.........+.|-|=|..
T Consensus 274 ~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~il~~~~~~~~l~lTATP~~ 343 (590)
T 3h1t_A 274 SREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREILEYFEPAFQIGMTATPLR 343 (590)
T ss_dssp SCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------CHHHHHHSTTSEEEEEESSCSC
T ss_pred CCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHHHHHHHhCCcceEEEecccccc
Confidence 4689999987644321 11244567999999999988754 334344322223457777787764
No 34
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=96.35 E-value=0.0086 Score=54.25 Aligned_cols=101 Identities=13% Similarity=0.134 Sum_probs=57.4
Q ss_pred hhHHHHHH--HHHHH-HcCCCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCCCccC
Q 037641 21 TGLVVREA--VLEIY-KRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECFQ 97 (208)
Q Consensus 21 t~~Tive~--i~ql~-~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~ 97 (208)
+|||++-+ +++.+ ...++.++||.+|+..-++.+.+++.+......+ +.... .. +.
T Consensus 169 sGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~-~~~~~----------------~~-~~--- 227 (508)
T 3fho_A 169 TGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV-KTAFG----------------IK-DS--- 227 (508)
T ss_dssp TTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSC-CEEC-------------------------
T ss_pred ccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCe-eEEEE----------------eC-Cc---
Confidence 55676532 33333 3334569999999999999999998875422111 11100 00 00
Q ss_pred cchHHHhccCcEEEEcccccchh-hcCCCCCCCCcEEEEecCCCCCc
Q 037641 98 LPSLQELMRFRVIFSTFTSSFRL-HNEGIPAGHFSHIFLLDASSATE 143 (208)
Q Consensus 98 ~~~~~~l~~~~Vv~~T~~~a~~l-~~~~~~~~~Fd~vIIDEAsQa~E 143 (208)
.......+++|+++|....... ....+....|++||||||-...+
T Consensus 228 -~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~ 273 (508)
T 3fho_A 228 -VPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLD 273 (508)
T ss_dssp ------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTT
T ss_pred -ccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcc
Confidence 0001112578999997654332 22233445799999999987654
No 35
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=96.34 E-value=0.014 Score=48.69 Aligned_cols=99 Identities=13% Similarity=0.124 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHHHcCCCCeEEEECCChHHHHHHHHHhhhhCCC--CCeEEEeccccCCCCCCchhhccccccCCCccCc
Q 037641 21 TGLVVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPK--SDMFRANAAFREVDGVPVDILPLCLYEGGECFQL 98 (208)
Q Consensus 21 t~~Tive~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~--~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~~ 98 (208)
+|+|++-++. ++.. +.++||.+|+..-++.+.+++.+.... ..+.-+.. +.. ..
T Consensus 42 sGKT~~~~~~-~~~~--~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~--------------------~~~-~~ 97 (337)
T 2z0m_A 42 SGKTAAYAIP-ILEL--GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYG--------------------GMP-YK 97 (337)
T ss_dssp SSHHHHHHHH-HHHH--TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECT--------------------TSC-HH
T ss_pred CcHHHHHHHH-HHhh--cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEEC--------------------Ccc-hH
Confidence 5677754433 3333 678999999999999999998864321 11111110 000 00
Q ss_pred chHHHhccCcEEEEcccccchhhc-CCCCCCCCcEEEEecCCCCCc
Q 037641 99 PSLQELMRFRVIFSTFTSSFRLHN-EGIPAGHFSHIFLLDASSATE 143 (208)
Q Consensus 99 ~~~~~l~~~~Vv~~T~~~a~~l~~-~~~~~~~Fd~vIIDEAsQa~E 143 (208)
...+.+.+++|+++|......+.. ..+....|++||||||-.+.+
T Consensus 98 ~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~ 143 (337)
T 2z0m_A 98 AQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFE 143 (337)
T ss_dssp HHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHH
T ss_pred HHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhc
Confidence 112345568999999765433222 122335789999999987644
No 36
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=96.34 E-value=0.0079 Score=51.76 Aligned_cols=106 Identities=11% Similarity=0.078 Sum_probs=59.4
Q ss_pred chhHHHHHHHHHHHH---cCCCCeEEEECCChHHHHHHHHHhhhhCCCC--CeEEEeccccCCCCCCchhhccccccCCC
Q 037641 20 KTGLVVREAVLEIYK---RSSKCRILVCAPINRTGDVLMRSLKKKIPKS--DMFRANAAFREVDGVPVDILPLCLYEGGE 94 (208)
Q Consensus 20 ~t~~Tive~i~ql~~---~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~--~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~ 94 (208)
++|+|++-.+.-+.. ...+.++||.+||..-++.+.+++.+..... .+..+.. +.
T Consensus 68 GsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g--------------------~~ 127 (400)
T 1s2m_A 68 GTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTG--------------------GT 127 (400)
T ss_dssp TSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECS--------------------SS
T ss_pred CcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeC--------------------Cc
Confidence 355776544332222 2245699999999999999998887643221 1111110 00
Q ss_pred ccCcchHHHhccCcEEEEcccccchhhcC-CCCCCCCcEEEEecCCCCCchh
Q 037641 95 CFQLPSLQELMRFRVIFSTFTSSFRLHNE-GIPAGHFSHIFLLDASSATEPE 145 (208)
Q Consensus 95 ~~~~~~~~~l~~~~Vv~~T~~~a~~l~~~-~~~~~~Fd~vIIDEAsQa~Epe 145 (208)
............++|+++|......+... ......|++||||||-.+....
T Consensus 128 ~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~ 179 (400)
T 1s2m_A 128 NLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRD 179 (400)
T ss_dssp CHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHH
T ss_pred chHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhc
Confidence 00000011124578999997644322221 2234579999999999877654
No 37
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=96.32 E-value=0.0062 Score=52.03 Aligned_cols=105 Identities=14% Similarity=0.129 Sum_probs=59.9
Q ss_pred chhHHHHHHH--HHHH-HcCCCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCCCcc
Q 037641 20 KTGLVVREAV--LEIY-KRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECF 96 (208)
Q Consensus 20 ~t~~Tive~i--~ql~-~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~ 96 (208)
++|+|++-++ ++.+ ....+.++||.+|+..-++.+.+++.+...... +++... ..+..
T Consensus 68 GsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~-----------------~g~~~- 128 (394)
T 1fuu_A 68 GTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD-IKVHAC-----------------IGGTS- 128 (394)
T ss_dssp SHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC-CCEEEE-----------------CSSCC-
T ss_pred CChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCC-eeEEEE-----------------eCCCc-
Confidence 4668876433 2222 223467999999999999999888876432211 111110 00000
Q ss_pred CcchHHHhccCcEEEEcccccchhh-cCCCCCCCCcEEEEecCCCCCc
Q 037641 97 QLPSLQELMRFRVIFSTFTSSFRLH-NEGIPAGHFSHIFLLDASSATE 143 (208)
Q Consensus 97 ~~~~~~~l~~~~Vv~~T~~~a~~l~-~~~~~~~~Fd~vIIDEAsQa~E 143 (208)
.....+.+.+++|+++|........ ...+....|++||||||-...+
T Consensus 129 ~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~ 176 (394)
T 1fuu_A 129 FVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLS 176 (394)
T ss_dssp HHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHH
T ss_pred hHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhC
Confidence 0011233457899999976543322 2223345799999999987543
No 38
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=96.31 E-value=0.015 Score=51.84 Aligned_cols=106 Identities=10% Similarity=0.054 Sum_probs=62.6
Q ss_pred hhHHHHH--HHHHHHHcCC---CCeEEEECCChHHHHHHHHHhhhhCC--CCCeEEEeccccCCCCCCchhhccccccCC
Q 037641 21 TGLVVRE--AVLEIYKRSS---KCRILVCAPINRTGDVLMRSLKKKIP--KSDMFRANAAFREVDGVPVDILPLCLYEGG 93 (208)
Q Consensus 21 t~~Tive--~i~ql~~~~~---~~rILV~A~SN~AvD~l~~rL~~~~~--~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~ 93 (208)
+|+|++- .+.+.+...+ +.++||.+||..-+..+...+.+..+ +..+..+....
T Consensus 30 sGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~------------------- 90 (555)
T 3tbk_A 30 CGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGAT------------------- 90 (555)
T ss_dssp SCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTT-------------------
T ss_pred ChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCC-------------------
Confidence 4466553 3445555544 78999999999999998888876432 22222221110
Q ss_pred CccCcchHHHhccCcEEEEcccccchhhcCC-C-CCCCCcEEEEecCCCCCchhh
Q 037641 94 ECFQLPSLQELMRFRVIFSTFTSSFRLHNEG-I-PAGHFSHIFLLDASSATEPET 146 (208)
Q Consensus 94 ~~~~~~~~~~l~~~~Vv~~T~~~a~~l~~~~-~-~~~~Fd~vIIDEAsQa~Epe~ 146 (208)
.............+|+++|........... + ....|++||||||-.+.....
T Consensus 91 -~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~ 144 (555)
T 3tbk_A 91 -SDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHP 144 (555)
T ss_dssp -GGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCH
T ss_pred -cchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcch
Confidence 000001122346899999977544332221 2 234689999999999877643
No 39
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=96.21 E-value=0.012 Score=50.21 Aligned_cols=103 Identities=12% Similarity=0.110 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHH--HH-cCCCCeEEEECCChHHHHHHHHHhhhhCC---CCCeEEEeccccCCCCCCchhhccccccCCC
Q 037641 21 TGLVVREAVLEI--YK-RSSKCRILVCAPINRTGDVLMRSLKKKIP---KSDMFRANAAFREVDGVPVDILPLCLYEGGE 94 (208)
Q Consensus 21 t~~Tive~i~ql--~~-~~~~~rILV~A~SN~AvD~l~~rL~~~~~---~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~ 94 (208)
+|+|++-++.-+ +. ..++.++||.+||..-++.+..++.+... +..+..+.. +.
T Consensus 56 sGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g--------------------~~ 115 (391)
T 1xti_A 56 MGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFG--------------------GL 115 (391)
T ss_dssp SSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECT--------------------TS
T ss_pred CcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeC--------------------CC
Confidence 567765433322 22 22356999999999999999888776432 122111111 00
Q ss_pred ccCcchHHHh--ccCcEEEEcccccchhh-cCCCCCCCCcEEEEecCCCCCch
Q 037641 95 CFQLPSLQEL--MRFRVIFSTFTSSFRLH-NEGIPAGHFSHIFLLDASSATEP 144 (208)
Q Consensus 95 ~~~~~~~~~l--~~~~Vv~~T~~~a~~l~-~~~~~~~~Fd~vIIDEAsQa~Ep 144 (208)
... ...+.+ ...+|+++|......+. ...+....|++||||||-...+.
T Consensus 116 ~~~-~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~ 167 (391)
T 1xti_A 116 SIK-KDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 167 (391)
T ss_dssp CHH-HHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSS
T ss_pred CHH-HHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhc
Confidence 000 011122 23689999976543322 22233457999999999988764
No 40
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=96.12 E-value=0.013 Score=52.63 Aligned_cols=120 Identities=11% Similarity=0.047 Sum_probs=65.9
Q ss_pred hhHHHHH--HHHHHHHcCCCCeEEEECCChHHHHHHHHHhhhhC--CCCCeEEEeccccCCCCCCchhhccccccCCCcc
Q 037641 21 TGLVVRE--AVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKI--PKSDMFRANAAFREVDGVPVDILPLCLYEGGECF 96 (208)
Q Consensus 21 t~~Tive--~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~~--~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~ 96 (208)
+|+|++- ++.+.+.. ++.++||.+|+..-+++..+++.+.. ++..+..+.+... . .
T Consensus 139 sGKT~~~~~~~~~~~~~-~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~----~------------~--- 198 (510)
T 2oca_A 139 AGRSLIQALLARYYLEN-YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGAS----K------------D--- 198 (510)
T ss_dssp TTHHHHHHHHHHHHHHH-CSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCC----T------------T---
T ss_pred CCHHHHHHHHHHHHHhC-CCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCc----c------------c---
Confidence 4566654 34444443 34599999999999999999997531 1112221111000 0 0
Q ss_pred CcchHHHhccCcEEEEcccccchhhcCCCCCCCCcEEEEecCCCCCchhhhHHHhhcccCCceEEEEcCC
Q 037641 97 QLPSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDASSATEPETMIALTNLANEHTTVILTGTP 166 (208)
Q Consensus 97 ~~~~~~~l~~~~Vv~~T~~~a~~l~~~~~~~~~Fd~vIIDEAsQa~Epe~liPL~~l~~~~~~vVLvGD~ 166 (208)
.+.....+|+++|........ ......|++||||||-....+..---+..+......+.|-|=|
T Consensus 199 ----~~~~~~~~I~i~T~~~l~~~~--~~~~~~~~liIiDE~H~~~~~~~~~il~~~~~~~~~l~lSATp 262 (510)
T 2oca_A 199 ----DKYKNDAPVVVGTWQTVVKQP--KEWFSQFGMMMNDECHLATGKSISSIISGLNNCMFKFGLSGSL 262 (510)
T ss_dssp ----GGGCTTCSEEEEEHHHHTTSC--GGGGGGEEEEEEETGGGCCHHHHHHHGGGCTTCCEEEEEESCG
T ss_pred ----cccccCCcEEEEeHHHHhhch--hhhhhcCCEEEEECCcCCCcccHHHHHHhcccCcEEEEEEeCC
Confidence 011245789999977433210 1112468999999999988765322223222222344445555
No 41
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=96.09 E-value=0.01 Score=51.03 Aligned_cols=103 Identities=12% Similarity=0.046 Sum_probs=55.1
Q ss_pred hhHHHHHH--HHHHH-HcCCCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCCCccC
Q 037641 21 TGLVVREA--VLEIY-KRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECFQ 97 (208)
Q Consensus 21 t~~Tive~--i~ql~-~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~ 97 (208)
+|+|++-. +++.+ ...++.++||.+||..-++.+.+++.+......-++++.... +..+.
T Consensus 75 sGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 137 (412)
T 3fht_A 75 TGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR-----------------GNKLE 137 (412)
T ss_dssp SCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECT-----------------TCCCC
T ss_pred chHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeec-----------------Ccchh
Confidence 56777643 23222 233456999999999999999877765321110011111000 00000
Q ss_pred cchHHHhccCcEEEEcccccchhh-c-CCCCCCCCcEEEEecCCCCCc
Q 037641 98 LPSLQELMRFRVIFSTFTSSFRLH-N-EGIPAGHFSHIFLLDASSATE 143 (208)
Q Consensus 98 ~~~~~~l~~~~Vv~~T~~~a~~l~-~-~~~~~~~Fd~vIIDEAsQa~E 143 (208)
.......+|+++|......+. . ..+....|++||||||-.+.+
T Consensus 138 ---~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~ 182 (412)
T 3fht_A 138 ---RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIA 182 (412)
T ss_dssp ---TTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHS
T ss_pred ---hhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhh
Confidence 000124689999976543322 1 122235799999999986543
No 42
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=96.06 E-value=0.024 Score=54.15 Aligned_cols=107 Identities=7% Similarity=0.044 Sum_probs=62.7
Q ss_pred hhHHHHH--HHHHHHHcCC---CCeEEEECCChHHHHHHHHHhhhhCC--CCCeEEEeccccCCCCCCchhhccccccCC
Q 037641 21 TGLVVRE--AVLEIYKRSS---KCRILVCAPINRTGDVLMRSLKKKIP--KSDMFRANAAFREVDGVPVDILPLCLYEGG 93 (208)
Q Consensus 21 t~~Tive--~i~ql~~~~~---~~rILV~A~SN~AvD~l~~rL~~~~~--~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~ 93 (208)
+|+|++- .+.+.+...+ +.++||.+||..-+..+...+.+..+ +..+..+....
T Consensus 274 sGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~------------------- 334 (797)
T 4a2q_A 274 SGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGEN------------------- 334 (797)
T ss_dssp SCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC--------------------
T ss_pred ChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCc-------------------
Confidence 4566653 3445555544 78999999999999999888876432 22222222110
Q ss_pred CccCcchHHHhccCcEEEEcccccchhhcC-CC-CCCCCcEEEEecCCCCCchhhh
Q 037641 94 ECFQLPSLQELMRFRVIFSTFTSSFRLHNE-GI-PAGHFSHIFLLDASSATEPETM 147 (208)
Q Consensus 94 ~~~~~~~~~~l~~~~Vv~~T~~~a~~l~~~-~~-~~~~Fd~vIIDEAsQa~Epe~l 147 (208)
............++|+++|.......... .+ ....|++||||||-.+.....+
T Consensus 335 -~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~ 389 (797)
T 4a2q_A 335 -FSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPY 389 (797)
T ss_dssp -----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHH
T ss_pred -chhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccH
Confidence 00000112235689999997654332221 22 2346899999999888765433
No 43
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=95.97 E-value=0.011 Score=50.97 Aligned_cols=89 Identities=15% Similarity=0.146 Sum_probs=50.5
Q ss_pred CCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCCCccCcchHHH--hccCcEEEEcc
Q 037641 37 SKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECFQLPSLQE--LMRFRVIFSTF 114 (208)
Q Consensus 37 ~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~~~~~~~--l~~~~Vv~~T~ 114 (208)
.+.++||.+||..-++.+.+++.+...... .+++.. ..+.... ...+. ....+|+++|-
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~-----------------~~~~~~~-~~~~~~~~~~~~iiv~T~ 167 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMG-ASCHAC-----------------IGGTNVR-AEVQKLQMEAPHIIVGTP 167 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSC-CCEEEC-----------------CCCTTHH-HHHHHHTTTCCSEEEECH
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccC-ceEEEE-----------------ECCcchH-HHHHHHhcCCCCEEEECH
Confidence 567999999999999999888876321110 011110 0000000 01111 14578999996
Q ss_pred cccchh-hcCCCCCCCCcEEEEecCCCCCch
Q 037641 115 TSSFRL-HNEGIPAGHFSHIFLLDASSATEP 144 (208)
Q Consensus 115 ~~a~~l-~~~~~~~~~Fd~vIIDEAsQa~Ep 144 (208)
...... ....+....+++||||||-.+.+.
T Consensus 168 ~~l~~~l~~~~~~~~~~~~vViDEah~~~~~ 198 (414)
T 3eiq_A 168 GRVFDMLNRRYLSPKYIKMFVLDEADEMLSR 198 (414)
T ss_dssp HHHHHHHHHTSSCSTTCCEEEECSHHHHHHT
T ss_pred HHHHHHHHcCCcccccCcEEEEECHHHhhcc
Confidence 543222 222234457999999999875433
No 44
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=95.87 E-value=0.026 Score=46.55 Aligned_cols=105 Identities=13% Similarity=0.150 Sum_probs=57.4
Q ss_pred chhHHHHHHH--HHHHHc-----CCCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccC
Q 037641 20 KTGLVVREAV--LEIYKR-----SSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEG 92 (208)
Q Consensus 20 ~t~~Tive~i--~ql~~~-----~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~ 92 (208)
++|+|++-.+ ++.+.. ..+.++||.+||..-+..+.+++.+...... .+++. ...
T Consensus 101 GsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~-~~~~~-----------------~~g 162 (262)
T 3ly5_A 101 GSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHV-HTYGL-----------------IMG 162 (262)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCC-SCEEE-----------------ECS
T ss_pred CCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcC-ceEEE-----------------EEC
Confidence 3567876432 333322 2367899999999999999988887532211 01110 000
Q ss_pred CCccCcchHHH-hccCcEEEEcccccchhh-c-CCCCCCCCcEEEEecCCCCCc
Q 037641 93 GECFQLPSLQE-LMRFRVIFSTFTSSFRLH-N-EGIPAGHFSHIFLLDASSATE 143 (208)
Q Consensus 93 ~~~~~~~~~~~-l~~~~Vv~~T~~~a~~l~-~-~~~~~~~Fd~vIIDEAsQa~E 143 (208)
+.. .....+. -...+|+++|-....... . ..+....++++|||||-.+.+
T Consensus 163 ~~~-~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~ 215 (262)
T 3ly5_A 163 GSN-RSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILD 215 (262)
T ss_dssp SSC-HHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHH
T ss_pred CCC-HHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhh
Confidence 000 0011111 235789999964332211 1 123345789999999986544
No 45
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=95.74 E-value=0.032 Score=48.03 Aligned_cols=86 Identities=15% Similarity=0.098 Sum_probs=49.1
Q ss_pred CeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCCCccCcchHHH-hccCcEEEEccccc
Q 037641 39 CRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECFQLPSLQE-LMRFRVIFSTFTSS 117 (208)
Q Consensus 39 ~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~~~~~~~-l~~~~Vv~~T~~~a 117 (208)
.++||.+||..-+..+.+++.+...... +++... .++... ....+. -..++|+++|....
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~-----------------~g~~~~-~~~~~~~~~~~~I~v~Tp~~l 162 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSR-VRPCVV-----------------YGGADI-GQQIRDLERGCHLLVATPGRL 162 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSS-CCEEEE-----------------CSSSCH-HHHHHHHTTCCSEEEECHHHH
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCC-ceEEEE-----------------ECCCCH-HHHHHHhhCCCCEEEEChHHH
Confidence 5799999999999999988876321111 111110 000000 001112 23578999997654
Q ss_pred chhh-cCCCCCCCCcEEEEecCCCCCc
Q 037641 118 FRLH-NEGIPAGHFSHIFLLDASSATE 143 (208)
Q Consensus 118 ~~l~-~~~~~~~~Fd~vIIDEAsQa~E 143 (208)
..+. ...+....+++||||||-...+
T Consensus 163 ~~~l~~~~~~~~~~~~iViDEah~~~~ 189 (417)
T 2i4i_A 163 VDMMERGKIGLDFCKYLVLDEADRMLD 189 (417)
T ss_dssp HHHHHTTSBCCTTCCEEEESSHHHHHH
T ss_pred HHHHHcCCcChhhCcEEEEEChhHhhc
Confidence 3322 2223345789999999987544
No 46
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=95.71 E-value=0.021 Score=49.36 Aligned_cols=107 Identities=15% Similarity=0.171 Sum_probs=59.1
Q ss_pred chhHHHHHHH--HHHHH-cCCCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCCCcc
Q 037641 20 KTGLVVREAV--LEIYK-RSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECF 96 (208)
Q Consensus 20 ~t~~Tive~i--~ql~~-~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~ 96 (208)
++|+|++-.+ ++.+. ..++.++||.+||..-+..+.+++.+...... +++... ..+...
T Consensus 84 GsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~-----------------~g~~~~ 145 (410)
T 2j0s_A 84 GTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMN-VQCHAC-----------------IGGTNV 145 (410)
T ss_dssp TSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT-CCEEEE-----------------CTTSCH
T ss_pred CCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCC-eEEEEE-----------------ECCCCH
Confidence 3567776543 23222 23568999999999999999988876321111 111110 000000
Q ss_pred CcchHHHh-ccCcEEEEcccccchhh-cCCCCCCCCcEEEEecCCCCCchh
Q 037641 97 QLPSLQEL-MRFRVIFSTFTSSFRLH-NEGIPAGHFSHIFLLDASSATEPE 145 (208)
Q Consensus 97 ~~~~~~~l-~~~~Vv~~T~~~a~~l~-~~~~~~~~Fd~vIIDEAsQa~Epe 145 (208)
....+.+ ...+|+++|......+. ...+....+++||||||-.+....
T Consensus 146 -~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~ 195 (410)
T 2j0s_A 146 -GEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKG 195 (410)
T ss_dssp -HHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTT
T ss_pred -HHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhh
Confidence 0011122 35689999975433222 222344579999999998765543
No 47
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=95.70 E-value=0.08 Score=49.15 Aligned_cols=106 Identities=12% Similarity=0.073 Sum_probs=60.8
Q ss_pred hhHHHHHH--HHHHHHcCC---CCeEEEECCChHHHHHHHHHhhhhCCC--CCeEEEeccccCCCCCCchhhccccccCC
Q 037641 21 TGLVVREA--VLEIYKRSS---KCRILVCAPINRTGDVLMRSLKKKIPK--SDMFRANAAFREVDGVPVDILPLCLYEGG 93 (208)
Q Consensus 21 t~~Tive~--i~ql~~~~~---~~rILV~A~SN~AvD~l~~rL~~~~~~--~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~ 93 (208)
+|+|++-. +++.+...+ +.++||.+||..-+.+..+.+.+..+. ..+..+...
T Consensus 39 sGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~-------------------- 98 (696)
T 2ykg_A 39 CGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGA-------------------- 98 (696)
T ss_dssp SSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSS--------------------
T ss_pred chHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCC--------------------
Confidence 44666543 333344332 269999999999899888888775432 222111110
Q ss_pred CccCcchHHHhccCcEEEEcccccchhhcCC-C-CCCCCcEEEEecCCCCCchhh
Q 037641 94 ECFQLPSLQELMRFRVIFSTFTSSFRLHNEG-I-PAGHFSHIFLLDASSATEPET 146 (208)
Q Consensus 94 ~~~~~~~~~~l~~~~Vv~~T~~~a~~l~~~~-~-~~~~Fd~vIIDEAsQa~Epe~ 146 (208)
..............+|+++|........... + ....|++||||||-.+.....
T Consensus 99 ~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~ 153 (696)
T 2ykg_A 99 TAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHP 153 (696)
T ss_dssp SCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCH
T ss_pred ccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCccc
Confidence 0000111122346899999976544332221 2 234689999999999876544
No 48
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=95.51 E-value=0.063 Score=47.40 Aligned_cols=105 Identities=11% Similarity=0.150 Sum_probs=58.6
Q ss_pred hhHHHHH---HHHHHHHcC-----CCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccC
Q 037641 21 TGLVVRE---AVLEIYKRS-----SKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEG 92 (208)
Q Consensus 21 t~~Tive---~i~ql~~~~-----~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~ 92 (208)
+|+|++- ++..++... .+.++||.+||..-+..+.+.+.+...... ++++. .+.
T Consensus 104 sGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~-~~~~~----------------~~g- 165 (434)
T 2db3_A 104 SGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESY-LKIGI----------------VYG- 165 (434)
T ss_dssp SSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSS-CCCCE----------------ECT-
T ss_pred CCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCC-cEEEE----------------EEC-
Confidence 4577754 333444432 256999999999999999888876432110 11110 000
Q ss_pred CCccCcchHHH-hccCcEEEEcccccchhhc-CCCCCCCCcEEEEecCCCCCch
Q 037641 93 GECFQLPSLQE-LMRFRVIFSTFTSSFRLHN-EGIPAGHFSHIFLLDASSATEP 144 (208)
Q Consensus 93 ~~~~~~~~~~~-l~~~~Vv~~T~~~a~~l~~-~~~~~~~Fd~vIIDEAsQa~Ep 144 (208)
+.... ...+. -..++|+++|-.....+.. ..+....++++|+|||-.+.+.
T Consensus 166 g~~~~-~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~ 218 (434)
T 2db3_A 166 GTSFR-HQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDM 218 (434)
T ss_dssp TSCHH-HHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTST
T ss_pred CCCHH-HHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhcc
Confidence 11000 11122 2457999999754333222 1223457899999999886653
No 49
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=95.45 E-value=0.06 Score=52.81 Aligned_cols=132 Identities=12% Similarity=0.134 Sum_probs=73.8
Q ss_pred chhHHHHH--HHHHHHHcCCCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCCCccC
Q 037641 20 KTGLVVRE--AVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECFQ 97 (208)
Q Consensus 20 ~t~~Tive--~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~ 97 (208)
++|||++. ++.+++...+..++||.+|+ .-+++....+.+.++ ..+.-++. .+. .. .... +
T Consensus 180 GlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~-l~v~v~~~-~~~--------~~-~~~~-~---- 242 (968)
T 3dmq_A 180 GLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFN-LRFALFDD-ERY--------AE-AQHD-A---- 242 (968)
T ss_dssp TSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSC-CCCEECCH-HHH--------HH-HHHT-T----
T ss_pred CCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhC-CCEEEEcc-chh--------hh-hhhh-c----
Confidence 34555543 45566666566799999999 778998888877652 22221111 110 00 0000 0
Q ss_pred cchHHHhccCcEEEEcccccchhhc--CCCCCCCCcEEEEecCCCCCchhh-----hHHHhhccc-CCceEEEEcCCCCC
Q 037641 98 LPSLQELMRFRVIFSTFTSSFRLHN--EGIPAGHFSHIFLLDASSATEPET-----MIALTNLAN-EHTTVILTGTPNNR 169 (208)
Q Consensus 98 ~~~~~~l~~~~Vv~~T~~~a~~l~~--~~~~~~~Fd~vIIDEAsQa~Epe~-----liPL~~l~~-~~~~vVLvGD~~QL 169 (208)
.......+||++|......-.. ..+....|++||||||-...-+.. .-.+..+.. ....+.|-|=|.|.
T Consensus 243 ---~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n 319 (968)
T 3dmq_A 243 ---YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQL 319 (968)
T ss_dssp ---CSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSS
T ss_pred ---ccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCCcEEEEEcCCccC
Confidence 0112457899999775432100 012234799999999999865432 112222222 23579999999875
Q ss_pred Cc
Q 037641 170 TS 171 (208)
Q Consensus 170 ~P 171 (208)
.+
T Consensus 320 ~~ 321 (968)
T 3dmq_A 320 GM 321 (968)
T ss_dssp CS
T ss_pred CH
Confidence 44
No 50
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=95.37 E-value=0.011 Score=54.93 Aligned_cols=103 Identities=11% Similarity=0.115 Sum_probs=58.0
Q ss_pred hhHHHHHH--HHHHHHcCC----CCeEEEECCChHHHHHH-HHHhhhhCCC-CCeEEEeccccCCCCCCchhhccccccC
Q 037641 21 TGLVVREA--VLEIYKRSS----KCRILVCAPINRTGDVL-MRSLKKKIPK-SDMFRANAAFREVDGVPVDILPLCLYEG 92 (208)
Q Consensus 21 t~~Tive~--i~ql~~~~~----~~rILV~A~SN~AvD~l-~~rL~~~~~~-~~i~Rv~~~~r~~~~~~~~l~~~~~~~~ 92 (208)
.|+|++-. +.+.+...+ +.++||.+|+..-+..+ .+++.+..+. ..+..+.....
T Consensus 33 sGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~----------------- 95 (699)
T 4gl2_A 33 CGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQ----------------- 95 (699)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC---------------------
T ss_pred CcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcc-----------------
Confidence 44676543 334433322 27999999999998888 8888775433 22222211100
Q ss_pred CCccCcchHHHhccCcEEEEcccccchhh-------cCCCCCCCCcEEEEecCCCCCc
Q 037641 93 GECFQLPSLQELMRFRVIFSTFTSSFRLH-------NEGIPAGHFSHIFLLDASSATE 143 (208)
Q Consensus 93 ~~~~~~~~~~~l~~~~Vv~~T~~~a~~l~-------~~~~~~~~Fd~vIIDEAsQa~E 143 (208)
............+|+++|-....... ...+....|++||||||-.+..
T Consensus 96 ---~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~ 150 (699)
T 4gl2_A 96 ---LKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 150 (699)
T ss_dssp ---CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBT
T ss_pred ---hhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCc
Confidence 00001122356899999976544321 1122345799999999997644
No 51
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=95.37 E-value=0.045 Score=51.82 Aligned_cols=79 Identities=18% Similarity=0.187 Sum_probs=51.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCCCccCcchHHHhccCcEEEEccccc
Q 037641 38 KCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECFQLPSLQELMRFRVIFSTFTSS 117 (208)
Q Consensus 38 ~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~Vv~~T~~~a 117 (208)
+.++||.+||...+..+.+++.+.++...-.+++... . -...+|+++|-...
T Consensus 257 g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~---------------~-------------~~~~~IlV~TPGrL 308 (666)
T 3o8b_A 257 GYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT---------------I-------------TTGAPVTYSTYGKF 308 (666)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE---------------E-------------CCCCSEEEEEHHHH
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe---------------c-------------cCCCCEEEECcHHH
Confidence 6699999999999999999988754322112222100 0 12468888885321
Q ss_pred chhhcCCCCCCCCcEEEEecCCCCCchhhh
Q 037641 118 FRLHNEGIPAGHFSHIFLLDASSATEPETM 147 (208)
Q Consensus 118 ~~l~~~~~~~~~Fd~vIIDEAsQa~Epe~l 147 (208)
+....+....+++|||||| ++......
T Consensus 309 --l~~~~l~l~~l~~lVlDEA-H~l~~~~~ 335 (666)
T 3o8b_A 309 --LADGGCSGGAYDIIICDEC-HSTDSTTI 335 (666)
T ss_dssp --HHTTSCCTTSCSEEEETTT-TCCSHHHH
T ss_pred --HhCCCcccCcccEEEEccc-hhcCccHH
Confidence 2222344457999999999 88877663
No 52
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.34 E-value=0.072 Score=42.93 Aligned_cols=86 Identities=10% Similarity=0.014 Sum_probs=49.0
Q ss_pred CCCeEEEECCChHHHHHHHHHhhhhCC--CCCeEEEeccccCCCCCCchhhccccccCCCccCcchHHH-hccCcEEEEc
Q 037641 37 SKCRILVCAPINRTGDVLMRSLKKKIP--KSDMFRANAAFREVDGVPVDILPLCLYEGGECFQLPSLQE-LMRFRVIFST 113 (208)
Q Consensus 37 ~~~rILV~A~SN~AvD~l~~rL~~~~~--~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~~~~~~~-l~~~~Vv~~T 113 (208)
.+.++||.+||..-++.+.+.+.+... +..+..+.. +... ....+. -..++|+++|
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g--------------------~~~~-~~~~~~~~~~~~I~v~T 159 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYG--------------------GAPK-GPQIRDLERGVEICIAT 159 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECT--------------------TSCH-HHHHHHHHHCCSEEEEC
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEEC--------------------CCCh-HHHHHHhcCCCCEEEEC
Confidence 467899999999999998777765321 111111111 0000 001111 2357899999
Q ss_pred ccccchhh-cCCCCCCCCcEEEEecCCCCCc
Q 037641 114 FTSSFRLH-NEGIPAGHFSHIFLLDASSATE 143 (208)
Q Consensus 114 ~~~a~~l~-~~~~~~~~Fd~vIIDEAsQa~E 143 (208)
-.....+. ........++++|||||-.+.+
T Consensus 160 p~~l~~~l~~~~~~~~~~~~lViDEah~l~~ 190 (242)
T 3fe2_A 160 PGRLIDFLECGKTNLRRTTYLVLDEADRMLD 190 (242)
T ss_dssp HHHHHHHHHHTSCCCTTCCEEEETTHHHHHH
T ss_pred HHHHHHHHHcCCCCcccccEEEEeCHHHHhh
Confidence 76443221 2223345789999999986544
No 53
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=95.22 E-value=0.088 Score=46.56 Aligned_cols=110 Identities=11% Similarity=0.083 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHHHcCCCCeEEEECCChHHHHHHHHHhhhhCCCCC-eEEEeccccCCCCCCchhhccccccCCCccCcc
Q 037641 21 TGLVVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSD-MFRANAAFREVDGVPVDILPLCLYEGGECFQLP 99 (208)
Q Consensus 21 t~~Tive~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~-i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~~~ 99 (208)
.|||++-+.. +... +.++||.+|+..-+.++..++.+ ++ .. +..+.+ +. .
T Consensus 119 sGKT~~~l~~-i~~~--~~~~Lvl~P~~~L~~Q~~~~~~~-~~-~~~v~~~~g--------------------~~--~-- 169 (472)
T 2fwr_A 119 SGKTHVAMAA-INEL--STPTLIVVPTLALAEQWKERLGI-FG-EEYVGEFSG--------------------RI--K-- 169 (472)
T ss_dssp SCHHHHHHHH-HHHH--CSCEEEEESSHHHHHHHHHHGGG-GC-GGGEEEBSS--------------------SC--B--
T ss_pred CCHHHHHHHH-HHHc--CCCEEEEECCHHHHHHHHHHHHh-CC-CcceEEECC--------------------Cc--C--
Confidence 4567654322 2222 56899999999999999999887 42 11 111111 00 0
Q ss_pred hHHHhccCcEEEEcccccchhhcCCCCCCCCcEEEEecCCCCCchhhhHHHhhcccCCceEEEEcCCC
Q 037641 100 SLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDASSATEPETMIALTNLANEHTTVILTGTPN 167 (208)
Q Consensus 100 ~~~~l~~~~Vv~~T~~~a~~l~~~~~~~~~Fd~vIIDEAsQa~Epe~liPL~~l~~~~~~vVLvGD~~ 167 (208)
...+|+++|......... .+ ...|++||||||-....+..- .+.........+.|-|=|.
T Consensus 170 -----~~~~Ivv~T~~~l~~~~~-~~-~~~~~liIvDEaH~~~~~~~~-~~~~~~~~~~~l~lSATp~ 229 (472)
T 2fwr_A 170 -----ELKPLTVSTYDSAYVNAE-KL-GNRFMLLIFDEVHHLPAESYV-QIAQMSIAPFRLGLTATFE 229 (472)
T ss_dssp -----CCCSEEEEEHHHHHHTHH-HH-TTTCSEEEEETGGGTTSTTTH-HHHHTCCCSEEEEEESCCC
T ss_pred -----CcCCEEEEEcHHHHHHHH-Hh-cCCCCEEEEECCcCCCChHHH-HHHHhcCCCeEEEEecCcc
Confidence 135899999765433221 11 246999999999998876542 3332323345566677765
No 54
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=95.13 E-value=0.05 Score=53.17 Aligned_cols=106 Identities=8% Similarity=0.038 Sum_probs=61.4
Q ss_pred hhHHHHHH--HHHHHHcCC---CCeEEEECCChHHHHHHHHHhhhhCC--CCCeEEEeccccCCCCCCchhhccccccCC
Q 037641 21 TGLVVREA--VLEIYKRSS---KCRILVCAPINRTGDVLMRSLKKKIP--KSDMFRANAAFREVDGVPVDILPLCLYEGG 93 (208)
Q Consensus 21 t~~Tive~--i~ql~~~~~---~~rILV~A~SN~AvD~l~~rL~~~~~--~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~ 93 (208)
+|+|++-+ +.+.+...+ +.++||.+||..-+.++...+.+..+ +..+..+.....
T Consensus 274 sGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~------------------ 335 (936)
T 4a2w_A 274 SGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENF------------------ 335 (936)
T ss_dssp SCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC--------------------
T ss_pred chHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcc------------------
Confidence 45676543 333333333 67999999999999999888876432 222222221100
Q ss_pred CccCcchHHHhccCcEEEEcccccchhhcC-CC-CCCCCcEEEEecCCCCCchhh
Q 037641 94 ECFQLPSLQELMRFRVIFSTFTSSFRLHNE-GI-PAGHFSHIFLLDASSATEPET 146 (208)
Q Consensus 94 ~~~~~~~~~~l~~~~Vv~~T~~~a~~l~~~-~~-~~~~Fd~vIIDEAsQa~Epe~ 146 (208)
............+|+++|.......... .+ ....|++||||||-.+.....
T Consensus 336 --~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~ 388 (936)
T 4a2w_A 336 --SNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP 388 (936)
T ss_dssp -----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH
T ss_pred --hhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCcc
Confidence 0000112234689999997754432221 12 234689999999988776643
No 55
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=95.07 E-value=0.025 Score=51.81 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=29.2
Q ss_pred chhHHHHHHHHHHHHcCCCCeEEEECCChHHHHHHHHHhhh
Q 037641 20 KTGLVVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKK 60 (208)
Q Consensus 20 ~t~~Tive~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~ 60 (208)
+||+|++-++-.+.. +.+|+|++||+.-++.+.+.+.+
T Consensus 36 GtGKT~~~l~~~~~~---~~~~~~~~~t~~l~~q~~~~~~~ 73 (540)
T 2vl7_A 36 GLGKTVFVEVLGMQL---KKKVLIFTRTHSQLDSIYKNAKL 73 (540)
T ss_dssp TSCHHHHHHHHHHHH---TCEEEEEESCHHHHHHHHHHHGG
T ss_pred CCcHHHHHHHHHHhC---CCcEEEEcCCHHHHHHHHHHHHh
Confidence 477898765554433 56999999999999999977764
No 56
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=94.99 E-value=0.035 Score=50.83 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=28.9
Q ss_pred chhHHHHHHHHHHHHcCCCCeEEEECCChHHHHHHHHHhhh
Q 037641 20 KTGLVVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKK 60 (208)
Q Consensus 20 ~t~~Tive~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~ 60 (208)
+||+|++-++-.+.. +.+|+|++||+.-++.+...+..
T Consensus 32 GtGKT~~~l~p~l~~---~~~v~i~~pt~~l~~q~~~~~~~ 69 (551)
T 3crv_A 32 GSGKTLFSLLVSLEV---KPKVLFVVRTHNEFYPIYRDLTK 69 (551)
T ss_dssp TSSHHHHHHHHHHHH---CSEEEEEESSGGGHHHHHHHHTT
T ss_pred CccHHHHHHHHHHhC---CCeEEEEcCCHHHHHHHHHHHHH
Confidence 477898776554442 57999999999999998866553
No 57
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=94.93 E-value=0.053 Score=54.23 Aligned_cols=103 Identities=10% Similarity=0.083 Sum_probs=58.3
Q ss_pred chhHHHHHHHHHHHHcCCCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCCCccCcc
Q 037641 20 KTGLVVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECFQLP 99 (208)
Q Consensus 20 ~t~~Tive~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~~~ 99 (208)
++|||++.+...+.....+.++||.+||..-+.....++.+.+.... ++++...+.. .. .. ...
T Consensus 634 GsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~-i~v~~l~~~~---~~-----------~~-~~~ 697 (1151)
T 2eyq_A 634 GFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWP-VRIEMISRFR---SA-----------KE-QTQ 697 (1151)
T ss_dssp CTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTT-CCEEEESTTS---CH-----------HH-HHH
T ss_pred CCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCC-CeEEEEeCCC---CH-----------HH-HHH
Confidence 35567765433322223477999999999999999999987654221 1222111100 00 00 000
Q ss_pred hHHHh--ccCcEEEEcccccchhhcCCCCCCCCcEEEEecCCCCC
Q 037641 100 SLQEL--MRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDASSAT 142 (208)
Q Consensus 100 ~~~~l--~~~~Vv~~T~~~a~~l~~~~~~~~~Fd~vIIDEAsQa~ 142 (208)
..+.+ .+.+|+++|-.. + ...+....+++||||||-...
T Consensus 698 ~~~~l~~g~~dIvV~T~~l---l-~~~~~~~~l~lvIiDEaH~~g 738 (1151)
T 2eyq_A 698 ILAEVAEGKIDILIGTHKL---L-QSDVKFKDLGLLIVDEEHRFG 738 (1151)
T ss_dssp HHHHHHTTCCSEEEECTHH---H-HSCCCCSSEEEEEEESGGGSC
T ss_pred HHHHHhcCCCCEEEECHHH---H-hCCccccccceEEEechHhcC
Confidence 11222 247899999642 2 223344678999999998753
No 58
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=94.57 E-value=0.12 Score=43.56 Aligned_cols=101 Identities=10% Similarity=0.039 Sum_probs=55.0
Q ss_pred chhHHHHHH---HHHHHHcCCCCeEEEECCChHHHHHHHHHhhhhC---CCCCeEEEeccccCCCCCCchhhccccccCC
Q 037641 20 KTGLVVREA---VLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKI---PKSDMFRANAAFREVDGVPVDILPLCLYEGG 93 (208)
Q Consensus 20 ~t~~Tive~---i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~~---~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~ 93 (208)
++|+|++-+ +.++....++.++||.+||..-+..+...+.+.. +...+.-+...
T Consensus 141 GsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~-------------------- 200 (300)
T 3fmo_B 141 GTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRG-------------------- 200 (300)
T ss_dssp TSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTT--------------------
T ss_pred CCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCC--------------------
Confidence 466888643 2222233345689999999999998877766532 11111111000
Q ss_pred CccCcchHHHhccCcEEEEcccccchhhc--CCCCCCCCcEEEEecCCCCCc
Q 037641 94 ECFQLPSLQELMRFRVIFSTFTSSFRLHN--EGIPAGHFSHIFLLDASSATE 143 (208)
Q Consensus 94 ~~~~~~~~~~l~~~~Vv~~T~~~a~~l~~--~~~~~~~Fd~vIIDEAsQa~E 143 (208)
..+.. ......+|+++|......+.. ..+....++++|||||-.+.+
T Consensus 201 ~~~~~---~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~ 249 (300)
T 3fmo_B 201 NKLER---GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIA 249 (300)
T ss_dssp CCCCT---TCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHH
T ss_pred ccHhh---hhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhh
Confidence 00000 001346899999754332221 122334789999999987554
No 59
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.40 E-value=0.073 Score=42.91 Aligned_cols=86 Identities=13% Similarity=0.177 Sum_probs=47.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCCCccCcchHHHhccCcEEEEccccc
Q 037641 38 KCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECFQLPSLQELMRFRVIFSTFTSS 117 (208)
Q Consensus 38 ~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~Vv~~T~~~a 117 (208)
+.++++.+|+...+..+.+++.+.+...--..+|...+ +. . ...-.+.+|+++|-...
T Consensus 109 ~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~-----------~~-----~------~~~~~~~~Ivv~Tpg~l 166 (235)
T 3llm_A 109 ECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVR-----------FE-----S------ILPRPHASIMFCTVGVL 166 (235)
T ss_dssp GCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEET-----------TE-----E------ECCCSSSEEEEEEHHHH
T ss_pred ceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeec-----------hh-----h------ccCCCCCeEEEECHHHH
Confidence 34899999999999999888876543210000111000 00 0 00002468999986322
Q ss_pred chhhcCCCCCCCCcEEEEecCCCC-Cchhhh
Q 037641 118 FRLHNEGIPAGHFSHIFLLDASSA-TEPETM 147 (208)
Q Consensus 118 ~~l~~~~~~~~~Fd~vIIDEAsQa-~Epe~l 147 (208)
.+..... ..+++++|||||-.. ...+.+
T Consensus 167 ~~~l~~~--l~~~~~lVlDEah~~~~~~~~~ 195 (235)
T 3llm_A 167 LRKLEAG--IRGISHVIVDEIHERDINTDFL 195 (235)
T ss_dssp HHHHHHC--CTTCCEEEECCTTSCCHHHHHH
T ss_pred HHHHHhh--hcCCcEEEEECCccCCcchHHH
Confidence 2211112 347899999999774 444433
No 60
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.37 E-value=0.076 Score=51.06 Aligned_cols=100 Identities=10% Similarity=0.101 Sum_probs=57.4
Q ss_pred chhHHHHHHH--HHHHHcCCCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCCCccC
Q 037641 20 KTGLVVREAV--LEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECFQ 97 (208)
Q Consensus 20 ~t~~Tive~i--~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~ 97 (208)
++|+|++-++ ++.+.. +.+++|.+||..-+..+.+++.+.+.... +++...... ....- .
T Consensus 399 GSGKTlvall~il~~l~~--g~qvlvlaPtr~La~Q~~~~l~~~~~~~g-i~v~~l~G~---~~~~~------------r 460 (780)
T 1gm5_A 399 GSGKTVVAQLAILDNYEA--GFQTAFMVPTSILAIQHYRRTVESFSKFN-IHVALLIGA---TTPSE------------K 460 (780)
T ss_dssp SSSHHHHHHHHHHHHHHH--TSCEEEECSCHHHHHHHHHHHHHHHTCSS-CCEEECCSS---SCHHH------------H
T ss_pred CCCHHHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHHHhhhcC-ceEEEEeCC---CCHHH------------H
Confidence 3567877543 344443 67999999999999999999887543211 122211100 00000 0
Q ss_pred cchHHHh--ccCcEEEEcccccchhhcCCCCCCCCcEEEEecCCCC
Q 037641 98 LPSLQEL--MRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDASSA 141 (208)
Q Consensus 98 ~~~~~~l--~~~~Vv~~T~~~a~~l~~~~~~~~~Fd~vIIDEAsQa 141 (208)
....+.+ .+.+|+++|-.. +.. .+....+++||||||-..
T Consensus 461 ~~~~~~l~~g~~~IvVgT~~l---l~~-~~~~~~l~lVVIDEaHr~ 502 (780)
T 1gm5_A 461 EKIKSGLRNGQIDVVIGTHAL---IQE-DVHFKNLGLVIIDEQHRF 502 (780)
T ss_dssp HHHHHHHHSSCCCEEEECTTH---HHH-CCCCSCCCEEEEESCCCC
T ss_pred HHHHHHHhcCCCCEEEECHHH---Hhh-hhhccCCceEEecccchh
Confidence 0011222 247999999642 221 234457899999999764
No 61
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=94.34 E-value=0.18 Score=44.63 Aligned_cols=101 Identities=12% Similarity=0.080 Sum_probs=54.1
Q ss_pred chhHHHHHHH--HHHH-HcCCCCeEEEECCChHHHHHHHHHhhhh---CCCCCeEEEeccccCCCCCCchhhccccccCC
Q 037641 20 KTGLVVREAV--LEIY-KRSSKCRILVCAPINRTGDVLMRSLKKK---IPKSDMFRANAAFREVDGVPVDILPLCLYEGG 93 (208)
Q Consensus 20 ~t~~Tive~i--~ql~-~~~~~~rILV~A~SN~AvD~l~~rL~~~---~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~ 93 (208)
++|+|++-.+ ++.+ ...++.++||.+||..-+..+..++.+. .+...+. +...... . ...
T Consensus 141 GsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~-~~~~~~~---~----------~~~ 206 (479)
T 3fmp_B 141 GTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLA-YAVRGNK---L----------ERG 206 (479)
T ss_dssp SSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEE-EESTTCC---C----------CTT
T ss_pred CCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEE-EEeCCcc---c----------ccc
Confidence 3568876432 2222 2223448999999999999987776542 1111111 1110000 0 000
Q ss_pred CccCcchHHHhccCcEEEEcccccchhh-c-CCCCCCCCcEEEEecCCCCCc
Q 037641 94 ECFQLPSLQELMRFRVIFSTFTSSFRLH-N-EGIPAGHFSHIFLLDASSATE 143 (208)
Q Consensus 94 ~~~~~~~~~~l~~~~Vv~~T~~~a~~l~-~-~~~~~~~Fd~vIIDEAsQa~E 143 (208)
. -...+|+++|......+. . ..+....+++||||||-.+.+
T Consensus 207 ~---------~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~ 249 (479)
T 3fmp_B 207 Q---------KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIA 249 (479)
T ss_dssp C---------CCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHT
T ss_pred c---------cCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhh
Confidence 0 123589999976543322 1 123335789999999986543
No 62
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=94.24 E-value=0.093 Score=49.21 Aligned_cols=98 Identities=14% Similarity=0.080 Sum_probs=55.0
Q ss_pred hhHHHHH--HHHHHHHcCCCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCCCccCc
Q 037641 21 TGLVVRE--AVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECFQL 98 (208)
Q Consensus 21 t~~Tive--~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~~ 98 (208)
.|||++- .+++.+.. +.++++.+|+...+.....++. .+.... ++++..... . . . .
T Consensus 51 sGKT~~~~l~il~~~~~--~~~~l~i~P~r~La~q~~~~~~-~~~~~g-~~v~~~~G~---~----~---~---~----- 108 (702)
T 2p6r_A 51 AGKTLLAEMAMVREAIK--GGKSLYVVPLRALAGEKYESFK-KWEKIG-LRIGISTGD---Y----E---S---R----- 108 (702)
T ss_dssp HHHHHHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHHT-TTTTTT-CCEEEECSS---C----B---C---C-----
T ss_pred cHHHHHHHHHHHHHHHh--CCcEEEEeCcHHHHHHHHHHHH-HHHhcC-CEEEEEeCC---C----C---c---c-----
Confidence 4577764 34444443 6799999999999999999984 222111 122211000 0 0 0 0
Q ss_pred chHHHhccCcEEEEcccccchhhcCCCC-CCCCcEEEEecCCCCC
Q 037641 99 PSLQELMRFRVIFSTFTSSFRLHNEGIP-AGHFSHIFLLDASSAT 142 (208)
Q Consensus 99 ~~~~~l~~~~Vv~~T~~~a~~l~~~~~~-~~~Fd~vIIDEAsQa~ 142 (208)
.+.+.+++|+++|-.....+...... ...+++||||||-...
T Consensus 109 --~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~ 151 (702)
T 2p6r_A 109 --DEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLD 151 (702)
T ss_dssp --SSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGG
T ss_pred --hhhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecC
Confidence 01124689999997543322221111 2368999999998754
No 63
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=94.06 E-value=0.028 Score=52.59 Aligned_cols=40 Identities=8% Similarity=0.159 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHc--CCCCeEEEECCChHHHHHHHHHhhhhCC
Q 037641 24 VVREAVLEIYKR--SSKCRILVCAPINRTGDVLMRSLKKKIP 63 (208)
Q Consensus 24 Tive~i~ql~~~--~~~~rILV~A~SN~AvD~l~~rL~~~~~ 63 (208)
|+++.|.+++.. .+..+||++|.||.|++++-+|+.+.++
T Consensus 31 ~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 31 VITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp HHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 577888888764 3457999999999999999999987654
No 64
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=93.44 E-value=0.12 Score=48.43 Aligned_cols=100 Identities=9% Similarity=0.118 Sum_probs=55.0
Q ss_pred hhHHHHH--HHHHHHHcCCCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCCCccCc
Q 037641 21 TGLVVRE--AVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECFQL 98 (208)
Q Consensus 21 t~~Tive--~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~~ 98 (208)
.|||++- .+++.+.. .+.+|++.+|+...+.....++.. +.... ++++..... . .
T Consensus 57 sGKT~~~~l~il~~~~~-~~~~il~i~P~r~La~q~~~~~~~-~~~~g-~~v~~~~G~--------------~--~---- 113 (715)
T 2va8_A 57 SGKTLIAEMGIISFLLK-NGGKAIYVTPLRALTNEKYLTFKD-WELIG-FKVAMTSGD--------------Y--D---- 113 (715)
T ss_dssp SCHHHHHHHHHHHHHHH-SCSEEEEECSCHHHHHHHHHHHGG-GGGGT-CCEEECCSC--------------S--S----
T ss_pred CcHHHHHHHHHHHHHHH-CCCeEEEEeCcHHHHHHHHHHHHH-hhcCC-CEEEEEeCC--------------C--C----
Confidence 4466653 33443332 367999999999999999999842 21100 122211000 0 0
Q ss_pred chHHHhccCcEEEEcccccchhhcCC-CCCCCCcEEEEecCCCCCc
Q 037641 99 PSLQELMRFRVIFSTFTSSFRLHNEG-IPAGHFSHIFLLDASSATE 143 (208)
Q Consensus 99 ~~~~~l~~~~Vv~~T~~~a~~l~~~~-~~~~~Fd~vIIDEAsQa~E 143 (208)
...+.+.+++|+++|-.....+.... .....+++||||||-....
T Consensus 114 ~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~ 159 (715)
T 2va8_A 114 TDDAWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLND 159 (715)
T ss_dssp SCCGGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGC
T ss_pred CchhhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCC
Confidence 00012346899999975433221111 1123689999999988543
No 65
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=93.40 E-value=0.065 Score=53.41 Aligned_cols=98 Identities=7% Similarity=0.090 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHHHcCCCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCCCccC--c
Q 037641 21 TGLVVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECFQ--L 98 (208)
Q Consensus 21 t~~Tive~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~--~ 98 (208)
+|+|++-+..-+.....+.++||.+||..-+..+..++.+ +.... ++++.... +.... .
T Consensus 104 SGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~-l~~~~-i~v~~l~G-----------------g~~~~er~ 164 (1104)
T 4ddu_A 104 VGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQK-LADEK-VKIFGFYS-----------------SMKKEEKE 164 (1104)
T ss_dssp CCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHT-TSCTT-SCEEEECT-----------------TCCTTHHH
T ss_pred CcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHH-hhCCC-CeEEEEeC-----------------CCCHHHHH
Confidence 5577754333222224578999999999999999999987 32111 11111000 00000 1
Q ss_pred chHHHhc--cCcEEEEcccccchhhcCCCCCCCCcEEEEecC
Q 037641 99 PSLQELM--RFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDA 138 (208)
Q Consensus 99 ~~~~~l~--~~~Vv~~T~~~a~~l~~~~~~~~~Fd~vIIDEA 138 (208)
...+.+. +.+|+++|-.....+.. .+....+++||||||
T Consensus 165 ~~~~~l~~g~~~IlV~Tp~rL~~~l~-~l~~~~l~~lViDEa 205 (1104)
T 4ddu_A 165 KFEKSFEEDDYHILVFSTQFVSKNRE-KLSQKRFDFVFVDDV 205 (1104)
T ss_dssp HHHHHHHTSCCSEEEEEHHHHHHSHH-HHHTSCCSEEEESCH
T ss_pred HHHHHHhCCCCCEEEECHHHHHHHHH-hhcccCcCEEEEeCC
Confidence 1122332 37999999754322111 123357999999999
No 66
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=93.29 E-value=0.064 Score=53.49 Aligned_cols=93 Identities=13% Similarity=0.105 Sum_probs=56.3
Q ss_pred hhHHHHH--HHHHHHHcCCCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCCCccCc
Q 037641 21 TGLVVRE--AVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECFQL 98 (208)
Q Consensus 21 t~~Tive--~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~~ 98 (208)
.|+|++- ++.+.+. .+.++||.+|+-..+.....++.+.++. ++.... .. . ..
T Consensus 210 SGKTlva~l~i~~~l~--~g~rvlvl~PtraLa~Q~~~~l~~~~~~-----VglltG---d~----~----~~------- 264 (1108)
T 3l9o_A 210 AGKTVVAEYAIAQSLK--NKQRVIYTSPIKALSNQKYRELLAEFGD-----VGLMTG---DI----T----IN------- 264 (1108)
T ss_dssp SHHHHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHHHHTSS-----EEEECS---SC----B----CC-------
T ss_pred CChHHHHHHHHHHHHh--cCCeEEEEcCcHHHHHHHHHHHHHHhCC-----ccEEeC---cc----c----cC-------
Confidence 5678774 3444444 3779999999999999999999886541 221000 00 0 00
Q ss_pred chHHHhccCcEEEEcccccch-hhcCCCCCCCCcEEEEecCCCCCch
Q 037641 99 PSLQELMRFRVIFSTFTSSFR-LHNEGIPAGHFSHIFLLDASSATEP 144 (208)
Q Consensus 99 ~~~~~l~~~~Vv~~T~~~a~~-l~~~~~~~~~Fd~vIIDEAsQa~Ep 144 (208)
.+++|+++|...... +.........+++||||||-.+...
T Consensus 265 ------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~ 305 (1108)
T 3l9o_A 265 ------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDK 305 (1108)
T ss_dssp ------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSH
T ss_pred ------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhcccc
Confidence 236889988643221 1111111235799999999987654
No 67
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=92.93 E-value=0.18 Score=47.41 Aligned_cols=100 Identities=11% Similarity=0.077 Sum_probs=55.3
Q ss_pred hhHHHHH--HHHHHHHcCCCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCCCccCc
Q 037641 21 TGLVVRE--AVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECFQL 98 (208)
Q Consensus 21 t~~Tive--~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~~ 98 (208)
.|||++- .+++.+.. .+.++++.+|+...+..+..++.+ +.+.. ++++..... .. ..
T Consensus 50 sGKT~~~~l~il~~~~~-~~~~~l~i~P~raLa~q~~~~~~~-l~~~g-~~v~~~~G~---~~--------------~~- 108 (720)
T 2zj8_A 50 SGKTLIAEIAMVHRILT-QGGKAVYIVPLKALAEEKFQEFQD-WEKIG-LRVAMATGD---YD--------------SK- 108 (720)
T ss_dssp GCHHHHHHHHHHHHHHH-HCSEEEEECSSGGGHHHHHHHTGG-GGGGT-CCEEEECSC---SS--------------CC-
T ss_pred cHHHHHHHHHHHHHHHh-CCCEEEEEcCcHHHHHHHHHHHHH-HHhcC-CEEEEecCC---CC--------------cc-
Confidence 4567653 23333321 267999999999999999999853 21110 112211000 00 00
Q ss_pred chHHHhccCcEEEEcccccchhhcCC-CCCCCCcEEEEecCCCCCc
Q 037641 99 PSLQELMRFRVIFSTFTSSFRLHNEG-IPAGHFSHIFLLDASSATE 143 (208)
Q Consensus 99 ~~~~~l~~~~Vv~~T~~~a~~l~~~~-~~~~~Fd~vIIDEAsQa~E 143 (208)
.+.+.+++|+++|-.....+.... .....+++||||||-...+
T Consensus 109 --~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~ 152 (720)
T 2zj8_A 109 --DEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGS 152 (720)
T ss_dssp --CGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGC
T ss_pred --ccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCC
Confidence 012356899999975443221111 1124689999999986543
No 68
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=92.93 E-value=0.077 Score=48.57 Aligned_cols=108 Identities=14% Similarity=0.149 Sum_probs=55.0
Q ss_pred hhHHHHHH--HHHHHHcC-----CCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCC
Q 037641 21 TGLVVREA--VLEIYKRS-----SKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGG 93 (208)
Q Consensus 21 t~~Tive~--i~ql~~~~-----~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~ 93 (208)
+|+|++-+ +++.+... .+.++||.+||..-+..+...+.+..... .... .. .-.+. ..+
T Consensus 71 sGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~------~~~~---~~----~~~~~-~gg 136 (579)
T 3sqw_A 71 TGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMN------YGLK---KY----ACVSL-VGG 136 (579)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHC------GGGT---TS----CEEEE-CTT
T ss_pred cHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhc------cccc---ce----EEEEE-ECC
Confidence 56787543 33333221 23589999999999999988887632100 0000 00 00000 001
Q ss_pred CccCcchHHHh--ccCcEEEEcccccchhhcC--CCCCCCCcEEEEecCCCCCc
Q 037641 94 ECFQLPSLQEL--MRFRVIFSTFTSSFRLHNE--GIPAGHFSHIFLLDASSATE 143 (208)
Q Consensus 94 ~~~~~~~~~~l--~~~~Vv~~T~~~a~~l~~~--~~~~~~Fd~vIIDEAsQa~E 143 (208)
..+. ...+.+ ...+|+++|-......... ......+++||||||-.+.+
T Consensus 137 ~~~~-~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~ 189 (579)
T 3sqw_A 137 TDFR-AAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLE 189 (579)
T ss_dssp SCHH-HHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTS
T ss_pred ccHH-HHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhc
Confidence 1111 111222 2578999997543221110 01124689999999987654
No 69
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=92.81 E-value=0.093 Score=51.83 Aligned_cols=93 Identities=13% Similarity=0.090 Sum_probs=55.5
Q ss_pred hhHHHHH--HHHHHHHcCCCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCCCccCc
Q 037641 21 TGLVVRE--AVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECFQL 98 (208)
Q Consensus 21 t~~Tive--~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~~ 98 (208)
.|||++- ++.+.+. .+.++|+++|+..-+.....++.+..+ +++.... +....
T Consensus 112 SGKTlva~lai~~~l~--~g~rvL~l~PtkaLa~Q~~~~l~~~~~-----~vglltG-----------------d~~~~- 166 (1010)
T 2xgj_A 112 AGKTVVAEYAIAQSLK--NKQRVIYTSPIKALSNQKYRELLAEFG-----DVGLMTG-----------------DITIN- 166 (1010)
T ss_dssp SCHHHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHHHHHS-----CEEEECS-----------------SCEEC-
T ss_pred CChHHHHHHHHHHHhc--cCCeEEEECChHHHHHHHHHHHHHHhC-----CEEEEeC-----------------CCccC-
Confidence 4567763 3444444 368999999999999999999887543 2221100 00000
Q ss_pred chHHHhccCcEEEEcccccch-hhcCCCCCCCCcEEEEecCCCCCch
Q 037641 99 PSLQELMRFRVIFSTFTSSFR-LHNEGIPAGHFSHIFLLDASSATEP 144 (208)
Q Consensus 99 ~~~~~l~~~~Vv~~T~~~a~~-l~~~~~~~~~Fd~vIIDEAsQa~Ep 144 (208)
.+++|+++|...... +.........+++||||||-.+...
T Consensus 167 ------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~ 207 (1010)
T 2xgj_A 167 ------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDK 207 (1010)
T ss_dssp ------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCT
T ss_pred ------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhccc
Confidence 146889988643222 1111122346899999999876443
No 70
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=92.73 E-value=0.056 Score=51.25 Aligned_cols=39 Identities=10% Similarity=0.168 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHc--CCCCeEEEECCChHHHHHHHHHhhhhC
Q 037641 24 VVREAVLEIYKR--SSKCRILVCAPINRTGDVLMRSLKKKI 62 (208)
Q Consensus 24 Tive~i~ql~~~--~~~~rILV~A~SN~AvD~l~~rL~~~~ 62 (208)
||++.|.+++.. .+..+||+++.||.|++++-+|+.+.+
T Consensus 40 vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 40 VLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp HHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 477888888864 244799999999999999999998644
No 71
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=92.71 E-value=0.12 Score=50.85 Aligned_cols=94 Identities=10% Similarity=0.087 Sum_probs=54.6
Q ss_pred hhHHHHH--HHHHHHHcCCCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCCCccCc
Q 037641 21 TGLVVRE--AVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECFQL 98 (208)
Q Consensus 21 t~~Tive--~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~~ 98 (208)
+|+|++- .+.+++. ++.++||.+|+...+..+..++.+.+++..+.-+.+. . . ..
T Consensus 65 sGKTlv~~~~i~~~~~--~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~------~----~----~~------- 121 (997)
T 4a4z_A 65 AGKTVVAEYAIAMAHR--NMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGD------V----Q----IN------- 121 (997)
T ss_dssp SCSHHHHHHHHHHHHH--TTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSS------C----E----EC-------
T ss_pred CcHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCC------C----c----cC-------
Confidence 3466652 3444444 4679999999999999999999875532222211110 0 0 00
Q ss_pred chHHHhccCcEEEEcccccchhh-cCCCCCCCCcEEEEecCCCCCc
Q 037641 99 PSLQELMRFRVIFSTFTSSFRLH-NEGIPAGHFSHIFLLDASSATE 143 (208)
Q Consensus 99 ~~~~~l~~~~Vv~~T~~~a~~l~-~~~~~~~~Fd~vIIDEAsQa~E 143 (208)
.+++|+++|-....... ........+++||||||-....
T Consensus 122 ------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d 161 (997)
T 4a4z_A 122 ------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVND 161 (997)
T ss_dssp ------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCT
T ss_pred ------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccc
Confidence 23688888865322211 1111224689999999987654
No 72
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=92.70 E-value=0.087 Score=47.68 Aligned_cols=102 Identities=15% Similarity=0.154 Sum_probs=55.1
Q ss_pred hhHHHHHH--HHHHHHcCC-----CCeEEEECCChHHHHHHHHHhhhhCC------CCCeEEEeccccCCCCCCchhhcc
Q 037641 21 TGLVVREA--VLEIYKRSS-----KCRILVCAPINRTGDVLMRSLKKKIP------KSDMFRANAAFREVDGVPVDILPL 87 (208)
Q Consensus 21 t~~Tive~--i~ql~~~~~-----~~rILV~A~SN~AvD~l~~rL~~~~~------~~~i~Rv~~~~r~~~~~~~~l~~~ 87 (208)
+|+|++-. +++.+...+ +.++||.+||..-+..+..++.+... ......+
T Consensus 122 sGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~----------------- 184 (563)
T 3i5x_A 122 TGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSL----------------- 184 (563)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEE-----------------
T ss_pred CCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEE-----------------
Confidence 56787643 333333212 35899999999999999888876311 0111100
Q ss_pred ccccCCCccCcchHHHh--ccCcEEEEcccccchhhcC--CCCCCCCcEEEEecCCCCCc
Q 037641 88 CLYEGGECFQLPSLQEL--MRFRVIFSTFTSSFRLHNE--GIPAGHFSHIFLLDASSATE 143 (208)
Q Consensus 88 ~~~~~~~~~~~~~~~~l--~~~~Vv~~T~~~a~~l~~~--~~~~~~Fd~vIIDEAsQa~E 143 (208)
..+..+. ...+.+ ...+|+++|-.....+... ......+++||||||-.+.+
T Consensus 185 ---~g~~~~~-~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~ 240 (563)
T 3i5x_A 185 ---VGGTDFR-AAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLE 240 (563)
T ss_dssp ---CTTSCHH-HHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTS
T ss_pred ---ECCcCHH-HHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhc
Confidence 0011100 111222 3579999997643221110 01124689999999987654
No 73
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=92.28 E-value=0.15 Score=50.52 Aligned_cols=87 Identities=18% Similarity=0.155 Sum_probs=50.1
Q ss_pred CCCeEEEECCChHHHHHHHHHhhhhCCCCCe---EEEeccccCCCCCCchhhccccccCCCccCc--chHHHhccCcEEE
Q 037641 37 SKCRILVCAPINRTGDVLMRSLKKKIPKSDM---FRANAAFREVDGVPVDILPLCLYEGGECFQL--PSLQELMRFRVIF 111 (208)
Q Consensus 37 ~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i---~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~~--~~~~~l~~~~Vv~ 111 (208)
.+.++||.+||..-+..+..++.+......+ .+++.. .++..... ...+.+.+.+|++
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~-----------------~Gg~~~~~~~~~~~~l~~~~IlV 160 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYY-----------------HGRIPKREKENFMQNLRNFKIVI 160 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEEC-----------------CSSCCSHHHHHHHHSGGGCSEEE
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEE-----------------eCCCChhhHHHHHhhccCCCEEE
Confidence 4679999999999999999988764322111 011110 00000000 0123345589999
Q ss_pred EcccccchhhcCCCCCCCCcEEEEecCCCCCc
Q 037641 112 STFTSSFRLHNEGIPAGHFSHIFLLDASSATE 143 (208)
Q Consensus 112 ~T~~~a~~l~~~~~~~~~Fd~vIIDEAsQa~E 143 (208)
+|-.....+.. . -..++++|||||-.+.+
T Consensus 161 ~TP~~L~~~l~-~--L~~l~~lViDEah~~l~ 189 (1054)
T 1gku_B 161 TTTQFLSKHYR-E--LGHFDFIFVDDVDAILK 189 (1054)
T ss_dssp EEHHHHHHCST-T--SCCCSEEEESCHHHHHT
T ss_pred EcHHHHHHHHH-H--hccCCEEEEeChhhhhh
Confidence 99743332211 1 23789999999987554
No 74
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=91.81 E-value=0.69 Score=40.75 Aligned_cols=124 Identities=15% Similarity=0.191 Sum_probs=66.3
Q ss_pred cCCCCchhHHHHHHHHHHHHcCCCCeEEEECCChHHHHHHHHHhhhh---CCCCCeEEEeccccCCCCCCchhhcccccc
Q 037641 15 SDNLSKTGLVVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKK---IPKSDMFRANAAFREVDGVPVDILPLCLYE 91 (208)
Q Consensus 15 ~~~~~~t~~Tive~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~---~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~ 91 (208)
....|||......++..++. .++.+|+++|+|-..+..+..++... .+.. +| +.+... .
T Consensus 186 sRq~GKT~l~a~~~l~~a~~-~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~l--l~------------~~~~~~---~ 247 (385)
T 2o0j_A 186 SRQLGKTTVVAIFLAHFVCF-NKDKAVGILAHKGSMSAEVLDRTKQAIELLPDF--LQ------------PGIVEW---N 247 (385)
T ss_dssp CSSSCHHHHHHHHHHHHHHS-SSSCEEEEEESSHHHHHHHHHHHHHHHHHSCTT--TS------------CCEEEE---C
T ss_pred cCcCChhHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHHHHhChHh--hh------------hhhccC---C
Confidence 35667777655444443333 47889999999999998888776642 2210 00 000000 0
Q ss_pred CCCccCcchHHHhccCcEEEEcccccchhhcCCCCCCCCcEEEEecCCCCCc-hhhhHHHhhc-cc-CCceEEEEcCCCC
Q 037641 92 GGECFQLPSLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDASSATE-PETMIALTNL-AN-EHTTVILTGTPNN 168 (208)
Q Consensus 92 ~~~~~~~~~~~~l~~~~Vv~~T~~~a~~l~~~~~~~~~Fd~vIIDEAsQa~E-pe~liPL~~l-~~-~~~~vVLvGD~~Q 168 (208)
......+ ....+.+.+.+ .+.+ ...+++.+|+||++.... ++.+-.+... .. ...++++++=|.-
T Consensus 248 -~~~I~f~-----nGs~i~~lsa~-~~sl-----rG~~~~~viiDE~a~~~~~~el~~al~~~ls~~~~~kiiiiSTP~g 315 (385)
T 2o0j_A 248 -KGSIELD-----NGSSIGAYASS-PDAV-----RGNSFAMIYIEDCAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNG 315 (385)
T ss_dssp -SSEEEET-----TSCEEEEEECS-HHHH-----HTSCCSEEEEESGGGSTTHHHHHHHHHHHHHSTTCCEEEEEECCCS
T ss_pred -ccEEEeC-----CCCEEEEEECC-CCCc-----cCCCCCEEEechhhhcCCCHHHHHHHHHHhhcCCCCcEEEEeCCCC
Confidence 0000000 12344443332 1211 234689999999999875 4544433311 11 3468888887753
No 75
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=90.67 E-value=0.39 Score=50.05 Aligned_cols=103 Identities=16% Similarity=0.093 Sum_probs=59.5
Q ss_pred hhHHHHH--HHHHHHHcCCCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCCCccCc
Q 037641 21 TGLVVRE--AVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECFQL 98 (208)
Q Consensus 21 t~~Tive--~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~~ 98 (208)
.|+|++. +|++.+.+.++.|+++.+|+-+-+......+.+.+.+.--++++... |+ . .
T Consensus 953 SGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~lt------------------Gd-~-~ 1012 (1724)
T 4f92_B 953 SGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLT------------------GE-T-S 1012 (1724)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECC------------------SC-H-H
T ss_pred CCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEE------------------CC-C-C
Confidence 3456553 45666665677899999999999999888877644321111222110 00 0 0
Q ss_pred chHHHhccCcEEEEcccccchhhcCCCC---CCCCcEEEEecCCCCCc
Q 037641 99 PSLQELMRFRVIFSTFTSSFRLHNEGIP---AGHFSHIFLLDASSATE 143 (208)
Q Consensus 99 ~~~~~l~~~~Vv~~T~~~a~~l~~~~~~---~~~Fd~vIIDEAsQa~E 143 (208)
...+.+.+++|++||--....+...... -....+|||||+-...+
T Consensus 1013 ~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d 1060 (1724)
T 4f92_B 1013 TDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG 1060 (1724)
T ss_dssp HHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS
T ss_pred cchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC
Confidence 1233456789999996532211111001 12578999999987654
No 76
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=89.52 E-value=1.5 Score=38.74 Aligned_cols=39 Identities=26% Similarity=0.332 Sum_probs=26.3
Q ss_pred CchhHHHHHHHHHHHHcCCCCeEEEECCChHHHHHHHHHhh
Q 037641 19 SKTGLVVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSLK 59 (208)
Q Consensus 19 ~~t~~Tive~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~ 59 (208)
|||..-+..++.+++.. +.++||++||..-++.+.+.+.
T Consensus 31 GKT~~~~~~~l~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~ 69 (451)
T 2jlq_A 31 GKTKRILPSIVREALLR--RLRTLILAPTRVVAAEMEEALR 69 (451)
T ss_dssp SCCTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT
T ss_pred CHhhHHHHHHHHHHHhc--CCcEEEECCCHHHHHHHHHHhc
Confidence 34433234444455553 6799999999998888887764
No 77
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=88.77 E-value=1.2 Score=39.62 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=23.4
Q ss_pred HHHHHHHHcCCCCeEEEECCChHHHHHHHHHhh
Q 037641 27 EAVLEIYKRSSKCRILVCAPINRTGDVLMRSLK 59 (208)
Q Consensus 27 e~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~ 59 (208)
-++..+.. .+.++||++||..-++.+.+++.
T Consensus 41 ~il~~~~~--~~~~~lvl~Ptr~La~Q~~~~l~ 71 (459)
T 2z83_A 41 QIIKDAIQ--QRLRTAVLAPTRVVAAEMAEALR 71 (459)
T ss_dssp HHHHHHHH--TTCCEEEEECSHHHHHHHHHHTT
T ss_pred HHHHHHHh--CCCcEEEECchHHHHHHHHHHhc
Confidence 33444444 36799999999999999888875
No 78
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=88.71 E-value=0.44 Score=44.37 Aligned_cols=41 Identities=5% Similarity=0.126 Sum_probs=28.3
Q ss_pred CCCcEEEEecCCCCCchhhhHHHhhcccCCceEEEEcCCCCC
Q 037641 128 GHFSHIFLLDASSATEPETMIALTNLANEHTTVILTGTPNNR 169 (208)
Q Consensus 128 ~~Fd~vIIDEAsQa~Epe~liPL~~l~~~~~~vVLvGD~~QL 169 (208)
..|++|+|||+-..+..+. --+..+.....++++|||++|-
T Consensus 206 ~~~~~ilVDEfQDt~~~Q~-~ll~~L~~~~~~l~~vGD~~Qs 246 (673)
T 1uaa_A 206 NKIRYLLVDEYQDTNTSQY-ELVKLLVGSRARFTVVGDDDQS 246 (673)
T ss_dssp TTCSEEEESCGGGCBHHHH-HHHHHHHTTTCCEEEECCGGGC
T ss_pred hhCcEEEEeccccCCHHHH-HHHHHHhcCCCeEEEEeCchhh
Confidence 4799999999966554433 2223233445789999999985
No 79
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=88.68 E-value=0.39 Score=45.95 Aligned_cols=90 Identities=11% Similarity=0.067 Sum_probs=50.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCCCccCcchHHHhccCcEEEEccccc
Q 037641 38 KCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECFQLPSLQELMRFRVIFSTFTSS 117 (208)
Q Consensus 38 ~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~Vv~~T~~~a 117 (208)
+.+|++.+|+..++..+..++.+.++..-...+|...+ +... .-.+.+|+++|-...
T Consensus 140 g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~-----------~~~~------------~~~~~~I~v~T~G~l 196 (773)
T 2xau_A 140 NTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIR-----------FENK------------TSNKTILKYMTDGML 196 (773)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEET-----------TEEE------------CCTTCSEEEEEHHHH
T ss_pred CceEEecCchHHHHHHHHHHHHHHhCCchhheecceec-----------cccc------------cCCCCCEEEECHHHH
Confidence 56899999999999999998877542110000111000 0000 012468888885433
Q ss_pred chhhcCCCCCCCCcEEEEecCCC-CCchhhhHHH
Q 037641 118 FRLHNEGIPAGHFSHIFLLDASS-ATEPETMIAL 150 (208)
Q Consensus 118 ~~l~~~~~~~~~Fd~vIIDEAsQ-a~Epe~liPL 150 (208)
.+..........+++||||||-. ....+.+..+
T Consensus 197 ~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~ 230 (773)
T 2xau_A 197 LREAMEDHDLSRYSCIILDEAHERTLATDILMGL 230 (773)
T ss_dssp HHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHH
T ss_pred HHHHhhCccccCCCEEEecCccccccchHHHHHH
Confidence 22111112235789999999985 5555544443
No 80
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=87.85 E-value=2.8 Score=38.50 Aligned_cols=46 Identities=15% Similarity=0.042 Sum_probs=32.8
Q ss_pred cCCCCchhHHHHHHHHHHHHcCCCCeEEEECCChHHHHHHHHHhhhh
Q 037641 15 SDNLSKTGLVVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKK 61 (208)
Q Consensus 15 ~~~~~~t~~Tive~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~ 61 (208)
....|||..+...++..++. .|+.+|+++|+|-..+..+..++...
T Consensus 186 ~Rq~GKS~~~a~~~l~~~~~-~~~~~i~~va~t~~qA~~~~~~i~~~ 231 (592)
T 3cpe_A 186 SRQLGKTTVVAIFLAHFVCF-NKDKAVGILAHKGSMSAEVLDRTKQA 231 (592)
T ss_dssp CSSSCHHHHHHHHHHHHHHT-SSSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred cCccChHHHHHHHHHHHHHh-CCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 34667777655444444443 47789999999999999888777653
No 81
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=87.44 E-value=0.34 Score=38.69 Aligned_cols=41 Identities=17% Similarity=0.243 Sum_probs=29.8
Q ss_pred cEEEEecCCCCCchhhhHHHhhcccCCceEEEEcCCCCCCc
Q 037641 131 SHIFLLDASSATEPETMIALTNLANEHTTVILTGTPNNRTS 171 (208)
Q Consensus 131 d~vIIDEAsQa~Epe~liPL~~l~~~~~~vVLvGD~~QL~P 171 (208)
+++|||||.++.-=|++-=+-......-|+||.||..|.+-
T Consensus 123 s~lIVD~AekLS~kE~~~Lld~A~~~naqvvll~~~~RqG~ 163 (189)
T 2l8b_A 123 STVIVDQGEKLSLKETLTLLDGAARHNVQVLITDSGQRTGT 163 (189)
T ss_dssp CEEEEEESSSHHHHHHHHHHHHHHHTTCCEEEEESSTTTCS
T ss_pred CEEEEechhhcCHHHHHHHHHHHHhcCCEEEEeCCcccccC
Confidence 59999999998765553322222224589999999999986
No 82
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=86.51 E-value=2.9 Score=39.40 Aligned_cols=88 Identities=8% Similarity=0.080 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHHHcCCCCeEEEECCChHHHHHHHHHhhhhCCCCCeE-EEeccccCCCCCCchhhccccccCCCccCcc
Q 037641 21 TGLVVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMF-RANAAFREVDGVPVDILPLCLYEGGECFQLP 99 (208)
Q Consensus 21 t~~Tive~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~-Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~~~ 99 (208)
+|||. -++..+... .+.++++|+-..+..+.+++.+. +..+. ..|...+ +.. ..+
T Consensus 166 SGKT~-~al~~l~~~---~~gl~l~PtR~LA~Qi~~~l~~~--g~~v~lltG~~~~-----------iv~-TpG------ 221 (677)
T 3rc3_A 166 SGKTY-HAIQKYFSA---KSGVYCGPLKLLAHEIFEKSNAA--GVPCDLVTGEERV-----------TVQ-PNG------ 221 (677)
T ss_dssp SSHHH-HHHHHHHHS---SSEEEEESSHHHHHHHHHHHHHT--TCCEEEECSSCEE-----------CCS-TTC------
T ss_pred CCHHH-HHHHHHHhc---CCeEEEeCHHHHHHHHHHHHHhc--CCcEEEEECCeeE-----------Eec-CCC------
Confidence 45777 333334443 34589999999999999998763 12111 1111100 000 000
Q ss_pred hHHHhccCcEEEEcccccchhhcCCCCCCCCcEEEEecCCCCCch
Q 037641 100 SLQELMRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDASSATEP 144 (208)
Q Consensus 100 ~~~~l~~~~Vv~~T~~~a~~l~~~~~~~~~Fd~vIIDEAsQa~Ep 144 (208)
..++++.+|..... ....|++||||||-....+
T Consensus 222 -----r~~~il~~T~e~~~-------l~~~v~lvVIDEaH~l~d~ 254 (677)
T 3rc3_A 222 -----KQASHVSCTVEMCS-------VTTPYEVAVIDEIQMIRDP 254 (677)
T ss_dssp -----CCCSEEEEEGGGCC-------SSSCEEEEEECSGGGGGCT
T ss_pred -----cccceeEecHhHhh-------hcccCCEEEEecceecCCc
Confidence 23577887753221 1246899999999887554
No 83
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=84.65 E-value=0.88 Score=42.95 Aligned_cols=40 Identities=13% Similarity=0.256 Sum_probs=27.5
Q ss_pred CCcEEEEecCCCCCchhhhHHHhhcccCCceEEEEcCCCCC
Q 037641 129 HFSHIFLLDASSATEPETMIALTNLANEHTTVILTGTPNNR 169 (208)
Q Consensus 129 ~Fd~vIIDEAsQa~Epe~liPL~~l~~~~~~vVLvGD~~QL 169 (208)
.|++|+|||+-.....+. --+..++....++++|||++|-
T Consensus 216 rf~~IlVDEfQDtn~~Q~-~ll~~L~~~~~~l~vVGD~~Qs 255 (724)
T 1pjr_A 216 KFQYIHIDEYQDTNRAQY-TLVKKLAERFQNICAVGDADQS 255 (724)
T ss_dssp HCSEEEESSGGGCCHHHH-HHHHHHHTTTCCEEEEECGGGC
T ss_pred hCCEEEEEhHhcCCHHHH-HHHHHHHcCCCeEEEEECchhh
Confidence 699999999966554433 2222233345689999999985
No 84
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=84.17 E-value=4.1 Score=37.79 Aligned_cols=37 Identities=27% Similarity=0.365 Sum_probs=26.3
Q ss_pred hhHHHH---HHHHHHHHcCCCCeEEEECCChHHHHHHHHHhh
Q 037641 21 TGLVVR---EAVLEIYKRSSKCRILVCAPINRTGDVLMRSLK 59 (208)
Q Consensus 21 t~~Tiv---e~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~ 59 (208)
+|||++ .++..+.. .+.++||++||..-++.+.+.+.
T Consensus 197 SGKT~~~~lpil~~l~~--~~~~vLvl~PtreLa~Qi~~~l~ 236 (618)
T 2whx_A 197 AGKTKRILPSIVREALK--RRLRTLILAPTRVVAAEMEEALR 236 (618)
T ss_dssp SSTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHh--CCCeEEEEcChHHHHHHHHHHhc
Confidence 345543 34445555 36799999999999999887775
No 85
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=84.16 E-value=1.9 Score=42.76 Aligned_cols=124 Identities=12% Similarity=0.104 Sum_probs=68.1
Q ss_pred chhHHHHHH-HHHHHHcCC-CCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCCCccC
Q 037641 20 KTGLVVREA-VLEIYKRSS-KCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECFQ 97 (208)
Q Consensus 20 ~t~~Tive~-i~ql~~~~~-~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~ 97 (208)
++|+|++-+ +.+++...+ ..+|||.+|++.=++.+...+.+..+ ..+ ... .+ ...
T Consensus 310 GSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~f~~f~~-~~v---~~~----~s-~~~-------------- 366 (1038)
T 2w00_A 310 GSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKEYQRFSP-DSV---NGS----EN-TAG-------------- 366 (1038)
T ss_dssp TSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHHHHTTST-TCS---SSS----CC-CHH--------------
T ss_pred CCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHHHHHhcc-ccc---ccc----cC-HHH--------------
Confidence 456666642 224443322 36999999999988888777765322 110 000 00 000
Q ss_pred cchHHHh--ccCcEEEEcccccchhhc-CC-C-CCCCCcEEEEecCCCCCchhhhHHHhhcccCCceEEEEcCCCC
Q 037641 98 LPSLQEL--MRFRVIFSTFTSSFRLHN-EG-I-PAGHFSHIFLLDASSATEPETMIALTNLANEHTTVILTGTPNN 168 (208)
Q Consensus 98 ~~~~~~l--~~~~Vv~~T~~~a~~l~~-~~-~-~~~~Fd~vIIDEAsQa~Epe~liPL~~l~~~~~~vVLvGD~~Q 168 (208)
..+.+ ...+||++|......... .. + ....+++||||||-.+.-...+--+....+....+-|-|=|..
T Consensus 367 --l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~~~~~~I~~~~p~a~~lgfTATP~~ 440 (1038)
T 2w00_A 367 --LKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFGEAQKNLKKKFKRYYQFGFTGTPIF 440 (1038)
T ss_dssp --HHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHHHHHHHHHHHCSSEEEEEEESSCCC
T ss_pred --HHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcchHHHHHHHHhCCcccEEEEeCCccc
Confidence 01122 247899999876543211 11 1 1236899999999997654443334322233456777777753
No 86
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=84.01 E-value=0.86 Score=37.00 Aligned_cols=38 Identities=16% Similarity=0.072 Sum_probs=24.4
Q ss_pred CCCCcEEEEecCCCCCchhhhHHHhhcccCCceEEEEcC
Q 037641 127 AGHFSHIFLLDASSATEPETMIALTNLANEHTTVILTGT 165 (208)
Q Consensus 127 ~~~Fd~vIIDEAsQa~Epe~liPL~~l~~~~~~vVLvGD 165 (208)
.+.+|+||||||--. .++.+--+..+.+....+|++|=
T Consensus 87 ~~~~dvViIDEaQ~l-~~~~ve~l~~L~~~gi~Vil~Gl 124 (223)
T 2b8t_A 87 NDETKVIGIDEVQFF-DDRICEVANILAENGFVVIISGL 124 (223)
T ss_dssp CTTCCEEEECSGGGS-CTHHHHHHHHHHHTTCEEEEECC
T ss_pred CCCCCEEEEecCccC-cHHHHHHHHHHHhCCCeEEEEec
Confidence 346899999999554 34432223333345678999995
No 87
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=83.12 E-value=4.1 Score=35.74 Aligned_cols=39 Identities=26% Similarity=0.367 Sum_probs=26.0
Q ss_pred CchhHHHHHHHHHHHHcCCCCeEEEECCChHHHHHHHHHhh
Q 037641 19 SKTGLVVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSLK 59 (208)
Q Consensus 19 ~~t~~Tive~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~ 59 (208)
|||-.-+..++..++.. +.++||.+||..-++.+.+.+.
T Consensus 14 GKT~~~l~~~l~~~~~~--g~~~lvl~Pt~~La~Q~~~~~~ 52 (431)
T 2v6i_A 14 GKTRRVLPQLVREAVKK--RLRTVILAPTRVVASEMYEALR 52 (431)
T ss_dssp CTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhC--CCCEEEECcHHHHHHHHHHHhC
Confidence 44443333344355553 6799999999999888777664
No 88
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=82.45 E-value=4.7 Score=39.10 Aligned_cols=100 Identities=8% Similarity=-0.002 Sum_probs=54.8
Q ss_pred chhHHHHHHHHHHHHcCCCCeEEEECCChHHHHHHHHHhhh---hCCCCCeEEEeccccCCCCCCchhhccccccCCCcc
Q 037641 20 KTGLVVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKK---KIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECF 96 (208)
Q Consensus 20 ~t~~Tive~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~---~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~ 96 (208)
++|+|++-++--++....+..++|.|||..=+....+.+.+ .++ . +++.-.. ..+.
T Consensus 106 GeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lg-l---~v~~i~g---g~~~-------------- 164 (844)
T 1tf5_A 106 GEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLG-L---TVGLNLN---SMSK-------------- 164 (844)
T ss_dssp TSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTT-C---CEEECCT---TSCH--------------
T ss_pred CcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcC-C---eEEEEeC---CCCH--------------
Confidence 46789987766555545678999999987655554444332 221 1 2221000 0110
Q ss_pred CcchHHHhccCcEEEEcccccch--hhcC------CCCCCCCcEEEEecCCCCC
Q 037641 97 QLPSLQELMRFRVIFSTFTSSFR--LHNE------GIPAGHFSHIFLLDASSAT 142 (208)
Q Consensus 97 ~~~~~~~l~~~~Vv~~T~~~a~~--l~~~------~~~~~~Fd~vIIDEAsQa~ 142 (208)
........+.|+++|-.-.+. +.+. .+....+.++|||||=.+.
T Consensus 165 --~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mL 216 (844)
T 1tf5_A 165 --DEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSIL 216 (844)
T ss_dssp --HHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHH
T ss_pred --HHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhh
Confidence 111222357999999754321 0110 1223578999999997753
No 89
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=80.77 E-value=1 Score=34.99 Aligned_cols=36 Identities=14% Similarity=0.240 Sum_probs=23.4
Q ss_pred CCcEEEEecCCCCCchhhhHHHhhcccCCceEEEEcC
Q 037641 129 HFSHIFLLDASSATEPETMIALTNLANEHTTVILTGT 165 (208)
Q Consensus 129 ~Fd~vIIDEAsQa~Epe~liPL~~l~~~~~~vVLvGD 165 (208)
.+|+||||||-... |+.+--|..+......+++.|=
T Consensus 76 ~~dvviIDE~Q~~~-~~~~~~l~~l~~~~~~Vi~~Gl 111 (184)
T 2orw_A 76 DTRGVFIDEVQFFN-PSLFEVVKDLLDRGIDVFCAGL 111 (184)
T ss_dssp TEEEEEECCGGGSC-TTHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCEEEEECcccCC-HHHHHHHHHHHHCCCCEEEEee
Confidence 58999999996653 4443333334344677888886
No 90
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=80.45 E-value=3.5 Score=40.02 Aligned_cols=100 Identities=8% Similarity=0.010 Sum_probs=54.9
Q ss_pred chhHHHHHHHHHHHHcCCCCeEEEECCChHHHHHHHHHhh---hhCCCCCeEEEeccccCCCCCCchhhccccccCCCcc
Q 037641 20 KTGLVVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSLK---KKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECF 96 (208)
Q Consensus 20 ~t~~Tive~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~---~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~ 96 (208)
++|+|++-++--++....+..++|.|||..=+..+.+.+. +.++ . +++.- +. +.
T Consensus 97 GsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lg-l---~v~~i----------------~G-G~-- 153 (853)
T 2fsf_A 97 GEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLG-L---TVGIN----------------LP-GM-- 153 (853)
T ss_dssp TSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTT-C---CEEEC----------------CT-TC--
T ss_pred CchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcC-C---eEEEE----------------eC-CC--
Confidence 4778998776555444457899999999765544444433 2221 1 22210 00 00
Q ss_pred CcchHHHhccCcEEEEcccccc-h-hhc-C-----CCCCCCCcEEEEecCCCCC
Q 037641 97 QLPSLQELMRFRVIFSTFTSSF-R-LHN-E-----GIPAGHFSHIFLLDASSAT 142 (208)
Q Consensus 97 ~~~~~~~l~~~~Vv~~T~~~a~-~-l~~-~-----~~~~~~Fd~vIIDEAsQa~ 142 (208)
.....+....+.|+++|-.-.+ . +.. . .+....+.++|||||-.+.
T Consensus 154 ~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mL 207 (853)
T 2fsf_A 154 PAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSIL 207 (853)
T ss_dssp CHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHT
T ss_pred CHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHH
Confidence 0011222335899999975432 1 111 1 1233578999999998765
No 91
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=78.96 E-value=4.1 Score=39.79 Aligned_cols=100 Identities=4% Similarity=-0.054 Sum_probs=54.8
Q ss_pred chhHHHHHHHHHHHHcCCCCeEEEECCChHHHHHHHHHhh---hhCCCCCeEEEeccccCCCCCCchhhccccccCCCcc
Q 037641 20 KTGLVVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSLK---KKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECF 96 (208)
Q Consensus 20 ~t~~Tive~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~---~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~ 96 (208)
++|+|++-++--++....+..++|.+||..=+-...+.+. +.++ . +++.-.. .++.
T Consensus 134 GeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lG-L---sv~~i~g---g~~~-------------- 192 (922)
T 1nkt_A 134 GEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLG-L---QVGVILA---TMTP-------------- 192 (922)
T ss_dssp TSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTT-C---CEEECCT---TCCH--------------
T ss_pred CCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcC-C---eEEEEeC---CCCH--------------
Confidence 4678998876655555567899999998765544333332 2221 1 2221100 0110
Q ss_pred CcchHHHhccCcEEEEcccccch--hhcC------CCCCCCCcEEEEecCCCCC
Q 037641 97 QLPSLQELMRFRVIFSTFTSSFR--LHNE------GIPAGHFSHIFLLDASSAT 142 (208)
Q Consensus 97 ~~~~~~~l~~~~Vv~~T~~~a~~--l~~~------~~~~~~Fd~vIIDEAsQa~ 142 (208)
...+....+.|+++|..-.+. +.+. .+....+.++|||||=.+.
T Consensus 193 --~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmL 244 (922)
T 1nkt_A 193 --DERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSIL 244 (922)
T ss_dssp --HHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHH
T ss_pred --HHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHH
Confidence 112223357999999764321 1110 1233578999999998664
No 92
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=76.90 E-value=7.4 Score=38.27 Aligned_cols=39 Identities=5% Similarity=-0.088 Sum_probs=27.8
Q ss_pred chhHHHHHHHHHHHHcCCCCeEEEECCChHHHHHHHHHh
Q 037641 20 KTGLVVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSL 58 (208)
Q Consensus 20 ~t~~Tive~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL 58 (208)
++|+|++-++--++....+..++|.|||..=+-...+.+
T Consensus 102 GeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m 140 (997)
T 2ipc_A 102 GEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWM 140 (997)
T ss_dssp THHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHH
Confidence 578999887766555556789999999876555444443
No 93
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=76.62 E-value=1.3 Score=44.39 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHcC----CCCeEEEECCChHHHHHHHHHhhh
Q 037641 24 VVREAVLEIYKRS----SKCRILVCAPINRTGDVLMRSLKK 60 (208)
Q Consensus 24 Tive~i~ql~~~~----~~~rILV~A~SN~AvD~l~~rL~~ 60 (208)
++++-|.+++... +..+||+.++||.|++.+-+|+.+
T Consensus 39 vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 39 VLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp HHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 4778888887652 346999999999999999999875
No 94
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=75.03 E-value=2.5 Score=42.40 Aligned_cols=40 Identities=8% Similarity=0.188 Sum_probs=28.0
Q ss_pred CCcEEEEecCCCCCchhhhHHHhhcccC---CceEEEEcCCCCC
Q 037641 129 HFSHIFLLDASSATEPETMIALTNLANE---HTTVILTGTPNNR 169 (208)
Q Consensus 129 ~Fd~vIIDEAsQa~Epe~liPL~~l~~~---~~~vVLvGD~~QL 169 (208)
.|++|+|||+--.+.... --|..+... ...+++|||++|-
T Consensus 400 ~~~~IlVDEfQDt~~~Q~-~il~~L~~~~~~~~~l~~vGD~~Qs 442 (1232)
T 3u4q_A 400 QFHEVLVDEYQDTNLVQE-SILQLVTSGPEETGNLFMVGDVKQS 442 (1232)
T ss_dssp HCSEEEESSGGGCCHHHH-HHHHHHSCSCTTSSCEEEEECGGGC
T ss_pred CCCEEEEEccccCCHHHH-HHHHHHhcCCCCCCcEEEEeCchHH
Confidence 499999999987775443 222323332 4689999999994
No 95
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=74.87 E-value=1.7 Score=43.46 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=33.6
Q ss_pred cCCCCchhHHHHHHHHHHHHcC----------CCCeEEEECCChHHHHHHHHHhhh
Q 037641 15 SDNLSKTGLVVREAVLEIYKRS----------SKCRILVCAPINRTGDVLMRSLKK 60 (208)
Q Consensus 15 ~~~~~~t~~Tive~i~ql~~~~----------~~~rILV~A~SN~AvD~l~~rL~~ 60 (208)
+-+-||| .||++.+++++... +-.+|||.|-||.|+.++-+|+.+
T Consensus 24 sAGSGKT-~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 24 SAGTGKT-FTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp CTTSCHH-HHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CCCCCHH-HHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 3344444 36899999988631 235899999999999999998764
No 96
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=73.62 E-value=3.4 Score=37.33 Aligned_cols=99 Identities=9% Similarity=0.009 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHHHcCCCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCCCccCcch
Q 037641 21 TGLVVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECFQLPS 100 (208)
Q Consensus 21 t~~Tive~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~~~~ 100 (208)
+|||++-.+-.+.. +.++||.+|+..-+.....++.+. +....-+++. ....-. ...
T Consensus 51 sGKTl~~~lp~l~~---~g~~lvi~P~~aL~~q~~~~l~~~--gi~~~~l~~~------~~~~~~------------~~~ 107 (523)
T 1oyw_A 51 GGKSLCYQIPALLL---NGLTVVVSPLISLMKDQVDQLQAN--GVAAACLNST------QTREQQ------------LEV 107 (523)
T ss_dssp HHHHHHHHHHHHHS---SSEEEEECSCHHHHHHHHHHHHHT--TCCEEEECTT------SCHHHH------------HHH
T ss_pred cHHHHHHHHHHHHh---CCCEEEECChHHHHHHHHHHHHHc--CCcEEEEeCC------CCHHHH------------HHH
Confidence 56888766554443 358999999999998888888752 1222222211 000000 000
Q ss_pred HHH--hccCcEEEEcccccchh-hcCCCCCCCCcEEEEecCCCCC
Q 037641 101 LQE--LMRFRVIFSTFTSSFRL-HNEGIPAGHFSHIFLLDASSAT 142 (208)
Q Consensus 101 ~~~--l~~~~Vv~~T~~~a~~l-~~~~~~~~~Fd~vIIDEAsQa~ 142 (208)
... -...+|+++|-...... ....+....++++|||||-...
T Consensus 108 ~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~ 152 (523)
T 1oyw_A 108 MTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCIS 152 (523)
T ss_dssp HHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGC
T ss_pred HHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccC
Confidence 111 13478888885432110 0001223578999999998764
No 97
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=73.10 E-value=3.6 Score=37.89 Aligned_cols=38 Identities=16% Similarity=0.090 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHcCCCCeEEEECCChHHHHHHHHHhhhh
Q 037641 21 TGLVVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKK 61 (208)
Q Consensus 21 t~~Tive~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~ 61 (208)
+|+|++-.+-.+.. +.++||.+|+..=+.....++.+.
T Consensus 70 sGKTl~~~lpal~~---~g~~lVisP~~~L~~q~~~~l~~~ 107 (591)
T 2v1x_A 70 GGKSLCYQLPALCS---DGFTLVICPLISLMEDQLMVLKQL 107 (591)
T ss_dssp SCTTHHHHHHHHTS---SSEEEEECSCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHc---CCcEEEEeCHHHHHHHHHHHHHhc
Confidence 45787654443332 459999999999988888888763
No 98
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=71.06 E-value=3.5 Score=32.40 Aligned_cols=43 Identities=14% Similarity=0.112 Sum_probs=27.9
Q ss_pred CCcEEEEecCCCCCchhhhHHHhhcccCCceEEEEcC--CCCCCcc
Q 037641 129 HFSHIFLLDASSATEPETMIALTNLANEHTTVILTGT--PNNRTSW 172 (208)
Q Consensus 129 ~Fd~vIIDEAsQa~Epe~liPL~~l~~~~~~vVLvGD--~~QL~P~ 172 (208)
.+|+||||||--.+ |+.+--+..+......+|+.|= .+|-.|+
T Consensus 81 ~~dvViIDEaqfl~-~~~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F 125 (191)
T 1xx6_A 81 DTEVIAIDEVQFFD-DEIVEIVNKIAESGRRVICAGLDMDFRGKPF 125 (191)
T ss_dssp TCSEEEECSGGGSC-THHHHHHHHHHHTTCEEEEEECSBCTTSCBC
T ss_pred cCCEEEEECCCCCC-HHHHHHHHHHHhCCCEEEEEecccccccCcC
Confidence 58999999987754 4444334433445678999985 3454444
No 99
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=69.75 E-value=3.7 Score=33.36 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=22.5
Q ss_pred CCCcEEEEecCCCCCchhhhHHHhhcccCCceEEEEc
Q 037641 128 GHFSHIFLLDASSATEPETMIALTNLANEHTTVILTG 164 (208)
Q Consensus 128 ~~Fd~vIIDEAsQa~Epe~liPL~~l~~~~~~vVLvG 164 (208)
+.+|+|+||||-..++ +.+--+..++.....|+.+|
T Consensus 100 ~~~dvV~IDEaQFf~~-~~v~~l~~la~~gi~Vi~~G 135 (219)
T 3e2i_A 100 TNVDVIGIDEVQFFDD-EIVSIVEKLSADGHRVIVAG 135 (219)
T ss_dssp TTCSEEEECCGGGSCT-HHHHHHHHHHHTTCEEEEEE
T ss_pred cCCCEEEEechhcCCH-HHHHHHHHHHHCCCEEEEee
Confidence 3689999999976653 33222332334567788776
No 100
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=68.11 E-value=4.5 Score=40.37 Aligned_cols=40 Identities=13% Similarity=0.264 Sum_probs=27.1
Q ss_pred CCcEEEEecCCCCCchhh--hHHHhhcccCCceEEEEcCCCCC
Q 037641 129 HFSHIFLLDASSATEPET--MIALTNLANEHTTVILTGTPNNR 169 (208)
Q Consensus 129 ~Fd~vIIDEAsQa~Epe~--liPL~~l~~~~~~vVLvGD~~QL 169 (208)
.|++|+|||.=-...... +-.|.. ......+++|||++|-
T Consensus 377 r~~~ilVDEfQDtn~~Q~~il~~L~~-~~~~~~l~~VGD~kQS 418 (1180)
T 1w36_B 377 RFPVAMIDEFQDTDPQQYRIFRRIWH-HQPETALLLIGDPKQA 418 (1180)
T ss_dssp HCSEEEECSGGGCCHHHHHHHHHHHT-TCTTCEEEEEECGGGC
T ss_pred CCCEEEEECCccCCHHHHHHHHHHHc-CCCCCeEEEEECCccc
Confidence 499999999977665433 222331 1134689999999994
No 101
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=65.74 E-value=19 Score=37.61 Aligned_cols=83 Identities=14% Similarity=0.126 Sum_probs=44.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCCCccCcchHHHhccCcEEEEccccc
Q 037641 38 KCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECFQLPSLQELMRFRVIFSTFTSS 117 (208)
Q Consensus 38 ~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~Vv~~T~~~a 117 (208)
+.|+++.+|+-+=+......+.+.+.... ++++.... + .. ...+.+..++|++||--..
T Consensus 134 ~~k~lyiaP~kALa~e~~~~l~~~~~~~g-i~V~~~tG------------------d-~~-~~~~~~~~~~IlVtTpEkl 192 (1724)
T 4f92_B 134 DFKIIYIAPMRSLVQEMVGSFGKRLATYG-ITVAELTG------------------D-HQ-LCKEEISATQIIVCTPEKW 192 (1724)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHHHTTTT-CCEEECCS------------------S-CS-SCCTTGGGCSEEEECHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHhhCC-CEEEEEEC------------------C-CC-CCccccCCCCEEEECHHHH
Confidence 56888888888777777777765443222 12221100 0 00 0012245689999996532
Q ss_pred chhhcCCCC---CCCCcEEEEecCCCC
Q 037641 118 FRLHNEGIP---AGHFSHIFLLDASSA 141 (208)
Q Consensus 118 ~~l~~~~~~---~~~Fd~vIIDEAsQa 141 (208)
..+...... -....+|||||+-..
T Consensus 193 d~llr~~~~~~~l~~v~~vIiDEvH~l 219 (1724)
T 4f92_B 193 DIITRKGGERTYTQLVRLIILDEIHLL 219 (1724)
T ss_dssp HHHTTSSTTHHHHTTEEEEEETTGGGG
T ss_pred HHHHcCCccchhhcCcCEEEEecchhc
Confidence 211111100 135789999999543
No 102
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=61.79 E-value=6.5 Score=31.70 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=24.1
Q ss_pred CCcEEEEecCCCCCchhhhHHHhhcccCCceEEEEcC
Q 037641 129 HFSHIFLLDASSATEPETMIALTNLANEHTTVILTGT 165 (208)
Q Consensus 129 ~Fd~vIIDEAsQa~Epe~liPL~~l~~~~~~vVLvGD 165 (208)
.+|+|+||||--.++ +.+--+..+......+|+.|=
T Consensus 101 ~~dvViIDEaQF~~~-~~V~~l~~l~~~~~~Vi~~Gl 136 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDG-DIVEVVQVLANRGYRVIVAGL 136 (214)
T ss_dssp SCCEEEECCGGGSCT-THHHHHHHHHHTTCEEEEEEC
T ss_pred CCCEEEEECcccCCH-HHHHHHHHHhhCCCEEEEEec
Confidence 589999999987653 333223333445678999986
No 103
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=60.29 E-value=11 Score=29.89 Aligned_cols=40 Identities=25% Similarity=0.254 Sum_probs=27.1
Q ss_pred CCCCCcEEEEecC------CCCCchhhhHHHhhcccCCceEEEEcCC
Q 037641 126 PAGHFSHIFLLDA------SSATEPETMIALTNLANEHTTVILTGTP 166 (208)
Q Consensus 126 ~~~~Fd~vIIDEA------sQa~Epe~liPL~~l~~~~~~vVLvGD~ 166 (208)
..+.||+||+||. +...+++.+--|. -......+|+.|-.
T Consensus 117 ~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~-~Rp~~~~vIlTGr~ 162 (196)
T 1g5t_A 117 ADPLLDMVVLDELTYMVAYDYLPLEEVISALN-ARPGHQTVIITGRG 162 (196)
T ss_dssp TCTTCSEEEEETHHHHHHTTSSCHHHHHHHHH-TSCTTCEEEEECSS
T ss_pred hcCCCCEEEEeCCCccccCCCCCHHHHHHHHH-hCcCCCEEEEECCC
Confidence 3467999999999 5566666444333 33455788888865
No 104
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=60.04 E-value=42 Score=32.32 Aligned_cols=33 Identities=3% Similarity=-0.100 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHcCCCCeEEEECCChHHHHH
Q 037641 21 TGLVVREAVLEIYKRSSKCRILVCAPINRTGDV 53 (208)
Q Consensus 21 t~~Tive~i~ql~~~~~~~rILV~A~SN~AvD~ 53 (208)
.|+|++.++--++.+..|+.|.|++|+..=+-.
T Consensus 99 EGKTLva~lp~~lnAL~G~~vhVvT~ndyLA~r 131 (822)
T 3jux_A 99 EGKTLAATMPIYLNALIGKGVHLVTVNDYLARR 131 (822)
T ss_dssp SCHHHHTHHHHHHHHTTSSCEEEEESSHHHHHH
T ss_pred CCccHHHHHHHHHHHhcCCceEEEeccHHHHHh
Confidence 558999888777777779999999998654443
No 105
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=58.95 E-value=8.7 Score=36.25 Aligned_cols=39 Identities=15% Similarity=0.168 Sum_probs=25.5
Q ss_pred CCCcEEEEecCCCCCchhhhHHHhhcccCCceEEEEcCCCCCC
Q 037641 128 GHFSHIFLLDASSATEPETMIALTNLANEHTTVILTGTPNNRT 170 (208)
Q Consensus 128 ~~Fd~vIIDEAsQa~Epe~liPL~~l~~~~~~vVLvGD~~QL~ 170 (208)
.+.|++|||||+...-|-. --|. ....+++|+..-.+..
T Consensus 254 ~~~dlliVDEAAaIp~pll-~~ll---~~~~~v~~~tTv~GYE 292 (671)
T 2zpa_A 254 EQADWLVVDEAAAIPAPLL-HQLV---SRFPRTLLTTTVQGYE 292 (671)
T ss_dssp CCCSEEEEETGGGSCHHHH-HHHH---TTSSEEEEEEEBSSTT
T ss_pred ccCCEEEEEchhcCCHHHH-HHHH---hhCCeEEEEecCCcCC
Confidence 3589999999998864432 1122 2446888887655544
No 106
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=52.69 E-value=11 Score=30.74 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=24.4
Q ss_pred CCcEEEEecCCCCCchhhhHHHhhc-ccCCceEEEEcCC
Q 037641 129 HFSHIFLLDASSATEPETMIALTNL-ANEHTTVILTGTP 166 (208)
Q Consensus 129 ~Fd~vIIDEAsQa~Epe~liPL~~l-~~~~~~vVLvGD~ 166 (208)
.+|+|+||||--..+ +.-+... ......||+.|=.
T Consensus 90 ~~dvViIDEaQF~~~---v~el~~~l~~~gi~VI~~GL~ 125 (234)
T 2orv_A 90 GVAVIGIDEGQFFPD---IVEFCEAMANAGKTVIVAALD 125 (234)
T ss_dssp TCSEEEESSGGGCTT---HHHHHHHHHHTTCEEEEECCS
T ss_pred cCCEEEEEchhhhhh---HHHHHHHHHhCCCEEEEEecc
Confidence 589999999999875 3333322 2356789998855
No 107
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=50.51 E-value=12 Score=29.68 Aligned_cols=34 Identities=21% Similarity=0.184 Sum_probs=22.4
Q ss_pred CCcEEEEecCCCCCchhhhHHHhhcccCCceEEEEc
Q 037641 129 HFSHIFLLDASSATEPETMIALTNLANEHTTVILTG 164 (208)
Q Consensus 129 ~Fd~vIIDEAsQa~Epe~liPL~~l~~~~~~vVLvG 164 (208)
..|+|+||||--. ++..-=+..+....++||+.|
T Consensus 91 ~~DvIlIDEaQFf--k~~ve~~~~L~~~gk~VI~~G 124 (195)
T 1w4r_A 91 GVAVIGIDEGQFF--PDIVEFCEAMANAGKTVIVAA 124 (195)
T ss_dssp TCSEEEESSGGGC--TTHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEEchhhh--HHHHHHHHHHHHCCCeEEEEe
Confidence 4799999999877 332111223334578899887
No 108
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=42.99 E-value=12 Score=31.43 Aligned_cols=49 Identities=10% Similarity=0.069 Sum_probs=33.6
Q ss_pred CCCcEEEEecCCCCCchh--hhHHHhhcccCCceEEEEc-CCCCCCcceech
Q 037641 128 GHFSHIFLLDASSATEPE--TMIALTNLANEHTTVILTG-TPNNRTSWVRSD 176 (208)
Q Consensus 128 ~~Fd~vIIDEAsQa~Epe--~liPL~~l~~~~~~vVLvG-D~~QL~P~V~s~ 176 (208)
+.+.++|||||-.++... .|....--+++...+||+- ++..+.|.+.|.
T Consensus 81 ~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR 132 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR 132 (305)
T ss_dssp SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred CCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce
Confidence 358899999999988643 3555442223346777764 667899988887
No 109
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=35.32 E-value=36 Score=26.54 Aligned_cols=40 Identities=13% Similarity=0.077 Sum_probs=23.4
Q ss_pred CCCcEEEEecCCCCCc--------hhhhHHHhhcccCCceEEEEcCCC
Q 037641 128 GHFSHIFLLDASSATE--------PETMIALTNLANEHTTVILTGTPN 167 (208)
Q Consensus 128 ~~Fd~vIIDEAsQa~E--------pe~liPL~~l~~~~~~vVLvGD~~ 167 (208)
+.-.++|||||-.... +..+--+..-..+.-.+||+|-+.
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~ 133 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGP 133 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCG
T ss_pred cCceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCH
Confidence 3457999999977621 122222221112345899999884
No 110
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=33.94 E-value=64 Score=23.90 Aligned_cols=34 Identities=6% Similarity=0.069 Sum_probs=28.3
Q ss_pred HHHHHHHHcCCCCeEEEECCChHHHHHHHHHhhh
Q 037641 27 EAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKK 60 (208)
Q Consensus 27 e~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~ 60 (208)
+.+..++...++.++||-++|-..++.+...|.+
T Consensus 20 ~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~ 53 (172)
T 1t5i_A 20 RKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVE 53 (172)
T ss_dssp HHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHh
Confidence 4556666666778999999999999999999976
No 111
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=33.80 E-value=1.5e+02 Score=22.17 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=26.2
Q ss_pred HHHHHHHHcC-CCCeEEEECCChHHHHHHHHHhhh
Q 037641 27 EAVLEIYKRS-SKCRILVCAPINRTGDVLMRSLKK 60 (208)
Q Consensus 27 e~i~ql~~~~-~~~rILV~A~SN~AvD~l~~rL~~ 60 (208)
+.+..++... ++.++||-++|-..++.+...|.+
T Consensus 34 ~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~ 68 (185)
T 2jgn_A 34 SFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYH 68 (185)
T ss_dssp HHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 3444555443 578999999999999999998876
No 112
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=31.42 E-value=29 Score=26.77 Aligned_cols=26 Identities=4% Similarity=-0.144 Sum_probs=17.6
Q ss_pred CCCcEEEEecCCCC--CchhhhHHHhhc
Q 037641 128 GHFSHIFLLDASSA--TEPETMIALTNL 153 (208)
Q Consensus 128 ~~Fd~vIIDEAsQa--~Epe~liPL~~l 153 (208)
..+|++|+||++-. ..++.+-.|..+
T Consensus 104 ~~~dvlilDE~g~~~~~~~~~~~~l~~~ 131 (189)
T 2i3b_A 104 PGQRVCVIDEIGKMELFSQLFIQAVRQT 131 (189)
T ss_dssp SCCCCEEECCCSTTTTTCSHHHHHHHHH
T ss_pred cCCCEEEEeCCCccccccHHHHHHHHHH
Confidence 36899999997655 556655555433
No 113
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=31.41 E-value=69 Score=23.34 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=27.9
Q ss_pred HHHHHHHHcCCCCeEEEECCChHHHHHHHHHhhh
Q 037641 27 EAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKK 60 (208)
Q Consensus 27 e~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~ 60 (208)
+.+..++...++.++||-++|-..++.+...|.+
T Consensus 19 ~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~ 52 (165)
T 1fuk_A 19 ECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRN 52 (165)
T ss_dssp HHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHH
Confidence 4555666666678999999999999999999876
No 114
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=30.57 E-value=1.9e+02 Score=25.77 Aligned_cols=93 Identities=13% Similarity=0.191 Sum_probs=53.3
Q ss_pred HHHHHHHHHH-cCCCCeEEEECCChHHHHHHHHHhhhhCC-CCCeEEEeccccCCCCCCchhhccccccCCCccCcchHH
Q 037641 25 VREAVLEIYK-RSSKCRILVCAPINRTGDVLMRSLKKKIP-KSDMFRANAAFREVDGVPVDILPLCLYEGGECFQLPSLQ 102 (208)
Q Consensus 25 ive~i~ql~~-~~~~~rILV~A~SN~AvD~l~~rL~~~~~-~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~~~~~~ 102 (208)
..+.+...+. ..++.++||-++|-..++.+.+.|.+.++ +..+..+.+. ++..-+. ...+
T Consensus 274 ~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~------~~~~~R~------------~~~~ 335 (579)
T 3sqw_A 274 AVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGK------ITQNKRT------------SLVK 335 (579)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTT------SCHHHHH------------HHHH
T ss_pred HHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCC------CCHHHHH------------HHHH
Confidence 3444444443 35678999999999999999999987543 2333333221 1111000 0011
Q ss_pred Hh--ccCcEEEEcccccchhhcCCCCCCCCcEEEEecCCC
Q 037641 103 EL--MRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDASS 140 (208)
Q Consensus 103 ~l--~~~~Vv~~T~~~a~~l~~~~~~~~~Fd~vIIDEAsQ 140 (208)
.+ .+.+|++||-..+. ++.-...++||.-....
T Consensus 336 ~F~~g~~~vLVaT~~~~~-----GiDip~v~~VI~~~~p~ 370 (579)
T 3sqw_A 336 RFKKDESGILVCTDVGAR-----GMDFPNVHEVLQIGVPS 370 (579)
T ss_dssp HHHHCSSEEEEECGGGTS-----SCCCTTCCEEEEESCCS
T ss_pred HhhcCCCeEEEEcchhhc-----CCCcccCCEEEEcCCCC
Confidence 11 35689999865433 34444578888776554
No 115
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=29.20 E-value=84 Score=23.09 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCCCCeEEEECCChHHHHHHHHHhhh
Q 037641 26 REAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKK 60 (208)
Q Consensus 26 ve~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~ 60 (208)
.+.+..++...++.++||-++|-..++.+...|.+
T Consensus 22 ~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~ 56 (175)
T 2rb4_A 22 YQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQ 56 (175)
T ss_dssp HHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHH
Confidence 35666777766778999999999999999998876
No 116
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomic PSI, protein structure initiative, joint center for structu genomics; HET: U5P; 2.30A {Thermotoga maritima} SCOP: c.61.1.1
Probab=28.66 E-value=52 Score=26.41 Aligned_cols=42 Identities=17% Similarity=0.148 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHcCCCCeEEEECCChHHHHHHHHHhhhhCCCC
Q 037641 21 TGLVVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKS 65 (208)
Q Consensus 21 t~~Tive~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~ 65 (208)
||.|+..++..+..+.+ ++|.+|+. .|.-.-++++.+..++.
T Consensus 148 TG~Tl~~ai~~L~~~G~-~~I~~~~l--v~~~~g~~~l~~~~p~v 189 (221)
T 1o5o_A 148 TGVSSIKAIEILKENGA-KKITLVAL--IAAPEGVEAVEKKYEDV 189 (221)
T ss_dssp SSHHHHHHHHHHHHTTC-CEEEEECS--EECHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHHHcCC-CEEEEEEE--EeCHHHHHHHHHHCCCc
Confidence 89999999998888866 68888887 44445566676655443
No 117
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=28.38 E-value=68 Score=27.85 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=26.3
Q ss_pred hhHHHH---HHHHHHHHcCCCCeEEEECCChHHHHHHHHHhhh
Q 037641 21 TGLVVR---EAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKK 60 (208)
Q Consensus 21 t~~Tiv---e~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~ 60 (208)
+|||++ .++..+... +.++||.+||..-+..+.+.+..
T Consensus 19 SGKT~~~l~~~l~~~~~~--~~~~lil~Ptr~La~Q~~~~l~~ 59 (440)
T 1yks_A 19 AGKTRRFLPQILAECARR--RLRTLVLAPTRVVLSEMKEAFHG 59 (440)
T ss_dssp SSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHhc--CCeEEEEcchHHHHHHHHHHHhc
Confidence 345554 233334443 57999999999999998888763
No 118
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=27.82 E-value=73 Score=23.19 Aligned_cols=34 Identities=6% Similarity=0.096 Sum_probs=26.7
Q ss_pred HHHHHHHHcCCCCeEEEECCChHHHHHHHHHhhh
Q 037641 27 EAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKK 60 (208)
Q Consensus 27 e~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~ 60 (208)
+.+..++...++.++||-++|-..++.+...|.+
T Consensus 24 ~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~ 57 (163)
T 2hjv_A 24 SLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDD 57 (163)
T ss_dssp HHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHH
Confidence 3445555544567999999999999999999876
No 119
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=26.02 E-value=78 Score=24.34 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=28.4
Q ss_pred HHHHHHHHcCCCCeEEEECCChHHHHHHHHHhhhh
Q 037641 27 EAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKK 61 (208)
Q Consensus 27 e~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~ 61 (208)
+++.+++...++.++||-++|-..++.+...|.+.
T Consensus 20 ~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~ 54 (212)
T 3eaq_A 20 EVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL 54 (212)
T ss_dssp HHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc
Confidence 55666666556789999999999999999998763
No 120
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=25.85 E-value=42 Score=27.93 Aligned_cols=49 Identities=18% Similarity=0.237 Sum_probs=30.3
Q ss_pred CCCcEEEEecCCCCCchh--hhHHHhhcccCCceEEEE-cCCCCCCcceech
Q 037641 128 GHFSHIFLLDASSATEPE--TMIALTNLANEHTTVILT-GTPNNRTSWVRSD 176 (208)
Q Consensus 128 ~~Fd~vIIDEAsQa~Epe--~liPL~~l~~~~~~vVLv-GD~~QL~P~V~s~ 176 (208)
+.+.++|||||-.+++.. .|....--.+....+||+ .++.++.|.+.|.
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SR 158 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSR 158 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhc
Confidence 458899999999988532 233333111123455655 4566788888765
No 121
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=25.55 E-value=2.6e+02 Score=24.42 Aligned_cols=93 Identities=13% Similarity=0.191 Sum_probs=52.7
Q ss_pred HHHHHHHHHH-cCCCCeEEEECCChHHHHHHHHHhhhhCC-CCCeEEEeccccCCCCCCchhhccccccCCCccCcchHH
Q 037641 25 VREAVLEIYK-RSSKCRILVCAPINRTGDVLMRSLKKKIP-KSDMFRANAAFREVDGVPVDILPLCLYEGGECFQLPSLQ 102 (208)
Q Consensus 25 ive~i~ql~~-~~~~~rILV~A~SN~AvD~l~~rL~~~~~-~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~~~~~~ 102 (208)
..+.+...+. ..++.++||-++|-..++.+...|.+..+ +..+..+.+. ++..-+. ...+
T Consensus 325 ~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~------~~~~~R~------------~~~~ 386 (563)
T 3i5x_A 325 AVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGK------ITQNKRT------------SLVK 386 (563)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTT------SCHHHHH------------HHHH
T ss_pred HHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCC------CCHHHHH------------HHHH
Confidence 3444444443 35678999999999999999999987543 2333333221 1111000 0011
Q ss_pred Hh--ccCcEEEEcccccchhhcCCCCCCCCcEEEEecCCC
Q 037641 103 EL--MRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDASS 140 (208)
Q Consensus 103 ~l--~~~~Vv~~T~~~a~~l~~~~~~~~~Fd~vIIDEAsQ 140 (208)
.+ .+.+|++||-..+. ++.-...++||.-....
T Consensus 387 ~f~~g~~~vLvaT~~~~~-----GiDip~v~~VI~~~~p~ 421 (563)
T 3i5x_A 387 RFKKDESGILVCTDVGAR-----GMDFPNVHEVLQIGVPS 421 (563)
T ss_dssp HHHHCSSEEEEECGGGTS-----SCCCTTCCEEEEESCCS
T ss_pred HHhcCCCCEEEEcchhhc-----CCCcccCCEEEEECCCC
Confidence 11 34679999965433 34434578888766544
No 122
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=24.50 E-value=1e+02 Score=28.29 Aligned_cols=39 Identities=13% Similarity=0.189 Sum_probs=27.3
Q ss_pred chhHHHHHHH---HHHHHcCCCCeEEEECCChHHHHHHHHHhhh
Q 037641 20 KTGLVVREAV---LEIYKRSSKCRILVCAPINRTGDVLMRSLKK 60 (208)
Q Consensus 20 ~t~~Tive~i---~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~ 60 (208)
+||||++-++ ..+.. .+.+|+|++||+.-.+.+.+.+..
T Consensus 32 GtGKT~a~l~p~l~~~~~--~~~kvli~t~T~~l~~Qi~~el~~ 73 (620)
T 4a15_A 32 GSGKTIMALKSALQYSSE--RKLKVLYLVRTNSQEEQVIKELRS 73 (620)
T ss_dssp TSCHHHHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhhh--cCCeEEEECCCHHHHHHHHHHHHH
Confidence 3678876543 22323 257999999999999998776543
No 123
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=24.31 E-value=71 Score=26.20 Aligned_cols=47 Identities=15% Similarity=0.238 Sum_probs=28.2
Q ss_pred CCcEEEEecCCCCCchhhhHHHhhc---ccCCceEEEEcCC-CCCCcceech
Q 037641 129 HFSHIFLLDASSATEPETMIALTNL---ANEHTTVILTGTP-NNRTSWVRSD 176 (208)
Q Consensus 129 ~Fd~vIIDEAsQa~Epe~liPL~~l---~~~~~~vVLvGD~-~QL~P~V~s~ 176 (208)
.+.++|+||+...+ ++..-.|... ......+|++... ..+.|.+.+.
T Consensus 134 ~~~vlilDE~~~L~-~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR 184 (354)
T 1sxj_E 134 RYKCVIINEANSLT-KDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQ 184 (354)
T ss_dssp CCEEEEEECTTSSC-HHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTT
T ss_pred CCeEEEEeCccccC-HHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhh
Confidence 57899999998854 4433333221 1234678888754 4566665543
No 124
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi}
Probab=24.11 E-value=66 Score=22.58 Aligned_cols=38 Identities=13% Similarity=0.132 Sum_probs=30.0
Q ss_pred hcccCCCCchhHHHHHHHHHHHHcCCCCeEEEECCChH
Q 037641 12 RNNSDNLSKTGLVVREAVLEIYKRSSKCRILVCAPINR 49 (208)
Q Consensus 12 ~~~~~~~~~t~~Tive~i~ql~~~~~~~rILV~A~SN~ 49 (208)
...+..|...+......+...++..|+.+|.|.+||..
T Consensus 22 ~~~s~~L~~~~~~~L~~~a~~l~~~~~~~i~I~GhtD~ 59 (123)
T 3oon_A 22 YPNSFQILQKEYKKIDLIAKLLEKFKKNNILIEGHTEQ 59 (123)
T ss_dssp CTTSCCBCGGGHHHHHHHHHHHHHSCSCCEEEEECCCS
T ss_pred CCCChhcCHHHHHHHHHHHHHHHHCCCceEEEEEEeCC
Confidence 34455677778877788888888888889999999954
No 125
>3td3_A Outer membrane protein OMP38; OMPA-like fold, cell-WALL attachment, peptidoglycan-binding, protein,peptide binding protein; 1.59A {Acinetobacter baumannii} PDB: 3td4_A* 3td5_A*
Probab=22.03 E-value=83 Score=22.09 Aligned_cols=37 Identities=11% Similarity=0.018 Sum_probs=29.2
Q ss_pred cccCCCCchhHHHHHHHHHHHHcCCCCeEEEECCChH
Q 037641 13 NNSDNLSKTGLVVREAVLEIYKRSSKCRILVCAPINR 49 (208)
Q Consensus 13 ~~~~~~~~t~~Tive~i~ql~~~~~~~rILV~A~SN~ 49 (208)
..+..|...+......+...++..|+.+|.|.+||..
T Consensus 20 ~~s~~l~~~~~~~L~~~a~~l~~~~~~~i~I~GhtD~ 56 (123)
T 3td3_A 20 TNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDN 56 (123)
T ss_dssp TTCCCCCGGGHHHHHHHHHHHHHSTTCEEEEEECCCS
T ss_pred CCChhcCHHHHHHHHHHHHHHHhCCCceEEEEEEeCC
Confidence 3445677777777788888888888889999999854
No 126
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=21.92 E-value=81 Score=22.15 Aligned_cols=36 Identities=6% Similarity=0.087 Sum_probs=28.4
Q ss_pred ccCCCCchhHHHHHHHHHHHHcCCCCeEEEECCChH
Q 037641 14 NSDNLSKTGLVVREAVLEIYKRSSKCRILVCAPINR 49 (208)
Q Consensus 14 ~~~~~~~t~~Tive~i~ql~~~~~~~rILV~A~SN~ 49 (208)
.+..+...+....+.+...++..|+.+|.|.++|..
T Consensus 13 ~s~~l~~~~~~~L~~ia~~l~~~p~~~i~I~GhtD~ 48 (118)
T 2hqs_H 13 DKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADE 48 (118)
T ss_dssp TCCCCCGGGHHHHHHHHHHHHHCTTCCEEEEECCCS
T ss_pred CCcccCHHHHHHHHHHHHHHHhCCCcEEEEEEECCC
Confidence 345677777777777888888888889999999865
No 127
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=21.90 E-value=2.5e+02 Score=27.80 Aligned_cols=94 Identities=19% Similarity=0.184 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHcCCCCeEEEECCChHHHHHHHHHhhhhCCCCCeEEEeccccCCCCCCchhhccccccCCCccCcchHHH
Q 037641 24 VVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKSDMFRANAAFREVDGVPVDILPLCLYEGGECFQLPSLQE 103 (208)
Q Consensus 24 Tive~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~~i~Rv~~~~r~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 103 (208)
.+.+.++..+.+ +.+++|.+++-..++.+.+.|.+.+++..+..+.+. ++..-+. ...+.
T Consensus 800 ~i~~~il~~l~~--g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~------~~~~eR~------------~il~~ 859 (1151)
T 2eyq_A 800 VVREAILREILR--GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQ------MRERELE------------RVMND 859 (1151)
T ss_dssp HHHHHHHHHHTT--TCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSS------CCHHHHH------------HHHHH
T ss_pred HHHHHHHHHHhc--CCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCC------CCHHHHH------------HHHHH
Confidence 455666665543 678999999999999999999877655544433321 1111000 00011
Q ss_pred h--ccCcEEEEcccccchhhcCCCCCCCCcEEEEecCCCCC
Q 037641 104 L--MRFRVIFSTFTSSFRLHNEGIPAGHFSHIFLLDASSAT 142 (208)
Q Consensus 104 l--~~~~Vv~~T~~~a~~l~~~~~~~~~Fd~vIIDEAsQa~ 142 (208)
+ .+.+|++||-.... ++.-...++||+..+-...
T Consensus 860 F~~g~~~VLVaT~v~e~-----GiDip~v~~VIi~~~~~~~ 895 (1151)
T 2eyq_A 860 FHHQRFNVLVCTTIIET-----GIDIPTANTIIIERADHFG 895 (1151)
T ss_dssp HHTTSCCEEEESSTTGG-----GSCCTTEEEEEETTTTSSC
T ss_pred HHcCCCcEEEECCccee-----eecccCCcEEEEeCCCCCC
Confidence 1 34689999965432 3333467899988775544
No 128
>1b4b_A Arginine repressor; core, oligomerization domain, helix TUR; HET: ARG; 2.20A {Geobacillus stearothermophilus} SCOP: d.74.2.1
Probab=20.45 E-value=85 Score=20.28 Aligned_cols=45 Identities=7% Similarity=0.018 Sum_probs=31.3
Q ss_pred CCCCchhHHHHHHHHHHHHc------CCCCeEEEECCChHHHHHHHHHhhh
Q 037641 16 DNLSKTGLVVREAVLEIYKR------SSKCRILVCAPINRTGDVLMRSLKK 60 (208)
Q Consensus 16 ~~~~~t~~Tive~i~ql~~~------~~~~rILV~A~SN~AvD~l~~rL~~ 60 (208)
|..+++...++.+|-+.-.. -..-.|||.+.+..+++.+.+++.+
T Consensus 19 kT~pG~A~~va~~iD~~~~~eI~GTIAGDDTIlvi~r~~~~a~~l~~~i~~ 69 (71)
T 1b4b_A 19 RTLPGNAHAIGVLLDNLDWDEIVGTICGDDTCLIICRTPKDAKKVSNQLLS 69 (71)
T ss_dssp EESTTCHHHHHHHHHHHCCTTEEEEEECSSEEEEEESSHHHHHHHHHHHHT
T ss_pred EeCCCcHHHHHHHHHhCCCCCeEEEEeeCCEEEEEECCHHHHHHHHHHHHH
Confidence 45566666666665543321 0136899999999999999999875
No 129
>2e55_A Uracil phosphoribosyltransferase; structural genomics; 2.15A {Aquifex aeolicus}
Probab=20.18 E-value=55 Score=25.92 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHcCCCCeEEEECCChHHHHHHHHHhhhhCCCC
Q 037641 21 TGLVVREAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKKKIPKS 65 (208)
Q Consensus 21 t~~Tive~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~~~~~~ 65 (208)
||.|+..++..+.++.+ ++|.+|+. .+...-++++.+..++.
T Consensus 133 TG~T~~~ai~~L~~~G~-~~I~~~~l--v~~~~g~~~l~~~~p~v 174 (208)
T 2e55_A 133 TGGTLEVALREILKHSP-LKVKSVHA--IAAPEGLKRIEEKFKEV 174 (208)
T ss_dssp SSHHHHHHHHHHHTTCB-SEEEEEEE--EECHHHHHHHHHHCTTS
T ss_pred cHHHHHHHHHHHHHcCC-CEEEEEEE--EECHHHHHHHHHHCCCc
Confidence 89999999988887765 67777766 33334455666544433
No 130
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=20.17 E-value=4.5e+02 Score=23.13 Aligned_cols=34 Identities=3% Similarity=0.015 Sum_probs=26.9
Q ss_pred HHHHHHHHcCCCCeEEEECCChHHHHHHHHHhhh
Q 037641 27 EAVLEIYKRSSKCRILVCAPINRTGDVLMRSLKK 60 (208)
Q Consensus 27 e~i~ql~~~~~~~rILV~A~SN~AvD~l~~rL~~ 60 (208)
+.+..++...++.++||-++|-..++.+...|.+
T Consensus 225 ~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~ 258 (523)
T 1oyw_A 225 DQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQS 258 (523)
T ss_dssp HHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHH
Confidence 4455555555678999999999999999998876
No 131
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=20.03 E-value=69 Score=31.68 Aligned_cols=43 Identities=19% Similarity=0.153 Sum_probs=27.5
Q ss_pred CchhHHHHHHHHHHHHcCC-CCeEEEECCChHHHHHHHHHhhhhCC
Q 037641 19 SKTGLVVREAVLEIYKRSS-KCRILVCAPINRTGDVLMRSLKKKIP 63 (208)
Q Consensus 19 ~~t~~Tive~i~ql~~~~~-~~rILV~A~SN~AvD~l~~rL~~~~~ 63 (208)
|||. ++++-|..++...+ +.+||+..|.+..-. .-.|+.+.++
T Consensus 13 GKT~-~l~~ri~~ll~~~~~~~~il~lVP~q~TFt-~~~rl~~~l~ 56 (1166)
T 3u4q_B 13 GKTK-LIINSIQDELRRAPFGKPIIFLVPDQMTFL-MEYELAKTPD 56 (1166)
T ss_dssp SHHH-HHHHHHHHHHHHCTTSSCEEEECCGGGHHH-HHHHHTCCSS
T ss_pred ChHH-HHHHHHHHHHHhCCCCCcEEEEecCcccHH-HHHHHHHhhh
Confidence 4444 36666777776544 379999988665444 5566766554
Done!