BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037642
(74 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1O5U|A Chain A, Crystal Structure Of A Duf861 Family Protein (Tm1112) From
Thermotoga Maritima At 1.83 A Resolution
pdb|1O5U|B Chain B, Crystal Structure Of A Duf861 Family Protein (Tm1112) From
Thermotoga Maritima At 1.83 A Resolution
Length = 101
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 1 WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60
W +F +D ETCY+L+GKV+V + +V GDLVT PKGL C W V V
Sbjct: 36 WEKEVSEFDWYYDTNETCYILEGKVEVTTEDGKKYV-IEKGDLVTFPKGLRCRWKVLEPV 94
Query: 61 DKYYKF 66
K+Y
Sbjct: 95 RKHYNL 100
>pdb|1LKN|A Chain A, Solution Nmr Structure Of Protein Tm_1112 From
Thermotoga Maritima. Ontario Centre For Structural
Proteomics Target Tm1112_1_89; Northeast Structural
Genomics Consortium Target Vt74.
pdb|2K9Z|A Chain A, Nmr Structure Of The Protein Tm1112
Length = 89
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 1 WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60
W +F +D ETCY+L+GKV+V + +V GDLVT PKGL C W V V
Sbjct: 24 WEKEVSEFDWYYDTNETCYILEGKVEVTTEDGKKYV-IEKGDLVTFPKGLRCRWKVLEPV 82
Query: 61 DKYYKF 66
K+Y
Sbjct: 83 RKHYNL 88
>pdb|3EO6|A Chain A, Crystal Structure Of Protein Of Unknown Function (Duf1255)
(Afe_2634) From Acidithiobacillus Ferrooxidans Ncib8455
At 0.97 A Resolution
pdb|3EO6|B Chain B, Crystal Structure Of Protein Of Unknown Function (Duf1255)
(Afe_2634) From Acidithiobacillus Ferrooxidans Ncib8455
At 0.97 A Resolution
Length = 106
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 5 PGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVD 61
PG + L + ET +L G + +G++D E AGD IP S +V +D
Sbjct: 45 PGVYTLSSEVAETIRVLSGXAYYHAEGANDVQELHAGDSXVIPANQSYRLEVXEPLD 101
>pdb|3ES4|A Chain A, Crystal Structure Of Protein Of Unknown Function (duf861)
With A Rmlc- Like Cupin Fold (17741406) From
Agrobacterium Tumefaciens Str. C58 (dupont) At 1.64 A
Resolution
pdb|3ES4|B Chain B, Crystal Structure Of Protein Of Unknown Function (duf861)
With A Rmlc- Like Cupin Fold (17741406) From
Agrobacterium Tumefaciens Str. C58 (dupont) At 1.64 A
Resolution
Length = 116
Score = 32.0 bits (71), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 1 WGCSPGKFQLK-FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDV 56
W PG + D EET +++G+ +Y + +D V+ G G +V+I KG+ ++
Sbjct: 47 WXAEPGIYNYAGRDLEETFVVVEGEA-LYSQADADPVKIGPGSIVSIAKGVPSRLEI 102
>pdb|3BCW|A Chain A, Crystal Structure Of A Duf861 Family Protein With A
Rmlc-Like Cupin Fold (Bb1179) From Bordetella
Bronchiseptica Rb50 At 1.60 A Resolution
pdb|3BCW|B Chain B, Crystal Structure Of A Duf861 Family Protein With A
Rmlc-Like Cupin Fold (Bb1179) From Bordetella
Bronchiseptica Rb50 At 1.60 A Resolution
Length = 123
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 1 WGCSPGKFQLKFDAE-ETCYLLKGKVK-VYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV 58
W + G FQ E C++++G+ + V P G+ V+ AGD P+G + W+V
Sbjct: 54 WESTSGSFQSNTTGYIEYCHIIEGEARLVDPDGTVHAVK--AGDAFIXPEGYTGRWEVDR 111
Query: 59 AVDKYY 64
V K Y
Sbjct: 112 HVKKIY 117
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 12 FDAEET-CYLLKG-KVKV-YPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60
FD E + Y KG V V Y +GS W F DLVTIPKG + ++ V++A
Sbjct: 53 FDTERSSTYRSKGFDVTVKYTQGS--WTGFVGEDLVTIPKGFNTSFLVNIAT 102
>pdb|1X7N|A Chain A, The Crystal Structure Of Pyrococcus Furiosus
Phosphoglucose Isomerase With Bound
5-Phospho-D-Arabinonate And Manganese
pdb|1X8E|A Chain A, Crystal Structure Of Pyrococcus Furiosus Phosphoglucose
Isomerase Free Enzyme
pdb|1X8E|B Chain B, Crystal Structure Of Pyrococcus Furiosus Phosphoglucose
Isomerase Free Enzyme
Length = 190
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 4 SPGKFQLKFDAEETCYLLKGK---VKVYPKGSSDWVEFGAGDLVTIP 47
+ G F K D E LKGK + P+G + W+ G +V +P
Sbjct: 86 TKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVP 132
>pdb|2GC0|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With 5-Phospho-D-
Arabinonohydroxamate And Zinc
pdb|2GC0|B Chain B, The Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With 5-Phospho-D-
Arabinonohydroxamate And Zinc
pdb|2GC1|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With Sorbitol 6-Phosphate
And Zinc
pdb|2GC1|B Chain B, The Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With Sorbitol 6-Phosphate
And Zinc
pdb|2GC2|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With Fructose 6-Phosphate
And Zinc
pdb|2GC2|B Chain B, The Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With Fructose 6-Phosphate
And Zinc
pdb|2GC3|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With Mannose 6-Phosphate
And Zinc
pdb|2GC3|B Chain B, The Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With Mannose 6-Phosphate
And Zinc
Length = 188
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 4 SPGKFQLKFDAEETCYLLKGK---VKVYPKGSSDWVEFGAGDLVTIP 47
+ G F K D E LKGK + P+G + W+ G +V +P
Sbjct: 86 TKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVP 132
>pdb|1QXJ|A Chain A, Crystal Structure Of Native Phosphoglucose Isomerase From
Pyrococcus Furiosus
pdb|1QXJ|B Chain B, Crystal Structure Of Native Phosphoglucose Isomerase From
Pyrococcus Furiosus
pdb|1QXR|A Chain A, Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With 5-Phosphoarabinonate
pdb|1QXR|B Chain B, Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With 5-Phosphoarabinonate
pdb|1QY4|A Chain A, Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With Gluconate
6-Phosphate
pdb|1QY4|B Chain B, Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus In Complex With Gluconate
6-Phosphate
Length = 189
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 4 SPGKFQLKFDAEETCYLLKGK---VKVYPKGSSDWVEFGAGDLVTIP 47
+ G F K D E LKGK + P+G + W+ G +V +P
Sbjct: 85 TKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVP 131
>pdb|3UFX|B Chain B, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|E Chain E, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|G Chain G, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|I Chain I, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
Length = 397
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 13/42 (30%)
Query: 15 EETCYLLKGK-VKVYP------------KGSSDWVEFGAGDL 43
EE LL+GK V +YP KG + W+EF GDL
Sbjct: 346 EEAKKLLEGKPVYMYPTSIEAAKVTVAMKGGAAWLEFAPGDL 387
>pdb|1X82|A Chain A, Crystal Structure Of Phosphoglucose Isomerase From
Pyrococcus Furiosus With Bound 5-Phospho-D-Arabinonate
Length = 190
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 6 GKFQLKFDAEETCYLLKGK---VKVYPKGSSDWVEFGAGDLVTIP 47
G F K D E LKGK + P+G + W+ G +V +P
Sbjct: 88 GHFHAKLDRAEVYVALKGKGGXLLQTPEGDAKWISXEPGTVVYVP 132
>pdb|2OYZ|A Chain A, Crystal Structure Of Unknown Function Protein Vpa0057
From Vibrio Parahaemolyticus (Targeted Domain 2-94)
Length = 94
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 5 PGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGD 42
PG++ A E ++KG + V G +DW + +G+
Sbjct: 32 PGEYTFGTQAPERXTVVKGALVVKRVGEADWTTYSSGE 69
>pdb|3MYX|A Chain A, Crystal Structure Of A Pspto_0244 (Protein With Unknown
Func Belongs To Pfam Duf861 Family) From Pseudomonas
Syringae Pv Str. Dc3000 At 1.30 A Resolution
pdb|3MYX|B Chain B, Crystal Structure Of A Pspto_0244 (Protein With Unknown
Func Belongs To Pfam Duf861 Family) From Pseudomonas
Syringae Pv Str. Dc3000 At 1.30 A Resolution
Length = 238
Score = 25.0 bits (53), Expect = 9.5, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 20 LLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYY 64
L++G+V + + S + GD V + +G C W + V K+Y
Sbjct: 192 LIEGRVVLSLENGSS-LTVNTGDTVFVAQGAPCKWTSTGYVRKFY 235
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.468
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,387,112
Number of Sequences: 62578
Number of extensions: 86084
Number of successful extensions: 162
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 151
Number of HSP's gapped (non-prelim): 15
length of query: 74
length of database: 14,973,337
effective HSP length: 44
effective length of query: 30
effective length of database: 12,219,905
effective search space: 366597150
effective search space used: 366597150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)