Query 037646
Match_columns 377
No_of_seqs 393 out of 2021
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 03:02:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037646.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037646hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1778 CREB binding protein/P 100.0 3.3E-38 7.2E-43 297.3 8.8 291 64-364 27-318 (319)
2 PHA02713 hypothetical protein; 100.0 3.8E-31 8.3E-36 272.6 19.8 189 41-234 4-206 (557)
3 KOG4441 Proteins containing BT 100.0 1.7E-30 3.7E-35 267.4 20.9 204 38-245 12-227 (571)
4 PHA02790 Kelch-like protein; P 100.0 1.1E-29 2.4E-34 257.9 16.1 171 51-227 11-193 (480)
5 PHA03098 kelch-like protein; P 100.0 1.1E-28 2.5E-33 254.0 18.5 174 59-239 6-192 (534)
6 KOG4350 Uncharacterized conser 99.9 1.9E-27 4.1E-32 224.1 12.2 180 45-226 27-217 (620)
7 KOG2075 Topoisomerase TOP1-int 99.9 5.6E-21 1.2E-25 184.4 17.1 191 39-232 91-298 (521)
8 KOG4591 Uncharacterized conser 99.8 1.2E-20 2.7E-25 163.0 11.1 166 40-210 44-211 (280)
9 PF00651 BTB: BTB/POZ domain; 99.8 9E-20 2E-24 148.3 10.9 107 53-161 1-109 (111)
10 smart00551 ZnF_TAZ TAZ zinc fi 99.8 1.2E-19 2.5E-24 137.7 8.0 76 241-333 2-79 (79)
11 KOG4682 Uncharacterized conser 99.7 1.1E-16 2.4E-21 151.6 11.8 172 50-226 57-244 (488)
12 smart00225 BTB Broad-Complex, 99.7 2.6E-16 5.7E-21 121.6 9.2 90 64-156 1-90 (90)
13 KOG0783 Uncharacterized conser 99.6 1.4E-15 3E-20 154.6 7.9 148 60-208 708-859 (1267)
14 PF02135 zf-TAZ: TAZ zinc fing 99.2 1.2E-11 2.7E-16 93.6 4.0 72 245-332 2-75 (75)
15 KOG0783 Uncharacterized conser 98.7 3.1E-08 6.6E-13 102.0 6.1 109 49-158 541-684 (1267)
16 KOG0511 Ankyrin repeat protein 98.6 1.5E-07 3.3E-12 89.5 8.6 137 72-211 300-445 (516)
17 KOG2838 Uncharacterized conser 98.5 1.5E-07 3.3E-12 85.9 6.2 107 42-149 110-219 (401)
18 KOG2838 Uncharacterized conser 98.4 4.2E-07 9.1E-12 83.1 5.7 127 46-173 219-397 (401)
19 PF07707 BACK: BTB And C-termi 98.2 1.3E-06 2.8E-11 69.7 3.7 69 169-237 1-81 (103)
20 KOG2716 Polymerase delta-inter 98.0 2.7E-05 5.9E-10 70.8 9.6 95 65-161 7-103 (230)
21 KOG1987 Speckle-type POZ prote 97.9 7.5E-06 1.6E-10 78.2 3.5 136 72-210 109-249 (297)
22 smart00875 BACK BTB And C-term 97.9 4E-05 8.7E-10 60.4 6.8 62 169-230 1-74 (101)
23 KOG3473 RNA polymerase II tran 97.4 0.0007 1.5E-08 52.5 7.6 80 65-147 19-111 (112)
24 PF02214 BTB_2: BTB/POZ domain 97.4 0.00016 3.4E-09 56.9 3.4 88 65-155 1-94 (94)
25 smart00512 Skp1 Found in Skp1 97.3 0.00099 2.2E-08 53.5 7.5 61 64-125 3-64 (104)
26 PF11822 DUF3342: Domain of un 97.2 0.0013 2.7E-08 62.6 7.4 115 73-197 14-130 (317)
27 PF03931 Skp1_POZ: Skp1 family 97.1 0.0029 6.2E-08 45.8 7.2 58 64-124 2-59 (62)
28 KOG1724 SCF ubiquitin ligase, 96.9 0.0082 1.8E-07 52.0 9.2 98 65-164 7-127 (162)
29 KOG0511 Ankyrin repeat protein 96.5 0.002 4.3E-08 61.9 3.0 87 62-152 149-235 (516)
30 KOG2714 SETA binding protein S 95.9 0.034 7.4E-07 54.6 8.1 85 65-153 13-102 (465)
31 COG5201 SKP1 SCF ubiquitin lig 94.7 0.28 6E-06 40.4 8.6 99 63-165 2-123 (158)
32 KOG1665 AFH1-interacting prote 94.4 0.12 2.5E-06 46.7 6.4 109 64-175 10-128 (302)
33 KOG2715 Uncharacterized conser 92.1 0.5 1.1E-05 40.8 6.4 96 62-161 20-120 (210)
34 PF02135 zf-TAZ: TAZ zinc fing 86.0 1.2 2.6E-05 33.3 3.9 54 285-340 5-60 (75)
35 smart00551 ZnF_TAZ TAZ zinc fi 83.7 4 8.6E-05 31.0 5.8 52 286-340 10-63 (79)
36 PF01466 Skp1: Skp1 family, di 83.1 1.4 3E-05 33.2 3.2 44 134-178 14-60 (78)
37 KOG3840 Uncharaterized conserv 80.3 8.9 0.00019 36.5 7.9 89 60-150 93-186 (438)
38 KOG2723 Uncharacterized conser 72.9 8.3 0.00018 35.2 5.5 96 62-158 7-105 (221)
39 PF11822 DUF3342: Domain of un 61.7 3.3 7.1E-05 39.8 0.7 41 163-203 71-111 (317)
40 PF07707 BACK: BTB And C-termi 60.9 32 0.00069 26.4 6.2 60 137-197 2-75 (103)
41 PF00651 BTB: BTB/POZ domain; 58.6 12 0.00027 29.2 3.4 30 166-195 81-110 (111)
42 KOG2075 Topoisomerase TOP1-int 55.3 18 0.00039 36.6 4.6 45 163-210 184-228 (521)
43 KOG2675 Adenylate cyclase-asso 47.7 27 0.00059 34.9 4.4 6 15-20 236-241 (480)
44 PHA02713 hypothetical protein; 46.1 28 0.00061 36.4 4.6 45 152-196 79-123 (557)
45 PF02519 Auxin_inducible: Auxi 37.2 1.3E+02 0.0028 23.8 6.1 56 64-122 40-99 (100)
46 TIGR02183 GRXA Glutaredoxin, G 36.4 23 0.0005 26.8 1.7 17 302-318 8-24 (86)
47 smart00875 BACK BTB And C-term 34.3 85 0.0018 23.6 4.7 25 137-161 2-26 (101)
48 PHA03098 kelch-like protein; P 33.1 40 0.00086 34.8 3.3 33 163-195 72-104 (534)
49 PF00462 Glutaredoxin: Glutare 27.2 47 0.001 22.9 1.9 15 302-316 7-21 (60)
50 PRK11200 grxA glutaredoxin 1; 26.6 45 0.00097 25.0 1.8 15 302-316 9-23 (85)
51 PF02637 GatB_Yqey: GatB domai 25.7 2.1E+02 0.0045 24.0 6.0 71 110-200 40-110 (148)
52 KOG4682 Uncharacterized conser 25.6 49 0.0011 32.9 2.2 28 134-161 173-200 (488)
53 PRK00391 rpsR 30S ribosomal pr 25.2 74 0.0016 24.1 2.7 23 347-369 55-77 (79)
54 cd03029 GRX_hybridPRX5 Glutare 25.0 51 0.0011 23.7 1.8 15 302-316 9-23 (72)
55 TIGR00165 S18 ribosomal protei 23.9 84 0.0018 23.2 2.7 22 348-369 47-68 (70)
56 cd03419 GRX_GRXh_1_2_like Glut 23.8 54 0.0012 23.9 1.8 18 302-319 8-25 (82)
57 cd03027 GRX_DEP Glutaredoxin ( 23.5 55 0.0012 23.6 1.7 16 302-317 9-24 (73)
58 KOG4327 mRNA splicing protein 23.1 1E+02 0.0022 27.6 3.4 10 14-23 169-178 (218)
59 TIGR02425 decarb_PcaC 4-carbox 22.8 4.3E+02 0.0092 21.6 10.0 79 106-185 27-109 (123)
60 TIGR02190 GlrX-dom Glutaredoxi 22.8 59 0.0013 24.0 1.8 14 302-315 16-29 (79)
61 TIGR02189 GlrX-like_plant Glut 21.4 64 0.0014 25.2 1.8 16 302-317 16-31 (99)
62 PHA02790 Kelch-like protein; P 21.1 1.3E+02 0.0029 30.6 4.5 32 128-161 119-150 (480)
63 PF09593 Pathogen_betaC1: Beta 21.1 98 0.0021 25.3 2.8 57 71-130 20-80 (117)
64 PF03000 NPH3: NPH3 family; I 20.5 3.2E+02 0.0069 25.6 6.5 64 110-176 68-132 (258)
65 COG0695 GrxC Glutaredoxin and 20.4 69 0.0015 24.0 1.7 14 302-315 9-22 (80)
66 TIGR02180 GRX_euk Glutaredoxin 20.3 70 0.0015 23.3 1.8 17 302-318 7-23 (84)
67 COG3357 Predicted transcriptio 20.1 49 0.0011 25.7 0.8 19 293-311 68-86 (97)
No 1
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=100.00 E-value=3.3e-38 Score=297.29 Aligned_cols=291 Identities=48% Similarity=0.790 Sum_probs=249.6
Q ss_pred cEEEEecCCeEEehhHHHHhccCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHHHhhCCCccCCChhhHHHHHHHHH
Q 037646 64 DVTIYTDYNGIIYAHANVLGMASPVMKGMLNQSKGHGRWRSLSIHGVPQDAVRVFIRFLYSSCSEKADMEDYVLHLLVLS 143 (377)
Q Consensus 64 DV~~~v~~g~~~~aHr~ILaa~S~~F~~mf~~~~~e~~~~~I~i~~v~~~af~~lL~flYtg~i~~~~~~~~v~~Ll~lA 143 (377)
|+..+..++..+++|+.+|+..|+.|..+....-..+....+.+.+++..++..+.+++|.+ ++..++......++.+.
T Consensus 27 ~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~ 105 (319)
T KOG1778|consen 27 DVEIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALS 105 (319)
T ss_pred chhhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhhhHHHHHHHHHHhhh
Confidence 44555546779999999999999999988866544445567888899999999999999999 66666667888999999
Q ss_pred hccCchhHHHHHHHHHhhcCCChHHHHHHHHHHhcCCChHHHHHHHHHHHHhHHHHhCchhHhhccccCCCcHHHHHHHH
Q 037646 144 HVFVVPQLKRECERQLEHGLLSTENVVDIFQLALLCDAPRLSLVCHRMILKNFKVVSDSEGWKAMMQSHPVLEKELVESV 223 (377)
Q Consensus 144 ~~y~v~~L~~~c~~~L~~~~l~~~n~~~il~~A~~~~~~~L~~~c~~~I~~~f~~v~~~~~F~~L~~~~~~l~~evl~~~ 223 (377)
+.|.++.++..|...+..+.++..+++.++..+..|+.+.|...+...+...|....+++.|..+....+.+++ ....
T Consensus 106 ~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~~~c~~c~~~~--~~~~ 183 (319)
T KOG1778|consen 106 HVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFAYTCPICKLEV--LTAW 183 (319)
T ss_pred hhhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCceeeecCcccccc--cccc
Confidence 99999999999999998867899999999999999999999999999999999999999999888776666655 2221
Q ss_pred HccccchHHHHHHHHHHHHHHhHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCcchhhHhHHHHHHhhhccCCcCCCC
Q 037646 224 LDEDHKQKERIRKLKERKIYLQLYEAMEALVHICRDGCKTIGPHDKDFKEDQAPCNYTACKGLELLVRHFAGCRLRIPGK 303 (377)
Q Consensus 224 ~~~~~~~~~r~~~~~e~~~y~ql~~~me~L~h~~~~~c~~~~p~~~~~~~~~~~c~~~~c~~l~~l~~H~~~c~~r~~~~ 303 (377)
.........+.+...++..|.|+.++|++ |.++|.+++|..+.+....++|+|++|.+++.+++|+..|++| ||
T Consensus 184 ~c~~~~d~d~~~~~~~k~~h~h~~~~~~~----~~~~~~~~~~~~~~i~~~~~~C~~~~C~~~k~lirH~~~Ck~R--~g 257 (319)
T KOG1778|consen 184 HCEVCPDYDRCRACEEKPLHPHLYEAMES----CTDGCATIGPRNKSINRRDANCSYPSCNGLKRLIRHFRGCKLR--GG 257 (319)
T ss_pred ccccCCchhhhhcccCCCCCCcchhcccc----cccccccccchhhhhccCCCCCCCchhHHHHHHHHHHHHHHhc--cC
Confidence 11133345555555566679999888877 7788999999999997667999999999999999999999999 99
Q ss_pred ChhHHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHcch-hHHHHHHHHHHHHHHhhhc
Q 037646 304 CSHCKRMWQLLELHSRLCDDSDVCRVPLCRNFKERIKKQSKK-DEIKWKKLVEKMLRTKRIG 364 (377)
Q Consensus 304 c~~c~~~~~l~~~h~~~c~~~~~c~vp~c~~~k~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 364 (377)
|++||+||||++|||++|++++ |+||+|+++|+++++++++ ++.+|++++++|..+++++
T Consensus 258 C~iCk~m~~L~~lha~~c~~~~-C~vP~c~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T KOG1778|consen 258 CPICKRLWQLLELHARHCDDSK-CKVPLCRNLKQKLEKQQKQADERRWKLLVRRVAGTKADG 318 (319)
T ss_pred CchHHHHHHHHHHHHHHccccc-CCCCCCccHHHHHHHHHhhhhhHHHHHHHHHHHhhhccc
Confidence 9999999999999999999999 9999999999999999887 8899999999999887764
No 2
>PHA02713 hypothetical protein; Provisional
Probab=99.97 E-value=3.8e-31 Score=272.65 Aligned_cols=189 Identities=14% Similarity=0.177 Sum_probs=172.9
Q ss_pred CCcccHHHHHHHHHHHHhcCCCccEEEEecCCeEEehhHHHHhccCHHHHHhhcCCCCCCC-cceEEecCCCHHHHHHHH
Q 037646 41 GYSCVSTAAKDLWERLFDSGYKADVTIYTDYNGIIYAHANVLGMASPVMKGMLNQSKGHGR-WRSLSIHGVPQDAVRVFI 119 (377)
Q Consensus 41 ~~~~~~~~l~~~l~~l~~~~~~sDV~~~v~~g~~~~aHr~ILaa~S~~F~~mf~~~~~e~~-~~~I~i~~v~~~af~~lL 119 (377)
.+..|+..+++.|++|++++.+|||+|.+++|+.|+|||.|||++|+||++||++++.|.. ..+|.|.++++++|+.+|
T Consensus 4 ~~~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll 83 (557)
T PHA02713 4 DDIKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIV 83 (557)
T ss_pred chhhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHH
Confidence 4567899999999999999999999999954899999999999999999999999999764 788999999999999999
Q ss_pred HHhhCCCccCCChhhHHHHHHHHHhccCchhHHHHHHHHHhhcCCChHHHHHHHHHHhcCCChHHHHHHHHHHHHhHHHH
Q 037646 120 RFLYSSCSEKADMEDYVLHLLVLSHVFVVPQLKRECERQLEHGLLSTENVVDIFQLALLCDAPRLSLVCHRMILKNFKVV 199 (377)
Q Consensus 120 ~flYtg~i~~~~~~~~v~~Ll~lA~~y~v~~L~~~c~~~L~~~~l~~~n~~~il~~A~~~~~~~L~~~c~~~I~~~f~~v 199 (377)
+|+|||. ++. +++.+||.+|++|+++.|++.|++||.+ .|+++||++++.++..+.+..|.+.|.+||.+||.+|
T Consensus 84 ~y~Yt~~--i~~--~nv~~ll~aA~~lqi~~l~~~C~~~l~~-~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v 158 (557)
T PHA02713 84 QYLYNRH--ISS--MNVIDVLKCADYLLIDDLVTDCESYIKD-YTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTL 158 (557)
T ss_pred HHhcCCC--CCH--HHHHHHHHHHHHHCHHHHHHHHHHHHHh-hCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 9999997 455 8999999999999999999999999999 8999999999998888888889999999999999999
Q ss_pred hCchhHhhcccc------------CCCcHHHHHHHHHcc-ccchHHHH
Q 037646 200 SDSEGWKAMMQS------------HPVLEKELVESVLDE-DHKQKERI 234 (377)
Q Consensus 200 ~~~~~F~~L~~~------------~~~l~~evl~~~~~~-~~~~~~r~ 234 (377)
.++++|..|+.+ ++..|.++|+++++| .++..+|.
T Consensus 159 ~~~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d~~~r~ 206 (557)
T PHA02713 159 ITTDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYNYITEE 206 (557)
T ss_pred hCChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcCHHHHH
Confidence 999999998743 245689999999999 77755554
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.97 E-value=1.7e-30 Score=267.38 Aligned_cols=204 Identities=22% Similarity=0.291 Sum_probs=190.9
Q ss_pred CCCCCcccHHHHHHHHHHHHhcCCCccEEEEecCCeEEehhHHHHhccCHHHHHhhcCCCCCCCcceEEecCCCHHHHHH
Q 037646 38 PLRGYSCVSTAAKDLWERLFDSGYKADVTIYTDYNGIIYAHANVLGMASPVMKGMLNQSKGHGRWRSLSIHGVPQDAVRV 117 (377)
Q Consensus 38 ~~~~~~~~~~~l~~~l~~l~~~~~~sDV~~~v~~g~~~~aHr~ILaa~S~~F~~mf~~~~~e~~~~~I~i~~v~~~af~~ 117 (377)
.......|...+.+.|+.+++.+.+|||++.+ ++++|+|||.|||+.|+||++||.+++.|+.+.+|.|.++++++++.
T Consensus 12 ~~~~~~~h~~~~l~~l~~lr~~~~lcDv~L~v-~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ 90 (571)
T KOG4441|consen 12 SEFTDPSHSKFLLQGLNELREEGLLCDVTLLV-GDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLEL 90 (571)
T ss_pred cccccHHHHHHHHHHHHHHHHhCCCceEEEEE-CCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHH
Confidence 34556679999999999999999999999999 77999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCccCCChhhHHHHHHHHHhccCchhHHHHHHHHHhhcCCChHHHHHHHHHHhcCCChHHHHHHHHHHHHhHH
Q 037646 118 FIRFLYSSCSEKADMEDYVLHLLVLSHVFVVPQLKRECERQLEHGLLSTENVVDIFQLALLCDAPRLSLVCHRMILKNFK 197 (377)
Q Consensus 118 lL~flYtg~i~~~~~~~~v~~Ll~lA~~y~v~~L~~~c~~~L~~~~l~~~n~~~il~~A~~~~~~~L~~~c~~~I~~~f~ 197 (377)
+|+|+||+.+.++. +|+.+|+.+|+.||++.+.+.|.+||.. .|+++||+.+..+|+.|++.+|.+.+..||.+||.
T Consensus 91 ll~y~Yt~~i~i~~--~nVq~ll~aA~~lQi~~v~~~C~~fL~~-~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~ 167 (571)
T KOG4441|consen 91 LLDYAYTGKLEISE--DNVQELLEAASLLQIPEVVDACCEFLES-QLDPSNCLGIRRFAELHSCTELLEVADEYILQHFA 167 (571)
T ss_pred HHHHhhcceEEech--HhHHHHHHHHHHhhhHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999999 89999999999999999999999999999999999
Q ss_pred HHhCchhHhhcccc-----------CCCcHHHHHHHHHcc-ccchHHHHHHHHHHHHHHh
Q 037646 198 VVSDSEGWKAMMQS-----------HPVLEKELVESVLDE-DHKQKERIRKLKERKIYLQ 245 (377)
Q Consensus 198 ~v~~~~~F~~L~~~-----------~~~l~~evl~~~~~~-~~~~~~r~~~~~e~~~y~q 245 (377)
++.++++|..|+.+ +...|.++|++++.| .++..+|..++.+-....+
T Consensus 168 ~v~~~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d~~~R~~~~~~ll~~vr 227 (571)
T KOG4441|consen 168 EVSKTEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHDFEEREEHLPALLEAVR 227 (571)
T ss_pred HHhccHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcCHhhHHHHHHHHHHhcC
Confidence 99999999998865 577899999999999 8888888888877544433
No 4
>PHA02790 Kelch-like protein; Provisional
Probab=99.96 E-value=1.1e-29 Score=257.90 Aligned_cols=171 Identities=15% Similarity=0.128 Sum_probs=156.7
Q ss_pred HHHHHHHhcCCCccEEEEecCCeEEehhHHHHhccCHHHHHhhcCCCCCCCcceEEe--cCCCHHHHHHHHHHhhCCCcc
Q 037646 51 DLWERLFDSGYKADVTIYTDYNGIIYAHANVLGMASPVMKGMLNQSKGHGRWRSLSI--HGVPQDAVRVFIRFLYSSCSE 128 (377)
Q Consensus 51 ~~l~~l~~~~~~sDV~~~v~~g~~~~aHr~ILaa~S~~F~~mf~~~~~e~~~~~I~i--~~v~~~af~~lL~flYtg~i~ 128 (377)
+.+-.|..++.+|||++.+ |+.|+|||+|||+.|+||++||++++.|+.. +|.+ .++++++|+.+|+|+|||++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~--~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~ 87 (480)
T PHA02790 11 KNILALSMTKKFKTIIEAI--GGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVY 87 (480)
T ss_pred hhHHHHHhhhhhceEEEEc--CcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEE
Confidence 4556788899999999987 5699999999999999999999999999854 4555 499999999999999999999
Q ss_pred CCChhhHHHHHHHHHhccCchhHHHHHHHHHhhcCCChHHHHHHHHHHhcCCChHHHHHHHHHHHHhHHHHhCc--hhHh
Q 037646 129 KADMEDYVLHLLVLSHVFVVPQLKRECERQLEHGLLSTENVVDIFQLALLCDAPRLSLVCHRMILKNFKVVSDS--EGWK 206 (377)
Q Consensus 129 ~~~~~~~v~~Ll~lA~~y~v~~L~~~c~~~L~~~~l~~~n~~~il~~A~~~~~~~L~~~c~~~I~~~f~~v~~~--~~F~ 206 (377)
++. +|+.+|+.+|++|+++.+++.|.+||.+ .|+++||++++.+|+.|++.+|.+.+.+||.+||.+|.++ ++|.
T Consensus 88 it~--~nV~~ll~aA~~Lqi~~v~~~C~~fL~~-~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~ 164 (480)
T PHA02790 88 IDS--HNVVNLLRASILTSVEFIIYTCINFILR-DFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFD 164 (480)
T ss_pred Eec--ccHHHHHHHHHHhChHHHHHHHHHHHHh-hCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhh
Confidence 999 9999999999999999999999999999 8999999999999999999999999999999999999986 8998
Q ss_pred hcccc--------CCCcHHHHHHHHHccc
Q 037646 207 AMMQS--------HPVLEKELVESVLDED 227 (377)
Q Consensus 207 ~L~~~--------~~~l~~evl~~~~~~~ 227 (377)
.|+.. ++..|.+||+++++|-
T Consensus 165 ~L~~~~lLssd~L~v~~Ee~V~eav~~Wl 193 (480)
T PHA02790 165 YLSMKLILESDELNVPDEDYVVDFVIKWY 193 (480)
T ss_pred hCCHHHhcccccCCCccHHHHHHHHHHHH
Confidence 86633 4567999999999993
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.96 E-value=1.1e-28 Score=254.05 Aligned_cols=174 Identities=15% Similarity=0.276 Sum_probs=161.6
Q ss_pred cCCCccEEEEe-cCCeEEehhHHHHhccCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHHHhhCCCccCCChhhHHH
Q 037646 59 SGYKADVTIYT-DYNGIIYAHANVLGMASPVMKGMLNQSKGHGRWRSLSIHGVPQDAVRVFIRFLYSSCSEKADMEDYVL 137 (377)
Q Consensus 59 ~~~~sDV~~~v-~~g~~~~aHr~ILaa~S~~F~~mf~~~~~e~~~~~I~i~~v~~~af~~lL~flYtg~i~~~~~~~~v~ 137 (377)
++.+|||+|.+ .+|+.|+|||.||+++|+||++||.+++. +.+|.|.+ ++++|+.+|+|+|||++.++. +++.
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~--~~~~ 79 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKINITS--NNVK 79 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceEEcH--HHHH
Confidence 89999999997 37899999999999999999999999886 57899999 999999999999999999998 9999
Q ss_pred HHHHHHhccCchhHHHHHHHHHhhcCCChHHHHHHHHHHhcCCChHHHHHHHHHHHHhHHHHhCchhHhhcccc------
Q 037646 138 HLLVLSHVFVVPQLKRECERQLEHGLLSTENVVDIFQLALLCDAPRLSLVCHRMILKNFKVVSDSEGWKAMMQS------ 211 (377)
Q Consensus 138 ~Ll~lA~~y~v~~L~~~c~~~L~~~~l~~~n~~~il~~A~~~~~~~L~~~c~~~I~~~f~~v~~~~~F~~L~~~------ 211 (377)
+|+.+|++|+++.|+..|+++|.. .++.+||+.++.+|..|++..|.+.|.+||.+||.++.++++|..|+.+
T Consensus 80 ~ll~~A~~l~~~~l~~~C~~~l~~-~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~ll 158 (534)
T PHA03098 80 DILSIANYLIIDFLINLCINYIIK-IIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIKIL 158 (534)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHH-hCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHHh
Confidence 999999999999999999999999 8999999999999999999999999999999999999999999999865
Q ss_pred -----CCCcHHHHHHHHHcc-ccchHHHHHHHHH
Q 037646 212 -----HPVLEKELVESVLDE-DHKQKERIRKLKE 239 (377)
Q Consensus 212 -----~~~l~~evl~~~~~~-~~~~~~r~~~~~e 239 (377)
....|.++++++++| .++.++|.+++.+
T Consensus 159 ~~~~L~v~~E~~v~~av~~W~~~~~~~r~~~~~~ 192 (534)
T PHA03098 159 SDDKLNVSSEDVVLEIIIKWLTSKKNNKYKDICL 192 (534)
T ss_pred cCCCcCcCCHHHHHHHHHHHHhcChhhhHhHHHH
Confidence 345688999999999 7777778776655
No 6
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.95 E-value=1.9e-27 Score=224.06 Aligned_cols=180 Identities=22% Similarity=0.313 Sum_probs=168.4
Q ss_pred cHHHHHHHHHHHHhcCCCccEEEEecCCeEEehhHHHHhccCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHHHhhC
Q 037646 45 VSTAAKDLWERLFDSGYKADVTIYTDYNGIIYAHANVLGMASPVMKGMLNQSKGHGRWRSLSIHGVPQDAVRVFIRFLYS 124 (377)
Q Consensus 45 ~~~~l~~~l~~l~~~~~~sDV~~~v~~g~~~~aHr~ILaa~S~~F~~mf~~~~~e~~~~~I~i~~v~~~af~~lL~flYt 124 (377)
....+.++++.++-+.+++||+|+| ++++|+|||.|||+||.||++|+.++|.|+.+..|.+++-+.++|+.+|+||||
T Consensus 27 i~~~fS~~~~~l~~~e~y~DVtfvv-e~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYt 105 (620)
T KOG4350|consen 27 ISNNFSQSFDELFTSEDYSDVTFVV-EDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYT 105 (620)
T ss_pred hccchhHHHHHHhhcCcccceEEEE-eccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhh
Confidence 3455688999999999999999999 779999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCh-hhHHHHHHHHHhccCchhHHHHHHHHHhhcCCChHHHHHHHHHHhcCCChHHHHHHHHHHHHhHHHHhCch
Q 037646 125 SCSEKADM-EDYVLHLLVLSHVFVVPQLKRECERQLEHGLLSTENVVDIFQLALLCDAPRLSLVCHRMILKNFKVVSDSE 203 (377)
Q Consensus 125 g~i~~~~~-~~~v~~Ll~lA~~y~v~~L~~~c~~~L~~~~l~~~n~~~il~~A~~~~~~~L~~~c~~~I~~~f~~v~~~~ 203 (377)
|++.+... .+..++.|.+|++|+++.|.....+||.+ .+..+|++.++..|..|++++|.+.|+.|+-+|-.+++..+
T Consensus 106 g~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~-iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~ 184 (620)
T KOG4350|consen 106 GKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKE-ILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDP 184 (620)
T ss_pred cceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHcccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCc
Confidence 99987653 36789999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred hHhhcccc----------CCCcHHHHHHHHHcc
Q 037646 204 GWKAMMQS----------HPVLEKELVESVLDE 226 (377)
Q Consensus 204 ~F~~L~~~----------~~~l~~evl~~~~~~ 226 (377)
+|..|+++ ....|.+||-++..|
T Consensus 185 sFn~LSk~sL~e~l~RDsFfApE~~IFlAv~~W 217 (620)
T KOG4350|consen 185 SFNRLSKDSLKELLARDSFFAPELKIFLAVRSW 217 (620)
T ss_pred chhhhhHHHHHHHHhhhcccchHHHHHHHHHHH
Confidence 99999976 355688999999999
No 7
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.86 E-value=5.6e-21 Score=184.44 Aligned_cols=191 Identities=25% Similarity=0.328 Sum_probs=164.9
Q ss_pred CCCCcccHHHHHHHHHHHHhcCCCccEEEEecC----CeEEehhHHHHhccCHHHHHhhcCCCCCCCcceEEecCCCHHH
Q 037646 39 LRGYSCVSTAAKDLWERLFDSGYKADVTIYTDY----NGIIYAHANVLGMASPVMKGMLNQSKGHGRWRSLSIHGVPQDA 114 (377)
Q Consensus 39 ~~~~~~~~~~l~~~l~~l~~~~~~sDV~~~v~~----g~~~~aHr~ILaa~S~~F~~mf~~~~~e~~~~~I~i~~v~~~a 114 (377)
+........++.+....++++...+||.|+|++ -+.|||||.||+..|.+|.+||++++.+....+|.++|+.+.+
T Consensus 91 ~~nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaa 170 (521)
T KOG2075|consen 91 IPNWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAA 170 (521)
T ss_pred CcccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhH
Confidence 334455678899999999999999999999973 2799999999999999999999999999878899999999999
Q ss_pred HHHHHHHhhCCCccCCChhhHHHHHHHHHhccCchhHHHHHHHHHhhcCCChHHHHHHHHH-HhcCCChHHHHHHHHHHH
Q 037646 115 VRVFIRFLYSSCSEKADMEDYVLHLLVLSHVFVVPQLKRECERQLEHGLLSTENVVDIFQL-ALLCDAPRLSLVCHRMIL 193 (377)
Q Consensus 115 f~~lL~flYtg~i~~~~~~~~v~~Ll~lA~~y~v~~L~~~c~~~L~~~~l~~~n~~~il~~-A~~~~~~~L~~~c~~~I~ 193 (377)
|..+|+|||++.+.+.. ++++.++.+|++|.++.|.+.|.+||+. ++...|.+..+-. |..++-++|...|++-|.
T Consensus 171 Fl~~L~flYsdev~~~~--dtvi~tl~~AkKY~VpaLer~CVkflr~-~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id 247 (521)
T KOG2075|consen 171 FLAFLRFLYSDEVKLAA--DTVITTLYAAKKYLVPALERQCVKFLRK-NLMADNAFLELFQRAKLFDEPSLISICLEVID 247 (521)
T ss_pred hHHHHHHHhcchhhhhH--HHHHHHHHHHHHhhhHHHHHHHHHHHHH-hcCChHHHHHHHHHHHhhcCHHHHHHHHHHhh
Confidence 99999999999999998 9999999999999999999999999999 7887777665555 999999999999999999
Q ss_pred HhHHHHhCchhHhhcccc-----------C-CCcHHHHHHHHHccccchHH
Q 037646 194 KNFKVVSDSEGWKAMMQS-----------H-PVLEKELVESVLDEDHKQKE 232 (377)
Q Consensus 194 ~~f~~v~~~~~F~~L~~~-----------~-~~l~~evl~~~~~~~~~~~~ 232 (377)
.+|+.....++|...... . -..+.-+++++++|..-...
T Consensus 248 ~~~~~al~~EGf~did~~~dt~~evl~r~~l~~~e~~lfeA~lkw~~~e~~ 298 (521)
T KOG2075|consen 248 KSFEDALTPEGFCDIDSTRDTYEEVLRRDTLEAREFRLFEAALKWAEAECQ 298 (521)
T ss_pred hHHHhhhCccceeehhhHHHHHHHHHhhcccchhHHHHHHHHHhhccCcch
Confidence 999999999999877621 0 11245577777777443333
No 8
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.84 E-value=1.2e-20 Score=163.05 Aligned_cols=166 Identities=20% Similarity=0.282 Sum_probs=146.1
Q ss_pred CCCcccHHHHHHHHHHHHhcCCCccEEEEecCC--eEEehhHHHHhccCHHHHHhhcCCCCCCCcceEEecCCCHHHHHH
Q 037646 40 RGYSCVSTAAKDLWERLFDSGYKADVTIYTDYN--GIIYAHANVLGMASPVMKGMLNQSKGHGRWRSLSIHGVPQDAVRV 117 (377)
Q Consensus 40 ~~~~~~~~~l~~~l~~l~~~~~~sDV~~~v~~g--~~~~aHr~ILaa~S~~F~~mf~~~~~e~~~~~I~i~~v~~~af~~ 117 (377)
....++++.+..-...|++.++|+|++|.++|+ +.|+|||.|||+||.+.+ |.++..| .+.+..+.|+++++|..
T Consensus 44 Ss~dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~de-kse~~~~dDad~Ea~~t 120 (280)
T KOG4591|consen 44 SSPDSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDE-KSEELDLDDADFEAFHT 120 (280)
T ss_pred CCchhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCc-chhhhcccccCHHHHHH
Confidence 344568999999999999999999999999543 789999999999999886 3332222 34567788999999999
Q ss_pred HHHHhhCCCccCCChhhHHHHHHHHHhccCchhHHHHHHHHHhhcCCChHHHHHHHHHHhcCCChHHHHHHHHHHHHhHH
Q 037646 118 FIRFLYSSCSEKADMEDYVLHLLVLSHVFVVPQLKRECERQLEHGLLSTENVVDIFQLALLCDAPRLSLVCHRMILKNFK 197 (377)
Q Consensus 118 lL~flYtg~i~~~~~~~~v~~Ll~lA~~y~v~~L~~~c~~~L~~~~l~~~n~~~il~~A~~~~~~~L~~~c~~~I~~~f~ 197 (377)
.|+||||+.++.....+.+.+|..+|..|+++.|++.|++-+.. .++.+||+.++++|+..++..|...|...|+.++.
T Consensus 121 ~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a-~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~ 199 (280)
T KOG4591|consen 121 AIRWIYTDEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGA-LLHVDNCIKFYEFAEELNARQLMNVAAEIIAGAWD 199 (280)
T ss_pred hheeeeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HhhHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 99999999998877668999999999999999999999999999 89999999999999999999999999999999998
Q ss_pred HHhCchhHhhccc
Q 037646 198 VVSDSEGWKAMMQ 210 (377)
Q Consensus 198 ~v~~~~~F~~L~~ 210 (377)
.+ ..++|.+|+.
T Consensus 200 dL-~~a~FaqMs~ 211 (280)
T KOG4591|consen 200 DL-GKADFAQMSA 211 (280)
T ss_pred cc-ChHHHHhccH
Confidence 87 6778888775
No 9
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.82 E-value=9e-20 Score=148.30 Aligned_cols=107 Identities=29% Similarity=0.495 Sum_probs=96.5
Q ss_pred HHHHHhcCCCccEEEEecCCeEEehhHHHHhccCHHHHHhhcCC-CCCCCcceEEecCCCHHHHHHHHHHhhCCCccCC-
Q 037646 53 WERLFDSGYKADVTIYTDYNGIIYAHANVLGMASPVMKGMLNQS-KGHGRWRSLSIHGVPQDAVRVFIRFLYSSCSEKA- 130 (377)
Q Consensus 53 l~~l~~~~~~sDV~~~v~~g~~~~aHr~ILaa~S~~F~~mf~~~-~~e~~~~~I~i~~v~~~af~~lL~flYtg~i~~~- 130 (377)
|+++++++.++|++|.+++|..|+|||.||+++|+||+.||.+. +.+....+|.++++++++|..+++|+|+|.+.++
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~ 80 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINS 80 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCH
Confidence 57899999999999999548999999999999999999999988 5666666899999999999999999999999887
Q ss_pred ChhhHHHHHHHHHhccCchhHHHHHHHHHhh
Q 037646 131 DMEDYVLHLLVLSHVFVVPQLKRECERQLEH 161 (377)
Q Consensus 131 ~~~~~v~~Ll~lA~~y~v~~L~~~c~~~L~~ 161 (377)
. +++.+++.+|++|+++.|+..|.++|.+
T Consensus 81 ~--~~~~~ll~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 81 D--ENVEELLELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp T--TTHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 7 9999999999999999999999999976
No 10
>smart00551 ZnF_TAZ TAZ zinc finger, present in p300 and CBP.
Probab=99.80 E-value=1.2e-19 Score=137.70 Aligned_cols=76 Identities=45% Similarity=0.919 Sum_probs=70.0
Q ss_pred HHHHhHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCcchhhHhHHHHHHhhhccCCc--CCCCChhHHHHHHHHHHHh
Q 037646 241 KIYLQLYEAMEALVHICRDGCKTIGPHDKDFKEDQAPCNYTACKGLELLVRHFAGCRLR--IPGKCSHCKRMWQLLELHS 318 (377)
Q Consensus 241 ~~y~ql~~~me~L~h~~~~~c~~~~p~~~~~~~~~~~c~~~~c~~l~~l~~H~~~c~~r--~~~~c~~c~~~~~l~~~h~ 318 (377)
.+|.++.++|++|+|++. |..++ ++|.++.|++||.|++|++.|+.| ..|||..||+||+ |+
T Consensus 2 ~~~~~lq~~l~~L~Ha~~--C~~~~----------~~C~~~~C~~~k~L~~H~~~C~~~~C~~~~C~~ck~~~~----H~ 65 (79)
T smart00551 2 TRYKQLQRWLELLVHARR--CKARE----------AKCQYPNCKTMKKLLRHMDSCKVRKCKYGYCASCKQLWQ----HS 65 (79)
T ss_pred cHHHHHHHHHHHHHHHHh--CCCCC----------CCCCCchhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHH----HH
Confidence 468999999999999977 87543 589999999999999999999999 8999999999999 99
Q ss_pred hcCCCCCCCCCCCCH
Q 037646 319 RLCDDSDVCRVPLCR 333 (377)
Q Consensus 319 ~~c~~~~~c~vp~c~ 333 (377)
++|++.+ |+||+|+
T Consensus 66 k~C~~~~-C~Vc~c~ 79 (79)
T smart00551 66 KHCKDSN-CPVCKCV 79 (79)
T ss_pred HhcCCCC-CCCCCCC
Confidence 9999988 9999995
No 11
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.70 E-value=1.1e-16 Score=151.62 Aligned_cols=172 Identities=18% Similarity=0.224 Sum_probs=152.7
Q ss_pred HHHHHHHHhcCCCccEEEEecCCeEEehhHHHHhccCHHHHHhhcCCCCCCCcceEEec----CCCHHHHHHHHHHhhCC
Q 037646 50 KDLWERLFDSGYKADVTIYTDYNGIIYAHANVLGMASPVMKGMLNQSKGHGRWRSLSIH----GVPQDAVRVFIRFLYSS 125 (377)
Q Consensus 50 ~~~l~~l~~~~~~sDV~~~v~~g~~~~aHr~ILaa~S~~F~~mf~~~~~e~~~~~I~i~----~v~~~af~~lL~flYtg 125 (377)
.=-+.+||.+|..+||++.+ =|.+...|+.-| ..|+||++||+|.|.|++.+.|.+. .++.+++..++.-+|.+
T Consensus 57 kyiyq~lf~q~enSDv~l~a-lg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~d 134 (488)
T KOG4682|consen 57 KYIYQNLFLQGENSDVILEA-LGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRD 134 (488)
T ss_pred HHHHHHHHhcCCCcceehhh-ccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhh
Confidence 33567899999999999999 899999999999 6899999999999999998876664 68899999999999999
Q ss_pred CccCCChhhHHHHHHHHHhccCchhHHHHHHHHHhhcCCChHHHHHHHHHHhcCCChHHHHHHHHHHHHhHHHHhCchhH
Q 037646 126 CSEKADMEDYVLHLLVLSHVFVVPQLKRECERQLEHGLLSTENVVDIFQLALLCDAPRLSLVCHRMILKNFKVVSDSEGW 205 (377)
Q Consensus 126 ~i~~~~~~~~v~~Ll~lA~~y~v~~L~~~c~~~L~~~~l~~~n~~~il~~A~~~~~~~L~~~c~~~I~~~f~~v~~~~~F 205 (377)
++.++. +.+..++++|+++++++|.+.|.+.+.+ .|+++|++..++.+..|+...+.+.|++++..|+-.+....-+
T Consensus 135 EveI~l--~dv~gvlAaA~~lqldgl~qrC~evMie-~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l 211 (488)
T KOG4682|consen 135 EVEIKL--SDVVGVLAAACLLQLDGLIQRCGEVMIE-TLSPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLL 211 (488)
T ss_pred heeccH--HHHHHHHHHHHHHHHhhHHHHHHHHHHH-hcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHH
Confidence 999999 9999999999999999999999999999 8999999999999999999999999999999999888777666
Q ss_pred hhcccc-------CCCc-----HHHHHHHHHcc
Q 037646 206 KAMMQS-------HPVL-----EKELVESVLDE 226 (377)
Q Consensus 206 ~~L~~~-------~~~l-----~~evl~~~~~~ 226 (377)
.+++.+ .|.+ |.++|..+..|
T Consensus 212 ~ei~~~Lm~~ll~SpnLfvmq~EfdLyttlk~W 244 (488)
T KOG4682|consen 212 KEISINLMKQLLGSPNLFVMQVEFDLYTTLKKW 244 (488)
T ss_pred HhcCHHHHHHHhCCCCeEEEEeeehHHHHHHHH
Confidence 666543 2322 56677777666
No 12
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.67 E-value=2.6e-16 Score=121.59 Aligned_cols=90 Identities=26% Similarity=0.417 Sum_probs=84.5
Q ss_pred cEEEEecCCeEEehhHHHHhccCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHHHhhCCCccCCChhhHHHHHHHHH
Q 037646 64 DVTIYTDYNGIIYAHANVLGMASPVMKGMLNQSKGHGRWRSLSIHGVPQDAVRVFIRFLYSSCSEKADMEDYVLHLLVLS 143 (377)
Q Consensus 64 DV~~~v~~g~~~~aHr~ILaa~S~~F~~mf~~~~~e~~~~~I~i~~v~~~af~~lL~flYtg~i~~~~~~~~v~~Ll~lA 143 (377)
||++.+ +|+.|++||.+|+++|+||+.||.+++.+.....|.++++++++|+.+|+|+|++.+.++. .++.+++.+|
T Consensus 1 dv~i~v-~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~--~~~~~l~~~a 77 (90)
T smart00225 1 DVTLVV-GGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPE--ENVEELLELA 77 (90)
T ss_pred CeEEEE-CCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCH--HHHHHHHHHH
Confidence 789999 8899999999999999999999999887777789999999999999999999999999988 7999999999
Q ss_pred hccCchhHHHHHH
Q 037646 144 HVFVVPQLKRECE 156 (377)
Q Consensus 144 ~~y~v~~L~~~c~ 156 (377)
++|+++.|...|+
T Consensus 78 ~~~~~~~l~~~c~ 90 (90)
T smart00225 78 DYLQIPGLVELCE 90 (90)
T ss_pred HHHCcHHHHhhhC
Confidence 9999999998884
No 13
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.60 E-value=1.4e-15 Score=154.57 Aligned_cols=148 Identities=16% Similarity=0.266 Sum_probs=125.3
Q ss_pred CCCccEEEEecCCeEEehhHHHHhccCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHHHhhCC-CccC---CChhhH
Q 037646 60 GYKADVTIYTDYNGIIYAHANVLGMASPVMKGMLNQSKGHGRWRSLSIHGVPQDAVRVFIRFLYSS-CSEK---ADMEDY 135 (377)
Q Consensus 60 ~~~sDV~~~v~~g~~~~aHr~ILaa~S~~F~~mf~~~~~e~~~~~I~i~~v~~~af~~lL~flYtg-~i~~---~~~~~~ 135 (377)
+..-|+.|...||+.++||+++|++|++||..||...|.|+..-.+..-.+..+.++.+|+|+|+. +..+ ....+.
T Consensus 708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF 787 (1267)
T KOG0783|consen 708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDF 787 (1267)
T ss_pred ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhh
Confidence 445588888889999999999999999999999999998887755555555699999999999953 3321 112377
Q ss_pred HHHHHHHHhccCchhHHHHHHHHHhhcCCChHHHHHHHHHHhcCCChHHHHHHHHHHHHhHHHHhCchhHhhc
Q 037646 136 VLHLLVLSHVFVVPQLKRECERQLEHGLLSTENVVDIFQLALLCDAPRLSLVCHRMILKNFKVVSDSEGWKAM 208 (377)
Q Consensus 136 v~~Ll~lA~~y~v~~L~~~c~~~L~~~~l~~~n~~~il~~A~~~~~~~L~~~c~~~I~~~f~~v~~~~~F~~L 208 (377)
+.+++.+||.|-+..|+.+|+..|.. .|+..|+..++++|..|++..|+..|++||+.|...++......++
T Consensus 788 ~~~il~iaDqlli~~Lk~Ice~~ll~-kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Learsi~~~ 859 (1267)
T KOG0783|consen 788 MFEILSIADQLLILELKSICEQSLLR-KLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEARSISEW 859 (1267)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh-HhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhccHhhh
Confidence 89999999999999999999999999 8999999999999999999999999999999999887654433333
No 14
>PF02135 zf-TAZ: TAZ zinc finger; InterPro: IPR000197 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. TAZ (Transcription Adaptor putative Zinc finger) domains are zinc-containing domains found in the homologous transcriptional co-activators CREB-binding protein (CBP) and the P300. CBP and P300 are histone acetyltransferases (2.3.1.48 from EC) that catalyse the reversible acetylation of all four histones in nucleosomes, acting to regulate transcription via chromatin remodelling. These large nuclear proteins interact with numerous transcription factors and viral oncoproteins, including p53 tumour suppressor protein, E1A oncoprotein, MyoD, and GATA-1, and are involved in cell growth, differentiation and apoptosis []. Both CBP and P300 have two copies of the TAZ domain, one in the N-terminal region, the other in the C-terminal region. The TAZ1 domain of CBP and P300 forms a complex with CITED2 (CBP/P300-interacting transactivator with ED-rich tail), inhibiting the activity of the hypoxia inducible factor (HIF-1alpha) and thereby attenuating the cellular response to low tissue oxygen concentration []. Adaptation to hypoxia is mediated by transactivation of hypoxia-responsive genes by hypoxia-inducible factor-1 (HIF-1) in complex with the CBP and p300 transcriptional coactivators []. The TAZ domain adopts an all-alpha fold with zinc-binding sites in the loops connecting the helices. The TAZ1 domain in P300 and the TAZ2 (CH3) domain in CBP have each been shown to have four amphipathic helices, organised by three zinc-binding clusters with HCCC-type coordination [, , ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003712 transcription cofactor activity, 0004402 histone acetyltransferase activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1P4Q_B 1L3E_B 2KJE_A 1WO3_A 1WO4_A 1WO5_A 1LIQ_A 3P57_P 2K8F_A 3IO2_A ....
Probab=99.20 E-value=1.2e-11 Score=93.61 Aligned_cols=72 Identities=36% Similarity=0.791 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCcchhhHhHHHHHHhhhccCCcC--CCCChhHHHHHHHHHHHhhcCC
Q 037646 245 QLYEAMEALVHICRDGCKTIGPHDKDFKEDQAPCNYTACKGLELLVRHFAGCRLRI--PGKCSHCKRMWQLLELHSRLCD 322 (377)
Q Consensus 245 ql~~~me~L~h~~~~~c~~~~p~~~~~~~~~~~c~~~~c~~l~~l~~H~~~c~~r~--~~~c~~c~~~~~l~~~h~~~c~ 322 (377)
++.+.+++|.|+.. |.... ...|.++.|.++|.++.|+..|..+. .+||..||++|+ |++.|+
T Consensus 2 ~~~~~L~~L~Ha~~--C~~~~---------~~~C~~~~C~~~K~ll~H~~~C~~~~C~~~~C~~~k~ll~----H~~~C~ 66 (75)
T PF02135_consen 2 QLQRWLELLLHASS--CRDPE---------HPNCSLPHCRKMKKLLKHMRTCRNRDCPVPGCQSCKRLLS----HARSCK 66 (75)
T ss_dssp HHHHHHHHHHHHHH--HHHHH---------CTT-SSTTHHHHHHHHHHHCCSSSCCSSCCTHHHHHHHHH----HHHHHT
T ss_pred HHHHHHHHHHHHhH--CcCCC---------CCCCCCcccHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHH----HHhcCC
Confidence 56778999999954 77321 25899999999999999999999887 689999999999 999999
Q ss_pred CCCCCCCCCC
Q 037646 323 DSDVCRVPLC 332 (377)
Q Consensus 323 ~~~~c~vp~c 332 (377)
+.+ |+||+|
T Consensus 67 ~~~-C~vc~C 75 (75)
T PF02135_consen 67 DSD-CPVCFC 75 (75)
T ss_dssp STT-SSSHHH
T ss_pred CCC-CCCCCC
Confidence 988 999986
No 15
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.66 E-value=3.1e-08 Score=101.96 Aligned_cols=109 Identities=17% Similarity=0.293 Sum_probs=76.0
Q ss_pred HHHHHHHHHhc----CCCccEEEEecCCeEEehhHHHHhccCHHHHHhhcCCCCCC------------CcceEEecCCCH
Q 037646 49 AKDLWERLFDS----GYKADVTIYTDYNGIIYAHANVLGMASPVMKGMLNQSKGHG------------RWRSLSIHGVPQ 112 (377)
Q Consensus 49 l~~~l~~l~~~----~~~sDV~~~v~~g~~~~aHr~ILaa~S~~F~~mf~~~~~e~------------~~~~I~i~~v~~ 112 (377)
+...|..|+.. ..+.||+|.| |+..|+|||.||+++|++|+.+|-.....+ ....|.++++++
T Consensus 541 fe~sf~kLl~e~~~~ds~hDVtf~v-g~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p 619 (1267)
T KOG0783|consen 541 FEGSFPKLLSEENYKDSFHDVTFYV-GTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPP 619 (1267)
T ss_pred chhhhHHHhhccccccccceEEEEe-cCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCH
Confidence 44556666654 3577999999 999999999999999999999995433221 122455789999
Q ss_pred HHHHHHHHHhhCCCccCC--C----------hhhHHHH-------HHHHHhccCchhHHHHHHHH
Q 037646 113 DAVRVFIRFLYSSCSEKA--D----------MEDYVLH-------LLVLSHVFVVPQLKRECERQ 158 (377)
Q Consensus 113 ~af~~lL~flYtg~i~~~--~----------~~~~v~~-------Ll~lA~~y~v~~L~~~c~~~ 158 (377)
..|+.+|+||||+..-.+ + ..+|... +..++.+|++..|......+
T Consensus 620 ~mfe~lL~~iYtdt~~~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~~s~ 684 (1267)
T KOG0783|consen 620 LMFEILLHYIYTDTLLSPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFSVSR 684 (1267)
T ss_pred HHHHHHHHHHhcccccCCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhhhhc
Confidence 999999999999854221 1 0123333 66677777776666554433
No 16
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.60 E-value=1.5e-07 Score=89.45 Aligned_cols=137 Identities=15% Similarity=0.163 Sum_probs=111.2
Q ss_pred CeEEehhHHHHhccCHHHHHhhcCCCCCCC-cc---eEEecCCCHHHHHHHHHHhhCCCccCCChhhHHHHHHHHHhccC
Q 037646 72 NGIIYAHANVLGMASPVMKGMLNQSKGHGR-WR---SLSIHGVPQDAVRVFIRFLYSSCSEKADMEDYVLHLLVLSHVFV 147 (377)
Q Consensus 72 g~~~~aHr~ILaa~S~~F~~mf~~~~~e~~-~~---~I~i~~v~~~af~~lL~flYtg~i~~~~~~~~v~~Ll~lA~~y~ 147 (377)
..++|||..++ .|..||+.||.|++.|++ .. ...++.....+++..++|+|+++-++.. +.+.+++.+|+++.
T Consensus 300 ~~RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~--~~A~dvll~ad~la 376 (516)
T KOG0511|consen 300 EDRYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIF--DVASDVLLFADKLA 376 (516)
T ss_pred cccccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchH--HHHhhHHHHhhHhh
Confidence 35799999999 578899999999999854 33 2345567788999999999999999988 88999999999987
Q ss_pred ch---hHHHHHHHHHhhc--CCChHHHHHHHHHHhcCCChHHHHHHHHHHHHhHHHHhCchhHhhcccc
Q 037646 148 VP---QLKRECERQLEHG--LLSTENVVDIFQLALLCDAPRLSLVCHRMILKNFKVVSDSEGWKAMMQS 211 (377)
Q Consensus 148 v~---~L~~~c~~~L~~~--~l~~~n~~~il~~A~~~~~~~L~~~c~~~I~~~f~~v~~~~~F~~L~~~ 211 (377)
+. .|+.++.-.|.+- .++.-|+.+++.++.......|...+..|+..|...+...|++......
T Consensus 377 l~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~~ 445 (516)
T KOG0511|consen 377 LADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLRT 445 (516)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHHh
Confidence 65 2555554444330 2566789999999999999999999999999999999999999875543
No 17
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.52 E-value=1.5e-07 Score=85.87 Aligned_cols=107 Identities=16% Similarity=0.100 Sum_probs=82.5
Q ss_pred CcccHHHHHHHHHHHHhcCCCccEEEEecCCeEEehhHHHHhccCHHHHHhhcCCCCCCCcc--eEEecCCCHHHHHHHH
Q 037646 42 YSCVSTAAKDLWERLFDSGYKADVTIYTDYNGIIYAHANVLGMASPVMKGMLNQSKGHGRWR--SLSIHGVPQDAVRVFI 119 (377)
Q Consensus 42 ~~~~~~~l~~~l~~l~~~~~~sDV~~~v~~g~~~~aHr~ILaa~S~~F~~mf~~~~~e~~~~--~I~i~~v~~~af~~lL 119 (377)
......++..+|...++.....|+.|+. ....|+|||++|++|+|+|+.+.++........ .|..-+++-++|+.+|
T Consensus 110 aR~ea~sf~kD~ad~ye~k~c~dldiiF-keTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafL 188 (401)
T KOG2838|consen 110 ARKEANSFLKDFADGYERKVCGDLDIIF-KETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFL 188 (401)
T ss_pred cCcchhHHHHHHhhhhheeeeccceeee-eeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHH
Confidence 3456788899999999999999999999 778999999999999999999887653322222 3555689999999999
Q ss_pred HHhhCCCccCCChh-hHHHHHHHHHhccCch
Q 037646 120 RFLYSSCSEKADME-DYVLHLLVLSHVFVVP 149 (377)
Q Consensus 120 ~flYtg~i~~~~~~-~~v~~Ll~lA~~y~v~ 149 (377)
.|+|||..-.+... .|+.-|-.+..-|+.+
T Consensus 189 h~l~tgEfgmEd~~fqn~diL~QL~edFG~~ 219 (401)
T KOG2838|consen 189 HSLITGEFGMEDLGFQNSDILEQLCEDFGCF 219 (401)
T ss_pred HHHHhcccchhhcCCchHHHHHHHHHhhCCc
Confidence 99999988665421 4455555566666654
No 18
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.40 E-value=4.2e-07 Score=83.07 Aligned_cols=127 Identities=17% Similarity=0.250 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhcCC-CccEEEEecCCe--------------EEehhHHHHhccCHHHHHhhcCCCCC---C------C
Q 037646 46 STAAKDLWERLFDSGY-KADVTIYTDYNG--------------IIYAHANVLGMASPVMKGMLNQSKGH---G------R 101 (377)
Q Consensus 46 ~~~l~~~l~~l~~~~~-~sDV~~~v~~g~--------------~~~aHr~ILaa~S~~F~~mf~~~~~e---~------~ 101 (377)
+..+-.++..||+..- .-|+.+.+.||+ ++.||++|.++||++|+.++.....+ . .
T Consensus 219 ~kkLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~ 298 (401)
T KOG2838|consen 219 FKKLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRR 298 (401)
T ss_pred chhhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccC
Confidence 4455566777777554 445555554443 68999999999999999999432221 1 1
Q ss_pred cceEEecC-CCHHH-HHHHHHHhhCCCccCCCh--------------------------hhHHHHHHHHHhccCchhHHH
Q 037646 102 WRSLSIHG-VPQDA-VRVFIRFLYSSCSEKADM--------------------------EDYVLHLLVLSHVFVVPQLKR 153 (377)
Q Consensus 102 ~~~I~i~~-v~~~a-f~~lL~flYtg~i~~~~~--------------------------~~~v~~Ll~lA~~y~v~~L~~ 153 (377)
...|.+.+ +-|.+ -..+|.++||+.++++.. ...+++|+.+|.+|.+..|.+
T Consensus 299 PkRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQ 378 (401)
T KOG2838|consen 299 PKRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQ 378 (401)
T ss_pred CceeechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 23455553 33444 457889999998865421 134567777777777777777
Q ss_pred HHHHHHhhcCCChHHHHHHH
Q 037646 154 ECERQLEHGLLSTENVVDIF 173 (377)
Q Consensus 154 ~c~~~L~~~~l~~~n~~~il 173 (377)
.|++.+.. ....+++..++
T Consensus 379 a~e~Vir~-acaadlsn~cL 397 (401)
T KOG2838|consen 379 ACEDVIRK-ACAADLSNGCL 397 (401)
T ss_pred HHHHHHHh-hhhhhcccccc
Confidence 77777776 56555554443
No 19
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=98.19 E-value=1.3e-06 Score=69.68 Aligned_cols=69 Identities=29% Similarity=0.414 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhHHHHhCchhHhhcccc-----------CCCcHHHHHHHHHcc-ccchHHHHHH
Q 037646 169 VVDIFQLALLCDAPRLSLVCHRMILKNFKVVSDSEGWKAMMQS-----------HPVLEKELVESVLDE-DHKQKERIRK 236 (377)
Q Consensus 169 ~~~il~~A~~~~~~~L~~~c~~~I~~~f~~v~~~~~F~~L~~~-----------~~~l~~evl~~~~~~-~~~~~~r~~~ 236 (377)
|++++.+|..|+..+|.+.|.+||..||.++..+++|.+|+.+ +...|.++++++++| .++...|..+
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~~r~~~ 80 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPENREEH 80 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHHHHTTT
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHHHHHHH
Confidence 6889999999999999999999999999999999999999865 234678899999999 6665556544
Q ss_pred H
Q 037646 237 L 237 (377)
Q Consensus 237 ~ 237 (377)
.
T Consensus 81 ~ 81 (103)
T PF07707_consen 81 L 81 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 20
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=98.05 E-value=2.7e-05 Score=70.83 Aligned_cols=95 Identities=14% Similarity=0.182 Sum_probs=82.3
Q ss_pred EEEEecCCeEEehhHHHHhccCHHHHHhhcCCCC--CCCcceEEecCCCHHHHHHHHHHhhCCCccCCChhhHHHHHHHH
Q 037646 65 VTIYTDYNGIIYAHANVLGMASPVMKGMLNQSKG--HGRWRSLSIHGVPQDAVRVFIRFLYSSCSEKADMEDYVLHLLVL 142 (377)
Q Consensus 65 V~~~v~~g~~~~aHr~ILaa~S~~F~~mf~~~~~--e~~~~~I~i~~v~~~af~~lL~flYtg~i~~~~~~~~v~~Ll~l 142 (377)
|.+.| ||..|...+.-|.-...+|+.|+..... ...++.|-|+ =+|.-|..+|+||-.|.+.++.....+.+|+.=
T Consensus 7 vkLnv-GG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFID-RSpKHF~~ILNfmRdGdv~LPe~~kel~El~~E 84 (230)
T KOG2716|consen 7 VKLNV-GGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFID-RSPKHFDTILNFMRDGDVDLPESEKELKELLRE 84 (230)
T ss_pred EEEec-CCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEec-CChhHHHHHHHhhhcccccCccchHHHHHHHHH
Confidence 45778 8999999999999999999999988763 2334456664 589999999999999999888777899999999
Q ss_pred HhccCchhHHHHHHHHHhh
Q 037646 143 SHVFVVPQLKRECERQLEH 161 (377)
Q Consensus 143 A~~y~v~~L~~~c~~~L~~ 161 (377)
|.+|.++.|.+.|...+..
T Consensus 85 A~fYlL~~Lv~~C~~~i~~ 103 (230)
T KOG2716|consen 85 AEFYLLDGLVELCQSAIAR 103 (230)
T ss_pred HHHhhHHHHHHHHHHHhhh
Confidence 9999999999999998876
No 21
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.90 E-value=7.5e-06 Score=78.24 Aligned_cols=136 Identities=17% Similarity=0.116 Sum_probs=114.1
Q ss_pred CeEEehhHHHHhccCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHHHhhCCCccCCChhhHHH---HHHHHHhccCc
Q 037646 72 NGIIYAHANVLGMASPVMKGMLNQSKGHGRWRSLSIHGVPQDAVRVFIRFLYSSCSEKADMEDYVL---HLLVLSHVFVV 148 (377)
Q Consensus 72 g~~~~aHr~ILaa~S~~F~~mf~~~~~e~~~~~I~i~~v~~~af~~lL~flYtg~i~~~~~~~~v~---~Ll~lA~~y~v 148 (377)
|..+.+|+.+++++|++|+.|+.....+.....+.+.+.+++.++.+..|.|+..-.... +.+. .++..+..|+.
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~--~~~~~~~~~~a~~f~~~~ 186 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSV--ERIFEKHPDLAAAFKYKN 186 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHH--HHhhcCChhhhhcccccc
Confidence 556999999999999999999988776666666788899999999999999996544433 4444 78889999999
Q ss_pred hhHHHHHHHHHhhcCCChHHHHHHHHHHhcCCChHHHHHHHHHHHH--hHHHHhCchhHhhccc
Q 037646 149 PQLKRECERQLEHGLLSTENVVDIFQLALLCDAPRLSLVCHRMILK--NFKVVSDSEGWKAMMQ 210 (377)
Q Consensus 149 ~~L~~~c~~~L~~~~l~~~n~~~il~~A~~~~~~~L~~~c~~~I~~--~f~~v~~~~~F~~L~~ 210 (377)
..|+..|...+.. .+...++...++.+..++...+...+..++.. +++.+....++.....
T Consensus 187 ~~lk~~~~~~l~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~~~~~k~ 249 (297)
T KOG1987|consen 187 RHLKLACMPVLLS-LIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLEKKLNEVKEKK 249 (297)
T ss_pred HHHHHHHHHHHHH-HHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHHHHHHHHHHhh
Confidence 9999999999999 78899999999999999999999999999987 7777776666544443
No 22
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=97.88 E-value=4e-05 Score=60.37 Aligned_cols=62 Identities=31% Similarity=0.326 Sum_probs=53.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhHHHHhCchhHhhcccc-----------CCCcHHHHHHHHHcc-ccch
Q 037646 169 VVDIFQLALLCDAPRLSLVCHRMILKNFKVVSDSEGWKAMMQS-----------HPVLEKELVESVLDE-DHKQ 230 (377)
Q Consensus 169 ~~~il~~A~~~~~~~L~~~c~~~I~~~f~~v~~~~~F~~L~~~-----------~~~l~~evl~~~~~~-~~~~ 230 (377)
|++++.+|..|+...|.+.|.+||..||..+.++++|..|+.+ ....|.++++++++| .++.
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~~ 74 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHDP 74 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCCH
Confidence 4678899999999999999999999999999999999999854 223589999999999 5554
No 23
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.45 E-value=0.0007 Score=52.52 Aligned_cols=80 Identities=14% Similarity=0.270 Sum_probs=64.5
Q ss_pred EEEEecCCeEEehhHHHHhccCHHHHHhhcCCC--CCCCcceEEecCCCHHHHHHHHHHh-----hCCC------ccCCC
Q 037646 65 VTIYTDYNGIIYAHANVLGMASPVMKGMLNQSK--GHGRWRSLSIHGVPQDAVRVFIRFL-----YSSC------SEKAD 131 (377)
Q Consensus 65 V~~~v~~g~~~~aHr~ILaa~S~~F~~mf~~~~--~e~~~~~I~i~~v~~~af~~lL~fl-----Ytg~------i~~~~ 131 (377)
|.++.+||.+|-.-|.+ |.-|+-+++||+++. .+...++|.+.+++...++.+.+|+ |++. ++++.
T Consensus 19 VkLvS~Ddhefiikre~-AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ipp 97 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKREH-AMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPP 97 (112)
T ss_pred eEeecCCCcEEEEeehh-hhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCH
Confidence 66777788888777765 467999999999764 5667789999999999999999998 6654 24555
Q ss_pred hhhHHHHHHHHHhccC
Q 037646 132 MEDYVLHLLVLSHVFV 147 (377)
Q Consensus 132 ~~~~v~~Ll~lA~~y~ 147 (377)
+.+++||.+|+++.
T Consensus 98 --emaleLL~aAn~Le 111 (112)
T KOG3473|consen 98 --EMALELLMAANYLE 111 (112)
T ss_pred --HHHHHHHHHhhhhc
Confidence 89999999999875
No 24
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.37 E-value=0.00016 Score=56.89 Aligned_cols=88 Identities=13% Similarity=0.155 Sum_probs=65.0
Q ss_pred EEEEecCCeEEehhHHHHh-ccCHHHHHhhcCC---CCCCCcceEEecCCCHHHHHHHHHHhhC-CCccCCChhhHHHHH
Q 037646 65 VTIYTDYNGIIYAHANVLG-MASPVMKGMLNQS---KGHGRWRSLSIHGVPQDAVRVFIRFLYS-SCSEKADMEDYVLHL 139 (377)
Q Consensus 65 V~~~v~~g~~~~aHr~ILa-a~S~~F~~mf~~~---~~e~~~~~I~i~~v~~~af~~lL~flYt-g~i~~~~~~~~v~~L 139 (377)
|.|.| ||+.|.+-+..|. ....+|..|+.+. ........+-| |=++..|+.+|+|+.+ +.+..+. ......+
T Consensus 1 V~lNV-GG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~-~~~~~~l 77 (94)
T PF02214_consen 1 VRLNV-GGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPD-EICLEEL 77 (94)
T ss_dssp EEEEE-TTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---T-TS-HHHH
T ss_pred CEEEE-CCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCC-chhHHHH
Confidence 67899 9999999999998 5567899999864 23344556666 5699999999999999 6766542 2678899
Q ss_pred HHHHhccCchhH-HHHH
Q 037646 140 LVLSHVFVVPQL-KREC 155 (377)
Q Consensus 140 l~lA~~y~v~~L-~~~c 155 (377)
+.-|.+|+++.| .+.|
T Consensus 78 ~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 78 LEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHT-HHHHBHHC
T ss_pred HHHHHHcCCCccccCCC
Confidence 999999999988 5544
No 25
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=97.32 E-value=0.00099 Score=53.48 Aligned_cols=61 Identities=10% Similarity=0.141 Sum_probs=49.9
Q ss_pred cEEEEecCCeEEehhHHHHhccCHHHHHhhcCCCCCC-CcceEEecCCCHHHHHHHHHHhhCC
Q 037646 64 DVTIYTDYNGIIYAHANVLGMASPVMKGMLNQSKGHG-RWRSLSIHGVPQDAVRVFIRFLYSS 125 (377)
Q Consensus 64 DV~~~v~~g~~~~aHr~ILaa~S~~F~~mf~~~~~e~-~~~~I~i~~v~~~af~~lL~flYtg 125 (377)
.|+++..||..|.+.+.+. ..|..++.|+.+...+. ....|.+++++..+++.+++|++..
T Consensus 3 ~v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h 64 (104)
T smart00512 3 YIKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHH 64 (104)
T ss_pred eEEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHc
Confidence 4788888999999999987 69999999997543221 2258999999999999999999754
No 26
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.15 E-value=0.0013 Score=62.62 Aligned_cols=115 Identities=14% Similarity=0.198 Sum_probs=84.0
Q ss_pred eEEehhHHHHhccCHHHHHhhcCCCC-CCCcceEEec-CCCHHHHHHHHHHhhCCCccCCChhhHHHHHHHHHhccCchh
Q 037646 73 GIIYAHANVLGMASPVMKGMLNQSKG-HGRWRSLSIH-GVPQDAVRVFIRFLYSSCSEKADMEDYVLHLLVLSHVFVVPQ 150 (377)
Q Consensus 73 ~~~~aHr~ILaa~S~~F~~mf~~~~~-e~~~~~I~i~-~v~~~af~~lL~flYtg~i~~~~~~~~v~~Ll~lA~~y~v~~ 150 (377)
+.|.+.+.+|-..=.||+..+..... ......|+|. .-+-.+|+-+++|+......++. +|+..++.-|+++++++
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~--~NvvsIliSS~FL~M~~ 91 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTP--SNVVSILISSEFLQMES 91 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCc--CcEEEeEehhhhhccHH
Confidence 68999999999999999999965211 1223345554 45778999999999998888888 99999999999999999
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHhcCCChHHHHHHHHHHHHhHH
Q 037646 151 LKRECERQLEHGLLSTENVVDIFQLALLCDAPRLSLVCHRMILKNFK 197 (377)
Q Consensus 151 L~~~c~~~L~~~~l~~~n~~~il~~A~~~~~~~L~~~c~~~I~~~f~ 197 (377)
|.+.|..|+.. ++ .+++. ..++..-|-...+.-|+..|.
T Consensus 92 Lve~cl~y~~~-~~-----~~Iv~--~~~nl~Cl~~~Ll~RLa~~~t 130 (317)
T PF11822_consen 92 LVEECLQYCHD-HM-----SEIVA--SPCNLNCLNDNLLTRLADMFT 130 (317)
T ss_pred HHHHHHHHHHH-hH-----HHHHc--CCCCcccCCHHHHHHHHHhcC
Confidence 99999999977 32 23322 233444444444444544443
No 27
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=97.09 E-value=0.0029 Score=45.80 Aligned_cols=58 Identities=12% Similarity=0.145 Sum_probs=48.0
Q ss_pred cEEEEecCCeEEehhHHHHhccCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHHHhhC
Q 037646 64 DVTIYTDYNGIIYAHANVLGMASPVMKGMLNQSKGHGRWRSLSIHGVPQDAVRVFIRFLYS 124 (377)
Q Consensus 64 DV~~~v~~g~~~~aHr~ILaa~S~~F~~mf~~~~~e~~~~~I~i~~v~~~af~~lL~flYt 124 (377)
.|+++.+||+.|.+.+.++ ..|..++.||.+...+.. .|.+++++...++.+++|++.
T Consensus 2 ~v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 2 YVKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDEDE--PIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCGT--EEEETTS-HHHHHHHHHHHHH
T ss_pred EEEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhccccc--ccccCccCHHHHHHHHHHHHh
Confidence 3678888999999999998 599999999976433222 799999999999999999974
No 28
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.0082 Score=52.00 Aligned_cols=98 Identities=7% Similarity=0.145 Sum_probs=73.7
Q ss_pred EEEEecCCeEEehhHHHHhccCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHHHhhCCCccC---------------
Q 037646 65 VTIYTDYNGIIYAHANVLGMASPVMKGMLNQSKGHGRWRSLSIHGVPQDAVRVFIRFLYSSCSEK--------------- 129 (377)
Q Consensus 65 V~~~v~~g~~~~aHr~ILaa~S~~F~~mf~~~~~e~~~~~I~i~~v~~~af~~lL~flYtg~i~~--------------- 129 (377)
+.+..+||+.|.+-..++ ..|..+.+++...--......|.|++|+...|..+|.|+|.-.-+.
T Consensus 7 ikL~SsDG~~f~ve~~~a-~~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i 85 (162)
T KOG1724|consen 7 IKLESSDGEIFEVEEEVA-RQSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDI 85 (162)
T ss_pred EEEEccCCceeehhHHHH-HHhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCc
Confidence 556677999999998887 6788888888542211111579999999999999999999844211
Q ss_pred CC--------hhhHHHHHHHHHhccCchhHHHHHHHHHhhcCC
Q 037646 130 AD--------MEDYVLHLLVLSHVFVVPQLKRECERQLEHGLL 164 (377)
Q Consensus 130 ~~--------~~~~v~~Ll~lA~~y~v~~L~~~c~~~L~~~~l 164 (377)
+. ...++.+|+.+|+++++++|...|.+.+.. .+
T Consensus 86 ~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~-mi 127 (162)
T KOG1724|consen 86 PEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVAN-MI 127 (162)
T ss_pred cHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHH-HH
Confidence 00 125788999999999999999999988776 45
No 29
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.47 E-value=0.002 Score=61.95 Aligned_cols=87 Identities=18% Similarity=0.099 Sum_probs=62.3
Q ss_pred CccEEEEecCCeEEehhHHHHhccCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHHHhhCCCccCCChhhHHHHHHH
Q 037646 62 KADVTIYTDYNGIIYAHANVLGMASPVMKGMLNQSKGHGRWRSLSIHGVPQDAVRVFIRFLYSSCSEKADMEDYVLHLLV 141 (377)
Q Consensus 62 ~sDV~~~v~~g~~~~aHr~ILaa~S~~F~~mf~~~~~e~~~~~I~i~~v~~~af~~lL~flYtg~i~~~~~~~~v~~Ll~ 141 (377)
..|++|...+|..|.||+..|+++|.+|..-+..-+ ....+|.-..+-+.+|..|++|+|-..-.+-. +....|+.
T Consensus 149 ~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~--~~~heI~~~~v~~~~f~~flk~lyl~~na~~~--~qynalls 224 (516)
T KOG0511|consen 149 CHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY--VQGHEIEAHRVILSAFSPFLKQLYLNTNAEWK--DQYNALLS 224 (516)
T ss_pred ccchHHHhhccccccHHHHHHHhhhcccCchhhhhc--cccCchhhhhhhHhhhhHHHHHHHHhhhhhhh--hHHHHHHh
Confidence 458999888899999999999999998865543322 23345555567789999999999987333333 44466777
Q ss_pred HHhccCchhHH
Q 037646 142 LSHVFVVPQLK 152 (377)
Q Consensus 142 lA~~y~v~~L~ 152 (377)
+..+|+++.|.
T Consensus 225 i~~kF~~e~l~ 235 (516)
T KOG0511|consen 225 IEVKFSKEKLS 235 (516)
T ss_pred hhhhccHHHhH
Confidence 77777766543
No 30
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=95.86 E-value=0.034 Score=54.61 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=66.1
Q ss_pred EEEEecCCeEEehhHHHHhccC--HHHHHhhcCCCCCCCcce--EEecCCCHHHHHHHHHHhhCCCccCCChhhHHHHHH
Q 037646 65 VTIYTDYNGIIYAHANVLGMAS--PVMKGMLNQSKGHGRWRS--LSIHGVPQDAVRVFIRFLYSSCSEKADMEDYVLHLL 140 (377)
Q Consensus 65 V~~~v~~g~~~~aHr~ILaa~S--~~F~~mf~~~~~e~~~~~--I~i~~v~~~af~~lL~flYtg~i~~~~~~~~v~~Ll 140 (377)
|.|.| +|+.|.-.+.-|+... .+|.+++++.+.-..... |-| |=+|+.|..+|+|+-||+++... .....++
T Consensus 13 V~lNV-GGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI-DRDPdlFaviLn~LRTg~L~~~g--~~~~~ll 88 (465)
T KOG2714|consen 13 VKLNV-GGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI-DRDPDLFAVILNLLRTGDLDASG--VFPERLL 88 (465)
T ss_pred EEEec-CceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe-cCCchHHHHHHHHHhcCCCCCcc--Cchhhhh
Confidence 66788 9999998888886654 699999987765433332 444 56899999999999999999976 4444444
Q ss_pred H-HHhccCchhHHH
Q 037646 141 V-LSHVFVVPQLKR 153 (377)
Q Consensus 141 ~-lA~~y~v~~L~~ 153 (377)
. -|.+|++..|.+
T Consensus 89 hdEA~fYGl~~llr 102 (465)
T KOG2714|consen 89 HDEAMFYGLTPLLR 102 (465)
T ss_pred hhhhhhcCcHHHHH
Confidence 4 899999999887
No 31
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.67 E-value=0.28 Score=40.41 Aligned_cols=99 Identities=11% Similarity=0.132 Sum_probs=70.9
Q ss_pred ccEEEEecCCeEEehhHHHHhccCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHHHhhCCCccCCC-----------
Q 037646 63 ADVTIYTDYNGIIYAHANVLGMASPVMKGMLNQSKGHGRWRSLSIHGVPQDAVRVFIRFLYSSCSEKAD----------- 131 (377)
Q Consensus 63 sDV~~~v~~g~~~~aHr~ILaa~S~~F~~mf~~~~~e~~~~~I~i~~v~~~af~~lL~flYtg~i~~~~----------- 131 (377)
+-|.+..++|..|.+.+.+ |-+|-..+.|+.... ...-.|..++|...+|..+++|+-...-..+.
T Consensus 2 s~i~l~s~dge~F~vd~~i-AerSiLikN~l~d~~--~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~ 78 (158)
T COG5201 2 SMIELESIDGEIFRVDENI-AERSILIKNMLCDST--ACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSK 78 (158)
T ss_pred CceEEEecCCcEEEehHHH-HHHHHHHHHHhcccc--ccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccC
Confidence 4567888899999988876 478888899885422 12233677799999999999998653322111
Q ss_pred ------------hhhHHHHHHHHHhccCchhHHHHHHHHHhhcCCC
Q 037646 132 ------------MEDYVLHLLVLSHVFVVPQLKRECERQLEHGLLS 165 (377)
Q Consensus 132 ------------~~~~v~~Ll~lA~~y~v~~L~~~c~~~L~~~~l~ 165 (377)
..+.+.++.-+|+++.++.|.+.|...+.. .+.
T Consensus 79 p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivae-mir 123 (158)
T COG5201 79 PSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAE-MIR 123 (158)
T ss_pred CccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHH-HHc
Confidence 025667788888888888888888887766 443
No 32
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=94.42 E-value=0.12 Score=46.74 Aligned_cols=109 Identities=12% Similarity=0.129 Sum_probs=74.9
Q ss_pred cEEEEecCCeEEehhHHHHhccC--HHHHHhhcCCC---CCCCcceEEecCCCHHHHHHHHHHhhCCCccCCChhhHHHH
Q 037646 64 DVTIYTDYNGIIYAHANVLGMAS--PVMKGMLNQSK---GHGRWRSLSIHGVPQDAVRVFIRFLYSSCSEKADMEDYVLH 138 (377)
Q Consensus 64 DV~~~v~~g~~~~aHr~ILaa~S--~~F~~mf~~~~---~e~~~~~I~i~~v~~~af~~lL~flYtg~i~~~~~~~~v~~ 138 (377)
=|.+.+ +|+.|.--..-|..+- ..+.+||.+.- .+...+.+-| |-++..|+.+|.|+-.|.+.... .-++..
T Consensus 10 ~vrlni-gGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI-DRsp~yFepIlNyLr~Gq~~~~s-~i~~lg 86 (302)
T KOG1665|consen 10 MVRLNI-GGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI-DRSPKYFEPILNYLRDGQIPSLS-DIDCLG 86 (302)
T ss_pred hheeec-CCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE-ccCchhhHHHHHHHhcCceeecC-CccHHH
Confidence 356667 7777776655555543 46788886542 2334445555 56899999999999999986554 267999
Q ss_pred HHHHHhccCchhHHHHHHHHHhh-----cCCChHHHHHHHHH
Q 037646 139 LLVLSHVFVVPQLKRECERQLEH-----GLLSTENVVDIFQL 175 (377)
Q Consensus 139 Ll~lA~~y~v~~L~~~c~~~L~~-----~~l~~~n~~~il~~ 175 (377)
++..|++|++-+|++..++.-.+ ..++...++.+++.
T Consensus 87 vLeeArff~i~sL~~hle~~~~e~pe~~~pltR~diik~iqT 128 (302)
T KOG1665|consen 87 VLEEARFFQILSLKDHLEDSRKEVPEVEAPLTRIDIIKCIQT 128 (302)
T ss_pred HHHHhhHHhhHhHHhHHhhhccCCCcCCCCccHHHHHHHhhh
Confidence 99999999999999888873221 02344455555554
No 33
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=92.12 E-value=0.5 Score=40.77 Aligned_cols=96 Identities=7% Similarity=-0.009 Sum_probs=72.1
Q ss_pred CccEEEEecCCeEEehhHHHHhccCH-HHHHhhcCCCC----CCCcceEEecCCCHHHHHHHHHHhhCCCccCCChhhHH
Q 037646 62 KADVTIYTDYNGIIYAHANVLGMASP-VMKGMLNQSKG----HGRWRSLSIHGVPQDAVRVFIRFLYSSCSEKADMEDYV 136 (377)
Q Consensus 62 ~sDV~~~v~~g~~~~aHr~ILaa~S~-~F~~mf~~~~~----e~~~~~I~i~~v~~~af~~lL~flYtg~i~~~~~~~~v 136 (377)
..=|.+.| ||..|.--|.-|..-+. |+..+....+. ....+. .+-|=+|..|..+|+|+-.|++.++. -.-
T Consensus 20 s~wVRlNV-GGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGA-YlIDRDP~~FgpvLNylRhgklvl~~--l~e 95 (210)
T KOG2715|consen 20 SLWVRLNV-GGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGA-YLIDRDPFYFGPVLNYLRHGKLVLNK--LSE 95 (210)
T ss_pred eEEEEEec-CCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCc-eEeccCcchHHHHHHHHhcchhhhhh--hhh
Confidence 34577788 89999999999988884 44555544321 111222 33356899999999999999998887 555
Q ss_pred HHHHHHHhccCchhHHHHHHHHHhh
Q 037646 137 LHLLVLSHVFVVPQLKRECERQLEH 161 (377)
Q Consensus 137 ~~Ll~lA~~y~v~~L~~~c~~~L~~ 161 (377)
..+|.-|++|.+++|.++..+.|..
T Consensus 96 eGvL~EAefyn~~~li~likd~i~d 120 (210)
T KOG2715|consen 96 EGVLEEAEFYNDPSLIQLIKDRIQD 120 (210)
T ss_pred hccchhhhccCChHHHHHHHHHHHH
Confidence 6788999999999999998888876
No 34
>PF02135 zf-TAZ: TAZ zinc finger; InterPro: IPR000197 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. TAZ (Transcription Adaptor putative Zinc finger) domains are zinc-containing domains found in the homologous transcriptional co-activators CREB-binding protein (CBP) and the P300. CBP and P300 are histone acetyltransferases (2.3.1.48 from EC) that catalyse the reversible acetylation of all four histones in nucleosomes, acting to regulate transcription via chromatin remodelling. These large nuclear proteins interact with numerous transcription factors and viral oncoproteins, including p53 tumour suppressor protein, E1A oncoprotein, MyoD, and GATA-1, and are involved in cell growth, differentiation and apoptosis []. Both CBP and P300 have two copies of the TAZ domain, one in the N-terminal region, the other in the C-terminal region. The TAZ1 domain of CBP and P300 forms a complex with CITED2 (CBP/P300-interacting transactivator with ED-rich tail), inhibiting the activity of the hypoxia inducible factor (HIF-1alpha) and thereby attenuating the cellular response to low tissue oxygen concentration []. Adaptation to hypoxia is mediated by transactivation of hypoxia-responsive genes by hypoxia-inducible factor-1 (HIF-1) in complex with the CBP and p300 transcriptional coactivators []. The TAZ domain adopts an all-alpha fold with zinc-binding sites in the loops connecting the helices. The TAZ1 domain in P300 and the TAZ2 (CH3) domain in CBP have each been shown to have four amphipathic helices, organised by three zinc-binding clusters with HCCC-type coordination [, , ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003712 transcription cofactor activity, 0004402 histone acetyltransferase activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1P4Q_B 1L3E_B 2KJE_A 1WO3_A 1WO4_A 1WO5_A 1LIQ_A 3P57_P 2K8F_A 3IO2_A ....
Probab=85.98 E-value=1.2 Score=33.31 Aligned_cols=54 Identities=35% Similarity=0.659 Sum_probs=42.1
Q ss_pred hHHHHHHhhhccCCcCCCCCh--hHHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHH
Q 037646 285 GLELLVRHFAGCRLRIPGKCS--HCKRMWQLLELHSRLCDDSDVCRVPLCRNFKERIK 340 (377)
Q Consensus 285 ~l~~l~~H~~~c~~r~~~~c~--~c~~~~~l~~~h~~~c~~~~~c~vp~c~~~k~~~~ 340 (377)
..-.++.|...|.....+.|. .|..|-.| -.|...|...+ |.++.|..-|.-+.
T Consensus 5 ~~L~~L~Ha~~C~~~~~~~C~~~~C~~~K~l-l~H~~~C~~~~-C~~~~C~~~k~ll~ 60 (75)
T PF02135_consen 5 RWLELLLHASSCRDPEHPNCSLPHCRKMKKL-LKHMRTCRNRD-CPVPGCQSCKRLLS 60 (75)
T ss_dssp HHHHHHHHHHHHHHHHCTT-SSTTHHHHHHH-HHHHCCSSSCC-SSCCTHHHHHHHHH
T ss_pred HHHHHHHHHhHCcCCCCCCCCCcccHHHHHH-HHHHHHcCCCC-CCCCCCHHHHHHHH
Confidence 345678999999875556784 79998765 57999999988 99999998887655
No 35
>smart00551 ZnF_TAZ TAZ zinc finger, present in p300 and CBP.
Probab=83.66 E-value=4 Score=30.98 Aligned_cols=52 Identities=31% Similarity=0.597 Sum_probs=38.9
Q ss_pred HHHHHHhhhccCCcCCCCC--hhHHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHH
Q 037646 286 LELLVRHFAGCRLRIPGKC--SHCKRMWQLLELHSRLCDDSDVCRVPLCRNFKERIK 340 (377)
Q Consensus 286 l~~l~~H~~~c~~r~~~~c--~~c~~~~~l~~~h~~~c~~~~~c~vp~c~~~k~~~~ 340 (377)
--.++.|...|+.+- |.| +.|..|-.|++ |-..|...+ |..+-|..=|.-++
T Consensus 10 ~l~~L~Ha~~C~~~~-~~C~~~~C~~~k~L~~-H~~~C~~~~-C~~~~C~~ck~~~~ 63 (79)
T smart00551 10 WLELLVHARRCKARE-AKCQYPNCKTMKKLLR-HMDSCKVRK-CKYGYCASCKQLWQ 63 (79)
T ss_pred HHHHHHHHHhCCCCC-CCCCCchhHHHHHHHH-HHHHcCCCC-CCCCCCHHHHHHHH
Confidence 345678988896653 567 78888877655 788999875 99999987776554
No 36
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=83.08 E-value=1.4 Score=33.22 Aligned_cols=44 Identities=16% Similarity=0.289 Sum_probs=30.9
Q ss_pred hHHHHHHHHHhccCchhHHHHHHHHHhhcCCC---hHHHHHHHHHHhc
Q 037646 134 DYVLHLLVLSHVFVVPQLKRECERQLEHGLLS---TENVVDIFQLALL 178 (377)
Q Consensus 134 ~~v~~Ll~lA~~y~v~~L~~~c~~~L~~~~l~---~~n~~~il~~A~~ 178 (377)
+.+.+|+.+|++++|+.|.+.|.+++.. .+. ++.+..++.+...
T Consensus 14 ~~L~~l~~AA~yL~I~~L~~~~~~~iA~-~i~gks~eeir~~fgi~~d 60 (78)
T PF01466_consen 14 DELFDLLNAANYLDIKGLLDLCCKYIAN-MIKGKSPEEIRKYFGIEND 60 (78)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHH-HHTTS-HHHHHHHHT---T
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHH-HhcCCCHHHHHHHcCCCCC
Confidence 7899999999999999999999998876 444 4444444444433
No 37
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=80.33 E-value=8.9 Score=36.49 Aligned_cols=89 Identities=12% Similarity=0.177 Sum_probs=61.1
Q ss_pred CCCccEEEEecCCeEEehhHHHHhccC-HHHHHhhcCCCCC---CCcceEEe-cCCCHHHHHHHHHHhhCCCccCCChhh
Q 037646 60 GYKADVTIYTDYNGIIYAHANVLGMAS-PVMKGMLNQSKGH---GRWRSLSI-HGVPQDAVRVFIRFLYSSCSEKADMED 134 (377)
Q Consensus 60 ~~~sDV~~~v~~g~~~~aHr~ILaa~S-~~F~~mf~~~~~e---~~~~~I~i-~~v~~~af~~lL~flYtg~i~~~~~~~ 134 (377)
|..--++..+ ++..|.+-+.+|.+.- ..+-.||.+++.- ...++.++ ++++..+|+++|+|--+|.+.-+. .-
T Consensus 93 g~~~~~t~lv-d~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~-~v 170 (438)
T KOG3840|consen 93 GEGDKVCLLV-DQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPS-SV 170 (438)
T ss_pred CCCcceEEEe-eeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCC-CC
Confidence 3444577777 8889999998886542 3446677654321 12234444 489999999999999999886554 25
Q ss_pred HHHHHHHHHhccCchh
Q 037646 135 YVLHLLVLSHVFVVPQ 150 (377)
Q Consensus 135 ~v~~Ll~lA~~y~v~~ 150 (377)
.+.+|-.+.|++.|+.
T Consensus 171 SvpELrEACDYLlipF 186 (438)
T KOG3840|consen 171 SVSELREACDYLLVPF 186 (438)
T ss_pred chHHHHhhcceEEeec
Confidence 6788888888877653
No 38
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=72.91 E-value=8.3 Score=35.17 Aligned_cols=96 Identities=11% Similarity=0.004 Sum_probs=60.5
Q ss_pred CccEEEEecCCeEEehhHHHH-hccCHHHHHhhcCCCC--CCCcceEEecCCCHHHHHHHHHHhhCCCccCCChhhHHHH
Q 037646 62 KADVTIYTDYNGIIYAHANVL-GMASPVMKGMLNQSKG--HGRWRSLSIHGVPQDAVRVFIRFLYSSCSEKADMEDYVLH 138 (377)
Q Consensus 62 ~sDV~~~v~~g~~~~aHr~IL-aa~S~~F~~mf~~~~~--e~~~~~I~i~~v~~~af~~lL~flYtg~i~~~~~~~~v~~ 138 (377)
+.|++..-.||..|..-..-| .-.-..+.+||++... ........| |=+...|+.+|+|+-+....+++...++..
T Consensus 7 ~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l~lpe~f~e~~~ 85 (221)
T KOG2723|consen 7 YPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI-DRDGFLFRYVLDYLRTKALLLPEDFAEVER 85 (221)
T ss_pred cCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE-cCCcchHHHHHHHhcccccccchhhhhHHH
Confidence 445444332665444332323 2234556777775321 122333444 346788999999999977777765578999
Q ss_pred HHHHHhccCchhHHHHHHHH
Q 037646 139 LLVLSHVFVVPQLKRECERQ 158 (377)
Q Consensus 139 Ll~lA~~y~v~~L~~~c~~~ 158 (377)
|+..|++|+++.+.....+-
T Consensus 86 L~rEA~f~~l~~~~~~l~~~ 105 (221)
T KOG2723|consen 86 LVREAEFFQLEAPVTYLLNS 105 (221)
T ss_pred HHHHHHHHccccHHHHHhcc
Confidence 99999999999777655443
No 39
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=61.73 E-value=3.3 Score=39.75 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=38.6
Q ss_pred CCChHHHHHHHHHHhcCCChHHHHHHHHHHHHhHHHHhCch
Q 037646 163 LLSTENVVDIFQLALLCDAPRLSLVCHRMILKNFKVVSDSE 203 (377)
Q Consensus 163 ~l~~~n~~~il~~A~~~~~~~L~~~c~~~I~~~f~~v~~~~ 203 (377)
.++++|++.++--+.....+.|.+.|+.|+..|+.+|+.++
T Consensus 71 ~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~ 111 (317)
T PF11822_consen 71 SLTPSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVASP 111 (317)
T ss_pred cCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCC
Confidence 58999999999999999999999999999999999998865
No 40
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=60.90 E-value=32 Score=26.45 Aligned_cols=60 Identities=17% Similarity=0.255 Sum_probs=41.6
Q ss_pred HHHHHHHhccCchhHHHHHHHHHhhcC------------CChHHHHHHHHHHhc--CCChHHHHHHHHHHHHhHH
Q 037646 137 LHLLVLSHVFVVPQLKRECERQLEHGL------------LSTENVVDIFQLALL--CDAPRLSLVCHRMILKNFK 197 (377)
Q Consensus 137 ~~Ll~lA~~y~v~~L~~~c~~~L~~~~------------l~~~n~~~il~~A~~--~~~~~L~~~c~~~I~~~f~ 197 (377)
.+++.+|..|+.+.|...|.+|+.. + ++.+....++.--.. .+-..+.+.+.+|+..+..
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~-nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~ 75 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAK-NFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPE 75 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH-THHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHH-HHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHH
Confidence 5788999999999999999999876 3 234444455543222 2445788899999887654
No 41
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=58.58 E-value=12 Score=29.16 Aligned_cols=30 Identities=27% Similarity=0.519 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 037646 166 TENVVDIFQLALLCDAPRLSLVCHRMILKN 195 (377)
Q Consensus 166 ~~n~~~il~~A~~~~~~~L~~~c~~~I~~~ 195 (377)
.+++.+++.+|..++.+.|...|..++.++
T Consensus 81 ~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 789999999999999999999999999876
No 42
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=55.28 E-value=18 Score=36.59 Aligned_cols=45 Identities=20% Similarity=0.337 Sum_probs=36.4
Q ss_pred CCChHHHHHHHHHHhcCCChHHHHHHHHHHHHhHHHHhCchhHhhccc
Q 037646 163 LLSTENVVDIFQLALLCDAPRLSLVCHRMILKNFKVVSDSEGWKAMMQ 210 (377)
Q Consensus 163 ~l~~~n~~~il~~A~~~~~~~L~~~c~~~I~~~f~~v~~~~~F~~L~~ 210 (377)
.+..+|++.++..|.+|..+.|...|.+||..+. ....+|..|.+
T Consensus 184 ~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l---~~~naf~~L~q 228 (521)
T KOG2075|consen 184 KLAADTVITTLYAAKKYLVPALERQCVKFLRKNL---MADNAFLELFQ 228 (521)
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc---CChHHHHHHHH
Confidence 3679999999999999999999999999998763 23345555554
No 43
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=47.69 E-value=27 Score=34.88 Aligned_cols=6 Identities=50% Similarity=1.171 Sum_probs=2.4
Q ss_pred CCCCCC
Q 037646 15 PAAPPL 20 (377)
Q Consensus 15 p~ppp~ 20 (377)
|+|||+
T Consensus 236 PPPPPP 241 (480)
T KOG2675|consen 236 PPPPPP 241 (480)
T ss_pred CCCCCC
Confidence 444333
No 44
>PHA02713 hypothetical protein; Provisional
Probab=46.08 E-value=28 Score=36.41 Aligned_cols=45 Identities=20% Similarity=0.173 Sum_probs=37.4
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHhcCCChHHHHHHHHHHHHhH
Q 037646 152 KRECERQLEHGLLSTENVVDIFQLALLCDAPRLSLVCHRMILKNF 196 (377)
Q Consensus 152 ~~~c~~~L~~~~l~~~n~~~il~~A~~~~~~~L~~~c~~~I~~~f 196 (377)
.+...+|+-.+.|+.+|+.+++..|..+..+.|.+.|.+|+.+++
T Consensus 79 ~~~ll~y~Yt~~i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l 123 (557)
T PHA02713 79 VKNIVQYLYNRHISSMNVIDVLKCADYLLIDDLVTDCESYIKDYT 123 (557)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhC
Confidence 344556665546899999999999999999999999999998654
No 45
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=37.18 E-value=1.3e+02 Score=23.82 Aligned_cols=56 Identities=16% Similarity=0.270 Sum_probs=40.3
Q ss_pred cEEEEecC-CeEEehhHHHHhccCHHHHHhhcCCC---CCCCcceEEecCCCHHHHHHHHHHh
Q 037646 64 DVTIYTDY-NGIIYAHANVLGMASPVMKGMLNQSK---GHGRWRSLSIHGVPQDAVRVFIRFL 122 (377)
Q Consensus 64 DV~~~v~~-g~~~~aHr~ILaa~S~~F~~mf~~~~---~e~~~~~I~i~~v~~~af~~lL~fl 122 (377)
-+.+.||+ .+.|-++...| ..|.|+.++...- .-...+.|.|+ -+...|+.+|..|
T Consensus 40 ~~~VyVG~~~~Rfvvp~~~L--~hp~f~~LL~~aeeEfG~~~~G~l~iP-C~~~~Fe~~l~~l 99 (100)
T PF02519_consen 40 HFAVYVGEERRRFVVPVSYL--NHPLFQELLEQAEEEFGFDQDGPLTIP-CDVVLFEHLLWLL 99 (100)
T ss_pred eEEEEeCccceEEEechHHc--CchhHHHHHHHHhhhcCcCCCCcEEee-CCHHHHHHHHHHh
Confidence 46788865 57888998888 5899999995432 22335567776 5778888888765
No 46
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=36.39 E-value=23 Score=26.83 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=14.1
Q ss_pred CCChhHHHHHHHHHHHh
Q 037646 302 GKCSHCKRMWQLLELHS 318 (377)
Q Consensus 302 ~~c~~c~~~~~l~~~h~ 318 (377)
-+|+.|++.+++|.-+.
T Consensus 8 ~~Cp~C~~ak~~L~~~~ 24 (86)
T TIGR02183 8 PGCPYCVRAKQLAEKLA 24 (86)
T ss_pred CCCccHHHHHHHHHHhC
Confidence 48999999999987653
No 47
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=34.29 E-value=85 Score=23.60 Aligned_cols=25 Identities=12% Similarity=0.204 Sum_probs=21.3
Q ss_pred HHHHHHHhccCchhHHHHHHHHHhh
Q 037646 137 LHLLVLSHVFVVPQLKRECERQLEH 161 (377)
Q Consensus 137 ~~Ll~lA~~y~v~~L~~~c~~~L~~ 161 (377)
.+++.+|+.|+.+.|...|.+++..
T Consensus 2 ~~i~~~a~~~~~~~L~~~~~~~i~~ 26 (101)
T smart00875 2 LGIRRFAELYGLEELLEKALRFILK 26 (101)
T ss_pred HhHHHHHHHhChHHHHHHHHHHHHH
Confidence 3577889999999999999999765
No 48
>PHA03098 kelch-like protein; Provisional
Probab=33.10 E-value=40 Score=34.76 Aligned_cols=33 Identities=27% Similarity=0.303 Sum_probs=30.4
Q ss_pred CCChHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 037646 163 LLSTENVVDIFQLALLCDAPRLSLVCHRMILKN 195 (377)
Q Consensus 163 ~l~~~n~~~il~~A~~~~~~~L~~~c~~~I~~~ 195 (377)
.++.+|+.+++..|..++.+.|.+.|.+|+.++
T Consensus 72 ~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~ 104 (534)
T PHA03098 72 NITSNNVKDILSIANYLIIDFLINLCINYIIKI 104 (534)
T ss_pred EEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 368899999999999999999999999999864
No 49
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=27.20 E-value=47 Score=22.89 Aligned_cols=15 Identities=27% Similarity=0.618 Sum_probs=12.5
Q ss_pred CCChhHHHHHHHHHH
Q 037646 302 GKCSHCKRMWQLLEL 316 (377)
Q Consensus 302 ~~c~~c~~~~~l~~~ 316 (377)
-||+.|++...+|.-
T Consensus 7 ~~C~~C~~~~~~L~~ 21 (60)
T PF00462_consen 7 PGCPYCKKAKEFLDE 21 (60)
T ss_dssp TTSHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHH
Confidence 489999999999843
No 50
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=26.60 E-value=45 Score=24.96 Aligned_cols=15 Identities=33% Similarity=0.519 Sum_probs=12.9
Q ss_pred CCChhHHHHHHHHHH
Q 037646 302 GKCSHCKRMWQLLEL 316 (377)
Q Consensus 302 ~~c~~c~~~~~l~~~ 316 (377)
.+|+.|++.+.+|.=
T Consensus 9 ~~C~~C~~a~~~L~~ 23 (85)
T PRK11200 9 PGCPYCVRAKELAEK 23 (85)
T ss_pred CCChhHHHHHHHHHh
Confidence 479999999999874
No 51
>PF02637 GatB_Yqey: GatB domain; InterPro: IPR018027 The GatB domain, the function of which is uncertain, is associated with aspartyl/glutamyl amidotransferase subunit B and glutamyl amidotransferase subunit E. These are involved in the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln). ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 2D6F_D 3H0M_H 3H0R_K 3H0L_K 3KFU_F 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B ....
Probab=25.75 E-value=2.1e+02 Score=24.00 Aligned_cols=71 Identities=23% Similarity=0.251 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHhhCCCccCCChhhHHHHHHHHHhccCchhHHHHHHHHHhhcCCChHHHHHHHHHHhcCCChHHHHHHH
Q 037646 110 VPQDAVRVFIRFLYSSCSEKADMEDYVLHLLVLSHVFVVPQLKRECERQLEHGLLSTENVVDIFQLALLCDAPRLSLVCH 189 (377)
Q Consensus 110 v~~~af~~lL~flYtg~i~~~~~~~~v~~Ll~lA~~y~v~~L~~~c~~~L~~~~l~~~n~~~il~~A~~~~~~~L~~~c~ 189 (377)
++++.|..+++.+..|.+.... +.+++ ...+.. .-+++.++.-..+....+...|...|.
T Consensus 40 i~~~~l~~li~l~~~~~Is~~~----ak~ll---------------~~~~~~-~~~~~~ii~~~~l~~i~d~~el~~~v~ 99 (148)
T PF02637_consen 40 ISPEHLAELINLLEDGKISKKS----AKELL---------------RELLEN-GKSPEEIIEENGLWQISDEEELEALVE 99 (148)
T ss_dssp STHHHHHHHHHHHHTTSSGHHH----HHHHH---------------HHHHHH-TS-HHHHHHHTT---B--CCHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHH----HHHHH---------------HHHHHc-CCCHHHHHHHcCCCcCCCHHHHHHHHH
Confidence 7788888888888888765433 22222 222233 345556665555555666678888999
Q ss_pred HHHHHhHHHHh
Q 037646 190 RMILKNFKVVS 200 (377)
Q Consensus 190 ~~I~~~f~~v~ 200 (377)
..|..|-..+.
T Consensus 100 ~vi~~n~~~v~ 110 (148)
T PF02637_consen 100 EVIAENPKEVE 110 (148)
T ss_dssp HHHHC-HHHHH
T ss_pred HHHHHCHHHHH
Confidence 98888866653
No 52
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=25.60 E-value=49 Score=32.92 Aligned_cols=28 Identities=11% Similarity=0.142 Sum_probs=26.8
Q ss_pred hHHHHHHHHHhccCchhHHHHHHHHHhh
Q 037646 134 DYVLHLLVLSHVFVVPQLKRECERQLEH 161 (377)
Q Consensus 134 ~~v~~Ll~lA~~y~v~~L~~~c~~~L~~ 161 (377)
+++...|.+|.+|++++++..|.++|..
T Consensus 173 kta~~yYea~ckYgle~vk~kc~ewl~~ 200 (488)
T KOG4682|consen 173 KTACGYYEAACKYGLESVKKKCLEWLLN 200 (488)
T ss_pred hhhhHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 8899999999999999999999999977
No 53
>PRK00391 rpsR 30S ribosomal protein S18; Reviewed
Probab=25.18 E-value=74 Score=24.10 Aligned_cols=23 Identities=9% Similarity=0.158 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCC
Q 037646 347 EIKWKKLVEKMLRTKRIGGANFF 369 (377)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~ 369 (377)
...++.|.+-|.+||.|++-|+-
T Consensus 55 ~k~Qr~l~~aIkrAR~~~LlPf~ 77 (79)
T PRK00391 55 AKHQRQLATAIKRARFLALLPYV 77 (79)
T ss_pred HHHHHHHHHHHHHHHHhhCCCcc
Confidence 34458888999999999999974
No 54
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=25.03 E-value=51 Score=23.66 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=13.3
Q ss_pred CCChhHHHHHHHHHH
Q 037646 302 GKCSHCKRMWQLLEL 316 (377)
Q Consensus 302 ~~c~~c~~~~~l~~~ 316 (377)
-+|+.|.+..++|.-
T Consensus 9 ~~Cp~C~~ak~~L~~ 23 (72)
T cd03029 9 PGCPFCARAKAALQE 23 (72)
T ss_pred CCCHHHHHHHHHHHH
Confidence 489999999999974
No 55
>TIGR00165 S18 ribosomal protein S18. This ribosomal small subunit protein is found in all eubacteria so far, as well as in chloroplasts. YER050C from Saccharomyces cerevisiae and a related protein from Caenorhabditis elegans appear to be homologous and may represent mitochondrial forms. The trusted cutoff is set high enough that these two candidate S18 proteins are not categorized automatically.
Probab=23.88 E-value=84 Score=23.22 Aligned_cols=22 Identities=9% Similarity=0.172 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhhhcCCCCC
Q 037646 348 IKWKKLVEKMLRTKRIGGANFF 369 (377)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~ 369 (377)
.+++.|-+-|.+||.|++-|+.
T Consensus 47 k~Qr~l~~aIKrAR~~~LlP~~ 68 (70)
T TIGR00165 47 KYQRRLARAIKRARYLALLPYV 68 (70)
T ss_pred HHHHHHHHHHHHHHHHhcCCcc
Confidence 4457888899999999999974
No 56
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=23.82 E-value=54 Score=23.87 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=15.4
Q ss_pred CCChhHHHHHHHHHHHhh
Q 037646 302 GKCSHCKRMWQLLELHSR 319 (377)
Q Consensus 302 ~~c~~c~~~~~l~~~h~~ 319 (377)
.+|+.|+++.++|.-+.-
T Consensus 8 ~~Cp~C~~~~~~l~~~~~ 25 (82)
T cd03419 8 SYCPYCKRAKSLLKELGV 25 (82)
T ss_pred CCCHHHHHHHHHHHHcCC
Confidence 489999999999887764
No 57
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=23.55 E-value=55 Score=23.59 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=13.5
Q ss_pred CCChhHHHHHHHHHHH
Q 037646 302 GKCSHCKRMWQLLELH 317 (377)
Q Consensus 302 ~~c~~c~~~~~l~~~h 317 (377)
.+|+.|++..++|.-|
T Consensus 9 ~~C~~C~ka~~~L~~~ 24 (73)
T cd03027 9 LGCEDCTAVRLFLREK 24 (73)
T ss_pred CCChhHHHHHHHHHHC
Confidence 4799999999998854
No 58
>KOG4327 consensus mRNA splicing protein SMN (survival motor neuron) [RNA processing and modification]
Probab=23.13 E-value=1e+02 Score=27.60 Aligned_cols=10 Identities=50% Similarity=1.301 Sum_probs=6.1
Q ss_pred CCCCCCCCCC
Q 037646 14 APAAPPLPGP 23 (377)
Q Consensus 14 ~p~ppp~p~~ 23 (377)
+|+|||.|.|
T Consensus 169 mpppPP~pp~ 178 (218)
T KOG4327|consen 169 MPPPPPMPPP 178 (218)
T ss_pred CCCCCCCCcc
Confidence 4666666653
No 59
>TIGR02425 decarb_PcaC 4-carboxymuconolactone decarboxylase. Members of this family are 4-carboxymuconolactone decarboxylase, which catalyzes the third step in the catabolism of protocatechuate (and therefore the fourth step in the catabolism of para-hydroxybenzoate, of 3-hydroxybenzoate, of vanillate, etc.). Most members of this family are encoded within protocatechuate catabolism operons. This protein is sometimes found as a fusion protein with other enzymes of the pathway, as in Rhodococcus opacus, Streptomyces avermitilis, and Caulobacter crescentus.
Probab=22.80 E-value=4.3e+02 Score=21.61 Aligned_cols=79 Identities=6% Similarity=0.142 Sum_probs=55.2
Q ss_pred EecCCCHHHHHHHHHHhhCCCccCCC---hhhHHHHHHHHHhccCchhHHHHHHHHHhhcCCChHHHHHHHHHHhcC-CC
Q 037646 106 SIHGVPQDAVRVFIRFLYSSCSEKAD---MEDYVLHLLVLSHVFVVPQLKRECERQLEHGLLSTENVVDIFQLALLC-DA 181 (377)
Q Consensus 106 ~i~~v~~~af~~lL~flYtg~i~~~~---~~~~v~~Ll~lA~~y~v~~L~~~c~~~L~~~~l~~~n~~~il~~A~~~-~~ 181 (377)
.+.+++|+..+.+.+|.|.+-+.-+. ....+..|-.++-.=..+.|+......|.. -++++.+.+++..+..| +.
T Consensus 27 ~~~~~~p~~~~~~~~~~fgdv~~r~~Ld~k~R~Litla~laa~g~~~~l~~h~~~Al~~-G~T~~ei~Evl~q~~~y~G~ 105 (123)
T TIGR02425 27 ATTDFDQPFQELITEYAWGTVWTRPGLTKRERSLVTIALLAALGRDEELAMHVRATANT-GVTEDDIKEVLLHVAIYAGV 105 (123)
T ss_pred cccccCHHHHHHHHHHHhhhhhccCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCH
Confidence 45678899999999999887654332 224455555555555567888888888888 49999998877766665 55
Q ss_pred hHHH
Q 037646 182 PRLS 185 (377)
Q Consensus 182 ~~L~ 185 (377)
+...
T Consensus 106 P~a~ 109 (123)
T TIGR02425 106 PAAN 109 (123)
T ss_pred HHHH
Confidence 5443
No 60
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=22.76 E-value=59 Score=24.00 Aligned_cols=14 Identities=21% Similarity=0.534 Sum_probs=12.8
Q ss_pred CCChhHHHHHHHHH
Q 037646 302 GKCSHCKRMWQLLE 315 (377)
Q Consensus 302 ~~c~~c~~~~~l~~ 315 (377)
-||+.|++..++|.
T Consensus 16 ~~Cp~C~~ak~~L~ 29 (79)
T TIGR02190 16 PGCPFCAKAKATLK 29 (79)
T ss_pred CCCHhHHHHHHHHH
Confidence 48999999999996
No 61
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=21.36 E-value=64 Score=25.22 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=13.5
Q ss_pred CCChhHHHHHHHHHHH
Q 037646 302 GKCSHCKRMWQLLELH 317 (377)
Q Consensus 302 ~~c~~c~~~~~l~~~h 317 (377)
-+||.|++..++|.=+
T Consensus 16 ~~Cp~C~~ak~~L~~~ 31 (99)
T TIGR02189 16 SSCCMCHVVKRLLLTL 31 (99)
T ss_pred CCCHHHHHHHHHHHHc
Confidence 4799999999998644
No 62
>PHA02790 Kelch-like protein; Provisional
Probab=21.09 E-value=1.3e+02 Score=30.64 Aligned_cols=32 Identities=6% Similarity=0.181 Sum_probs=28.8
Q ss_pred cCCChhhHHHHHHHHHhccCchhHHHHHHHHHhh
Q 037646 128 EKADMEDYVLHLLVLSHVFVVPQLKRECERQLEH 161 (377)
Q Consensus 128 ~~~~~~~~v~~Ll~lA~~y~v~~L~~~c~~~L~~ 161 (377)
.++. +|.++++.+|+.|+++.|.+.+.+|+.+
T Consensus 119 ~l~~--~NCl~i~~~A~~y~~~~L~~~a~~fi~~ 150 (480)
T PHA02790 119 DFRK--EYCVECYMMGIEYGLSNLLCHTKDFIAK 150 (480)
T ss_pred hCCc--chHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 3555 8999999999999999999999999877
No 63
>PF09593 Pathogen_betaC1: Beta-satellite pathogenicity beta C1 protein; InterPro: IPR018583 Cotton leaf-curl disease - CLCuD - is of major economic importance in cotton-growing areas of the far-east. The infectious agent appears to be a single-stranded DNA molecule of approx 1350 nucleotides in length, which, when inoculated with the Begomovirus into cotton, induces symptoms typical of CLCuD. This molecule requires the Begomovirus for replication and encapsidation []. DNA beta encodes a single protein, betaC1. The intracellular distribution of betaC1 is consistent with the hypothesis that it has a role in transporting the DNA A of Begomovirus from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell. The DNA beta-encoded protein, betaC1, is the determinant of both pathogenicity and suppression of gene silencing [].
Probab=21.06 E-value=98 Score=25.33 Aligned_cols=57 Identities=9% Similarity=0.166 Sum_probs=36.4
Q ss_pred CCeEEehhHHHHhccCHHHHHh-hcCCCCCCCcceEEec-CC--CHHHHHHHHHHhhCCCccCC
Q 037646 71 YNGIIYAHANVLGMASPVMKGM-LNQSKGHGRWRSLSIH-GV--PQDAVRVFIRFLYSSCSEKA 130 (377)
Q Consensus 71 ~g~~~~aHr~ILaa~S~~F~~m-f~~~~~e~~~~~I~i~-~v--~~~af~~lL~flYtg~i~~~ 130 (377)
++..|.+|-.+++++||.+.+- |.=+. +..+ +..+ |+ -.+.+...|.++|.+.-..+
T Consensus 20 ~~~~i~V~i~l~ST~sP~l~k~~f~IpY--~~~~-ii~PFDFNglEe~I~~~l~~mY~~s~~~e 80 (117)
T PF09593_consen 20 EDMSIFVHIQLFSTRSPALIKKKFIIPY--THEG-IIPPFDFNGLEEGIKNTLKIMYKDSKIEE 80 (117)
T ss_pred CCCEEEEEEEEEECCChHHheEEEEEec--cCCC-eECCcccCcHHHHHHHHHHHHhCCCCccc
Confidence 4679999999999999998542 11000 1111 2221 22 36788999999999865433
No 64
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=20.53 E-value=3.2e+02 Score=25.63 Aligned_cols=64 Identities=13% Similarity=0.226 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHhhCCCccCCChhhHHHHHHHHHhccCchh-HHHHHHHHHhhcCCChHHHHHHHHHH
Q 037646 110 VPQDAVRVFIRFLYSSCSEKADMEDYVLHLLVLSHVFVVPQ-LKRECERQLEHGLLSTENVVDIFQLA 176 (377)
Q Consensus 110 v~~~af~~lL~flYtg~i~~~~~~~~v~~Ll~lA~~y~v~~-L~~~c~~~L~~~~l~~~n~~~il~~A 176 (377)
.....++.++.-+...+-.++- ..+..||..|..++... .+...+.-+.. .|...++-+++--+
T Consensus 68 ~~r~llEtiV~lLP~e~~svsc--~FL~~LLr~A~~l~as~~cr~~Le~rIg~-qLd~AtldDLLIP~ 132 (258)
T PF03000_consen 68 EQRELLETIVSLLPPEKGSVSC--SFLFRLLRAAIMLGASSACRNELERRIGS-QLDQATLDDLLIPS 132 (258)
T ss_pred HHHHHHHHHHHhCCCCCCcccH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HhhhccHHHhcccC
Confidence 4567788999999988777777 89999999999998754 44455555655 56666666666655
No 65
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=20.43 E-value=69 Score=23.97 Aligned_cols=14 Identities=43% Similarity=0.819 Sum_probs=12.5
Q ss_pred CCChhHHHHHHHHH
Q 037646 302 GKCSHCKRMWQLLE 315 (377)
Q Consensus 302 ~~c~~c~~~~~l~~ 315 (377)
.|||.|++.-.+|.
T Consensus 9 ~~CPyC~~ak~~L~ 22 (80)
T COG0695 9 PGCPYCKRAKRLLD 22 (80)
T ss_pred CCCchHHHHHHHHH
Confidence 46999999999987
No 66
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=20.31 E-value=70 Score=23.29 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=14.5
Q ss_pred CCChhHHHHHHHHHHHh
Q 037646 302 GKCSHCKRMWQLLELHS 318 (377)
Q Consensus 302 ~~c~~c~~~~~l~~~h~ 318 (377)
-+|+.|+++..+|.=+.
T Consensus 7 ~~Cp~C~~~~~~L~~~~ 23 (84)
T TIGR02180 7 SYCPYCKKAKEILAKLN 23 (84)
T ss_pred CCChhHHHHHHHHHHcC
Confidence 48999999999987765
No 67
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=20.08 E-value=49 Score=25.67 Aligned_cols=19 Identities=32% Similarity=1.039 Sum_probs=14.8
Q ss_pred hhccCCcCCCCChhHHHHH
Q 037646 293 FAGCRLRIPGKCSHCKRMW 311 (377)
Q Consensus 293 ~~~c~~r~~~~c~~c~~~~ 311 (377)
|..-+.+.|.-||.||-.|
T Consensus 68 f~~~~ik~pSRCP~CKSE~ 86 (97)
T COG3357 68 FRDDKIKKPSRCPKCKSEW 86 (97)
T ss_pred ccccccCCcccCCcchhhc
Confidence 3345677788999999888
Done!