Query 037643
Match_columns 332
No_of_seqs 108 out of 189
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 04:20:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037643.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037643hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ews_A RK-1 defensin, alpha-de 54.6 2.6 8.8E-05 24.7 -0.0 24 299-322 3-28 (32)
2 3hd6_A Ammonium transporter RH 22.9 88 0.003 30.7 5.0 46 283-328 403-448 (490)
3 3tx3_A Uncharacterized protein 19.0 4.7E+02 0.016 22.9 17.8 20 10-30 10-29 (249)
4 3arc_M Photosystem II reaction 10.0 3.4E+02 0.012 16.7 3.4 19 27-45 4-22 (36)
5 3b9w_A Ammonium transporter fa 7.9 1.3E+03 0.044 21.7 8.6 24 281-304 324-347 (407)
6 3pz8_A Segment polarity protei 7.1 1E+02 0.0034 23.9 0.1 32 298-330 48-79 (106)
7 2kgn_A Protein STE5; MAPKKK, S 7.0 84 0.0029 17.4 -0.3 8 231-238 2-9 (26)
8 2l9u_A Receptor tyrosine-prote 6.8 4.9E+02 0.017 15.8 3.7 28 279-306 10-37 (40)
9 4b6m_A Tubulin-specific chaper 6.7 88 0.003 23.1 -0.4 12 296-307 56-67 (84)
10 1whk_A 1700024K14RIK, riken cD 6.1 1.1E+02 0.0036 22.9 -0.3 12 296-307 62-73 (91)
No 1
>1ews_A RK-1 defensin, alpha-defisin; alpha defensin, triple-stranded beta-sheet, antimicrobial protein; NMR {Oryctolagus cuniculus} SCOP: g.9.1.1
Probab=54.61 E-value=2.6 Score=24.66 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=19.9
Q ss_pred hhcccccc--ccccchhhhccCCccc
Q 037643 299 FVCKSYHD--ENFEDLYDAADDQKLS 322 (332)
Q Consensus 299 ~~CK~~~~--e~id~~~~~~~~~y~~ 322 (332)
++||++.+ |.||..++.+...|+.
T Consensus 3 csckkycdpwevidgscglfnskyic 28 (32)
T 1ews_A 3 CSCKKYCDPWEVIDGSCGLFNSKYIC 28 (32)
T ss_dssp SEEESSCCTTEEEEECCSSSSCSEEE
T ss_pred cccccccChhheeccccccccceeEE
Confidence 47999976 7899999988888863
No 2
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=22.89 E-value=88 Score=30.72 Aligned_cols=46 Identities=9% Similarity=-0.008 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccccchhhhccCCccccccccc
Q 037643 283 KLMMVLIGLVAQTVIYFVCKSYHDENFEDLYDAADDQKLSLDVQYQ 328 (332)
Q Consensus 283 ~~~~~l~~~v~~tV~Y~~CK~~~~e~id~~~~~~~~~y~~l~~~~~ 328 (332)
.+....+..+...+.++-.|....-+++++.|.+|.||-..|.||.
T Consensus 403 v~~~~~~a~v~~~ii~~iLk~~~~lRvs~e~e~~g~d~we~p~~~~ 448 (490)
T 3hd6_A 403 LLVTLAMALMGGIIVGLILRLPFWGQPSDENCFEDAVYWEMPEGNS 448 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTSCCCCTTSTTCGGGTSCCCTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHhCCCceeecCcccc
Confidence 4445667778888889999988777777777777878999998885
No 3
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=19.01 E-value=4.7e+02 Score=22.88 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=13.6
Q ss_pred CCCHHHHHHHHHHhHhhChhh
Q 037643 10 RLGFFGILKESFKLIFSHKKL 30 (332)
Q Consensus 10 ~lg~~~Il~Es~~i~~~n~~~ 30 (332)
+.+-.+-+.++++.+ ++|++
T Consensus 10 ~~~G~~~~~~g~~~i-~~p~l 29 (249)
T 3tx3_A 10 SNSGLAYIGRGLELI-RTKGL 29 (249)
T ss_dssp CSCSTTHHHHHHHHH-TSTTT
T ss_pred hhHHHHHHHHHHHHH-cCchH
Confidence 344467788999998 55553
No 4
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=10.00 E-value=3.4e+02 Score=16.66 Aligned_cols=19 Identities=11% Similarity=0.195 Sum_probs=14.8
Q ss_pred ChhhHHHHHHHHHHHHHHH
Q 037643 27 HKKLFTQISQSLLIPISII 45 (332)
Q Consensus 27 n~~~F~~i~~ll~lPls~l 45 (332)
|.--|....+.+..|..|+
T Consensus 4 n~l~fiAt~Lfi~iPt~FL 22 (36)
T 3arc_M 4 NQLGLIATALFVLVPSVFL 22 (36)
T ss_dssp CTTHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 3344788888999999887
No 5
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=7.87 E-value=1.3e+03 Score=21.73 Aligned_cols=24 Identities=8% Similarity=-0.052 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Q 037643 281 LLKLMMVLIGLVAQTVIYFVCKSY 304 (332)
Q Consensus 281 ~l~~~~~l~~~v~~tV~Y~~CK~~ 304 (332)
.-......+..+...+.++-.|.|
T Consensus 324 ~g~~~~~~~s~v~~~i~~~il~~r 347 (407)
T 3b9w_A 324 TGIGITLALALIGGVIAGALIKLT 347 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 333444566677777788877774
No 6
>3pz8_A Segment polarity protein dishevelled homolog DVL-; DIX domain, oligomerization, signaling protein; 2.87A {Mus musculus}
Probab=7.08 E-value=1e+02 Score=23.85 Aligned_cols=32 Identities=16% Similarity=0.125 Sum_probs=21.9
Q ss_pred HhhccccccccccchhhhccCCccccccccccC
Q 037643 298 YFVCKSYHDENFEDLYDAADDQKLSLDVQYQKL 330 (332)
Q Consensus 298 Y~~CK~~~~e~id~~~~~~~~~y~~l~~~~~~~ 330 (332)
-|.||+...|. ....||-.||-.+||--|||+
T Consensus 48 ryfFK~~d~df-gvVkeEI~dD~~~LP~~eGkI 79 (106)
T 3pz8_A 48 KFFFKSMDQDF-GVVKEEIFDDNAKLPCFNGRV 79 (106)
T ss_dssp CCEEEEEETTT-EEEEEECCCTTCBCCCBTTBE
T ss_pred eEEEeecCccc-CeeeeEecCCcccccccCCEE
Confidence 35577776553 334456666788999999986
No 7
>2kgn_A Protein STE5; MAPKKK, STE11 SAM, STE50 SAM, cytoplasm, pheromone response, phosphoprotein, signaling protein; NMR {Synthetic} PDB: 2l4u_A
Probab=7.02 E-value=84 Score=17.39 Aligned_cols=8 Identities=25% Similarity=0.314 Sum_probs=4.4
Q ss_pred hhcccchH
Q 037643 231 FLKGKMKD 238 (332)
Q Consensus 231 L~kG~~~~ 238 (332)
|.||++|+
T Consensus 2 lsrgkkwt 9 (26)
T 2kgn_A 2 LSRGKKWT 9 (26)
T ss_dssp HHHHGGGT
T ss_pred ccchhHHH
Confidence 44566654
No 8
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=6.78 E-value=4.9e+02 Score=15.85 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccc
Q 037643 279 LVLLKLMMVLIGLVAQTVIYFVCKSYHD 306 (332)
Q Consensus 279 ~~~l~~~~~l~~~v~~tV~Y~~CK~~~~ 306 (332)
+....+++++|-..-.|..|..-|..|+
T Consensus 10 lt~i~gl~vif~~lg~tflywrgrrhhh 37 (40)
T 2l9u_A 10 LTVIAGLVVIFMMLGGTFLYWRGRRHHH 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhCceeEEEccccccc
Confidence 4455566677777788888888777665
No 9
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=6.66 E-value=88 Score=23.07 Aligned_cols=12 Identities=17% Similarity=0.310 Sum_probs=9.4
Q ss_pred HHHhhccccccc
Q 037643 296 VIYFVCKSYHDE 307 (332)
Q Consensus 296 V~Y~~CK~~~~e 307 (332)
+=||+|+..|+-
T Consensus 56 ~rYF~C~~~~G~ 67 (84)
T 4b6m_A 56 TRVFQCQPNYGG 67 (84)
T ss_dssp EESSCCCTTSEE
T ss_pred EEEEecCCCeEE
Confidence 459999988873
No 10
>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=6.06 E-value=1.1e+02 Score=22.93 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=9.0
Q ss_pred HHHhhccccccc
Q 037643 296 VIYFVCKSYHDE 307 (332)
Q Consensus 296 V~Y~~CK~~~~e 307 (332)
+=||+|+..|+-
T Consensus 62 ~rYF~C~~~~G~ 73 (91)
T 1whk_A 62 KRYFTCKPNYGV 73 (91)
T ss_dssp EECCCCSTTCCC
T ss_pred EEEeecCCCeEE
Confidence 458999988763
Done!