Query 037643
Match_columns 332
No_of_seqs 108 out of 189
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 03:01:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037643.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037643hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06161 DUF975: Protein of un 98.9 1.7E-06 3.8E-11 79.6 27.6 170 113-305 63-243 (243)
2 PF10110 GPDPase_memb: Membran 98.9 4.9E-08 1.1E-12 83.7 12.8 134 115-252 7-148 (149)
3 PF06790 UPF0259: Uncharacteri 98.7 1.6E-05 3.5E-10 73.6 24.0 188 10-242 2-193 (248)
4 PRK02868 hypothetical protein; 98.4 0.00021 4.6E-09 65.9 24.0 164 99-302 79-243 (245)
5 COG4781 Membrane domain of mem 94.4 5 0.00011 38.4 24.9 149 75-235 52-213 (340)
6 PF10110 GPDPase_memb: Membran 90.4 10 0.00022 32.2 14.0 41 5-45 16-59 (149)
7 PRK04949 putative sulfate tran 77.6 61 0.0013 30.2 20.1 21 9-30 6-26 (251)
8 PF11368 DUF3169: Protein of u 64.7 22 0.00047 32.9 6.7 18 242-259 10-27 (248)
9 COG5523 Predicted integral mem 55.9 1.8E+02 0.0039 27.3 13.4 33 213-246 168-203 (271)
10 PF04515 Choline_transpo: Plas 54.5 2E+02 0.0042 27.3 29.7 95 211-306 221-329 (334)
11 PF13197 DUF4013: Protein of u 52.0 1.5E+02 0.0033 25.3 14.5 54 101-154 99-153 (169)
12 PF15069 FAM163: FAM163 family 43.4 36 0.00078 29.0 3.9 17 291-307 25-41 (143)
13 PF02439 Adeno_E3_CR2: Adenovi 40.2 45 0.00098 21.8 3.1 25 283-307 10-34 (38)
14 PF02480 Herpes_gE: Alphaherpe 31.9 15 0.00033 37.0 0.0 49 280-328 356-404 (439)
15 PF05545 FixQ: Cbb3-type cytoc 31.9 1E+02 0.0023 20.8 4.2 10 319-328 40-49 (49)
16 PF04854 DUF624: Protein of un 31.6 2.1E+02 0.0045 20.9 8.7 38 111-148 22-61 (77)
17 PF13197 DUF4013: Protein of u 30.6 3.4E+02 0.0073 23.1 15.9 54 107-165 12-65 (169)
18 PF04341 DUF485: Protein of un 28.5 1.7E+02 0.0036 22.7 5.3 17 231-247 10-26 (91)
19 KOG3142 Prenylated rab accepto 24.3 3.5E+02 0.0077 24.1 7.2 31 127-157 50-80 (187)
20 PF06975 DUF1299: Protein of u 20.7 50 0.0011 22.0 0.9 13 319-331 12-24 (47)
No 1
>PF06161 DUF975: Protein of unknown function (DUF975); InterPro: IPR010380 This is a family of uncharacterised bacterial proteins.
Probab=98.95 E-value=1.7e-06 Score=79.63 Aligned_cols=170 Identities=11% Similarity=0.158 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhhhcC-CCCChhHHHHhh--hhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--hhch-h--H
Q 037643 113 STVTIAYSTASIYKT-KDTTFKKAAAVV--PELWKPVLITFLLVFAVTFVYDYILG-PVLGLILRLLFL--KRFA-F--L 183 (332)
Q Consensus 113 s~aaiv~av~~~y~g-~~~t~~~~l~~~--~~~wk~ll~T~l~~~ll~~~~~~~~~-~~~~l~~~~~~~--~~~~-~--~ 183 (332)
-.....+..-.+..| ++.++++..... ++.+| .+.+.+...+..+....+.. |....+...... +... . .
T Consensus 63 l~~G~~~~~L~~~r~~~~~~~~d~f~~F~~~~f~k-~~~~~ll~~l~~~Lw~ll~~i~~~i~~~~~~~~~~~~~~~~~~~ 141 (243)
T PF06161_consen 63 LSAGYSFFYLDIVRGKEEPSFSDLFYGFKKKRFGK-SFLLYLLISLFIFLWSLLFIIGFFIFFISFFIFLVGSMNSRSSI 141 (243)
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhH
Confidence 335555666677777 899999999876 44444 56666555555544444322 211111111111 1111 1 0
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhhhheeeeecCCchhhHHhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 037643 184 --KIVIGVILTVLYIVVFVYITLIWHVGTMVSALENDIYGAKAIIKGRNFLKGKMKDSVAVFVVLLTLAAGVDAAFALVV 261 (332)
Q Consensus 184 --~~~~~~~~~i~~~~~~~y~~vvw~la~VVSVlE~~~~G~~Al~rS~~L~kG~~~~~l~l~l~~~l~~~~i~~~f~~~v 261 (332)
.........++..+.-.|....+.++.-+-.-+||....+|+++|+++|||++|+-+.+-+-+- +|.+=..+
T Consensus 142 ~~~~~~~~~~~l~~~i~~i~~~~~y~~~~yil~d~~~~~~~~al~~S~~lmkg~k~~~f~l~Lsfi------gw~~L~~~ 215 (243)
T PF06161_consen 142 ISLLLLLVLLLLLLIIPGIIVSYSYSMVPYILADNPELGAFEALKRSRKLMKGNKWRLFLLDLSFI------GWYILGLL 215 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHhhHHHHHHHHHHHHH------HHHHHHHH
Confidence 1111111122222333455555555554434445678899999999999999999988766543 22111101
Q ss_pred HhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 037643 262 VYGTIRIWAIRIGIGILLVLLKLMMVLIGLVAQTVIYFVCKSYH 305 (332)
Q Consensus 262 ~~~~~~~~g~~v~~~~~~~~l~~~~~l~~~v~~tV~Y~~CK~~~ 305 (332)
.. ......+.++..++++.||.|.|+++
T Consensus 216 ------------t~----gi~~l~~~pY~~~~~a~fY~~l~~~~ 243 (243)
T PF06161_consen 216 ------------TF----GIGLLWVIPYINTAQAEFYEELRKRK 243 (243)
T ss_pred ------------HH----HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 11 11123445999999999999999875
No 2
>PF10110 GPDPase_memb: Membrane domain of glycerophosphoryl diester phosphodiesterase; InterPro: IPR018476 Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase [].
Probab=98.86 E-value=4.9e-08 Score=83.68 Aligned_cols=134 Identities=13% Similarity=0.143 Sum_probs=92.1
Q ss_pred HHHHHHHHhhhcCCCCChhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-c-hh------HHHH
Q 037643 115 VTIAYSTASIYKTKDTTFKKAAAVVPELWKPVLITFLLVFAVTFVYDYILGPVLGLILRLLFLKR-F-AF------LKIV 186 (332)
Q Consensus 115 aaiv~av~~~y~g~~~t~~~~l~~~~~~wk~ll~T~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~-~-~~------~~~~ 186 (332)
+..+..+.+.+.||+.+.++.++...+.+|+........ .+.|..+..|+..+.....++.. . |+ ..-.
T Consensus 7 ~~li~~~~~~~~~~~~s~~~l~~~~~~~~~~l~~~~~l~---~l~y~ll~lP~~~~~~~s~ll~~l~IP~FI~~~i~~~~ 83 (149)
T PF10110_consen 7 AFLILGIYRILRGEKISLRSLLKTAFKRLRKLFGPQNLL---FLLYFLLILPFANLGFSSSLLSKLKIPEFITDYIMKNP 83 (149)
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcccHHHH---HHHHHHHHHHHHHHHHHHHHHccCcCchHHHHHHHHhH
Confidence 455667788899999999999987666667666555433 33445555665544433222211 0 11 0001
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhheeeeecCCchhhHHhhhhhhhhcccchHHHHHHHHHHHHHHH
Q 037643 187 IGVILTVLYIVVFVYITLIWHVGTMVSALENDIYGAKAIIKGRNFLKGKMKDSVAVFVVLLTLAAG 252 (332)
Q Consensus 187 ~~~~~~i~~~~~~~y~~vvw~la~VVSVlE~~~~G~~Al~rS~~L~kG~~~~~l~l~l~~~l~~~~ 252 (332)
.......+..+...|++++|.++...-++| |+.-.+|+|+||+++||++|+.+...+...+..++
T Consensus 84 ~~~~~~~~~~~~~~~l~~R~if~lp~~vle-~~~~~~A~k~Sw~ltk~~~~~~~~~~l~~~~~~~~ 148 (149)
T PF10110_consen 84 WLLILYLLLYLILFYLNIRLIFVLPLIVLE-NKSFKEALKESWQLTKGRFWRILGRLLLLFIIIGI 148 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 112344455567889999999999999999 88888999999999999999999888887765543
No 3
>PF06790 UPF0259: Uncharacterised protein family (UPF0259); InterPro: IPR009627 This is a group of proteins of unknown function.
Probab=98.67 E-value=1.6e-05 Score=73.57 Aligned_cols=188 Identities=12% Similarity=0.097 Sum_probs=110.3
Q ss_pred CCCHHHHHHHHHHhHhhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcC--CCCCccCCCChhhhhhhhhhHh
Q 037643 10 RLGFFGILKESFKLIFSHKKLFTQISQSLLIPISIILEVKILTAILFSFNMFKNRA--DPEDITVFIIPQFSTLNISYIA 87 (332)
Q Consensus 10 ~lg~~~Il~Es~~i~~~n~~~F~~i~~ll~lPls~l~~~~~l~~~~~~~pl~~~i~--~~~~~~~~~~~~~~~~~l~~~~ 87 (332)
|-..-+++|++++-+|++..- .+.+.+...+--. .+.|.+ .|=.++++ .+ +.+..+.... .++.++.
T Consensus 2 ~ita~~l~rDs~nFfrnq~~~--I~llsll~a~itv----il~~~~--~p~~~~l~~l~~-~~~~~~~~sl--~~~v~~m 70 (248)
T PF06790_consen 2 PITANSLYRDSFNFFRNQLIS--ILLLSLLTAFITV----ILNHIF--SPNAEQLQILSN-NSDFSSSMSL--QDIVQQM 70 (248)
T ss_pred cccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----HHHHHh--CccHHHHHHHHh-hhchhccccH--HHHHHhC
Confidence 345678999999999888772 2222222222112 233322 23233332 11 1111111111 3334444
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhHHHHhhhhhhhHH-HHHHHHHHHHHHHHHHHHH
Q 037643 88 SFKWV-ALWLLSEVTYLILLLVLSILSTVTIAYSTASIYKTKDTTFKKAAAVVPELWKPV-LITFLLVFAVTFVYDYILG 165 (332)
Q Consensus 88 ~~~~~-~lll~~~~~yl~~~~~~slls~aaiv~av~~~y~g~~~t~~~~l~~~~~~wk~l-l~T~l~~~ll~~~~~~~~~ 165 (332)
+.|=. .++-. +++.....++-..+-.++++.=......||+.+..++++...+.|+|+ +.++++..++.++.....
T Consensus 71 s~eqq~~ll~~-sa~~~~s~Lig~~lL~g~li~li~~~s~g~~~s~~~~i~~~~~~lp~LllL~~l~tllI~lG~~L~i- 148 (248)
T PF06790_consen 71 SPEQQNVLLKA-SAASTFSSLIGNTLLSGGLITLIQAVSNGQRVSILQAIGASLPLLPRLLLLIFLCTLLIQLGFMLFI- 148 (248)
T ss_pred CHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-
Confidence 33322 23333 666666666666777777777788888999999999998765667764 344444433333222211
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeeecCCchhhHHhhhhhhhhcccchHHHHH
Q 037643 166 PVLGLILRLLFLKRFAFLKIVIGVILTVLYIVVFVYITLIWHVGTMVSALENDIYGAKAIIKGRNFLKGKMKDSVAV 242 (332)
Q Consensus 166 ~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~y~~vvw~la~VVSVlE~~~~G~~Al~rS~~L~kG~~~~~l~l 242 (332)
++ =+++.+.+++|+++-+.| +..-.+|+|+||++.+|+.|.....
T Consensus 149 ---------------------------vP----GI~l~I~lslap~ilv~e-k~~i~~Amr~S~~Lt~~~~~ii~p~ 193 (248)
T PF06790_consen 149 ---------------------------VP----GIILAILLSLAPIILVLE-KKGIFDAMRASWKLTFGNFRIIIPA 193 (248)
T ss_pred ---------------------------HH----HHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 136678889999999999 8888999999999999987765433
No 4
>PRK02868 hypothetical protein; Provisional
Probab=98.42 E-value=0.00021 Score=65.89 Aligned_cols=164 Identities=12% Similarity=0.084 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhHHHHhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037643 99 EVTYLILLLVLSILSTVTIAYSTASIYKTKDTTFKKAAAVVPELWKPVL-ITFLLVFAVTFVYDYILGPVLGLILRLLFL 177 (332)
Q Consensus 99 ~~~yl~~~~~~slls~aaiv~av~~~y~g~~~t~~~~l~~~~~~wk~ll-~T~l~~~ll~~~~~~~~~~~~~l~~~~~~~ 177 (332)
+++-..-.++...+-.+++..=....-.||+++..+++....+.|++++ .++++..++.++...
T Consensus 79 s~~~~~s~lig~~lL~g~il~~I~~~s~g~~v~~~~~~~~s~~~lp~l~lL~fl~tLlI~lG~~L--------------- 143 (245)
T PRK02868 79 SAASTFSGLIGNTLLLGGILTLIQLVSAGQRVSALRAIGASAPILPKLLILIFLTTLLIQLGFML--------------- 143 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---------------
Confidence 4444444445455555555555555567889999999988777786653 333333222221111
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeeecCCchhhHHhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHH
Q 037643 178 KRFAFLKIVIGVILTVLYIVVFVYITLIWHVGTMVSALENDIYGAKAIIKGRNFLKGKMKDSVAVFVVLLTLAAGVDAAF 257 (332)
Q Consensus 178 ~~~~~~~~~~~~~~~i~~~~~~~y~~vvw~la~VVSVlE~~~~G~~Al~rS~~L~kG~~~~~l~l~l~~~l~~~~i~~~f 257 (332)
+.+-=+|+.+..+++.++-+.| +..-.+|+|+||++.+|+.|...-.++. .+.....-..+
T Consensus 144 -----------------~iiPGI~l~I~lsLa~vi~v~e-k~~v~~Air~S~~l~~~~~~~i~p~il~-Wll~k~ll~ll 204 (245)
T PRK02868 144 -----------------VVVPGILLAIALSLSPVILVTE-KMGIFASMRASMRLAWANMRLVAPAVLL-WLLAKTLLLLL 204 (245)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 1112347788899999999999 7777899999999999998877663333 32222222211
Q ss_pred HHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 037643 258 ALVVVYGTIRIWAIRIGIGILLVLLKLMMVLIGLVAQTVIYFVCK 302 (332)
Q Consensus 258 ~~~v~~~~~~~~g~~v~~~~~~~~l~~~~~l~~~v~~tV~Y~~CK 302 (332)
...... .+.. ...++...+..++..+..+..-=+|+-.|
T Consensus 205 ~~~l~~-----~~~~-v~~vi~~~l~nlls~fllIylFRlYmL~~ 243 (245)
T PRK02868 205 ASSFAV-----LTPN-VAAVLLNTLSNLISAILLIYLFRLYMLLR 243 (245)
T ss_pred HHHHhc-----cChH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 111110 1111 33445566667777777776666666554
No 5
>COG4781 Membrane domain of membrane-anchored glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=94.38 E-value=5 Score=38.42 Aligned_cols=149 Identities=21% Similarity=0.203 Sum_probs=75.1
Q ss_pred ChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhHHHHhhhh-hhhHHHHHHHHH
Q 037643 75 IPQFSTLNISYIASFKWVALWLLSEVTYLILLLVLSILSTVTIAYSTASIYKTKDTTFKKAAAVVPE-LWKPVLITFLLV 153 (332)
Q Consensus 75 ~~~~~~~~l~~~~~~~~~~lll~~~~~yl~~~~~~slls~aaiv~av~~~y~g~~~t~~~~l~~~~~-~wk~ll~T~l~~ 153 (332)
.|.-+.+++.+-+++....+.+ .+++.....+--+=-.-..|-+-+...+|-.++++..+..-+ .|| +..--+
T Consensus 52 ~~~is~nN~~~ils~p~~vl~L---l~~l~ll~~~vY~efg~~~~~~i~~~~~~~~t~rkiF~~~~~~lkk-~~~~q~-- 125 (340)
T COG4781 52 QPFISYNNVGEILSHPPLVLLL---LALLFLLLLLVYLEFGLLFYMAIALLYNEIYTFRKIFHESFVFLKK-LTGYQL-- 125 (340)
T ss_pred CccccHhHHHHHHcCcHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHH--
Confidence 4433336666666655442222 222222222222222233444444455678899998875433 444 333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--ch----------hHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeeecCCchh
Q 037643 154 FAVTFVYDYILGPVLGLILRLLFLKR--FA----------FLKIVIGVILTVLYIVVFVYITLIWHVGTMVSALENDIYG 221 (332)
Q Consensus 154 ~ll~~~~~~~~~~~~~l~~~~~~~~~--~~----------~~~~~~~~~~~i~~~~~~~y~~vvw~la~VVSVlE~~~~G 221 (332)
+..+.|....+|+.-+..-...... -| ..+..+ ...+.....|++++--++..--+++ +..=
T Consensus 126 -lfFv~Y~lLliP~~~~~Ls~~lt~kiyiP~Fi~~eL~Ktt~~~~l----~~~~l~liFyis~RLif~LPl~i~~-~~tv 199 (340)
T COG4781 126 -LFFVFYILLLIPFARLGLSIVLTNKIYIPEFITEELMKTTWGWWL----LILFLALIFYISVRLIFALPLIILD-QLTV 199 (340)
T ss_pred -HHHHHHHHHHHHHHHhcccHHHHccccchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHh-hhhH
Confidence 2223344445554433322111100 00 012222 2222223339999999988888887 7777
Q ss_pred hHHhhhhhhhhccc
Q 037643 222 AKAIIKGRNFLKGK 235 (332)
Q Consensus 222 ~~Al~rS~~L~kG~ 235 (332)
.+|+|+||+-+|-|
T Consensus 200 ~~Air~Swk~TKk~ 213 (340)
T COG4781 200 REAIRESWKKTKKN 213 (340)
T ss_pred HHHHHHHHHHHhhh
Confidence 89999999999944
No 6
>PF10110 GPDPase_memb: Membrane domain of glycerophosphoryl diester phosphodiesterase; InterPro: IPR018476 Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase [].
Probab=90.44 E-value=10 Score=32.17 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=29.5
Q ss_pred cccccCCCHHHHHHHHHHhHhhCh---hhHHHHHHHHHHHHHHH
Q 037643 5 HQELKRLGFFGILKESFKLIFSHK---KLFTQISQSLLIPISII 45 (332)
Q Consensus 5 ~~~~~~lg~~~Il~Es~~i~~~n~---~~F~~i~~ll~lPls~l 45 (332)
.++-++.+..++++++.+-.++-. ..+..+-+++++|+.-+
T Consensus 16 ~~~~~~~s~~~l~~~~~~~~~~l~~~~~l~~l~y~ll~lP~~~~ 59 (149)
T PF10110_consen 16 ILRGEKISLRSLLKTAFKRLRKLFGPQNLLFLLYFLLILPFANL 59 (149)
T ss_pred HHcCCcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 345567789999999988776433 25666777888888755
No 7
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=77.60 E-value=61 Score=30.16 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=16.1
Q ss_pred cCCCHHHHHHHHHHhHhhChhh
Q 037643 9 KRLGFFGILKESFKLIFSHKKL 30 (332)
Q Consensus 9 ~~lg~~~Il~Es~~i~~~n~~~ 30 (332)
++.+-.+.+.++++.+ ++|++
T Consensus 6 ~~~~G~~~~~~g~~~l-~~P~l 26 (251)
T PRK04949 6 QPRSGFHYFIQGWKLI-LQPGL 26 (251)
T ss_pred hhhhHHHHHHHHHHHh-cCcch
Confidence 3446678899999998 78874
No 8
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=64.71 E-value=22 Score=32.86 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037643 242 VFVVLLTLAAGVDAAFAL 259 (332)
Q Consensus 242 l~l~~~l~~~~i~~~f~~ 259 (332)
.++...++.+++++..+.
T Consensus 10 ~~~~~illg~~iGg~~G~ 27 (248)
T PF11368_consen 10 RFLLLILLGGLIGGFIGF 27 (248)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333444444443
No 9
>COG5523 Predicted integral membrane protein [Function unknown]
Probab=55.94 E-value=1.8e+02 Score=27.31 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=24.3
Q ss_pred eeecCCchh---hHHhhhhhhhhcccchHHHHHHHHH
Q 037643 213 SALENDIYG---AKAIIKGRNFLKGKMKDSVAVFVVL 246 (332)
Q Consensus 213 SVlE~~~~G---~~Al~rS~~L~kG~~~~~l~l~l~~ 246 (332)
.++| |..+ .+++..|...|||.+|.-+.+-+-+
T Consensus 168 ~~l~-dg~~~ga~~vl~eS~~mMKG~kw~lF~L~Lsf 203 (271)
T COG5523 168 DQLE-DGGYLGAYSVLSESKKMMKGYKWKLFILKLSF 203 (271)
T ss_pred HHHH-hCCCcchhHHHhHHHHHHhccccchhhhhHHH
Confidence 4556 4333 4679999999999999998665554
No 10
>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [].
Probab=54.49 E-value=2e+02 Score=27.30 Aligned_cols=95 Identities=9% Similarity=0.010 Sum_probs=50.1
Q ss_pred eeeeecCCchhhHHhhhhhhhhcccchHHHHHHHH-------HHHHHHHHHHHHHHHHHhcc----ccchhH-HHHHH--
Q 037643 211 MVSALENDIYGAKAIIKGRNFLKGKMKDSVAVFVV-------LLTLAAGVDAAFALVVVYGT----IRIWAI-RIGIG-- 276 (332)
Q Consensus 211 VVSVlE~~~~G~~Al~rS~~L~kG~~~~~l~l~l~-------~~l~~~~i~~~f~~~v~~~~----~~~~g~-~v~~~-- 276 (332)
+...+- +..=.+|-||+++|++-|.+++...--+ ..+..+...+.......+.. +..... .....
T Consensus 221 i~~ai~-G~~F~~sak~~~~L~~~n~~~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (334)
T PF04515_consen 221 IYIAIY-GKSFCESAKRAFELIKRNGLRAIIVDGLGSFVLFLGKLFISLLCGLIAYLILSNSSFKNDLSYPIVPALISFF 299 (334)
T ss_pred HHHHhc-CCchHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccchHHHHHHHHH
Confidence 333444 3333578899999999887764433221 12222333333333333221 111111 11222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 037643 277 ILLVLLKLMMVLIGLVAQTVIYFVCKSYHD 306 (332)
Q Consensus 277 ~~~~~l~~~~~l~~~v~~tV~Y~~CK~~~~ 306 (332)
+-+........+++..+.|++.+.|...+.
T Consensus 300 i~~~i~~~f~~v~~~~vdti~vc~~~d~e~ 329 (334)
T PF04515_consen 300 IGYFISSIFMSVYSSAVDTIFVCYAEDPEM 329 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 233444556788999999999999876543
No 11
>PF13197 DUF4013: Protein of unknown function (DUF4013)
Probab=51.95 E-value=1.5e+02 Score=25.26 Aligned_cols=54 Identities=19% Similarity=0.320 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhHHHHhhh-hhhhHHHHHHHHHH
Q 037643 101 TYLILLLVLSILSTVTIAYSTASIYKTKDTTFKKAAAVVP-ELWKPVLITFLLVF 154 (332)
Q Consensus 101 ~yl~~~~~~slls~aaiv~av~~~y~g~~~t~~~~l~~~~-~~wk~ll~T~l~~~ 154 (332)
...+...+.+++..++...-+.+---++-.++++..+..+ +.|.+.+.+++...
T Consensus 99 l~~i~~i~~~~~~~~a~~~~a~~~~~~~af~~~~i~~~i~~~~~~~~l~~~i~~~ 153 (169)
T PF13197_consen 99 LAIILSIIFGLLFPIALARYARTGSFSAAFNFKEIFKMISSIGWLGYLIAYIVVI 153 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444445555555555555442222223567787777765 56777766664433
No 12
>PF15069 FAM163: FAM163 family
Probab=43.42 E-value=36 Score=28.96 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=11.5
Q ss_pred HHHHHHHHhhccccccc
Q 037643 291 LVAQTVIYFVCKSYHDE 307 (332)
Q Consensus 291 ~v~~tV~Y~~CK~~~~e 307 (332)
++.+=.-||-||+...|
T Consensus 25 LCYCRLQYYCCKK~~se 41 (143)
T PF15069_consen 25 LCYCRLQYYCCKKNESE 41 (143)
T ss_pred HHHHhhHHHHhhccCCc
Confidence 44555778899987443
No 13
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=40.22 E-value=45 Score=21.84 Aligned_cols=25 Identities=12% Similarity=0.357 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHhhccccccc
Q 037643 283 KLMMVLIGLVAQTVIYFVCKSYHDE 307 (332)
Q Consensus 283 ~~~~~l~~~v~~tV~Y~~CK~~~~e 307 (332)
-+++.-+..++.+++||-|.-++++
T Consensus 10 v~V~vg~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 10 VAVVVGMAIIIICMFYYACCYKKHR 34 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3445556677888999999888775
No 14
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=31.90 E-value=15 Score=37.03 Aligned_cols=49 Identities=14% Similarity=0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccchhhhccCCccccccccc
Q 037643 280 VLLKLMMVLIGLVAQTVIYFVCKSYHDENFEDLYDAADDQKLSLDVQYQ 328 (332)
Q Consensus 280 ~~l~~~~~l~~~v~~tV~Y~~CK~~~~e~id~~~~~~~~~y~~l~~~~~ 328 (332)
..+.+.+.++-.++..+.++.||.+....-++..+.....|.++|++|.
T Consensus 356 ~vVlgvavlivVv~viv~vc~~~rrrR~~~~~~~~~~~~~YtsLPtNE~ 404 (439)
T PF02480_consen 356 GVVLGVAVLIVVVGVIVWVCLRCRRRRRQRDKILNPFSPVYTSLPTNEP 404 (439)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhheeeeehhcccccccccCcCCCccccCCCCCc
Confidence 3344444444445555555555544433333455677778999999884
No 15
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=31.89 E-value=1e+02 Score=20.80 Aligned_cols=10 Identities=10% Similarity=0.172 Sum_probs=7.1
Q ss_pred Cccccccccc
Q 037643 319 QKLSLDVQYQ 328 (332)
Q Consensus 319 ~y~~l~~~~~ 328 (332)
++..+|++|.
T Consensus 40 ~aa~lpl~dd 49 (49)
T PF05545_consen 40 EAANLPLDDD 49 (49)
T ss_pred HHHccCccCC
Confidence 4667888874
No 16
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=31.63 E-value=2.1e+02 Score=20.92 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhhhcCC--CCChhHHHHhhhhhhhHHHH
Q 037643 111 ILSTVTIAYSTASIYKTK--DTTFKKAAAVVPELWKPVLI 148 (332)
Q Consensus 111 lls~aaiv~av~~~y~g~--~~t~~~~l~~~~~~wk~ll~ 148 (332)
..+++|..+++.....+| ....++.++..++.||+-..
T Consensus 22 gPA~~Al~~~~~~~~~~~~~~~~~~~f~~~fk~nf~~~~~ 61 (77)
T PF04854_consen 22 GPATAALYYVVRKWVRDEEDSYLFRDFWRAFKQNFKQSLL 61 (77)
T ss_pred HHHHHHHHHHHHHHHcCCccChHHHHHHHHHHHHHHHHHH
Confidence 446777777777777776 45667777778777776533
No 17
>PF13197 DUF4013: Protein of unknown function (DUF4013)
Probab=30.62 E-value=3.4e+02 Score=23.06 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCChhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 037643 107 LVLSILSTVTIAYSTASIYKTKDTTFKKAAAVVPELWKPVLITFLLVFAVTFVYDYILG 165 (332)
Q Consensus 107 ~~~slls~aaiv~av~~~y~g~~~t~~~~l~~~~~~wk~ll~T~l~~~ll~~~~~~~~~ 165 (332)
.+..++...-..-.....-.|++-+++| -+.|++++..-+..+++.+.|...+.
T Consensus 12 ii~~~~~~GY~~~v~~~~~~g~~~~lP~-----~~~~~~l~~~G~~~~ii~ivy~i~~~ 65 (169)
T PF13197_consen 12 IIGLFLLLGYLVRVIRSTAIGGSDPLPE-----FNDWGELFVDGLKAFIISIVYSIPPI 65 (169)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCC-----chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444454444444444454333333 12466677777777777777776655
No 18
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=28.45 E-value=1.7e+02 Score=22.68 Aligned_cols=17 Identities=6% Similarity=0.241 Sum_probs=8.0
Q ss_pred hhcccchHHHHHHHHHH
Q 037643 231 FLKGKMKDSVAVFVVLL 247 (332)
Q Consensus 231 L~kG~~~~~l~l~l~~~ 247 (332)
|.|-|++.++.+.+++.
T Consensus 10 L~r~r~r~~~~l~~i~l 26 (91)
T PF04341_consen 10 LVRRRRRLAWPLSAIFL 26 (91)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555555444443
No 19
>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.31 E-value=3.5e+02 Score=24.10 Aligned_cols=31 Identities=6% Similarity=0.263 Sum_probs=20.8
Q ss_pred CCCCChhHHHHhhhhhhhHHHHHHHHHHHHH
Q 037643 127 TKDTTFKKAAAVVPELWKPVLITFLLVFAVT 157 (332)
Q Consensus 127 g~~~t~~~~l~~~~~~wk~ll~T~l~~~ll~ 157 (332)
.+|-++.++.++++++...-=.-+.....+.
T Consensus 50 s~P~s~s~a~sRi~~Nl~yF~~NY~~iv~~~ 80 (187)
T KOG3142|consen 50 SRPRSLSDATSRIKRNLSYFRVNYVIIVAIL 80 (187)
T ss_pred CCCccHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4688999998888777766555554443333
No 20
>PF06975 DUF1299: Protein of unknown function (DUF1299); InterPro: IPR010725 This entry represents a conserved region approximately 50 residues long within a number of proteins of unknown function that seem to be specific to Arabidopsis thaliana. Note that many proteins contain multiple copies of this region.
Probab=20.70 E-value=50 Score=22.05 Aligned_cols=13 Identities=15% Similarity=-0.066 Sum_probs=10.0
Q ss_pred CccccccccccCC
Q 037643 319 QKLSLDVQYQKLT 331 (332)
Q Consensus 319 ~y~~l~~~~~~~~ 331 (332)
.|+.|+-+|++-|
T Consensus 12 ayvilsdde~ngt 24 (47)
T PF06975_consen 12 AYVILSDDEDNGT 24 (47)
T ss_pred heeeccccccCCc
Confidence 3999999887654
Done!