BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>037643
MEERHQELKRLGFFGILKESFKLIFSHKKLFTQISQSLLIPISIILEVKILTAILFSFNM
FKNRADPEDITVFIIPQFSTLNISYIASFKWVALWLLSEVTYLILLLVLSILSTVTIAYS
TASIYKTKDTTFKKAAAVVPELWKPVLITFLLVFAVTFVYDYILGPVLGLILRLLFLKRF
AFLKIVIGVILTVLYIVVFVYITLIWHVGTMVSALENDIYGAKAIIKGRNFLKGKMKDSV
AVFVVLLTLAAGVDAAFALVVVYGTIRIWAIRIGIGILLVLLKLMMVLIGLVAQTVIYFV
CKSYHDENFEDLYDAADDQKLSLDVQYQKLTV

High Scoring Gene Products

Symbol, full name Information P value
AT1G31130 protein from Arabidopsis thaliana 5.3e-16
AT4G19950 protein from Arabidopsis thaliana 1.8e-09
AT5G44860 protein from Arabidopsis thaliana 4.6e-08

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  037643
        (332 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2029529 - symbol:AT1G31130 "AT1G31130" species...   201  5.3e-16   1
TAIR|locus:2119807 - symbol:AT4G19950 "AT4G19950" species...   153  1.8e-09   1
TAIR|locus:2155307 - symbol:AT5G44860 "AT5G44860" species...   138  4.6e-08   2


>TAIR|locus:2029529 [details] [associations]
            symbol:AT1G31130 "AT1G31130" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0005794 "Golgi apparatus" evidence=IDA]
            [GO:0000165 "MAPK cascade" evidence=RCA] [GO:0009814 "defense
            response, incompatible interaction" evidence=RCA] [GO:0048767 "root
            hair elongation" evidence=RCA] [GO:0005768 "endosome" evidence=IDA]
            [GO:0005802 "trans-Golgi network" evidence=IDA] EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005794 GO:GO:0005768 GO:GO:0005802
            EMBL:AC004793 eggNOG:NOG266006 HOGENOM:HOG000238363
            ProtClustDB:CLSN2687286 UniGene:At.32766 EMBL:AF325096
            EMBL:AY081258 EMBL:AY114569 EMBL:AY085433 IPI:IPI00547279
            PIR:H86436 RefSeq:NP_564374.1 UniGene:At.25129 UniGene:At.66818
            STRING:Q9SA06 PaxDb:Q9SA06 PRIDE:Q9SA06 EnsemblPlants:AT1G31130.1
            GeneID:839998 KEGG:ath:AT1G31130 TAIR:At1g31130 InParanoid:Q9SA06
            OMA:PILLRIR PhylomeDB:Q9SA06 ArrayExpress:Q9SA06
            Genevestigator:Q9SA06 Uniprot:Q9SA06
        Length = 321

 Score = 201 (75.8 bits), Expect = 5.3e-16, P = 5.3e-16
 Identities = 55/199 (27%), Positives = 80/199 (40%)

Query:   119 YSTASIYXXXXXXXXXXXXVVPELWKPVLITFLLVFAVTFVYDYXXXXXXXXXXXXXXXX 178
             ++ AS+Y             +P+++K + ITFL V  + F Y+                 
Sbjct:   102 FTVASLYTGKPVSFSSTLSAIPKVFKRLFITFLWVALLMFAYN-AVFFVFLVMLLVALDL 160

Query:   179 XXXXXXXVIGVILTVLYIVVFVYITLIWHVGTMVSALENDIYGAKAIIKGRNFLKGKMKD 238
                    V GVI++VLY  V VY T +WH+G+++S LE  +YG  A+ K    LKGK K 
Sbjct:   161 NSLGLAIVAGVIISVLYFGVHVYFTALWHLGSVISVLE-PVYGIAAMRKAYELLKGKTKM 219

Query:   239 SXXXXXXXXXXXXXXDAAFALVVVYGTXXXXXXXXXXXXXXXXXXXXXXXXXXX-AQTVI 297
             +                 F  VVV+G                              Q+V 
Sbjct:   220 AMGLIFVYLFLCGLIGVVFGAVVVHGGGKYGTFTRTLVGGLLVGVLVMVNLVGLLVQSVF 279

Query:   298 YFVCKSYHDENFED--LYD 314
             Y+VCKSYH +  +   LYD
Sbjct:   280 YYVCKSYHHQTIDKTALYD 298


>TAIR|locus:2119807 [details] [associations]
            symbol:AT4G19950 "AT4G19950" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
            "cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002687 HOGENOM:HOG000238363
            ProtClustDB:CLSN2687286 EMBL:BT015045 EMBL:BT015640 IPI:IPI00529590
            RefSeq:NP_193728.2 UniGene:At.32766 EnsemblPlants:AT4G19950.1
            GeneID:827739 KEGG:ath:AT4G19950 TAIR:At4g19950 InParanoid:Q6DBH7
            OMA:ACKAFHN PhylomeDB:Q6DBH7 Genevestigator:Q6DBH7 Uniprot:Q6DBH7
        Length = 321

 Score = 153 (58.9 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 47/193 (24%), Positives = 72/193 (37%)

Query:   119 YSTASIYXXXXXXXXXXXXVVPELWKPVLITFLLVFAVTFVYDYXXXXXXXXXXXXXXXX 178
             ++ AS+Y             +P + K + ITFL V  +   Y+                 
Sbjct:   102 FTVASLYTGKPVSFSSTMSAIPLVLKRLFITFLWVSLLMLAYNTVFLIFLVTLIVAVDLQ 161

Query:   179 XXXXXXXVIGVILTVLYIVVFVYITLIWHVGTMVSALENDIYGAKAIIKGRNFLKGKMKD 238
                     + V++ VL++VV VY+T +WH+ ++VS LE  IYG  A+ K    LKGK   
Sbjct:   162 NVVLAVFSL-VVIFVLFLVVHVYMTALWHLASVVSVLE-PIYGLAAMKKSYELLKGKTLM 219

Query:   239 SXXXXXXXXXXXXXXDAAFALVVVYG-TXXXXXXXXXXXXXXXXXXXXXXXXXXXAQTVI 297
             +                 F  VVV G                              Q+V 
Sbjct:   220 ACSMVFIYLVHCGFIAGVFGAVVVRGGDDYGIFARIVAGGFLVGVLVIVNLIGLLVQSVF 279

Query:   298 YFVCKSYHDENFE 310
             Y+VCKS+H +  +
Sbjct:   280 YYVCKSFHHQEID 292


>TAIR|locus:2155307 [details] [associations]
            symbol:AT5G44860 "AT5G44860" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0006007 "glucose catabolic process" evidence=RCA]
            EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AB010693 EMBL:AC002342
            EMBL:AY087051 EMBL:BT003852 EMBL:BT005700 IPI:IPI00536184
            RefSeq:NP_199299.1 UniGene:At.24720 PaxDb:O48574 PRIDE:O48574
            EnsemblPlants:AT5G44860.1 GeneID:834516 KEGG:ath:AT5G44860
            TAIR:At5g44860 eggNOG:NOG266006 HOGENOM:HOG000238363
            InParanoid:O48574 OMA:HEWTLLL PhylomeDB:O48574
            ProtClustDB:CLSN2687286 ArrayExpress:O48574 Genevestigator:O48574
            Uniprot:O48574
        Length = 321

 Score = 138 (53.6 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
 Identities = 45/190 (23%), Positives = 70/190 (36%)

Query:   119 YSTASIYXXXXXXXXXXXXVVPELWKPVLITFLLVFAVTFVYDYXXXXXXXXXXXXXXXX 178
             ++ AS+Y             +P + K + ITFL V  +  VY+                 
Sbjct:   102 FTVASLYTGKPVSFSSTMSAIPLVLKRLFITFLWVSLMMLVYNSVFLLFLVVLIVAIDLQ 161

Query:   179 XXXXXXXVIGVILTVLYIVVFVYITLIWHVGTMVSALENDIYGAKAIIKGRNFLKGKMKD 238
                     + V++ VL++ V VY+T  WH+ ++VS LE  IYG  A+ K    L G+   
Sbjct:   162 SVILAVFSM-VVIFVLFLGVHVYMTAWWHLASVVSVLE-PIYGIAAMKKSYELLNGRTNM 219

Query:   239 SXXXXXXXXXXXXXXDAAFALVVVYG-TXXXXXXXXXXXXXXXXXXXXXXXXXXXAQTVI 297
             +                 F  VVV+G                              Q+V 
Sbjct:   220 ACSMVFMYLALCGITAGVFGGVVVHGGDDFGLFTKIVVGGFLVGILVIVNLVGLLVQSVF 279

Query:   298 YFVCKSYHDE 307
             Y+VCKS+H +
Sbjct:   280 YYVCKSFHHQ 289

 Score = 38 (18.4 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query:     1 MEERHQELKRLGFFGILKESFKLI-FSHKKLF 31
             M+   +EL+ L   GIL+ES  +  FS K  +
Sbjct:     1 MDLAAEELQFLNIQGILRESTTIPKFSPKTFY 32


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.328   0.142   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      332       220   0.00094  112 3  11 22  0.42    32
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  168 KB (2098 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.69u 0.12s 13.81t   Elapsed:  00:00:00
  Total cpu time:  13.69u 0.12s 13.81t   Elapsed:  00:00:00
  Start:  Thu May  9 16:33:04 2013   End:  Thu May  9 16:33:04 2013

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