Query 037647
Match_columns 575
No_of_seqs 167 out of 870
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 04:23:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037647.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037647hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l8s_A Integrin alpha-1; trans 15.2 2.6E+02 0.0088 21.0 4.9 38 208-246 2-40 (54)
2 2jwa_A Receptor tyrosine-prote 13.3 1.1E+02 0.0037 22.1 2.2 19 491-509 23-41 (44)
3 2kog_A Vesicle-associated memb 9.6 2.5E+02 0.0085 24.3 3.8 18 505-522 87-104 (119)
4 4hkr_A Calcium release-activat 8.4 2.8E+02 0.0097 26.4 3.9 24 332-358 100-123 (214)
5 2knc_A Integrin alpha-IIB; tra 8.1 5.3E+02 0.018 19.2 4.5 39 210-249 7-46 (54)
6 1iij_A ERBB-2 receptor protein 8.0 65 0.0022 22.1 -0.5 17 491-507 19-35 (35)
7 2j01_J 50S ribosomal protein L 7.8 2.5E+02 0.0085 25.6 3.2 33 402-434 118-150 (173)
8 1zav_A 50S ribosomal protein L 7.7 2.5E+02 0.0084 25.8 3.2 31 404-434 127-157 (180)
9 2ks1_B Epidermal growth factor 7.5 2.2E+02 0.0075 20.4 2.1 16 493-508 25-40 (44)
10 2l2t_A Receptor tyrosine-prote 7.3 2.3E+02 0.0077 20.4 2.1 17 493-509 24-40 (44)
No 1
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=15.19 E-value=2.6e+02 Score=21.02 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=23.0
Q ss_pred CCcccccHHHHHH-HHHHHHHHHHHHHHHHHhcCcccccC
Q 037647 208 GSPLASPVFAIIN-VLAGFILNLYVLVPIAYWTNTYEAKR 246 (575)
Q Consensus 208 gspl~~P~~a~~n-~~~G~vl~~~ii~P~ly~~n~~~~~~ 246 (575)
|.|--+|+|..+- ..+|.++- .+++-++|--|.+..++
T Consensus 2 ~~~~~vp~WiIi~svl~GLLLL-~Lii~~LwK~GFFKR~~ 40 (54)
T 2l8s_A 2 GLPGRVPLWVILLSAFAGLLLL-MLLILALWKIGFFKRPL 40 (54)
T ss_dssp CCCCCCCTHHHHHHHHHHHHHH-HHHHHHHHHHHHTTSCC
T ss_pred CCCccCchHHHHHHHHHHHHHH-HHHHHHHHHcCcccCCC
Confidence 4566678887554 44555444 45554788777765544
No 2
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=13.35 E-value=1.1e+02 Score=22.11 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHhhchh
Q 037647 491 SWAAVGIFFNYYVYRRFKG 509 (575)
Q Consensus 491 ~~~~vg~~~~~~~rrr~~~ 509 (575)
..++++..+..|+|||+-.
T Consensus 23 l~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHhheehhhhh
Confidence 4578888889999999753
No 3
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=9.62 E-value=2.5e+02 Score=24.26 Aligned_cols=18 Identities=17% Similarity=0.508 Sum_probs=13.0
Q ss_pred hhchhhhhhhHHHHHHhh
Q 037647 505 RRFKGWWARHTYILSAAL 522 (575)
Q Consensus 505 rr~~~ww~kYnyvlsAaL 522 (575)
-|+..||++|-..+-.++
T Consensus 87 l~rkmwwkn~K~~iii~~ 104 (119)
T 2kog_A 87 LKRKYWWKNLKMMIILGV 104 (119)
T ss_dssp HHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 367789999987765433
No 4
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=8.43 E-value=2.8e+02 Score=26.42 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=13.3
Q ss_pred CCCChhhHHhhhccCCCChHHHHHHHH
Q 037647 332 KFADVHTRLMKKHYEAVPQWWFHIILV 358 (575)
Q Consensus 332 ~~~D~h~rlm~~~Y~evP~Wwy~~~l~ 358 (575)
-.++||.| |+. |-|+ .|-+-.++.
T Consensus 100 v~esPH~r-~~~-yIE~-AW~fST~lG 123 (214)
T 4hkr_A 100 VHESPHER-LHW-YIET-AWAFSTLLG 123 (214)
T ss_dssp ----CHHH-HHH-HHHH-HHHHHHHHH
T ss_pred cCCChHHH-HHH-HHHH-HHHHHHHHH
Confidence 34789999 577 8665 466654443
No 5
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=8.08 E-value=5.3e+02 Score=19.24 Aligned_cols=39 Identities=26% Similarity=0.485 Sum_probs=23.6
Q ss_pred cccccHHHHH-HHHHHHHHHHHHHHHHHHhcCcccccCCCC
Q 037647 210 PLASPVFAII-NVLAGFILNLYVLVPIAYWTNTYEAKRFPI 249 (575)
Q Consensus 210 pl~~P~~a~~-n~~~G~vl~~~ii~P~ly~~n~~~~~~~P~ 249 (575)
+--+|+|..+ +..+|.++- .+++-++|--|.+..++-|.
T Consensus 7 ~~~vp~wiIi~svl~GLllL-~li~~~LwK~GFFkR~~~~~ 46 (54)
T 2knc_A 7 ERAIPIWWVLVGVLGGLLLL-TILVLAMWKVGFFKRNRPPL 46 (54)
T ss_dssp TTTCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTTTCCSC
T ss_pred CCCcchHHHHHHHHHHHHHH-HHHHHHHHHcCcccCCCCCc
Confidence 3347888755 445555554 44554788778776665554
No 6
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=7.96 E-value=65 Score=22.15 Aligned_cols=17 Identities=12% Similarity=0.163 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHhhc
Q 037647 491 SWAAVGIFFNYYVYRRF 507 (575)
Q Consensus 491 ~~~~vg~~~~~~~rrr~ 507 (575)
..++++..+..|+|||+
T Consensus 19 l~vii~l~~~~~iRRr~ 35 (35)
T 1iij_A 19 LFLILVVVVGILIKRRR 35 (35)
T ss_dssp HHHHHTTTTTHHHHHCC
T ss_pred HHHHHHHHhheEEeecC
Confidence 45667777778888885
No 7
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=7.75 E-value=2.5e+02 Score=25.56 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=25.7
Q ss_pred hhhhhhhhcCCChhHHHHHHHHhhhhhhhHHHH
Q 037647 402 ADFKLGHYMKIPPKSMFLVQLIGTVVASSVYFG 434 (575)
Q Consensus 402 ~DlKlGhY~kiPPR~~F~~Qligtiv~~~v~~~ 434 (575)
..-.+-.+.++|.|...++|++|++=+..-+++
T Consensus 118 ~~~~v~~la~LPs~eel~a~l~g~l~ap~~~~~ 150 (173)
T 2j01_J 118 TAKDVEALAELPTMDELRAELVGVLQAPMAELV 150 (173)
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 334466889999999999999999876655543
No 8
>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A
Probab=7.70 E-value=2.5e+02 Score=25.78 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=24.8
Q ss_pred hhhhhhcCCChhHHHHHHHHhhhhhhhHHHH
Q 037647 404 FKLGHYMKIPPKSMFLVQLIGTVVASSVYFG 434 (575)
Q Consensus 404 lKlGhY~kiPPR~~F~~Qligtiv~~~v~~~ 434 (575)
-.+-.+.++|.|...++|++|++=+..-+++
T Consensus 127 ~~v~~la~LPs~eel~a~l~g~l~ap~~~l~ 157 (180)
T 1zav_A 127 EEVENIAKLPSKEELYAMLVGRVKAPITGLV 157 (180)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999866665544
No 9
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=7.49 E-value=2.2e+02 Score=20.42 Aligned_cols=16 Identities=19% Similarity=0.291 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhhch
Q 037647 493 AAVGIFFNYYVYRRFK 508 (575)
Q Consensus 493 ~~vg~~~~~~~rrr~~ 508 (575)
.+++....+|+|||+-
T Consensus 25 ~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 25 LVVALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhhhhHh
Confidence 4556667788988874
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=7.30 E-value=2.3e+02 Score=20.40 Aligned_cols=17 Identities=35% Similarity=0.516 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhhchh
Q 037647 493 AAVGIFFNYYVYRRFKG 509 (575)
Q Consensus 493 ~~vg~~~~~~~rrr~~~ 509 (575)
.+++....+|+|||+-+
T Consensus 24 ~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 24 VIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHhhhhhhh
Confidence 45566677888888643
Done!