BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037646
(377 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T92|A Chain A, Crystal Structure Of The Taz2:cEBPEPSILON-Tad Chimera
Protein
Length = 121
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 19/114 (16%)
Query: 244 LQLYEAMEALVHI--CRDGCKTIGPHDKDFKEDQAPCNYTACKGLELLVRHFAGCRLRIP 301
L + A+++LVH CR+ A C+ +C+ ++ +V+H GC+ +
Sbjct: 11 LSIQRAIQSLVHAAQCRN----------------ANCSLPSCQKMKRVVQHTKGCKRKTN 54
Query: 302 GKCSHCKRMWQLLELHSRLCDDSDVCRVPLCRNFKERIKKQSKKDEIKWKKLVE 355
G C CK++ L H++ C ++ C VP C N K+++++Q + I +E
Sbjct: 55 GGCPICKQLIALAAYHAKHCQENK-CPVPFCLNIKQKLRQQQLEASIDLSAYIE 107
>pdb|2K8F|A Chain A, Structural Basis For The Regulation Of P53 Function By
P300
Length = 90
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 19/97 (19%)
Query: 244 LQLYEAMEALVHI--CRDGCKTIGPHDKDFKEDQAPCNYTACKGLELLVRHFAGCRLRIP 301
L + A+++LVH CR+ A C+ +C+ ++ +V+H GC+ +
Sbjct: 11 LSIQRAIQSLVHAAQCRN----------------ANCSLPSCQKMKRVVQHTKGCKRKTN 54
Query: 302 GKCSHCKRMWQLLELHSRLCDDSDVCRVPLCRNFKER 338
G C CK++ L H++ C ++ C VP C N K++
Sbjct: 55 GGCPICKQLIALAAYHAKHCQENK-CPVPFCLNIKQK 90
>pdb|2KA6|A Chain A, Nmr Structure Of The Cbp-Taz2STAT1-Tad Complex
pdb|2KJE|A Chain A, Nmr Structure Of Cbp Taz2 And Adenoviral E1a Complex
Length = 92
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 15/99 (15%)
Query: 244 LQLYEAMEALVHICRDGCKTIGPHDKDFKEDQAPCNYTACKGLELLVRHFAGCRLRIPGK 303
L + +++LVH C+ C+ A C+ +C+ ++ +V+H GC+ + G
Sbjct: 8 LSIQRCIQSLVHACQ--CRN------------ANCSLPSCQKMKRVVQHTKGCKRKTNGG 53
Query: 304 CSHCKRMWQLLELHSRLCDDSDVCRVPLCRNFKERIKKQ 342
C CK++ L H++ C ++ C VP C N K ++++Q
Sbjct: 54 CPVCKQLIALCCYHAKHCQENK-CPVPFCLNIKHKLRQQ 91
>pdb|3IO2|A Chain A, Crystal Structure Of The Taz2 Domain Of P300
Length = 114
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 19/93 (20%)
Query: 244 LQLYEAMEALVHI--CRDGCKTIGPHDKDFKEDQAPCNYTACKGLELLVRHFAGCRLRIP 301
L + A+++LVH CR+ A C+ +C+ ++ +V+H GC+ +
Sbjct: 11 LSIQRAIQSLVHAAQCRN----------------ANCSLPSCQKMKRVVQHTKGCKRKTN 54
Query: 302 GKCSHCKRMWQLLELHSRLCDDSDVCRVPLCRN 334
G C CK++ L H++ C ++ C VP C N
Sbjct: 55 GGCPICKQLIALAAYHAKHCQENK-CPVPFCLN 86
>pdb|1F81|A Chain A, Solution Structure Of The Taz2 Domain Of The
Transcriptional Adaptor Protein Cbp
Length = 88
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 15/95 (15%)
Query: 244 LQLYEAMEALVHICRDGCKTIGPHDKDFKEDQAPCNYTACKGLELLVRHFAGCRLRIPGK 303
L + +++LVH C+ C+ A C+ +C+ ++ +V+H GC+ + G
Sbjct: 9 LSIQRCIQSLVHACQ--CRN------------ANCSLPSCQKMKRVVQHTKGCKRKTNGG 54
Query: 304 CSHCKRMWQLLELHSRLCDDSDVCRVPLCRNFKER 338
C CK++ L H++ C ++ C VP C N K +
Sbjct: 55 CPVCKQLIALCCYHAKHCQENK-CPVPFCLNIKHK 88
>pdb|3P57|P Chain P, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2 On
Dna
Length = 112
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 244 LQLYEAMEALVHICRDGCKTIGPHDKDFKEDQAPCNYTACKGLELLVRHFAGCRLRIPGK 303
L + +++LVH C+ C+ A C+ +C+ ++ +V+H GC+ + G
Sbjct: 10 LSIQRCIQSLVHACQ--CRN------------ANCSLPSCQKMKRVVQHTKGCKRKTNGG 55
Query: 304 CSHCKRMWQLLELHSRLCDDSDVCRVPLCRNF 335
C CK++ L H++ C ++ C VP C N
Sbjct: 56 CPICKQLIALCCYHAKHCQENK-CPVPFCLNI 86
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 3/108 (2%)
Query: 77 AHANVLGMASPVMKGMLNQSKGHGRWRSLSIHGVPQDAVRVFIRFLYSSCSEKADMEDYX 136
AH +L SPV M + + I+ V + + + F+Y+ + +++
Sbjct: 39 AHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYT--GKAPNLDKMA 96
Query: 137 XXXXXXXXXXXXPQLKRECERQLEHGLLSTENVVDIFQLALLCDAPRL 184
+LK CE L LS EN +I LA L A +L
Sbjct: 97 DDLLAAADKYALERLKVMCEDALCSN-LSVENAAEILILADLHSADQL 143
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 3/108 (2%)
Query: 77 AHANVLGMASPVMKGMLNQSKGHGRWRSLSIHGVPQDAVRVFIRFLYSSCSEKADMEDYX 136
AH +L SPV M + + I+ V + + + F+Y+ + +++
Sbjct: 188 AHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYT--GKAPNLDKMA 245
Query: 137 XXXXXXXXXXXXPQLKRECERQLEHGLLSTENVVDIFQLALLCDAPRL 184
+LK CE L LS EN +I LA L A +L
Sbjct: 246 DDLLAAADKYALERLKVMCEDALCSN-LSVENAAEILILADLHSADQL 292
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
Length = 658
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 329 VPLCRNFKERIKKQSKKDEIKWKKLVE-KMLRTKRIGGANFF 369
V LCRN KERI+++ K+ +++ L ++ +T G FF
Sbjct: 538 VDLCRNVKERIRRECKEKGVQFPPLSTCRVTQTYDAGACIFF 579
>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|B Chain B, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|C Chain C, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|D Chain D, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3NTJ|A Chain A, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|B Chain B, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|C Chain C, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|D Chain D, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
Length = 422
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 301 PGKCSHCKRMWQLLELHSRLCDDSDVCRVPLCRNFKERIKKQSKKDEIKWKKLV 354
P + C ++L ++ +LC+++D P +N KE++K E++ K L+
Sbjct: 297 PLAAAICVEALKVL-INEKLCENADKLGAPFLQNLKEQLKDSKVVREVRGKGLL 349
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,148,986
Number of Sequences: 62578
Number of extensions: 369039
Number of successful extensions: 772
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 760
Number of HSP's gapped (non-prelim): 14
length of query: 377
length of database: 14,973,337
effective HSP length: 100
effective length of query: 277
effective length of database: 8,715,537
effective search space: 2414203749
effective search space used: 2414203749
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)