Query 037642
Match_columns 74
No_of_seqs 100 out of 1005
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 03:01:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037642.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037642hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3450 Predicted enzyme of th 99.9 6.5E-26 1.4E-30 140.2 9.7 66 1-67 50-115 (116)
2 PF05899 Cupin_3: Protein of u 99.9 1.6E-23 3.4E-28 120.3 9.0 63 1-64 12-74 (74)
3 PF06249 EutQ: Ethanolamine ut 99.5 4.4E-13 9.5E-18 86.4 10.2 63 5-69 86-148 (152)
4 PRK15457 ethanolamine utilizat 99.3 1.2E-11 2.5E-16 84.2 8.8 61 5-67 166-226 (233)
5 COG4766 EutQ Ethanolamine util 99.3 1.3E-11 2.9E-16 79.8 7.9 64 4-69 108-171 (176)
6 PF07883 Cupin_2: Cupin domain 99.2 3.3E-10 7.2E-15 62.5 8.9 61 3-65 5-68 (71)
7 COG0662 {ManC} Mannose-6-phosp 99.1 1.4E-09 3E-14 67.5 8.8 61 7-69 50-111 (127)
8 COG3837 Uncharacterized conser 99.1 7.5E-10 1.6E-14 71.7 7.6 62 4-67 50-117 (161)
9 PRK13290 ectC L-ectoine syntha 99.0 4.6E-09 1E-13 65.6 9.4 53 14-67 55-108 (125)
10 PF06865 DUF1255: Protein of u 98.9 1.2E-08 2.7E-13 61.1 8.6 61 4-66 31-91 (94)
11 PRK10579 hypothetical protein; 98.9 1.8E-08 3.8E-13 60.4 9.1 61 4-66 31-91 (94)
12 PF02311 AraC_binding: AraC-li 98.9 7E-08 1.5E-12 57.5 10.4 58 8-67 16-76 (136)
13 PF00190 Cupin_1: Cupin; Inte 98.9 5.5E-08 1.2E-12 61.1 9.7 67 4-71 42-123 (144)
14 PRK09943 DNA-binding transcrip 98.8 3.1E-08 6.7E-13 64.5 8.4 47 11-59 125-171 (185)
15 PRK13264 3-hydroxyanthranilate 98.7 3.8E-08 8.3E-13 64.8 6.6 57 4-60 42-102 (177)
16 COG1917 Uncharacterized conser 98.7 7.1E-08 1.5E-12 59.5 7.2 55 4-60 51-108 (131)
17 TIGR03214 ura-cupin putative a 98.7 1E-07 2.3E-12 65.5 8.5 64 4-69 187-253 (260)
18 smart00835 Cupin_1 Cupin. This 98.7 9.2E-08 2E-12 60.2 7.2 55 4-58 38-99 (146)
19 TIGR03037 anthran_nbaC 3-hydro 98.7 5.4E-08 1.2E-12 63.2 6.0 53 8-60 41-96 (159)
20 TIGR03404 bicupin_oxalic bicup 98.7 1.8E-07 3.8E-12 67.3 8.3 65 4-68 253-324 (367)
21 PRK04190 glucose-6-phosphate i 98.6 3.1E-07 6.8E-12 61.0 8.7 59 9-67 90-155 (191)
22 PRK11171 hypothetical protein; 98.6 3.9E-07 8.4E-12 62.8 8.2 64 4-69 192-258 (266)
23 TIGR01479 GMP_PMI mannose-1-ph 98.6 4.1E-07 8.9E-12 66.8 8.3 61 4-66 384-449 (468)
24 TIGR03214 ura-cupin putative a 98.6 6.1E-07 1.3E-11 61.7 8.4 43 14-58 80-122 (260)
25 PRK11171 hypothetical protein; 98.5 7.4E-07 1.6E-11 61.4 8.3 44 13-58 82-125 (266)
26 PRK15460 cpsB mannose-1-phosph 98.5 4.8E-07 1E-11 67.0 7.7 56 9-66 401-458 (478)
27 PF01050 MannoseP_isomer: Mann 98.5 1.2E-06 2.7E-11 56.3 7.6 49 8-58 78-126 (151)
28 COG3123 Uncharacterized protei 98.5 2E-06 4.3E-11 50.9 7.6 57 4-60 31-87 (94)
29 TIGR03404 bicupin_oxalic bicup 98.4 2.5E-06 5.4E-11 61.4 8.9 57 9-67 83-144 (367)
30 PF12852 Cupin_6: Cupin 98.4 1.3E-06 2.8E-11 56.5 6.7 43 14-56 35-77 (186)
31 PRK13502 transcriptional activ 98.3 3.4E-06 7.5E-11 57.2 7.6 52 13-66 37-88 (282)
32 PRK13501 transcriptional activ 98.3 4.5E-06 9.8E-11 57.0 7.5 45 13-59 37-81 (290)
33 PRK13500 transcriptional activ 98.2 7.8E-06 1.7E-10 56.8 7.7 54 12-67 66-119 (312)
34 COG2140 Thermophilic glucose-6 98.2 1.2E-05 2.6E-10 54.3 8.2 67 4-70 88-164 (209)
35 PF03079 ARD: ARD/ARD' family; 98.2 1.5E-05 3.2E-10 51.7 8.2 47 12-58 90-139 (157)
36 PF04209 HgmA: homogentisate 1 98.1 2.1E-05 4.6E-10 57.8 8.8 60 8-70 140-199 (424)
37 PRK10296 DNA-binding transcrip 98.1 2.1E-05 4.6E-10 53.3 7.8 41 13-55 42-82 (278)
38 PRK10371 DNA-binding transcrip 98.1 8.9E-06 1.9E-10 56.5 5.7 48 13-62 45-92 (302)
39 PRK13503 transcriptional activ 98.0 1E-05 2.2E-10 54.5 4.8 47 12-60 33-79 (278)
40 TIGR02297 HpaA 4-hydroxyphenyl 98.0 2.5E-05 5.5E-10 52.9 6.6 45 14-60 44-88 (287)
41 COG1791 Uncharacterized conser 98.0 7.1E-05 1.5E-09 49.4 7.9 57 12-68 93-154 (181)
42 PF12973 Cupin_7: ChrR Cupin-l 98.0 0.00014 3E-09 42.4 8.3 51 4-60 32-84 (91)
43 PRK05341 homogentisate 1,2-dio 98.0 6.6E-05 1.4E-09 55.4 8.2 62 8-71 148-209 (438)
44 PF06339 Ectoine_synth: Ectoin 97.9 0.00013 2.8E-09 45.9 7.8 57 13-69 54-110 (126)
45 TIGR01015 hmgA homogentisate 1 97.9 0.00013 2.8E-09 53.7 8.5 60 8-70 142-201 (429)
46 PF11699 CENP-C_C: Mif2/CENP-C 97.9 0.00025 5.5E-09 41.7 8.1 44 12-57 31-74 (85)
47 PLN02658 homogentisate 1,2-dio 97.8 0.00015 3.3E-09 53.5 8.4 61 8-70 141-201 (435)
48 PF06052 3-HAO: 3-hydroxyanthr 97.8 0.00011 2.4E-09 47.4 6.4 48 9-56 47-97 (151)
49 TIGR02272 gentisate_1_2 gentis 97.8 0.0001 2.2E-09 52.8 6.8 46 13-60 269-314 (335)
50 COG4101 Predicted mannose-6-ph 97.8 0.00014 3.1E-09 45.7 6.3 47 9-55 62-109 (142)
51 COG4297 Uncharacterized protei 97.8 0.0001 2.2E-09 47.4 5.7 45 9-53 59-104 (163)
52 PF06560 GPI: Glucose-6-phosph 97.8 0.00023 5.1E-09 47.1 7.6 47 12-58 81-134 (182)
53 KOG2107 Uncharacterized conser 97.7 7.9E-05 1.7E-09 48.9 5.1 46 13-58 92-140 (179)
54 COG3257 GlxB Uncharacterized p 97.6 0.00053 1.2E-08 47.1 7.5 40 14-55 83-122 (264)
55 PLN00212 glutelin; Provisional 97.6 0.00095 2.1E-08 50.0 9.3 51 9-59 364-418 (493)
56 PLN00212 glutelin; Provisional 97.5 0.0008 1.7E-08 50.4 8.6 67 4-70 88-186 (493)
57 COG3508 HmgA Homogentisate 1,2 97.4 0.00078 1.7E-08 49.0 7.3 60 7-68 139-198 (427)
58 PF02041 Auxin_BP: Auxin bindi 97.3 0.0056 1.2E-07 39.9 9.2 57 12-68 62-128 (167)
59 PRK10572 DNA-binding transcrip 97.3 0.0012 2.6E-08 44.9 6.5 43 13-57 48-90 (290)
60 PF14525 AraC_binding_2: AraC- 97.3 0.0022 4.9E-08 39.7 7.0 50 14-65 55-104 (172)
61 TIGR02451 anti_sig_ChrR anti-s 97.2 0.00083 1.8E-08 45.2 4.9 51 13-69 146-198 (215)
62 PF05523 FdtA: WxcM-like, C-te 97.2 0.0067 1.4E-07 37.9 8.5 52 8-59 48-102 (131)
63 PRK09685 DNA-binding transcrip 97.2 0.0031 6.6E-08 43.1 7.5 48 14-63 71-118 (302)
64 TIGR02272 gentisate_1_2 gentis 97.1 0.0016 3.4E-08 46.8 5.5 46 13-59 100-145 (335)
65 TIGR00218 manA mannose-6-phosp 97.0 0.0056 1.2E-07 42.8 7.9 41 13-55 252-293 (302)
66 KOG2757 Mannose-6-phosphate is 97.0 0.0026 5.6E-08 46.4 5.9 53 13-66 352-404 (411)
67 PF11142 DUF2917: Protein of u 96.8 0.0095 2.1E-07 33.1 6.3 53 4-56 5-58 (63)
68 PRK15131 mannose-6-phosphate i 96.8 0.012 2.5E-07 43.0 8.2 40 10-51 335-374 (389)
69 PRK00924 5-keto-4-deoxyuronate 96.8 0.014 3E-07 41.0 8.2 57 12-70 71-131 (276)
70 COG3435 Gentisate 1,2-dioxygen 96.5 0.013 2.8E-07 42.0 6.4 43 13-57 280-322 (351)
71 PF04962 KduI: KduI/IolB famil 96.4 0.023 5.1E-07 39.4 7.1 58 12-71 44-110 (261)
72 COG3257 GlxB Uncharacterized p 96.3 0.0091 2E-07 41.2 4.8 52 15-68 204-255 (264)
73 PLN02288 mannose-6-phosphate i 96.2 0.011 2.3E-07 43.3 5.0 42 12-53 352-393 (394)
74 PF13621 Cupin_8: Cupin-like d 96.1 0.022 4.8E-07 37.4 5.7 36 34-69 209-248 (251)
75 COG1482 ManA Phosphomannose is 96.1 0.051 1.1E-06 38.8 7.7 42 14-57 260-302 (312)
76 COG3435 Gentisate 1,2-dioxygen 95.9 0.013 2.8E-07 42.0 4.1 46 12-58 110-155 (351)
77 KOG0501 K+-channel KCNQ [Inorg 95.5 0.036 7.7E-07 43.2 5.2 42 2-44 575-618 (971)
78 PF02678 Pirin: Pirin; InterP 94.8 0.29 6.2E-06 29.8 6.8 44 11-55 47-90 (107)
79 PF05962 HutD: HutD; InterPro 94.7 0.52 1.1E-05 31.0 8.5 66 5-70 45-112 (184)
80 PF05726 Pirin_C: Pirin C-term 94.6 0.52 1.1E-05 28.0 8.2 49 11-63 17-66 (104)
81 PRK15186 AraC family transcrip 94.6 0.17 3.6E-06 35.5 6.1 47 12-59 36-82 (291)
82 PF04622 ERG2_Sigma1R: ERG2 an 94.5 0.3 6.5E-06 33.3 7.1 47 14-60 119-165 (216)
83 PF06719 AraC_N: AraC-type tra 94.2 0.34 7.3E-06 30.7 6.6 43 14-58 23-65 (155)
84 PF08007 Cupin_4: Cupin superf 94.1 0.16 3.6E-06 35.7 5.3 53 7-59 127-201 (319)
85 PRK10202 ebgC cryptic beta-D-g 93.3 0.55 1.2E-05 29.9 6.4 60 5-65 56-137 (149)
86 PF14499 DUF4437: Domain of un 93.3 0.17 3.6E-06 35.2 4.1 51 13-65 55-106 (251)
87 PF09313 DUF1971: Domain of un 92.7 1.2 2.5E-05 25.9 7.2 46 14-59 25-75 (82)
88 KOG1417 Homogentisate 1,2-diox 92.3 0.42 9.1E-06 34.7 5.1 49 11-61 152-200 (446)
89 PRK11396 hypothetical protein; 91.7 2 4.3E-05 28.8 7.5 64 6-70 47-113 (191)
90 TIGR01221 rmlC dTDP-4-dehydror 91.4 2.8 6E-05 27.5 8.0 57 13-69 66-134 (176)
91 KOG3995 3-hydroxyanthranilate 91.2 0.29 6.3E-06 33.8 3.3 45 9-53 47-94 (279)
92 PF02373 JmjC: JmjC domain, hy 91.0 0.66 1.4E-05 27.0 4.4 25 35-59 82-106 (114)
93 PF00908 dTDP_sugar_isom: dTDP 89.9 4 8.6E-05 26.8 9.0 55 14-68 67-133 (176)
94 COG1741 Pirin-related protein 89.4 1.7 3.7E-05 30.6 6.0 45 11-56 62-106 (276)
95 COG2731 EbgC Beta-galactosidas 89.4 2.6 5.7E-05 27.3 6.4 59 6-65 61-147 (154)
96 PF07385 DUF1498: Protein of u 89.4 2.9 6.3E-05 28.8 6.9 44 15-60 137-180 (225)
97 COG3717 KduI 5-keto 4-deoxyuro 89.4 1.4 3.1E-05 30.8 5.4 56 13-70 74-133 (278)
98 PHA02984 hypothetical protein; 88.6 5.5 0.00012 28.3 7.9 49 11-59 90-140 (286)
99 PF05962 HutD: HutD; InterPro 88.4 2.3 4.9E-05 27.9 5.7 39 12-52 133-171 (184)
100 PRK15044 transcriptional regul 88.3 1.9 4E-05 30.7 5.6 45 13-58 39-83 (295)
101 TIGR00218 manA mannose-6-phosp 87.7 0.34 7.4E-06 33.8 1.6 20 35-54 152-171 (302)
102 COG1482 ManA Phosphomannose is 87.4 0.58 1.3E-05 33.5 2.6 21 35-55 159-179 (312)
103 KOG0498 K+-channel ERG and rel 87.0 2 4.2E-05 34.1 5.5 55 3-59 447-515 (727)
104 PF00027 cNMP_binding: Cyclic 86.9 3.4 7.3E-05 22.3 5.9 63 4-67 5-78 (91)
105 COG3718 IolB Uncharacterized e 85.0 7.7 0.00017 27.2 7.0 58 13-71 47-113 (270)
106 PRK15131 mannose-6-phosphate i 84.8 1.1 2.3E-05 32.8 3.0 20 35-54 238-257 (389)
107 PF04074 DUF386: Domain of unk 84.0 8.3 0.00018 24.2 7.6 60 6-65 61-148 (153)
108 PRK00364 groES co-chaperonin G 84.0 2.9 6.3E-05 24.8 4.1 23 35-57 56-78 (95)
109 KOG3706 Uncharacterized conser 83.9 1.1 2.3E-05 34.4 2.7 28 37-64 384-411 (629)
110 PHA02890 hypothetical protein; 83.5 13 0.00029 26.2 8.3 47 10-56 88-136 (278)
111 PRK13918 CRP/FNR family transc 83.3 7.2 0.00016 24.7 6.1 52 15-67 27-86 (202)
112 cd00320 cpn10 Chaperonin 10 Kd 81.7 3.5 7.5E-05 24.3 3.9 31 35-67 55-85 (93)
113 COG3097 Uncharacterized protei 81.6 1.7 3.6E-05 26.4 2.4 37 19-56 15-51 (106)
114 PRK04980 hypothetical protein; 80.0 2.9 6.2E-05 25.4 3.1 45 19-64 14-58 (102)
115 cd06919 Asp_decarbox Aspartate 79.6 1.4 3.1E-05 27.2 1.7 32 16-48 54-88 (111)
116 COG1898 RfbC dTDP-4-dehydrorha 78.4 16 0.00036 24.0 7.9 54 8-61 60-125 (173)
117 COG3758 Uncharacterized protei 78.2 6.9 0.00015 26.3 4.8 47 12-58 58-105 (193)
118 TIGR03697 NtcA_cyano global ni 78.1 14 0.0003 23.1 6.8 55 13-68 10-75 (193)
119 PRK11753 DNA-binding transcrip 78.0 15 0.00033 23.3 7.5 54 13-67 37-100 (211)
120 PRK15185 transcriptional regul 77.7 8.5 0.00018 27.6 5.4 43 13-57 48-90 (309)
121 PRK05467 Fe(II)-dependent oxyg 77.4 11 0.00025 25.7 5.8 35 23-57 130-164 (226)
122 smart00100 cNMP Cyclic nucleot 77.1 10 0.00022 20.8 5.4 43 4-46 23-71 (120)
123 PRK05449 aspartate alpha-decar 76.9 1.9 4E-05 27.2 1.7 30 17-47 56-88 (126)
124 COG2850 Uncharacterized conser 76.7 1.4 3E-05 32.5 1.2 25 36-60 181-205 (383)
125 PRK14533 groES co-chaperonin G 76.5 6.3 0.00014 23.3 3.8 24 35-58 51-74 (91)
126 TIGR00223 panD L-aspartate-alp 76.3 1.9 4.2E-05 27.2 1.6 30 17-47 56-88 (126)
127 PF14499 DUF4437: Domain of un 75.6 2.7 6E-05 29.2 2.4 49 12-60 189-238 (251)
128 PLN02288 mannose-6-phosphate i 75.0 2.7 5.9E-05 30.9 2.4 21 35-55 252-272 (394)
129 PRK09978 DNA-binding transcrip 74.4 15 0.00033 25.7 5.9 42 14-59 6-47 (274)
130 PF07385 DUF1498: Protein of u 74.0 9.7 0.00021 26.2 4.7 31 23-55 137-167 (225)
131 PF00166 Cpn10: Chaperonin 10 73.7 3 6.6E-05 24.4 2.0 31 35-67 55-85 (93)
132 cd00038 CAP_ED effector domain 72.4 14 0.0003 20.2 6.9 63 4-67 23-96 (115)
133 COG3822 ABC-type sugar transpo 71.7 11 0.00025 25.6 4.6 44 15-60 136-179 (225)
134 PF13759 2OG-FeII_Oxy_5: Putat 71.7 5 0.00011 23.3 2.6 20 36-55 68-87 (101)
135 PF02237 BPL_C: Biotin protein 71.5 12 0.00025 19.1 3.7 23 22-45 25-47 (48)
136 PF10162 G8: G8 domain; Inter 70.7 7.8 0.00017 23.7 3.4 27 39-65 10-36 (125)
137 PTZ00414 10 kDa heat shock pro 69.6 12 0.00026 22.6 3.9 24 35-58 60-83 (100)
138 PRK11161 fumarate/nitrate redu 68.6 30 0.00064 22.5 7.4 54 14-68 55-116 (235)
139 PLN02868 acyl-CoA thioesterase 68.3 20 0.00043 26.0 5.6 34 13-46 48-84 (413)
140 KOG0500 Cyclic nucleotide-gate 67.5 24 0.00053 27.2 5.9 67 4-70 336-415 (536)
141 PF00829 Ribosomal_L21p: Ribos 65.9 13 0.00028 22.0 3.5 21 25-47 3-23 (96)
142 PHA00663 hypothetical protein 65.3 7.5 0.00016 21.6 2.2 21 39-59 16-36 (68)
143 KOG3416 Predicted nucleic acid 64.8 9.7 0.00021 24.2 3.0 42 13-55 34-79 (134)
144 TIGR03027 pepcterm_export puta 64.1 5.6 0.00012 25.3 1.8 15 35-49 149-163 (165)
145 KOG1356 Putative transcription 64.0 3.1 6.8E-05 33.6 0.8 21 35-55 800-820 (889)
146 PRK15078 polysaccharide export 62.4 9.7 0.00021 27.7 3.0 29 34-62 237-265 (379)
147 PF02080 TrkA_C: TrkA-C domain 62.2 15 0.00032 19.5 3.1 30 14-46 27-56 (71)
148 PRK10402 DNA-binding transcrip 61.2 43 0.00094 21.8 8.7 64 4-68 37-111 (226)
149 PF01238 PMI_typeI: Phosphoman 59.0 7.3 0.00016 28.2 1.9 22 35-56 251-272 (373)
150 PF12988 DUF3872: Domain of un 57.7 30 0.00065 22.1 4.3 27 19-48 72-98 (137)
151 COG0853 PanD Aspartate 1-decar 56.3 4.4 9.6E-05 25.5 0.3 26 22-48 63-88 (126)
152 cd06555 ASCH_PF0470_like ASC-1 56.1 31 0.00067 21.0 4.1 24 25-49 20-43 (109)
153 PRK05573 rplU 50S ribosomal pr 56.1 27 0.00059 21.0 3.8 22 25-48 3-24 (103)
154 PF02261 Asp_decarbox: Asparta 55.0 2.6 5.5E-05 26.3 -0.9 30 17-47 56-88 (116)
155 TIGR03021 pilP_fam type IV pil 55.0 48 0.001 20.4 5.0 29 24-55 82-111 (119)
156 TIGR02219 phage_NlpC_fam putat 54.7 7.2 0.00016 24.1 1.1 11 37-47 76-86 (134)
157 COG5583 Uncharacterized small 54.7 22 0.00048 19.2 2.8 27 23-50 24-50 (54)
158 cd06552 ASCH_yqfb_like ASC-1 h 54.2 33 0.00072 19.6 3.9 31 19-50 11-41 (100)
159 KOG2130 Phosphatidylserine-spe 53.7 24 0.00052 26.0 3.8 24 36-59 265-288 (407)
160 PRK10838 spr outer membrane li 53.4 7.8 0.00017 25.8 1.2 14 37-50 128-141 (190)
161 PF10017 Methyltransf_33: Hist 52.7 52 0.0011 20.1 5.1 35 13-47 57-91 (127)
162 PRK09774 fec operon regulator 51.5 83 0.0018 22.1 6.5 34 16-49 193-227 (319)
163 TIGR02480 fliN flagellar motor 50.6 15 0.00033 20.6 2.0 30 23-55 17-46 (77)
164 COG0234 GroS Co-chaperonin Gro 50.5 25 0.00054 21.2 2.9 25 34-58 55-79 (96)
165 COG0186 RpsQ Ribosomal protein 50.4 40 0.00086 19.9 3.7 33 27-61 47-83 (87)
166 TIGR03028 EpsE polysaccharide 50.1 20 0.00043 24.2 2.8 26 35-62 148-173 (239)
167 PRK09391 fixK transcriptional 50.0 71 0.0015 20.9 8.9 53 14-67 56-114 (230)
168 KOG0025 Zn2+-binding dehydroge 49.7 23 0.0005 25.8 3.1 38 22-60 84-121 (354)
169 COG0034 PurF Glutamine phospho 49.2 68 0.0015 24.5 5.6 55 18-72 197-259 (470)
170 PLN03192 Voltage-dependent pot 48.0 61 0.0013 25.7 5.5 41 4-44 403-448 (823)
171 KOG4143 Sigma receptor and C-8 47.1 16 0.00034 24.7 1.8 45 14-58 120-164 (218)
172 KOG0572 Glutamine phosphoribos 45.8 1.3E+02 0.0029 22.8 7.2 37 15-51 201-237 (474)
173 COG0664 Crp cAMP-binding prote 45.4 59 0.0013 20.0 4.3 53 14-67 41-102 (214)
174 TIGR00061 L21 ribosomal protei 45.3 48 0.001 19.9 3.7 29 25-55 2-35 (101)
175 TIGR02466 conserved hypothetic 45.1 61 0.0013 21.6 4.5 16 39-54 167-182 (201)
176 KOG3995 3-hydroxyanthranilate 44.3 75 0.0016 22.2 4.8 47 13-61 226-272 (279)
177 PF13550 Phage-tail_3: Putativ 43.6 53 0.0012 19.9 3.8 32 24-57 128-160 (164)
178 PRK09392 ftrB transcriptional 43.5 90 0.0019 20.2 7.0 54 13-67 47-108 (236)
179 PF10983 DUF2793: Protein of u 42.6 30 0.00065 20.3 2.4 27 37-63 27-53 (87)
180 PF03038 Herpes_UL95: UL95 fam 42.6 30 0.00065 25.3 2.9 30 18-48 302-333 (348)
181 cd04712 BAH_DCM_I BAH, or Brom 41.9 63 0.0014 20.0 3.9 17 37-53 5-21 (130)
182 PF00877 NLPC_P60: NlpC/P60 fa 41.4 17 0.00036 21.0 1.2 12 37-48 51-62 (105)
183 PF00667 FAD_binding_1: FAD bi 41.4 21 0.00045 23.6 1.8 24 25-50 31-55 (219)
184 COG3712 FecR Fe2+-dicitrate se 41.4 34 0.00073 24.8 2.9 39 8-47 187-228 (322)
185 KOG1641 Mitochondrial chaperon 41.1 82 0.0018 19.2 4.2 24 35-58 64-87 (104)
186 PF14326 DUF4384: Domain of un 40.8 66 0.0014 18.0 4.5 52 8-59 11-68 (83)
187 PF10377 ATG11: Autophagy-rela 40.8 31 0.00068 21.4 2.4 36 36-71 41-81 (129)
188 PF09926 DUF2158: Uncharacteri 40.6 21 0.00046 19.0 1.4 14 38-51 1-14 (53)
189 PF09356 Phage_BR0599: Phage c 40.5 13 0.00028 21.3 0.6 30 25-55 29-58 (80)
190 TIGR02656 cyanin_plasto plasto 40.5 36 0.00077 19.7 2.5 22 45-66 63-84 (99)
191 TIGR02375 pseudoazurin pseudoa 40.4 35 0.00076 20.8 2.6 12 35-46 16-27 (116)
192 COG4043 Preprotein translocase 40.4 61 0.0013 19.9 3.5 24 25-49 22-45 (111)
193 COG3128 PiuC Uncharacterized i 40.4 57 0.0012 22.3 3.7 35 23-57 133-167 (229)
194 PHA00672 hypothetical protein 39.6 1E+02 0.0022 19.8 5.1 43 15-59 67-109 (152)
195 PF00054 Laminin_G_1: Laminin 38.8 87 0.0019 18.7 4.8 42 16-59 22-63 (131)
196 KOG1686 Mitochondrial/chloropl 37.6 94 0.002 20.2 4.3 43 22-66 25-67 (151)
197 cd01764 Urm1 Urm1-like ubuitin 37.5 35 0.00076 19.9 2.2 29 20-49 62-91 (94)
198 COG1935 Uncharacterized conser 37.0 20 0.00044 22.4 1.1 11 36-46 37-47 (122)
199 PF00122 E1-E2_ATPase: E1-E2 A 36.8 18 0.00039 23.5 0.9 16 37-52 51-66 (230)
200 COG5258 GTPBP1 GTPase [General 36.7 1.1E+02 0.0024 23.4 5.1 40 18-58 356-395 (527)
201 smart00797 AHS2 Allophanate hy 36.2 1.5E+02 0.0033 20.8 6.0 52 9-60 39-97 (280)
202 PF10949 DUF2777: Protein of u 36.0 1.3E+02 0.0029 20.1 5.8 26 23-50 64-89 (185)
203 PF15428 Imm14: Immunity prote 35.8 23 0.00049 21.4 1.2 11 39-49 1-11 (129)
204 PF01987 AIM24: Mitochondrial 35.3 78 0.0017 20.6 3.8 44 16-59 131-176 (215)
205 PF05257 CHAP: CHAP domain; I 35.2 98 0.0021 18.3 4.2 33 36-68 61-99 (124)
206 COG0756 Dut dUTPase [Nucleotid 35.0 43 0.00094 21.6 2.4 34 18-52 20-54 (148)
207 CHL00075 rpl21 ribosomal prote 35.0 77 0.0017 19.3 3.4 20 26-47 6-25 (108)
208 PF05721 PhyH: Phytanoyl-CoA d 34.9 47 0.001 20.4 2.6 20 35-54 181-200 (211)
209 PF10618 Tail_tube: Phage tail 34.7 1.1E+02 0.0024 18.7 4.2 26 21-50 5-30 (119)
210 TIGR00062 L27 ribosomal protei 34.0 1E+02 0.0022 18.1 4.0 42 18-64 29-70 (83)
211 PRK06788 flagellar motor switc 33.8 22 0.00047 22.1 0.9 34 22-58 42-75 (119)
212 PRK05610 rpsQ 30S ribosomal pr 33.8 85 0.0019 18.2 3.4 25 36-60 52-80 (84)
213 PF14604 SH3_9: Variant SH3 do 33.6 49 0.0011 16.7 2.1 24 35-58 12-36 (49)
214 cd00174 SH3 Src homology 3 dom 33.6 44 0.00095 16.0 1.9 24 35-58 15-39 (54)
215 COG1329 Transcriptional regula 33.6 1E+02 0.0022 20.4 4.0 36 36-71 3-44 (166)
216 TIGR02876 spore_yqfD sporulati 33.1 57 0.0012 23.8 3.1 27 15-46 197-223 (382)
217 PF02563 Poly_export: Polysacc 32.3 29 0.00063 19.4 1.2 12 35-46 10-21 (82)
218 COG1977 MoaD Molybdopterin con 32.2 68 0.0015 18.2 2.8 14 35-48 66-80 (84)
219 PRK05435 rpmA 50S ribosomal pr 31.8 1.1E+02 0.0024 17.9 4.6 42 18-64 29-70 (82)
220 KOG2131 Uncharacterized conser 31.8 27 0.00059 26.1 1.2 18 36-53 270-287 (427)
221 cd04867 TGS_YchF_C TGS_YchF_C: 31.7 22 0.00048 20.8 0.6 22 24-47 61-82 (83)
222 PF01052 SpoA: Surface present 31.7 18 0.00038 19.9 0.2 32 23-57 17-50 (77)
223 PRK15175 Vi polysaccharide exp 31.4 57 0.0012 23.7 2.8 42 17-59 199-246 (355)
224 KOG4600 Mitochondrial ribosoma 31.3 1.1E+02 0.0024 19.7 3.8 46 15-65 53-98 (144)
225 PF11302 DUF3104: Protein of u 31.0 37 0.00081 19.5 1.5 15 36-50 4-18 (75)
226 KOG1113 cAMP-dependent protein 30.9 59 0.0013 24.0 2.8 32 13-44 280-311 (368)
227 PF01426 BAH: BAH domain; Int 30.8 70 0.0015 18.4 2.8 14 37-50 2-15 (119)
228 PF14623 Vint: Hint-domain 30.8 74 0.0016 20.9 3.0 30 21-50 3-35 (162)
229 COG2905 Predicted signal-trans 30.8 83 0.0018 24.8 3.7 35 13-47 47-81 (610)
230 PRK06033 hypothetical protein; 30.4 30 0.00065 19.9 1.1 33 23-58 16-50 (83)
231 PF06577 DUF1134: Protein of u 30.4 72 0.0016 20.9 2.9 33 21-55 109-141 (160)
232 cd05829 Sortase_E Sortase E (S 30.3 84 0.0018 19.5 3.2 42 15-59 48-96 (144)
233 COG5636 Uncharacterized conser 30.2 28 0.00061 24.3 1.0 19 37-55 262-280 (284)
234 PF11651 P22_CoatProtein: P22 29.6 1.1E+02 0.0023 22.6 4.1 32 25-58 248-291 (414)
235 TIGR03805 beta_helix_1 paralle 29.3 35 0.00076 24.1 1.4 15 37-51 7-21 (314)
236 PF11356 Pilus_PilP: Type IV p 29.0 94 0.002 17.2 3.0 27 23-52 41-68 (87)
237 smart00783 A_amylase_inhib Alp 28.8 1.2E+02 0.0025 17.2 3.5 17 34-51 41-57 (69)
238 PRK08916 flagellar motor switc 28.6 31 0.00068 21.3 1.0 34 22-58 53-86 (116)
239 TIGR00022 uncharacterized prot 28.6 69 0.0015 19.9 2.6 23 7-29 62-84 (142)
240 PF15603 Imm45: Immunity prote 28.6 1.3E+02 0.0027 17.5 4.0 31 22-54 7-37 (82)
241 COG4079 Uncharacterized protei 28.4 1.9E+02 0.0041 20.6 4.8 30 37-66 261-290 (293)
242 PF07653 SH3_2: Variant SH3 do 28.3 73 0.0016 16.2 2.3 24 35-58 15-40 (55)
243 PRK10533 putative lipoprotein; 28.2 57 0.0012 21.6 2.2 17 14-30 133-149 (171)
244 PRK12278 50S ribosomal protein 28.1 1.1E+02 0.0025 20.9 3.7 28 26-55 4-36 (221)
245 PRK11479 hypothetical protein; 27.6 38 0.00082 23.9 1.4 14 36-49 63-76 (274)
246 PF05382 Amidase_5: Bacterioph 27.5 52 0.0011 21.0 1.9 11 36-46 74-84 (145)
247 PF06251 Caps_synth_GfcC: Caps 27.5 50 0.0011 22.0 1.9 14 35-48 190-203 (229)
248 COG2501 S4-like RNA binding pr 27.5 27 0.00058 20.0 0.5 28 19-48 33-63 (73)
249 PF01476 LysM: LysM domain; I 27.4 33 0.00072 16.3 0.8 10 38-47 35-44 (44)
250 PLN02499 glycerol-3-phosphate 27.3 29 0.00063 26.6 0.8 17 37-53 349-365 (498)
251 PF02327 BChl_A: Bacteriochlor 27.3 2.3E+02 0.0049 20.5 5.1 48 17-66 69-116 (357)
252 PF05118 Asp_Arg_Hydrox: Aspar 27.3 1.7E+02 0.0036 18.5 6.2 49 16-66 107-157 (163)
253 PF14453 ThiS-like: ThiS-like 27.3 42 0.00092 18.2 1.2 26 18-49 31-57 (57)
254 PF07828 PA-IL: PA-IL-like pro 27.3 61 0.0013 20.3 2.1 25 22-46 3-28 (121)
255 COG2013 Uncharacterized conser 27.1 2.1E+02 0.0046 19.6 5.0 43 16-58 132-176 (227)
256 cd03699 lepA_II lepA_II: This 27.1 96 0.0021 17.3 2.8 17 34-50 56-72 (86)
257 PRK08433 flagellar motor switc 26.6 37 0.00079 20.8 1.0 33 23-58 41-75 (111)
258 cd04721 BAH_plant_1 BAH, or Br 26.4 1.2E+02 0.0026 18.7 3.4 13 36-48 6-18 (130)
259 PHA02872 EFc gene family prote 25.9 1.7E+02 0.0038 18.2 5.0 43 13-55 59-109 (124)
260 PF09953 DUF2187: Uncharacteri 25.8 78 0.0017 17.3 2.1 17 38-54 4-20 (57)
261 COG5422 ROM1 RhoGEF, Guanine n 25.8 1.1E+02 0.0023 25.8 3.6 13 1-13 1097-1109(1175)
262 smart00702 P4Hc Prolyl 4-hydro 25.3 99 0.0021 19.3 2.9 27 35-61 140-166 (178)
263 KOG3905 Dynein light intermedi 25.2 36 0.00077 25.5 0.9 21 36-56 298-318 (473)
264 cd06199 SiR Cytochrome p450- l 25.0 63 0.0014 23.0 2.1 17 35-51 28-45 (360)
265 PF06898 YqfD: Putative stage 24.9 90 0.0019 22.7 2.9 26 15-45 200-225 (385)
266 smart00456 WW Domain with 2 co 24.9 61 0.0013 14.5 1.4 21 46-69 1-21 (32)
267 KOG1491 Predicted GTP-binding 24.6 62 0.0013 24.1 2.0 16 34-49 375-390 (391)
268 COG0361 InfA Translation initi 24.4 74 0.0016 18.2 2.0 14 35-48 44-57 (75)
269 PF04970 LRAT: Lecithin retino 24.4 82 0.0018 18.8 2.3 21 36-56 5-25 (125)
270 PF02408 CUB_2: CUB-like domai 24.2 70 0.0015 19.1 2.0 19 41-59 33-51 (120)
271 PRK08983 fliN flagellar motor 24.1 43 0.00093 21.0 1.0 33 23-58 60-94 (127)
272 PF04004 Leo1: Leo1-like prote 24.0 2.1E+02 0.0045 18.4 6.2 54 15-70 67-128 (171)
273 PF13403 Hint_2: Hint domain 23.8 1.9E+02 0.0042 18.0 4.5 32 21-52 4-35 (147)
274 TIGR00686 phnA alkylphosphonat 23.8 1.3E+02 0.0028 18.6 3.0 35 26-63 42-81 (109)
275 PF05708 DUF830: Orthopoxvirus 23.8 48 0.001 20.3 1.2 11 38-48 2-12 (158)
276 PF06940 DUF1287: Domain of un 23.6 99 0.0021 20.4 2.6 25 36-60 105-131 (164)
277 smart00326 SH3 Src homology 3 23.4 84 0.0018 15.0 1.9 23 35-57 18-41 (58)
278 PF01356 A_amylase_inhib: Alph 23.3 1.1E+02 0.0024 17.2 2.5 13 35-47 41-53 (68)
279 PF11132 SplA: Transcriptional 23.2 52 0.0011 18.9 1.2 11 36-46 4-14 (75)
280 COG1018 Hmp Flavodoxin reducta 22.9 54 0.0012 22.7 1.4 31 37-68 87-118 (266)
281 PF01513 NAD_kinase: ATP-NAD k 22.8 2.6E+02 0.0057 19.2 5.7 36 15-51 242-278 (285)
282 PF13510 Fer2_4: 2Fe-2S iron-s 22.7 57 0.0012 18.4 1.3 19 24-44 3-21 (82)
283 PRK10671 copA copper exporting 22.6 1.8E+02 0.004 23.2 4.4 19 37-55 340-358 (834)
284 cd06207 CyPoR_like NADPH cytoc 22.5 81 0.0018 22.6 2.3 17 35-51 28-45 (382)
285 smart00739 KOW KOW (Kyprides, 22.4 60 0.0013 13.8 1.1 13 38-50 2-14 (28)
286 cd00118 LysM Lysin domain, fou 22.4 53 0.0011 14.5 1.0 12 36-47 35-46 (46)
287 CHL00121 rpl27 ribosomal prote 22.4 1.8E+02 0.0039 17.1 3.7 41 19-64 30-70 (86)
288 PF05203 Hom_end_hint: Hom_end 22.2 2.6E+02 0.0055 18.9 4.5 47 22-68 4-52 (215)
289 COG0791 Spr Cell wall-associat 22.1 56 0.0012 20.9 1.3 12 37-48 138-149 (197)
290 PRK13914 invasion associated s 22.0 55 0.0012 25.0 1.4 13 36-48 425-437 (481)
291 PRK03378 ppnK inorganic polyph 21.8 1.3E+02 0.0029 21.1 3.2 28 23-51 238-265 (292)
292 TIGR01494 ATPase_P-type ATPase 21.7 1E+02 0.0022 22.8 2.7 19 37-55 51-69 (499)
293 PF14452 Multi_ubiq: Multiubiq 21.7 1.5E+02 0.0033 16.0 3.5 20 34-53 46-66 (72)
294 COG1868 FliM Flagellar motor s 21.6 78 0.0017 23.0 2.0 42 23-67 262-303 (332)
295 PF13640 2OG-FeII_Oxy_3: 2OG-F 21.5 1.6E+02 0.0035 16.3 4.6 20 38-57 66-86 (100)
296 cd06206 bifunctional_CYPOR The 21.5 1.1E+02 0.0023 22.0 2.8 16 36-51 28-44 (384)
297 PRK00809 hypothetical protein; 21.3 1.1E+02 0.0024 19.3 2.6 10 37-46 34-43 (144)
298 COG0261 RplU Ribosomal protein 21.2 2.1E+02 0.0045 17.4 5.1 22 34-55 10-36 (103)
299 TIGR03784 marine_sortase sorta 21.1 1.4E+02 0.003 19.4 3.0 40 16-58 90-131 (174)
300 PF02938 GAD: GAD domain; Int 21.1 39 0.00084 19.5 0.4 14 37-50 74-87 (95)
301 PRK12335 tellurite resistance 21.1 2.8E+02 0.0061 18.9 6.3 46 13-58 32-82 (287)
302 TIGR02594 conserved hypothetic 21.1 2.2E+02 0.0047 17.5 4.2 12 37-48 73-84 (129)
303 PF08240 ADH_N: Alcohol dehydr 20.9 35 0.00076 19.6 0.1 27 21-48 37-63 (109)
304 TIGR01522 ATPase-IIA2_Ca golgi 20.8 1.4E+02 0.0031 24.1 3.5 19 37-55 134-152 (884)
305 PLN02935 Bifunctional NADH kin 20.8 1.3E+02 0.0028 23.3 3.1 26 23-49 443-468 (508)
306 PRK14077 pnk inorganic polypho 20.6 3E+02 0.0066 19.3 4.8 35 15-50 228-262 (287)
307 KOG0208 Cation transport ATPas 20.5 2E+02 0.0044 24.4 4.3 30 16-49 250-279 (1140)
308 PF01878 EVE: EVE domain; Int 20.3 62 0.0014 19.8 1.2 10 37-46 39-48 (143)
309 PF00018 SH3_1: SH3 domain; I 20.2 51 0.0011 16.3 0.7 24 35-58 13-37 (48)
310 TIGR01931 cysJ sulfite reducta 20.2 89 0.0019 24.1 2.2 17 35-51 265-282 (597)
311 cd04710 BAH_fungalPHD BAH, or 20.1 2.3E+02 0.005 17.7 3.8 22 27-51 4-25 (135)
312 TIGR03635 S17_bact 30S ribosom 20.1 68 0.0015 18.0 1.2 15 36-50 47-61 (71)
No 1
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=99.93 E-value=6.5e-26 Score=140.23 Aligned_cols=66 Identities=42% Similarity=0.895 Sum_probs=64.6
Q ss_pred CCcCCceEEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEe
Q 037642 1 WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE 67 (74)
Q Consensus 1 W~~~pg~~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~ 67 (74)
|+|+||+|++.++.+|+|+||+|+++++.++| +.++++|||+++||+|++++|+|.+++||+|++.
T Consensus 50 We~TpG~~r~~y~~~E~chil~G~v~~T~d~G-e~v~~~aGD~~~~~~G~~g~W~V~EtvrK~Yv~~ 115 (116)
T COG3450 50 WECTPGKFRVTYDEDEFCHILEGRVEVTPDGG-EPVEVRAGDSFVFPAGFKGTWEVLETVRKHYVIR 115 (116)
T ss_pred EEecCccceEEcccceEEEEEeeEEEEECCCC-eEEEEcCCCEEEECCCCeEEEEEeeeeEEEEEEe
Confidence 99999999999999999999999999999999 7999999999999999999999999999999985
No 2
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=99.90 E-value=1.6e-23 Score=120.35 Aligned_cols=63 Identities=40% Similarity=0.831 Sum_probs=60.2
Q ss_pred CCcCCceEEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEE
Q 037642 1 WGCSPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYY 64 (74)
Q Consensus 1 W~~~pg~~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y 64 (74)
|+|+||.+.+.++.+|++|||+|+++|+.++| ++++++|||+++||+|+.++|++.+++||+|
T Consensus 12 w~~~pg~~~~~~~~~E~~~vleG~v~it~~~G-~~~~~~aGD~~~~p~G~~~~w~v~~~vrK~Y 74 (74)
T PF05899_consen 12 WECTPGKFPWPYPEDEFFYVLEGEVTITDEDG-ETVTFKAGDAFFLPKGWTGTWEVREPVRKVY 74 (74)
T ss_dssp EEEECEEEEEEESSEEEEEEEEEEEEEEETTT-EEEEEETTEEEEE-TTEEEEEEEEEEEEEEE
T ss_pred EEECCceeEeeCCCCEEEEEEEeEEEEEECCC-CEEEEcCCcEEEECCCCEEEEEECeEEEEcC
Confidence 89999999999999999999999999999998 6899999999999999999999999999998
No 3
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=99.50 E-value=4.4e-13 Score=86.36 Aligned_cols=63 Identities=24% Similarity=0.395 Sum_probs=54.0
Q ss_pred CceEEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecC
Q 037642 5 PGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFEST 69 (74)
Q Consensus 5 pg~~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~ 69 (74)
++.|.|.++++|+.|||||+..+.++| +++..+|||+++||+|.+.+|.+....|.+|+.+-.
T Consensus 86 ~~~f~wtl~YDEi~~VlEG~L~i~~~G--~~~~A~~GDvi~iPkGs~I~fst~~~a~~~Yv~yPa 148 (152)
T PF06249_consen 86 KTSFPWTLTYDEIKYVLEGTLEISIDG--QTVTAKPGDVIFIPKGSTITFSTPDYARFFYVTYPA 148 (152)
T ss_dssp EEEEEEE-SSEEEEEEEEEEEEEEETT--EEEEEETT-EEEE-TT-EEEEEEEEEEEEEEEEEST
T ss_pred CCCccEEeecceEEEEEEeEEEEEECC--EEEEEcCCcEEEECCCCEEEEecCCCEEEEEEECCC
Confidence 456889999999999999999999886 589999999999999999999999999999998754
No 4
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=99.33 E-value=1.2e-11 Score=84.20 Aligned_cols=61 Identities=26% Similarity=0.360 Sum_probs=54.9
Q ss_pred CceEEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEe
Q 037642 5 PGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE 67 (74)
Q Consensus 5 pg~~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~ 67 (74)
...|.|+++++|+.|||+|++++++++ +++.++|||+++||+|..+.|......|.+|++.
T Consensus 166 ~~sf~wtl~~dEi~YVLEGe~~l~IdG--~t~~l~pGDvlfIPkGs~~hf~tp~~aRflyV~~ 226 (233)
T PRK15457 166 NAFFPWTLNYDEIDMVLEGELHVRHEG--ETMIAKAGDVMFIPKGSSIEFGTPSSVRFLYVAW 226 (233)
T ss_pred cCccceeccceEEEEEEEeEEEEEECC--EEEEeCCCcEEEECCCCeEEecCCCCeeEEEEEe
Confidence 356789999999999999999999987 5899999999999999999998888888888764
No 5
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.31 E-value=1.3e-11 Score=79.76 Aligned_cols=64 Identities=28% Similarity=0.425 Sum_probs=57.7
Q ss_pred CCceEEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecC
Q 037642 4 SPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFEST 69 (74)
Q Consensus 4 ~pg~~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~ 69 (74)
+|..|.|..++||+.|||||+..+.++|+ +...+|||+++||+|...++.+.+..+-.|+.+--
T Consensus 108 ~~~tf~wtl~yDe~d~VlEGrL~V~~~g~--tv~a~aGDvifiPKgssIefst~gea~flyvtyPa 171 (176)
T COG4766 108 KNTTFPWTLNYDEIDYVLEGRLHVRIDGR--TVIAGAGDVIFIPKGSSIEFSTTGEAKFLYVTYPA 171 (176)
T ss_pred ccccCcceecccceeEEEeeeEEEEEcCC--eEecCCCcEEEecCCCeEEEeccceEEEEEEEccc
Confidence 45667888889999999999999999995 69999999999999999999999999999986643
No 6
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.20 E-value=3.3e-10 Score=62.54 Aligned_cols=61 Identities=23% Similarity=0.334 Sum_probs=48.6
Q ss_pred cCCceE---EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEE
Q 037642 3 CSPGKF---QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYK 65 (74)
Q Consensus 3 ~~pg~~---~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~ 65 (74)
-+||.. +.|...+|+++||+|++++..++ +.+.+++||++++|+|..+.+...+.-...|+
T Consensus 5 ~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~--~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l 68 (71)
T PF07883_consen 5 LPPGGSIPPHRHPGEDEFFYVLSGEGTLTVDG--ERVELKPGDAIYIPPGVPHQVRNPGDEPARFL 68 (71)
T ss_dssp EETTEEEEEEEESSEEEEEEEEESEEEEEETT--EEEEEETTEEEEEETTSEEEEEEESSSEEEEE
T ss_pred ECCCCCCCCEECCCCCEEEEEEECCEEEEEcc--EEeEccCCEEEEECCCCeEEEEECCCCCEEEE
Confidence 456663 34444559999999999999887 57999999999999999999998875444443
No 7
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.09 E-value=1.4e-09 Score=67.53 Aligned_cols=61 Identities=28% Similarity=0.348 Sum_probs=50.4
Q ss_pred eEEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEE-EEEEEecC
Q 037642 7 KFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVD-KYYKFEST 69 (74)
Q Consensus 7 ~~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~-k~y~~~~~ 69 (74)
.++.|...+|+++||+|++.+.+++ +...+++||++++|+|..|...-.+... +++.+.++
T Consensus 50 ~~~~H~~~dE~~~Vl~G~g~v~~~~--~~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~~p 111 (127)
T COG0662 50 SLHHHHHRDEHWYVLEGTGKVTIGG--EEVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQSP 111 (127)
T ss_pred CcccccCcceEEEEEeeEEEEEECC--EEEEecCCCEEEECCCCcEEEEcCCCcceEEEEEecC
Confidence 3567777899999999999999998 5799999999999999999999887743 33334444
No 8
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.08 E-value=7.5e-10 Score=71.67 Aligned_cols=62 Identities=21% Similarity=0.234 Sum_probs=51.1
Q ss_pred CCceE----EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCC--CeEEEEEeeeEEEEEEEe
Q 037642 4 SPGKF----QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKG--LSCTWDVSVAVDKYYKFE 67 (74)
Q Consensus 4 ~pg~~----~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g--~~~~~~~~~~~~k~y~~~ 67 (74)
+||.+ ++|..++|++|||||+.++..+++ ...|+|||++-||+| .-|.+.-...+...|+.-
T Consensus 50 ~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~~--e~~lrpGD~~gFpAG~~~aHhliN~s~~~~~yL~v 117 (161)
T COG3837 50 EPGGESSLRHWHSAEDEFVYILEGEGTLREDGG--ETRLRPGDSAGFPAGVGNAHHLINRSDVILRYLEV 117 (161)
T ss_pred CCCCccccccccccCceEEEEEcCceEEEECCe--eEEecCCceeeccCCCcceeEEeecCCceEEEEEe
Confidence 56664 678889999999999999999997 489999999999999 666666666666666643
No 9
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.03 E-value=4.6e-09 Score=65.56 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=45.4
Q ss_pred ceEEEEEEecEEEEE-eCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEe
Q 037642 14 AEETCYLLKGKVKVY-PKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE 67 (74)
Q Consensus 14 ~~E~~~vleG~~~~~-~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~ 67 (74)
..|++|||+|++++. ++++ +.+.++|||.++||++.+|.|...++++-+.++.
T Consensus 55 ~~E~~yVL~G~~~~~~i~~g-~~~~L~aGD~i~~~~~~~H~~~N~e~~~~l~v~t 108 (125)
T PRK13290 55 HLEAVYCIEGEGEVEDLATG-EVHPIRPGTMYALDKHDRHYLRAGEDMRLVCVFN 108 (125)
T ss_pred CEEEEEEEeCEEEEEEcCCC-EEEEeCCCeEEEECCCCcEEEEcCCCEEEEEEEC
Confidence 469999999999999 7644 5799999999999999999999888776555554
No 10
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=98.95 E-value=1.2e-08 Score=61.14 Aligned_cols=61 Identities=23% Similarity=0.451 Sum_probs=49.6
Q ss_pred CCceEEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEE
Q 037642 4 SPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKF 66 (74)
Q Consensus 4 ~pg~~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~ 66 (74)
.||.|.+.+...|++-|++|.+++.+.+..+..++.+|+.|.+|++.+...++.+.. -|++
T Consensus 31 ~pGeY~F~T~~~E~M~vvsG~l~V~lpg~~ew~~~~aGesF~VpanssF~v~v~~~~--~Y~C 91 (94)
T PF06865_consen 31 LPGEYTFGTSAPERMEVVSGELEVKLPGEDEWQTYSAGESFEVPANSSFDVKVKEPT--AYLC 91 (94)
T ss_dssp -SECEEEEESS-EEEEEEESEEEEEETT-SS-EEEETT-EEEE-TTEEEEEEESS-E--EEEE
T ss_pred eeeEEEEcCCCCEEEEEEEeEEEEEcCCCcccEEeCCCCeEEECCCCeEEEEECcce--eeEE
Confidence 489999999999999999999999999987789999999999999999999999864 4544
No 11
>PRK10579 hypothetical protein; Provisional
Probab=98.94 E-value=1.8e-08 Score=60.45 Aligned_cols=61 Identities=20% Similarity=0.447 Sum_probs=55.1
Q ss_pred CCceEEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEE
Q 037642 4 SPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKF 66 (74)
Q Consensus 4 ~pg~~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~ 66 (74)
.||.|.+.+...|++-|++|.+++.+.+..+...+++|+.|.+|++.+...++.+.. -|++
T Consensus 31 ~pGey~F~T~~~E~MeivsG~l~V~Lpg~~ew~~~~aG~sF~VpanssF~l~v~~~t--~Y~C 91 (94)
T PRK10579 31 AEGEYTFSTAEPEEMTVISGALNVLLPGATDWQVYEAGEVFNVPGHSEFHLQVAEPT--SYLC 91 (94)
T ss_pred eeeEEEEcCCCcEEEEEEeeEEEEECCCCcccEEeCCCCEEEECCCCeEEEEECcce--eeEE
Confidence 489999999999999999999999999987789999999999999999999998864 4554
No 12
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.88 E-value=7e-08 Score=57.55 Aligned_cols=58 Identities=24% Similarity=0.370 Sum_probs=42.5
Q ss_pred EEEe-cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee--eEEEEEEEe
Q 037642 8 FQLK-FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV--AVDKYYKFE 67 (74)
Q Consensus 8 ~~~~-~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~--~~~k~y~~~ 67 (74)
+..| .+..+++||++|++++.+++ +.+.++|||+++||+|..+.+.... +....++.-
T Consensus 16 ~~~h~h~~~~i~~v~~G~~~~~~~~--~~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~ 76 (136)
T PF02311_consen 16 FPPHWHDFYEIIYVLSGEGTLHIDG--QEYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYF 76 (136)
T ss_dssp EEEETT-SEEEEEEEEE-EEEEETT--EEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE
T ss_pred cCCEECCCEEEEEEeCCEEEEEECC--EEEEEECCEEEEecCCccEEEecCCCCCEEEEEEEE
Confidence 3344 56899999999999999999 4799999999999999999999999 665555543
No 13
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=98.86 E-value=5.5e-08 Score=61.07 Aligned_cols=67 Identities=21% Similarity=0.338 Sum_probs=50.4
Q ss_pred CCceE---EEecCceEEEEEEecEEEEEe--CCC------ceEEE--ECCCcEEEEcCCCeEEEEEe--eeEEEEEEEec
Q 037642 4 SPGKF---QLKFDAEETCYLLKGKVKVYP--KGS------SDWVE--FGAGDLVTIPKGLSCTWDVS--VAVDKYYKFES 68 (74)
Q Consensus 4 ~pg~~---~~~~~~~E~~~vleG~~~~~~--~~g------~e~~~--~~~GD~v~~p~g~~~~~~~~--~~~~k~y~~~~ 68 (74)
+||.. +|| +..|++||++|++++.+ .++ ..... +++||+++||+|..+.+.-. .+...++++..
T Consensus 42 ~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~ 120 (144)
T PF00190_consen 42 EPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDT 120 (144)
T ss_dssp ETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEE
T ss_pred hcCCccceeEe-eeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEEC
Confidence 56765 678 99999999999999654 221 12344 99999999999999999999 57777777776
Q ss_pred CCC
Q 037642 69 TSS 71 (74)
Q Consensus 69 ~~~ 71 (74)
.+.
T Consensus 121 ~~~ 123 (144)
T PF00190_consen 121 NNP 123 (144)
T ss_dssp SST
T ss_pred CCC
Confidence 554
No 14
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=98.84 E-value=3.1e-08 Score=64.50 Aligned_cols=47 Identities=23% Similarity=0.336 Sum_probs=42.5
Q ss_pred ecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee
Q 037642 11 KFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA 59 (74)
Q Consensus 11 ~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~ 59 (74)
+.+..|++|||+|++++.+++ +.+.+++||.++||++..|.|...+.
T Consensus 125 ~h~~~E~~~Vl~G~~~~~~~~--~~~~l~~Gd~~~~~~~~~H~~~n~~~ 171 (185)
T PRK09943 125 KHQGEEIGTVLEGEIVLTING--QDYHLVAGQSYAINTGIPHSFSNTSA 171 (185)
T ss_pred ccCCcEEEEEEEeEEEEEECC--EEEEecCCCEEEEcCCCCeeeeCCCC
Confidence 456789999999999999988 57999999999999999999998654
No 15
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.75 E-value=3.8e-08 Score=64.84 Aligned_cols=57 Identities=16% Similarity=0.304 Sum_probs=45.7
Q ss_pred CCc-eEEEec-CceEEEEEEecEEEEEeCCCc--eEEEECCCcEEEEcCCCeEEEEEeeeE
Q 037642 4 SPG-KFQLKF-DAEETCYLLKGKVKVYPKGSS--DWVEFGAGDLVTIPKGLSCTWDVSVAV 60 (74)
Q Consensus 4 ~pg-~~~~~~-~~~E~~~vleG~~~~~~~~g~--e~~~~~~GD~v~~p~g~~~~~~~~~~~ 60 (74)
-|| ...||. +.+|++|+|+|.+.|.+.+++ +.+.|++||++++|+|.+|.+.-.+..
T Consensus 42 Gpn~r~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHsP~r~~~t 102 (177)
T PRK13264 42 GPNARTDFHYDPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHSPQREAGS 102 (177)
T ss_pred cCCcccccccCCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcCCccCCCe
Confidence 356 355665 469999999999999994321 379999999999999999999876554
No 16
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.74 E-value=7.1e-08 Score=59.51 Aligned_cols=55 Identities=29% Similarity=0.459 Sum_probs=45.6
Q ss_pred CCceE-EEec-C-ceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeE
Q 037642 4 SPGKF-QLKF-D-AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60 (74)
Q Consensus 4 ~pg~~-~~~~-~-~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~ 60 (74)
+||.. .+|. + .++..|||+|.+++..++ +.+.+++||++++|+|..|.+...+..
T Consensus 51 ~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g--~~~~l~~Gd~i~ip~g~~H~~~a~~~~ 108 (131)
T COG1917 51 EPGAVIPWHTHPLGEQTIYVLEGEGTVQLEG--EKKELKAGDVIIIPPGVVHGLKAVEDE 108 (131)
T ss_pred CCCcccccccCCCcceEEEEEecEEEEEecC--CceEecCCCEEEECCCCeeeeccCCCC
Confidence 34543 3443 3 679999999999999994 579999999999999999999887765
No 17
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.73 E-value=1e-07 Score=65.51 Aligned_cols=64 Identities=20% Similarity=0.214 Sum_probs=52.9
Q ss_pred CCceEE---EecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecC
Q 037642 4 SPGKFQ---LKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFEST 69 (74)
Q Consensus 4 ~pg~~~---~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~ 69 (74)
+||... .+...+|..|||+|++.+.+++ +...+++||+++||++.++.....+.-.-.|++++.
T Consensus 187 ~PG~~~~~~~~H~~eh~~yiL~G~G~~~~~g--~~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~ykd 253 (260)
T TIGR03214 187 EPGASHPYIETHVMEHGLYVLEGKGVYNLDN--NWVPVEAGDYIWMGAYCPQACYAGGRGEFRYLLYKD 253 (260)
T ss_pred CCCcccCCcccccceeEEEEEeceEEEEECC--EEEEecCCCEEEECCCCCEEEEecCCCcEEEEEEcc
Confidence 466642 3445678999999999999998 589999999999999999999998776677777653
No 18
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=98.71 E-value=9.2e-08 Score=60.19 Aligned_cols=55 Identities=22% Similarity=0.280 Sum_probs=43.5
Q ss_pred CCceE---EEecCceEEEEEEecEEEEEeCCCc----eEEEECCCcEEEEcCCCeEEEEEee
Q 037642 4 SPGKF---QLKFDAEETCYLLKGKVKVYPKGSS----DWVEFGAGDLVTIPKGLSCTWDVSV 58 (74)
Q Consensus 4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~~g~----e~~~~~~GD~v~~p~g~~~~~~~~~ 58 (74)
+||.. ++|....|++|||+|++++.+.+.. ....+++||+++||+|..|.+...+
T Consensus 38 ~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~ 99 (146)
T smart00835 38 EPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSG 99 (146)
T ss_pred cCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCEEEEEcCC
Confidence 45553 3454578999999999999986631 1688999999999999999998754
No 19
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.70 E-value=5.4e-08 Score=63.21 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=43.5
Q ss_pred EEEec-CceEEEEEEecEEEEEeCCCc--eEEEECCCcEEEEcCCCeEEEEEeeeE
Q 037642 8 FQLKF-DAEETCYLLKGKVKVYPKGSS--DWVEFGAGDLVTIPKGLSCTWDVSVAV 60 (74)
Q Consensus 8 ~~~~~-~~~E~~~vleG~~~~~~~~g~--e~~~~~~GD~v~~p~g~~~~~~~~~~~ 60 (74)
+.||. +.+|++|+|+|++.|.+.+++ +.+.|++||++++|+|.+|.+.-.+..
T Consensus 41 ~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvpHsP~r~~~t 96 (159)
T TIGR03037 41 TDFHDDPGEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSPQRPAGS 96 (159)
T ss_pred cccccCCCceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCCcccccCCCc
Confidence 34665 479999999999999775532 279999999999999999999876654
No 20
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=98.66 E-value=1.8e-07 Score=67.27 Aligned_cols=65 Identities=15% Similarity=0.309 Sum_probs=49.3
Q ss_pred CCceE---EEecCceEEEEEEecEEEEEeCC---CceEEEECCCcEEEEcCCCeEEEEEeee-EEEEEEEec
Q 037642 4 SPGKF---QLKFDAEETCYLLKGKVKVYPKG---SSDWVEFGAGDLVTIPKGLSCTWDVSVA-VDKYYKFES 68 (74)
Q Consensus 4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~~---g~e~~~~~~GD~v~~p~g~~~~~~~~~~-~~k~y~~~~ 68 (74)
+||.. ++|...+|++|||+|++++++.+ ..++..+++||+++||+|..|..+-.+. -.+++.+..
T Consensus 253 ~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~ 324 (367)
T TIGR03404 253 EPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFK 324 (367)
T ss_pred CCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEEC
Confidence 45653 67788899999999999999742 1257899999999999999999986653 234444433
No 21
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=98.65 E-value=3.1e-07 Score=61.05 Aligned_cols=59 Identities=20% Similarity=0.264 Sum_probs=44.3
Q ss_pred EEec--CceEEEEEEecEEEEEeCCCc---eEEEECCCcEEEEcCCCeEEEEEee--eEEEEEEEe
Q 037642 9 QLKF--DAEETCYLLKGKVKVYPKGSS---DWVEFGAGDLVTIPKGLSCTWDVSV--AVDKYYKFE 67 (74)
Q Consensus 9 ~~~~--~~~E~~~vleG~~~~~~~~g~---e~~~~~~GD~v~~p~g~~~~~~~~~--~~~k~y~~~ 67 (74)
++|. +..|++|||+|++.+.+++.. ....++|||+++||+|..|...-.+ +++.+.++.
T Consensus 90 H~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~iN~G~epl~fl~v~p 155 (191)
T PRK04190 90 HFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRSVNTGDEPLVFLACYP 155 (191)
T ss_pred eEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEeEECCCCCEEEEEEEc
Confidence 3454 557999999999999986531 2589999999999999999887644 454444333
No 22
>PRK11171 hypothetical protein; Provisional
Probab=98.59 E-value=3.9e-07 Score=62.81 Aligned_cols=64 Identities=23% Similarity=0.267 Sum_probs=52.3
Q ss_pred CCceE-EE--ecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecC
Q 037642 4 SPGKF-QL--KFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFEST 69 (74)
Q Consensus 4 ~pg~~-~~--~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~ 69 (74)
+||.. .+ +....|.+|||+|++++.+++ +.+.+++||++.||++..+.+.-.+.-...|++++.
T Consensus 192 ~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~~~--~~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~k~ 258 (266)
T PRK11171 192 EPGASIPFVETHVMEHGLYVLEGKGVYRLNN--DWVEVEAGDFIWMRAYCPQACYAGGPGPFRYLLYKD 258 (266)
T ss_pred CCCCEEccCcCCCceEEEEEEeCEEEEEECC--EEEEeCCCCEEEECCCCCEEEECCCCCcEEEEEEcc
Confidence 45543 33 355789999999999999988 579999999999999999999987666677776653
No 23
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=98.57 E-value=4.1e-07 Score=66.81 Aligned_cols=61 Identities=15% Similarity=0.195 Sum_probs=48.4
Q ss_pred CCceE---EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee--eEEEEEEE
Q 037642 4 SPGKF---QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV--AVDKYYKF 66 (74)
Q Consensus 4 ~pg~~---~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~--~~~k~y~~ 66 (74)
.||.. ++|....|.+|||+|++++.+++ +++.+++||.++||+|.+|.|...+ +++-+.+.
T Consensus 384 ~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg--~~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~ 449 (468)
T TIGR01479 384 KPGEKLSLQMHHHRAEHWIVVSGTARVTIGD--ETLLLTENESTYIPLGVIHRLENPGKIPLELIEVQ 449 (468)
T ss_pred CCCCccCccccCCCceEEEEEeeEEEEEECC--EEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEE
Confidence 45652 45666788889999999999999 5799999999999999999999755 44433333
No 24
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.55 E-value=6.1e-07 Score=61.72 Aligned_cols=43 Identities=23% Similarity=0.384 Sum_probs=39.0
Q ss_pred ceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee
Q 037642 14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV 58 (74)
Q Consensus 14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~ 58 (74)
.+|++|||+|++++++++ +...|++||.++||+|..++|.-..
T Consensus 80 ~ee~iyVl~G~l~v~~~g--~~~~L~~Gd~~y~pa~~~H~~~N~~ 122 (260)
T TIGR03214 80 IETFLFVISGEVNVTAEG--ETHELREGGYAYLPPGSKWTLANAQ 122 (260)
T ss_pred eEEEEEEEeCEEEEEECC--EEEEECCCCEEEECCCCCEEEEECC
Confidence 489999999999999988 5799999999999999999997644
No 25
>PRK11171 hypothetical protein; Provisional
Probab=98.53 E-value=7.4e-07 Score=61.43 Aligned_cols=44 Identities=18% Similarity=0.318 Sum_probs=39.8
Q ss_pred CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee
Q 037642 13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV 58 (74)
Q Consensus 13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~ 58 (74)
..+|++|||+|.+++.+++ +++.|++||.++||++..|++....
T Consensus 82 ~~eE~~~VlsG~l~v~~~g--~~~~L~~GDsi~~p~~~~H~~~N~g 125 (266)
T PRK11171 82 GAETFLFVVEGEITLTLEG--KTHALSEGGYAYLPPGSDWTLRNAG 125 (266)
T ss_pred CceEEEEEEeCEEEEEECC--EEEEECCCCEEEECCCCCEEEEECC
Confidence 4589999999999999988 5799999999999999999998644
No 26
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=98.53 E-value=4.8e-07 Score=66.99 Aligned_cols=56 Identities=21% Similarity=0.259 Sum_probs=47.0
Q ss_pred EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee--eEEEEEEE
Q 037642 9 QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV--AVDKYYKF 66 (74)
Q Consensus 9 ~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~--~~~k~y~~ 66 (74)
++|....|+.+||+|++++++++ +++.+++||.++||+|.+|.|.-.+ +++-+.+.
T Consensus 401 ~~H~~~~E~~~VlsG~~~v~idg--~~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~ 458 (478)
T PRK15460 401 QMHHHRAEHWVVVAGTAKVTIDG--DIKLLGENESIYIPLGATHCLENPGKIPLDLIEVR 458 (478)
T ss_pred CCCCCCceEEEEEeeEEEEEECC--EEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEE
Confidence 55666789999999999999999 5799999999999999999999764 45444443
No 27
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=98.47 E-value=1.2e-06 Score=56.29 Aligned_cols=49 Identities=20% Similarity=0.282 Sum_probs=44.6
Q ss_pred EEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee
Q 037642 8 FQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV 58 (74)
Q Consensus 8 ~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~ 58 (74)
+++|....|..+|++|.+.+++++ +...+.+||.++||+|..|+....+
T Consensus 78 lq~H~~R~E~W~Vv~G~a~v~~~~--~~~~~~~g~sv~Ip~g~~H~i~n~g 126 (151)
T PF01050_consen 78 LQYHHHRSEHWTVVSGTAEVTLDD--EEFTLKEGDSVYIPRGAKHRIENPG 126 (151)
T ss_pred eeeecccccEEEEEeCeEEEEECC--EEEEEcCCCEEEECCCCEEEEECCC
Confidence 577888899999999999999998 4799999999999999999998654
No 28
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.46 E-value=2e-06 Score=50.88 Aligned_cols=57 Identities=26% Similarity=0.529 Sum_probs=53.3
Q ss_pred CCceEEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeE
Q 037642 4 SPGKFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60 (74)
Q Consensus 4 ~pg~~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~ 60 (74)
.||.|.+...+.|.+.|+.|.+++.+++..+.+.+.||+.|-+|.+..+..++.+..
T Consensus 31 ~~geytFgTa~~E~Mtvv~Gal~v~lpgs~dWq~~~~Ge~F~VpgnS~F~lqVaeat 87 (94)
T COG3123 31 APGEYTFGTAAPEEMTVVSGALTVLLPGSDDWQVYTAGEVFNVPGNSEFDLQVAEAT 87 (94)
T ss_pred eceeEEeccCCceEEEEEeeEEEEEcCCCcccEEecCCceEEcCCCCeEEEEEeeee
Confidence 488999999999999999999999999988899999999999999999999998874
No 29
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=98.42 E-value=2.5e-06 Score=61.37 Aligned_cols=57 Identities=21% Similarity=0.342 Sum_probs=43.7
Q ss_pred EEecCceEEEEEEecEEEEEeCC--CceEE--EECCCcEEEEcCCCeEEEEEeee-EEEEEEEe
Q 037642 9 QLKFDAEETCYLLKGKVKVYPKG--SSDWV--EFGAGDLVTIPKGLSCTWDVSVA-VDKYYKFE 67 (74)
Q Consensus 9 ~~~~~~~E~~~vleG~~~~~~~~--g~e~~--~~~~GD~v~~p~g~~~~~~~~~~-~~k~y~~~ 67 (74)
++| ...|+.|||+|++++.+.+ + +.+ .+++||+++||+|..|.+...+. .+-++++.
T Consensus 83 HwH-~~~E~~yVl~G~~~v~~~d~~g-~~~~~~L~~GD~~~fP~g~~H~~~n~~~~~~~l~vf~ 144 (367)
T TIGR03404 83 HWH-KEAEWAYVLYGSCRITAVDENG-RNYIDDVGAGDLWYFPPGIPHSLQGLDEGCEFLLVFD 144 (367)
T ss_pred ccC-CCceEEEEEeeEEEEEEEcCCC-cEEEeEECCCCEEEECCCCeEEEEECCCCeEEEEEeC
Confidence 566 4679999999999999953 3 345 49999999999999999997643 43333333
No 30
>PF12852 Cupin_6: Cupin
Probab=98.41 E-value=1.3e-06 Score=56.50 Aligned_cols=43 Identities=21% Similarity=0.395 Sum_probs=37.9
Q ss_pred ceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEE
Q 037642 14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDV 56 (74)
Q Consensus 14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~ 56 (74)
..-+++|++|+|++..+++.+++.+++||++++|+|..|+..-
T Consensus 35 ~~~fh~V~~G~~~l~~~~~~~~~~L~~GDivllp~g~~H~l~~ 77 (186)
T PF12852_consen 35 GASFHVVLRGSCWLRVPGGGEPIRLEAGDIVLLPRGTAHVLSS 77 (186)
T ss_pred ceEEEEEECCeEEEEEcCCCCeEEecCCCEEEEcCCCCeEeCC
Confidence 4789999999999998773368999999999999999999853
No 31
>PRK13502 transcriptional activator RhaR; Provisional
Probab=98.34 E-value=3.4e-06 Score=57.17 Aligned_cols=52 Identities=12% Similarity=-0.016 Sum_probs=44.4
Q ss_pred CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEE
Q 037642 13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKF 66 (74)
Q Consensus 13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~ 66 (74)
+..|++++++|.+++.+++ +.+.++|||+++||+|..|.+...+.....+++
T Consensus 37 ~~~~l~~v~~G~~~~~i~~--~~~~l~~g~l~li~~~~~H~~~~~~~~~~~~~~ 88 (282)
T PRK13502 37 EFCELVMVWRGNGLHVLNE--RPYRITRGDLFYIRAEDKHSYTSVNDLVLQNII 88 (282)
T ss_pred ceEEEEEEecCcEEEEECC--EEEeecCCcEEEECCCCcccccccCCceEEEEE
Confidence 5789999999999999999 479999999999999999999876655444444
No 32
>PRK13501 transcriptional activator RhaR; Provisional
Probab=98.29 E-value=4.5e-06 Score=57.04 Aligned_cols=45 Identities=11% Similarity=0.062 Sum_probs=41.2
Q ss_pred CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee
Q 037642 13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA 59 (74)
Q Consensus 13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~ 59 (74)
+..|+.||++|.+++.+++ ..+.+++||+++||+|..|.++..++
T Consensus 37 ~~~ei~~i~~G~~~~~i~~--~~~~l~~g~~~~I~p~~~H~~~~~~~ 81 (290)
T PRK13501 37 QFCEIVIVWRGNGLHVLND--HPYRITCGDVFYIQAADHHSYESVHD 81 (290)
T ss_pred cceeEEEEecCceEEEECC--eeeeecCCeEEEEcCCCcccccccCC
Confidence 6899999999999999999 47999999999999999999986554
No 33
>PRK13500 transcriptional activator RhaR; Provisional
Probab=98.23 E-value=7.8e-06 Score=56.83 Aligned_cols=54 Identities=13% Similarity=-0.015 Sum_probs=45.3
Q ss_pred cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEe
Q 037642 12 FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE 67 (74)
Q Consensus 12 ~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~ 67 (74)
.+..|++||++|.+.+.+++. .+.+.+||+++||+|..|.+...+......++.
T Consensus 66 H~~~el~~v~~G~g~~~v~~~--~~~l~~Gdl~~I~~~~~H~~~~~~~~~~~~i~~ 119 (312)
T PRK13500 66 HDFCELVIVWRGNGLHVLNDR--PYRITRGDLFYIHADDKHSYASVNDLVLQNIIY 119 (312)
T ss_pred cceEEEEEEEcCeEEEEECCE--EEeecCCeEEEECCCCeecccccCCceEEEEEE
Confidence 357899999999999999994 799999999999999999998766654443433
No 34
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=98.22 E-value=1.2e-05 Score=54.26 Aligned_cols=67 Identities=19% Similarity=0.325 Sum_probs=47.5
Q ss_pred CCce---EEEec--CceEEEEEEecEEEEEeCCCc---eEEEECCCcEEEEcCCCeEEEEEee--eEEEEEEEecCC
Q 037642 4 SPGK---FQLKF--DAEETCYLLKGKVKVYPKGSS---DWVEFGAGDLVTIPKGLSCTWDVSV--AVDKYYKFESTS 70 (74)
Q Consensus 4 ~pg~---~~~~~--~~~E~~~vleG~~~~~~~~g~---e~~~~~~GD~v~~p~g~~~~~~~~~--~~~k~y~~~~~~ 70 (74)
+||. .++|- ++.|++|+|+|++.+.+...+ .++.+++||++++|++.-|.-.-.+ ++..+.++.+..
T Consensus 88 t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~ 164 (209)
T COG2140 88 TPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADA 164 (209)
T ss_pred cCCcccccccCCCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCC
Confidence 4663 24554 445599999999999886553 4678999999999999999877554 454444444443
No 35
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=98.21 E-value=1.5e-05 Score=51.67 Aligned_cols=47 Identities=21% Similarity=0.461 Sum_probs=34.8
Q ss_pred cCceEEEEEEecEEEEEeCCCc-eE--EEECCCcEEEEcCCCeEEEEEee
Q 037642 12 FDAEETCYLLKGKVKVYPKGSS-DW--VEFGAGDLVTIPKGLSCTWDVSV 58 (74)
Q Consensus 12 ~~~~E~~~vleG~~~~~~~~g~-e~--~~~~~GD~v~~p~g~~~~~~~~~ 58 (74)
.+.+|+-||++|++.+.+..+. .. +.+++||++.+|+|..|.+...+
T Consensus 90 H~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~ 139 (157)
T PF03079_consen 90 HEDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGE 139 (157)
T ss_dssp ESS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEEST
T ss_pred cChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCC
Confidence 4579999999999998874432 22 57999999999999999999877
No 36
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=98.15 E-value=2.1e-05 Score=57.77 Aligned_cols=60 Identities=18% Similarity=0.295 Sum_probs=46.8
Q ss_pred EEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecCC
Q 037642 8 FQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESTS 70 (74)
Q Consensus 8 ~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~~ 70 (74)
+-++.+.||++++-+|++.|..+=| .+.++|||+++||+|.+.+++..++. +.|++....
T Consensus 140 ~f~NaDGD~Li~~q~G~l~l~Te~G--~L~v~pGd~~VIPRG~~~rv~l~~p~-rgyi~E~~~ 199 (424)
T PF04209_consen 140 AFRNADGDELIFPQQGSLRLETEFG--RLDVRPGDYVVIPRGTRFRVELPGPA-RGYIIENFG 199 (424)
T ss_dssp EEEESSEEEEEEEEES-EEEEETTE--EEEE-TTEEEEE-TT--EEEE-SSSE-EEEEEEEES
T ss_pred ceEcCCCCEEEEEEECCEEEEecCe--eEEEcCCeEEEECCeeEEEEEeCCCc-eEEEEEcCC
Confidence 3447789999999999999999998 59999999999999999999999775 788887543
No 37
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=98.12 E-value=2.1e-05 Score=53.26 Aligned_cols=41 Identities=29% Similarity=0.267 Sum_probs=37.7
Q ss_pred CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEE
Q 037642 13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWD 55 (74)
Q Consensus 13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~ 55 (74)
+..|+.||++|.+.+.+++ +.+.+.|||+++||+|..|...
T Consensus 42 ~~~ei~~v~~G~~~~~i~~--~~~~l~~g~l~~i~p~~~H~~~ 82 (278)
T PRK10296 42 DYYEFTLVLTGRYYQEING--KRVLLERGDFVFIPLGSHHQSF 82 (278)
T ss_pred ccEEEEEEEeceEEEEECC--EEEEECCCcEEEeCCCCcccee
Confidence 6789999999999999999 4799999999999999999664
No 38
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.09 E-value=8.9e-06 Score=56.49 Aligned_cols=48 Identities=10% Similarity=0.048 Sum_probs=42.4
Q ss_pred CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEE
Q 037642 13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDK 62 (74)
Q Consensus 13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k 62 (74)
++.|++|+++|.+.+.+++ +.+.+.|||+++|++|..|.+...+..+.
T Consensus 45 ~e~Ei~yv~~G~~~~~i~g--~~~~l~~Gd~ili~s~~~H~~~~~~~~~~ 92 (302)
T PRK10371 45 GQVEVNVPFDGDVEYLINN--EKVQINQGHITLFWACTPHQLTDPGNCRS 92 (302)
T ss_pred ccEEEEEecCCcEEEEECC--EEEEEcCCcEEEEecCCcccccccCCCce
Confidence 4789999999999999999 47999999999999999999877666543
No 39
>PRK13503 transcriptional activator RhaS; Provisional
Probab=98.02 E-value=1e-05 Score=54.46 Aligned_cols=47 Identities=11% Similarity=0.065 Sum_probs=42.0
Q ss_pred cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeE
Q 037642 12 FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60 (74)
Q Consensus 12 ~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~ 60 (74)
.+..|+.+|++|.+++.+++. .+.+++||+++||+|..+.+...+..
T Consensus 33 H~~~ei~~v~~G~~~~~i~~~--~~~l~~g~~~~i~~~~~h~~~~~~~~ 79 (278)
T PRK13503 33 HDFHEIVIVEHGTGIHVFNGQ--PYTLSGGTVCFVRDHDRHLYEHTDNL 79 (278)
T ss_pred cCceeEEEEecCceeeEecCC--cccccCCcEEEECCCccchhhhccCc
Confidence 468999999999999999995 69999999999999999998776553
No 40
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=98.01 E-value=2.5e-05 Score=52.87 Aligned_cols=45 Identities=11% Similarity=0.061 Sum_probs=40.6
Q ss_pred ceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeE
Q 037642 14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60 (74)
Q Consensus 14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~ 60 (74)
..|++++++|.+.+.+++ ..+.+++||++++|+|..+.+......
T Consensus 44 ~~~l~~~~~G~~~~~~~~--~~~~l~~g~~~ii~~~~~H~~~~~~~~ 88 (287)
T TIGR02297 44 YYQLHYLTEGSIALQLDE--HEYSEYAPCFFLTPPSVPHGFVTDLDA 88 (287)
T ss_pred ceeEEEEeeCceEEEECC--EEEEecCCeEEEeCCCCccccccCCCc
Confidence 589999999999999998 479999999999999999999876654
No 41
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.98 E-value=7.1e-05 Score=49.35 Aligned_cols=57 Identities=16% Similarity=0.304 Sum_probs=43.9
Q ss_pred cCceEEEEEEecEEEEEeCCCc---eEEEECCCcEEEEcCCCeEEEEEeee--EEEEEEEec
Q 037642 12 FDAEETCYLLKGKVKVYPKGSS---DWVEFGAGDLVTIPKGLSCTWDVSVA--VDKYYKFES 68 (74)
Q Consensus 12 ~~~~E~~~vleG~~~~~~~~g~---e~~~~~~GD~v~~p~g~~~~~~~~~~--~~k~y~~~~ 68 (74)
...+|+-|+|+|.+.+.+.+.. -.+.+.+||++.+|+|..|.++..+. ++++=.+..
T Consensus 93 H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~~ 154 (181)
T COG1791 93 HTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFTE 154 (181)
T ss_pred cCCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEeeC
Confidence 4579999999999998875542 24779999999999999999998874 444433433
No 42
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=97.96 E-value=0.00014 Score=42.45 Aligned_cols=51 Identities=25% Similarity=0.446 Sum_probs=37.7
Q ss_pred CCce-EEEe-cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeE
Q 037642 4 SPGK-FQLK-FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60 (74)
Q Consensus 4 ~pg~-~~~~-~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~ 60 (74)
+||. +..| ....|.+|||+|++. .+++ .+.+||.+..|+|..++..+.+.+
T Consensus 32 ~pG~~~p~H~H~g~ee~~VLeG~~~--d~~~----~~~~G~~~~~p~g~~h~~~s~~gc 84 (91)
T PF12973_consen 32 EPGASLPRHRHPGGEEILVLEGELS--DGDG----RYGAGDWLRLPPGSSHTPRSDEGC 84 (91)
T ss_dssp -TTEEEEEEEESS-EEEEEEECEEE--ETTC----EEETTEEEEE-TTEEEEEEESSCE
T ss_pred CCCCCcCccCCCCcEEEEEEEEEEE--ECCc----cCCCCeEEEeCCCCccccCcCCCE
Confidence 3555 4454 467888899999986 3442 579999999999999999988775
No 43
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=97.96 E-value=6.6e-05 Score=55.36 Aligned_cols=62 Identities=15% Similarity=0.288 Sum_probs=53.6
Q ss_pred EEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecCCC
Q 037642 8 FQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESTSS 71 (74)
Q Consensus 8 ~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~~~ 71 (74)
+-++.|.|+++++.+|.+.|..+=| .+.++|||+++||+|.+.+.+..+.-.+.|++...++
T Consensus 148 ~f~NaDGD~Livpq~G~l~i~TEfG--~L~v~pgei~VIPRG~~frv~l~~gp~rgyi~E~~g~ 209 (438)
T PRK05341 148 YFYNADGELLIVPQQGRLRLATELG--VLDVEPGEIAVIPRGVKFRVELPDGPARGYVCENYGA 209 (438)
T ss_pred eeecCCCCEEEEEEeCCEEEEEecc--ceEecCCCEEEEcCccEEEEecCCCCeeEEEEEecCC
Confidence 3456788999999999999999998 5999999999999999999998665558899876653
No 44
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=97.91 E-value=0.00013 Score=45.89 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=50.7
Q ss_pred CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecC
Q 037642 13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFEST 69 (74)
Q Consensus 13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~ 69 (74)
+.-|-+||++|+++++.-+.++.+.++||.++.+-+...|.....+.++.+=+|+-|
T Consensus 54 nHlEAvyci~G~Gev~~~~~G~~~~i~pGt~YaLd~hD~H~lra~~dm~~vCVFnPp 110 (126)
T PF06339_consen 54 NHLEAVYCIEGEGEVEDLDTGEVHPIKPGTMYALDKHDRHYLRAKTDMRLVCVFNPP 110 (126)
T ss_pred CceEEEEEEeceEEEEEccCCcEEEcCCCeEEecCCCccEEEEecCCEEEEEEcCCC
Confidence 468999999999999986333789999999999999999999999999998888765
No 45
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=97.87 E-value=0.00013 Score=53.73 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=52.4
Q ss_pred EEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecCC
Q 037642 8 FQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESTS 70 (74)
Q Consensus 8 ~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~~ 70 (74)
+-++.|.|+++++-+|.+.|..+=| .+.++|||+++||+|.+.+.+..++. +.|++..-.
T Consensus 142 ~f~NaDGD~Livpq~G~l~i~TEfG--~L~v~pgei~VIPRG~~frv~l~gp~-rgyi~E~~g 201 (429)
T TIGR01015 142 AFYNADGDFLIVPQQGALLITTEFG--RLLVEPNEICVIPRGVRFRVTVLEPA-RGYICEVYG 201 (429)
T ss_pred eeeccCCCEEEEEEeCcEEEEEecc--ceEecCCCEEEecCccEEEEeeCCCc-eEEEEeccC
Confidence 3456788999999999999999998 59999999999999999999998775 688877654
No 46
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=97.86 E-value=0.00025 Score=41.72 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=35.1
Q ss_pred cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEe
Q 037642 12 FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVS 57 (74)
Q Consensus 12 ~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~ 57 (74)
.+..-+++|++|.+.+++++ .+..+.+||.+.+|+|-.-..+-.
T Consensus 31 ~~~~~vF~V~~G~v~Vti~~--~~f~v~~G~~F~VP~gN~Y~i~N~ 74 (85)
T PF11699_consen 31 RDNTMVFYVIKGKVEVTIHE--TSFVVTKGGSFQVPRGNYYSIKNI 74 (85)
T ss_dssp -SEEEEEEEEESEEEEEETT--EEEEEETT-EEEE-TT-EEEEEE-
T ss_pred CCcEEEEEEEeCEEEEEEcC--cEEEEeCCCEEEECCCCEEEEEEC
Confidence 45677899999999999999 479999999999999998887753
No 47
>PLN02658 homogentisate 1,2-dioxygenase
Probab=97.84 E-value=0.00015 Score=53.47 Aligned_cols=61 Identities=16% Similarity=0.233 Sum_probs=52.7
Q ss_pred EEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecCC
Q 037642 8 FQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESTS 70 (74)
Q Consensus 8 ~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~~ 70 (74)
+-++.|.|+++++-+|.+.|..+=| .+.++|||+++||+|.+.+.+..+.-.+.|++..-.
T Consensus 141 ~f~NaDGD~Livpq~G~l~i~TEfG--~L~v~pgei~VIPRG~~frv~l~~gp~rgyv~E~~g 201 (435)
T PLN02658 141 AFCNADGDFLIVPQQGRLWIKTELG--KLQVSPGEIVVIPRGFRFAVDLPDGPSRGYVLEIFG 201 (435)
T ss_pred eeecCCCCEEEEEEeCCEEEEEecc--ceEecCCCEEEecCccEEEEecCCCCeeEEEEeecC
Confidence 3456788999999999999999998 599999999999999999999866555788887654
No 48
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=97.80 E-value=0.00011 Score=47.38 Aligned_cols=48 Identities=19% Similarity=0.325 Sum_probs=32.5
Q ss_pred EEecC-ceEEEEEEecEEEEEe--CCCceEEEECCCcEEEEcCCCeEEEEE
Q 037642 9 QLKFD-AEETCYLLKGKVKVYP--KGSSDWVEFGAGDLVTIPKGLSCTWDV 56 (74)
Q Consensus 9 ~~~~~-~~E~~~vleG~~~~~~--~~g~e~~~~~~GD~v~~p~g~~~~~~~ 56 (74)
.||.+ .+|++|-++|.+.+.+ ++..+.+.+++||++++|++.+|.=.=
T Consensus 47 DyHine~eE~FyQ~kG~m~Lkv~e~g~~kdi~I~EGe~fLLP~~vpHsP~R 97 (151)
T PF06052_consen 47 DYHINETEEFFYQLKGDMCLKVVEDGKFKDIPIREGEMFLLPANVPHSPQR 97 (151)
T ss_dssp SEEE-SS-EEEEEEES-EEEEEEETTEEEEEEE-TTEEEEE-TT--EEEEE
T ss_pred ccccCCcceEEEEEeCcEEEEEEeCCceEEEEeCCCcEEecCCCCCCCCcC
Confidence 46665 5899999999999876 333356889999999999999997653
No 49
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.80 E-value=0.0001 Score=52.80 Aligned_cols=46 Identities=13% Similarity=0.219 Sum_probs=40.9
Q ss_pred CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeE
Q 037642 13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60 (74)
Q Consensus 13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~ 60 (74)
....+++|++|++..++++ +.++.++||+|.+|....+++...++.
T Consensus 269 T~s~Vf~VieG~G~s~ig~--~~~~W~~gD~f~vPsW~~~~h~a~~da 314 (335)
T TIGR02272 269 TDATVFCVVEGRGQVRIGD--AVFRFSPKDVFVVPSWHPVRFEASDDA 314 (335)
T ss_pred cccEEEEEEeCeEEEEECC--EEEEecCCCEEEECCCCcEecccCCCe
Confidence 3589999999999999988 479999999999999999888877664
No 50
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=97.76 E-value=0.00014 Score=45.74 Aligned_cols=47 Identities=26% Similarity=0.473 Sum_probs=37.5
Q ss_pred EEecCceEEEEEEecEEEEEeCCC-ceEEEECCCcEEEEcCCCeEEEE
Q 037642 9 QLKFDAEETCYLLKGKVKVYPKGS-SDWVEFGAGDLVTIPKGLSCTWD 55 (74)
Q Consensus 9 ~~~~~~~E~~~vleG~~~~~~~~g-~e~~~~~~GD~v~~p~g~~~~~~ 55 (74)
+.|-..+-.+|||+|++...-.+- ++...++|||+++||+|.++.=-
T Consensus 62 H~H~~hEtaIYvlsG~ah~w~G~rLE~ha~~~pGDf~YiPpgVPHqp~ 109 (142)
T COG4101 62 HLHEEHETAIYVLSGEAHTWYGNRLEEHAEVGPGDFFYIPPGVPHQPA 109 (142)
T ss_pred cccccccEEEEEEeceeeeeeccceeeeEEecCCCeEEcCCCCCCccc
Confidence 455667889999999999886553 34578999999999999988643
No 51
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=97.76 E-value=0.0001 Score=47.39 Aligned_cols=45 Identities=27% Similarity=0.450 Sum_probs=37.0
Q ss_pred EEecCceEEEEEEecEEEEEeCCC-ceEEEECCCcEEEEcCCCeEE
Q 037642 9 QLKFDAEETCYLLKGKVKVYPKGS-SDWVEFGAGDLVTIPKGLSCT 53 (74)
Q Consensus 9 ~~~~~~~E~~~vleG~~~~~~~~g-~e~~~~~~GD~v~~p~g~~~~ 53 (74)
+||...-|+.-||+|++.+.+.+. ...+.+++||+++||+|.-|.
T Consensus 59 HYHs~aHEVl~vlrgqA~l~iGG~~G~el~v~~GDvlliPAGvGH~ 104 (163)
T COG4297 59 HYHSGAHEVLGVLRGQAGLQIGGADGQELEVGEGDVLLIPAGVGHC 104 (163)
T ss_pred cccCCcceEEEEecceeEEEecCCCCceeeecCCCEEEEecCcccc
Confidence 355678999999999999998442 146999999999999998763
No 52
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=97.75 E-value=0.00023 Score=47.15 Aligned_cols=47 Identities=23% Similarity=0.194 Sum_probs=32.0
Q ss_pred cCceEEEEEEecEEEEEeCCCc-------eEEEECCCcEEEEcCCCeEEEEEee
Q 037642 12 FDAEETCYLLKGKVKVYPKGSS-------DWVEFGAGDLVTIPKGLSCTWDVSV 58 (74)
Q Consensus 12 ~~~~E~~~vleG~~~~~~~~g~-------e~~~~~~GD~v~~p~g~~~~~~~~~ 58 (74)
.+..|++++|+|++.+.+.+.. ....++|||.++||+++-|.---.+
T Consensus 81 ~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~yaH~tIN~g 134 (182)
T PF06560_consen 81 LSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYAHRTINTG 134 (182)
T ss_dssp TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-EEEEEE-S
T ss_pred CCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCceEEEEECC
Confidence 4589999999999998863321 2367999999999999999776444
No 53
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.74 E-value=7.9e-05 Score=48.93 Aligned_cols=46 Identities=24% Similarity=0.535 Sum_probs=38.1
Q ss_pred CceEEEEEEecEEEEEeCCCc-eE--EEECCCcEEEEcCCCeEEEEEee
Q 037642 13 DAEETCYLLKGKVKVYPKGSS-DW--VEFGAGDLVTIPKGLSCTWDVSV 58 (74)
Q Consensus 13 ~~~E~~~vleG~~~~~~~~g~-e~--~~~~~GD~v~~p~g~~~~~~~~~ 58 (74)
..+|+-|||+|.+.+-+.+.+ .. +.++.||+++||+|.-|++.+..
T Consensus 92 ~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~ 140 (179)
T KOG2107|consen 92 EDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTP 140 (179)
T ss_pred chhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCc
Confidence 468999999999999876542 23 45899999999999999998765
No 54
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=97.59 E-value=0.00053 Score=47.10 Aligned_cols=40 Identities=23% Similarity=0.397 Sum_probs=37.2
Q ss_pred ceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEE
Q 037642 14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWD 55 (74)
Q Consensus 14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~ 55 (74)
.+-+.||++|++++..++ ++..+++|+.+++|+|...+.+
T Consensus 83 ae~~lfVv~Ge~tv~~~G--~th~l~eggyaylPpgs~~~~~ 122 (264)
T COG3257 83 AETFLFVVSGEITVKAEG--KTHALREGGYAYLPPGSGWTLR 122 (264)
T ss_pred ceEEEEEEeeeEEEEEcC--eEEEeccCCeEEeCCCCcceEe
Confidence 577899999999999999 5899999999999999998888
No 55
>PLN00212 glutelin; Provisional
Probab=97.56 E-value=0.00095 Score=50.01 Aligned_cols=51 Identities=16% Similarity=0.271 Sum_probs=40.7
Q ss_pred EEecCceEEEEEEecEEEEEeCC--CceEE--EECCCcEEEEcCCCeEEEEEeee
Q 037642 9 QLKFDAEETCYLLKGKVKVYPKG--SSDWV--EFGAGDLVTIPKGLSCTWDVSVA 59 (74)
Q Consensus 9 ~~~~~~~E~~~vleG~~~~~~~~--g~e~~--~~~~GD~v~~p~g~~~~~~~~~~ 59 (74)
+||..+.+++||++|++.+.+-+ |...+ .|++||+++||+|..+.-.....
T Consensus 364 Hwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~~v~~~A~~e 418 (493)
T PLN00212 364 FWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHYAVLKKAERE 418 (493)
T ss_pred eecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCCeEEEeecCC
Confidence 67788999999999999998744 22233 69999999999999987655543
No 56
>PLN00212 glutelin; Provisional
Probab=97.54 E-value=0.0008 Score=50.41 Aligned_cols=67 Identities=16% Similarity=0.283 Sum_probs=49.0
Q ss_pred CCceE--EEecCceEEEEEEecEEEEEeCC--Cce--------------------------EEEECCCcEEEEcCCCeEE
Q 037642 4 SPGKF--QLKFDAEETCYLLKGKVKVYPKG--SSD--------------------------WVEFGAGDLVTIPKGLSCT 53 (74)
Q Consensus 4 ~pg~~--~~~~~~~E~~~vleG~~~~~~~~--g~e--------------------------~~~~~~GD~v~~p~g~~~~ 53 (74)
+|+.. +.+.+.++++||++|++.+.+-. .-+ ...+++||++.||+|..+.
T Consensus 88 ~p~gL~lP~y~na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~~~~~~~d~hqkv~~lr~GDViaiPaG~~hw 167 (493)
T PLN00212 88 EPQGLLLPRYSNTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQSQSQKFRDEHQKIHQFRQGDVVALPAGVAHW 167 (493)
T ss_pred cCCcccCccccCCCeEEEEEeCeEEEEEEeCCCcchhhhhcccccccccccccccccccccceEeccCCEEEECCCCeEE
Confidence 35554 22347899999999999988641 111 1589999999999999999
Q ss_pred EEEeee--EEEEEEEecCC
Q 037642 54 WDVSVA--VDKYYKFESTS 70 (74)
Q Consensus 54 ~~~~~~--~~k~y~~~~~~ 70 (74)
+--.+. +..+++++.+.
T Consensus 168 ~yN~Gd~~~v~v~~~d~~n 186 (493)
T PLN00212 168 FYNDGDAPVVALYVYDINN 186 (493)
T ss_pred EEeCCCCcEEEEEEEeccc
Confidence 988764 55677776544
No 57
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.45 E-value=0.00078 Score=49.01 Aligned_cols=60 Identities=18% Similarity=0.302 Sum_probs=52.1
Q ss_pred eEEEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEec
Q 037642 7 KFQLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFES 68 (74)
Q Consensus 7 ~~~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~ 68 (74)
.+-++.|.++++++-.|+..+..+=| .+.++|||+.+||.|.+.+.+..++-...|++.-
T Consensus 139 ~~f~NADge~Livpq~G~l~l~te~G--~l~v~pgeiavIPRG~~frve~~~~~~rgy~~En 198 (427)
T COG3508 139 RFFRNADGELLIVPQQGELRLKTELG--VLEVEPGEIAVIPRGTTFRVELKDGEARGYGCEN 198 (427)
T ss_pred hhhhcCCCCEEEEeecceEEEEEeec--eEEecCCcEEEeeCCceEEEEecCCceEEEEEee
Confidence 34456788999999999999999998 5999999999999999999999887767777653
No 58
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=97.29 E-value=0.0056 Score=39.89 Aligned_cols=57 Identities=16% Similarity=0.140 Sum_probs=32.1
Q ss_pred cCceEEEEEEecEEEEEeCCC-------ceEEEECCCcEEEEcCCCeEEE-EEe--eeEEEEEEEec
Q 037642 12 FDAEETCYLLKGKVKVYPKGS-------SDWVEFGAGDLVTIPKGLSCTW-DVS--VAVDKYYKFES 68 (74)
Q Consensus 12 ~~~~E~~~vleG~~~~~~~~g-------~e~~~~~~GD~v~~p~g~~~~~-~~~--~~~~k~y~~~~ 68 (74)
...+|+++||+|++++.+... -+++.+.|++++.||.+..++. .+. +.++.+-++++
T Consensus 62 HsCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlqvlViiSr 128 (167)
T PF02041_consen 62 HSCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQVLVIISR 128 (167)
T ss_dssp ESS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EEEEEEEES
T ss_pred ccccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCCcceEEEEEecC
Confidence 357999999999999998643 1458899999999999999874 444 34433333443
No 59
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=97.29 E-value=0.0012 Score=44.92 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=37.3
Q ss_pred CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEe
Q 037642 13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVS 57 (74)
Q Consensus 13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~ 57 (74)
...++.++++|.+.+..++. .+.+++||+++||+|..+.+...
T Consensus 48 ~~~~i~~~~~G~~~~~~~~~--~~~~~~g~~i~i~p~~~h~~~~~ 90 (290)
T PRK10572 48 KGYILNLTIRGQGVIFNGGR--AFVCRPGDLLLFPPGEIHHYGRH 90 (290)
T ss_pred cceEEEEEEeccEEEecCCe--eEecCCCCEEEECCCCceeeccC
Confidence 35788999999999998884 69999999999999999986543
No 60
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=97.26 E-value=0.0022 Score=39.67 Aligned_cols=50 Identities=20% Similarity=0.256 Sum_probs=44.0
Q ss_pred ceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEE
Q 037642 14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYK 65 (74)
Q Consensus 14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~ 65 (74)
..-+++.++|.+.++.++ ....+.|||+++++++.+.+....+..+++.+
T Consensus 55 ~~~l~~~~~G~~~~~~~g--~~~~~~pg~~~l~d~~~~~~~~~~~~~~~~~l 104 (172)
T PF14525_consen 55 HYLLVLPLSGSARIEQGG--REVELAPGDVVLLDPGQPYRLEFSAGCRQLSL 104 (172)
T ss_pred EEEEEEEccCCEEEEECC--EEEEEcCCeEEEEcCCCCEEEEECCCccEEEE
Confidence 456778899999999998 47999999999999999999999988877665
No 61
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=97.20 E-value=0.00083 Score=45.17 Aligned_cols=51 Identities=12% Similarity=0.093 Sum_probs=41.1
Q ss_pred CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee--EEEEEEEecC
Q 037642 13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA--VDKYYKFEST 69 (74)
Q Consensus 13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~--~~k~y~~~~~ 69 (74)
...|+.+||+|++ ..++ ..+.+||.+.+|+|..|+....+. +..+-+.+++
T Consensus 146 ~G~E~tlVLeG~f--~de~----g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v~dap 198 (215)
T TIGR02451 146 KGFELTLVLHGAF--SDET----GVYGVGDFEEADGSVQHQPRTVSGGDCLCLAVLDAP 198 (215)
T ss_pred CCcEEEEEEEEEE--EcCC----CccCCCeEEECCCCCCcCcccCCCCCeEEEEEecCC
Confidence 5688999999996 3333 478999999999999999999965 7766666654
No 62
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=97.18 E-value=0.0067 Score=37.91 Aligned_cols=52 Identities=13% Similarity=0.092 Sum_probs=33.4
Q ss_pred EEEecCceEEEEEEecEEEEEeCCCc--eEEEECCC-cEEEEcCCCeEEEEEeee
Q 037642 8 FQLKFDAEETCYLLKGKVKVYPKGSS--DWVEFGAG-DLVTIPKGLSCTWDVSVA 59 (74)
Q Consensus 8 ~~~~~~~~E~~~vleG~~~~~~~~g~--e~~~~~~G-D~v~~p~g~~~~~~~~~~ 59 (74)
|+.|....+++++++|++.+.++++. +.+.|..- ..+.||+|..+.+.-.++
T Consensus 48 ~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~~~~~L~~~~~~L~Ippg~w~~~~~~s~ 102 (131)
T PF05523_consen 48 WHAHKKTTQWFIVLSGSFKVVLDDGREEEEFILDEPNKGLYIPPGVWHGIKNFSE 102 (131)
T ss_dssp EEEESS--EEEEEEES-EEEEEE-SS-EEEEEE--TTEEEEE-TT-EEEEE---T
T ss_pred ccccccccEEEEEEeCEEEEEEecCCCcEEEEECCCCeEEEECCchhhHhhccCC
Confidence 67888899999999999999987763 34556655 488999999999964443
No 63
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=97.17 E-value=0.0031 Score=43.05 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=40.4
Q ss_pred ceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEE
Q 037642 14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKY 63 (74)
Q Consensus 14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~ 63 (74)
...+.++++|.+.+..++. .+.+.|||++++|++.++.+...+....+
T Consensus 71 ~~~l~~~~~G~~~~~~~g~--~~~l~~G~~~l~~~~~p~~~~~~~~~~~~ 118 (302)
T PRK09685 71 HFFTVFQLSGHAIIEQDDR--QVQLAAGDITLIDASRPCSIYPQGLSEQI 118 (302)
T ss_pred cEEEEEEecceEEEEECCe--EEEEcCCCEEEEECCCCcEeecCCCceeE
Confidence 3456778999999999994 69999999999999999998877766544
No 64
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.08 E-value=0.0016 Score=46.79 Aligned_cols=46 Identities=11% Similarity=0.141 Sum_probs=37.5
Q ss_pred CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee
Q 037642 13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA 59 (74)
Q Consensus 13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~ 59 (74)
....+.+|++|++.++.-+| +.+.+++||+|+.|.+..|.+...+.
T Consensus 100 t~sAl~~vveG~G~~t~V~g-~~~~~~~gD~~~tP~w~wH~H~n~~d 145 (335)
T TIGR02272 100 TQSALRFIVEGKGAFTAVDG-ERTTMHPGDFIITPSWTWHDHGNPGD 145 (335)
T ss_pred ccceEEEEEEcCceEEEECC-EEEeeeCCCEEEeCCCeeEecccCCC
Confidence 46789999999996544344 68999999999999999999876544
No 65
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=97.04 E-value=0.0056 Score=42.78 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=33.9
Q ss_pred CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCC-eEEEE
Q 037642 13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGL-SCTWD 55 (74)
Q Consensus 13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~-~~~~~ 55 (74)
+...++.|++|++++..++ +.+.+++|++++||++. ..+.+
T Consensus 252 ~~~~il~v~~G~~~i~~~~--~~~~l~~G~~~~ipa~~~~~~i~ 293 (302)
T TIGR00218 252 QSALILSVLEGSGRIKSGG--KTLPLKKGESFFIPAHLGPFTIE 293 (302)
T ss_pred CCcEEEEEEcceEEEEECC--EEEEEecccEEEEccCCccEEEE
Confidence 3577899999999998755 46999999999999987 45554
No 66
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=96.98 E-value=0.0026 Score=46.40 Aligned_cols=53 Identities=19% Similarity=0.171 Sum_probs=45.8
Q ss_pred CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEE
Q 037642 13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKF 66 (74)
Q Consensus 13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~ 66 (74)
+..-+..|++|++++..+.+ ..+.+++||+++||++....+...++..+.|..
T Consensus 352 ~~~SIllv~~G~g~l~~~t~-~~~~v~rG~V~fI~a~~~i~~~~~sd~~~~yrA 404 (411)
T KOG2757|consen 352 DGPSILLVLKGSGILKTDTD-SKILVNRGDVLFIPANHPIHLSSSSDPFLGYRA 404 (411)
T ss_pred CCceEEEEEecceEEecCCC-CceeeccCcEEEEcCCCCceeeccCcceeeeec
Confidence 46788999999999999944 369999999999999999999988887677763
No 67
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=96.85 E-value=0.0095 Score=33.06 Aligned_cols=53 Identities=23% Similarity=0.311 Sum_probs=42.0
Q ss_pred CCceE-EEecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEE
Q 037642 4 SPGKF-QLKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDV 56 (74)
Q Consensus 4 ~pg~~-~~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~ 56 (74)
.||.. .+........-|.+|.+.++.++..+.+-|+|||.+.+++|.....+.
T Consensus 5 ~~g~~~~lr~~~~~~l~v~~G~vWlT~~g~~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 5 APGETLSLRAAAGQRLRVESGRVWLTREGDPDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred CCCceEEeEcCCCcEEEEccccEEEECCCCCCCEEECCCCEEEeCCCCEEEEEe
Confidence 45553 455556666999999999999876567999999999999998876554
No 68
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=96.81 E-value=0.012 Score=42.97 Aligned_cols=40 Identities=13% Similarity=0.231 Sum_probs=32.9
Q ss_pred EecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCe
Q 037642 10 LKFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLS 51 (74)
Q Consensus 10 ~~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~ 51 (74)
...+...+++|++|++++..++ +...+++|+.+++|++..
T Consensus 335 ~~~~~~~Illv~~G~~~i~~~~--~~~~l~~G~~~fipa~~~ 374 (389)
T PRK15131 335 LSQQSAAILFCVEGEAVLWKGE--QQLTLKPGESAFIAANES 374 (389)
T ss_pred ecCCCcEEEEEEcceEEEEeCC--eEEEECCCCEEEEeCCCc
Confidence 3334578999999999998755 468999999999999764
No 69
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=96.80 E-value=0.014 Score=41.05 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=43.5
Q ss_pred cCceEE-EEEEecEEEEEeCCCceEEEECCCcEEEEcCCCe-EEEEEeee--EEEEEEEecCC
Q 037642 12 FDAEET-CYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLS-CTWDVSVA--VDKYYKFESTS 70 (74)
Q Consensus 12 ~~~~E~-~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~-~~~~~~~~--~~k~y~~~~~~ 70 (74)
.+..|+ +..|.|.++++.++ +.+.+.+.|++++|+|.+ .++..... -.++|++.++.
T Consensus 71 l~rrE~giV~lgG~~~V~vdG--~~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~sAPA 131 (276)
T PRK00924 71 LERRELGIINIGGAGTVTVDG--ETYELGHRDALYVGKGAKEVVFASADAANPAKFYLNSAPA 131 (276)
T ss_pred cCCcEEEEEEccceEEEEECC--EEEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEEcccc
Confidence 344554 56789999999988 578999999999999977 66643321 25999998875
No 70
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.49 E-value=0.013 Score=42.00 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=38.3
Q ss_pred CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEe
Q 037642 13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVS 57 (74)
Q Consensus 13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~ 57 (74)
...-++.|.+|++++.+++ +.+...+||+|++|....+.....
T Consensus 280 t~s~iy~V~eGsg~~~Ig~--~rf~~~~~D~fvVPsW~~~~~~~g 322 (351)
T COG3435 280 TDSTIYHVVEGSGYTIIGG--ERFDWSAGDIFVVPSWAWHEHVNG 322 (351)
T ss_pred cCCEEEEEEecceeEEECC--EEeeccCCCEEEccCcceeecccC
Confidence 3567889999999999999 589999999999999999888773
No 71
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=96.39 E-value=0.023 Score=39.38 Aligned_cols=58 Identities=21% Similarity=0.353 Sum_probs=42.0
Q ss_pred cCceE-EEEEEecEEEEEeCCCceEEEECCC--------cEEEEcCCCeEEEEEeeeEEEEEEEecCCC
Q 037642 12 FDAEE-TCYLLKGKVKVYPKGSSDWVEFGAG--------DLVTIPKGLSCTWDVSVAVDKYYKFESTSS 71 (74)
Q Consensus 12 ~~~~E-~~~vleG~~~~~~~~g~e~~~~~~G--------D~v~~p~g~~~~~~~~~~~~k~y~~~~~~~ 71 (74)
.+..| .+++|+|.++++.++. +...+..- |++++|+|.+.+...... .++|++.++..
T Consensus 44 ~~~~E~~vv~l~G~~~v~~~g~-~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~-ae~~~~sapa~ 110 (261)
T PF04962_consen 44 LERRELGVVNLGGKATVTVDGE-EFYELGGRESVFDGPPDALYVPRGTKVVIFASTD-AEFAVCSAPAH 110 (261)
T ss_dssp CCSEEEEEEEESSSEEEEETTE-EEEEE-TTSSGGGS--EEEEE-TT--EEEEESST-EEEEEEEEE-S
T ss_pred CCCcEEEEEEeCCEEEEEeCCc-eEEEecccccccCCCCcEEEeCCCCeEEEEEcCC-CEEEEEccccC
Confidence 33344 4566899999999985 46788887 999999999999988777 58999887654
No 72
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=96.34 E-value=0.0091 Score=41.15 Aligned_cols=52 Identities=21% Similarity=0.205 Sum_probs=42.9
Q ss_pred eEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEec
Q 037642 15 EETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFES 68 (74)
Q Consensus 15 ~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~ 68 (74)
+.=.|||||.+.+++++ ..+.+++||.+.+.+-.+-..-..++-+-.|++++
T Consensus 204 EHGlyvLeGk~vYrLn~--dwv~V~aGD~mwm~A~cpQacyagG~g~frYLlyK 255 (264)
T COG3257 204 EHGLYVLEGKGVYRLNN--NWVPVEAGDYIWMGAYCPQACYAGGRGAFRYLLYK 255 (264)
T ss_pred hcceEEEecceEEeecC--ceEEeecccEEEeeccChhhhccCCCCceEEEEEe
Confidence 44569999999999999 48999999999998887777767777777777665
No 73
>PLN02288 mannose-6-phosphate isomerase
Probab=96.23 E-value=0.011 Score=43.32 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=33.6
Q ss_pred cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEE
Q 037642 12 FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCT 53 (74)
Q Consensus 12 ~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~ 53 (74)
.+...+++|++|++++...+++....+++|+++++|++....
T Consensus 352 ~~gp~Illv~~G~~~i~~~~~~~~~~l~~G~~~fv~a~~~~~ 393 (394)
T PLN02288 352 VPGPSVFLVIEGEGVLSTGSSEDGTAAKRGDVFFVPAGTEIH 393 (394)
T ss_pred CCCCEEEEEEcCEEEEecCCccceEEEeceeEEEEeCCCccc
Confidence 346789999999999987664223679999999999987654
No 74
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=96.11 E-value=0.022 Score=37.36 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=24.7
Q ss_pred eEEEECCCcEEEEcCCCeEEEEEe--e--eEEEEEEEecC
Q 037642 34 DWVEFGAGDLVTIPKGLSCTWDVS--V--AVDKYYKFEST 69 (74)
Q Consensus 34 e~~~~~~GD~v~~p~g~~~~~~~~--~--~~~k~y~~~~~ 69 (74)
-...++|||+++||+|+.|.-+.. + .+--.|-+..+
T Consensus 209 ~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w~~~~ 248 (251)
T PF13621_consen 209 YEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYWFRTP 248 (251)
T ss_dssp EEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEEEESS
T ss_pred eEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEEeccc
Confidence 347899999999999999999998 5 35445544443
No 75
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=96.08 E-value=0.051 Score=38.80 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=35.2
Q ss_pred ceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCC-CeEEEEEe
Q 037642 14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKG-LSCTWDVS 57 (74)
Q Consensus 14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g-~~~~~~~~ 57 (74)
...+.+|++|++++..++ +.+.+++|+.++||+. .+.+.+-.
T Consensus 260 ~~~il~v~eG~~~l~~~~--~~~~l~~G~s~~ipa~~~~~~i~g~ 302 (312)
T COG1482 260 SFSILLVLEGEGTLIGGG--QTLKLKKGESFFIPANDGPYTIEGE 302 (312)
T ss_pred CcEEEEEEcCeEEEecCC--EEEEEcCCcEEEEEcCCCcEEEEec
Confidence 578999999999999996 5799999999999998 55444433
No 76
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.94 E-value=0.013 Score=41.99 Aligned_cols=46 Identities=13% Similarity=0.134 Sum_probs=39.0
Q ss_pred cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee
Q 037642 12 FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV 58 (74)
Q Consensus 12 ~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~ 58 (74)
.....+-+|+||.+-++.-+| +...+++||+++.|++..|..-..+
T Consensus 110 HsqsAlRFvveG~Ga~T~VdG-er~~M~~GDfilTP~w~wHdHgn~g 155 (351)
T COG3435 110 HNQSALRFVVEGKGAYTVVDG-ERTPMEAGDFILTPAWTWHDHGNEG 155 (351)
T ss_pred ccccceEEEEeccceeEeecC-ceeeccCCCEEEccCceeccCCCCC
Confidence 457889999999998888887 6899999999999999887765543
No 77
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=95.47 E-value=0.036 Score=43.25 Aligned_cols=42 Identities=21% Similarity=0.579 Sum_probs=36.7
Q ss_pred CcCCceEEEecC--ceEEEEEEecEEEEEeCCCceEEEECCCcEE
Q 037642 2 GCSPGKFQLKFD--AEETCYLLKGKVKVYPKGSSDWVEFGAGDLV 44 (74)
Q Consensus 2 ~~~pg~~~~~~~--~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v 44 (74)
+|.||..-||.. .|.+|+|++|+.++..++. -.-.++.||.|
T Consensus 575 H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDE-VVAILGKGDVF 618 (971)
T KOG0501|consen 575 HCAPGDLLYHTGESVDALCFVVSGSLEVIQDDE-VVAILGKGDVF 618 (971)
T ss_pred cCCCcceeeecCCccceEEEEEecceEEeecCc-EEEEeecCccc
Confidence 589999888876 5999999999999999995 46779999987
No 78
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=94.77 E-value=0.29 Score=29.77 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=36.9
Q ss_pred ecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEE
Q 037642 11 KFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWD 55 (74)
Q Consensus 11 ~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~ 55 (74)
|.+.+-+-||++|.+.-.+.-|+ ...+++||+-.+-+|.-...+
T Consensus 47 H~g~eivTyv~~G~~~H~Ds~G~-~~~l~~G~vq~m~AG~Gi~H~ 90 (107)
T PF02678_consen 47 HRGFEIVTYVLEGELRHRDSLGN-RGVLRAGDVQWMTAGSGIVHS 90 (107)
T ss_dssp ECSEEEEEEEEESEEEEEETTSE-EEEEETTEEEEEE-TTTEEEE
T ss_pred CCCceEEEEEecCEEEEECCCCC-eeEeCCCeEEEEeCCCCceEE
Confidence 46778899999999999999884 689999999999999766554
No 79
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=94.74 E-value=0.52 Score=30.97 Aligned_cols=66 Identities=12% Similarity=0.139 Sum_probs=42.7
Q ss_pred CceEEEecCceEEEEEEecE-EEEEeCCCceEEEECCCcEEEEcCCCeEEEE-EeeeEEEEEEEecCC
Q 037642 5 PGKFQLKFDAEETCYLLKGK-VKVYPKGSSDWVEFGAGDLVTIPKGLSCTWD-VSVAVDKYYKFESTS 70 (74)
Q Consensus 5 pg~~~~~~~~~E~~~vleG~-~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~-~~~~~~k~y~~~~~~ 70 (74)
+|.|..--..+-+..+|+|. +.+..++..+...++|++.+.|+-+...+-. ..++++.+=++.+.+
T Consensus 45 ~g~FS~FpG~~R~l~~L~G~gl~L~~~~~~~~~~l~p~~~~~F~G~~~v~~~l~~G~~~dfNlM~r~~ 112 (184)
T PF05962_consen 45 DGPFSDFPGYDRILTLLEGNGLRLTHDGQQEHTLLQPFQPFAFDGDWPVTSELLDGPVRDFNLMTRRG 112 (184)
T ss_dssp SEEE---TT-EEEEEEEESS-EEEEETTCSE-EEE-BT--EEEETTS-EEEEESSS-EEEEEEEE-TT
T ss_pred CCCCCCCCCCcEEEEEEeCCcEEEecCCCcceeccCCCCcEEcCCCCeEEEEECCCCEEEEEEEecCC
Confidence 34444334578899999999 9999998633466999999999999998888 456677776666554
No 80
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=94.59 E-value=0.52 Score=27.97 Aligned_cols=49 Identities=22% Similarity=0.259 Sum_probs=36.6
Q ss_pred ecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEe-eeEEEE
Q 037642 11 KFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVS-VAVDKY 63 (74)
Q Consensus 11 ~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~-~~~~k~ 63 (74)
.....-+.||++|.+.+ ++. ...+.+|++++|..|...+.+.. +..+-+
T Consensus 17 ~~~~~~~iyv~~G~~~v--~~~--~~~~~~~~~~~l~~g~~i~~~a~~~~a~~l 66 (104)
T PF05726_consen 17 PPGHNAFIYVLEGSVEV--GGE--EDPLEAGQLVVLEDGDEIELTAGEEGARFL 66 (104)
T ss_dssp ETT-EEEEEEEESEEEE--TTT--TEEEETTEEEEE-SECEEEEEESSSSEEEE
T ss_pred CCCCEEEEEEEECcEEE--CCC--cceECCCcEEEECCCceEEEEECCCCcEEE
Confidence 35678999999999644 553 26899999999999999999988 555433
No 81
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=94.55 E-value=0.17 Score=35.54 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=40.7
Q ss_pred cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee
Q 037642 12 FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA 59 (74)
Q Consensus 12 ~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~ 59 (74)
....-++++..|.+.+..++| +++.+.++.++++|++..+.....+.
T Consensus 36 ~~~~~li~v~~G~~~i~~~~g-~~l~i~~p~~~~~p~~~~~~~~~~~~ 82 (291)
T PRK15186 36 LLQSVLIKLTTGKISITTSSG-EYITASGPMLIFLAKDQTIHITMEET 82 (291)
T ss_pred ecceEEEEeccceEEEEeCCC-ceEEeCCCeEEEEeCCcEEEEEeccc
Confidence 346789999999999999887 57999999999999999998765543
No 82
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=94.53 E-value=0.3 Score=33.27 Aligned_cols=47 Identities=19% Similarity=0.353 Sum_probs=41.5
Q ss_pred ceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeE
Q 037642 14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60 (74)
Q Consensus 14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~ 60 (74)
++-.+.||+|++.--.++..+...+.|||...+|+|...+.+..+..
T Consensus 119 ad~y~tIL~G~~~~~~~g~~~~evy~pGd~~~l~rg~a~~y~m~~~t 165 (216)
T PF04622_consen 119 ADDYFTILSGEQWAWSPGSLEPEVYKPGDSHHLPRGEAKQYQMPPGT 165 (216)
T ss_pred eeeEEEEEEEEEEEEcCCCCCceEeccCCEEEecCceEEEEEeCCCe
Confidence 68899999999999888876778899999999999999998887653
No 83
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=94.23 E-value=0.34 Score=30.72 Aligned_cols=43 Identities=21% Similarity=0.334 Sum_probs=39.2
Q ss_pred ceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee
Q 037642 14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV 58 (74)
Q Consensus 14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~ 58 (74)
..-+|+|+.|+=.+.+++ +.+.+.+|+.++.+.+.+.+-++.+
T Consensus 23 ~p~i~~vlQG~K~~~~g~--~~~~Y~~g~~lv~~~~lPv~~~v~~ 65 (155)
T PF06719_consen 23 EPSICIVLQGSKRVHLGD--QVFEYDAGQYLVSSVDLPVESEVVE 65 (155)
T ss_pred CCeEEEEEeeeEEEEECC--ceEEecCCcEEEecCCCcEEEEEee
Confidence 578999999999999998 4799999999999999999999843
No 84
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=94.09 E-value=0.16 Score=35.75 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=33.1
Q ss_pred eEEEecCc-eEEEEEEecEEEEEeCC---------------------CceEEEECCCcEEEEcCCCeEEEEEeee
Q 037642 7 KFQLKFDA-EETCYLLKGKVKVYPKG---------------------SSDWVEFGAGDLVTIPKGLSCTWDVSVA 59 (74)
Q Consensus 7 ~~~~~~~~-~E~~~vleG~~~~~~~~---------------------g~e~~~~~~GD~v~~p~g~~~~~~~~~~ 59 (74)
.+..|+|. +-+++=++|+=.-++-. -...+.++|||+++||+|+.|.-...+.
T Consensus 127 g~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~~~~ 201 (319)
T PF08007_consen 127 GFGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWHQAVTTDP 201 (319)
T ss_dssp ESECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EEEEEESS-
T ss_pred CccCEECCcccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccCCCCCCCC
Confidence 45667764 66666678876655432 0135889999999999999999998883
No 85
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=93.35 E-value=0.55 Score=29.91 Aligned_cols=60 Identities=22% Similarity=0.143 Sum_probs=41.2
Q ss_pred CceEEEecCceEEEEEEecEEEEEe----------------------CCCceEEEECCCcEEEEcCCCeEEEEEeeeEEE
Q 037642 5 PGKFQLKFDAEETCYLLKGKVKVYP----------------------KGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDK 62 (74)
Q Consensus 5 pg~~~~~~~~~E~~~vleG~~~~~~----------------------~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k 62 (74)
+..|..|..+-.+.++|+|+=.+.. +.+ ..+.++||++++|-++..|.---.+.+||
T Consensus 56 ~~~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~y~~e~D~~f~~~~~-~~v~l~~G~F~iffP~daH~P~~~~~ikK 134 (149)
T PRK10202 56 DALFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCG-ETVEVHEGQIVICDIHEAYRFICNNAVKK 134 (149)
T ss_pred cccccccccEEEEEEEEeCeEEEEEEEcccCccccccCcccCeeeccCCC-cEEEeCCCeEEEECCcccccCCCCCcEEE
Confidence 3455667777888888888766542 122 36788999999988888777655555666
Q ss_pred EEE
Q 037642 63 YYK 65 (74)
Q Consensus 63 ~y~ 65 (74)
.=+
T Consensus 135 ~Vv 137 (149)
T PRK10202 135 VVL 137 (149)
T ss_pred EEE
Confidence 544
No 86
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=93.25 E-value=0.17 Score=35.20 Aligned_cols=51 Identities=12% Similarity=0.101 Sum_probs=30.1
Q ss_pred CceEEEEEEecEEEEEeCCCc-eEEEECCCcEEEEcCCCeEEEEEeeeEEEEEE
Q 037642 13 DAEETCYLLKGKVKVYPKGSS-DWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYK 65 (74)
Q Consensus 13 ~~~E~~~vleG~~~~~~~~g~-e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~ 65 (74)
..++-++||+|.+.. ++.+ +...|.+|..+++|+|..+.--..+.-...|+
T Consensus 55 ~~~~~~~Vi~G~~~~--~~~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~ 106 (251)
T PF14499_consen 55 NADYRGTVISGELHN--GDPKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFI 106 (251)
T ss_dssp SS-EEEEEEESEEEE--TTEE-----E-TTEEEEE-TT-EEEETTS-EE-EEEE
T ss_pred eeeEEEEEEEeEEEc--CCCcccceecCCCceEeccCCCceeeeccCccEEEEE
Confidence 478999999998665 3321 23559999999999997766555554435565
No 87
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=92.71 E-value=1.2 Score=25.94 Aligned_cols=46 Identities=17% Similarity=0.077 Sum_probs=36.8
Q ss_pred ceEEEEEEecEEEEEeCCC-----ceEEEECCCcEEEEcCCCeEEEEEeee
Q 037642 14 AEETCYLLKGKVKVYPKGS-----SDWVEFGAGDLVTIPKGLSCTWDVSVA 59 (74)
Q Consensus 14 ~~E~~~vleG~~~~~~~~g-----~e~~~~~~GD~v~~p~g~~~~~~~~~~ 59 (74)
......||+|++.+...+. .+...+.+|+..+|++...|.-+-..+
T Consensus 25 tWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~ 75 (82)
T PF09313_consen 25 TWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSD 75 (82)
T ss_dssp EEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESST
T ss_pred eEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCC
Confidence 4677899999999997654 356889999999999999999886665
No 88
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=92.27 E-value=0.42 Score=34.66 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=41.8
Q ss_pred ecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEE
Q 037642 11 KFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVD 61 (74)
Q Consensus 11 ~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~ 61 (74)
..+.+-++.=..|...|+.+-| ...+.|+++.+||+|.+..-++.++.|
T Consensus 152 NsDGDFLiVPQ~G~L~I~TEfG--rllV~P~EI~VIpqG~RFsi~v~~~sR 200 (446)
T KOG1417|consen 152 NSDGDFLIVPQQGRLWITTEFG--RLLVTPNEIAVIPQGIRFSIDVPGPSR 200 (446)
T ss_pred cCCCCEEEecccCcEEEEeecc--ceeecccceEEeecccEEEEecCCCCc
Confidence 3456777777889999999997 489999999999999999999988753
No 89
>PRK11396 hypothetical protein; Provisional
Probab=91.67 E-value=2 Score=28.81 Aligned_cols=64 Identities=11% Similarity=0.073 Sum_probs=46.0
Q ss_pred ceEEEecCceEEEEEEec-EEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee-E-EEEEEEecCC
Q 037642 6 GKFQLKFDAEETCYLLKG-KVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA-V-DKYYKFESTS 70 (74)
Q Consensus 6 g~~~~~~~~~E~~~vleG-~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~-~-~k~y~~~~~~ 70 (74)
|.|..-...+-++.+|+| .+.+..++. ....+++++.+.|+.+.....+..+. + +.+=++.+.+
T Consensus 47 GpFS~FpGidR~i~lL~G~g~~L~~~~~-~~~~l~~~~p~~F~Gd~~v~a~L~~G~v~~dfNvM~rr~ 113 (191)
T PRK11396 47 GEFSLFPGMERIVTLLEGGEMFLESADR-FNHTLKPLQPFAFAADQVVKAKLTAGQMSMDFNIMTRLD 113 (191)
T ss_pred CCCCCCCCccEEEEEEECCCEEEeeCCc-cceecCCCCCeEeCCCCeeEEEECCCCeEEEEEEEecCC
Confidence 334333447899999998 677777765 35678999999999999999987654 4 5455555443
No 90
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=91.43 E-value=2.8 Score=27.54 Aligned_cols=57 Identities=21% Similarity=0.180 Sum_probs=42.5
Q ss_pred CceEEEEEEecEEEEEeCCC---c------eEEEECC--CcEEEEcCCCeEEEEEeee-EEEEEEEecC
Q 037642 13 DAEETCYLLKGKVKVYPKGS---S------DWVEFGA--GDLVTIPKGLSCTWDVSVA-VDKYYKFEST 69 (74)
Q Consensus 13 ~~~E~~~vleG~~~~~~~~g---~------e~~~~~~--GD~v~~p~g~~~~~~~~~~-~~k~y~~~~~ 69 (74)
.+..++.|+.|.+...+-|- + ..+.|.+ +-+++||+|.-|-+.+.+. ..-.|+++.+
T Consensus 66 ~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~a~v~Y~~~~~ 134 (176)
T TIGR01221 66 PQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDEAEFLYKCTDY 134 (176)
T ss_pred CCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCCeEEEEeCCCC
Confidence 37999999999998775322 1 2356666 6699999999999998654 6677776544
No 91
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=91.23 E-value=0.29 Score=33.80 Aligned_cols=45 Identities=20% Similarity=0.339 Sum_probs=35.2
Q ss_pred EEecC-ceEEEEEEecEEEEEeCCC--ceEEEECCCcEEEEcCCCeEE
Q 037642 9 QLKFD-AEETCYLLKGKVKVYPKGS--SDWVEFGAGDLVTIPKGLSCT 53 (74)
Q Consensus 9 ~~~~~-~~E~~~vleG~~~~~~~~g--~e~~~~~~GD~v~~p~g~~~~ 53 (74)
.+|.+ .+|++|-+.|.+.+.+-+. .+.+.++.||++++|+..+|.
T Consensus 47 dyHieegeE~FyQ~KGdMvLKVie~g~~rDivI~qGe~flLParVpHS 94 (279)
T KOG3995|consen 47 DYHIEEGEEVFYQLKGDMVLKVLEQGKHRDVVIRQGEIFLLPARVPHS 94 (279)
T ss_pred ccccCCcchhheeecCceEEeeeccCcceeeEEecCcEEEeccCCCCC
Confidence 46654 5899999999999886332 235789999999999988764
No 92
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=91.03 E-value=0.66 Score=27.02 Aligned_cols=25 Identities=20% Similarity=0.054 Sum_probs=17.4
Q ss_pred EEEECCCcEEEEcCCCeEEEEEeee
Q 037642 35 WVEFGAGDLVTIPKGLSCTWDVSVA 59 (74)
Q Consensus 35 ~~~~~~GD~v~~p~g~~~~~~~~~~ 59 (74)
.+.-+|||+|++|+|+-|.-...+.
T Consensus 82 ~~~Q~~Ge~V~i~pg~~H~v~n~g~ 106 (114)
T PF02373_consen 82 RFVQKPGEFVFIPPGAYHQVFNLGD 106 (114)
T ss_dssp EEEEETT-EEEE-TT-EEEEEESSS
T ss_pred cceECCCCEEEECCCceEEEEeCCc
Confidence 4678999999999999887665554
No 93
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=89.93 E-value=4 Score=26.76 Aligned_cols=55 Identities=18% Similarity=0.224 Sum_probs=39.6
Q ss_pred ceEEEEEEecEEEEEeCCC---------ceEEEECCCc--EEEEcCCCeEEEEEeee-EEEEEEEec
Q 037642 14 AEETCYLLKGKVKVYPKGS---------SDWVEFGAGD--LVTIPKGLSCTWDVSVA-VDKYYKFES 68 (74)
Q Consensus 14 ~~E~~~vleG~~~~~~~~g---------~e~~~~~~GD--~v~~p~g~~~~~~~~~~-~~k~y~~~~ 68 (74)
+..++.|+.|.+...+-+- -..+.|.+++ .++||+|.-|-+.+.+. ..-.|.+..
T Consensus 67 q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y~~t~ 133 (176)
T PF00908_consen 67 QAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLYKVTN 133 (176)
T ss_dssp EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEEEESS
T ss_pred CCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEEEecCC
Confidence 4789999999887765321 1346677765 79999999999998886 456666543
No 94
>COG1741 Pirin-related protein [General function prediction only]
Probab=89.42 E-value=1.7 Score=30.55 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=38.8
Q ss_pred ecCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEE
Q 037642 11 KFDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDV 56 (74)
Q Consensus 11 ~~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~ 56 (74)
|.+.+-+-|+|+|+++-++..|+ ...++|||+-.+-+|.-...+=
T Consensus 62 Hrg~etvTyvl~G~i~HrDS~Gn-~~~i~pGdvqwMTAG~GI~HSE 106 (276)
T COG1741 62 HRGLETVTYVLDGEIEHRDSLGN-KGVIRPGDVQWMTAGSGIVHSE 106 (276)
T ss_pred CCCcEEEEEEEccEEEEeecCCc-eeeecccceeEEcCCCceeecc
Confidence 45677888999999999999985 7999999999999998776653
No 95
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=89.41 E-value=2.6 Score=27.31 Aligned_cols=59 Identities=20% Similarity=0.164 Sum_probs=42.3
Q ss_pred ceEEEecCceEEEEEEecEEEEEeC------------------------CCceEEEECCCcEEEEcCCCeEEEEE----e
Q 037642 6 GKFQLKFDAEETCYLLKGKVKVYPK------------------------GSSDWVEFGAGDLVTIPKGLSCTWDV----S 57 (74)
Q Consensus 6 g~~~~~~~~~E~~~vleG~~~~~~~------------------------~g~e~~~~~~GD~v~~p~g~~~~~~~----~ 57 (74)
+.+..|..+-.+.++|+|.=.+... +. ..+++.||++++|=+|..|.-.+ .
T Consensus 61 ~~~E~HrkYiDiqill~G~E~i~~s~~~~~~~~e~y~~e~Di~~~~~~~~e-~~v~L~~G~faiFfP~e~H~P~c~~~~~ 139 (154)
T COG2731 61 KKFELHRKYIDIQILLKGQEGIEYSPKETAQVKEDYDEEKDIIFYKGIEDE-STVELNPGMFAIFFPGEPHRPGCNVGVP 139 (154)
T ss_pred cchhhhhheEEEEEEEeceeeeEEccCcCCccccccccccCEEeecCCccc-eEEEeCCCCEEEECCCCccccccccCCc
Confidence 3456677788899999998665531 22 56899999999997777766553 4
Q ss_pred eeEEEEEE
Q 037642 58 VAVDKYYK 65 (74)
Q Consensus 58 ~~~~k~y~ 65 (74)
+++||+-+
T Consensus 140 ~~IkKvVv 147 (154)
T COG2731 140 EPIKKVVV 147 (154)
T ss_pred ceeEEEEE
Confidence 67887654
No 96
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=89.38 E-value=2.9 Score=28.76 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=29.2
Q ss_pred eEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeE
Q 037642 15 EETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60 (74)
Q Consensus 15 ~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~ 60 (74)
..+...+.|.-.....++ .+.|.||+.+.|++|.-|.|......
T Consensus 137 ~~v~V~~DG~~~t~~aG~--~l~L~PGESiTL~Pg~yH~Fw~e~g~ 180 (225)
T PF07385_consen 137 TDVTVPVDGIRRTVPAGT--QLRLNPGESITLPPGIYHWFWGEGGD 180 (225)
T ss_dssp S-EEEEETTEEEEE-TT---EEEE-TT-EEEE-TTEEEEEEE-TTS
T ss_pred CCeEEecCCcEEEecCCc--eEEeCCCCeEeeCCCCeeeEEecCCC
Confidence 345566677777666664 69999999999999999999876654
No 97
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=89.36 E-value=1.4 Score=30.83 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=42.3
Q ss_pred CceEEEEE-EecEEEEEeCCCceEEEECCCcEEEEcCC-CeEEEEEeee--EEEEEEEecCC
Q 037642 13 DAEETCYL-LKGKVKVYPKGSSDWVEFGAGDLVTIPKG-LSCTWDVSVA--VDKYYKFESTS 70 (74)
Q Consensus 13 ~~~E~~~v-leG~~~~~~~~g~e~~~~~~GD~v~~p~g-~~~~~~~~~~--~~k~y~~~~~~ 70 (74)
+..|+-.| +-|.++|+.+| +.+++.+.|++++-.| ...+|.-... -.|||+..+|-
T Consensus 74 eRRElgiINIG~~G~i~v~g--~~y~l~~rd~LYvg~G~~dv~F~s~d~~~pAkFY~~sapA 133 (278)
T COG3717 74 ERRELGIINIGGPGTITVDG--QEYELGHRDALYVGMGAKDVTFSSIDGAAPAKFYYVSAPA 133 (278)
T ss_pred eeeeeeEEeeCCCceEEECC--EEEEeccccEEEEecCccceEEeccCCCCcceEEEeeccc
Confidence 45565554 56778888888 5799999999999999 5666766553 35899988874
No 98
>PHA02984 hypothetical protein; Provisional
Probab=88.62 E-value=5.5 Score=28.28 Aligned_cols=49 Identities=10% Similarity=-0.047 Sum_probs=38.6
Q ss_pred ecCceEEEEEEecEEEEEeCCCc--eEEEECCCcEEEEcCCCeEEEEEeee
Q 037642 11 KFDAEETCYLLKGKVKVYPKGSS--DWVEFGAGDLVTIPKGLSCTWDVSVA 59 (74)
Q Consensus 11 ~~~~~E~~~vleG~~~~~~~~g~--e~~~~~~GD~v~~p~g~~~~~~~~~~ 59 (74)
...+.-|..+|+|++.+....++ -+..+++||+|.+--+.+|.-.+...
T Consensus 90 esnEy~FvlCl~G~~~I~~~~~~~~is~~I~kGeaf~md~~t~h~i~T~~k 140 (286)
T PHA02984 90 ESNEYMFVLCLNGKTSIECFNKGSKITNTIKKGEAFTLNLKTKYVTTTKDK 140 (286)
T ss_pred eeccEEEEEEcCCeEEEEEecCCceeeeEEecCceEEEEccceEEEEeCCC
Confidence 34466788899999999875553 34679999999999999998887744
No 99
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=88.36 E-value=2.3 Score=27.94 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=26.9
Q ss_pred cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeE
Q 037642 12 FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSC 52 (74)
Q Consensus 12 ~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~ 52 (74)
....-++|+++|.+.+..++ +.+.+.+||.+.+-.....
T Consensus 133 ~~~~~l~~~~~G~~~i~~~~--~~~~L~~~d~l~~~~~~~~ 171 (184)
T PF05962_consen 133 AASTVLVYVLEGAWSITEGG--NCISLSAGDLLLIDDEEDL 171 (184)
T ss_dssp --SEEEEEESSS-EEECCCE--EEEEE-TT-EEEEESEECE
T ss_pred CCCEEEEEEeeCcEEEecCC--CceEcCCCCEEEEeCCCce
Confidence 34567789999987777664 4799999999999885444
No 100
>PRK15044 transcriptional regulator SirC; Provisional
Probab=88.29 E-value=1.9 Score=30.74 Aligned_cols=45 Identities=20% Similarity=0.154 Sum_probs=39.3
Q ss_pred CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee
Q 037642 13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV 58 (74)
Q Consensus 13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~ 58 (74)
...-++.+-.|..+++++.| |.+.+.+-+++++|+|........+
T Consensus 39 ~~~~l~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~k~~~i~~~~~~ 83 (295)
T PRK15044 39 ANCLLFKLNKGSLRIENEFG-EFIEQSAPCLFLLEKDQTITLSMSE 83 (295)
T ss_pred cceEEEEEecCeEEEEecCC-ceEEecCCeeEEEeCCCEEEEeHhh
Confidence 35677888999999999999 7999999999999999998876544
No 101
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=87.74 E-value=0.34 Score=33.85 Aligned_cols=20 Identities=20% Similarity=0.589 Sum_probs=18.0
Q ss_pred EEEECCCcEEEEcCCCeEEE
Q 037642 35 WVEFGAGDLVTIPKGLSCTW 54 (74)
Q Consensus 35 ~~~~~~GD~v~~p~g~~~~~ 54 (74)
.+.++|||+++||+|..|.-
T Consensus 152 ~v~v~~Gd~i~ipaGt~HA~ 171 (302)
T TIGR00218 152 RIKLKPGDFFYVPSGTPHAY 171 (302)
T ss_pred ccccCCCCEEEeCCCCcccc
Confidence 47899999999999999973
No 102
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=87.36 E-value=0.58 Score=33.52 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=18.7
Q ss_pred EEEECCCcEEEEcCCCeEEEE
Q 037642 35 WVEFGAGDLVTIPKGLSCTWD 55 (74)
Q Consensus 35 ~~~~~~GD~v~~p~g~~~~~~ 55 (74)
.+.++|||++++|+|+.|..-
T Consensus 159 ~v~lkpGe~~fl~Agt~HA~~ 179 (312)
T COG1482 159 RVKLKPGEAFFLPAGTPHAYL 179 (312)
T ss_pred EEecCCCCEEEecCCCceeec
Confidence 588999999999999999753
No 103
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=87.03 E-value=2 Score=34.09 Aligned_cols=55 Identities=15% Similarity=0.364 Sum_probs=41.1
Q ss_pred cCCceEEEec--CceEEEEEEecEEEEEeCCC---ceEEEECCCcEEE---------EcCCCeEEEEEeee
Q 037642 3 CSPGKFQLKF--DAEETCYLLKGKVKVYPKGS---SDWVEFGAGDLVT---------IPKGLSCTWDVSVA 59 (74)
Q Consensus 3 ~~pg~~~~~~--~~~E~~~vleG~~~~~~~~g---~e~~~~~~GD~v~---------~p~g~~~~~~~~~~ 59 (74)
++||.+-.+- ...++++|++|.+.+...++ .....+++||++= +|. +.+-++.+.
T Consensus 447 f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~GeEl~~~~~~~p~--t~TVralt~ 515 (727)
T KOG0498|consen 447 FTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFGEELLTWCLDLPQ--TRTVRALTY 515 (727)
T ss_pred cCCCCeEEecCCccceeEEEEeeeEEEEEccCCceEEEEEecCCCccchHHHHHHhcCCC--Cceeehhhh
Confidence 6788886664 35999999999999998774 2357899999987 777 444444443
No 104
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=86.88 E-value=3.4 Score=22.27 Aligned_cols=63 Identities=17% Similarity=0.196 Sum_probs=39.2
Q ss_pred CCceEEEec--CceEEEEEEecEEEEEeCCCc-e---EEEECCCcEEEE-----cCCCeEEEEEeeeEEEEEEEe
Q 037642 4 SPGKFQLKF--DAEETCYLLKGKVKVYPKGSS-D---WVEFGAGDLVTI-----PKGLSCTWDVSVAVDKYYKFE 67 (74)
Q Consensus 4 ~pg~~~~~~--~~~E~~~vleG~~~~~~~~g~-e---~~~~~~GD~v~~-----p~g~~~~~~~~~~~~k~y~~~ 67 (74)
.+|..-+.. ..+.+++|++|.+.+...+.. + ...+.+||++-. ......+..+.+++ .+|.+.
T Consensus 5 ~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~-~~~~i~ 78 (91)
T PF00027_consen 5 KKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGKPSPFTVIALTDS-EVLRIP 78 (91)
T ss_dssp STTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTSBBSSEEEESSSE-EEEEEE
T ss_pred CCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCCccEEEEEEccCE-EEEEEe
Confidence 355554443 368999999999999864432 2 246889998743 22345555555565 455544
No 105
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=85.01 E-value=7.7 Score=27.23 Aligned_cols=58 Identities=22% Similarity=0.336 Sum_probs=41.7
Q ss_pred CceEEEE-EEecEEEEEeCCCc--------eEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEecCCC
Q 037642 13 DAEETCY-LLKGKVKVYPKGSS--------DWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESTSS 71 (74)
Q Consensus 13 ~~~E~~~-vleG~~~~~~~~g~--------e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~~~~~ 71 (74)
...|.|+ ++.|.+++...+.. ..++=+|=|.|++|+|...+.+....+ .+-++++|..
T Consensus 47 ~~~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~vtA~t~~-~vAvC~AP~~ 113 (270)
T COG3718 47 GDRERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVPAGSAFSVTATTDL-EVAVCSAPGK 113 (270)
T ss_pred CCceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEecCCceEEEEeecce-EEEEEeCCCC
Confidence 3455555 57999999987741 112223669999999999888887776 6777888763
No 106
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=84.79 E-value=1.1 Score=32.82 Aligned_cols=20 Identities=10% Similarity=0.210 Sum_probs=18.0
Q ss_pred EEEECCCcEEEEcCCCeEEE
Q 037642 35 WVEFGAGDLVTIPKGLSCTW 54 (74)
Q Consensus 35 ~~~~~~GD~v~~p~g~~~~~ 54 (74)
.+.++|||++++|+|..|..
T Consensus 238 ~v~l~pGeaifipAg~~HAy 257 (389)
T PRK15131 238 VVKLNPGEAMFLFAETPHAY 257 (389)
T ss_pred EEEeCCCCEEEeCCCCCeEE
Confidence 58899999999999999874
No 107
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=83.98 E-value=8.3 Score=24.23 Aligned_cols=60 Identities=17% Similarity=0.205 Sum_probs=34.3
Q ss_pred ceEEEecCceEEEEEEecEEEEEe-C----------------------C-CceEEEECCCcEEEEcCCCeEEEE--Ee--
Q 037642 6 GKFQLKFDAEETCYLLKGKVKVYP-K----------------------G-SSDWVEFGAGDLVTIPKGLSCTWD--VS-- 57 (74)
Q Consensus 6 g~~~~~~~~~E~~~vleG~~~~~~-~----------------------~-g~e~~~~~~GD~v~~p~g~~~~~~--~~-- 57 (74)
..|..|...--++++|+|+=.+.. . + ....+.++||+.++|-|+..|.=. +.
T Consensus 61 ~~~E~HrkyiDiq~~l~G~E~i~~~~~~~~~~~~~~yd~~~D~~f~~~~~~~~~i~l~~g~f~iffP~d~H~p~~~~~~~ 140 (153)
T PF04074_consen 61 RRFESHRKYIDIQYVLEGEERIGWSADIEDLEVVQPYDEEKDIAFYEDGKNESFITLKPGDFAIFFPEDAHRPGCAVDEP 140 (153)
T ss_dssp S-EEE-SSEEEEEEEEES-EEEEEE-S---GGGS---BTTTTBEEES--TTEEEEEE-TTEEEEE-TT--EEEEE-BTT-
T ss_pred cceeeeccEEEEEeeccccEEEEEEcCcccCcccccCCCCCCEEEecCCCCceEEEEcCCEEEEECCCccccccccCCCC
Confidence 346778888889999999876665 1 1 112467999999999888888833 33
Q ss_pred eeEEEEEE
Q 037642 58 VAVDKYYK 65 (74)
Q Consensus 58 ~~~~k~y~ 65 (74)
+++||.=+
T Consensus 141 ~~v~K~V~ 148 (153)
T PF04074_consen 141 EPVRKVVF 148 (153)
T ss_dssp -B-EEEEE
T ss_pred ceEEEEEE
Confidence 35666543
No 108
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=83.95 E-value=2.9 Score=24.76 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=17.5
Q ss_pred EEEECCCcEEEEcCCCeEEEEEe
Q 037642 35 WVEFGAGDLVTIPKGLSCTWDVS 57 (74)
Q Consensus 35 ~~~~~~GD~v~~p~g~~~~~~~~ 57 (74)
+..+++||.|+|++......+..
T Consensus 56 ~~~vk~GD~Vlf~~~~g~ev~~~ 78 (95)
T PRK00364 56 PLDVKVGDKVLFGKYAGTEVKID 78 (95)
T ss_pred ecccCCCCEEEEcCCCCeEEEEC
Confidence 45699999999998766555553
No 109
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.94 E-value=1.1 Score=34.40 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=23.4
Q ss_pred EECCCcEEEEcCCCeEEEEEeeeEEEEE
Q 037642 37 EFGAGDLVTIPKGLSCTWDVSVAVDKYY 64 (74)
Q Consensus 37 ~~~~GD~v~~p~g~~~~~~~~~~~~k~y 64 (74)
-++|||+++||.|.-|+.++.+.+.-+-
T Consensus 384 vle~GDllYfPRG~IHQA~t~~~vHSlH 411 (629)
T KOG3706|consen 384 VLEPGDLLYFPRGTIHQADTPALVHSLH 411 (629)
T ss_pred hcCCCcEEEecCcceeeccccchhceeE
Confidence 4899999999999999999888654433
No 110
>PHA02890 hypothetical protein; Provisional
Probab=83.45 E-value=13 Score=26.22 Aligned_cols=47 Identities=13% Similarity=-0.026 Sum_probs=37.4
Q ss_pred EecCceEEEEEEecEEEEEeCCCc--eEEEECCCcEEEEcCCCeEEEEE
Q 037642 10 LKFDAEETCYLLKGKVKVYPKGSS--DWVEFGAGDLVTIPKGLSCTWDV 56 (74)
Q Consensus 10 ~~~~~~E~~~vleG~~~~~~~~g~--e~~~~~~GD~v~~p~g~~~~~~~ 56 (74)
+...+.-|+.+|+|++.+....+. -+..+++||+|.+--+.+|.-.+
T Consensus 88 ~eSnEy~FVlCL~Gs~~In~~~~d~~iS~~I~kGeaF~mdv~t~H~i~T 136 (278)
T PHA02890 88 MKKIECFFVACIEGSCKINVNIGDREISDHIHENQGFIMDVGLDHAIDS 136 (278)
T ss_pred EeeccEEEEEEeCCeEEEEEecCCceeeeeeecCceEEEEccceEEEEc
Confidence 334466788899999999875542 34679999999999999998876
No 111
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=83.35 E-value=7.2 Score=24.74 Aligned_cols=52 Identities=6% Similarity=-0.003 Sum_probs=30.8
Q ss_pred eEEEEEEecEEEEEe--CCCceE--EEECCCcEEEEc----CCCeEEEEEeeeEEEEEEEe
Q 037642 15 EETCYLLKGKVKVYP--KGSSDW--VEFGAGDLVTIP----KGLSCTWDVSVAVDKYYKFE 67 (74)
Q Consensus 15 ~E~~~vleG~~~~~~--~~g~e~--~~~~~GD~v~~p----~g~~~~~~~~~~~~k~y~~~ 67 (74)
+.+++|++|.+.+.. .+|.+. ..+.|||++-.+ ...+.+....+++ .++.++
T Consensus 27 ~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~~~~~~~~~~A~~~~-~v~~i~ 86 (202)
T PRK13918 27 DMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALAGAERAYFAEAVTDS-RIDVLN 86 (202)
T ss_pred CeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhcCCCCCceEEEcCce-EEEEEE
Confidence 679999999998865 344322 235899987443 2233444445554 334443
No 112
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=81.75 E-value=3.5 Score=24.29 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=21.5
Q ss_pred EEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEe
Q 037642 35 WVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE 67 (74)
Q Consensus 35 ~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~ 67 (74)
+..+++||.|+||+......+..+ .+..+++
T Consensus 55 ~~~vk~GD~Vl~~~~~g~~v~~~~--~~y~i~~ 85 (93)
T cd00320 55 PLSVKVGDKVLFPKYAGTEVKLDG--EEYLILR 85 (93)
T ss_pred cccccCCCEEEECCCCceEEEECC--EEEEEEE
Confidence 467999999999997765555533 3444444
No 113
>COG3097 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.57 E-value=1.7 Score=26.37 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=28.7
Q ss_pred EEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEE
Q 037642 19 YLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDV 56 (74)
Q Consensus 19 ~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~ 56 (74)
-||.|+-++++.+.+ +..++|||.+.+-......+-+
T Consensus 15 dilagrKTITIRD~S-EShf~~g~vlrV~r~Ed~~~fc 51 (106)
T COG3097 15 DILAGRKTITIRDKS-ESHFKPGDVLRVGRFEDDRYFC 51 (106)
T ss_pred HHhCCCceEEEeccc-hhcCCCCCEEEEEEecCCcEEE
Confidence 378999999999875 5899999999876555544443
No 114
>PRK04980 hypothetical protein; Provisional
Probab=80.03 E-value=2.9 Score=25.41 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=31.6
Q ss_pred EEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEE
Q 037642 19 YLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYY 64 (74)
Q Consensus 19 ~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y 64 (74)
.||+|.=++++.++. ...++|||.+.+=-...+++-+.-.+..+.
T Consensus 14 ~ILsGkKTiTiRd~s-e~~~~~G~~~~V~~~e~g~~~c~ieI~sV~ 58 (102)
T PRK04980 14 DILAGRKTITIRDES-ESHFKPGDVLRVGTFEDDRYFCTIEVLSVS 58 (102)
T ss_pred HHHcCCceEEeeCCc-ccCCCCCCEEEEEECCCCcEEEEEEEEEEE
Confidence 478999999998873 579999999999544445555444444433
No 115
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=79.56 E-value=1.4 Score=27.17 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=24.6
Q ss_pred EEEEEEecE---EEEEeCCCceEEEECCCcEEEEcC
Q 037642 16 ETCYLLKGK---VKVYPKGSSDWVEFGAGDLVTIPK 48 (74)
Q Consensus 16 E~~~vleG~---~~~~~~~g~e~~~~~~GD~v~~p~ 48 (74)
-.-|++.|. ..+.++|. .-..+++||.++|=.
T Consensus 54 f~TYvI~g~~gSg~I~lNGA-AAr~~~~GD~vII~s 88 (111)
T cd06919 54 FETYVIPGERGSGVICLNGA-AARLGQPGDRVIIMA 88 (111)
T ss_pred EEEEEEEcCCCCCEEEeCCH-HHhcCCCCCEEEEEE
Confidence 334666665 89999998 468999999999843
No 116
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=78.43 E-value=16 Score=24.03 Aligned_cols=54 Identities=19% Similarity=0.186 Sum_probs=38.8
Q ss_pred EEEecCc-eEEEEEEecEEEEEeCC---Cc------eEEEECCC--cEEEEcCCCeEEEEEeeeEE
Q 037642 8 FQLKFDA-EETCYLLKGKVKVYPKG---SS------DWVEFGAG--DLVTIPKGLSCTWDVSVAVD 61 (74)
Q Consensus 8 ~~~~~~~-~E~~~vleG~~~~~~~~---g~------e~~~~~~G--D~v~~p~g~~~~~~~~~~~~ 61 (74)
++++... .+++.|+.|++....-+ ++ ....+.+- -.+.||+|.-|-+.+.+.-.
T Consensus 60 lHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~ 125 (173)
T COG1898 60 LHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDA 125 (173)
T ss_pred EEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCce
Confidence 3455444 89999999999877522 21 12445554 78999999999999988753
No 117
>COG3758 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.18 E-value=6.9 Score=26.34 Aligned_cols=47 Identities=9% Similarity=0.059 Sum_probs=38.7
Q ss_pred cCceEEEEEEecE-EEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee
Q 037642 12 FDAEETCYLLKGK-VKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV 58 (74)
Q Consensus 12 ~~~~E~~~vleG~-~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~ 58 (74)
...+-+.-+|+|. +++.+++......+.+.+.+.||...........
T Consensus 58 pGidR~lsvLeG~gm~L~~~~~~~~~l~~~~qp~aF~gD~~v~a~L~~ 105 (193)
T COG3758 58 PGIDRILSVLEGGGMTLSSAGRAPVVLLRPLQPFAFAGDVPVHARLTG 105 (193)
T ss_pred CCcceEEEEEecCceEEecCCCccceecCCCCcccccCCceEEEEEec
Confidence 3478899999999 8888888446789999999999999777666555
No 118
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=78.15 E-value=14 Score=23.09 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=33.8
Q ss_pred CceEEEEEEecEEEEEe--CCCceE--EEECCCcEEEE----cCCC---eEEEEEeeeEEEEEEEec
Q 037642 13 DAEETCYLLKGKVKVYP--KGSSDW--VEFGAGDLVTI----PKGL---SCTWDVSVAVDKYYKFES 68 (74)
Q Consensus 13 ~~~E~~~vleG~~~~~~--~~g~e~--~~~~~GD~v~~----p~g~---~~~~~~~~~~~k~y~~~~ 68 (74)
+.+.+++|++|.+.+.. ++|++. ..+.|||++-. ..+. ..+..+.+++ .+|.+.+
T Consensus 10 ~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~-~v~~i~~ 75 (193)
T TIGR03697 10 PAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITGHRSDRFYHAVAFTRV-ELLAVPI 75 (193)
T ss_pred CCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccCCCCccceEEEEecce-EEEEeeH
Confidence 35789999999998764 444332 34799998743 2221 2345566665 5555543
No 119
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=77.95 E-value=15 Score=23.34 Aligned_cols=54 Identities=22% Similarity=0.302 Sum_probs=33.4
Q ss_pred CceEEEEEEecEEEEEe--CCCceE--EEECCCcEEEE----cCC--CeEEEEEeeeEEEEEEEe
Q 037642 13 DAEETCYLLKGKVKVYP--KGSSDW--VEFGAGDLVTI----PKG--LSCTWDVSVAVDKYYKFE 67 (74)
Q Consensus 13 ~~~E~~~vleG~~~~~~--~~g~e~--~~~~~GD~v~~----p~g--~~~~~~~~~~~~k~y~~~ 67 (74)
..+.+++|++|.+.+.. .+|++. ..+.+||++-. ... ...+..+.++. .+|.+.
T Consensus 37 ~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~~~-~v~~i~ 100 (211)
T PRK11753 37 KAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTAC-EVAEIS 100 (211)
T ss_pred CCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCceEEEEEcCcE-EEEEEc
Confidence 35789999999998874 334322 34899999833 322 33445555565 445444
No 120
>PRK15185 transcriptional regulator HilD; Provisional
Probab=77.74 E-value=8.5 Score=27.57 Aligned_cols=43 Identities=7% Similarity=0.071 Sum_probs=37.0
Q ss_pred CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEe
Q 037642 13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVS 57 (74)
Q Consensus 13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~ 57 (74)
...-++++-.|.++++.++| ++.+.|+.+.+|++|........
T Consensus 48 ~~~~l~~~~~~~~~i~~~~~--~~~~~~~~~~~~~k~~~i~~~~~ 90 (309)
T PRK15185 48 SSFTLVCFRSGKLTISNNHD--TIYCDEPGMLVLKKEQVVNVTLE 90 (309)
T ss_pred eeeEEEEEccceEEEEcCCc--eEEeCCCceEEEeCCcEEEEEhh
Confidence 45678889999999999996 68999999999999998877543
No 121
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=77.43 E-value=11 Score=25.67 Aligned_cols=35 Identities=23% Similarity=0.218 Sum_probs=23.6
Q ss_pred cEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEe
Q 037642 23 GKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVS 57 (74)
Q Consensus 23 G~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~ 57 (74)
|+..+....+...+...+||+++||....|.-.-+
T Consensus 130 GEl~~~~~~g~~~Vkp~aG~~vlfps~~lH~v~pV 164 (226)
T PRK05467 130 GELVIEDTYGEHRVKLPAGDLVLYPSTSLHRVTPV 164 (226)
T ss_pred CceEEecCCCcEEEecCCCeEEEECCCCceeeeec
Confidence 44444433333467788999999999888776643
No 122
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=77.09 E-value=10 Score=20.83 Aligned_cols=43 Identities=21% Similarity=0.348 Sum_probs=28.2
Q ss_pred CCceEEEec--CceEEEEEEecEEEEEeC--CCc--eEEEECCCcEEEE
Q 037642 4 SPGKFQLKF--DAEETCYLLKGKVKVYPK--GSS--DWVEFGAGDLVTI 46 (74)
Q Consensus 4 ~pg~~~~~~--~~~E~~~vleG~~~~~~~--~g~--e~~~~~~GD~v~~ 46 (74)
.+|.+-+.. ..+.+++|++|.+.+... +|. ....+.+||++-.
T Consensus 23 ~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 71 (120)
T smart00100 23 PAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGE 71 (120)
T ss_pred CCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceech
Confidence 455544443 358899999999988864 221 2245789998844
No 123
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=76.93 E-value=1.9 Score=27.24 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=23.5
Q ss_pred EEEEEecE---EEEEeCCCceEEEECCCcEEEEc
Q 037642 17 TCYLLKGK---VKVYPKGSSDWVEFGAGDLVTIP 47 (74)
Q Consensus 17 ~~~vleG~---~~~~~~~g~e~~~~~~GD~v~~p 47 (74)
--|++.|. ..+.++|. .-..+++||.++|=
T Consensus 56 ~TYvI~g~~GSg~I~lNGA-AAr~~~~GD~vII~ 88 (126)
T PRK05449 56 ETYVIAGERGSGVICLNGA-AARLVQVGDLVIIA 88 (126)
T ss_pred EEEEEEcCCCCCEEEeCCH-HHhcCCCCCEEEEE
Confidence 34666654 88999998 46899999999983
No 124
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=76.69 E-value=1.4 Score=32.45 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=19.9
Q ss_pred EEECCCcEEEEcCCCeEEEEEeeeE
Q 037642 36 VEFGAGDLVTIPKGLSCTWDVSVAV 60 (74)
Q Consensus 36 ~~~~~GD~v~~p~g~~~~~~~~~~~ 60 (74)
..+.|||+++||+|..|.=-..+.+
T Consensus 181 ~vlepGDiLYiPp~~~H~gvae~dc 205 (383)
T COG2850 181 EVLEPGDILYIPPGFPHYGVAEDDC 205 (383)
T ss_pred hhcCCCceeecCCCCCcCCcccccc
Confidence 4689999999999999876555443
No 125
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=76.54 E-value=6.3 Score=23.28 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=19.0
Q ss_pred EEEECCCcEEEEcCCCeEEEEEee
Q 037642 35 WVEFGAGDLVTIPKGLSCTWDVSV 58 (74)
Q Consensus 35 ~~~~~~GD~v~~p~g~~~~~~~~~ 58 (74)
+..+++||.|+|++......++.+
T Consensus 51 ~~~Vk~GD~Vl~~~y~g~ev~~~~ 74 (91)
T PRK14533 51 DFDIKVGDKVIFSKYAGTEIKIDD 74 (91)
T ss_pred cccccCCCEEEEccCCCeEEEECC
Confidence 467999999999987766666654
No 126
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=76.33 E-value=1.9 Score=27.16 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=23.5
Q ss_pred EEEEEecE---EEEEeCCCceEEEECCCcEEEEc
Q 037642 17 TCYLLKGK---VKVYPKGSSDWVEFGAGDLVTIP 47 (74)
Q Consensus 17 ~~~vleG~---~~~~~~~g~e~~~~~~GD~v~~p 47 (74)
--|++.|. ..+.++|. .-..+++||.++|=
T Consensus 56 ~TYvI~G~~GSg~I~lNGA-AArl~~~GD~VII~ 88 (126)
T TIGR00223 56 STYAIAGKRGSRIICVNGA-AARCVSVGDIVIIA 88 (126)
T ss_pred EEEEEEcCCCCCEEEeCCH-HHhcCCCCCEEEEE
Confidence 34666654 88999998 46889999999983
No 127
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=75.61 E-value=2.7 Score=29.21 Aligned_cols=49 Identities=12% Similarity=0.217 Sum_probs=27.5
Q ss_pred cCceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEE-EeeeE
Q 037642 12 FDAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWD-VSVAV 60 (74)
Q Consensus 12 ~~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~-~~~~~ 60 (74)
....|-.+||+|.+.+...+..+...|.+|-.|.-|++..|... ..+.+
T Consensus 189 h~~~eraVvI~G~~~~~~~~~~~~~~L~~GSYf~s~~~~~H~~~~~e~~~ 238 (251)
T PF14499_consen 189 HASNERAVVISGELDYQSYGASNFGTLDPGSYFGSPGHITHGIFITEDEC 238 (251)
T ss_dssp --S-EEEEEEEEEEEETTEEEETTEEEEE-TT-EE--E------EESS-E
T ss_pred cCCceEEEEEEeEEEEeecccCCCccccCCcccccCCcccccccccCCCE
Confidence 45688899999999996644334579999999999999999984 44443
No 128
>PLN02288 mannose-6-phosphate isomerase
Probab=74.97 E-value=2.7 Score=30.91 Aligned_cols=21 Identities=10% Similarity=0.281 Sum_probs=18.7
Q ss_pred EEEECCCcEEEEcCCCeEEEE
Q 037642 35 WVEFGAGDLVTIPKGLSCTWD 55 (74)
Q Consensus 35 ~~~~~~GD~v~~p~g~~~~~~ 55 (74)
.+.++|||++++|+|..|..-
T Consensus 252 ~v~L~PGeaifl~ag~~HAYl 272 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAYL 272 (394)
T ss_pred eEecCCCCEEEecCCCCceec
Confidence 489999999999999999764
No 129
>PRK09978 DNA-binding transcriptional regulator GadX; Provisional
Probab=74.37 E-value=15 Score=25.70 Aligned_cols=42 Identities=17% Similarity=0.117 Sum_probs=33.3
Q ss_pred ceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee
Q 037642 14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA 59 (74)
Q Consensus 14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~ 59 (74)
+.-++.+.+-.+++++++| +...+.|||++++-.+. +.+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~---~~~~~~ 47 (274)
T PRK09978 6 GNCLIAYARHKYILTMVNG-EYRYFNGGDLVFADASQ---IRVDKC 47 (274)
T ss_pred CCeEEEEEcceEEEEEcCC-ceeEecCCcEEEEeccc---cccccc
Confidence 3456677788999999999 68999999999997776 444444
No 130
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=74.01 E-value=9.7 Score=26.24 Aligned_cols=31 Identities=26% Similarity=0.172 Sum_probs=19.8
Q ss_pred cEEEEEeCCCceEEEECCCcEEEEcCCCeEEEE
Q 037642 23 GKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWD 55 (74)
Q Consensus 23 G~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~ 55 (74)
..+++..+| ...++.||..+.+.+|.+.+..
T Consensus 137 ~~v~V~~DG--~~~t~~aG~~l~L~PGESiTL~ 167 (225)
T PF07385_consen 137 TDVTVPVDG--IRRTVPAGTQLRLNPGESITLP 167 (225)
T ss_dssp S-EEEEETT--EEEEE-TT-EEEE-TT-EEEE-
T ss_pred CCeEEecCC--cEEEecCCceEEeCCCCeEeeC
Confidence 455566666 4689999999999999998875
No 131
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=73.73 E-value=3 Score=24.38 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=20.9
Q ss_pred EEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEe
Q 037642 35 WVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE 67 (74)
Q Consensus 35 ~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~ 67 (74)
+..+++||.|+||+......+. .-+++.+++
T Consensus 55 ~~~vk~GD~Vl~~~~~g~~v~~--~~~~~~~~~ 85 (93)
T PF00166_consen 55 PMDVKVGDKVLFPKYAGTEVKF--DGEKYLIVR 85 (93)
T ss_dssp ETSS-TTSEEEEETTTSEEEEE--TTEEEEEEE
T ss_pred eeeeeeccEEeccccCceEEEE--CCEEEEEEE
Confidence 4578999999999998766665 333444444
No 132
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=72.40 E-value=14 Score=20.20 Aligned_cols=63 Identities=21% Similarity=0.201 Sum_probs=38.1
Q ss_pred CCceEEEec--CceEEEEEEecEEEEEeCCC----ceEEEECCCcEEEEc-----CCCeEEEEEeeeEEEEEEEe
Q 037642 4 SPGKFQLKF--DAEETCYLLKGKVKVYPKGS----SDWVEFGAGDLVTIP-----KGLSCTWDVSVAVDKYYKFE 67 (74)
Q Consensus 4 ~pg~~~~~~--~~~E~~~vleG~~~~~~~~g----~e~~~~~~GD~v~~p-----~g~~~~~~~~~~~~k~y~~~ 67 (74)
.+|..-+.. ..+.+++|++|.+.+...+. .....+.+||.+-.. .....+..+.+++ .+|.+.
T Consensus 23 ~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~-~~~~i~ 96 (115)
T cd00038 23 PAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNGPRSATVRALTDS-ELLVLP 96 (115)
T ss_pred CCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcCCCCCceEEEcCce-EEEEEe
Confidence 345544433 35889999999999876542 123557889988652 3444555555554 444443
No 133
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=71.72 E-value=11 Score=25.63 Aligned_cols=44 Identities=18% Similarity=0.300 Sum_probs=34.5
Q ss_pred eEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeE
Q 037642 15 EETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60 (74)
Q Consensus 15 ~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~ 60 (74)
.++...+.|.-.-...++ .+.++||+.+.+|+|..|.+-..+..
T Consensus 136 s~vtv~~dg~r~~~~ag~--~lkL~PGesitL~Pg~~HsFwae~g~ 179 (225)
T COG3822 136 SDVTVPVDGCRQTHTAGS--QLKLSPGESITLPPGLYHSFWAEEGG 179 (225)
T ss_pred CCeEecCCCcEEEeccce--eEEECCCCcEecCCCceeeeeecCCc
Confidence 455666777766666664 59999999999999999998877664
No 134
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=71.69 E-value=5 Score=23.33 Aligned_cols=20 Identities=40% Similarity=0.326 Sum_probs=13.9
Q ss_pred EEECCCcEEEEcCCCeEEEE
Q 037642 36 VEFGAGDLVTIPKGLSCTWD 55 (74)
Q Consensus 36 ~~~~~GD~v~~p~g~~~~~~ 55 (74)
+..++||+++||....|.-.
T Consensus 68 ~~p~~G~lvlFPs~l~H~v~ 87 (101)
T PF13759_consen 68 VEPEEGDLVLFPSWLWHGVP 87 (101)
T ss_dssp E---TTEEEEEETTSEEEE-
T ss_pred eCCCCCEEEEeCCCCEEecc
Confidence 46778999999999888754
No 135
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown. It is found associated with prokaryotic bifunctional transcriptional repressors [] and eukaryotic enzymes involved in biotin utilization [, ]. In Escherichia coli the biotin operon repressor (BirA) is a bifunctional protein. BirA acts both as the acetyl-coA carboxylase biotin holoenzyme synthetase (6.3.4.15 from EC) and as the biotin operon repressor. DNA sequence analysis of mutations indicates that the helix-turn-helix DNA binding region is located at the N terminus while mutations affecting enzyme function, although mapping over a large region, are found mainly in the central part of the protein's primary sequence [].; GO: 0006464 protein modification process; PDB: 3RUX_A 2CGH_A 3L1A_B 3L2Z_A 1HXD_A 1BIB_A 2EWN_B 1BIA_A 2EJ9_A 3FJP_A ....
Probab=71.52 E-value=12 Score=19.13 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=16.4
Q ss_pred ecEEEEEeCCCceEEEECCCcEEE
Q 037642 22 KGKVKVYPKGSSDWVEFGAGDLVT 45 (74)
Q Consensus 22 eG~~~~~~~~g~e~~~~~~GD~v~ 45 (74)
.|...+..+++ ....+..||+.+
T Consensus 25 ~G~L~v~~~~g-~~~~i~sGdv~~ 47 (48)
T PF02237_consen 25 DGALLVRTEDG-SIRTISSGDVSL 47 (48)
T ss_dssp TSEEEEEETTE-EEEEESSSEEEE
T ss_pred CCEEEEEECCC-CEEEEEEEEEEe
Confidence 46677777776 467888888753
No 136
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=70.69 E-value=7.8 Score=23.72 Aligned_cols=27 Identities=41% Similarity=0.448 Sum_probs=19.3
Q ss_pred CCCcEEEEcCCCeEEEEEeeeEEEEEE
Q 037642 39 GAGDLVTIPKGLSCTWDVSVAVDKYYK 65 (74)
Q Consensus 39 ~~GD~v~~p~g~~~~~~~~~~~~k~y~ 65 (74)
.+||.|.||+|.....++..+..+..+
T Consensus 10 ~~g~~V~I~~g~~v~lD~~~~~l~~l~ 36 (125)
T PF10162_consen 10 GAGDNVVIPAGQTVLLDVSTPKLGSLI 36 (125)
T ss_pred CCCCEEEECCCCEEEEcCCChheeEEE
Confidence 468888888888888888754444443
No 137
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=69.58 E-value=12 Score=22.61 Aligned_cols=24 Identities=21% Similarity=0.113 Sum_probs=19.0
Q ss_pred EEEECCCcEEEEcCCCeEEEEEee
Q 037642 35 WVEFGAGDLVTIPKGLSCTWDVSV 58 (74)
Q Consensus 35 ~~~~~~GD~v~~p~g~~~~~~~~~ 58 (74)
+..+++||.|++|+-.....++.+
T Consensus 60 ~~~Vk~GD~Vl~~~y~Gtevk~dg 83 (100)
T PTZ00414 60 TPTVKVGDTVLLPEFGGSSVKVEG 83 (100)
T ss_pred cceecCCCEEEEcCCCCcEEEECC
Confidence 467999999999987766666654
No 138
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=68.57 E-value=30 Score=22.51 Aligned_cols=54 Identities=15% Similarity=0.083 Sum_probs=31.9
Q ss_pred ceEEEEEEecEEEEEe--CCCceE-E-EECCCcEEEEc----CCCeEEEEEeeeEEEEEEEec
Q 037642 14 AEETCYLLKGKVKVYP--KGSSDW-V-EFGAGDLVTIP----KGLSCTWDVSVAVDKYYKFES 68 (74)
Q Consensus 14 ~~E~~~vleG~~~~~~--~~g~e~-~-~~~~GD~v~~p----~g~~~~~~~~~~~~k~y~~~~ 68 (74)
.+.+++|++|.+.+.. ++|++. . .+.|||++-.+ ......-.+.++. ++|.+.+
T Consensus 55 ~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~~~~~~~~~~~a~~~~-~i~~ip~ 116 (235)
T PRK11161 55 LKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAIGSGQHPSFAQALETS-MVCEIPF 116 (235)
T ss_pred cceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccccCCCCcceEEEeccE-EEEEEEH
Confidence 5889999999998775 334332 2 25899998532 2223334444554 4554443
No 139
>PLN02868 acyl-CoA thioesterase family protein
Probab=68.31 E-value=20 Score=26.01 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=24.1
Q ss_pred CceEEEEEEecEEEEEeCC--Cce-EEEECCCcEEEE
Q 037642 13 DAEETCYLLKGKVKVYPKG--SSD-WVEFGAGDLVTI 46 (74)
Q Consensus 13 ~~~E~~~vleG~~~~~~~~--g~e-~~~~~~GD~v~~ 46 (74)
..+.+++|++|.+.+...+ |+. ...+++||++-.
T Consensus 48 ~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 48 PGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGY 84 (413)
T ss_pred cCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeeh
Confidence 3578999999999886633 211 245789998863
No 140
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=67.54 E-value=24 Score=27.16 Aligned_cols=67 Identities=21% Similarity=0.343 Sum_probs=48.0
Q ss_pred CCceEEEecC--ceEEEEEEecEEEEEeCCC-ceEEEECCCcEE------EEcC---CCeEEEEEeee-EEEEEEEecCC
Q 037642 4 SPGKFQLKFD--AEETCYLLKGKVKVYPKGS-SDWVEFGAGDLV------TIPK---GLSCTWDVSVA-VDKYYKFESTS 70 (74)
Q Consensus 4 ~pg~~~~~~~--~~E~~~vleG~~~~~~~~g-~e~~~~~~GD~v------~~p~---g~~~~~~~~~~-~~k~y~~~~~~ 70 (74)
.||-|-.... ..|.+.|-+|.+.+..++| +.-.++++|+.| -|+. |.+.+..+..- .-.+|++++.|
T Consensus 336 SPgDyICrKGdvgkEMyIVk~G~L~Vv~dDg~t~~~~L~~G~~FGEisIlni~g~~~gNRRtanvrSvGYSDlfvLskdD 415 (536)
T KOG0500|consen 336 SPGDYICRKGDVGKEMYIVKEGKLAVVADDGVTVFVTLKAGSVFGEISILNIKGNKNGNRRTANVRSVGYSDLFVLSKDD 415 (536)
T ss_pred CCCCeEEecCcccceEEEEEccEEEEEecCCcEEEEEecCCceeeeeEEEEEcCcccCCcceeeeeeeccceeeEeeHHH
Confidence 3565544333 5899999999999999887 344779999865 4555 78888887663 56777776643
No 141
>PF00829 Ribosomal_L21p: Ribosomal prokaryotic L21 protein; InterPro: IPR001787 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L21 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L21 is known to bind to the 23S rRNA in the presence of L20. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups: Bacterial L21. Marchantia polymorpha chloroplast L21. Cyanelle L21. Plant chloroplast L21 (nuclear-encoded). Bacterial L21 is a protein of about 100 amino-acid residues, the mature form of the spinach chloroplast L21 has 200 residues.; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XG0_V 2X9S_V 2XG2_V 3UZ1_2 2Y19_V 2WDL_V 3V23_V 2WRO_V 2WRL_V 2Y11_V ....
Probab=65.89 E-value=13 Score=22.05 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=14.1
Q ss_pred EEEEeCCCceEEEECCCcEEEEc
Q 037642 25 VKVYPKGSSDWVEFGAGDLVTIP 47 (74)
Q Consensus 25 ~~~~~~~g~e~~~~~~GD~v~~p 47 (74)
+.+.+.| ..+.+.+||.+.+|
T Consensus 3 AIi~~gg--kQykV~~gd~i~v~ 23 (96)
T PF00829_consen 3 AIIEIGG--KQYKVEEGDVIDVE 23 (96)
T ss_dssp EEEESSS--EEEEESSSEEEEEE
T ss_pred EEEEECC--EEEEEeCCCEEEEC
Confidence 3445544 46888888888875
No 142
>PHA00663 hypothetical protein
Probab=65.33 E-value=7.5 Score=21.65 Aligned_cols=21 Identities=24% Similarity=0.618 Sum_probs=18.6
Q ss_pred CCCcEEEEcCCCeEEEEEeee
Q 037642 39 GAGDLVTIPKGLSCTWDVSVA 59 (74)
Q Consensus 39 ~~GD~v~~p~g~~~~~~~~~~ 59 (74)
++||.|-+|.|.+.+|-+...
T Consensus 16 ~~gdvFdvpdg~kaSWfvpA~ 36 (68)
T PHA00663 16 EPGDKFDVPDGAKASWFAPAS 36 (68)
T ss_pred ccCceeecCCCCeeeeEeehh
Confidence 389999999999999998764
No 143
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=64.84 E-value=9.7 Score=24.20 Aligned_cols=42 Identities=14% Similarity=0.266 Sum_probs=26.6
Q ss_pred CceEEEEEEe----cEEEEEeCCCceEEEECCCcEEEEcCCCeEEEE
Q 037642 13 DAEETCYLLK----GKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWD 55 (74)
Q Consensus 13 ~~~E~~~vle----G~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~ 55 (74)
+..|++.++- |+..+.+=+. +--.++|||++.+-.|...-|+
T Consensus 34 dg~~v~~~kVaD~TgsI~isvW~e-~~~~~~PGDIirLt~Gy~Si~q 79 (134)
T KOG3416|consen 34 DGHEVRSCKVADETGSINISVWDE-EGCLIQPGDIIRLTGGYASIFQ 79 (134)
T ss_pred CCCEEEEEEEecccceEEEEEecC-cCcccCCccEEEecccchhhhc
Confidence 3445554442 4444554332 3357999999999988877665
No 144
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=64.06 E-value=5.6 Score=25.31 Aligned_cols=15 Identities=40% Similarity=0.714 Sum_probs=13.2
Q ss_pred EEEECCCcEEEEcCC
Q 037642 35 WVEFGAGDLVTIPKG 49 (74)
Q Consensus 35 ~~~~~~GD~v~~p~g 49 (74)
.+.|+|||.+++|+.
T Consensus 149 n~~L~~gD~I~Vp~~ 163 (165)
T TIGR03027 149 NVELKPGDVLIIPES 163 (165)
T ss_pred CceeCCCCEEEEecc
Confidence 478999999999975
No 145
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=63.96 E-value=3.1 Score=33.57 Aligned_cols=21 Identities=29% Similarity=0.158 Sum_probs=16.4
Q ss_pred EEEECCCcEEEEcCCCeEEEE
Q 037642 35 WVEFGAGDLVTIPKGLSCTWD 55 (74)
Q Consensus 35 ~~~~~~GD~v~~p~g~~~~~~ 55 (74)
++.=..||+|+||+|.+|+-.
T Consensus 800 tfvQ~LGdAVfIPAGaPHQVr 820 (889)
T KOG1356|consen 800 TFVQFLGDAVFIPAGAPHQVR 820 (889)
T ss_pred chhhcccceEEecCCCcHHhh
Confidence 344456999999999998754
No 146
>PRK15078 polysaccharide export protein Wza; Provisional
Probab=62.42 E-value=9.7 Score=27.72 Aligned_cols=29 Identities=21% Similarity=0.145 Sum_probs=23.2
Q ss_pred eEEEECCCcEEEEcCCCeEEEEEeeeEEE
Q 037642 34 DWVEFGAGDLVTIPKGLSCTWDVSVAVDK 62 (74)
Q Consensus 34 e~~~~~~GD~v~~p~g~~~~~~~~~~~~k 62 (74)
+.+.+++||.+++|........+.+.+.+
T Consensus 237 ~ni~L~~GDvI~Vp~~~~~~v~V~GeV~~ 265 (379)
T PRK15078 237 QNRLLYPGDILYVPRNDDLKVFVMGEVKK 265 (379)
T ss_pred cCceeCCCCEEEECCCCCcEEEEeeeccc
Confidence 34779999999999987777777777654
No 147
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=62.23 E-value=15 Score=19.46 Aligned_cols=30 Identities=13% Similarity=0.198 Sum_probs=18.1
Q ss_pred ceEEEEEEecEEEEEeCCCceEEEECCCcEEEE
Q 037642 14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTI 46 (74)
Q Consensus 14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~ 46 (74)
...+.-|.+|.. +....+ ...+++||.+++
T Consensus 27 ~~~i~~i~R~~~-~~~p~~--~~~l~~gD~l~v 56 (71)
T PF02080_consen 27 GVRIVAIKRGGE-IIIPDG--DTVLQAGDILIV 56 (71)
T ss_dssp TEEEEEEEETEE-EES--T--T-BE-TTEEEEE
T ss_pred CEEEEEEEECCE-EECCCC--CCEECCCCEEEE
Confidence 345677788844 444443 379999999987
No 148
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=61.21 E-value=43 Score=21.84 Aligned_cols=64 Identities=11% Similarity=0.058 Sum_probs=38.2
Q ss_pred CCceEEEec--CceEEEEEEecEEEEEe--CCCceE--EEECCCcEEEEc-----CCCeEEEEEeeeEEEEEEEec
Q 037642 4 SPGKFQLKF--DAEETCYLLKGKVKVYP--KGSSDW--VEFGAGDLVTIP-----KGLSCTWDVSVAVDKYYKFES 68 (74)
Q Consensus 4 ~pg~~~~~~--~~~E~~~vleG~~~~~~--~~g~e~--~~~~~GD~v~~p-----~g~~~~~~~~~~~~k~y~~~~ 68 (74)
++|..-+.. ..+.+++|++|.+.+.. ++|.+. ..+.|||++-.. .....+..+.+++ .++.+..
T Consensus 37 ~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A~~~~-~i~~i~~ 111 (226)
T PRK10402 37 LAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQAIEEC-WCLALPM 111 (226)
T ss_pred CCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEEeccE-EEEEEEH
Confidence 345444433 35789999999998864 444332 347899988642 2234455566665 4555543
No 149
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=59.04 E-value=7.3 Score=28.22 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=16.6
Q ss_pred EEEECCCcEEEEcCCCeEEEEE
Q 037642 35 WVEFGAGDLVTIPKGLSCTWDV 56 (74)
Q Consensus 35 ~~~~~~GD~v~~p~g~~~~~~~ 56 (74)
.+.++||+++++|+|..|..--
T Consensus 251 ~v~L~pGeaifl~a~~~HAYl~ 272 (373)
T PF01238_consen 251 YVELQPGEAIFLPAGEPHAYLS 272 (373)
T ss_dssp EEEE-TT-EEEEHTTHHEEEEE
T ss_pred EEEecCCceEEecCCCcccccc
Confidence 4689999999999999988753
No 150
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=57.69 E-value=30 Score=22.13 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=18.4
Q ss_pred EEEecEEEEEeCCCceEEEECCCcEEEEcC
Q 037642 19 YLLKGKVKVYPKGSSDWVEFGAGDLVTIPK 48 (74)
Q Consensus 19 ~vleG~~~~~~~~g~e~~~~~~GD~v~~p~ 48 (74)
+=.+|.+++..++| ..+.|.|..-+++
T Consensus 72 FQ~dGkG~L~~~~g---~~~~pND~Y~L~~ 98 (137)
T PF12988_consen 72 FQPDGKGTLRMDDG---TVLLPNDRYPLEK 98 (137)
T ss_dssp E-SSS-EEEEETTS----EE-TTSEEE-S-
T ss_pred EeecCCEEEEecCC---cEeccccceecCc
Confidence 34589999999997 4889999999985
No 151
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=56.32 E-value=4.4 Score=25.53 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=20.9
Q ss_pred ecEEEEEeCCCceEEEECCCcEEEEcC
Q 037642 22 KGKVKVYPKGSSDWVEFGAGDLVTIPK 48 (74)
Q Consensus 22 eG~~~~~~~~g~e~~~~~~GD~v~~p~ 48 (74)
+|+..+.++|. .-..+++||.|+|=.
T Consensus 63 rGSg~I~lNGA-AArl~~~GD~VII~s 88 (126)
T COG0853 63 RGSGVICLNGA-AARLVQVGDLVIIMS 88 (126)
T ss_pred CCCcEEEechH-HHhhCCCCCEEEEEE
Confidence 35778899997 468899999998843
No 152
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=56.13 E-value=31 Score=21.03 Aligned_cols=24 Identities=8% Similarity=0.151 Sum_probs=17.7
Q ss_pred EEEEeCCCceEEEECCCcEEEEcCC
Q 037642 25 VKVYPKGSSDWVEFGAGDLVTIPKG 49 (74)
Q Consensus 25 ~~~~~~~g~e~~~~~~GD~v~~p~g 49 (74)
++++.++. ....+++||.+.|-..
T Consensus 20 iEiRlnD~-kr~~ikvGD~I~f~~~ 43 (109)
T cd06555 20 IEIRLNDE-KRQQIKVGDKILFNDL 43 (109)
T ss_pred EEEEeccc-chhcCCCCCEEEEEEc
Confidence 45566775 3468999999999654
No 153
>PRK05573 rplU 50S ribosomal protein L21; Validated
Probab=56.08 E-value=27 Score=20.96 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=16.1
Q ss_pred EEEEeCCCceEEEECCCcEEEEcC
Q 037642 25 VKVYPKGSSDWVEFGAGDLVTIPK 48 (74)
Q Consensus 25 ~~~~~~~g~e~~~~~~GD~v~~p~ 48 (74)
|.+.+.| ..+.+++||.+.++.
T Consensus 3 AIi~~gG--kQykV~~Gd~i~v~~ 24 (103)
T PRK05573 3 AIIKTGG--KQYKVEEGDVIKVEK 24 (103)
T ss_pred EEEEECC--EEEEEeCCCEEEEcc
Confidence 3455555 469999999998864
No 154
>PF02261 Asp_decarbox: Aspartate decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase. The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process; PDB: 1PYU_C 1AW8_A 1PYQ_B 3TM7_C 1PT1_A 1PQH_A 1PPY_B 1PT0_B 1PQF_A 1PQE_A ....
Probab=55.05 E-value=2.6 Score=26.26 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=19.9
Q ss_pred EEEEEecE---EEEEeCCCceEEEECCCcEEEEc
Q 037642 17 TCYLLKGK---VKVYPKGSSDWVEFGAGDLVTIP 47 (74)
Q Consensus 17 ~~~vleG~---~~~~~~~g~e~~~~~~GD~v~~p 47 (74)
.-|++.|. ..+.++|. .-..+++||.++|=
T Consensus 56 ~TYvI~g~~GSg~I~lNGa-AArl~~~GD~vII~ 88 (116)
T PF02261_consen 56 ETYVIPGERGSGVICLNGA-AARLVQVGDRVIIM 88 (116)
T ss_dssp EEEEEEESTTTT-EEEEGG-GGGCS-TT-EEEEE
T ss_pred EEEEEEccCCCcEEEECCH-HHhccCCCCEEEEE
Confidence 34666665 58888887 45889999999884
No 155
>TIGR03021 pilP_fam type IV pilus biogenesis protein PilP. Members of this protein family are found in type IV pilus biogenesis loci and include proteins designated PilP.
Probab=54.96 E-value=48 Score=20.41 Aligned_cols=29 Identities=21% Similarity=0.270 Sum_probs=22.2
Q ss_pred EEEEEeCCCceEEEECCCcEEEEcC-CCeEEEE
Q 037642 24 KVKVYPKGSSDWVEFGAGDLVTIPK-GLSCTWD 55 (74)
Q Consensus 24 ~~~~~~~~g~e~~~~~~GD~v~~p~-g~~~~~~ 55 (74)
.+++...+| ...++++||. ||. |++..--
T Consensus 82 ~A~l~l~~G-~~~~v~~G~~--lpgt~~~V~~I 111 (119)
T TIGR03021 82 TATLRLPGG-REVDVQVGDS--LPGTGYKVKSI 111 (119)
T ss_pred EEEEEeCCC-cEEEecCCCc--cCCCCcEEEEE
Confidence 578888887 4799999998 777 6665443
No 156
>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by Pfam model pfam00877 and by Anantharaman and Aravind (PubMed:12620121). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes.
Probab=54.67 E-value=7.2 Score=24.09 Aligned_cols=11 Identities=18% Similarity=0.365 Sum_probs=9.8
Q ss_pred EECCCcEEEEc
Q 037642 37 EFGAGDLVTIP 47 (74)
Q Consensus 37 ~~~~GD~v~~p 47 (74)
.++|||+|+|.
T Consensus 76 ~~qpGDlvff~ 86 (134)
T TIGR02219 76 AAQPGDVLVFR 86 (134)
T ss_pred cCCCCCEEEEe
Confidence 58999999995
No 157
>COG5583 Uncharacterized small protein [Function unknown]
Probab=54.66 E-value=22 Score=19.18 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=20.8
Q ss_pred cEEEEEeCCCceEEEECCCcEEEEcCCC
Q 037642 23 GKVKVYPKGSSDWVEFGAGDLVTIPKGL 50 (74)
Q Consensus 23 G~~~~~~~~g~e~~~~~~GD~v~~p~g~ 50 (74)
|++++++.+| ..+.+.+-+-+.||.+.
T Consensus 24 GsV~ItVhdg-qViQIE~~EK~Rl~q~~ 50 (54)
T COG5583 24 GSVTITVHDG-QVIQIEASEKVRLRQNK 50 (54)
T ss_pred ceEEEEEECC-EEEEEehhhheeccccc
Confidence 7888888887 57888888877776543
No 158
>cd06552 ASCH_yqfb_like ASC-1 homology domain, subfamily similar to Escherichia coli Yqfb. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=54.22 E-value=33 Score=19.63 Aligned_cols=31 Identities=23% Similarity=0.332 Sum_probs=23.0
Q ss_pred EEEecEEEEEeCCCceEEEECCCcEEEEcCCC
Q 037642 19 YLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGL 50 (74)
Q Consensus 19 ~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~ 50 (74)
.|++|.=++++.... ...+++||.+++-.+.
T Consensus 11 ~I~sG~Kt~t~R~~~-~~~~~~Gd~~~~~~~~ 41 (100)
T cd06552 11 AILSGKKTATIRDGG-ESHLKPGDVVEVHTGE 41 (100)
T ss_pred HHHcCCCEEEEeCCC-ccCCCCCCEEEEEECC
Confidence 367888777777642 3569999999998775
No 159
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=53.72 E-value=24 Score=25.97 Aligned_cols=24 Identities=13% Similarity=0.014 Sum_probs=19.2
Q ss_pred EEECCCcEEEEcCCCeEEEEEeee
Q 037642 36 VEFGAGDLVTIPKGLSCTWDVSVA 59 (74)
Q Consensus 36 ~~~~~GD~v~~p~g~~~~~~~~~~ 59 (74)
...+||+++++|.|+.|.---.++
T Consensus 265 c~q~pGEt~fVP~GWWHvVlNle~ 288 (407)
T KOG2130|consen 265 CLQKPGETMFVPSGWWHVVLNLEP 288 (407)
T ss_pred eeecCCceEEecCCeEEEEeccCc
Confidence 568999999999999886654444
No 160
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=53.45 E-value=7.8 Score=25.79 Aligned_cols=14 Identities=36% Similarity=0.582 Sum_probs=11.5
Q ss_pred EECCCcEEEEcCCC
Q 037642 37 EFGAGDLVTIPKGL 50 (74)
Q Consensus 37 ~~~~GD~v~~p~g~ 50 (74)
.++|||+++|..+.
T Consensus 128 ~lqpGDLVfF~~~~ 141 (190)
T PRK10838 128 KLRTGDLVLFRAGS 141 (190)
T ss_pred CCCCCcEEEECCCC
Confidence 57999999998553
No 161
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=52.65 E-value=52 Score=20.09 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=25.7
Q ss_pred CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEc
Q 037642 13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIP 47 (74)
Q Consensus 13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p 47 (74)
..-|.+++..-..++.+.+....+.+++|+.+.+-
T Consensus 57 ~r~e~~l~~~~~~~v~i~~~~~~i~~~~GE~I~~e 91 (127)
T PF10017_consen 57 GRHEMYLVAKRDQTVRIGGLDLTIHFKEGERIHTE 91 (127)
T ss_pred CEEEEEEEeCCcEEEEEcCCCceeEECCCCEEEEE
Confidence 35788888888888888743346788888888763
No 162
>PRK09774 fec operon regulator FecR; Reviewed
Probab=51.45 E-value=83 Score=22.10 Aligned_cols=34 Identities=12% Similarity=0.100 Sum_probs=25.4
Q ss_pred EEEEEEecEEEEEeCCC-ceEEEECCCcEEEEcCC
Q 037642 16 ETCYLLKGKVKVYPKGS-SDWVEFGAGDLVTIPKG 49 (74)
Q Consensus 16 E~~~vleG~~~~~~~~g-~e~~~~~~GD~v~~p~g 49 (74)
--+-|++|.+.+...+. .....+.||+.+.+..+
T Consensus 193 ~~V~V~eG~V~v~~~~~~~~~~~L~~Gq~~~~~~~ 227 (319)
T PRK09774 193 TQLAVQQHAVEVLLASAPAQKRIVNAGESLQFSAS 227 (319)
T ss_pred ceEEEEEEEEEEEECCCCCcceEECCCcEEEEcCC
Confidence 34678999999987542 12467999999999765
No 163
>TIGR02480 fliN flagellar motor switch protein FliN. Proteins that consist largely of the domain described by this model can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica.
Probab=50.61 E-value=15 Score=20.55 Aligned_cols=30 Identities=17% Similarity=0.378 Sum_probs=20.6
Q ss_pred cEEEEEeCCCceEEEECCCcEEEEcCCCeEEEE
Q 037642 23 GKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWD 55 (74)
Q Consensus 23 G~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~ 55 (74)
|+..+++.+ -..+++||++.+........+
T Consensus 17 g~~~itl~e---ll~L~~Gdvi~L~~~~~~~v~ 46 (77)
T TIGR02480 17 GRTRITLGD---LLKLGEGSVIELDKLAGEPLD 46 (77)
T ss_pred eceEeEHHH---HhcCCCCCEEEcCCCCCCcEE
Confidence 666677666 368999999999754443333
No 164
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
Probab=50.47 E-value=25 Score=21.19 Aligned_cols=25 Identities=16% Similarity=0.033 Sum_probs=19.6
Q ss_pred eEEEECCCcEEEEcCCCeEEEEEee
Q 037642 34 DWVEFGAGDLVTIPKGLSCTWDVSV 58 (74)
Q Consensus 34 e~~~~~~GD~v~~p~g~~~~~~~~~ 58 (74)
.+..++.||.++|.+..-.+.+..+
T Consensus 55 ~~~~VkvGD~Vlf~ky~G~evk~dg 79 (96)
T COG0234 55 VPLDVKVGDRVLFGKYAGTEVKIDG 79 (96)
T ss_pred eccccccCCEEEECccCCcEEEECC
Confidence 3567999999999998886666544
No 165
>COG0186 RpsQ Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]
Probab=50.38 E-value=40 Score=19.93 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=24.5
Q ss_pred EEeCCCceEEEECCCcEEEE----cCCCeEEEEEeeeEE
Q 037642 27 VYPKGSSDWVEFGAGDLVTI----PKGLSCTWDVSVAVD 61 (74)
Q Consensus 27 ~~~~~g~e~~~~~~GD~v~~----p~g~~~~~~~~~~~~ 61 (74)
+...+ +...++.||+|.| |=.-+-.|.+.+-+.
T Consensus 47 ~~aHd--e~~~~k~GD~V~I~EtRPLSKtK~~~vv~i~~ 83 (87)
T COG0186 47 YHAHD--ECNEAKVGDIVRIAETRPLSKTKRFVVVEIVE 83 (87)
T ss_pred eEeec--ccccCCCCCEEEEEEccccCCcceEEEEEEee
Confidence 34445 2478999999999 777778888877654
No 166
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=50.14 E-value=20 Score=24.19 Aligned_cols=26 Identities=12% Similarity=0.272 Sum_probs=19.1
Q ss_pred EEEECCCcEEEEcCCCeEEEEEeeeEEE
Q 037642 35 WVEFGAGDLVTIPKGLSCTWDVSVAVDK 62 (74)
Q Consensus 35 ~~~~~~GD~v~~p~g~~~~~~~~~~~~k 62 (74)
.+.+++||.+++|+... ..+.+.+++
T Consensus 148 ni~L~~GD~I~V~~~~~--v~v~G~V~~ 173 (239)
T TIGR03028 148 NILVAGGDIIYVDRAPV--FYIYGEVQR 173 (239)
T ss_pred CcEEcCCCEEEEcCCcc--EEEEeEccC
Confidence 48999999999998753 345555543
No 167
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=50.05 E-value=71 Score=20.95 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=33.1
Q ss_pred ceEEEEEEecEEEEEe--CCCceE--EEECCCcEEEEcCCC--eEEEEEeeeEEEEEEEe
Q 037642 14 AEETCYLLKGKVKVYP--KGSSDW--VEFGAGDLVTIPKGL--SCTWDVSVAVDKYYKFE 67 (74)
Q Consensus 14 ~~E~~~vleG~~~~~~--~~g~e~--~~~~~GD~v~~p~g~--~~~~~~~~~~~k~y~~~ 67 (74)
...+++|++|.+.+.. ++|++. ..+.+||++-+..+. ..+..+.+++ .+|.+.
T Consensus 56 ~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds-~v~~i~ 114 (230)
T PRK09391 56 ADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGSTHRFTAEAIVDT-TVRLIK 114 (230)
T ss_pred CCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCcCCeEEEEcCce-EEEEEE
Confidence 5789999999998874 344332 235899998765543 2344455554 344443
No 168
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=49.74 E-value=23 Score=25.84 Aligned_cols=38 Identities=26% Similarity=0.305 Sum_probs=29.1
Q ss_pred ecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeE
Q 037642 22 KGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAV 60 (74)
Q Consensus 22 eG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~ 60 (74)
||.+++..-+.+ ..-+++||.|+.-+--.++|+...-+
T Consensus 84 EGv~eVv~vGs~-vkgfk~Gd~VIp~~a~lGtW~t~~v~ 121 (354)
T KOG0025|consen 84 EGVGEVVAVGSN-VKGFKPGDWVIPLSANLGTWRTEAVF 121 (354)
T ss_pred cceEEEEEecCC-cCccCCCCeEeecCCCCccceeeEee
Confidence 677888777753 44499999999888888999876543
No 169
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=49.22 E-value=68 Score=24.49 Aligned_cols=55 Identities=15% Similarity=0.066 Sum_probs=36.2
Q ss_pred EEEEecEEEEEeCCCceEEEECCCcEEEEcCCCe--EEEEEeee-----EEEEEE-EecCCCC
Q 037642 18 CYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLS--CTWDVSVA-----VDKYYK-FESTSSS 72 (74)
Q Consensus 18 ~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~--~~~~~~~~-----~~k~y~-~~~~~~~ 72 (74)
+.|-+=+|-+.+-+.+-...++||++++|..+-. .+.++.++ +..-|+ +.+|||-
T Consensus 197 yvvaSEt~Ald~iGa~~vRdv~pGE~v~i~~~~~g~~s~~~~~~~~~~~C~fEyVYFARPDS~ 259 (470)
T COG0034 197 YVVASETCALDILGAEFVRDVEPGEAVIITIDGDGLESKQVAEPPRRAPCSFEYVYFARPDSV 259 (470)
T ss_pred EEEEechhhhhcccceEEEecCCceEEEEEecCceeEEEeccCCCCCccceEEEEEeecCccc
Confidence 4455555666666665567899999999777664 44554443 455677 6778873
No 170
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=48.01 E-value=61 Score=25.71 Aligned_cols=41 Identities=15% Similarity=0.349 Sum_probs=26.8
Q ss_pred CCceEEEec--CceEEEEEEecEEEEEeCCC-ce--EEEECCCcEE
Q 037642 4 SPGKFQLKF--DAEETCYLLKGKVKVYPKGS-SD--WVEFGAGDLV 44 (74)
Q Consensus 4 ~pg~~~~~~--~~~E~~~vleG~~~~~~~~g-~e--~~~~~~GD~v 44 (74)
.||..-+.. ..+++++|++|.+.+....+ ++ ...+++||.|
T Consensus 403 ~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~F 448 (823)
T PLN03192 403 PPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIF 448 (823)
T ss_pred CCCCEEEECCCCCceEEEEEecEEEEEEecCCcceeeEEccCCCEe
Confidence 355433332 35789999999999875332 22 2358999987
No 171
>KOG4143 consensus Sigma receptor and C-8 sterol isomerase [Signal transduction mechanisms]
Probab=47.07 E-value=16 Score=24.71 Aligned_cols=45 Identities=13% Similarity=0.233 Sum_probs=36.4
Q ss_pred ceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee
Q 037642 14 AEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV 58 (74)
Q Consensus 14 ~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~ 58 (74)
++..+-||+|...--.++..+..-+-|||..+.|+|...+.+...
T Consensus 120 AddyfTIl~Gtq~aa~~~~teaeVy~PG~thvh~~G~a~qysmp~ 164 (218)
T KOG4143|consen 120 ADDYFTILSGTQHAAREGTTEAEVYYPGETHVHGPGEATQYSMPP 164 (218)
T ss_pred hhhhhhhhccceecccCCCccceEEcCCcceecCCccceeeccCC
Confidence 466778999999888877766678999999999999887766543
No 172
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=45.77 E-value=1.3e+02 Score=22.81 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=26.1
Q ss_pred eEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCe
Q 037642 15 EETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLS 51 (74)
Q Consensus 15 ~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~ 51 (74)
.|-+.+-+=+|-+..-+.+-..++.||++|.|+++-.
T Consensus 201 ~~~~v~aSESc~f~~i~a~y~Rev~PGEiV~i~r~g~ 237 (474)
T KOG0572|consen 201 TEAWVVASESCAFLSIGARYEREVRPGEIVEISRNGV 237 (474)
T ss_pred cceEEEEecceeeeecccEEEEeecCceEEEEecCCc
Confidence 3455555666666666555568899999999988553
No 173
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=45.42 E-value=59 Score=20.04 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=33.8
Q ss_pred ceEEEEEEecEEEEEeCC--CceE--EEECCCcEEEEcC-----CCeEEEEEeeeEEEEEEEe
Q 037642 14 AEETCYLLKGKVKVYPKG--SSDW--VEFGAGDLVTIPK-----GLSCTWDVSVAVDKYYKFE 67 (74)
Q Consensus 14 ~~E~~~vleG~~~~~~~~--g~e~--~~~~~GD~v~~p~-----g~~~~~~~~~~~~k~y~~~ 67 (74)
.+-+++|++|.+.+.... |.+. ..+.|||.|-... -...+..+.++ -..+.+.
T Consensus 41 ~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~~~~~~~~~~a~~~-~~~~~~~ 102 (214)
T COG0664 41 ADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLGGDPRSASAVALTD-VEVLEIP 102 (214)
T ss_pred CceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhcCCCccceEEEcce-EEEEEec
Confidence 466999999999988643 3211 2377999986542 24556666666 3555543
No 174
>TIGR00061 L21 ribosomal protein L21. Eubacterial and chloroplast.
Probab=45.33 E-value=48 Score=19.88 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=19.2
Q ss_pred EEEEeCCCceEEEECCCcEEEEc-----CCCeEEEE
Q 037642 25 VKVYPKGSSDWVEFGAGDLVTIP-----KGLSCTWD 55 (74)
Q Consensus 25 ~~~~~~~g~e~~~~~~GD~v~~p-----~g~~~~~~ 55 (74)
|.+...| ..+.+++||.+.++ +|....++
T Consensus 2 AIi~~gG--kQykV~~Gd~i~Ve~l~~~~G~~i~l~ 35 (101)
T TIGR00061 2 AIVEIGG--KQYKVEEGQTVRIEKLDAAPGDTVEFD 35 (101)
T ss_pred EEEEECC--EEEEEeCCCEEEEcccCCCCCCEEEEE
Confidence 3455555 46899999999884 45555444
No 175
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=45.07 E-value=61 Score=21.64 Aligned_cols=16 Identities=13% Similarity=0.086 Sum_probs=13.0
Q ss_pred CCCcEEEEcCCCeEEE
Q 037642 39 GAGDLVTIPKGLSCTW 54 (74)
Q Consensus 39 ~~GD~v~~p~g~~~~~ 54 (74)
++||+++||.-..|.-
T Consensus 167 ~~G~lvlFPS~L~H~v 182 (201)
T TIGR02466 167 QEGRVLLFESWLRHEV 182 (201)
T ss_pred CCCeEEEECCCCceec
Confidence 6799999998877763
No 176
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=44.33 E-value=75 Score=22.18 Aligned_cols=47 Identities=13% Similarity=0.102 Sum_probs=37.5
Q ss_pred CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEE
Q 037642 13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVD 61 (74)
Q Consensus 13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~ 61 (74)
..+-+...+||++.++..| ..+.+++-.++.|.++..+...+.+.+.
T Consensus 226 ~v~~~~w~~e~s~vv~~~g--~~~~~~~~s~~~~~~~s~~~~~~~g~~a 272 (279)
T KOG3995|consen 226 NVDVWLWQLEGSSVVTMGG--RRLSLAPDSLLVLAGTSYAWERTQGSVA 272 (279)
T ss_pred ceEEEEEEecCceEEeecC--eEEeeCCcceEEEcCcchhhhhccCceE
Confidence 3577888999997777666 5799999999999998888777776653
No 177
>PF13550 Phage-tail_3: Putative phage tail protein
Probab=43.64 E-value=53 Score=19.95 Aligned_cols=32 Identities=16% Similarity=0.350 Sum_probs=19.8
Q ss_pred EEEEEeCCCceEEEECCCcEEEEcC-CCeEEEEEe
Q 037642 24 KVKVYPKGSSDWVEFGAGDLVTIPK-GLSCTWDVS 57 (74)
Q Consensus 24 ~~~~~~~~g~e~~~~~~GD~v~~p~-g~~~~~~~~ 57 (74)
.+.+...- +-..++|||+|.|+. +....|.+.
T Consensus 128 t~~f~~~~--~~~~l~pGDvi~l~~~~~~~~~RI~ 160 (164)
T PF13550_consen 128 TVSFTLPP--DGLALEPGDVIALSDDGRDMRFRIT 160 (164)
T ss_pred EEEEEECh--hhccCCCCCEEEEEeCCCceEEEEE
Confidence 34455444 237899999999864 344455443
No 178
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=43.55 E-value=90 Score=20.25 Aligned_cols=54 Identities=7% Similarity=0.000 Sum_probs=32.5
Q ss_pred CceEEEEEEecEEEEEe--CCCc-eEEEECCCcEEEE-----cCCCeEEEEEeeeEEEEEEEe
Q 037642 13 DAEETCYLLKGKVKVYP--KGSS-DWVEFGAGDLVTI-----PKGLSCTWDVSVAVDKYYKFE 67 (74)
Q Consensus 13 ~~~E~~~vleG~~~~~~--~~g~-e~~~~~~GD~v~~-----p~g~~~~~~~~~~~~k~y~~~ 67 (74)
..+.+++|++|.+.+.. +++. .-..+.+||++-. ..-...+....+++ .++.+.
T Consensus 47 ~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~A~~~~-~~~~i~ 108 (236)
T PRK09392 47 PADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAAVVLDAPYLMSARTLTRS-RVLMIP 108 (236)
T ss_pred ccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHHHhCCCCCceEEEEcCce-EEEEEe
Confidence 35889999999998864 2321 1134778887642 12244455556665 455544
No 179
>PF10983 DUF2793: Protein of unknown function (DUF2793); InterPro: IPR021251 This entry is represented by Bacteriophage D3112, Orf54. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=42.61 E-value=30 Score=20.26 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=20.5
Q ss_pred EECCCcEEEEcCCCeEEEEEeeeEEEE
Q 037642 37 EFGAGDLVTIPKGLSCTWDVSVAVDKY 63 (74)
Q Consensus 37 ~~~~GD~v~~p~g~~~~~~~~~~~~k~ 63 (74)
.-..||..++|++.++.|.-.+.-...
T Consensus 27 ~P~~Gd~yiv~~~atGaWaG~~g~iA~ 53 (87)
T PF10983_consen 27 SPAEGDRYIVPAGATGAWAGQDGKIAA 53 (87)
T ss_pred CCCCCCEEEECCCCCcccccCCCCEEE
Confidence 346799999999999888877654444
No 180
>PF03038 Herpes_UL95: UL95 family; InterPro: IPR004280 Members of this family are functionally uncharacterised proteins from herpesviruses.
Probab=42.60 E-value=30 Score=25.26 Aligned_cols=30 Identities=27% Similarity=0.286 Sum_probs=24.7
Q ss_pred EEEEecEEEEEeCC--CceEEEECCCcEEEEcC
Q 037642 18 CYLLKGKVKVYPKG--SSDWVEFGAGDLVTIPK 48 (74)
Q Consensus 18 ~~vleG~~~~~~~~--g~e~~~~~~GD~v~~p~ 48 (74)
+.||.|.+..++.. ++ .+..+.||+++||-
T Consensus 302 ~IIl~~~~~~~~vt~v~~-~~~p~tgd~~L~P~ 333 (348)
T PF03038_consen 302 CIILDCPAAQTIVTNVGS-HRCPGTGDTVLFPV 333 (348)
T ss_pred EEEeccccceeeehhhhe-eecCCCCceEEEec
Confidence 78899988877777 63 68889999999995
No 181
>cd04712 BAH_DCM_I BAH, or Bromo Adjacent Homology domain, as present in DNA (Cytosine-5)-methyltransferases (DCM) 1. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=41.89 E-value=63 Score=19.99 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=13.4
Q ss_pred EECCCcEEEEcCCCeEE
Q 037642 37 EFGAGDLVTIPKGLSCT 53 (74)
Q Consensus 37 ~~~~GD~v~~p~g~~~~ 53 (74)
.+.+||+|++++.....
T Consensus 5 ~i~vGD~V~v~~d~~~~ 21 (130)
T cd04712 5 TIRVGDVVSVERDDADS 21 (130)
T ss_pred EEeCCCEEEEcCCCCCc
Confidence 58889999998776543
No 182
>PF00877 NLPC_P60: NlpC/P60 family; InterPro: IPR000064 The Escherichia coli NLPC/Listeria P60 domain occurs at the C terminus of a number of different bacterial and viral proteins. The viral proteins are either described as tail assembly proteins or Gp19. In bacteria, the proteins are variously described as being putative tail component of prophage, invasin, invasion associated protein, putative lipoprotein, cell wall hydrolase, or putative endopeptidase. The E. coli NLPC/Listeria P60 domain is contained within the boundaries of the cysteine peptidase domain that defines the MEROPS peptidase family C40 (clan C-). A type example being dipeptidyl-peptidase VI from Bacillus sphaericus and gamma-glutamyl-diamino acid-endopeptidase precursor from Lactococcus lactis 3.4.19.11 from EC. This group also contains proteins classified as non-peptidase homologues in that they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the C40 family. ; PDB: 3PVQ_B 3GT2_A 3NPF_B 2K1G_A 3I86_A 3S0Q_A 2XIV_A 3PBC_A 3NE0_A 3M1U_B ....
Probab=41.45 E-value=17 Score=21.00 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=10.0
Q ss_pred EECCCcEEEEcC
Q 037642 37 EFGAGDLVTIPK 48 (74)
Q Consensus 37 ~~~~GD~v~~p~ 48 (74)
.++|||++++..
T Consensus 51 ~~~pGDlif~~~ 62 (105)
T PF00877_consen 51 ELQPGDLIFFKG 62 (105)
T ss_dssp G-TTTEEEEEEG
T ss_pred cCCcccEEEEeC
Confidence 589999999988
No 183
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=41.41 E-value=21 Score=23.61 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=12.0
Q ss_pred EEEEeCCCceEEEECCCcEE-EEcCCC
Q 037642 25 VKVYPKGSSDWVEFGAGDLV-TIPKGL 50 (74)
Q Consensus 25 ~~~~~~~g~e~~~~~~GD~v-~~p~g~ 50 (74)
+++.+.+. ...++|||.+ ++|.|.
T Consensus 31 ieldl~~~--~l~Y~pGD~l~V~P~N~ 55 (219)
T PF00667_consen 31 IELDLSDS--GLSYQPGDHLGVYPPND 55 (219)
T ss_dssp EEEE-TTS--TG---TT-EEEEE-SSE
T ss_pred EEEEeCCC--CCcccCCCEEEEEccCC
Confidence 45666664 3799999999 557764
No 184
>COG3712 FecR Fe2+-dicitrate sensor, membrane component [Inorganic ion transport and metabolism / Signal transduction mechanisms]
Probab=41.36 E-value=34 Score=24.76 Aligned_cols=39 Identities=33% Similarity=0.607 Sum_probs=28.8
Q ss_pred EEEe-cCceEEEEEEecEEEEEeCCCc--eEEEECCCcEEEEc
Q 037642 8 FQLK-FDAEETCYLLKGKVKVYPKGSS--DWVEFGAGDLVTIP 47 (74)
Q Consensus 8 ~~~~-~~~~E~~~vleG~~~~~~~~g~--e~~~~~~GD~v~~p 47 (74)
|... .+..-.+-|++|++.+...++. +.. +++|+.+.|-
T Consensus 187 F~Vr~~~~~t~V~v~eG~V~v~~~~~~~~~~v-l~aGq~~~~~ 228 (322)
T COG3712 187 FNVRREDGATRVTVLEGSVRVSPAGGRAAERV-LGAGQSVRFD 228 (322)
T ss_pred EEEEecCCcEEEEEEeeeEEEecCCCcccchh-cCCCeeEEec
Confidence 4433 3456677899999999998862 334 8999998776
No 185
>KOG1641 consensus Mitochondrial chaperonin [Posttranslational modification, protein turnover, chaperones]
Probab=41.07 E-value=82 Score=19.25 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=18.9
Q ss_pred EEEECCCcEEEEcCCCeEEEEEee
Q 037642 35 WVEFGAGDLVTIPKGLSCTWDVSV 58 (74)
Q Consensus 35 ~~~~~~GD~v~~p~g~~~~~~~~~ 58 (74)
+..+++||.|.+|+---...+...
T Consensus 64 ~~~Vk~Gd~VLlpeygGt~V~l~~ 87 (104)
T KOG1641|consen 64 PVSVKVGDRVLLPEYGGTKVKLGD 87 (104)
T ss_pred CccccCCCEEEeeccCCcEEeccC
Confidence 468999999999987766666553
No 186
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=40.85 E-value=66 Score=17.96 Aligned_cols=52 Identities=25% Similarity=0.323 Sum_probs=32.9
Q ss_pred EEEecCceEEEEEE----ecEEEEEeCCC-ceEEEECCCcEEEEc-CCCeEEEEEeee
Q 037642 8 FQLKFDAEETCYLL----KGKVKVYPKGS-SDWVEFGAGDLVTIP-KGLSCTWDVSVA 59 (74)
Q Consensus 8 ~~~~~~~~E~~~vl----eG~~~~~~~~g-~e~~~~~~GD~v~~p-~g~~~~~~~~~~ 59 (74)
+.+..+.+-+.+|+ +|.+++-..+. .....+.+|..+.|| ++....+++..+
T Consensus 11 ~~~~~~~~~Yl~l~~~~~~G~v~~L~Pn~~~~~~~v~ag~~~~iP~~~~~~~~~v~~P 68 (83)
T PF14326_consen 11 FRVTSNRDGYLYLFYIDADGKVTLLFPNRYQPDNFVKAGQTYTIPDPGDRFSFTVDPP 68 (83)
T ss_pred EEEEeCCCeEEEEEEECCCCCEEEEecCccccCceEcCCceEEcCCCCCceEEEEcCC
Confidence 33444455555554 46666555442 112568999999999 777777888776
No 187
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=40.78 E-value=31 Score=21.43 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=23.1
Q ss_pred EEECCCcEEEEcCCCeEE-----EEEeeeEEEEEEEecCCC
Q 037642 36 VEFGAGDLVTIPKGLSCT-----WDVSVAVDKYYKFESTSS 71 (74)
Q Consensus 36 ~~~~~GD~v~~p~g~~~~-----~~~~~~~~k~y~~~~~~~ 71 (74)
..++.||+++|=+...+. |.+-..---+|++...+.
T Consensus 41 ~~f~~GDlvLflpt~~~~~~~~~~~af~~~~~~YFL~~~s~ 81 (129)
T PF10377_consen 41 RNFQVGDLVLFLPTRNHNNKKQPWAAFNVGCPHYFLHEDSI 81 (129)
T ss_pred ecCCCCCEEEEEecCCCCccccceEEeeCCCceEEEecccc
Confidence 457899999763333333 776665556777766554
No 188
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=40.63 E-value=21 Score=19.03 Aligned_cols=14 Identities=36% Similarity=0.631 Sum_probs=10.7
Q ss_pred ECCCcEEEEcCCCe
Q 037642 38 FGAGDLVTIPKGLS 51 (74)
Q Consensus 38 ~~~GD~v~~p~g~~ 51 (74)
+++||+|.+..|-+
T Consensus 1 f~~GDvV~LKSGGp 14 (53)
T PF09926_consen 1 FKIGDVVQLKSGGP 14 (53)
T ss_pred CCCCCEEEEccCCC
Confidence 46899998877654
No 189
>PF09356 Phage_BR0599: Phage conserved hypothetical protein BR0599; InterPro: IPR018964 This entry describes the C-terminal region of a family of proteins found almost exclusively in phage or in prophage regions of bacterial genomes, including the phage-like Rhodobacter capsulatus (Rhodopseudomonas capsulata) gene transfer agent, which packages DNA. An apparent exception is Wolbachia pipientis wMel, a bacterial endosymbiont of the fruit fly, which has several candidate phage-related genes physically separate from obvious prophage regions.
Probab=40.48 E-value=13 Score=21.32 Aligned_cols=30 Identities=20% Similarity=0.078 Sum_probs=22.6
Q ss_pred EEEEeCCCceEEEECCCcEEEEcCCCeEEEE
Q 037642 25 VKVYPKGSSDWVEFGAGDLVTIPKGLSCTWD 55 (74)
Q Consensus 25 ~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~ 55 (74)
..|++... -...+.+||.|.+-+|..++++
T Consensus 29 ~~l~L~~p-~~~~~~~G~~v~l~~GCDkt~~ 58 (80)
T PF09356_consen 29 GTLTLWRP-LPAGLAVGDTVTLYPGCDKTFA 58 (80)
T ss_pred CEEEEecc-CcccCCCCCEEEEEeCCCCCHH
Confidence 45555554 2457999999999999998775
No 190
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=40.47 E-value=36 Score=19.70 Aligned_cols=22 Identities=14% Similarity=-0.058 Sum_probs=10.5
Q ss_pred EEcCCCeEEEEEeeeEEEEEEE
Q 037642 45 TIPKGLSCTWDVSVAVDKYYKF 66 (74)
Q Consensus 45 ~~p~g~~~~~~~~~~~~k~y~~ 66 (74)
.+++|.+.++....+-.-.|.|
T Consensus 63 ~~~pG~t~~~tF~~~G~y~y~C 84 (99)
T TIGR02656 63 LNSPGESYEVTFSTPGTYTFYC 84 (99)
T ss_pred ccCCCCEEEEEeCCCEEEEEEc
Confidence 3455555555555544334433
No 191
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=40.40 E-value=35 Score=20.83 Aligned_cols=12 Identities=33% Similarity=0.639 Sum_probs=8.5
Q ss_pred EEEECCCcEEEE
Q 037642 35 WVEFGAGDLVTI 46 (74)
Q Consensus 35 ~~~~~~GD~v~~ 46 (74)
.+++++||.|.+
T Consensus 16 ~v~V~~GdTV~f 27 (116)
T TIGR02375 16 YIRAAPGDTVTF 27 (116)
T ss_pred EEEECCCCEEEE
Confidence 367777777755
No 192
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.40 E-value=61 Score=19.91 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=17.4
Q ss_pred EEEEeCCCceEEEECCCcEEEEcCC
Q 037642 25 VKVYPKGSSDWVEFGAGDLVTIPKG 49 (74)
Q Consensus 25 ~~~~~~~g~e~~~~~~GD~v~~p~g 49 (74)
.++++.+. ....+++||.++|-.+
T Consensus 22 iEvRl~d~-krr~ik~GD~IiF~~~ 45 (111)
T COG4043 22 IEVRLADP-KRRQIKPGDKIIFNGD 45 (111)
T ss_pred EEEEecCH-hhcCCCCCCEEEEcCC
Confidence 34455665 3578999999999863
No 193
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=40.39 E-value=57 Score=22.34 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=24.0
Q ss_pred cEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEe
Q 037642 23 GKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVS 57 (74)
Q Consensus 23 G~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~ 57 (74)
|+..+...=|+..+.+-+||+|.+|.-..|.-.-+
T Consensus 133 GeLVv~dtYg~h~VklPAGdLVlypStSlH~VtPV 167 (229)
T COG3128 133 GELVVNDTYGNHRVKLPAGDLVLYPSTSLHEVTPV 167 (229)
T ss_pred ceEEEeccccceEEeccCCCEEEcccccceecccc
Confidence 44444444444567888999999998887765533
No 194
>PHA00672 hypothetical protein
Probab=39.59 E-value=1e+02 Score=19.77 Aligned_cols=43 Identities=16% Similarity=0.260 Sum_probs=34.3
Q ss_pred eEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee
Q 037642 15 EETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA 59 (74)
Q Consensus 15 ~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~ 59 (74)
.+-++|++|..++..+++ ..++..=-++.=|+|.+...-.++.
T Consensus 67 f~~~ii~sG~itV~tdge--~~rl~g~~~i~~~aG~KragyAHeD 109 (152)
T PHA00672 67 VSTVLIFSGHATVFIGGE--AVELRGYHVIPASAGRKQAFVAHAD 109 (152)
T ss_pred eeEEEEecccEEEEeCCc--EEEEecceeeecCCCcccceeeecc
Confidence 344599999999999974 6888888888889998877766665
No 195
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
Probab=38.82 E-value=87 Score=18.72 Aligned_cols=42 Identities=19% Similarity=0.037 Sum_probs=32.6
Q ss_pred EEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee
Q 037642 16 ETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA 59 (74)
Q Consensus 16 E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~ 59 (74)
=...+..|.+++..+.|.....+..++. +..|..|+-.+.-.
T Consensus 22 ial~L~~G~l~~~~~~G~~~~~~~~~~~--i~dg~wh~v~~~r~ 63 (131)
T PF00054_consen 22 IALELRDGRLEFRYNLGSGPASLRSPQK--INDGKWHTVSVSRN 63 (131)
T ss_dssp EEEEEETTEEEEEEESSSEEEEEEESSE--TTSSSEEEEEEEEE
T ss_pred EEEEEECCEEEEEEeCCCccceecCCCc--cCCCcceEEEEEEc
Confidence 4677889999999887765677888886 88888887776544
No 196
>KOG1686 consensus Mitochondrial/chloroplast ribosomal L21 protein [Translation, ribosomal structure and biogenesis]
Probab=37.59 E-value=94 Score=20.16 Aligned_cols=43 Identities=14% Similarity=-0.024 Sum_probs=29.9
Q ss_pred ecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEE
Q 037642 22 KGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKF 66 (74)
Q Consensus 22 eG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~ 66 (74)
+|-+.+.+.+ ..+.+..||.++.|..-+..-.-.=+.-|+-+.
T Consensus 25 ~~favv~v~s--rq~kvs~gd~iy~eg~~p~nv~d~i~l~kVlLv 67 (151)
T KOG1686|consen 25 SGFAVVSVGS--RQRKVSSGDTIYTEGLKPKNVLDSIPLPKVLLV 67 (151)
T ss_pred CccEEEEEcc--eeEEecCCCeeeecCccccccccccccceEEEe
Confidence 5677777777 469999999999987766654444444455444
No 197
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=37.47 E-value=35 Score=19.94 Aligned_cols=29 Identities=21% Similarity=0.089 Sum_probs=17.1
Q ss_pred EEecEEEEEeCCCceEEEECCCcEE-EEcCC
Q 037642 20 LLKGKVKVYPKGSSDWVEFGAGDLV-TIPKG 49 (74)
Q Consensus 20 vleG~~~~~~~~g~e~~~~~~GD~v-~~p~g 49 (74)
|+=....++..++ ....+++||.+ +||+=
T Consensus 62 VlvN~~di~~l~g-~~t~L~dgD~v~i~P~v 91 (94)
T cd01764 62 VLINDTDWELLGE-EDYILEDGDHVVFISTL 91 (94)
T ss_pred EEECCccccccCC-cccCCCCcCEEEEECCC
Confidence 3333333444444 45789999988 55653
No 198
>COG1935 Uncharacterized conserved protein [Function unknown]
Probab=37.03 E-value=20 Score=22.40 Aligned_cols=11 Identities=36% Similarity=0.670 Sum_probs=9.8
Q ss_pred EEECCCcEEEE
Q 037642 36 VEFGAGDLVTI 46 (74)
Q Consensus 36 ~~~~~GD~v~~ 46 (74)
..++|||+|++
T Consensus 37 ~rl~~GDlVFl 47 (122)
T COG1935 37 LRLHEGDLVFL 47 (122)
T ss_pred hcCCCCCEEEE
Confidence 56899999998
No 199
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=36.75 E-value=18 Score=23.52 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=12.8
Q ss_pred EECCCcEEEEcCCCeE
Q 037642 37 EFGAGDLVTIPKGLSC 52 (74)
Q Consensus 37 ~~~~GD~v~~p~g~~~ 52 (74)
.+.|||++.+.+|...
T Consensus 51 ~L~~GDiI~l~~g~~v 66 (230)
T PF00122_consen 51 ELVPGDIIILKAGDIV 66 (230)
T ss_dssp GT-TTSEEEEETTEBE
T ss_pred hccceeeeeccccccc
Confidence 5899999999999854
No 200
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=36.70 E-value=1.1e+02 Score=23.41 Aligned_cols=40 Identities=18% Similarity=0.076 Sum_probs=32.2
Q ss_pred EEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee
Q 037642 18 CYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV 58 (74)
Q Consensus 18 ~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~ 58 (74)
.|-+.|..++....- +.-.++.||.+.+-|...+.|....
T Consensus 356 iYsVtGVGtVvsGsV-~~G~l~~gd~vllGP~~~G~fr~v~ 395 (527)
T COG5258 356 IYSVTGVGTVVSGSV-KSGILHVGDTVLLGPFKDGKFREVV 395 (527)
T ss_pred eEEEeeeEEEEeeeE-EeeeeccCCEEEEccCCCCcEEEEE
Confidence 455778888877665 5678999999999999999998554
No 201
>smart00797 AHS2 Allophanate hydrolase subunit 2. This domain represents subunit 2 of allophanate hydrolase (AHS2).
Probab=36.20 E-value=1.5e+02 Score=20.79 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=29.8
Q ss_pred EEecCceEEEEEEecEEEEEeCCCc----eEEEECCCcEEEEc---CCCeEEEEEeeeE
Q 037642 9 QLKFDAEETCYLLKGKVKVYPKGSS----DWVEFGAGDLVTIP---KGLSCTWDVSVAV 60 (74)
Q Consensus 9 ~~~~~~~E~~~vleG~~~~~~~~g~----e~~~~~~GD~v~~p---~g~~~~~~~~~~~ 60 (74)
.+.+..+-++-|.-+.+.+.+++.. ..+.+++||.+-|. .|.....-+.+.+
T Consensus 39 ~l~f~~~~~iAitGA~~~~~ln~~~~~~~~~~~v~~Gd~L~~g~~~~G~R~YLAv~GG~ 97 (280)
T smart00797 39 TLRFTADAVIALTGADFPATLDGQPVPPWKPFLVRAGQVLSLGAPKAGARAYLAVAGGI 97 (280)
T ss_pred EEEECCCcEEEEeCCCCeeeECCEEcCCCeEEEECCCCEEEeCCCCCccEEEEEEeccc
Confidence 3334444444344447788887631 23778888888874 4555555555544
No 202
>PF10949 DUF2777: Protein of unknown function (DUF2777); InterPro: IPR024488 This family of proteins with unknown function appears to be restricted to Bacillaceae.
Probab=35.99 E-value=1.3e+02 Score=20.08 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=19.0
Q ss_pred cEEEEEeCCCceEEEECCCcEEEEcCCC
Q 037642 23 GKVKVYPKGSSDWVEFGAGDLVTIPKGL 50 (74)
Q Consensus 23 G~~~~~~~~g~e~~~~~~GD~v~~p~g~ 50 (74)
+...+..++ +.+.++-||.+.|++-.
T Consensus 64 ~~~~v~~~~--e~~~L~~ge~IRi~K~l 89 (185)
T PF10949_consen 64 DQGIVSIDG--EQIPLSNGESIRIRKKL 89 (185)
T ss_pred cCceEEeCC--eEEecCCCCEEEEeecc
Confidence 666666666 47889999998887643
No 203
>PF15428 Imm14: Immunity protein 14
Probab=35.76 E-value=23 Score=21.39 Aligned_cols=11 Identities=36% Similarity=0.682 Sum_probs=9.0
Q ss_pred CCCcEEEEcCC
Q 037642 39 GAGDLVTIPKG 49 (74)
Q Consensus 39 ~~GD~v~~p~g 49 (74)
++||+|.||-.
T Consensus 1 K~GDIF~ipL~ 11 (129)
T PF15428_consen 1 KPGDIFCIPLD 11 (129)
T ss_pred CCceEEEEEcC
Confidence 68999999843
No 204
>PF01987 AIM24: Mitochondrial biogenesis AIM24; InterPro: IPR002838 The proteins in this family have no known function.; PDB: 1PG6_A 1YOX_D.
Probab=35.25 E-value=78 Score=20.60 Aligned_cols=44 Identities=18% Similarity=0.343 Sum_probs=28.1
Q ss_pred EEEEEEecEEEEEeC--CCceEEEECCCcEEEEcCCCeEEEEEeee
Q 037642 16 ETCYLLKGKVKVYPK--GSSDWVEFGAGDLVTIPKGLSCTWDVSVA 59 (74)
Q Consensus 16 E~~~vleG~~~~~~~--~g~e~~~~~~GD~v~~p~g~~~~~~~~~~ 59 (74)
-+..-++|++.+-+. +.=..+.+.||+-+++.++.-..|+-.-.
T Consensus 131 ~~~~~l~G~G~v~l~~~G~i~~i~L~~ge~~~Vd~~~lVA~~~~~~ 176 (215)
T PF01987_consen 131 LFMLKLSGRGTVFLSGYGAIYEIDLAPGEEIIVDPGHLVAWSGSLQ 176 (215)
T ss_dssp EEEEEEESSCEEEEEECCSEEEEEEE-EEEEEEEGGGEEEEETTCE
T ss_pred cEEEEEEEEEEEEEEeCCcEEEEEccCCceEEEcCCCEEEECCCcc
Confidence 344556666666554 33234678889999998888888875433
No 205
>PF05257 CHAP: CHAP domain; InterPro: IPR007921 The CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain is a region between 110 and 140 amino acids that is found in proteins from bacteria, bacteriophages, archaea and eukaryotes of the Trypanosomidae family. Many of these proteins are uncharacterised, but it has been proposed that they may function mainly in peptidoglycan hydrolysis. The CHAP domain is found in a wide range of protein architectures; it is commonly associated with bacterial type SH3 domains and with several families of amidase domains. It has been suggested that CHAP domain containing proteins utilise a catalytic cysteine residue in a nucleophilic-attack mechanism [, ]. The CHAP domain contains two invariant residues, a cysteine and a histidine. These residues form part of the putative active site of CHAP domain containing proteins. Secondary structure predictions show that the CHAP domain belongs to the alpha + beta structural class, with the N-terminal half largely containing predicted alpha helices and the C-terminal half principally composed of predicted beta strands [, ]. Some proteins known to contain a CHAP domain are listed below: Bacterial and trypanosomal glutathionylspermidine amidases. A variety of bacterial autolysins. A Nocardia aerocolonigenes putative esterase. Streptococcus pneumoniae choline-binding protein D. Methanosarcina mazei protein MM2478, a putative chloride channel. Several phage-encoded peptidoglycan hydrolases. Cysteine peptidases belonging to MEROPS peptidase family C51 (D-alanyl-glycyl endopeptidase, clan CA). ; PDB: 2LRJ_A 2VPM_B 2VOB_B 2VPS_A 2K3A_A 2IO9_A 2IO8_A 2IOB_A 2IOA_B 2IO7_B ....
Probab=35.20 E-value=98 Score=18.26 Aligned_cols=33 Identities=18% Similarity=0.102 Sum_probs=16.1
Q ss_pred EEECCCcEEEE---cCCCeEEEEEeeeE---EEEEEEec
Q 037642 36 VEFGAGDLVTI---PKGLSCTWDVSVAV---DKYYKFES 68 (74)
Q Consensus 36 ~~~~~GD~v~~---p~g~~~~~~~~~~~---~k~y~~~~ 68 (74)
...+|||++++ +.+.-+---+.+.+ .++.++..
T Consensus 61 ~~P~~Gdivv~~~~~~~~~GHVaIV~~v~~~~~i~v~e~ 99 (124)
T PF05257_consen 61 STPQPGDIVVWDSGSGGGYGHVAIVESVNDGGTITVIEQ 99 (124)
T ss_dssp S---TTEEEEEEECTTTTT-EEEEEEEE-TTSEEEEEEC
T ss_pred cccccceEEEeccCCCCCCCeEEEEEEECCCCEEEEEEC
Confidence 56789999999 44433333333333 45555443
No 206
>COG0756 Dut dUTPase [Nucleotide transport and metabolism]
Probab=35.02 E-value=43 Score=21.64 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=24.3
Q ss_pred EEEEecEEEEEeCCCceE-EEECCCcEEEEcCCCeE
Q 037642 18 CYLLKGKVKVYPKGSSDW-VEFGAGDLVTIPKGLSC 52 (74)
Q Consensus 18 ~~vleG~~~~~~~~g~e~-~~~~~GD~v~~p~g~~~ 52 (74)
.|-.+|++-+.+... +. ..+.||+..++|-|...
T Consensus 20 ~y~t~gsAG~DLrA~-~~~~~i~pg~~~LVpTGl~~ 54 (148)
T COG0756 20 KYATEGSAGYDLRAA-EDEVTIAPGERKLVPTGLAI 54 (148)
T ss_pred eeecCCccceeeecc-cceeEECCCCeEEecCCEEE
Confidence 356678777777665 44 68888888888877543
No 207
>CHL00075 rpl21 ribosomal protein L21
Probab=34.96 E-value=77 Score=19.28 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=13.8
Q ss_pred EEEeCCCceEEEECCCcEEEEc
Q 037642 26 KVYPKGSSDWVEFGAGDLVTIP 47 (74)
Q Consensus 26 ~~~~~~g~e~~~~~~GD~v~~p 47 (74)
.+...| ..+.+++||.+.++
T Consensus 6 Ii~~gG--kQykV~~Gd~i~ve 25 (108)
T CHL00075 6 IIEAGG--KQLWVEPGRFYDIN 25 (108)
T ss_pred EEEECC--EEEEEeCCCEEEEE
Confidence 344555 46888888888774
No 208
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=34.94 E-value=47 Score=20.36 Aligned_cols=20 Identities=25% Similarity=0.152 Sum_probs=15.2
Q ss_pred EEEECCCcEEEEcCCCeEEE
Q 037642 35 WVEFGAGDLVTIPKGLSCTW 54 (74)
Q Consensus 35 ~~~~~~GD~v~~p~g~~~~~ 54 (74)
...++|||++++-...-|.-
T Consensus 181 ~~~~~~Gdvl~~~~~~~H~s 200 (211)
T PF05721_consen 181 PVPMKAGDVLFFHSRLIHGS 200 (211)
T ss_dssp EE-BSTTEEEEEETTSEEEE
T ss_pred EeecCCCeEEEEcCCccccC
Confidence 56789999999987776654
No 209
>PF10618 Tail_tube: Phage tail tube protein; InterPro: IPR019596 This entry is represented by Bacteriophage Mu, GpM tail tube protein. Bacteriophage Mu has an eicosahedral head and contractile tail. The tail is composed of an outer sheath and an inner tube.
Probab=34.66 E-value=1.1e+02 Score=18.68 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=18.5
Q ss_pred EecEEEEEeCCCceEEEECCCcEEEEcCCC
Q 037642 21 LKGKVKVYPKGSSDWVEFGAGDLVTIPKGL 50 (74)
Q Consensus 21 leG~~~~~~~~g~e~~~~~~GD~v~~p~g~ 50 (74)
+.|.+.|++++. .+.+..| +-+++|-
T Consensus 5 i~G~a~i~vdG~--~l~~~~g--~~~~~gg 30 (119)
T PF10618_consen 5 IAGTAYIRVDGQ--QLPVKGG--ATYNPGG 30 (119)
T ss_pred EeEEEEEEECCE--EEEccCC--eEECCCC
Confidence 679999999994 5777776 4444443
No 210
>TIGR00062 L27 ribosomal protein L27. Eubacterial, chloroplast, and mitochondrial. Mitochondrial members have an additional C-terminal domain.
Probab=33.95 E-value=1e+02 Score=18.07 Aligned_cols=42 Identities=21% Similarity=0.266 Sum_probs=33.0
Q ss_pred EEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEE
Q 037642 18 CYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYY 64 (74)
Q Consensus 18 ~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y 64 (74)
-+|..|...+...+ ..+.||+-+-+-++.+.-..+.+.+ +++
T Consensus 29 q~V~~G~IivRQRG----tk~hPG~nVg~GrD~TlfAl~~G~V-~f~ 70 (83)
T TIGR00062 29 QFVRAGSIIVRQRG----TKFHPGNNVGMGKDHTLFALSDGVV-KFE 70 (83)
T ss_pred EEEcCCcEEEEcCC----ceECCCCcccccCCCeEEEecceEE-EEE
Confidence 46779999998887 3799999999988888777776665 444
No 211
>PRK06788 flagellar motor switch protein; Validated
Probab=33.82 E-value=22 Score=22.12 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=23.4
Q ss_pred ecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee
Q 037642 22 KGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV 58 (74)
Q Consensus 22 eG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~ 58 (74)
=|+..+++.+ -..+++||++.+.+...--.++.-
T Consensus 42 LG~t~ltl~D---lL~L~vGDVI~Ldk~~~dpv~v~V 75 (119)
T PRK06788 42 LGKASITLGD---VKQLKVGDVLEVEKNLGHKVDVYL 75 (119)
T ss_pred EecceecHHH---HhCCCCCCEEEeCCcCCCCEEEEE
Confidence 3667777766 478999999999755544444433
No 212
>PRK05610 rpsQ 30S ribosomal protein S17; Reviewed
Probab=33.80 E-value=85 Score=18.18 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=18.0
Q ss_pred EEECCCcEEEE----cCCCeEEEEEeeeE
Q 037642 36 VEFGAGDLVTI----PKGLSCTWDVSVAV 60 (74)
Q Consensus 36 ~~~~~GD~v~~----p~g~~~~~~~~~~~ 60 (74)
..++.||.|.| |=.-.-.|.+.+-+
T Consensus 52 n~~k~GD~V~I~e~rPlSK~K~~~v~~i~ 80 (84)
T PRK05610 52 NEAKIGDVVRIMETRPLSKTKRWRLVEIV 80 (84)
T ss_pred CCCCCCCEEEEEEcccCCCCEEEEEEEEE
Confidence 36999999999 55555567666554
No 213
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=33.65 E-value=49 Score=16.74 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=13.9
Q ss_pred EEEECCCcEEEE-cCCCeEEEEEee
Q 037642 35 WVEFGAGDLVTI-PKGLSCTWDVSV 58 (74)
Q Consensus 35 ~~~~~~GD~v~~-p~g~~~~~~~~~ 58 (74)
...+++||.+.+ .+...+.|....
T Consensus 12 ELs~~~Gd~i~v~~~~~~~W~~g~~ 36 (49)
T PF14604_consen 12 ELSFKKGDVITVLEKSDDGWWYGRN 36 (49)
T ss_dssp B-EB-TTEEEEEEEESSTSEEEEEE
T ss_pred EeeEcCCCEEEEEEeCCCCEEEEEE
Confidence 488899998854 444555555543
No 214
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=33.57 E-value=44 Score=15.95 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=15.9
Q ss_pred EEEECCCcEEEEcCC-CeEEEEEee
Q 037642 35 WVEFGAGDLVTIPKG-LSCTWDVSV 58 (74)
Q Consensus 35 ~~~~~~GD~v~~p~g-~~~~~~~~~ 58 (74)
.+.+.+||.+.+-.. ..+.|.+..
T Consensus 15 ~l~~~~Gd~v~v~~~~~~~w~~~~~ 39 (54)
T cd00174 15 ELSFKKGDIIEVLEKSDDGWWEGRL 39 (54)
T ss_pred CCCCCCCCEEEEEEcCCCCeEEEEE
Confidence 478899998877554 455555443
No 215
>COG1329 Transcriptional regulators, similar to M. xanthus CarD [Transcription]
Probab=33.56 E-value=1e+02 Score=20.39 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=26.0
Q ss_pred EEECCCcEEEEcCCCeEEEE------EeeeEEEEEEEecCCC
Q 037642 36 VEFGAGDLVTIPKGLSCTWD------VSVAVDKYYKFESTSS 71 (74)
Q Consensus 36 ~~~~~GD~v~~p~g~~~~~~------~~~~~~k~y~~~~~~~ 71 (74)
..+++||.|+.|+.--++-+ +.+.-...|+++-+-|
T Consensus 3 ~~Fk~Gd~VVYP~HGvG~I~~Ieeke~~Ge~~~yyVI~f~~~ 44 (166)
T COG1329 3 MAFKIGDHVVYPAHGVGIIQAIEEKEIAGETLEYYVIDFPQS 44 (166)
T ss_pred ccccCCCEEEecCCCceeeehhhhHhhcCceeEEEEEEEcCC
Confidence 35789999999998887765 4445667777765544
No 216
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=33.09 E-value=57 Score=23.79 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=21.5
Q ss_pred eEEEEEEecEEEEEeCCCceEEEECCCcEEEE
Q 037642 15 EETCYLLKGKVKVYPKGSSDWVEFGAGDLVTI 46 (74)
Q Consensus 15 ~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~ 46 (74)
-.-+++.+|...+..++ .+++||+++=
T Consensus 197 I~~i~v~~G~p~Vk~GD-----~VkkGqvLIs 223 (382)
T TIGR02876 197 IKRVYVTSGEPVVKKGD-----VVKKGDLLIS 223 (382)
T ss_pred EEEEEEcCCeEEEccCC-----EEcCCCEEEE
Confidence 56678889999888877 5789988864
No 217
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=32.26 E-value=29 Score=19.45 Aligned_cols=12 Identities=33% Similarity=0.628 Sum_probs=5.3
Q ss_pred EEEECCCcEEEE
Q 037642 35 WVEFGAGDLVTI 46 (74)
Q Consensus 35 ~~~~~~GD~v~~ 46 (74)
.+.++|||.+.|
T Consensus 10 ~y~l~pGD~l~i 21 (82)
T PF02563_consen 10 EYRLGPGDVLRI 21 (82)
T ss_dssp -----TT-EEEE
T ss_pred CCEECCCCEEEE
Confidence 589999999977
No 218
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=32.19 E-value=68 Score=18.17 Aligned_cols=14 Identities=29% Similarity=0.302 Sum_probs=11.1
Q ss_pred EEEECCCcEE-EEcC
Q 037642 35 WVEFGAGDLV-TIPK 48 (74)
Q Consensus 35 ~~~~~~GD~v-~~p~ 48 (74)
...++.||.| +||+
T Consensus 66 ~t~L~dGDeVa~~PP 80 (84)
T COG1977 66 DTPLKDGDEVAFFPP 80 (84)
T ss_pred cccCCCCCEEEEeCC
Confidence 3689999998 5676
No 219
>PRK05435 rpmA 50S ribosomal protein L27; Validated
Probab=31.83 E-value=1.1e+02 Score=17.88 Aligned_cols=42 Identities=24% Similarity=0.228 Sum_probs=33.4
Q ss_pred EEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEE
Q 037642 18 CYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYY 64 (74)
Q Consensus 18 ~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y 64 (74)
-+|..|...++..+ ..+.||.-|-+-.+.+.-..+.+.+ +++
T Consensus 29 ~~V~~G~IivRQRG----tk~~PG~nVg~GrD~TlfA~~~G~V-~f~ 70 (82)
T PRK05435 29 QFVKAGNIIVRQRG----TKFHPGVNVGRGKDHTLFALVDGVV-KFE 70 (82)
T ss_pred EEEcCCcEEEEeCC----CeECCCCCEeecCCceEEEecceEE-EEE
Confidence 46779999999887 4799999999999888777776665 444
No 220
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=31.77 E-value=27 Score=26.07 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=14.8
Q ss_pred EEECCCcEEEEcCCCeEE
Q 037642 36 VEFGAGDLVTIPKGLSCT 53 (74)
Q Consensus 36 ~~~~~GD~v~~p~g~~~~ 53 (74)
+.=.||++|++|.|+-|+
T Consensus 270 i~Qepge~VFvPsGW~hQ 287 (427)
T KOG2131|consen 270 IFQEPGETVFVPSGWHHQ 287 (427)
T ss_pred hhccCCceeeccCccccc
Confidence 344789999999999884
No 221
>cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=31.74 E-value=22 Score=20.84 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=16.5
Q ss_pred EEEEEeCCCceEEEECCCcEEEEc
Q 037642 24 KVKVYPKGSSDWVEFGAGDLVTIP 47 (74)
Q Consensus 24 ~~~~~~~~g~e~~~~~~GD~v~~p 47 (74)
.+.+..+| ..+.++.||++.|.
T Consensus 61 ~Gkir~eG--K~Yiv~DGDi~~f~ 82 (83)
T cd04867 61 AGKYRQEG--KDYVVQDGDIIFFK 82 (83)
T ss_pred cChhhhhC--CceEeeCCeEEEEE
Confidence 34566677 36999999999874
No 222
>PF01052 SpoA: Surface presentation of antigens (SPOA); InterPro: IPR001543 Proteins in this group are involved in a secretory pathway responsible for the surface presentation of invasion plasmid antigen needed for the entry of Salmonella and other species into mammalian cells [, ].They could play a role in preserving the translocation competence of the IPA antigens and are required for secretion of the three IPA proteins []. The C-terminal region of flagellar motor switch proteins FliN and FliM is also included in this entry. ; PDB: 3UEP_A 1O9Y_B 1YAB_A.
Probab=31.70 E-value=18 Score=19.91 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=19.9
Q ss_pred cEEEEEeCCCceEEEECCCcEEEEcCC--CeEEEEEe
Q 037642 23 GKVKVYPKGSSDWVEFGAGDLVTIPKG--LSCTWDVS 57 (74)
Q Consensus 23 G~~~~~~~~g~e~~~~~~GD~v~~p~g--~~~~~~~~ 57 (74)
|...+++.+ -..+++||++-++.. ......+.
T Consensus 17 ~~~~l~l~e---l~~L~~Gdvi~l~~~~~~~v~l~v~ 50 (77)
T PF01052_consen 17 GEASLTLGE---LLNLKVGDVIPLDKPADEPVELRVN 50 (77)
T ss_dssp EEEEEEHHH---HHC--TT-EEEECCESSTEEEEEET
T ss_pred EeeEeEHHH---HhcCCCCCEEEeCCCCCCCEEEEEC
Confidence 556666665 367999999999887 55555553
No 223
>PRK15175 Vi polysaccharide export protein VexA; Provisional
Probab=31.37 E-value=57 Score=23.73 Aligned_cols=42 Identities=10% Similarity=-0.040 Sum_probs=24.9
Q ss_pred EEEEEecEEEEEe------CCCceEEEECCCcEEEEcCCCeEEEEEeee
Q 037642 17 TCYLLKGKVKVYP------KGSSDWVEFGAGDLVTIPKGLSCTWDVSVA 59 (74)
Q Consensus 17 ~~~vleG~~~~~~------~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~ 59 (74)
...+.+|.-.+.+ +++...+.|++||.+++|+-.. ...+.+.
T Consensus 199 ~V~l~R~~~~~~i~l~dL~~~~~~ni~L~~GDvI~V~~~~~-~v~V~Ga 246 (355)
T PRK15175 199 EVHVTRQQHYFTARLSDIYQYPGLDIALQPDDRITLRQVTE-YVNVLGA 246 (355)
T ss_pred EEEEEECCEEEEEEHHHHhhCCcCCcEeCCCCEEEEccCCC-EEEEEEe
Confidence 3455566555542 1112358999999999998543 3444433
No 224
>KOG4600 consensus Mitochondrial ribosomal protein MRP7 (L2) [Translation, ribosomal structure and biogenesis]
Probab=31.28 E-value=1.1e+02 Score=19.70 Aligned_cols=46 Identities=24% Similarity=0.225 Sum_probs=33.0
Q ss_pred eEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEE
Q 037642 15 EETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYK 65 (74)
Q Consensus 15 ~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~ 65 (74)
.|=.+|..|...++..+ ..+.|||-|=|-+++..-.=. +...+++.
T Consensus 53 ~egq~V~~G~IIvrQRg----tkfHPG~nVGiGKDhtifaL~-eG~Vrf~k 98 (144)
T KOG4600|consen 53 YEGQSVIPGNIIVRQRG----TKFHPGDNVGIGKDHTIFALE-EGRVRFEK 98 (144)
T ss_pred cCCeeeecccEEEEecc----cccCCCcccccCCcceEEEee-ccEEEEEE
Confidence 45567889999998888 379999999998887654433 33335544
No 225
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=30.96 E-value=37 Score=19.53 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=12.5
Q ss_pred EEECCCcEEEEcCCC
Q 037642 36 VEFGAGDLVTIPKGL 50 (74)
Q Consensus 36 ~~~~~GD~v~~p~g~ 50 (74)
..++|||.|++.+..
T Consensus 4 L~Vk~Gd~ViV~~~~ 18 (75)
T PF11302_consen 4 LSVKPGDTVIVQDEQ 18 (75)
T ss_pred cccCCCCEEEEecCc
Confidence 358999999998777
No 226
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=30.90 E-value=59 Score=24.04 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=23.9
Q ss_pred CceEEEEEEecEEEEEeCCCceEEEECCCcEE
Q 037642 13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLV 44 (74)
Q Consensus 13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v 44 (74)
..+++++|.+|++.+....++-.+.+++||.|
T Consensus 280 ~ge~f~~i~eGEvdv~~~~~~v~vkl~~~dyf 311 (368)
T KOG1113|consen 280 QGEHFYIIEEGEVDVLKKRDGVEVKLKKGDYF 311 (368)
T ss_pred CcceEEEecccccchhhccCCeEEEechhhhc
Confidence 46889999999998886554344677888765
No 227
>PF01426 BAH: BAH domain; InterPro: IPR001025 The BAH (bromo-adjacent homology) family contains proteins such as eukaryotic DNA (cytosine-5) methyltransferases IPR001525 from INTERPRO, the origin recognition complex 1 (Orc1) proteins, as well as several proteins involved in transcriptional regulation. The BAH domain appears to act as a protein-protein interaction module specialised in gene silencing, as suggested for example by its interaction within yeast Orc1p with the silent information regulator Sir1p. The BAH module might therefore play an important role by linking DNA methylation, replication and transcriptional regulation [].; GO: 0003677 DNA binding; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 3SWR_A 3PTA_A 1M4Z_A 1ZBX_A ....
Probab=30.79 E-value=70 Score=18.41 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=10.9
Q ss_pred EECCCcEEEEcCCC
Q 037642 37 EFGAGDLVTIPKGL 50 (74)
Q Consensus 37 ~~~~GD~v~~p~g~ 50 (74)
+++.||.|++..+.
T Consensus 2 ~~~vGD~V~v~~~~ 15 (119)
T PF01426_consen 2 TYKVGDFVYVKPDD 15 (119)
T ss_dssp EEETTSEEEEECTS
T ss_pred EEeCCCEEEEeCCC
Confidence 57788888887766
No 228
>PF14623 Vint: Hint-domain
Probab=30.77 E-value=74 Score=20.86 Aligned_cols=30 Identities=30% Similarity=0.356 Sum_probs=23.1
Q ss_pred EecEEEEEeCCCceEE---EECCCcEEEEcCCC
Q 037642 21 LKGKVKVYPKGSSDWV---EFGAGDLVTIPKGL 50 (74)
Q Consensus 21 leG~~~~~~~~g~e~~---~~~~GD~v~~p~g~ 50 (74)
.+|.+.+++.++..+. .+++||.|.-|.|.
T Consensus 3 FaG~s~V~l~~~~~~v~i~~lR~G~~V~tp~G~ 35 (162)
T PF14623_consen 3 FAGSSLVTLASGRAPVRIDDLRAGDKVWTPRGP 35 (162)
T ss_pred ccCCcEEEEecCceeEEHHHccCCCEEECCCCC
Confidence 3788888888873212 48999999999987
No 229
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=30.76 E-value=83 Score=24.79 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=27.5
Q ss_pred CceEEEEEEecEEEEEeCCCceEEEECCCcEEEEc
Q 037642 13 DAEETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIP 47 (74)
Q Consensus 13 ~~~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p 47 (74)
+..-+++|++|.+.+..++|.---.+.+||+|=+-
T Consensus 47 p~~~l~vi~kG~vev~~~~g~v~~~~~~gdlFg~~ 81 (610)
T COG2905 47 PVHYLYVIRKGVVEVRSDGGEVLDRLAAGDLFGFS 81 (610)
T ss_pred CcceeEEEEeceeeEEcCCCeeeeeeccCccccch
Confidence 35678899999999999998323568999999553
No 230
>PRK06033 hypothetical protein; Validated
Probab=30.44 E-value=30 Score=19.92 Aligned_cols=33 Identities=9% Similarity=0.106 Sum_probs=21.0
Q ss_pred cEEEEEeCCCceEEEECCCcEEEEcC--CCeEEEEEee
Q 037642 23 GKVKVYPKGSSDWVEFGAGDLVTIPK--GLSCTWDVSV 58 (74)
Q Consensus 23 G~~~~~~~~g~e~~~~~~GD~v~~p~--g~~~~~~~~~ 58 (74)
|+..+.+.+ -..+++||++-+.. +.+....+.+
T Consensus 16 g~~~i~l~d---lL~L~~GDVI~L~~~~~~~v~v~V~~ 50 (83)
T PRK06033 16 GRSSMPIHQ---VLRMGRGAVIPLDATEADEVWILANN 50 (83)
T ss_pred ecccccHHH---HhCCCCCCEEEeCCCCCCcEEEEECC
Confidence 455555555 36899999999865 3444444443
No 231
>PF06577 DUF1134: Protein of unknown function (DUF1134); InterPro: IPR008325 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.42 E-value=72 Score=20.92 Aligned_cols=33 Identities=15% Similarity=0.142 Sum_probs=24.1
Q ss_pred EecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEE
Q 037642 21 LKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWD 55 (74)
Q Consensus 21 leG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~ 55 (74)
++|++.+.-.=+ -..++.||++++|=-.-.-++
T Consensus 109 v~GsAYlvgG~G--~~~l~~~~ivl~PIR~GvG~R 141 (160)
T PF06577_consen 109 VEGSAYLVGGVG--MTYLRNGDIVLAPIRTGVGAR 141 (160)
T ss_pred ccceEEEEccce--EEEEEeCCEEEEEeecCccee
Confidence 589998876665 468999999999855544444
No 232
>cd05829 Sortase_E Sortase E (SrtE) is a membrane transpeptidase found in gram-positive bacteria that cleaves surface proteins at a cell sorting motif and catalyzes a transpeptidation reaction in which the surface protein substrate is covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The function of Sortase E is unknown. In two different sortase families, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one sortase and it is thought that the different sortases anchor different surface protein classes. The sortase domain is a modified beta-barrel flanked by two (SrtA) or three (SrtB) short alpha-helices.
Probab=30.25 E-value=84 Score=19.54 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=29.1
Q ss_pred eEEEEEEecEEEEE-----eCCCceEEEECCCcEEEEc--CCCeEEEEEeee
Q 037642 15 EETCYLLKGKVKVY-----PKGSSDWVEFGAGDLVTIP--KGLSCTWDVSVA 59 (74)
Q Consensus 15 ~E~~~vleG~~~~~-----~~~g~e~~~~~~GD~v~~p--~g~~~~~~~~~~ 59 (74)
..=.++|.|+.... ... -..+++||.|.+- .|...++++.+.
T Consensus 48 ~~Gn~viaGH~~~~g~~~~F~~---L~~l~~GD~I~v~~~~g~~~~Y~V~~~ 96 (144)
T cd05829 48 EKGTAVLAGHVDSRGGPAVFFR---LGDLRKGDKVEVTRADGQTATFRVDRV 96 (144)
T ss_pred CCCCEEEEEecCCCCCChhhcc---hhcCCCCCEEEEEECCCCEEEEEEeEE
Confidence 34567788887554 222 3579999999884 467788887664
No 233
>COG5636 Uncharacterized conserved protein, contains Zn-ribbon-like motif [Function unknown]
Probab=30.21 E-value=28 Score=24.29 Aligned_cols=19 Identities=26% Similarity=0.562 Sum_probs=15.9
Q ss_pred EECCCcEEEEcCCCeEEEE
Q 037642 37 EFGAGDLVTIPKGLSCTWD 55 (74)
Q Consensus 37 ~~~~GD~v~~p~g~~~~~~ 55 (74)
.++|||.|.||.+....|.
T Consensus 262 af~PGd~v~~~~nld~~~~ 280 (284)
T COG5636 262 AFEPGDVVSFSMNLDNEFQ 280 (284)
T ss_pred CCCCCceeeeecccccchh
Confidence 4789999999999887664
No 234
>PF11651 P22_CoatProtein: P22 coat protein - gene protein 5
Probab=29.61 E-value=1.1e+02 Score=22.60 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=23.0
Q ss_pred EEEEeCCCceEEEECCCcEEEEcC------------CCeEEEEEee
Q 037642 25 VKVYPKGSSDWVEFGAGDLVTIPK------------GLSCTWDVSV 58 (74)
Q Consensus 25 ~~~~~~~g~e~~~~~~GD~v~~p~------------g~~~~~~~~~ 58 (74)
.+|.+.++. -.+++||.|.|.. |...++.|.+
T Consensus 248 ~ti~v~~~t--g~l~aGD~~tiagv~~v~~~tk~~~~~~~~f~V~~ 291 (414)
T PF11651_consen 248 TTITVSAGT--GGLKAGDVFTIAGVFAVNPQTKQTTGDLQQFVVTA 291 (414)
T ss_pred eEEEEecCc--cccccCCEEEECceeecccccccccccceEEEEEE
Confidence 477777763 3499999999977 5666666664
No 235
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=29.30 E-value=35 Score=24.09 Aligned_cols=15 Identities=27% Similarity=0.607 Sum_probs=12.5
Q ss_pred EECCCcEEEEcCCCe
Q 037642 37 EFGAGDLVTIPKGLS 51 (74)
Q Consensus 37 ~~~~GD~v~~p~g~~ 51 (74)
.++|||.+.||+|.=
T Consensus 7 ~A~~GDtI~l~~G~Y 21 (314)
T TIGR03805 7 AAQPGDTIVLPEGVF 21 (314)
T ss_pred hCCCCCEEEECCCEE
Confidence 568899999999865
No 236
>PF11356 Pilus_PilP: Type IV pilus biogenesis; InterPro: IPR022753 Type IV pili are required for auto-agglutination, twitching motility, biofilm formation, adherence and DNA uptake during transformation []. PilP is an inner membrane protein, required for pilus expression and transformation []. PilP interacts with PilQ which suggests that the two proteins may have coordinated activity in functions such as pilus extrusion/retraction []. ; PDB: 3OSS_C 2LNV_A.
Probab=28.99 E-value=94 Score=17.21 Aligned_cols=27 Identities=26% Similarity=0.550 Sum_probs=14.8
Q ss_pred cEEEEEeCCCceEEEECCCcEEEEcC-CCeE
Q 037642 23 GKVKVYPKGSSDWVEFGAGDLVTIPK-GLSC 52 (74)
Q Consensus 23 G~~~~~~~~g~e~~~~~~GD~v~~p~-g~~~ 52 (74)
..+.|...++ ....++.||. ||. |+..
T Consensus 41 ~~Aii~~~~~-~~~~~~~Gd~--i~~~g~~v 68 (87)
T PF11356_consen 41 SSAIIRPSGG-EQRTYRVGDT--IPGSGWTV 68 (87)
T ss_dssp -EEEEE-CTT-EEEEE-TTEE---SSSSEEE
T ss_pred eEEEEEeCCC-cEEEEECcCE--eCCCCEEE
Confidence 3456664444 5678999998 565 5443
No 237
>smart00783 A_amylase_inhib Alpha amylase inhibitor. Alpha amylase inhibitor inhibits mammalian alpha-amylases specifically, by forming a tight stoichiometric 1:1 complex with alpha-amylase. The inhibitor has no action on plant and microbial alpha amylases.
Probab=28.79 E-value=1.2e+02 Score=17.18 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=13.5
Q ss_pred eEEEECCCcEEEEcCCCe
Q 037642 34 DWVEFGAGDLVTIPKGLS 51 (74)
Q Consensus 34 e~~~~~~GD~v~~p~g~~ 51 (74)
....+.|||+..|| |.-
T Consensus 41 pCr~~~PG~~~Tf~-GYg 57 (69)
T smart00783 41 PCRTAAPGDITTFG-GYG 57 (69)
T ss_pred eeEeeCCCCEEEec-ccc
Confidence 45789999999999 543
No 238
>PRK08916 flagellar motor switch protein; Reviewed
Probab=28.62 E-value=31 Score=21.29 Aligned_cols=34 Identities=18% Similarity=0.365 Sum_probs=22.6
Q ss_pred ecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEee
Q 037642 22 KGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSV 58 (74)
Q Consensus 22 eG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~ 58 (74)
=|+..+++.+ -..+++||++.+.+...-..++.-
T Consensus 53 LG~~~ltl~E---LL~L~~GDVI~Ld~~~~e~V~I~V 86 (116)
T PRK08916 53 LGRSKMDVGQ---LLKLGPGSVLELDRKVGEAIDIYV 86 (116)
T ss_pred EecccccHHH---HhcCCCCCEEEcCCCCCCCEEEEE
Confidence 3666666666 378999999999755544444433
No 239
>TIGR00022 uncharacterized protein, YhcH/YjgK/YiaL family. This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK.
Probab=28.58 E-value=69 Score=19.86 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=17.8
Q ss_pred eEEEecCceEEEEEEecEEEEEe
Q 037642 7 KFQLKFDAEETCYLLKGKVKVYP 29 (74)
Q Consensus 7 ~~~~~~~~~E~~~vleG~~~~~~ 29 (74)
.|..|..+--+.|+|+|+=.+..
T Consensus 62 ~~E~Hr~YiDIq~~l~G~E~i~~ 84 (142)
T TIGR00022 62 KAELHHRYLDIQLLLRGEENIEV 84 (142)
T ss_pred chhhhhheEEEEEeecceEEEEE
Confidence 35566777889999999887776
No 240
>PF15603 Imm45: Immunity protein 45
Probab=28.57 E-value=1.3e+02 Score=17.47 Aligned_cols=31 Identities=3% Similarity=0.059 Sum_probs=16.0
Q ss_pred ecEEEEEeCCCceEEEECCCcEEEEcCCCeEEE
Q 037642 22 KGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTW 54 (74)
Q Consensus 22 eG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~ 54 (74)
.|..++.+.+| ....+ .|++++..++....|
T Consensus 7 ~s~i~~el~~G-~~~~~-~GE~l~~~~~~~~~F 37 (82)
T PF15603_consen 7 RSYITFELEEG-ARRKA-QGEMLLTGNDNDGDF 37 (82)
T ss_pred CCceEEEecCC-EEEEE-eeeEEEeccCCCcCE
Confidence 44556666655 23333 666666655444433
No 241
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.45 E-value=1.9e+02 Score=20.62 Aligned_cols=30 Identities=23% Similarity=0.222 Sum_probs=22.3
Q ss_pred EECCCcEEEEcCCCeEEEEEeeeEEEEEEE
Q 037642 37 EFGAGDLVTIPKGLSCTWDVSVAVDKYYKF 66 (74)
Q Consensus 37 ~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~ 66 (74)
+++|||.+++..|....=-...++..-|.|
T Consensus 261 ~~~pGd~vvv~dg~mki~G~d~kV~t~yiI 290 (293)
T COG4079 261 EVEPGDRVVVKDGVMKIDGKDLKVITGYII 290 (293)
T ss_pred ccCCCCEEEEecCceEeccccceeeeeeEE
Confidence 389999999999887766555666666654
No 242
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=28.26 E-value=73 Score=16.18 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=14.6
Q ss_pred EEEECCCcEEEEc--CCCeEEEEEee
Q 037642 35 WVEFGAGDLVTIP--KGLSCTWDVSV 58 (74)
Q Consensus 35 ~~~~~~GD~v~~p--~g~~~~~~~~~ 58 (74)
.+.+++||++.+- ......|....
T Consensus 15 ~Ls~~~Gd~i~v~~~~~~~~ww~~~~ 40 (55)
T PF07653_consen 15 ELSFKKGDVIEVLGEKDDDGWWLGEN 40 (55)
T ss_dssp B-EB-TTEEEEEEEEECSTSEEEEEE
T ss_pred ceEEecCCEEEEEEeecCCCEEEEEE
Confidence 5899999988664 44445566554
No 243
>PRK10533 putative lipoprotein; Provisional
Probab=28.25 E-value=57 Score=21.57 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=14.9
Q ss_pred ceEEEEEEecEEEEEeC
Q 037642 14 AEETCYLLKGKVKVYPK 30 (74)
Q Consensus 14 ~~E~~~vleG~~~~~~~ 30 (74)
.+|+.+|-||.|++.+|
T Consensus 133 qDEVLMirEg~cWvVDD 149 (171)
T PRK10533 133 QDEVLMIREGQCWVVDD 149 (171)
T ss_pred eeEEEEEecCCeEEEEE
Confidence 58999999999998764
No 244
>PRK12278 50S ribosomal protein L21/unknown domain fusion protein; Provisional
Probab=28.06 E-value=1.1e+02 Score=20.86 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=18.2
Q ss_pred EEEeCCCceEEEECCCcEEEEc-----CCCeEEEE
Q 037642 26 KVYPKGSSDWVEFGAGDLVTIP-----KGLSCTWD 55 (74)
Q Consensus 26 ~~~~~~g~e~~~~~~GD~v~~p-----~g~~~~~~ 55 (74)
.|...| ..+.+.+||.+.+. .|...+++
T Consensus 4 VI~~gG--KQykV~~Gd~i~Vekl~~~~G~~i~~~ 36 (221)
T PRK12278 4 VIKTGG--KQYKVQAGDLLRVEKLAAEAGETVQFG 36 (221)
T ss_pred EEEeCC--EEEEEeCCCEEEEeccCCCCCCEEEEe
Confidence 344555 46889999999884 35554444
No 245
>PRK11479 hypothetical protein; Provisional
Probab=27.62 E-value=38 Score=23.93 Aligned_cols=14 Identities=21% Similarity=0.271 Sum_probs=11.2
Q ss_pred EEECCCcEEEEcCC
Q 037642 36 VEFGAGDLVTIPKG 49 (74)
Q Consensus 36 ~~~~~GD~v~~p~g 49 (74)
-.++|||++++-.+
T Consensus 63 ~~LqpGDLVFfst~ 76 (274)
T PRK11479 63 PDLKPGDLLFSSSL 76 (274)
T ss_pred hhCCCCCEEEEecC
Confidence 35899999998654
No 246
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=27.51 E-value=52 Score=21.01 Aligned_cols=11 Identities=18% Similarity=0.320 Sum_probs=9.7
Q ss_pred EEECCCcEEEE
Q 037642 36 VEFGAGDLVTI 46 (74)
Q Consensus 36 ~~~~~GD~v~~ 46 (74)
..+++||+|+.
T Consensus 74 ~~~q~GDI~I~ 84 (145)
T PF05382_consen 74 WNLQRGDIFIW 84 (145)
T ss_pred ccccCCCEEEE
Confidence 57899999988
No 247
>PF06251 Caps_synth_GfcC: Capsule biosynthesis GfcC; InterPro: IPR010425 This entry represents uncharacterised bacterial proteins that contain a central beta-grasp like domain related to the SLBB domain [].; PDB: 3P42_B.
Probab=27.49 E-value=50 Score=22.05 Aligned_cols=14 Identities=21% Similarity=0.423 Sum_probs=8.6
Q ss_pred EEEECCCcEEEEcC
Q 037642 35 WVEFGAGDLVTIPK 48 (74)
Q Consensus 35 ~~~~~~GD~v~~p~ 48 (74)
...+.|||++++|=
T Consensus 190 ~~~l~PG~~I~Vp~ 203 (229)
T PF06251_consen 190 HQELAPGATIYVPF 203 (229)
T ss_dssp EEE--TT-EEEE-B
T ss_pred CCCCCCCCEEEEcC
Confidence 47899999999996
No 248
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=27.48 E-value=27 Score=19.99 Aligned_cols=28 Identities=36% Similarity=0.698 Sum_probs=17.2
Q ss_pred EEEecEEEEEeCCCceE---EEECCCcEEEEcC
Q 037642 19 YLLKGKVKVYPKGSSDW---VEFGAGDLVTIPK 48 (74)
Q Consensus 19 ~vleG~~~~~~~~g~e~---~~~~~GD~v~~p~ 48 (74)
++.+|.+.+ ++.-|+ .-+..||.+.||.
T Consensus 33 ~i~eg~V~v--NGe~EtRRgkKlr~gd~V~i~~ 63 (73)
T COG2501 33 FIAEGEVKV--NGEVETRRGKKLRDGDVVEIPG 63 (73)
T ss_pred HHHCCeEEE--CCeeeeccCCEeecCCEEEECC
Confidence 456665444 332122 3489999999985
No 249
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=27.36 E-value=33 Score=16.34 Aligned_cols=10 Identities=30% Similarity=0.654 Sum_probs=8.1
Q ss_pred ECCCcEEEEc
Q 037642 38 FGAGDLVTIP 47 (74)
Q Consensus 38 ~~~GD~v~~p 47 (74)
+.+|+.+.+|
T Consensus 35 l~~G~~l~iP 44 (44)
T PF01476_consen 35 LQPGQKLCIP 44 (44)
T ss_dssp GGTTEEEEEC
T ss_pred CCCCCEEEeC
Confidence 7788888877
No 250
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=27.33 E-value=29 Score=26.58 Aligned_cols=17 Identities=47% Similarity=0.980 Sum_probs=14.5
Q ss_pred EECCCcEEEEcCCCeEE
Q 037642 37 EFGAGDLVTIPKGLSCT 53 (74)
Q Consensus 37 ~~~~GD~v~~p~g~~~~ 53 (74)
.++.||+++||.|+++.
T Consensus 349 lL~~G~lvIFPEGTrsr 365 (498)
T PLN02499 349 ELARGDLVVCPEGTTCR 365 (498)
T ss_pred HhhCCCEEEcCCCCCCC
Confidence 48899999999998764
No 251
>PF02327 BChl_A: Bacteriochlorophyll A protein; InterPro: IPR003426 Bacteriochlorophyll A (or FMO) protein is involved in the energy transfer system of photosynthetic bacteria, such as Green Sulphur Bacteria. Bacteriochlorophyll A acts as a light-harvesting complex that directs light energy from the chlorosomes attached to the cell membrane to the reaction centre []. The protein forms a homotrimer, with each monomer unit containing seven molecules of bacteriochlorophyll A.; GO: 0015979 photosynthesis; PDB: 3EOJ_A 3ENI_C 3BSD_A.
Probab=27.33 E-value=2.3e+02 Score=20.53 Aligned_cols=48 Identities=15% Similarity=0.080 Sum_probs=36.6
Q ss_pred EEEEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEE
Q 037642 17 TCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKF 66 (74)
Q Consensus 17 ~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~ 66 (74)
+.-=|++++.+..+.. ..++..||-.+-=...+|++...+.+...|-+
T Consensus 69 tknkl~vE~DIANEtk--drRvavGeG~vsVGdFSH~FsfEG~Vvnm~Yy 116 (357)
T PF02327_consen 69 TKNKLAVEVDIANETK--DRRVAVGEGEVSVGDFSHKFSFEGSVVNMYYY 116 (357)
T ss_dssp EEEEEEEEEEEEESSS--SEEEEEEEEEEEETTEEEEEEEEEEEEEEESS
T ss_pred ccceEEEEEEeccCCC--cceEEeccceEEeccceeeEEeeeeEEEEEEe
Confidence 3344677777777774 57888888888888999999999998776643
No 252
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=27.32 E-value=1.7e+02 Score=18.51 Aligned_cols=49 Identities=4% Similarity=-0.077 Sum_probs=30.5
Q ss_pred EEEEEE-ecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeee-EEEEEEE
Q 037642 16 ETCYLL-KGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVA-VDKYYKF 66 (74)
Q Consensus 16 E~~~vl-eG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~-~~k~y~~ 66 (74)
.+-++. ...|.+.+++ ++...++|++++|-....|...-.+. -|-+.++
T Consensus 107 Hl~L~~p~~~~~~~v~~--~~~~w~~G~~~~fD~s~~H~~~N~~~~~Rv~L~v 157 (163)
T PF05118_consen 107 HLPLIVPNPGCYIRVGG--ETRHWREGECWVFDDSFEHEVWNNGDEDRVVLIV 157 (163)
T ss_dssp EEEEC--STTEEEEETT--EEEB--CTEEEEE-TTS-EEEEESSSS-EEEEEE
T ss_pred EEEEEcCCCCeEEEECC--eEEEeccCcEEEEeCCEEEEEEeCCCCCEEEEEE
Confidence 344445 3668899988 57999999999999998888766443 4444443
No 253
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=27.32 E-value=42 Score=18.20 Aligned_cols=26 Identities=38% Similarity=0.491 Sum_probs=16.5
Q ss_pred EEEEecEEEEEeCCCceEEEECCCcEEE-EcCC
Q 037642 18 CYLLKGKVKVYPKGSSDWVEFGAGDLVT-IPKG 49 (74)
Q Consensus 18 ~~vleG~~~~~~~~g~e~~~~~~GD~v~-~p~g 49 (74)
+.|+-|..+ . +...|++||-++ |++|
T Consensus 31 I~I~NGF~~---~---~d~~L~e~D~v~~IkkG 57 (57)
T PF14453_consen 31 IVILNGFPT---K---EDIELKEGDEVFLIKKG 57 (57)
T ss_pred EEEEcCccc---C---CccccCCCCEEEEEeCC
Confidence 446677552 2 237899999875 4554
No 254
>PF07828 PA-IL: PA-IL-like protein; InterPro: IPR012905 The members of this family are similar to the galactophilic lectin-1 expressed by Pseudomonas aeruginosa (PA-IL, Q05097 from SWISSPROT). Lectins recognising specific carbohydrates found on the surface of host cells are known to be involved in the initiation of infections by this organism. The protein is thought to be organised into an extensive network of beta-sheets, as is the case with many other lectins []. ; PDB: 3ZYB_E 3ZYF_C 1L7L_A 3ZYH_A.
Probab=27.28 E-value=61 Score=20.30 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=12.5
Q ss_pred ecEEEEEeCCCce-EEEECCCcEEEE
Q 037642 22 KGKVKVYPKGSSD-WVEFGAGDLVTI 46 (74)
Q Consensus 22 eG~~~~~~~~g~e-~~~~~~GD~v~~ 46 (74)
+|++-...+.|.. -..|++||.+.|
T Consensus 3 sG~VpA~~e~G~~TGl~lk~GD~IsI 28 (121)
T PF07828_consen 3 SGSVPANAEAGQNTGLILKAGDIISI 28 (121)
T ss_dssp EEEEETT-TT-EEEEEEE-TT-EEEE
T ss_pred cccccccccCCceeeEEEcCCCEEEE
Confidence 3455444555522 267899999866
No 255
>COG2013 Uncharacterized conserved protein [Function unknown]
Probab=27.10 E-value=2.1e+02 Score=19.55 Aligned_cols=43 Identities=26% Similarity=0.322 Sum_probs=29.2
Q ss_pred EEEEEEecEEEEEeC--CCceEEEECCCcEEEEcCCCeEEEEEee
Q 037642 16 ETCYLLKGKVKVYPK--GSSDWVEFGAGDLVTIPKGLSCTWDVSV 58 (74)
Q Consensus 16 E~~~vleG~~~~~~~--~g~e~~~~~~GD~v~~p~g~~~~~~~~~ 58 (74)
=+..-++|.+.+-+. +.=.++++.+||.+.+-+++...|+=.-
T Consensus 132 lf~~kl~G~G~v~l~s~G~~~~~~l~~ge~~~VD~~~~VA~~~~l 176 (227)
T COG2013 132 LFLLKLEGTGTVFLSSYGDPVEVELDPGETVTVDPGHVVAFSDSL 176 (227)
T ss_pred eEEEEEEeeeEEEEECCCCeEEEEcCCCceEEEcCCcEEEEcCCc
Confidence 344556666666553 3324578888999999999988887433
No 256
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=27.07 E-value=96 Score=17.25 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=12.9
Q ss_pred eEEEECCCcEEEEcCCC
Q 037642 34 DWVEFGAGDLVTIPKGL 50 (74)
Q Consensus 34 e~~~~~~GD~v~~p~g~ 50 (74)
+...+.+||++.+..|.
T Consensus 56 ~~~~~~aGdI~~v~~g~ 72 (86)
T cd03699 56 PTDELSAGQVGYIIAGI 72 (86)
T ss_pred CCceECCCCEEEEEccc
Confidence 34678999999887653
No 257
>PRK08433 flagellar motor switch protein; Validated
Probab=26.61 E-value=37 Score=20.82 Aligned_cols=33 Identities=15% Similarity=0.240 Sum_probs=21.1
Q ss_pred cEEEEEeCCCceEEEECCCcEEEEcCC--CeEEEEEee
Q 037642 23 GKVKVYPKGSSDWVEFGAGDLVTIPKG--LSCTWDVSV 58 (74)
Q Consensus 23 G~~~~~~~~g~e~~~~~~GD~v~~p~g--~~~~~~~~~ 58 (74)
|+..+++.+ -..+++||++.+... .+....+.+
T Consensus 41 G~t~itl~d---lL~Lq~GDVI~Ld~~~~e~v~v~V~g 75 (111)
T PRK08433 41 GTTQISLLE---ILKFEKGSVIDLEKPAGESVELYING 75 (111)
T ss_pred ecccccHHH---HhCCCCCCEEEeCCCCCCCEEEEECC
Confidence 555566655 368999999998654 344444433
No 258
>cd04721 BAH_plant_1 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=26.43 E-value=1.2e+02 Score=18.70 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=10.7
Q ss_pred EEECCCcEEEEcC
Q 037642 36 VEFGAGDLVTIPK 48 (74)
Q Consensus 36 ~~~~~GD~v~~p~ 48 (74)
..+++||.|++.+
T Consensus 6 ~~i~vGD~V~v~~ 18 (130)
T cd04721 6 VTISVHDFVYVLS 18 (130)
T ss_pred EEEECCCEEEEeC
Confidence 5799999999943
No 259
>PHA02872 EFc gene family protein; Provisional
Probab=25.86 E-value=1.7e+02 Score=18.20 Aligned_cols=43 Identities=19% Similarity=0.266 Sum_probs=28.9
Q ss_pred CceEEEEEEecEEEEEe--------CCCceEEEECCCcEEEEcCCCeEEEE
Q 037642 13 DAEETCYLLKGKVKVYP--------KGSSDWVEFGAGDLVTIPKGLSCTWD 55 (74)
Q Consensus 13 ~~~E~~~vleG~~~~~~--------~~g~e~~~~~~GD~v~~p~g~~~~~~ 55 (74)
...--.|.|||.+-+.. ++.++.--+..|+.|-|..+..+--.
T Consensus 59 gdtvkIYflEGkG~LIfSv~dv~sp~~eedSgyv~eG~~Vef~t~f~C~iT 109 (124)
T PHA02872 59 GDTVKIYFLEGKGGLIFSVSDVGSPDNEEDSGYVNEGECVEFETDFACFIT 109 (124)
T ss_pred CCeEEEEEEecCCcEEEEEEecCCCCccccccceecccEEEEecCceEEEE
Confidence 34556788898876542 11113456899999999999887544
No 260
>PF09953 DUF2187: Uncharacterized protein conserved in bacteria (DUF2187); InterPro: IPR018690 This family consists of various hypothetical bacterial proteins with known function. It includes the uncharacterised YkvS protein from Bacillus subtilis.
Probab=25.79 E-value=78 Score=17.26 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=13.1
Q ss_pred ECCCcEEEEcCCCeEEE
Q 037642 38 FGAGDLVTIPKGLSCTW 54 (74)
Q Consensus 38 ~~~GD~v~~p~g~~~~~ 54 (74)
.+.||++-|..|..++-
T Consensus 4 a~vGdiIefk~g~~G~V 20 (57)
T PF09953_consen 4 AKVGDIIEFKDGFTGIV 20 (57)
T ss_pred cccCcEEEEcCCcEEEE
Confidence 56899999988865544
No 261
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
Probab=25.77 E-value=1.1e+02 Score=25.79 Aligned_cols=13 Identities=31% Similarity=0.889 Sum_probs=10.3
Q ss_pred CCcCCceEEEecC
Q 037642 1 WGCSPGKFQLKFD 13 (74)
Q Consensus 1 W~~~pg~~~~~~~ 13 (74)
|+|+|-.|...++
T Consensus 1097 Weg~Pq~Falsyp 1109 (1175)
T COG5422 1097 WEGEPQEFALSYP 1109 (1175)
T ss_pred EcCccceeeeecc
Confidence 9999999865554
No 262
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=25.27 E-value=99 Score=19.31 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=17.1
Q ss_pred EEEECCCcEEEEcCCCeEEEEEeeeEE
Q 037642 35 WVEFGAGDLVTIPKGLSCTWDVSVAVD 61 (74)
Q Consensus 35 ~~~~~~GD~v~~p~g~~~~~~~~~~~~ 61 (74)
.+.-++|++++|+.+....+.-..++.
T Consensus 140 ~v~P~~G~~v~f~~~~~~~~H~v~pv~ 166 (178)
T smart00702 140 TVKPKKGDLLFFPSGRGRSLHGVCPVT 166 (178)
T ss_pred EEeCCCCcEEEEeCCCCCccccCCcce
Confidence 466678999999987533333333443
No 263
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=25.21 E-value=36 Score=25.47 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=16.3
Q ss_pred EEECCCcEEEEcCCCeEEEEE
Q 037642 36 VEFGAGDLVTIPKGLSCTWDV 56 (74)
Q Consensus 36 ~~~~~GD~v~~p~g~~~~~~~ 56 (74)
-.+-+-|+|+||+||.+.-++
T Consensus 298 AlVVEkdaVfIPAGWD~eKKI 318 (473)
T KOG3905|consen 298 ALVVEKDAVFIPAGWDNEKKI 318 (473)
T ss_pred ceEeecceeEeccCCCccccc
Confidence 356677999999999887554
No 264
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=24.99 E-value=63 Score=23.03 Aligned_cols=17 Identities=18% Similarity=0.413 Sum_probs=13.1
Q ss_pred EEEECCCcEEEE-cCCCe
Q 037642 35 WVEFGAGDLVTI-PKGLS 51 (74)
Q Consensus 35 ~~~~~~GD~v~~-p~g~~ 51 (74)
...++|||.+.| |.|..
T Consensus 28 ~~~y~~GD~l~i~p~N~~ 45 (360)
T cd06199 28 GLSYEPGDALGVYPTNDP 45 (360)
T ss_pred CCcccCCCEEEEEcCCCH
Confidence 378999999954 87754
No 265
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=24.91 E-value=90 Score=22.70 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=19.9
Q ss_pred eEEEEEEecEEEEEeCCCceEEEECCCcEEE
Q 037642 15 EETCYLLKGKVKVYPKGSSDWVEFGAGDLVT 45 (74)
Q Consensus 15 ~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~ 45 (74)
-+-+++.+|...+..++ .+++||+++
T Consensus 200 I~~i~v~~G~p~Vk~Gd-----~VkkGdvLI 225 (385)
T PF06898_consen 200 ITSIIVRSGTPLVKVGD-----TVKKGDVLI 225 (385)
T ss_pred EEEEEecCCeEEecCCC-----EECCCCEEE
Confidence 45677888888877766 578888885
No 266
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=24.86 E-value=61 Score=14.48 Aligned_cols=21 Identities=19% Similarity=0.378 Sum_probs=11.0
Q ss_pred EcCCCeEEEEEeeeEEEEEEEecC
Q 037642 46 IPKGLSCTWDVSVAVDKYYKFEST 69 (74)
Q Consensus 46 ~p~g~~~~~~~~~~~~k~y~~~~~ 69 (74)
+|.|+...++-. .+.|.++..
T Consensus 1 lp~gW~~~~~~~---g~~yy~n~~ 21 (32)
T smart00456 1 LPPGWEERKDPD---GRPYYYNHE 21 (32)
T ss_pred CCCCCEEEECCC---CCEEEEECC
Confidence 356666666544 344555443
No 267
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=24.63 E-value=62 Score=24.07 Aligned_cols=16 Identities=13% Similarity=0.084 Sum_probs=13.6
Q ss_pred eEEEECCCcEEEEcCC
Q 037642 34 DWVEFGAGDLVTIPKG 49 (74)
Q Consensus 34 e~~~~~~GD~v~~p~g 49 (74)
+++.+++||+++|..+
T Consensus 375 k~yiVedGDIi~FK~~ 390 (391)
T KOG1491|consen 375 KEYIVEDGDIIFFKFN 390 (391)
T ss_pred ceeeecCCCEEEEeec
Confidence 5799999999999754
No 268
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=24.44 E-value=74 Score=18.24 Aligned_cols=14 Identities=21% Similarity=0.347 Sum_probs=11.1
Q ss_pred EEEECCCcEEEEcC
Q 037642 35 WVEFGAGDLVTIPK 48 (74)
Q Consensus 35 ~~~~~~GD~v~~p~ 48 (74)
.+.+.|||.|.+..
T Consensus 44 ~i~I~~GD~V~Ve~ 57 (75)
T COG0361 44 RIRILPGDVVLVEL 57 (75)
T ss_pred eEEeCCCCEEEEEe
Confidence 47789999998843
No 269
>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes. It contains a well-conserved NCEHF motif, though its function in these proteins is unknown.; PDB: 2KYT_A 4DOT_A 4FA0_A.
Probab=24.37 E-value=82 Score=18.78 Aligned_cols=21 Identities=29% Similarity=0.770 Sum_probs=12.2
Q ss_pred EEECCCcEEEEcCCCeEEEEE
Q 037642 36 VEFGAGDLVTIPKGLSCTWDV 56 (74)
Q Consensus 36 ~~~~~GD~v~~p~g~~~~~~~ 56 (74)
..++|||++.++...=--|-+
T Consensus 5 ~~~~~GD~I~~~r~~y~H~gI 25 (125)
T PF04970_consen 5 KRLKPGDHIEVPRGLYEHWGI 25 (125)
T ss_dssp -S--TT-EEEEEETTEEEEEE
T ss_pred cCCCCCCEEEEecCCccEEEE
Confidence 468999999998884444443
No 270
>PF02408 CUB_2: CUB-like domain; InterPro: IPR003366 This domain is found in a family of hypothetical Caenorhabditis elegans proteins. The aligned region has no known function nor do any of the proteins which possess it. However, this domain is related to the CUB domain (IPR000859 from INTERPRO). The aligned region is approximately 130 amino acids long and contains two conserved cysteine residues.
Probab=24.24 E-value=70 Score=19.14 Aligned_cols=19 Identities=16% Similarity=0.520 Sum_probs=16.2
Q ss_pred CcEEEEcCCCeEEEEEeee
Q 037642 41 GDLVTIPKGLSCTWDVSVA 59 (74)
Q Consensus 41 GD~v~~p~g~~~~~~~~~~ 59 (74)
.++..||+|..|+|++.-|
T Consensus 33 ~~~~~~p~n~~C~y~i~iP 51 (120)
T PF02408_consen 33 TSPPQFPANQNCTYQINIP 51 (120)
T ss_pred CCccccCCCCceEEEEEcC
Confidence 3889999999999998554
No 271
>PRK08983 fliN flagellar motor switch protein; Validated
Probab=24.11 E-value=43 Score=20.96 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=21.6
Q ss_pred cEEEEEeCCCceEEEECCCcEEEEcC--CCeEEEEEee
Q 037642 23 GKVKVYPKGSSDWVEFGAGDLVTIPK--GLSCTWDVSV 58 (74)
Q Consensus 23 G~~~~~~~~g~e~~~~~~GD~v~~p~--g~~~~~~~~~ 58 (74)
|+.++++.+ -..+++||++.+.. +......+.+
T Consensus 60 G~t~ltl~d---lL~L~~GDVI~Ld~~~ddpv~v~Vng 94 (127)
T PRK08983 60 GRSFISIRN---LLQLNQGSVVELDRVAGEPLDVMVNG 94 (127)
T ss_pred ecCcccHHH---HhCCCCCCEEEeCCCCCCCEEEEECC
Confidence 555666665 47899999999866 4444444433
No 272
>PF04004 Leo1: Leo1-like protein; InterPro: IPR007149 Members of this family are part of the Paf1/RNA polymerase II complex [, ]. The Paf1 complex probably functions during the elongation phase of transcription [].
Probab=23.99 E-value=2.1e+02 Score=18.45 Aligned_cols=54 Identities=11% Similarity=0.121 Sum_probs=39.6
Q ss_pred eEEEEEEecEEEEEeCCCceEEEE-CC----C---cEEEEcCCCeEEEEEeeeEEEEEEEecCC
Q 037642 15 EETCYLLKGKVKVYPKGSSDWVEF-GA----G---DLVTIPKGLSCTWDVSVAVDKYYKFESTS 70 (74)
Q Consensus 15 ~E~~~vleG~~~~~~~~g~e~~~~-~~----G---D~v~~p~g~~~~~~~~~~~~k~y~~~~~~ 70 (74)
..++-==.|++.+.+.+ |.+.+ .. . -.++++.+...-..+...+.+.+.+.-++
T Consensus 67 AriVrWsDGS~sL~iG~--E~fdi~~~~~~~~~~~~~L~~~~~~~~~l~~~~~i~~~l~~rP~s 128 (171)
T PF04004_consen 67 ARIVRWSDGSLSLHIGN--EVFDIQKKYPLVQDDHNYLFVRHGSSGVLQGQGHITKKLTFRPAS 128 (171)
T ss_pred cEEEEEcCCceEEEecc--EEEEeccccccccCCcceEEEEcCCcceEEEEEEecccEEEecCC
Confidence 34555567999999988 57888 22 2 45677888878888999998888876544
No 273
>PF13403 Hint_2: Hint domain
Probab=23.82 E-value=1.9e+02 Score=18.04 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=22.9
Q ss_pred EecEEEEEeCCCceEEEECCCcEEEEcCCCeE
Q 037642 21 LKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSC 52 (74)
Q Consensus 21 leG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~ 52 (74)
..|....+.+|-...-.|++||.|.-..|...
T Consensus 4 ~~GT~I~T~~G~~~Ve~L~~GD~V~T~dgg~~ 35 (147)
T PF13403_consen 4 TAGTLIETPDGPRPVEDLRPGDRVLTRDGGFQ 35 (147)
T ss_pred CCCCEEecCCcCeEeeccCCCCEEEecCCCEE
Confidence 46777777777544456999999998866543
No 274
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=23.80 E-value=1.3e+02 Score=18.55 Aligned_cols=35 Identities=20% Similarity=0.163 Sum_probs=23.1
Q ss_pred EEEeCCCceEEEECCCcEEEE-----cCCCeEEEEEeeeEEEE
Q 037642 26 KVYPKGSSDWVEFGAGDLVTI-----PKGLSCTWDVSVAVDKY 63 (74)
Q Consensus 26 ~~~~~~g~e~~~~~~GD~v~~-----p~g~~~~~~~~~~~~k~ 63 (74)
.+.+.+| ..|..||.|.+ =+|...+.+.-..+|-+
T Consensus 42 ~~kDsnG---~~L~dGDsV~liKDLkVKGss~~~K~GTkVknI 81 (109)
T TIGR00686 42 IVKDCNG---NLLANGDSVILIKDLKVKGSSLVLKKGTKIKNI 81 (109)
T ss_pred eEEcCCC---CCccCCCEEEEEeeccccCcccceeCccEEEEE
Confidence 4555555 47999999987 35666666665555443
No 275
>PF05708 DUF830: Orthopoxvirus protein of unknown function (DUF830); PDB: 2IF6_B 3KW0_C.
Probab=23.79 E-value=48 Score=20.31 Aligned_cols=11 Identities=18% Similarity=0.453 Sum_probs=6.4
Q ss_pred ECCCcEEEEcC
Q 037642 38 FGAGDLVTIPK 48 (74)
Q Consensus 38 ~~~GD~v~~p~ 48 (74)
+++||++++..
T Consensus 2 l~~GDIil~~~ 12 (158)
T PF05708_consen 2 LQTGDIILTRG 12 (158)
T ss_dssp --TT-EEEEEE
T ss_pred CCCeeEEEEEC
Confidence 68999998844
No 276
>PF06940 DUF1287: Domain of unknown function (DUF1287); InterPro: IPR009706 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=23.62 E-value=99 Score=20.37 Aligned_cols=25 Identities=36% Similarity=0.399 Sum_probs=20.1
Q ss_pred EEECCCcEEEE--cCCCeEEEEEeeeE
Q 037642 36 VEFGAGDLVTI--PKGLSCTWDVSVAV 60 (74)
Q Consensus 36 ~~~~~GD~v~~--p~g~~~~~~~~~~~ 60 (74)
...+|||+|.+ |.|.+|---++..-
T Consensus 105 ~~~q~GDIVtw~l~~~~~HIgIVSd~r 131 (164)
T PF06940_consen 105 EDWQPGDIVTWRLPGGLPHIGIVSDRR 131 (164)
T ss_pred hhcCCCCEEEEeCCCCCCeEEEEeCCc
Confidence 58999999988 88888887776643
No 277
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=23.38 E-value=84 Score=15.01 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=15.0
Q ss_pred EEEECCCcEEEEcCC-CeEEEEEe
Q 037642 35 WVEFGAGDLVTIPKG-LSCTWDVS 57 (74)
Q Consensus 35 ~~~~~~GD~v~~p~g-~~~~~~~~ 57 (74)
...+++||.+.+-.. ..+.|.+.
T Consensus 18 ~l~~~~Gd~v~v~~~~~~~w~~~~ 41 (58)
T smart00326 18 ELSFKKGDIITVLEKSDDGWWKGR 41 (58)
T ss_pred CCCCCCCCEEEEEEcCCCCeEEEE
Confidence 478999998876544 44445443
No 278
>PF01356 A_amylase_inhib: Alpha amylase inhibitor; InterPro: IPR000833 Alpha-amylase inhibitor inhibits mammalian alpha-amylases specifically, by forming a tight stoichiometric 1:1 complex with alpha-amylase. The inhibitor has no action on plant and microbial alpha amylases. A crystal structure has been determined for tendamistat, the 74-amino acid inhibitor produced by Streptomyces tendae that targets a wide range of mammalian alpha-amylases []. The binding of tendamistat to alpha-amylase leads to the steric blockage of the active site of the enzyme. The crystal structure of tendamistat revealed an immunoglobulin-like fold that could potentially adopt multiple conformations. Such molecular flexibility could enable an induced-fit type of binding that would both optimise binding and allow broad target specificity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0015066 alpha-amylase inhibitor activity; PDB: 2KER_A 3AIT_A 1BVN_T 1HOE_A 4AIT_A 2AIT_A 1OK0_A.
Probab=23.26 E-value=1.1e+02 Score=17.23 Aligned_cols=13 Identities=31% Similarity=0.516 Sum_probs=10.3
Q ss_pred EEEECCCcEEEEc
Q 037642 35 WVEFGAGDLVTIP 47 (74)
Q Consensus 35 ~~~~~~GD~v~~p 47 (74)
-..+.|||++.||
T Consensus 41 Crv~~PG~~~Tf~ 53 (68)
T PF01356_consen 41 CRVIPPGDIATFP 53 (68)
T ss_dssp EEEE-TTEEEEEE
T ss_pred eEEeCCCCEEEec
Confidence 3679999999998
No 279
>PF11132 SplA: Transcriptional regulator protein (SplA); InterPro: IPR022608 The SplA protein functions in trans as a negative regulator of the level of splB-lacZ expression in the developing forespore [].
Probab=23.24 E-value=52 Score=18.92 Aligned_cols=11 Identities=36% Similarity=0.685 Sum_probs=9.0
Q ss_pred EEECCCcEEEE
Q 037642 36 VEFGAGDLVTI 46 (74)
Q Consensus 36 ~~~~~GD~v~~ 46 (74)
..+++||.|++
T Consensus 4 ~~~~~GD~VyV 14 (75)
T PF11132_consen 4 KPYHAGDIVYV 14 (75)
T ss_pred cccCCCCEEEE
Confidence 46889999976
No 280
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=22.86 E-value=54 Score=22.67 Aligned_cols=31 Identities=10% Similarity=0.167 Sum_probs=22.6
Q ss_pred EECCCcEEEEcCCCeEEEEEee-eEEEEEEEec
Q 037642 37 EFGAGDLVTIPKGLSCTWDVSV-AVDKYYKFES 68 (74)
Q Consensus 37 ~~~~GD~v~~p~g~~~~~~~~~-~~~k~y~~~~ 68 (74)
.+++||.+.+ .+-.+.+.... +-.|++++.+
T Consensus 87 ~lk~Gd~l~v-~~P~G~F~l~~~~~~~~llla~ 118 (266)
T COG1018 87 HLKVGDTLEV-SAPAGDFVLDDLPERKLLLLAG 118 (266)
T ss_pred cCCCCCEEEE-ecCCCCccCCCCCCCcEEEEec
Confidence 6899999999 77777777655 3345666654
No 281
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=22.81 E-value=2.6e+02 Score=19.17 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=26.7
Q ss_pred eEEEEEE-ecEEEEEeCCCceEEEECCCcEEEEcCCCe
Q 037642 15 EETCYLL-KGKVKVYPKGSSDWVEFGAGDLVTIPKGLS 51 (74)
Q Consensus 15 ~E~~~vl-eG~~~~~~~~g~e~~~~~~GD~v~~p~g~~ 51 (74)
.++-..+ ...+.+..||. ....+++||.+.+.....
T Consensus 242 ~~i~i~~~~~~~~~~~DG~-~~~~~~~~d~i~i~~s~~ 278 (285)
T PF01513_consen 242 SEIEIKVERREAVLAIDGQ-REIELKPGDEIRIRKSPK 278 (285)
T ss_dssp SEEEEEEESCEEEEEETTT-EEEEECTTEEEEEEEECC
T ss_pred CEEEEEEeCCCEEEEEECC-ceEEeCCCcEEEEEEcCC
Confidence 3344333 78999999997 679999999998865443
No 282
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=22.71 E-value=57 Score=18.38 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=13.6
Q ss_pred EEEEEeCCCceEEEECCCcEE
Q 037642 24 KVKVYPKGSSDWVEFGAGDLV 44 (74)
Q Consensus 24 ~~~~~~~~g~e~~~~~~GD~v 44 (74)
.++|+++| .++.+.+|+.+
T Consensus 3 ~v~i~idG--~~v~~~~G~ti 21 (82)
T PF13510_consen 3 MVTITIDG--KPVEVPPGETI 21 (82)
T ss_dssp EEEEEETT--EEEEEEET-BH
T ss_pred EEEEEECC--EEEEEcCCCHH
Confidence 35788888 46888888865
No 283
>PRK10671 copA copper exporting ATPase; Provisional
Probab=22.58 E-value=1.8e+02 Score=23.17 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=15.6
Q ss_pred EECCCcEEEEcCCCeEEEE
Q 037642 37 EFGAGDLVTIPKGLSCTWD 55 (74)
Q Consensus 37 ~~~~GD~v~~p~g~~~~~~ 55 (74)
++.+||++.+++|...-.+
T Consensus 340 ~l~~GD~v~v~~G~~iP~D 358 (834)
T PRK10671 340 DVQPGMLLRLTTGDRVPVD 358 (834)
T ss_pred HcCCCCEEEEcCCCEeeee
Confidence 4899999999999975444
No 284
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=22.54 E-value=81 Score=22.60 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=13.1
Q ss_pred EEEECCCcEEE-EcCCCe
Q 037642 35 WVEFGAGDLVT-IPKGLS 51 (74)
Q Consensus 35 ~~~~~~GD~v~-~p~g~~ 51 (74)
...++|||.+. +|.|..
T Consensus 28 ~~~y~~GD~l~v~p~N~~ 45 (382)
T cd06207 28 GLSYETGDNLGIYPENSD 45 (382)
T ss_pred CCccCCCCEEEEEcCCCH
Confidence 47899999994 488754
No 285
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=22.44 E-value=60 Score=13.82 Aligned_cols=13 Identities=38% Similarity=0.613 Sum_probs=8.8
Q ss_pred ECCCcEEEEcCCC
Q 037642 38 FGAGDLVTIPKGL 50 (74)
Q Consensus 38 ~~~GD~v~~p~g~ 50 (74)
+.+||.+.|-.|.
T Consensus 2 ~~~G~~V~I~~G~ 14 (28)
T smart00739 2 FEVGDTVRVIAGP 14 (28)
T ss_pred CCCCCEEEEeECC
Confidence 4678888775554
No 286
>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function.
Probab=22.44 E-value=53 Score=14.52 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=8.7
Q ss_pred EEECCCcEEEEc
Q 037642 36 VEFGAGDLVTIP 47 (74)
Q Consensus 36 ~~~~~GD~v~~p 47 (74)
..+.+|+.+.||
T Consensus 35 ~~~~~g~~l~ip 46 (46)
T cd00118 35 DNLQVGQKLKIP 46 (46)
T ss_pred cccCCCCEEecC
Confidence 467788877776
No 287
>CHL00121 rpl27 ribosomal protein L27; Reviewed
Probab=22.36 E-value=1.8e+02 Score=17.14 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=31.3
Q ss_pred EEEecEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEE
Q 037642 19 YLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYY 64 (74)
Q Consensus 19 ~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y 64 (74)
+|..|...++..+ ..+.||.-+-+-.+++.-..+.+.+ +++
T Consensus 30 ~V~~G~IivRQRG----tk~hPG~NVg~GrD~TlfAl~~G~V-~f~ 70 (86)
T CHL00121 30 KVSAGNILIRQRG----TKFKPGLNVGCGKDFTLYALIDGFV-KFK 70 (86)
T ss_pred EEcCCcEEEEcCC----CeECCCCcccccCCceEEEccceEE-EEE
Confidence 5668999888887 3789999998888887776666655 444
No 288
>PF05203 Hom_end_hint: Hom_end-associated Hint; InterPro: IPR007868 Homing endonucleases are encoded by mobile DNA elements that are found inserted within host genes in all domains of life. The crystal structure of the homing nuclease PI-Sce [] revealed two domains: an endonucleolytic centre resembling the C-terminal domain of Drosophila melanogaster Hedgehog protein, and a second domain containing the protein-splicing active site. This domain corresponds to the protein-splicing domain.; GO: 0030908 protein splicing; PDB: 1LWT_A 1UM2_B 1JVA_B 1GPP_A 1VDE_A 1EF0_B 1DFA_A 1LWS_A.
Probab=22.16 E-value=2.6e+02 Score=18.87 Aligned_cols=47 Identities=23% Similarity=0.314 Sum_probs=24.5
Q ss_pred ecEEEEEeCCCceE-EEECCCcEEEEcCCCeE-EEEEeeeEEEEEEEec
Q 037642 22 KGKVKVYPKGSSDW-VEFGAGDLVTIPKGLSC-TWDVSVAVDKYYKFES 68 (74)
Q Consensus 22 eG~~~~~~~~g~e~-~~~~~GD~v~~p~g~~~-~~~~~~~~~k~y~~~~ 68 (74)
+|.-.+..||.... ..++.||.|+=|.|.+. ...+.....+.|.|.-
T Consensus 4 ~gT~vlmaDG~~k~ie~i~~Gd~vmg~dg~~r~V~~~~~g~~~my~i~~ 52 (215)
T PF05203_consen 4 KGTRVLMADGSIKPIEDIKIGDQVMGPDGRPRRVTNVPRGREEMYRITQ 52 (215)
T ss_dssp TT-EEEBTTS-EEEGGG--TT-EEEBTTSSEEEEEE--EEEEEEEEEEE
T ss_pred CCCEEEecCCCeeEEeecccCCEEECCCCCcEEEEEecccceeEEEEEE
Confidence 45555555554111 24889999999999864 3445555666666544
No 289
>COG0791 Spr Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]
Probab=22.06 E-value=56 Score=20.95 Aligned_cols=12 Identities=33% Similarity=0.576 Sum_probs=10.5
Q ss_pred EECCCcEEEEcC
Q 037642 37 EFGAGDLVTIPK 48 (74)
Q Consensus 37 ~~~~GD~v~~p~ 48 (74)
.+++||+++|..
T Consensus 138 ~~~~GDlvff~~ 149 (197)
T COG0791 138 DLQPGDLVFFNT 149 (197)
T ss_pred hCCCCCEEEEec
Confidence 389999999986
No 290
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=22.01 E-value=55 Score=25.00 Aligned_cols=13 Identities=31% Similarity=0.317 Sum_probs=10.8
Q ss_pred EEECCCcEEEEcC
Q 037642 36 VEFGAGDLVTIPK 48 (74)
Q Consensus 36 ~~~~~GD~v~~p~ 48 (74)
..+++||+++|..
T Consensus 425 selqpGDLVFF~~ 437 (481)
T PRK13914 425 SQAKPGDLVFFDY 437 (481)
T ss_pred ccCCCCCEEEeCC
Confidence 3688999999974
No 291
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.84 E-value=1.3e+02 Score=21.08 Aligned_cols=28 Identities=11% Similarity=0.076 Sum_probs=22.1
Q ss_pred cEEEEEeCCCceEEEECCCcEEEEcCCCe
Q 037642 23 GKVKVYPKGSSDWVEFGAGDLVTIPKGLS 51 (74)
Q Consensus 23 G~~~~~~~~g~e~~~~~~GD~v~~p~g~~ 51 (74)
+.+.+.+||. ....+++||.+.|.....
T Consensus 238 ~~~~l~~DG~-~~~~l~~gd~i~i~~s~~ 265 (292)
T PRK03378 238 SDLEISCDSQ-IALPIQPGEEVLIRRSDY 265 (292)
T ss_pred CcEEEEECCc-eEEEcCCCcEEEEEECCC
Confidence 4678888886 578999999998866543
No 292
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=21.74 E-value=1e+02 Score=22.81 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=16.0
Q ss_pred EECCCcEEEEcCCCeEEEE
Q 037642 37 EFGAGDLVTIPKGLSCTWD 55 (74)
Q Consensus 37 ~~~~GD~v~~p~g~~~~~~ 55 (74)
.+.+||++.+++|...-.+
T Consensus 51 ~l~~GDiv~v~~G~~iP~D 69 (499)
T TIGR01494 51 DLVPGDIVLVKSGEIVPAD 69 (499)
T ss_pred HCCCCCEEEECCCCEeeee
Confidence 5889999999999976555
No 293
>PF14452 Multi_ubiq: Multiubiquitin
Probab=21.71 E-value=1.5e+02 Score=16.00 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=15.2
Q ss_pred eEEEECCCcEEEE-cCCCeEE
Q 037642 34 DWVEFGAGDLVTI-PKGLSCT 53 (74)
Q Consensus 34 e~~~~~~GD~v~~-p~g~~~~ 53 (74)
+...|.+||.|-+ ++|..+-
T Consensus 46 ~~~~i~~~e~Vdl~~~G~e~f 66 (72)
T PF14452_consen 46 PDGEIRPGESVDLRKPGMEFF 66 (72)
T ss_pred CccEeCCCCEEEECCCCeEEE
Confidence 4678999999988 7776543
No 294
>COG1868 FliM Flagellar motor switch protein [Cell motility and secretion]
Probab=21.62 E-value=78 Score=22.96 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=29.8
Q ss_pred cEEEEEeCCCceEEEECCCcEEEEcCCCeEEEEEeeeEEEEEEEe
Q 037642 23 GKVKVYPKGSSDWVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE 67 (74)
Q Consensus 23 G~~~~~~~~g~e~~~~~~GD~v~~p~g~~~~~~~~~~~~k~y~~~ 67 (74)
|...++.++ -..+++||.+-|+....-...+.-.-++.|.+.
T Consensus 262 ~~~~ltl~~---il~L~vGDVI~l~~~~~d~v~v~v~g~~~f~c~ 303 (332)
T COG1868 262 GEISLTLRE---ILRLEVGDVIPLEKPADDRVTVSVGGKPKFLCQ 303 (332)
T ss_pred ecceeeHHH---HhCCCCCcEEECCCCCCceEEEEECCEEEEEEe
Confidence 445555555 368999999999988666666666666777754
No 295
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=21.54 E-value=1.6e+02 Score=16.30 Aligned_cols=20 Identities=20% Similarity=0.096 Sum_probs=15.4
Q ss_pred ECCCcEEEEcC-CCeEEEEEe
Q 037642 38 FGAGDLVTIPK-GLSCTWDVS 57 (74)
Q Consensus 38 ~~~GD~v~~p~-g~~~~~~~~ 57 (74)
.++|++++|+. ...|.-.-.
T Consensus 66 p~~g~~v~F~~~~~~H~v~~v 86 (100)
T PF13640_consen 66 PKPGRLVIFPSDNSLHGVTPV 86 (100)
T ss_dssp -BTTEEEEEESCTCEEEEEEE
T ss_pred CCCCEEEEEeCCCCeecCccc
Confidence 77899999999 777766655
No 296
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=21.45 E-value=1.1e+02 Score=21.98 Aligned_cols=16 Identities=25% Similarity=0.700 Sum_probs=12.5
Q ss_pred EEECCCcEEEE-cCCCe
Q 037642 36 VEFGAGDLVTI-PKGLS 51 (74)
Q Consensus 36 ~~~~~GD~v~~-p~g~~ 51 (74)
+.++|||.+-| |.|..
T Consensus 28 ~~y~~GD~l~v~P~N~~ 44 (384)
T cd06206 28 MTYRAGDYLAVLPRNPP 44 (384)
T ss_pred CccCCCCEEEEECCCCH
Confidence 68999999954 77654
No 297
>PRK00809 hypothetical protein; Provisional
Probab=21.34 E-value=1.1e+02 Score=19.28 Aligned_cols=10 Identities=30% Similarity=0.498 Sum_probs=8.7
Q ss_pred EECCCcEEEE
Q 037642 37 EFGAGDLVTI 46 (74)
Q Consensus 37 ~~~~GD~v~~ 46 (74)
.+++||.++|
T Consensus 34 ~Mk~GD~v~f 43 (144)
T PRK00809 34 KVKPGDKLII 43 (144)
T ss_pred hCCCCCEEEE
Confidence 5899999987
No 298
>COG0261 RplU Ribosomal protein L21 [Translation, ribosomal structure and biogenesis]
Probab=21.24 E-value=2.1e+02 Score=17.43 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=13.5
Q ss_pred eEEEECCCcEEEE-----cCCCeEEEE
Q 037642 34 DWVEFGAGDLVTI-----PKGLSCTWD 55 (74)
Q Consensus 34 e~~~~~~GD~v~~-----p~g~~~~~~ 55 (74)
..+.+.+||.+.+ .+|...+++
T Consensus 10 KQykV~~G~~i~vEkl~~e~g~~v~f~ 36 (103)
T COG0261 10 KQYKVEEGDVIKVEKLDAEPGDKVEFD 36 (103)
T ss_pred EEEEEecCCEEEEEEcCCCCCCEEEEE
Confidence 4577777777666 455555543
No 299
>TIGR03784 marine_sortase sortase, marine proteobacterial type. Members of this protein family are sortase enzymes, cysteine transpeptidases involved in protein sorting activities. Members of this family tend to be found in proteobacteria, rather than in Gram-positive bacteria where sortases attach proteins to the Gram-positive cell wall or participate in pilin cross-linking. Many species with this sortase appear to contain a signal target sequence, a protein with a Vault protein inter-alpha-trypsin domain (pfam08487) and a von Willebrand factor type A domain (pfam00092), encoded by an adjacent gene. These sortases are designated subfamily 6 according to Comfort and Clubb (2004).
Probab=21.12 E-value=1.4e+02 Score=19.42 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=24.0
Q ss_pred EEEEEEecEEEEEeCCCceEEEECCCcEEEEc--CCCeEEEEEee
Q 037642 16 ETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIP--KGLSCTWDVSV 58 (74)
Q Consensus 16 E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p--~g~~~~~~~~~ 58 (74)
.=.+||.|+-.-.... -..+++||.+.+- .|...+++|.+
T Consensus 90 ~Gn~VIAGHrdt~F~~---L~~L~~GD~I~v~~~~g~~~~Y~V~~ 131 (174)
T TIGR03784 90 QGNSVIAGHRDTHFAF---LQELRPGDVIRLQTPDGQWQSYQVTA 131 (174)
T ss_pred CCcEEEEeeCCccCCC---hhhCCCCCEEEEEECCCeEEEEEEeE
Confidence 3456777775433333 3578899998885 34444566443
No 300
>PF02938 GAD: GAD domain; InterPro: IPR004115 This entry represetns an 2 layer alpha/beta insertion domain found in some glutamyl-tRNA amidotransferases and aspartyl tRNA synthetases [, ]. The function of this domain is not yet known.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0005737 cytoplasm; PDB: 1ZQ1_D 1EQR_B 1IL2_B 1C0A_A 1L0W_A 1G51_B 1EFW_B 2D6F_D.
Probab=21.12 E-value=39 Score=19.53 Aligned_cols=14 Identities=29% Similarity=0.363 Sum_probs=9.4
Q ss_pred EECCCcEEEEcCCC
Q 037642 37 EFGAGDLVTIPKGL 50 (74)
Q Consensus 37 ~~~~GD~v~~p~g~ 50 (74)
.+++||+++|=+|.
T Consensus 74 ~a~~GD~ll~~Ag~ 87 (95)
T PF02938_consen 74 GAKPGDLLLFVAGK 87 (95)
T ss_dssp T--TTEEEEEEEES
T ss_pred CCCCCCEEEEECCC
Confidence 47899999986664
No 301
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=21.11 E-value=2.8e+02 Score=18.89 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=32.4
Q ss_pred CceEEEEEEecEEEEEe--CCCce--EEEECC-CcEEEEcCCCeEEEEEee
Q 037642 13 DAEETCYLLKGKVKVYP--KGSSD--WVEFGA-GDLVTIPKGLSCTWDVSV 58 (74)
Q Consensus 13 ~~~E~~~vleG~~~~~~--~~g~e--~~~~~~-GD~v~~p~g~~~~~~~~~ 58 (74)
...|...||+|++.+.. +++.+ ...+.+ ++.-++|++..++-...+
T Consensus 32 g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s 82 (287)
T PRK12335 32 GTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAAS 82 (287)
T ss_pred CcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcC
Confidence 45899999999998886 33311 134566 445578898888888774
No 302
>TIGR02594 conserved hypothetical protein TIGR02594. Members of this protein family known so far are restricted to the bacteria, and for the most to the proteobacteria. The function is unknown.
Probab=21.07 E-value=2.2e+02 Score=17.54 Aligned_cols=12 Identities=8% Similarity=0.050 Sum_probs=9.1
Q ss_pred EECCCcEEEEcC
Q 037642 37 EFGAGDLVTIPK 48 (74)
Q Consensus 37 ~~~~GD~v~~p~ 48 (74)
..+|||+++|..
T Consensus 73 ~p~~GDiv~f~~ 84 (129)
T TIGR02594 73 KPAYGCIAVKRR 84 (129)
T ss_pred CCCccEEEEEEC
Confidence 357899999864
No 303
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=20.92 E-value=35 Score=19.65 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=16.6
Q ss_pred EecEEEEEeCCCceEEEECCCcEEEEcC
Q 037642 21 LKGKVKVYPKGSSDWVEFGAGDLVTIPK 48 (74)
Q Consensus 21 leG~~~~~~~~g~e~~~~~~GD~v~~p~ 48 (74)
-|+.+++..-+. ....+++||.|++..
T Consensus 37 hE~~G~V~~vG~-~v~~~~~Gd~V~~~~ 63 (109)
T PF08240_consen 37 HEGVGVVVAVGP-GVTDFKVGDRVVVSP 63 (109)
T ss_dssp SEEEEEEEEEST-TTTSSGTT-EEEEES
T ss_pred cceeeeeeeecc-ccccccccceeeeec
Confidence 356666665443 234599999998843
No 304
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=20.80 E-value=1.4e+02 Score=24.08 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=15.3
Q ss_pred EECCCcEEEEcCCCeEEEE
Q 037642 37 EFGAGDLVTIPKGLSCTWD 55 (74)
Q Consensus 37 ~~~~GD~v~~p~g~~~~~~ 55 (74)
++.+||++.+.+|...-.+
T Consensus 134 eLv~GDiv~l~~Gd~IPaD 152 (884)
T TIGR01522 134 TLVPGDLVCLSVGDRVPAD 152 (884)
T ss_pred HCccCCEEEecCCCEEeee
Confidence 5889999999999875444
No 305
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=20.78 E-value=1.3e+02 Score=23.27 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=21.7
Q ss_pred cEEEEEeCCCceEEEECCCcEEEEcCC
Q 037642 23 GKVKVYPKGSSDWVEFGAGDLVTIPKG 49 (74)
Q Consensus 23 G~~~~~~~~g~e~~~~~~GD~v~~p~g 49 (74)
+.+.+.+||. ....+.+||.+.|...
T Consensus 443 ~~a~lsiDGq-~~~~L~~GD~V~I~kS 468 (508)
T PLN02935 443 GQAWASFDGK-DRKQLSAGDALVCSMA 468 (508)
T ss_pred CceEEEEcCC-cceecCCCCEEEEEEC
Confidence 4688999997 5789999999999655
No 306
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.65 E-value=3e+02 Score=19.27 Aligned_cols=35 Identities=11% Similarity=0.036 Sum_probs=25.6
Q ss_pred eEEEEEEecEEEEEeCCCceEEEECCCcEEEEcCCC
Q 037642 15 EETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKGL 50 (74)
Q Consensus 15 ~E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g~ 50 (74)
.++-+-+...+.+..||. +...+++||.+.|....
T Consensus 228 ~~I~i~~~~~~~l~~DG~-~~~~l~~~d~i~I~~s~ 262 (287)
T PRK14077 228 FEVEFKTKSDCILCIDGQ-DRYKMNDFKSIKVGLSD 262 (287)
T ss_pred CEEEEEECCCEEEEEcCC-eeEecCCCCEEEEEECC
Confidence 344443556788888986 57899999999886654
No 307
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=20.48 E-value=2e+02 Score=24.43 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=22.6
Q ss_pred EEEEEEecEEEEEeCCCceEEEECCCcEEEEcCC
Q 037642 16 ETCYLLKGKVKVYPKGSSDWVEFGAGDLVTIPKG 49 (74)
Q Consensus 16 E~~~vleG~~~~~~~~g~e~~~~~~GD~v~~p~g 49 (74)
+-+-|+++....+++. .++-|||+++||++
T Consensus 250 ~~V~V~R~g~~~ti~S----~eLVPGDil~i~~~ 279 (1140)
T KOG0208|consen 250 CPVTVIRDGFWETVDS----SELVPGDILYIPPP 279 (1140)
T ss_pred ceEEEEECCEEEEEec----cccccccEEEECCC
Confidence 3455667766677766 36899999999996
No 308
>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily. The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.
Probab=20.26 E-value=62 Score=19.76 Aligned_cols=10 Identities=30% Similarity=0.474 Sum_probs=6.2
Q ss_pred EECCCcEEEE
Q 037642 37 EFGAGDLVTI 46 (74)
Q Consensus 37 ~~~~GD~v~~ 46 (74)
.+++||.++|
T Consensus 39 ~mk~GD~vif 48 (143)
T PF01878_consen 39 RMKPGDKVIF 48 (143)
T ss_dssp C--TT-EEEE
T ss_pred cCCCCCEEEE
Confidence 6999999988
No 309
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=20.20 E-value=51 Score=16.27 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=14.9
Q ss_pred EEEECCCcEEEE-cCCCeEEEEEee
Q 037642 35 WVEFGAGDLVTI-PKGLSCTWDVSV 58 (74)
Q Consensus 35 ~~~~~~GD~v~~-p~g~~~~~~~~~ 58 (74)
.+.+++||.+.+ -....+.|.+..
T Consensus 13 eLs~~~Gd~i~v~~~~~~~Ww~~~~ 37 (48)
T PF00018_consen 13 ELSFKKGDIIEVLEKSDDGWWKVRN 37 (48)
T ss_dssp BSEB-TTEEEEEEEESSSSEEEEEE
T ss_pred EEeEECCCEEEEEEecCCCEEEEEE
Confidence 589999999966 334445555443
No 310
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=20.20 E-value=89 Score=24.08 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=12.9
Q ss_pred EEEECCCcEE-EEcCCCe
Q 037642 35 WVEFGAGDLV-TIPKGLS 51 (74)
Q Consensus 35 ~~~~~~GD~v-~~p~g~~ 51 (74)
...++|||.+ ++|.|..
T Consensus 265 ~~~Y~~GD~l~V~P~N~~ 282 (597)
T TIGR01931 265 GLHYEPGDALGVWYKNDP 282 (597)
T ss_pred CCccCCCCEEEEEeCCCH
Confidence 3789999999 4587753
No 311
>cd04710 BAH_fungalPHD BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=20.14 E-value=2.3e+02 Score=17.66 Aligned_cols=22 Identities=9% Similarity=0.054 Sum_probs=14.7
Q ss_pred EEeCCCceEEEECCCcEEEEcCCCe
Q 037642 27 VYPKGSSDWVEFGAGDLVTIPKGLS 51 (74)
Q Consensus 27 ~~~~~g~e~~~~~~GD~v~~p~g~~ 51 (74)
+...+| ..++.||.|++-+...
T Consensus 4 ~~~~~g---~~~~vgD~Vyv~~~~~ 25 (135)
T cd04710 4 LVLKNG---ELLKVNDHIYMSSEPP 25 (135)
T ss_pred EEccCC---eEEeCCCEEEEecCCC
Confidence 344454 5889999998865443
No 312
>TIGR03635 S17_bact 30S ribosomal protein S17. This model describes the bacterial ribosomal small subunit protein S17, while excluding cytosolic eukaryotic homologs and archaeal homologs. The model finds many, but not, chloroplast and mitochondrial counterparts to bacterial S17.
Probab=20.08 E-value=68 Score=17.97 Aligned_cols=15 Identities=33% Similarity=0.339 Sum_probs=11.7
Q ss_pred EEECCCcEEEEcCCC
Q 037642 36 VEFGAGDLVTIPKGL 50 (74)
Q Consensus 36 ~~~~~GD~v~~p~g~ 50 (74)
..++.||.|.|-+.-
T Consensus 47 ~~~k~GD~V~I~ecr 61 (71)
T TIGR03635 47 NECKVGDVVRIIETR 61 (71)
T ss_pred CCCCCCCEEEEEEcC
Confidence 479999999995543
Done!