Query 037647
Match_columns 575
No_of_seqs 167 out of 870
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 03:03:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037647.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037647hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2262 Sexual differentiation 100.0 3E-166 5E-171 1333.6 34.8 558 6-575 87-761 (761)
2 TIGR00727 ISP4_OPT small oligo 100.0 2E-153 5E-158 1284.2 42.9 522 6-542 40-679 (681)
3 TIGR00728 OPT_sfam oligopeptid 100.0 1.7E-99 4E-104 859.4 40.5 495 7-539 34-654 (654)
4 PF03169 OPT: OPT oligopeptide 100.0 4E-100 9E-105 861.3 35.0 495 7-537 19-624 (624)
5 TIGR00733 putative oligopeptid 100.0 2.1E-32 4.7E-37 305.5 33.3 429 22-536 35-589 (591)
6 COG1297 Predicted membrane pro 99.8 9.8E-19 2.1E-23 189.5 22.1 422 59-542 63-619 (624)
7 COG1271 CydA Cytochrome bd-typ 57.9 1.6E+02 0.0035 33.0 12.9 96 334-439 44-151 (457)
8 PHA02132 hypothetical protein 27.4 67 0.0015 26.6 3.0 41 396-436 26-67 (86)
9 COG0628 yhhT Predicted permeas 24.1 5.7E+02 0.012 27.1 10.3 38 400-437 290-331 (355)
10 PF14715 FixP_N: N-terminal do 22.9 1.4E+02 0.0029 23.2 3.8 27 345-372 17-43 (51)
No 1
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-166 Score=1333.61 Aligned_cols=558 Identities=62% Similarity=1.181 Sum_probs=538.0
Q ss_pred CCCCC-CCCCCCCceehHHHHHHHHHHHHHHHHhhCCCCCcccCCcceeeecCCCCCCcccceeeehhhhcccCCC----
Q 037647 6 EEVND-SPIEQNQLSVGSISAQIIVLPLGKLMAATLPSKPIRVPLTKWTFSMNPGPFNLKEHVLITIFANCGAGEK---- 80 (575)
Q Consensus 6 ~~~~~-~~~r~p~i~is~~~~ql~~yp~G~~~a~~lP~~~~~~~~~~~~~~lNPGpF~~KEh~li~imA~~a~~~a---- 80 (575)
+.||| |++|+|+++||.+++|+++||+||+|||+||+|++++ ++||+|+|||||||.|||++|||+||++++.+
T Consensus 87 a~vNqFF~~R~~~lsis~i~aQi~~~PlGklma~~lP~~~~~~-~~~~~fslNPGPFn~KEHvlitIfan~~sg~aYat~ 165 (761)
T KOG2262|consen 87 AFVNQFFSYRYPPLSISAIVAQIATYPLGKLMAKTLPTWKFGL-GGRWSFSLNPGPFNVKEHVLITIFANIGSGTAYATH 165 (761)
T ss_pred HHHhhhhcccCCCeehHHHHHHHHHHhHHHHHHHhCCceeeec-CcceEEEeCCCCCcchheeeeehhhhccCcchhhhH
Confidence 45899 8999999999999999999999999999999999987 57899999999999999999999999987766
Q ss_pred ---------CchH-----HHHHHHHHHHHHHHhhhcccceeecCCCcCcchHHHHHHHHHhhccCCCCCCCcchHHHHHH
Q 037647 81 ---------HRNL-----FILFDEIQLLGYGWAGLFRKYLVDSPFMWWPANLVQVSLFRALHEKEKRPKGGLTRLQFFFM 146 (575)
Q Consensus 81 ---------~~~~-----il~~lstq~~G~g~AG~lR~~lV~p~~~iwPs~L~t~al~~aLH~~~~~~~~~~sr~rfF~~ 146 (575)
+|++ ++++++||++|||+||++||++|+|++|.||++|++++|||+||+++++++..++|+|||.+
T Consensus 166 Ii~~~k~fY~~~l~f~~~~ll~lttQ~lGyGwAGl~Rk~lV~Pa~m~WPsnLvqvsLFraLHeke~~~~g~msR~rFF~i 245 (761)
T KOG2262|consen 166 IITAQKAFYKRNLSFGYAFLLVLTTQLLGYGWAGLFRKYLVYPASMWWPSNLVQVSLFRALHEKENKSKGNMSRYRFFLI 245 (761)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhcccHhhhhHhhccCcHhhcCcchhHHHHHHHHHHhhhhhcccCccchhhhhH
Confidence 4554 99999999999999999999999999999999999999999999998877767999999999
Q ss_pred HHHHHHHHHhhhhchhhhcccccchhhhccCcccchhhcccccccccccccccccccccccCCcccccHHHHHHHHHHHH
Q 037647 147 VFASSFAYYVVPGYLFPTLSALSFVCWIWKNSVTAQQIGAGLNGLGIGSFGLDWSTVASFLGSPLASPVFAIINVLAGFI 226 (575)
Q Consensus 147 ~f~~~fv~~~~P~y~fp~Ls~f~~~~wi~p~n~~~~~i~G~~~GlGl~~~tfDW~~i~~~~gspl~~P~~a~~n~~~G~v 226 (575)
+|+++|+|||+|+|+||.|+++||+||+.|+|.+++||+||.+|||++|+||||++|++|+||||.+|+++.+|+++|++
T Consensus 246 vfv~SFiyY~fPgylF~~Ls~~swvcW~~P~s~~~~qi~sg~~GLGi~~~tlDW~~IssylgSPLasP~~a~~n~~~gfv 325 (761)
T KOG2262|consen 246 VFVASFIYYWFPGYLFPILSSFSWVCWIWPSSITANQIGSGLTGLGIGPFTLDWSQISSYLGSPLASPFFAIANVFLGFV 325 (761)
T ss_pred HHHHHHHHHHhhHHHHHHHhhhheeeEeccccHHHHHhcccccccccccccccHHHHHHHcCCcchhhHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcccccCCCCCCcccccCCCCceeceEeeecCCCCcCHHHHhhcCcccccHHHHHHHHHHHHHHHHH
Q 037647 227 LNLYVLVPIAYWTNTYEAKRFPIFSSHTFDSTGQPYNISRILNEATFDLDHDAFNSYSKLYLSPFFAFNYGLSFATLTAT 306 (575)
Q Consensus 227 l~~~ii~P~ly~~n~~~~~~~P~~S~~~fd~~g~~Yn~s~il~~~~~~ld~~~y~~ysp~y~s~~~~~~~~~~fa~~~a~ 306 (575)
+..+|+.|++||+|.|+++++||.|+++||++|++||+++|+| +|++||.+|||+|||+|+++.|+++||++||+++|+
T Consensus 326 l~~~IV~Pi~Y~~n~~~a~~fPI~Ss~lf~~tG~sYnvt~Il~-~~f~ld~~~Y~~ysp~yls~~falsygl~faa~~a~ 404 (761)
T KOG2262|consen 326 LFIYIVLPILYWTNTYDAKYFPIFSSSLFDHTGNSYNVTKILD-SKFELDLDKYQEYSPLYLSTFFALSYGLGFAALSAT 404 (761)
T ss_pred hhhhhhhhhHhhccceecceeceecCcceecCCcEeceeeeec-CccccchHHHhhcCCcceeHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHhhhhhccCCCChhhHHhhhccCCCChHHHHHHHHHHHHHHHHhhhhcCCCCccCh-------
Q 037647 307 ISHVALFDGSDIWQMWKRTTSAARDKFADVHTRLMKKHYEAVPQWWFHIILVATVALSIYACEGFDKQLQLPW------- 379 (575)
Q Consensus 307 i~~~~l~~~~~i~~~~~~~~~~~~~~~~D~h~rlm~~~Y~evP~Wwy~~~l~~s~~l~i~~~~~~~~~~~lP~------- 379 (575)
++|++|+|+||||+ +.|++ .++++|+|.|+||| |||||+|||++++++++++++++++.|+++.|+||
T Consensus 405 i~Hv~Lf~gkdiw~---~~~~~-~~k~~DiHtrlMkk-YKeVP~WWf~~ili~s~~l~~~~~~~~~~~~q~PwWg~~va~ 479 (761)
T KOG2262|consen 405 IVHVALFNGKDIWQ---QTKKA-FNKKMDIHTRLMKK-YKEVPDWWFLAILIVSLGLGLAACEGYKTQVQLPWWGLLVAC 479 (761)
T ss_pred hhhheeeccHHHHH---HHHhc-cccCCCHHHHHHHH-hccCcHHHHHHHHHHHHHHHhhheeeecccccCchHHHHHHH
Confidence 99999999999999 55555 46789999999999 99999999999999999999999999988779999
Q ss_pred --------------------------------------HHHHHHHHHhhHHhHHHHHHHhhhhhhhhhcCCChhHHHHHH
Q 037647 380 --------------------------------------PLANVAFKTYGYISMSQALSFLADFKLGHYMKIPPKSMFLVQ 421 (575)
Q Consensus 380 --------------------------------------Pianm~f~~~g~~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Q 421 (575)
|+|||.||+|||+++.||++|++|+|+|||||||||.||.+|
T Consensus 480 ~ia~vf~iPigii~AtTNq~~GLNiitE~i~Gy~~PgrPiAn~~FK~yGyism~Qal~f~~DlKlghYMKIPPR~mF~~Q 559 (761)
T KOG2262|consen 480 AIAFVFTIPIGIIQATTNQTPGLNIITEYIIGYIYPGRPIANLCFKTYGYISMTQALTFLQDLKLGHYMKIPPRSMFAVQ 559 (761)
T ss_pred HHHHHHhccHHHhhhhccCCccHHHHHHHHHHhhcCCchHHHHHHHHhchhhHHHHHHHHhhccceeeecCChHHHHHHH
Confidence 999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhHHHHHHHHHhhhccCcCCCCCCCCCCCccccchhHHHHHHHHHHHHh------------------------
Q 037647 422 LIGTVVASSVYFGTAWWLLTSVEHICDPSALPEGSPWTCPGDDVFYSASIIWGIVG------------------------ 477 (575)
Q Consensus 422 ligtiv~~~v~~~v~~~~l~~i~~~c~~~l~~~~~~~tc~~~~~~~s~si~wG~iG------------------------ 477 (575)
++||+++++||.+|..|++.+|+|+|+.+ +++.||||+++++|++||+||++|
T Consensus 560 ~v~tivs~~Vn~gv~~W~m~~I~~iC~~~---~~s~~TCP~~rvffnASvIWGlIGP~riF~~~g~Y~~l~wFFLiGa~~ 636 (761)
T KOG2262|consen 560 LVGTIVAGFVNLGVAWWLMYSIPNICTTD---QNSPWTCPSDRVFFNASVIWGLIGPKRIFGSLGIYPGLNWFFLIGALA 636 (761)
T ss_pred HHHHHhheeeeHHhHHHHHhcccccccCC---CCCCccCCCCceEEeceeeeecccchhhcCCCCccCcchHHHHHHHHh
Confidence 99999999999999999999999999999 999999999999999999999999
Q ss_pred ----------------------------cCCCCCCcchhhhhhHHHHHHHHHHHHhhchhhhhhhHHHHHHhhhhhHHHH
Q 037647 478 ----------------------------TGNMPPARAVHYLSWAAVGIFFNYYVYRRFKGWWARHTYILSAALDAGVAFM 529 (575)
Q Consensus 478 ----------------------------~~~~p~~~~~~~~~~~~vg~~~~~~~rrr~~~ww~kYnyvlsAaLdaG~~i~ 529 (575)
.+.+||++..||++|+++|++|||++|||+..||+||||+||||||+|++++
T Consensus 637 pv~vw~~~k~fPk~~w~~~i~~pvl~gg~~~mPpat~vny~sw~iv~fifny~i~r~~~~WW~kYNyvLsaaldaG~a~~ 716 (761)
T KOG2262|consen 637 PVLVWLLQKKFPKKKWIKQINPPVLFGGTANMPPATAVNYTSWAIVGFIFNYYIFRYRRSWWQKYNYVLSAALDAGVAFM 716 (761)
T ss_pred hHHHHHHHHhcchhhhhhccCcceEecccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcccchhHH
Confidence 5678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCccccCCCC-CCCCCCCCCCCCcccccCCCCC
Q 037647 530 GVFLFLTLQSYDIFGPHWWGLDST-DHCPLATCPTAPGIVIEGCPVF 575 (575)
Q Consensus 530 ~lii~f~~~~~~~~~~~WwG~n~~-~~c~~~~~~~~~~~~~~~~~~~ 575 (575)
+++||||+|++++ ..+||| |++ |+|+..+|+..++...+++|.|
T Consensus 717 ~vliffcv~~~~~-~~~WWG-n~~~~~c~~a~cp~~~~v~~~~~~~f 761 (761)
T KOG2262|consen 717 GVLIFFCVQYPGI-SLNWWG-NTVSAGCDLAGCPTAKGVVVSGCPVF 761 (761)
T ss_pred HhHhhheeccCCC-cccccc-CcCCCCCCccCCCcCCeeecCCCCCC
Confidence 9999999999999 667999 887 4999999999999998888875
No 2
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=100.00 E-value=2.4e-153 Score=1284.16 Aligned_cols=522 Identities=34% Similarity=0.733 Sum_probs=500.7
Q ss_pred CCCCC-CCCCCCCceehHHHHHHHHHHHHHHHHhhCCCCCcccCCcceeeecCCCCCCcccceeeehhhhcccCCC----
Q 037647 6 EEVND-SPIEQNQLSVGSISAQIIVLPLGKLMAATLPSKPIRVPLTKWTFSMNPGPFNLKEHVLITIFANCGAGEK---- 80 (575)
Q Consensus 6 ~~~~~-~~~r~p~i~is~~~~ql~~yp~G~~~a~~lP~~~~~~~~~~~~~~lNPGpF~~KEh~li~imA~~a~~~a---- 80 (575)
+.+|+ +.+|+|+++++++++||++||+||+|||+||+++++++| ++|+|||||||+|||++||||||++++.+
T Consensus 40 s~in~~f~lR~p~i~is~~~~qll~yp~Gk~~a~~lP~~~~~~~g--~~~~lNPGPF~~KEh~liti~a~~~~~~~y~~~ 117 (681)
T TIGR00727 40 SGFNMFFSHRVPSISLNTPIIQMLAYPCGKAWAKIIPDWTITIRG--RKYNIIPGPFNVKEHMFITLMYAVSFGAAYTTD 117 (681)
T ss_pred HHHHHhccCCCCceeHHHHHHHHHHHHHHHHHHHHcCcccccccc--ceeccCCCCCChhcceeeeeeeehhccHHHHHH
Confidence 45788 999999999999999999999999999999999999876 78999999999999999999999987665
Q ss_pred ---------CchH-----HHHHHHHHHHHHHHhhhcccceeecCCCcCcchHHHHHHHHHhhccCCCC--CCCcchHHHH
Q 037647 81 ---------HRNL-----FILFDEIQLLGYGWAGLFRKYLVDSPFMWWPANLVQVSLFRALHEKEKRP--KGGLTRLQFF 144 (575)
Q Consensus 81 ---------~~~~-----il~~lstq~~G~g~AG~lR~~lV~p~~~iwPs~L~t~al~~aLH~~~~~~--~~~~sr~rfF 144 (575)
++++ |++++++|++|||+||++||++|||++|+||++|+|++|+|+||++++++ .|++||+|+|
T Consensus 118 ~i~~~~~fy~~~~~~g~~il~~lstq~~G~g~Ag~lRr~lV~p~~~iwPs~L~t~aL~~aLH~~~~~~~~gw~~sr~kfF 197 (681)
T TIGR00727 118 IILAQKLFYKSAFGFGYQFLLSLSTQFIGFGFAGILRRFVVYPARALWPTNLVTITINKALHGKENHEANGWKISRYKFF 197 (681)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhceEeccccCcCCCccHHHHHHHHHhccCcccccccchHHHHHH
Confidence 3444 99999999999999999999999999999999999999999999865433 3578999999
Q ss_pred HHHHHHHHHHHhhhhchhhhcccccchhhhccCcccchhhccccccccccc-ccccccccccccCCcccccHHHHHHHHH
Q 037647 145 FMVFASSFAYYVVPGYLFPTLSALSFVCWIWKNSVTAQQIGAGLNGLGIGS-FGLDWSTVASFLGSPLASPVFAIINVLA 223 (575)
Q Consensus 145 ~~~f~~~fv~~~~P~y~fp~Ls~f~~~~wi~p~n~~~~~i~G~~~GlGl~~-~tfDW~~i~~~~gspl~~P~~a~~n~~~ 223 (575)
+++|+++|+|+|+|+|+||+||.|||+|||+|+|+++|++||+.+|||++| +|||||+|++++++||++|+++++|+++
T Consensus 198 ~~~f~~sfvw~w~P~ylf~~Ls~f~w~cwi~P~n~~~~~i~g~~~GlGl~p~~tfDW~~I~~~~~spL~~P~~a~~n~~~ 277 (681)
T TIGR00727 198 FLVFFASFIWNWFPTYIFQALSTFNWMTWIKPNNINLNQIFGGSTGLGINPISSFDWNQISGYINSPLVYPAWSYLTIYL 277 (681)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhhhccCcchhhhhhhccccCCCcCCcCcccHHHHHhhcCCcccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 8999999987889999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCcccccCCCCCCcccccCCCCceeceEeeecCCCCcCHHHHhhcCcccccHHHHHHHHHHHHHH
Q 037647 224 GFILNLYVLVPIAYWTNTYEAKRFPIFSSHTFDSTGQPYNISRILNEATFDLDHDAFNSYSKLYLSPFFAFNYGLSFATL 303 (575)
Q Consensus 224 G~vl~~~ii~P~ly~~n~~~~~~~P~~S~~~fd~~g~~Yn~s~il~~~~~~ld~~~y~~ysp~y~s~~~~~~~~~~fa~~ 303 (575)
|+++++++++|++||+|.|+++|+|++|+++|||+|++||+|||+| +|++||+||||||||+|++++++++|+.+||++
T Consensus 278 G~~l~~~ii~P~lyy~N~w~~~~lPi~s~~~fd~~G~~Y~vs~il~-~~~~ld~~~y~~ysp~~l~~~~al~yg~~fA~~ 356 (681)
T TIGR00727 278 GCILAFWIVIPAVYYSNTWYCQYLPISSNGLYDNFGHSYNVTEILD-KDNKFDVKKYQSYSPPFYSTTNAVSYGLSFASI 356 (681)
T ss_pred HHHHHHHHHHHHHHHcccccccccCCccchhhhcCCCccccceeeC-CCCcCCHHHHHHhCCccccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhhhhccCCCChhhHHhhhccCCCChHHHHHHHHHHHHHHHHhhhhcCCCCccCh----
Q 037647 304 TATISHVALFDGSDIWQMWKRTTSAARDKFADVHTRLMKKHYEAVPQWWFHIILVATVALSIYACEGFDKQLQLPW---- 379 (575)
Q Consensus 304 ~a~i~~~~l~~~~~i~~~~~~~~~~~~~~~~D~h~rlm~~~Y~evP~Wwy~~~l~~s~~l~i~~~~~~~~~~~lP~---- 379 (575)
+|+++|++|+|||||++++| +++++|+|.|+||| |||||+|||++++++++++++++++.| ++++||
T Consensus 357 ~a~i~h~~l~~~~~i~~~~~------~~~~~D~h~rlM~~-Y~evP~WWy~~~l~is~~~~~~~v~~~--~t~lP~W~~~ 427 (681)
T TIGR00727 357 PLMITHSIIVHGKLLFNALK------DDDYPDPHSNLMKA-YKEVPDWWYLAVFLGFFGMGIATVEHW--PTETPVWGLF 427 (681)
T ss_pred HHHHHHHHHHhhHHHHHHHh------cCCCCChhHHHhhc-CCCCcHHHHHHHHHHHHHHHHHHHhhC--CCCCCHHHHH
Confidence 99999999999999999554 35678999999999 999999999999999999999999999 467999
Q ss_pred -----------------------------------------HHHHHHHHHhhHHhHHHHHHHhhhhhhhhhcCCChhHHH
Q 037647 380 -----------------------------------------PLANVAFKTYGYISMSQALSFLADFKLGHYMKIPPKSMF 418 (575)
Q Consensus 380 -----------------------------------------Pianm~f~~~g~~~~~qa~~~~~DlKlGhY~kiPPR~~F 418 (575)
|+|||+||++|+++++||++|++|||+|||||||||+||
T Consensus 428 lal~l~~i~~iP~~~i~a~t~~~~~ln~l~eli~Gy~~PG~p~a~~~fk~~g~~~~~qa~~~~~DlKlGhY~kiPPR~~F 507 (681)
T TIGR00727 428 VCLIFNFVFLIPTTILQATTNISFGLNVLTEFIVGYALPGRPLAMMIFKTFGYITDGQADNFVSDLKIGHYMKIPPRALF 507 (681)
T ss_pred HHHHHHHHHHHhhhheEeecCCccchhHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcHHHH
Confidence 999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhHHHHHHHHHhhhccCcCCCCCCCCCCCccccchhHHHHHHHHHHHHh---------------------
Q 037647 419 LVQLIGTVVASSVYFGTAWWLLTSVEHICDPSALPEGSPWTCPGDDVFYSASIIWGIVG--------------------- 477 (575)
Q Consensus 419 ~~Qligtiv~~~v~~~v~~~~l~~i~~~c~~~l~~~~~~~tc~~~~~~~s~si~wG~iG--------------------- 477 (575)
.+|++||++|++||++|++|++++++|+|+++ ++++||||+.+++|++||+||++|
T Consensus 508 ~~Q~~gtl~~~~v~~~v~~~~l~~i~~~c~~~---~~~~ftcp~~~~~f~asv~Wg~iGP~r~F~~g~~Y~~l~~~fliG 584 (681)
T TIGR00727 508 RGQCVATIWQIFVQIGVLNWAIGNIDNFCTAD---QNAKYTCPNAVVFFNASVIWGVIGPKRIFSHGYIYPGLKWFWLIG 584 (681)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC---CCCCccCCCccceeehehhhhhcchHHHcCCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999998 999999999999999999999998
Q ss_pred ------------------------------cCCCCCCcchhhhhhHHHHHHHHHHHHhhchhhhhhhHHHHHHhhhhhHH
Q 037647 478 ------------------------------TGNMPPARAVHYLSWAAVGIFFNYYVYRRFKGWWARHTYILSAALDAGVA 527 (575)
Q Consensus 478 ------------------------------~~~~p~~~~~~~~~~~~vg~~~~~~~rrr~~~ww~kYnyvlsAaLdaG~~ 527 (575)
++++||++++|+.+++++|++||+|+||||++||+||||++|||||+|++
T Consensus 585 a~~pi~~~~~~r~~P~~~~~~~n~pv~~~~~g~~~~a~~~n~~s~~~vg~~f~~~irr~~~~ww~kYnYvlsAald~G~a 664 (681)
T TIGR00727 585 ACIGIFFWLVWKKWPKFYPRYLDWPMLFVGTGYIPPATPYNYMYYTSVGLFFQYYMKKHHLNWWEKYNYVLSAGLDTGLV 664 (681)
T ss_pred HHHHHHHHHHHHhcchhhhhhCCccHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 037647 528 FMGVFLFLTLQSYDI 542 (575)
Q Consensus 528 i~~lii~f~~~~~~~ 542 (575)
++++||||+++++++
T Consensus 665 ~~~~iiff~v~~~~~ 679 (681)
T TIGR00727 665 LSAIIIFFCLQLKDT 679 (681)
T ss_pred HHHhHheeEEEeCCC
Confidence 999999999999876
No 3
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=100.00 E-value=1.7e-99 Score=859.41 Aligned_cols=495 Identities=40% Similarity=0.685 Sum_probs=441.1
Q ss_pred CCCC-CCCCCCCceehHHHHHHHHHHHHHHHHhhCCCCCcccCCcceeeecCCCCCCcccceeeehhhhcccCCC-----
Q 037647 7 EVND-SPIEQNQLSVGSISAQIIVLPLGKLMAATLPSKPIRVPLTKWTFSMNPGPFNLKEHVLITIFANCGAGEK----- 80 (575)
Q Consensus 7 ~~~~-~~~r~p~i~is~~~~ql~~yp~G~~~a~~lP~~~~~~~~~~~~~~lNPGpF~~KEh~li~imA~~a~~~a----- 80 (575)
.+|+ +.+|+|.++++++++||++||+||+|+|+||+|+ + +||+|||||||+|||+++|+|||++++.+
T Consensus 34 ~~n~~~~lr~g~~~~~si~~~ll~~~~g~~~~~~lP~~~----~--~~~~lnpgpft~kE~~~iq~~asa~~~~~~~~~~ 107 (654)
T TIGR00728 34 GVNQFFGLRTGSVSISSIVAALLAYPLGKLWALIIPDWE----G--WKFSLNPGPFNVKENNLIQTAASACGGLAYAIFI 107 (654)
T ss_pred HHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHhcCCcc----c--cceecCCCCCChhhheeEEeeeeccccHHHHHHH
Confidence 4688 8999999999999999999999999999999986 2 78999999999999999999999997655
Q ss_pred --------Cch--H---HHHHHHHHH--HHHHHhhhcccceeecCCCcCcchHHHHHHHHHhhccCCCCC-CCcchHHHH
Q 037647 81 --------HRN--L---FILFDEIQL--LGYGWAGLFRKYLVDSPFMWWPANLVQVSLFRALHEKEKRPK-GGLTRLQFF 144 (575)
Q Consensus 81 --------~~~--~---il~~lstq~--~G~g~AG~lR~~lV~p~~~iwPs~L~t~al~~aLH~~~~~~~-~~~sr~rfF 144 (575)
+++ . +++++++|+ +|+++||++||++|+|++|+||+++++++|+|+||++.+.++ ++++| +
T Consensus 108 i~a~~~~~~~~~~~~~~~l~~~~~~~~~lG~~~a~~lRr~lV~~~~l~~P~~la~a~l~~al~~~~~~~~g~~~~r---~ 184 (654)
T TIGR00728 108 LPAQKMFYTSNFSWGYQILLVWSTQLGFLGFGFAGLLRRALVVPAKLPWPSGLATAELFKALHGKFHTANGDTIAK---N 184 (654)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHhHHhhHHHhhhheeCcccccCCcccHHHHHHHHhhhccCccCCCccch---h
Confidence 232 2 689999999 999999999999999999999999999999999987644332 34445 2
Q ss_pred HHHHHHHHHHHhhhhchhhhcccccchhhhccCcccchhhcccccccccccccccccccccccCCcccccHHHHHHHHHH
Q 037647 145 FMVFASSFAYYVVPGYLFPTLSALSFVCWIWKNSVTAQQIGAGLNGLGIGSFGLDWSTVASFLGSPLASPVFAIINVLAG 224 (575)
Q Consensus 145 ~~~f~~~fv~~~~P~y~fp~Ls~f~~~~wi~p~n~~~~~i~G~~~GlGl~~~tfDW~~i~~~~gspl~~P~~a~~n~~~G 224 (575)
++.+ |.++|+.++.++|+||+.|++..++ ++| |+|+++++|||+++.+++|+|+++|+++++|+++|
T Consensus 185 l~~~---------~~~~f~~~~~~~~~~~~~p~~~~~~-~fg---glg~~~~~f~w~~s~~~~g~gli~p~~~~~~~~~G 251 (654)
T TIGR00728 185 LLRV---------LLKYFSSSFLWSFVSWFFPGFTAFQ-TFG---GLGSGSIGFGWQQSSAYIGSGLITPFTVGLNMLLG 251 (654)
T ss_pred HHHh---------HHHHHHHHHHHHHHHHHhcCCcccc-ccc---cccccccceecHHhHhhcCCCccCCHHHHHHHHHH
Confidence 2222 7888888999999999999988875 454 89999999999998778899999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcccccCCCCCCcccccCCCCceec-eEeeecCC-CCcCHHHHhhcCcccccHHHHHHHHHHHHH
Q 037647 225 FILNLYVLVPIAYWTNTYEAKRFPIFSSHTFDSTGQPYNI-SRILNEAT-FDLDHDAFNSYSKLYLSPFFAFNYGLSFAT 302 (575)
Q Consensus 225 ~vl~~~ii~P~ly~~n~~~~~~~P~~S~~~fd~~g~~Yn~-s~il~~~~-~~ld~~~y~~ysp~y~s~~~~~~~~~~fa~ 302 (575)
.+++|++++|++||+|+|+++++|++|++.||++|.+||. +++++ ++ .++|+++|++|||+|+++++ |+.+|+.
T Consensus 252 ~vl~~~ii~P~l~~~n~~~~~~~p~~s~~~~~~~~~~y~~~~~il~-~~~~~l~~~~~~~~s~~~~~~~~---~~~~~~~ 327 (654)
T TIGR00728 252 VILAFGIVLPILYYKNTWPADADPIDSSSTIDSTGVRYNSVGLIVV-DGLWTLVKPLYPIYSPLVLSIDF---YALLFNA 327 (654)
T ss_pred HHHHHHHHHHHHHhcCccccccCCCcchhhhcCCCceeeeeeEEEe-CCCceecHHHHHHhCcceeeHHH---HHHHHHH
Confidence 9999999999999999999999999999999999999999 99998 66 68999999999999999999 9999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhhhhhccCCCChhhHHhhh-------ccCCCChHHHHHHHHHHHHHHHHhhhhcCCCC
Q 037647 303 LTATISHVALFDGSDIWQMWKRTTSAARDKFADVHTRLMKK-------HYEAVPQWWFHIILVATVALSIYACEGFDKQL 375 (575)
Q Consensus 303 ~~a~i~~~~l~~~~~i~~~~~~~~~~~~~~~~D~h~rlm~~-------~Y~evP~Wwy~~~l~~s~~l~i~~~~~~~~~~ 375 (575)
++++++|++++|+|++++++|+. .++.+|.|.|+||+ +|||||+|||+.++++++++++++++.++.++
T Consensus 328 ~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~~~~~~~~vP~ww~~~~~~~~~~~~~~~~~~~~~~~ 403 (654)
T TIGR00728 328 FSDTIYSFALAHGRDIISARRDH----YKLGRDDHVRLLSRDEDLKVKNYKEVPAWWYLSLLLVSFGLGIVVVEYYFGIT 403 (654)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHh----hhccCCCChHHHhhcccccccccCcCcHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999865432 23345666666555 04999999999999999999999998886557
Q ss_pred ccCh---------------------------------------------HHHHHHHHHhhHHhHHHHHHHhhhhhhhhhc
Q 037647 376 QLPW---------------------------------------------PLANVAFKTYGYISMSQALSFLADFKLGHYM 410 (575)
Q Consensus 376 ~lP~---------------------------------------------Pianm~f~~~g~~~~~qa~~~~~DlKlGhY~ 410 (575)
++|| |++||++|++++++++||.|++||||+|||+
T Consensus 404 ~~p~w~~ilal~l~~i~~~~~~~~~g~tnp~~~l~~~~~li~g~~~pg~~~a~l~~~~~~~~~~~qA~~~~qDlK~G~y~ 483 (654)
T TIGR00728 404 QLPWWGVIVALIIAFVLAIPIGILAGITNPVSGLNIITELIIGYILPGRPLANLAFKAYGFITAQQAGDFMQDLKTGHYM 483 (654)
T ss_pred CCcHHHHHHHHHHHHHHHHhhhheEEeecccchhhHHHHHhheeecCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7898 8889999999999999999999999999999
Q ss_pred CCChhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCcCCCCCCCCCCCccccchhHHHHHHHHHHHHh-------------
Q 037647 411 KIPPKSMFLVQLIGTVVASSVYFGTAWWLLTSVEHICDPSALPEGSPWTCPGDDVFYSASIIWGIVG------------- 477 (575)
Q Consensus 411 kiPPR~~F~~Qligtiv~~~v~~~v~~~~l~~i~~~c~~~l~~~~~~~tc~~~~~~~s~si~wG~iG------------- 477 (575)
|+|||.||.+|++||++|+++++++++|+.+++++ ++++|+||.+++++++|++||++|
T Consensus 484 ~~pPR~~f~~Qiig~~vg~~v~~~v~~~~~~~~~~--------~~~~~~~p~a~~~~~aa~~~g~~Gp~~f~~~~~y~~~ 555 (654)
T TIGR00728 484 KAPPRAQFAAQLIGTIVGSLVNAPVLEWLYHAIGN--------QNNNFTCPNALVFYNASLIWGVIGPKIFSGKGLYCGL 555 (654)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--------CCCCccCCcccchhhheeeeccccchhcCCCCccHHH
Confidence 99999999999999999999999999999988763 557899999999999999998655
Q ss_pred -----------------------------------cCCCCCCcchhhhhhHHHHHHHHHHHHhhchhhh--hhhHHHHHH
Q 037647 478 -----------------------------------TGNMPPARAVHYLSWAAVGIFFNYYVYRRFKGWW--ARHTYILSA 520 (575)
Q Consensus 478 -----------------------------------~~~~p~~~~~~~~~~~~vg~~~~~~~rrr~~~ww--~kYnyvlsA 520 (575)
..++|+..+.++.++.++|.++++++|||+++|| +||||++||
T Consensus 556 ~~~~l~G~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vG~~~~~~~~rr~~~~~~~~~y~~~laa 635 (654)
T TIGR00728 556 MWFFLVGVGAVLVWLVRKLFPKWIKYINPPVAVGGGGYIPPATAVNYSTWAAVGGFFNYRWRKNKRADWKAEKYNYVLAA 635 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHccchhhhcCHHHhhhhhhccCCcchhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Confidence 2345666677888888999999999999999887 999999999
Q ss_pred hhhhhHHHHHHHHHHHHhc
Q 037647 521 ALDAGVAFMGVFLFLTLQS 539 (575)
Q Consensus 521 aLdaG~~i~~lii~f~~~~ 539 (575)
|||+||+|+++++||++++
T Consensus 636 gL~~G~al~gviiff~~~~ 654 (654)
T TIGR00728 636 GLIAGEALAGVIIFFCLGL 654 (654)
T ss_pred HHhhhHHHHHHHHHHhccC
Confidence 9999999999999999985
No 4
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=100.00 E-value=4e-100 Score=861.30 Aligned_cols=495 Identities=35% Similarity=0.705 Sum_probs=456.1
Q ss_pred CCCC-CCCCCCCceehHHHHHHHHHHHHHHHHhhCCCCCcccCCcceeeecCCCCCCcccceeeehhhhcccCCC-----
Q 037647 7 EVND-SPIEQNQLSVGSISAQIIVLPLGKLMAATLPSKPIRVPLTKWTFSMNPGPFNLKEHVLITIFANCGAGEK----- 80 (575)
Q Consensus 7 ~~~~-~~~r~p~i~is~~~~ql~~yp~G~~~a~~lP~~~~~~~~~~~~~~lNPGpF~~KEh~li~imA~~a~~~a----- 80 (575)
.+|+ +.+|.+.++.+++++||++||+||+++|. +++++|||||||+|||+++|+|||++++.+
T Consensus 19 ~~n~y~~lk~g~~~~~si~~~il~~~~~~~~~~~-----------~~~~~ln~gp~~~kE~~~vq~~asa~~~~~~a~~~ 87 (624)
T PF03169_consen 19 AINQYFGLKTGWISIASIFAAILSFPIGRLLARI-----------GWRFSLNPGPFTIKENNLVQTMASAAGGMAYAAGF 87 (624)
T ss_pred HHHHHHhccCcchhhHHHHHHHHHHHHHHHHHhh-----------ccccccCCCCCCHHHHHHHHHHHHHhhhhhhhhhH
Confidence 4677 88999999999999999999999999981 156779999999999999999999987743
Q ss_pred ----------CchH-----HHHHHHHHHHHHHHhhhcccceeecCCCcCcchHHHHHHHHHhhccCCCCCCCcchHHHHH
Q 037647 81 ----------HRNL-----FILFDEIQLLGYGWAGLFRKYLVDSPFMWWPANLVQVSLFRALHEKEKRPKGGLTRLQFFF 145 (575)
Q Consensus 81 ----------~~~~-----il~~lstq~~G~g~AG~lR~~lV~p~~~iwPs~L~t~al~~aLH~~~~~~~~~~sr~rfF~ 145 (575)
++++ +++++++|++|+++||++||++|+|++|+||+++++++++++||+++. ++.+++|+|+|.
T Consensus 88 i~~ipa~~~~~~~~~~~~~~l~~~~~~~lG~~~a~~lR~~lV~~~~l~fP~~~a~a~~i~alh~~~~-~~~~~~~~~~~~ 166 (624)
T PF03169_consen 88 IAAIPALLFLGQPFSFGYLILWTLSTQLLGYGFAGPLRRFLVYPEKLPFPSGLATAELINALHSGGG-WREAKSRAKFFG 166 (624)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhheeccccEEecccccCcchhHHHHHHHHhccCcc-chhhhhhHhHHH
Confidence 3443 999999999999999999999999999999999999999999999872 223579999999
Q ss_pred HHHHHHHHHHhhhhchhhhcccccchhhhccCcccchhhcccccccccccccccccccccccCCcccccHHHHHHHHHHH
Q 037647 146 MVFASSFAYYVVPGYLFPTLSALSFVCWIWKNSVTAQQIGAGLNGLGIGSFGLDWSTVASFLGSPLASPVFAIINVLAGF 225 (575)
Q Consensus 146 ~~f~~~fv~~~~P~y~fp~Ls~f~~~~wi~p~n~~~~~i~G~~~GlGl~~~tfDW~~i~~~~gspl~~P~~a~~n~~~G~ 225 (575)
++|+++|+|+|+|+|+||+|+.++|+||++|+|+++++++|+.+ ++||||++. +|+|+++|+++++|+++|.
T Consensus 167 ~~~~~~~i~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~------~~~dws~~~--~g~g~i~p~~~~ls~~~G~ 238 (624)
T PF03169_consen 167 IAFLGSFIYYWLPQYIFPALSSFSWPCWIAPNNPWLNNLFGGWS------FSFDWSPIL--IGSGLIVPLWAQLSMFLGA 238 (624)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccceeeccccchHhhhcccce------eeEeecHHh--cCCCeeccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998755 999999974 7999999999999999999
Q ss_pred HHHHHHHHHHHHhc-CcccccCCCCCCcccccCCCCceeceEeeecCCCCcCHHHHhhcCcccccHHHHHHHHHHHHHHH
Q 037647 226 ILNLYVLVPIAYWT-NTYEAKRFPIFSSHTFDSTGQPYNISRILNEATFDLDHDAFNSYSKLYLSPFFAFNYGLSFATLT 304 (575)
Q Consensus 226 vl~~~ii~P~ly~~-n~~~~~~~P~~S~~~fd~~g~~Yn~s~il~~~~~~ld~~~y~~ysp~y~s~~~~~~~~~~fa~~~ 304 (575)
+++|+++.|++||+ |.|+++++|++|+++||++|+ +|.++|+++|++||+++.++.+.++|+..|+.++
T Consensus 239 v~~w~ii~P~l~~~~~~~~~~~~p~~s~~~~~~~~~----------~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~ 308 (624)
T PF03169_consen 239 VLAWGIIIPILYYSGNAWGGAYLPFNSNSLFDNNGS----------SDGTLNWTKYIGYGPMYGSGLFALSYGWSFAALT 308 (624)
T ss_pred HHHHHhcCCeeeeeccccCCccccccchhhhhhcCc----------cccccCHHHHHHHHHHHHhHHHHHhhcccchhhH
Confidence 99999999999998 999999999999999999998 6778999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHhh---hhhccCCCChhhHHhhhccCCCChHHHHHHHHHHHHHHHHhhhhcCCCCccCh--
Q 037647 305 ATISHVALFDGSDIWQMWKRTT---SAARDKFADVHTRLMKKHYEAVPQWWFHIILVATVALSIYACEGFDKQLQLPW-- 379 (575)
Q Consensus 305 a~i~~~~l~~~~~i~~~~~~~~---~~~~~~~~D~h~rlm~~~Y~evP~Wwy~~~l~~s~~l~i~~~~~~~~~~~lP~-- 379 (575)
++++|.+++|+|++++++++.+ ++.+++++|+|+++|++ |||||+|||+..+++++++++++++.+..++++|+
T Consensus 309 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~vP~ww~~~~~~~~~v~~~~~~~~~~~~~~~p~~~ 387 (624)
T PF03169_consen 309 ASIVHAILWHWKAIWQAFKQSKSSQRSSKSSEDDPHYRLMRT-YKEVPMWWYLAGLVVSFVLAIIVVEAWFGQTQMPWWG 387 (624)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccccccccccCCchhhhhhh-cCCcchHHHHHHHHHHHHHHHHHHhhhhcccCCchhh
Confidence 9999999999999998665331 12245678999999999 99999999999999999999999999865578998
Q ss_pred ---------------------------------------------HHHHHHHHHhhHHhHHHHHHHhhhhhhhhhcCCCh
Q 037647 380 ---------------------------------------------PLANVAFKTYGYISMSQALSFLADFKLGHYMKIPP 414 (575)
Q Consensus 380 ---------------------------------------------Pianm~f~~~g~~~~~qa~~~~~DlKlGhY~kiPP 414 (575)
|++||+++++++++++||.|+++|||+|||+|+||
T Consensus 388 ~ilai~la~v~~~~~~~~~g~t~~~P~~~~~~~sqli~g~~~pg~~~a~l~~~~~~~~~~~qa~~~~~DlK~G~~l~~~P 467 (624)
T PF03169_consen 388 LILAILLAFVFSIPSGRITGETGINPVSGLNILSQLIFGLLLPGNPIANLLFGGYGYAAASQAGDLMQDLKTGHYLGIPP 467 (624)
T ss_pred hHHHHHHHHHHHHHHHHHhhhcCCCcchhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCh
Confidence 78899999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhhhhhHHHHHHHHHhhhccCcCCCCCCCCCCCccccchhHHHHHHHHHHHHh-----------------
Q 037647 415 KSMFLVQLIGTVVASSVYFGTAWWLLTSVEHICDPSALPEGSPWTCPGDDVFYSASIIWGIVG----------------- 477 (575)
Q Consensus 415 R~~F~~Qligtiv~~~v~~~v~~~~l~~i~~~c~~~l~~~~~~~tc~~~~~~~s~si~wG~iG----------------- 477 (575)
|.||.+|++|+++|++|++++++++ +.++.|.++ ++++++||.+++++.++++||++|
T Consensus 468 r~~f~~Q~iG~~ig~~v~~~v~~l~--~~~~~~~~~---~~~~~~~~ap~a~~~aav~~g~~~~~~~~~~~~~~~~~~~G 542 (624)
T PF03169_consen 468 RAQFYAQIIGTIIGAFVAVAVMRLL--NQAYPCGPD---QGDSFSCPAPQAFAWAAVAWGLIGPQRGLPYSALPWGFLIG 542 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHhhccCcc---ccccCcCcchHHHHHHHHHHHhcCCcccchHHHHHHHHHHH
Confidence 9999999999999999999999988 678999877 666999999999999999999986
Q ss_pred ----------------------cCCCCCCcchhhhhhHHHHHHHHHHHHhhchhhhhhhHHHHHHhhhhhHHHHHHHHHH
Q 037647 478 ----------------------TGNMPPARAVHYLSWAAVGIFFNYYVYRRFKGWWARHTYILSAALDAGVAFMGVFLFL 535 (575)
Q Consensus 478 ----------------------~~~~p~~~~~~~~~~~~vg~~~~~~~rrr~~~ww~kYnyvlsAaLdaG~~i~~lii~f 535 (575)
...+++..+.+++.++++|.++|+++||||++||+||||++|||||+|++++++++++
T Consensus 543 ~~~~i~~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~y~~~laagl~aG~~l~~li~~~ 622 (624)
T PF03169_consen 543 AVLPILFWLLQRKFPSPLAFGGASSIGFYLPSNYTSAIFIGGLFQFYWRRRYPKWWEKYNYVLAAGLIAGEALMGLIIAF 622 (624)
T ss_pred HHHHHHHHHHHhhCChhheeeecccccccchhHHHHHHHHHHHHHHHhhhcchhHHHhHhhHHHHHHHHHHHHHHHHHHH
Confidence 1225556778899999999999999999999999999999999999999999999998
Q ss_pred HH
Q 037647 536 TL 537 (575)
Q Consensus 536 ~~ 537 (575)
++
T Consensus 623 ~~ 624 (624)
T PF03169_consen 623 LV 624 (624)
T ss_pred hC
Confidence 64
No 5
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=100.00 E-value=2.1e-32 Score=305.49 Aligned_cols=429 Identities=15% Similarity=0.085 Sum_probs=281.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCcccCCcceeeecCCCCCCcccceeeehhhhcccCCC------------C--ch--H-
Q 037647 22 SISAQIIVLPLGKLMAATLPSKPIRVPLTKWTFSMNPGPFNLKEHVLITIFANCGAGEK------------H--RN--L- 84 (575)
Q Consensus 22 ~~~~ql~~yp~G~~~a~~lP~~~~~~~~~~~~~~lNPGpF~~KEh~li~imA~~a~~~a------------~--~~--~- 84 (575)
++.+.++++.+-|.+. ++|++||+++|++|+++++.+ + ++ +
T Consensus 35 sI~aAil~~~ilr~~~----------------------~~t~~EnnivQT~asA~~~~ag~~~~lPAl~~lg~~~~~~~~ 92 (591)
T TIGR00733 35 SIPAAVISMAVLMAFR----------------------DRSILENNMVQTAASAAGTLSSVIFVLPALLMLGYWTEFPYW 92 (591)
T ss_pred hHHHHHHHHHHHHHhc----------------------cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCHH
Confidence 5566777777777441 369999999999999987544 2 23 2
Q ss_pred --HHHHHHHHHHHHHHhhhcccceeecCCCcCcchHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHHHHhhhhchh
Q 037647 85 --FILFDEIQLLGYGWAGLFRKYLVDSPFMWWPANLVQVSLFRALHEKEKRPKGGLTRLQFFFMVFASSFAYYVVPGYLF 162 (575)
Q Consensus 85 --il~~lstq~~G~g~AG~lR~~lV~p~~~iwPs~L~t~al~~aLH~~~~~~~~~~sr~rfF~~~f~~~fv~~~~P~y~f 162 (575)
++++++..++|..++.||||.+|.++++.||+..+++.++++-.+ . + +.+|.|.+...++.+++|.++++ +
T Consensus 93 ~~~~~~~~gg~lGvlf~iPLRr~~I~~~~L~fP~G~A~Ae~l~~g~~---g-~-~~~~~~~l~~g~~~s~~~~~~~~--~ 165 (591)
T TIGR00733 93 ITTVICALGGSLGVLFTIPLRRAFVVESKLPYPEGVACAEVLKAGDK---A-R-NGTGAKPIAYGGILASIYAFLGS--L 165 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHcccc---c-c-chhhHHHHHHHHHHHHHHHHHHH--h
Confidence 888999999999999999999999999999999999999997422 1 1 24688899999999999998843 1
Q ss_pred hhcccccchhhhccCcccchhhcccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 037647 163 PTLSALSFVCWIWKNSVTAQQIGAGLNGLGIGSFGLDWSTVASFLGSPLASPVFAIINVLAGFILNLYVLVPIAYWTNTY 242 (575)
Q Consensus 163 p~Ls~f~~~~wi~p~n~~~~~i~G~~~GlGl~~~tfDW~~i~~~~gspl~~P~~a~~n~~~G~vl~~~ii~P~ly~~n~~ 242 (575)
.... ...-.|.. . |.+..-+++|||+ +++|.++++|..+.+++++|.+++|+++.|.+..+.+.
T Consensus 166 ~~~~-~~~~~~~~---------~----g~~~~~~~~~~Sp--alvG~G~ivG~~v~~s~~~G~vlaWgvl~P~l~~~~~~ 229 (591)
T TIGR00733 166 RVWS-GTLSAAKL---------V----GRRALYFGSDLSL--ALIGVGYLVGLNIGFAMFLGGAIAWGVAIPIYTAKMGS 229 (591)
T ss_pred ccCC-chHHHHHh---------c----CCcceEEEecccH--HHHcCceeeChHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 1111 11111111 1 1122235689998 78999999999999999999999999999999865321
Q ss_pred cccCCCCCCcccccCCCCceeceEeeecCCCCcCHHHHhhcCcccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 037647 243 EAKRFPIFSSHTFDSTGQPYNISRILNEATFDLDHDAFNSYSKLYLSPFFAFNYGLSFATLTATISHVALFDGSDIWQMW 322 (575)
Q Consensus 243 ~~~~~P~~S~~~fd~~g~~Yn~s~il~~~~~~ld~~~y~~ysp~y~s~~~~~~~~~~fa~~~a~i~~~~l~~~~~i~~~~ 322 (575)
....| +.. ....+-.++++|... -+++++.+.. ++...|.+++..
T Consensus 230 -~~~~~-----------------------~~~-~~~~vw~~~vR~iGv---------g~m~~~gl~~-l~~~~~~~~~~~ 274 (591)
T TIGR00733 230 -PGDLS-----------------------ALD-LAWTIWSTKVRYIGV---------GAIVVAALWT-LLKLRGPIARGI 274 (591)
T ss_pred -CCCcc-----------------------HHH-HHHHHHhcccchhhH---------HHHHHHHHHH-HHHHHHHHHHHH
Confidence 10000 000 001122234444333 4445555555 556677766655
Q ss_pred HHh-hhh-hccCCCChhhHHhhhccCCCChHHHHHHHH----------------------------HHHHHHHHhhh---
Q 037647 323 KRT-TSA-ARDKFADVHTRLMKKHYEAVPQWWFHIILV----------------------------ATVALSIYACE--- 369 (575)
Q Consensus 323 ~~~-~~~-~~~~~~D~h~rlm~~~Y~evP~Wwy~~~l~----------------------------~s~~l~i~~~~--- 369 (575)
|.. +.. ++++++|. -|. .+|+|.|+-..+++ ++++++++.+.
T Consensus 275 ~~~~~~~~~~~~~~~~----~r~-~~dip~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~vl~f~~a~v~g 349 (591)
T TIGR00733 275 KAGLEAARRRQAGEAV----LRT-EEDLPINIVLTLVALFVIPLADFLLYAPILHNIGMAIAVMAVLMLIIGFFVAAIAG 349 (591)
T ss_pred HHHHHHhccccccccc----ccc-cccccHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 422 111 11112222 244 57788775332111 11122222221
Q ss_pred -hcCC-CCc-cCh------------------------------HHHHHHHHHhhHHhHHHHHHHhhhhhhhhhcCCChhH
Q 037647 370 -GFDK-QLQ-LPW------------------------------PLANVAFKTYGYISMSQALSFLADFKLGHYMKIPPKS 416 (575)
Q Consensus 370 -~~~~-~~~-lP~------------------------------Pianm~f~~~g~~~~~qa~~~~~DlKlGhY~kiPPR~ 416 (575)
..+. .++ -|+ -.+|++.++....+++||-|++||||+||.++.+||+
T Consensus 350 ~~~G~iGts~nPvsg~~~~t~l~~a~~~~~~g~~~~~~~~~~~v~~~L~~g~vv~~aa~~AgD~mqDlKtG~LlGatPr~ 429 (591)
T TIGR00733 350 YMAGLVGSSNSPISGIGIMSVLFTALILKGLGLSGTGSQIPELMAATIFTAAVVCTAAAISNDNLQDLKTGYLVGATPWR 429 (591)
T ss_pred HHhhhcCCCCCcHHHHHHHHHHHHHHHHHhcCcccCccccchhHHHHHHHHHHHHHHHHHHHHHhHhhHhhhhcCCCHHH
Confidence 1111 011 244 0124566667778899999999999999999999999
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHhhhccCcCCCCCCCCCCCccccchhHHHHHHH-------HHH------HHh-----c
Q 037647 417 MFLVQLIGTVVASSVYFGTAWWLLTSVEHICDPSALPEGSPWTCPGDDVFYSASI-------IWG------IVG-----T 478 (575)
Q Consensus 417 ~F~~Qligtiv~~~v~~~v~~~~l~~i~~~c~~~l~~~~~~~tc~~~~~~~s~si-------~wG------~iG-----~ 478 (575)
|+.+|++|+++|+++...++..+.+++ ++-.+.-.++++.+.+|.+..+.+.+- -|. ++| .
T Consensus 430 Q~~aq~iG~~vg~~v~~~v~~ll~~ay-g~~~~~~~~~~~~l~APqA~l~~ava~gi~~~~l~~~~i~~ga~~g~~l~~~ 508 (591)
T TIGR00733 430 QQVALIIGTFVGALVMAPVLNLLIKAY-GIAGTPTAKGENALPAPQAFLMAAVTEGVFTGTLEWTMVFIGAGIGIALIII 508 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccCCCccccCCCHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998777665 221111011456699998877764421 121 122 0
Q ss_pred --------CC--CCC-------CcchhhhhhHHHHHHHHHHHHhhchhh------hhhhHHHHHHhhhhhHHHHHHHHHH
Q 037647 479 --------GN--MPP-------ARAVHYLSWAAVGIFFNYYVYRRFKGW------WARHTYILSAALDAGVAFMGVFLFL 535 (575)
Q Consensus 479 --------~~--~p~-------~~~~~~~~~~~vg~~~~~~~rrr~~~w------w~kYnyvlsAaLdaG~~i~~lii~f 535 (575)
.. .|+ +.|.+++..+++|.+..++++||+++- -++|.+++|+||.+||+++++++.+
T Consensus 509 ~~~~~~~~~~~~~p~lavgig~yLP~~~s~~~~iG~li~~~~~r~~~~~~~~~~~~~~~g~~vASGLIaGE~l~Gv~~A~ 588 (591)
T TIGR00733 509 DEILAKRGSKFRTPVMAVGVGIYLPLSLGVPILLGAFLARILVSRGRKEGESFTDKKRLGVLGAAGLIVGESLTGVVFAA 588 (591)
T ss_pred HHHhhhcccccCCchhHHHHHhhcchhHHHHHHHHHHHHHHHHHhcccccchhhhhhceeeEEecHhhcchHHHHHHHHH
Confidence 11 222 125567889999999999999986531 1467899999999999999999864
Q ss_pred H
Q 037647 536 T 536 (575)
Q Consensus 536 ~ 536 (575)
.
T Consensus 589 ~ 589 (591)
T TIGR00733 589 I 589 (591)
T ss_pred H
Confidence 3
No 6
>COG1297 Predicted membrane protein [Function unknown]
Probab=99.82 E-value=9.8e-19 Score=189.48 Aligned_cols=422 Identities=16% Similarity=0.165 Sum_probs=246.7
Q ss_pred CCCCcccceeeehhhhcccCCC---------------CchH-----HHHHHHHHHHHHHHhhhcccceeecCCCcCcchH
Q 037647 59 GPFNLKEHVLITIFANCGAGEK---------------HRNL-----FILFDEIQLLGYGWAGLFRKYLVDSPFMWWPANL 118 (575)
Q Consensus 59 GpF~~KEh~li~imA~~a~~~a---------------~~~~-----il~~lstq~~G~g~AG~lR~~lV~p~~~iwPs~L 118 (575)
.++|+-||+++|++|++++..+ .|++ ...+.....+|..|..+|||.+|.++++.||+..
T Consensus 63 ~~~silENNmVQT~ASAagtlsa~vIFviPgl~m~g~w~~fpf~~t~~i~~lggiLGvlftiPLRra~Iv~skLPyPeGv 142 (624)
T COG1297 63 KGSSILENNMVQTQASAAGTLSAGVIFVLPGLLMLGYWSGFPFWQTAIICALGGILGVLFTIPLRRAMIVESKLPYPEGV 142 (624)
T ss_pred CccchhhhHHHHHHHhhhccccccEEEechhHHhhccccCCcHHHHHHHHHHHhhcceEEEEEeeeeeeccCCCCCCCch
Confidence 3889999999999999998655 2443 5556667899999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHHHHhhhhchhhhcccccchhhhccCcccchhhcccccccccccccc
Q 037647 119 VQVSLFRALHEKEKRPKGGLTRLQFFFMVFASSFAYYVVPGYLFPTLSALSFVCWIWKNSVTAQQIGAGLNGLGIGSFGL 198 (575)
Q Consensus 119 ~t~al~~aLH~~~~~~~~~~sr~rfF~~~f~~~fv~~~~P~y~fp~Ls~f~~~~wi~p~n~~~~~i~G~~~GlGl~~~tf 198 (575)
+++.++++..+++... +-.|-..+......+|.++-+=+--+-+. +-+|.. .++ +..-+..
T Consensus 143 AaAEvL~~g~~~~gd~----~g~~~i~~g~~~~~~~~~l~~g~~~~~~~--~~~~~~----------~~~---~~~~lg~ 203 (624)
T COG1297 143 AAAEVLKAGNQREGDA----SGIKLIALGGALAALYSLLASGLRVIASS--LSAAFS----------VGR---AAFALGL 203 (624)
T ss_pred hHHHHHHhcCCCCCCc----ccchhhhhhhHHHHHHHHHhccceeehhh--HHHHHH----------hcc---hhhhhcc
Confidence 9999999997443322 45556667777778887776521111111 111221 111 1122334
Q ss_pred cccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCCcccccCCCCceeceEeeecCCCCcCHH
Q 037647 199 DWSTVASFLGSPLASPVFAIINVLAGFILNLYVLVPIAYWTNTYEAKRFPIFSSHTFDSTGQPYNISRILNEATFDLDHD 278 (575)
Q Consensus 199 DW~~i~~~~gspl~~P~~a~~n~~~G~vl~~~ii~P~ly~~n~~~~~~~P~~S~~~fd~~g~~Yn~s~il~~~~~~ld~~ 278 (575)
|.+. +.+|.+-++++.+.+-+++|.+++|.+.+|++-+... .| +|.++-.+
T Consensus 204 ~~S~--AliG~GylvGl~~~iaml~G~~iaWgvavP~~~~~~~-----~p----------------------~~~~~~~~ 254 (624)
T COG1297 204 GLSL--ALIGAGYLVGLPAGIAMLIGIFIAWGVAVPLLTLIVP-----GP----------------------SDQEAGVQ 254 (624)
T ss_pred cccH--HHhCceEEecchHHHHHHHHHHHHHHHHHHHHHhccc-----CC----------------------CchhHHHH
Confidence 5555 5688999999999999999999999999997755422 11 11222122
Q ss_pred HHhhcCc--ccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----HHHhhhhh---c--cCCCChhhHHhhh--cc
Q 037647 279 AFNSYSK--LYLSPFFAFNYGLSFATLTATISHVALFDGSDIWQM----WKRTTSAA---R--DKFADVHTRLMKK--HY 345 (575)
Q Consensus 279 ~y~~ysp--~y~s~~~~~~~~~~fa~~~a~i~~~~l~~~~~i~~~----~~~~~~~~---~--~~~~D~h~rlm~~--~Y 345 (575)
+.+-+|+ +|+-+ +-..+.+..+ ++--.|.+.+. ++..|.++ . +.|+|...|.|.- -+
T Consensus 255 a~~vW~s~VrfIGa--------G~i~i~~~wt--l~~l~~pi~~gi~~~f~~~r~~~~~~~~~rte~Dl~~~~~~~~~~~ 324 (624)
T COG1297 255 AWKVWSSKVRFIGA--------GAIAIAAIWT--LISLLGPILRGIKATFESARGRRRAGAVSRTERDLPPKLVLLVLLA 324 (624)
T ss_pred HHHHhhheeEEeeh--------hHHHHHHHHH--HHHHHhHHHHHHHHHHHHhhcccccccccchhhcCChhhHHHHHHH
Confidence 2222221 34433 2222222222 33444444443 33222110 0 1233444333210 01
Q ss_pred ----------------CCCChHHHHHH--HHHHHHHHHHhh--hhcCC----CCccCh----------------------
Q 037647 346 ----------------EAVPQWWFHII--LVATVALSIYAC--EGFDK----QLQLPW---------------------- 379 (575)
Q Consensus 346 ----------------~evP~Wwy~~~--l~~s~~l~i~~~--~~~~~----~~~lP~---------------------- 379 (575)
+--|.=|++++ .+++++.++.+. ..|-. ...-|+
T Consensus 325 ~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~v~GflvaAv~gymagLVgSssspiSGi~i~~v~~~~l~~l~~G~~~ 404 (624)
T COG1297 325 TVVALGLLLAHFLRGTPLSSCRWLLVVVMVLIAVVIGFLVAAVCGYMAGLVGSSSSPISGIGILSVTLLSLLILILGQSG 404 (624)
T ss_pred HHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchHHHHHHHHHHHHHHHhcccc
Confidence 11123333221 112222222111 11100 111233
Q ss_pred -----------H-HHHHHHHHhhHHhHHHHHHHhhhhhhhhhcCCChhHHHHHHHHhhhhhhhHHHHHHHHHhhhccCcC
Q 037647 380 -----------P-LANVAFKTYGYISMSQALSFLADFKLGHYMKIPPKSMFLVQLIGTVVASSVYFGTAWWLLTSVEHIC 447 (575)
Q Consensus 380 -----------P-ianm~f~~~g~~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Qligtiv~~~v~~~v~~~~l~~i~~~c 447 (575)
+ ..+++-.+....++.++-|.+||||+||+.+..||.|+.+|++|+++++++-..|++..-+++-=.-
T Consensus 405 ~~~~~~~~~~~~~~~~~~t~~vv~a~A~is~DnlQDLKTG~LvgATPwkQqvaliiG~~~~alvi~pvL~ll~~aYgf~g 484 (624)
T COG1297 405 GLFIDPLMRKFLVAATLFTASVVAAVAAISNDNLQDLKTGYLVGATPWKQQVALIIGCFVGALVIAPVLELLNKAYGFAG 484 (624)
T ss_pred ccccCcccchhHHHHHHHHHHHHHHHHHhhccchhhhhhCeeecCChHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCcCC
Confidence 1 1244445566688889999999999999999999999999999999999999999987665542110
Q ss_pred CCCCCCCCCCccccchhHHHHHHH---------HHHHHh----------------cC----C-CCCC-------cchhhh
Q 037647 448 DPSALPEGSPWTCPGDDVFYSASI---------IWGIVG----------------TG----N-MPPA-------RAVHYL 490 (575)
Q Consensus 448 ~~~l~~~~~~~tc~~~~~~~s~si---------~wG~iG----------------~~----~-~p~~-------~~~~~~ 490 (575)
.+.. +... -+.+|...-+++ =|+.++ .+ + +|+- .|....
T Consensus 485 a~~r--~~~~--l~apqa~lma~ia~Gvf~~~lew~mi~~g~~~gi~lI~id~~l~~~~~~~~lpvlAvGvGIylP~s~~ 560 (624)
T COG1297 485 APPR--QGMD--LAAPQATLMATIAKGVFTGNLEWSMILAGAGIGIVLIGIDERLKGRGGKLRLPVLAVGVGIYLPPSLT 560 (624)
T ss_pred CCCC--CCCC--CcchHHHHHHHHhcccCCCCcchHHHHHHHhHhheeeeccHHHhcCCccccccceeeeeeeecChhhc
Confidence 1110 1111 344444444433 233222 11 1 1221 133345
Q ss_pred hhHHHHHHHHHHHHhhc-------hhhhhhhHHHHHHhhhhhHHHHHHHHHHHHhcCCC
Q 037647 491 SWAAVGIFFNYYVYRRF-------KGWWARHTYILSAALDAGVAFMGVFLFLTLQSYDI 542 (575)
Q Consensus 491 ~~~~vg~~~~~~~rrr~-------~~ww~kYnyvlsAaLdaG~~i~~lii~f~~~~~~~ 542 (575)
...++|.+.-+.+.|++ ..-=++-.+++||||..||++.++++.+..-..|.
T Consensus 561 ipi~vG~~l~~~v~~~~~~~~~~~~e~~~r~gvl~aaGLIvGEsL~gvi~a~ii~~~g~ 619 (624)
T COG1297 561 IPIFVGGVLRWAVDRKLKKGDERYKERAKRIGVLFAAGLIVGESLFGVITALIIVGSGK 619 (624)
T ss_pred hHHHHHHHHHHHHHHhcccccchhhhcccceeEEEeeccccchHHHHHHHHHHheecCC
Confidence 56778877777766663 22334467899999999999999999866665544
No 7
>COG1271 CydA Cytochrome bd-type quinol oxidase, subunit 1 [Energy production and conversion]
Probab=57.87 E-value=1.6e+02 Score=32.99 Aligned_cols=96 Identities=18% Similarity=0.273 Sum_probs=54.0
Q ss_pred CChhhHHhhhccCCCChHHHHHHHHHHHHHHHHhhhhcCCCCccCh-----HHHHHHHHHhhHHhHHHHHHHhhhhhhhh
Q 037647 334 ADVHTRLMKKHYEAVPQWWFHIILVATVALSIYACEGFDKQLQLPW-----PLANVAFKTYGYISMSQALSFLADFKLGH 408 (575)
Q Consensus 334 ~D~h~rlm~~~Y~evP~Wwy~~~l~~s~~l~i~~~~~~~~~~~lP~-----Pianm~f~~~g~~~~~qa~~~~~DlKlGh 408 (575)
+|.+++.|.| -|.-++++.++++++....-.-|+++.| -+|+....-+++.+.- .-|+.--=+|-
T Consensus 44 ~d~~y~~~tk--------fw~kvf~InFa~GvvTGivm~fqfg~nW~~fs~~vG~V~g~PLa~E~l~--AFFlEa~FLGi 113 (457)
T COG1271 44 KDEIYKRMTK--------FWGKVFAINFAVGVVTGIVMEFQFGTNWPGFSEYVGDVFGAPLAIEALF--AFFLEATFLGI 113 (457)
T ss_pred CcHHHHHHHH--------HHHHHHHHHHHHhhhhhhhhhhhhhcccHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHhh
Confidence 4778888876 3677778888877765544433778888 2344444444443111 12333333444
Q ss_pred hc----CCChhHHHHHH---HHhhhhhhhHHHHHHHHH
Q 037647 409 YM----KIPPKSMFLVQ---LIGTVVASSVYFGTAWWL 439 (575)
Q Consensus 409 Y~----kiPPR~~F~~Q---ligtiv~~~v~~~v~~~~ 439 (575)
|+ |++||.=+.+- -+||.++++--.++..|+
T Consensus 114 ~lfgwdrv~~~~H~~~t~~VAiGt~~Sa~wIl~aNsWM 151 (457)
T COG1271 114 FLFGWDRVSKKLHLLSTWLVAIGTNLSAFWILAANSWM 151 (457)
T ss_pred eeeeccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 43 56666533332 356666666666666564
No 8
>PHA02132 hypothetical protein
Probab=27.45 E-value=67 Score=26.60 Aligned_cols=41 Identities=17% Similarity=0.396 Sum_probs=31.9
Q ss_pred HHHHHhhhhhhhh-hcCCChhHHHHHHHHhhhhhhhHHHHHH
Q 037647 396 QALSFLADFKLGH-YMKIPPKSMFLVQLIGTVVASSVYFGTA 436 (575)
Q Consensus 396 qa~~~~~DlKlGh-Y~kiPPR~~F~~Qligtiv~~~v~~~v~ 436 (575)
++-.|..+.+-|. --|.|.|+.=..|+.|++.|+.+-++++
T Consensus 26 hg~affdewr~~~pdsk~pa~sl~~vqiyg~ia~awlp~~~~ 67 (86)
T PHA02132 26 HGFAFFDEWRQKRPDSKMPARSLCAVQVYGMIAGAWLPLAIY 67 (86)
T ss_pred hhHHHHHHHHcCCCCccCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 4444555555443 5689999999999999999999998876
No 9
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=24.05 E-value=5.7e+02 Score=27.12 Aligned_cols=38 Identities=21% Similarity=0.152 Sum_probs=29.5
Q ss_pred HhhhhhhhhhcCCChhHHHHHHHHhh----hhhhhHHHHHHH
Q 037647 400 FLADFKLGHYMKIPPKSMFLVQLIGT----VVASSVYFGTAW 437 (575)
Q Consensus 400 ~~~DlKlGhY~kiPPR~~F~~Qligt----iv~~~v~~~v~~ 437 (575)
+++..=+|.-+|++|=.++.+.+.|. ++|.++.+.+..
T Consensus 290 ~l~P~l~g~~~~l~p~~ilisll~g~~l~G~~G~ila~pl~~ 331 (355)
T COG0628 290 ILRPKLMGKRLGLHPLVILLSLLGGGSLFGFVGLILAPPLAA 331 (355)
T ss_pred eeccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666789999999999999999887 456666666553
No 10
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=22.88 E-value=1.4e+02 Score=23.24 Aligned_cols=27 Identities=15% Similarity=0.501 Sum_probs=17.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhhhcC
Q 037647 345 YEAVPQWWFHIILVATVALSIYACEGFD 372 (575)
Q Consensus 345 Y~evP~Wwy~~~l~~s~~l~i~~~~~~~ 372 (575)
-..+|.|| +.++.++++++++-...|+
T Consensus 17 dnplP~ww-~~~f~~tivfa~~Y~~~yp 43 (51)
T PF14715_consen 17 DNPLPRWW-LWLFYGTIVFAVGYLVLYP 43 (51)
T ss_pred cCCCCHHH-HHHHHHHHHHHHHHHHHHh
Confidence 46788886 4556677777776555554
Done!